Query 007747
Match_columns 591
No_of_seqs 459 out of 3379
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0781 Signal recognition par 100.0 2E-101 5E-106 811.0 30.7 536 1-589 1-556 (587)
2 COG0552 FtsY Signal recognitio 100.0 2.7E-41 5.8E-46 348.4 21.0 244 329-590 59-310 (340)
3 COG0541 Ffh Signal recognition 100.0 1.2E-39 2.6E-44 344.8 21.7 257 315-589 7-264 (451)
4 PF04086 SRP-alpha_N: Signal r 100.0 2.5E-39 5.5E-44 333.5 5.3 114 27-147 1-124 (279)
5 KOG0780 Signal recognition par 100.0 3.4E-36 7.4E-41 312.1 22.7 259 314-589 7-265 (483)
6 TIGR01425 SRP54_euk signal rec 100.0 3.2E-36 6.8E-41 324.8 22.5 257 315-589 7-264 (429)
7 PRK14974 cell division protein 100.0 1.1E-35 2.5E-40 313.0 20.5 259 312-589 45-304 (336)
8 PRK10867 signal recognition pa 100.0 4.7E-33 1E-37 301.6 19.5 256 316-589 8-265 (433)
9 TIGR00959 ffh signal recogniti 100.0 9.1E-32 2E-36 291.4 20.3 257 315-589 6-264 (428)
10 PRK00771 signal recognition pa 100.0 1.4E-31 2.9E-36 290.8 20.3 253 316-589 4-257 (437)
11 PRK10416 signal recognition pa 100.0 9E-31 1.9E-35 274.7 20.2 247 317-589 31-284 (318)
12 TIGR00064 ftsY signal recognit 100.0 2.3E-29 5E-34 258.9 17.1 234 334-589 2-242 (272)
13 PF00448 SRP54: SRP54-type pro 99.9 3.3E-28 7.2E-33 239.0 6.7 164 415-589 1-165 (196)
14 COG1131 CcmA ABC-type multidru 99.9 1.9E-27 4.1E-32 247.2 12.6 177 399-584 17-210 (293)
15 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 3.1E-27 6.7E-32 238.6 13.1 175 401-585 18-213 (254)
16 COG1126 GlnQ ABC-type polar am 99.9 3.1E-27 6.7E-32 231.1 8.9 165 396-573 11-194 (240)
17 COG4555 NatA ABC-type Na+ tran 99.9 3.9E-27 8.5E-32 227.8 9.4 177 400-585 15-207 (245)
18 COG1120 FepC ABC-type cobalami 99.9 1.3E-26 2.9E-31 234.9 13.2 176 397-582 12-210 (258)
19 PRK14723 flhF flagellar biosyn 99.9 9.5E-26 2.1E-30 256.6 16.4 222 336-589 124-348 (767)
20 COG1116 TauB ABC-type nitrate/ 99.9 7.9E-26 1.7E-30 226.2 13.2 162 399-572 15-188 (248)
21 PRK11889 flhF flagellar biosyn 99.9 3E-25 6.5E-30 235.6 17.2 222 337-589 178-402 (436)
22 PRK13537 nodulation ABC transp 99.9 9.7E-26 2.1E-30 235.7 12.5 177 399-584 19-211 (306)
23 COG1127 Ttg2A ABC-type transpo 99.9 6.3E-26 1.4E-30 224.9 10.3 179 392-584 13-219 (263)
24 PRK13536 nodulation factor exp 99.9 2.5E-25 5.4E-30 235.9 12.8 178 398-584 52-245 (340)
25 COG4152 ABC-type uncharacteriz 99.9 9.7E-26 2.1E-30 223.6 8.2 178 397-583 12-202 (300)
26 COG1136 SalX ABC-type antimicr 99.9 8.1E-25 1.8E-29 218.0 13.8 168 400-579 18-207 (226)
27 COG2884 FtsE Predicted ATPase 99.9 1.6E-24 3.4E-29 208.2 14.2 175 400-583 15-209 (223)
28 PRK12724 flagellar biosynthesi 99.9 1.7E-24 3.7E-29 232.3 15.6 235 327-589 145-384 (432)
29 TIGR01188 drrA daunorubicin re 99.9 8.1E-25 1.8E-29 228.1 12.5 176 400-584 6-197 (302)
30 PRK12726 flagellar biosynthesi 99.9 2.6E-24 5.6E-29 228.0 15.8 221 340-589 145-367 (407)
31 COG3839 MalK ABC-type sugar tr 99.9 5.7E-25 1.2E-29 230.8 10.7 171 402-584 18-207 (338)
32 PRK06995 flhF flagellar biosyn 99.9 2.1E-24 4.6E-29 236.3 15.6 238 314-589 176-416 (484)
33 COG3842 PotA ABC-type spermidi 99.9 2.7E-25 5.7E-30 234.4 8.0 165 397-573 15-195 (352)
34 cd03226 ABC_cobalt_CbiO_domain 99.9 2.7E-24 5.9E-29 211.3 12.8 175 400-584 13-199 (205)
35 PRK12723 flagellar biosynthesi 99.9 5.5E-24 1.2E-28 228.3 15.2 224 336-589 108-337 (388)
36 COG1135 AbcC ABC-type metal io 99.9 2.6E-24 5.7E-29 220.0 11.5 173 399-583 18-214 (339)
37 TIGR00960 3a0501s02 Type II (G 99.9 4.8E-24 1E-28 211.0 12.7 175 400-583 16-210 (216)
38 cd03235 ABC_Metallic_Cations A 99.9 3.3E-24 7.2E-29 211.7 10.9 176 400-584 12-205 (213)
39 TIGR01288 nodI ATP-binding ABC 99.9 4.8E-24 1E-28 222.4 12.4 176 400-584 17-208 (303)
40 cd03259 ABC_Carb_Solutes_like 99.9 9.8E-24 2.1E-28 208.3 14.0 176 400-584 13-204 (213)
41 TIGR03522 GldA_ABC_ATP gliding 99.9 5.6E-24 1.2E-28 221.8 12.6 176 399-584 14-205 (301)
42 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 7.7E-24 1.7E-28 209.6 12.9 174 400-583 17-212 (218)
43 TIGR02673 FtsE cell division A 99.9 8.4E-24 1.8E-28 208.8 12.9 176 400-584 15-210 (214)
44 COG1117 PstB ABC-type phosphat 99.9 9E-24 1.9E-28 206.3 12.6 164 397-574 17-207 (253)
45 COG1125 OpuBA ABC-type proline 99.9 4.1E-24 8.9E-29 213.3 10.4 166 399-576 13-198 (309)
46 COG1419 FlhF Flagellar GTP-bin 99.9 6.4E-24 1.4E-28 225.3 12.3 159 412-589 202-363 (407)
47 cd03261 ABC_Org_Solvent_Resist 99.9 8.2E-24 1.8E-28 212.1 12.4 176 400-584 13-210 (235)
48 cd03225 ABC_cobalt_CbiO_domain 99.9 5.6E-24 1.2E-28 209.6 10.9 176 400-584 14-207 (211)
49 cd03265 ABC_DrrA DrrA is the A 99.9 8.9E-24 1.9E-28 209.8 12.4 175 400-583 13-204 (220)
50 cd03293 ABC_NrtD_SsuB_transpor 99.9 7E-24 1.5E-28 210.6 11.6 176 400-584 17-205 (220)
51 TIGR02314 ABC_MetN D-methionin 99.9 1E-23 2.2E-28 223.7 12.8 176 400-584 18-214 (343)
52 PRK14722 flhF flagellar biosyn 99.9 4.2E-23 9.2E-28 220.1 16.8 233 333-589 70-306 (374)
53 TIGR01166 cbiO cobalt transpor 99.9 2.2E-23 4.7E-28 202.5 13.2 150 400-560 5-176 (190)
54 cd03219 ABC_Mj1267_LivG_branch 99.9 1.5E-23 3.2E-28 210.1 11.8 176 400-584 13-216 (236)
55 PRK09536 btuD corrinoid ABC tr 99.9 1.8E-23 3.9E-28 225.9 12.9 177 399-584 15-212 (402)
56 cd03268 ABC_BcrA_bacitracin_re 99.9 1.7E-23 3.7E-28 205.9 11.5 175 400-584 13-199 (208)
57 PRK13647 cbiO cobalt transport 99.9 2.3E-23 5E-28 214.4 12.9 176 400-584 18-211 (274)
58 cd03292 ABC_FtsE_transporter F 99.9 2.7E-23 5.9E-28 205.0 12.9 176 400-584 14-209 (214)
59 PRK13538 cytochrome c biogenes 99.9 3.6E-23 7.7E-28 203.5 13.0 173 400-583 14-201 (204)
60 cd03296 ABC_CysA_sulfate_impor 99.9 2.9E-23 6.2E-28 208.8 12.5 176 400-584 15-210 (239)
61 cd03262 ABC_HisP_GlnQ_permease 99.9 2.7E-23 5.8E-28 204.9 11.9 176 400-584 13-208 (213)
62 cd03224 ABC_TM1139_LivF_branch 99.9 2E-23 4.2E-28 207.1 11.0 176 400-584 13-205 (222)
63 cd03256 ABC_PhnC_transporter A 99.9 4.2E-23 9.1E-28 207.2 13.3 176 400-584 14-218 (241)
64 cd03301 ABC_MalK_N The N-termi 99.9 5.3E-23 1.1E-27 202.9 13.8 176 400-584 13-204 (213)
65 PRK13641 cbiO cobalt transport 99.9 3.2E-23 6.9E-28 214.7 12.7 176 400-584 20-218 (287)
66 cd03266 ABC_NatA_sodium_export 99.9 4.7E-23 1E-27 204.0 13.3 175 401-584 19-209 (218)
67 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.4E-23 7.3E-28 212.5 12.7 179 397-584 34-234 (269)
68 cd03263 ABC_subfamily_A The AB 99.9 3.2E-23 7E-28 205.4 12.1 175 400-584 15-205 (220)
69 COG1118 CysA ABC-type sulfate/ 99.9 3.3E-23 7.2E-28 211.6 12.4 172 399-582 14-209 (345)
70 cd03269 ABC_putative_ATPase Th 99.9 2.1E-23 4.6E-28 205.5 10.6 175 400-583 13-200 (210)
71 cd03218 ABC_YhbG The ABC trans 99.9 5.8E-23 1.3E-27 205.2 13.9 176 400-584 13-206 (232)
72 TIGR02315 ABC_phnC phosphonate 99.9 3.4E-23 7.3E-28 208.3 12.3 176 400-584 15-219 (243)
73 TIGR01186 proV glycine betaine 99.9 3.6E-23 7.8E-28 220.9 13.1 177 399-584 5-203 (363)
74 PRK11153 metN DL-methionine tr 99.9 3.4E-23 7.5E-28 219.8 12.7 176 400-584 18-214 (343)
75 PRK11650 ugpC glycerol-3-phosp 99.9 3.8E-23 8.2E-28 220.5 13.0 173 400-584 17-208 (356)
76 PRK13637 cbiO cobalt transport 99.9 4E-23 8.6E-28 214.0 12.8 174 400-584 20-218 (287)
77 cd03260 ABC_PstB_phosphate_tra 99.9 6.9E-23 1.5E-27 204.2 13.8 175 400-584 13-213 (227)
78 COG1122 CbiO ABC-type cobalt t 99.9 3.7E-23 8E-28 208.5 11.8 176 400-584 17-212 (235)
79 PRK13638 cbiO cobalt transport 99.9 4.3E-23 9.3E-28 211.7 12.5 174 400-584 14-209 (271)
80 PRK11629 lolD lipoprotein tran 99.9 4.8E-23 1E-27 206.5 12.5 169 400-577 22-212 (233)
81 PRK10908 cell division protein 99.9 8.3E-23 1.8E-27 203.2 14.0 176 400-584 15-210 (222)
82 PRK13543 cytochrome c biogenes 99.9 5.6E-23 1.2E-27 203.7 12.7 179 400-587 24-213 (214)
83 TIGR02211 LolD_lipo_ex lipopro 99.9 5E-23 1.1E-27 204.2 12.3 174 400-583 18-213 (221)
84 PRK11248 tauB taurine transpor 99.9 4.7E-23 1E-27 210.0 12.4 176 400-584 14-202 (255)
85 PRK10851 sulfate/thiosulfate t 99.9 5.1E-23 1.1E-27 219.3 13.0 176 400-584 15-210 (353)
86 TIGR03410 urea_trans_UrtE urea 99.9 6.5E-23 1.4E-27 204.8 12.9 176 400-584 13-205 (230)
87 TIGR03608 L_ocin_972_ABC putat 99.9 6.4E-23 1.4E-27 201.1 12.5 172 400-581 11-203 (206)
88 TIGR03265 PhnT2 putative 2-ami 99.9 3.7E-23 8E-28 220.4 11.6 177 399-584 16-208 (353)
89 PRK11432 fbpC ferric transport 99.9 5.3E-23 1.1E-27 219.0 12.7 173 400-584 19-210 (351)
90 PRK14721 flhF flagellar biosyn 99.9 1.5E-22 3.2E-27 218.8 16.3 221 333-589 128-351 (420)
91 TIGR03258 PhnT 2-aminoethylpho 99.9 5.8E-23 1.3E-27 219.4 12.9 176 400-584 18-212 (362)
92 PRK10070 glycine betaine trans 99.9 6.2E-23 1.3E-27 221.6 13.2 178 398-584 39-238 (400)
93 COG1124 DppF ABC-type dipeptid 99.9 4.6E-23 1E-27 205.1 11.1 173 401-583 21-214 (252)
94 PRK13634 cbiO cobalt transport 99.9 6.5E-23 1.4E-27 212.8 12.6 176 400-584 20-219 (290)
95 PRK13646 cbiO cobalt transport 99.9 6.8E-23 1.5E-27 212.1 12.7 176 400-584 20-219 (286)
96 PRK11247 ssuB aliphatic sulfon 99.9 7.1E-23 1.5E-27 209.1 12.7 173 400-584 25-207 (257)
97 PRK11000 maltose/maltodextrin 99.9 6.6E-23 1.4E-27 219.6 12.8 176 400-584 16-207 (369)
98 cd03257 ABC_NikE_OppD_transpor 99.9 9E-23 1.9E-27 203.0 12.7 175 401-584 19-219 (228)
99 cd03267 ABC_NatA_like Similar 99.9 1.6E-22 3.4E-27 203.5 14.6 180 396-584 30-227 (236)
100 cd03258 ABC_MetN_methionine_tr 99.9 8.5E-23 1.8E-27 204.3 12.5 175 401-584 19-214 (233)
101 PRK10584 putative ABC transpor 99.9 9.7E-23 2.1E-27 203.3 12.6 173 401-583 24-218 (228)
102 PRK10895 lipopolysaccharide AB 99.9 9.6E-23 2.1E-27 205.1 12.6 176 400-584 16-210 (241)
103 cd03231 ABC_CcmA_heme_exporter 99.9 1.3E-22 2.9E-27 199.1 13.3 158 400-573 13-183 (201)
104 PRK13651 cobalt transporter AT 99.9 9.6E-23 2.1E-27 213.1 12.9 173 401-584 21-238 (305)
105 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.9E-22 4.2E-27 202.5 14.5 175 400-584 14-205 (236)
106 COG1137 YhbG ABC-type (unclass 99.9 1.1E-23 2.3E-28 203.9 5.2 178 397-583 14-211 (243)
107 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.2E-22 2.6E-27 200.3 12.7 171 405-584 16-202 (211)
108 PRK09493 glnQ glutamine ABC tr 99.9 1.1E-22 2.3E-27 204.7 12.3 175 400-584 14-209 (240)
109 TIGR01184 ntrCD nitrate transp 99.9 1.1E-22 2.3E-27 204.0 12.0 173 403-584 1-188 (230)
110 PRK11264 putative amino-acid A 99.9 1.2E-22 2.6E-27 205.4 12.5 175 400-584 16-217 (250)
111 PRK13643 cbiO cobalt transport 99.9 1.3E-22 2.9E-27 210.2 13.1 173 401-584 20-217 (288)
112 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.2E-22 2.7E-27 204.6 12.5 176 400-584 14-209 (242)
113 PRK13649 cbiO cobalt transport 99.9 1.4E-22 3E-27 208.7 13.2 173 401-584 21-218 (280)
114 PRK06731 flhF flagellar biosyn 99.9 7.6E-23 1.7E-27 210.0 11.1 226 332-589 8-236 (270)
115 PRK13652 cbiO cobalt transport 99.9 1.3E-22 2.8E-27 209.0 12.8 173 401-584 18-211 (277)
116 TIGR03740 galliderm_ABC gallid 99.9 1.2E-22 2.5E-27 202.2 12.1 175 400-584 13-197 (223)
117 COG0410 LivF ABC-type branched 99.9 1.2E-22 2.6E-27 200.8 11.9 165 395-571 11-193 (237)
118 PRK13636 cbiO cobalt transport 99.9 1.3E-22 2.8E-27 209.7 12.7 176 400-584 19-215 (283)
119 PRK05703 flhF flagellar biosyn 99.9 3.8E-22 8.2E-27 217.1 16.7 224 331-589 155-382 (424)
120 PRK11831 putative ABC transpor 99.9 1.3E-22 2.8E-27 208.1 12.1 175 400-584 20-217 (269)
121 PRK13650 cbiO cobalt transport 99.9 1.6E-22 3.5E-27 208.6 12.9 173 400-584 20-213 (279)
122 PRK09452 potA putrescine/sperm 99.9 1.6E-22 3.4E-27 217.0 12.9 174 399-584 26-218 (375)
123 PRK13635 cbiO cobalt transport 99.9 1.9E-22 4.1E-27 208.1 13.1 173 400-584 20-213 (279)
124 COG3638 ABC-type phosphate/pho 99.9 1E-22 2.2E-27 201.7 10.4 154 398-560 15-196 (258)
125 PRK13548 hmuV hemin importer A 99.9 2E-22 4.3E-27 205.5 13.0 176 400-584 15-214 (258)
126 PRK13644 cbiO cobalt transport 99.9 2.1E-22 4.5E-27 207.3 13.1 175 400-584 15-208 (274)
127 PRK11231 fecE iron-dicitrate t 99.9 1.2E-22 2.7E-27 206.3 11.3 176 400-584 15-211 (255)
128 TIGR03411 urea_trans_UrtD urea 99.9 1.8E-22 4E-27 203.0 12.4 175 400-584 15-215 (242)
129 TIGR03415 ABC_choXWV_ATP choli 99.9 2.1E-22 4.6E-27 216.2 13.2 178 397-583 34-237 (382)
130 PRK15056 manganese/iron transp 99.9 1.8E-22 3.8E-27 207.4 12.0 173 400-581 20-212 (272)
131 TIGR02769 nickel_nikE nickel i 99.9 2.5E-22 5.4E-27 205.4 13.0 176 400-584 24-224 (265)
132 PRK11300 livG leucine/isoleuci 99.9 1.9E-22 4.1E-27 204.5 11.9 176 400-584 18-227 (255)
133 TIGR00972 3a0107s01c2 phosphat 99.9 2E-22 4.4E-27 203.6 12.1 175 400-584 14-216 (247)
134 PRK13645 cbiO cobalt transport 99.9 2.2E-22 4.7E-27 208.4 12.5 175 401-584 25-224 (289)
135 PRK11124 artP arginine transpo 99.9 1.9E-22 4E-27 203.1 11.6 176 400-584 15-214 (242)
136 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.6E-22 5.6E-27 200.6 12.3 176 397-584 32-215 (224)
137 PRK13639 cbiO cobalt transport 99.9 3.1E-22 6.8E-27 206.0 13.2 176 400-584 15-210 (275)
138 TIGR01189 ccmA heme ABC export 99.9 3E-22 6.5E-27 195.9 12.4 160 400-573 13-185 (198)
139 PRK11614 livF leucine/isoleuci 99.9 3.3E-22 7.2E-27 200.7 13.1 175 400-584 18-210 (237)
140 PRK15112 antimicrobial peptide 99.9 2.2E-22 4.8E-27 206.2 11.9 176 400-584 26-223 (267)
141 TIGR02770 nickel_nikD nickel i 99.9 2.4E-22 5.1E-27 201.2 11.8 174 402-584 1-199 (230)
142 PRK14250 phosphate ABC transpo 99.9 4.4E-22 9.5E-27 200.8 13.8 173 400-584 16-205 (241)
143 PRK10575 iron-hydroxamate tran 99.9 2.7E-22 5.9E-27 205.1 12.4 176 400-584 24-221 (265)
144 PRK13631 cbiO cobalt transport 99.9 3.3E-22 7.2E-27 210.4 13.3 176 400-584 39-249 (320)
145 cd03264 ABC_drug_resistance_li 99.9 2.4E-22 5.3E-27 198.1 11.4 173 400-583 13-201 (211)
146 PRK09544 znuC high-affinity zi 99.9 2.9E-22 6.2E-27 203.9 12.2 174 400-584 17-194 (251)
147 PRK13633 cobalt transporter AT 99.9 4.8E-22 1E-26 205.1 13.7 173 400-584 23-217 (280)
148 TIGR02324 CP_lyasePhnL phospho 99.9 3.4E-22 7.4E-27 198.8 12.1 174 400-582 21-220 (224)
149 cd03214 ABC_Iron-Siderophores_ 99.9 2.5E-22 5.5E-27 193.9 10.7 149 400-584 12-171 (180)
150 PRK13632 cbiO cobalt transport 99.9 5.5E-22 1.2E-26 203.7 13.8 175 400-584 22-215 (271)
151 PRK10619 histidine/lysine/argi 99.9 3E-22 6.4E-27 203.7 11.7 176 400-584 18-225 (257)
152 PRK14259 phosphate ABC transpo 99.9 6.6E-22 1.4E-26 202.9 14.3 176 400-585 26-227 (269)
153 PRK14242 phosphate transporter 99.9 6.8E-22 1.5E-26 200.3 14.2 175 400-584 19-221 (253)
154 PRK15439 autoinducer 2 ABC tra 99.9 4.8E-22 1E-26 221.3 14.0 176 399-584 23-213 (510)
155 TIGR01277 thiQ thiamine ABC tr 99.9 5.5E-22 1.2E-26 196.2 12.9 174 402-584 13-202 (213)
156 PRK10762 D-ribose transporter 99.9 4.3E-22 9.3E-27 221.1 13.4 176 400-584 17-214 (501)
157 PRK11308 dppF dipeptide transp 99.9 3.2E-22 7E-27 211.1 11.7 176 400-584 28-228 (327)
158 TIGR03005 ectoine_ehuA ectoine 99.9 3.2E-22 6.9E-27 202.8 11.1 176 400-584 13-220 (252)
159 PRK10771 thiQ thiamine transpo 99.9 5.9E-22 1.3E-26 198.5 12.9 171 405-584 17-203 (232)
160 PRK13539 cytochrome c biogenes 99.9 6.7E-22 1.5E-26 195.0 13.0 167 400-576 15-192 (207)
161 PRK03695 vitamin B12-transport 99.9 6.5E-22 1.4E-26 200.6 13.2 173 402-584 11-206 (248)
162 TIGR03873 F420-0_ABC_ATP propo 99.9 6.7E-22 1.5E-26 201.0 13.2 176 400-584 14-210 (256)
163 cd03297 ABC_ModC_molybdenum_tr 99.9 4E-22 8.7E-27 197.1 11.1 170 405-584 16-205 (214)
164 PRK14247 phosphate ABC transpo 99.9 1.3E-21 2.7E-26 198.0 14.8 175 400-584 16-218 (250)
165 PRK15079 oligopeptide ABC tran 99.9 4.1E-22 8.9E-27 210.6 11.6 177 399-584 33-235 (331)
166 PRK11022 dppD dipeptide transp 99.9 5E-22 1.1E-26 209.6 12.2 176 400-584 20-227 (326)
167 TIGR02142 modC_ABC molybdenum 99.9 5.9E-22 1.3E-26 211.2 12.9 171 405-584 15-205 (354)
168 cd03245 ABCC_bacteriocin_expor 99.9 5.3E-22 1.1E-26 196.8 11.6 169 400-584 17-211 (220)
169 PRK10253 iron-enterobactin tra 99.9 6.3E-22 1.4E-26 202.5 12.5 176 400-584 20-217 (265)
170 COG4175 ProV ABC-type proline/ 99.9 6.4E-22 1.4E-26 202.6 12.0 180 396-588 37-239 (386)
171 cd03300 ABC_PotA_N PotA is an 99.9 8.7E-22 1.9E-26 197.4 12.8 176 400-584 13-204 (232)
172 PRK10247 putative ABC transpor 99.9 8.4E-22 1.8E-26 196.7 12.7 174 400-584 20-210 (225)
173 TIGR01978 sufC FeS assembly AT 99.9 8.3E-22 1.8E-26 198.0 12.6 176 400-584 13-218 (243)
174 PRK11607 potG putrescine trans 99.9 9.3E-22 2E-26 211.3 13.6 173 400-584 32-223 (377)
175 PRK14267 phosphate ABC transpo 99.9 7.9E-22 1.7E-26 199.9 12.4 175 400-584 17-221 (253)
176 PRK13549 xylose transporter AT 99.9 1.1E-21 2.5E-26 218.0 14.6 177 399-584 17-216 (506)
177 PRK11144 modC molybdate transp 99.9 7.1E-22 1.5E-26 210.4 12.4 171 405-584 16-202 (352)
178 cd03216 ABC_Carb_Monos_I This 99.9 1.1E-21 2.3E-26 186.9 12.3 143 400-584 13-155 (163)
179 PRK11701 phnK phosphonate C-P 99.9 7.1E-22 1.5E-26 201.1 11.7 175 400-583 19-224 (258)
180 COG4586 ABC-type uncharacteriz 99.9 7.9E-22 1.7E-26 198.6 11.8 191 384-585 20-231 (325)
181 cd03234 ABCG_White The White s 99.9 1.4E-21 3E-26 195.0 13.5 176 400-584 20-217 (226)
182 PRK13648 cbiO cobalt transport 99.9 1.5E-21 3.2E-26 200.2 14.0 175 400-584 22-215 (269)
183 PRK09984 phosphonate/organopho 99.9 7E-22 1.5E-26 201.6 11.5 176 400-584 17-226 (262)
184 PRK13540 cytochrome c biogenes 99.9 1.1E-21 2.4E-26 192.3 12.5 157 400-569 14-185 (200)
185 PRK09700 D-allose transporter 99.9 9.9E-22 2.1E-26 218.6 13.4 176 400-584 18-218 (510)
186 PRK13640 cbiO cobalt transport 99.9 1.2E-21 2.6E-26 202.4 13.1 173 400-584 20-216 (282)
187 cd03215 ABC_Carb_Monos_II This 99.9 8.4E-22 1.8E-26 190.6 11.1 153 402-584 15-177 (182)
188 PRK10418 nikD nickel transport 99.9 1.2E-21 2.6E-26 199.1 12.7 176 400-584 16-214 (254)
189 PRK14235 phosphate transporter 99.9 2.4E-21 5.2E-26 198.5 15.0 175 400-584 32-235 (267)
190 PRK10982 galactose/methyl gala 99.9 7.8E-22 1.7E-26 218.4 12.1 176 400-584 11-207 (491)
191 COG0411 LivG ABC-type branched 99.9 2.8E-22 6E-27 199.7 7.6 179 397-584 14-223 (250)
192 PRK14243 phosphate transporter 99.9 2.1E-21 4.5E-26 198.6 14.0 176 400-585 23-224 (264)
193 PRK09700 D-allose transporter 99.9 1.2E-21 2.7E-26 217.8 13.3 175 401-584 277-482 (510)
194 cd03229 ABC_Class3 This class 99.9 1.2E-21 2.6E-26 188.9 11.4 150 400-584 13-174 (178)
195 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.6E-21 3.4E-26 195.8 12.8 170 400-583 16-209 (238)
196 PRK14241 phosphate transporter 99.9 1.4E-21 3.1E-26 198.9 12.3 175 400-584 17-220 (258)
197 TIGR00968 3a0106s01 sulfate AB 99.9 2.7E-21 5.8E-26 194.6 14.2 176 400-584 13-204 (237)
198 PRK15093 antimicrobial peptide 99.9 1.5E-21 3.3E-26 206.2 12.8 177 399-584 19-232 (330)
199 cd03299 ABC_ModC_like Archeal 99.9 1.6E-21 3.6E-26 195.9 12.4 174 402-584 14-203 (235)
200 TIGR02633 xylG D-xylose ABC tr 99.9 2.1E-21 4.4E-26 215.5 13.7 176 400-584 14-214 (500)
201 PRK14248 phosphate ABC transpo 99.9 2.2E-21 4.8E-26 198.7 12.9 176 399-584 33-236 (268)
202 PRK14269 phosphate ABC transpo 99.9 3.1E-21 6.7E-26 195.0 13.7 175 400-584 15-214 (246)
203 PRK13549 xylose transporter AT 99.9 1.7E-21 3.7E-26 216.6 12.8 176 400-584 275-478 (506)
204 PRK14273 phosphate ABC transpo 99.9 2E-21 4.4E-26 197.1 12.3 175 400-584 20-222 (254)
205 PRK09473 oppD oligopeptide tra 99.9 1.9E-21 4.1E-26 205.5 12.5 177 399-584 28-235 (330)
206 cd03252 ABCC_Hemolysin The ABC 99.9 2.2E-21 4.7E-26 194.7 12.3 168 400-583 15-208 (237)
207 PRK14268 phosphate ABC transpo 99.9 3.4E-21 7.3E-26 196.2 13.9 173 400-584 25-226 (258)
208 cd03246 ABCC_Protease_Secretio 99.9 3.4E-21 7.4E-26 184.9 12.8 144 400-583 15-167 (173)
209 COG4604 CeuD ABC-type enteroch 99.9 9.7E-22 2.1E-26 189.9 9.0 170 396-574 10-199 (252)
210 PRK11288 araG L-arabinose tran 99.9 1.6E-21 3.4E-26 216.6 12.0 176 400-584 17-213 (501)
211 PRK14256 phosphate ABC transpo 99.9 3.2E-21 7E-26 195.4 13.3 175 400-584 17-220 (252)
212 cd03230 ABC_DR_subfamily_A Thi 99.9 1.8E-21 3.9E-26 186.8 10.8 146 401-583 14-167 (173)
213 TIGR03771 anch_rpt_ABC anchore 99.9 2.9E-21 6.3E-26 192.8 12.7 166 408-582 1-184 (223)
214 PRK10938 putative molybdenum t 99.9 2.7E-21 5.9E-26 214.0 13.8 176 400-584 16-208 (490)
215 PRK11288 araG L-arabinose tran 99.9 2.1E-21 4.6E-26 215.6 12.8 175 401-584 267-469 (501)
216 PRK14254 phosphate ABC transpo 99.9 2.6E-21 5.6E-26 200.4 12.6 172 400-581 52-249 (285)
217 cd03250 ABCC_MRP_domain1 Domai 99.9 4.4E-21 9.6E-26 188.3 13.6 162 401-581 19-197 (204)
218 PRK13642 cbiO cobalt transport 99.9 3E-21 6.4E-26 198.9 12.9 171 400-582 20-211 (277)
219 TIGR02982 heterocyst_DevA ABC 99.9 3.3E-21 7.1E-26 191.6 12.7 174 400-583 18-213 (220)
220 cd03254 ABCC_Glucan_exporter_l 99.9 2.4E-21 5.2E-26 193.2 11.8 169 401-583 17-209 (229)
221 PRK14265 phosphate ABC transpo 99.9 3.5E-21 7.6E-26 198.2 13.3 175 400-584 33-233 (274)
222 PRK14245 phosphate ABC transpo 99.9 4.4E-21 9.6E-26 194.2 13.8 175 400-584 16-218 (250)
223 PRK13547 hmuV hemin importer A 99.9 3.4E-21 7.4E-26 198.3 13.0 176 400-584 14-228 (272)
224 TIGR02323 CP_lyasePhnK phospho 99.9 2.4E-21 5.3E-26 196.3 11.8 175 400-583 16-221 (253)
225 cd03251 ABCC_MsbA MsbA is an e 99.9 2.9E-21 6.2E-26 193.3 11.9 167 401-583 16-208 (234)
226 PRK10744 pstB phosphate transp 99.9 5.7E-21 1.2E-25 194.7 14.3 174 400-583 26-227 (260)
227 PRK10762 D-ribose transporter 99.9 2.6E-21 5.6E-26 214.9 12.8 174 402-584 267-468 (501)
228 PRK14263 phosphate ABC transpo 99.9 4.1E-21 9E-26 196.3 13.3 176 399-584 20-221 (261)
229 PRK14262 phosphate ABC transpo 99.8 5.3E-21 1.1E-25 193.5 13.4 175 400-584 16-218 (250)
230 PRK15439 autoinducer 2 ABC tra 99.8 2.9E-21 6.2E-26 215.1 12.5 174 402-584 278-476 (510)
231 PRK14240 phosphate transporter 99.8 4.7E-21 1E-25 193.9 12.9 175 400-584 16-218 (250)
232 PRK10261 glutathione transport 99.8 1.9E-21 4.2E-26 221.3 11.3 176 400-584 337-537 (623)
233 cd03244 ABCC_MRP_domain2 Domai 99.8 4.7E-21 1E-25 190.1 12.4 169 400-583 17-209 (221)
234 PRK09580 sufC cysteine desulfu 99.8 4.1E-21 8.8E-26 193.8 12.0 174 400-582 14-217 (248)
235 PRK14249 phosphate ABC transpo 99.8 7E-21 1.5E-25 192.9 13.8 175 400-584 17-219 (251)
236 cd03237 ABC_RNaseL_inhibitor_d 99.8 3.8E-21 8.2E-26 195.3 11.7 169 402-583 9-188 (246)
237 TIGR02633 xylG D-xylose ABC tr 99.8 3.4E-21 7.3E-26 213.7 12.4 176 400-584 273-476 (500)
238 cd03228 ABCC_MRP_Like The MRP 99.8 4.8E-21 1E-25 183.5 11.8 142 401-583 16-166 (171)
239 PRK14272 phosphate ABC transpo 99.8 4.8E-21 1E-25 193.9 12.4 175 400-584 17-220 (252)
240 PRK14274 phosphate ABC transpo 99.8 6.3E-21 1.4E-25 194.2 13.3 173 400-584 25-227 (259)
241 PRK14270 phosphate ABC transpo 99.8 8.5E-21 1.8E-25 192.3 14.0 173 400-584 17-219 (251)
242 COG4181 Predicted ABC-type tra 99.8 8E-21 1.7E-25 180.1 12.7 169 397-577 20-209 (228)
243 cd03253 ABCC_ATM1_transporter 99.8 4.2E-21 9.1E-26 192.3 11.4 170 400-583 14-207 (236)
244 PRK10261 glutathione transport 99.8 2.7E-21 5.9E-26 220.1 11.4 176 400-584 29-242 (623)
245 PRK14251 phosphate ABC transpo 99.8 8.4E-21 1.8E-25 192.2 13.7 174 400-583 17-218 (251)
246 PRK10419 nikE nickel transport 99.8 4.7E-21 1E-25 196.5 11.9 175 400-584 25-225 (268)
247 cd03233 ABC_PDR_domain1 The pl 99.8 1.1E-20 2.3E-25 186.0 13.6 138 399-560 19-167 (202)
248 COG4598 HisP ABC-type histidin 99.8 6.9E-21 1.5E-25 181.7 11.6 165 396-573 15-210 (256)
249 COG4559 ABC-type hemin transpo 99.8 9.3E-21 2E-25 185.0 12.8 160 399-561 13-191 (259)
250 cd03248 ABCC_TAP TAP, the Tran 99.8 1.1E-20 2.3E-25 188.3 13.6 171 400-583 27-220 (226)
251 PRK14275 phosphate ABC transpo 99.8 7.6E-21 1.6E-25 196.9 12.9 175 400-584 52-254 (286)
252 PRK15134 microcin C ABC transp 99.8 5.6E-21 1.2E-25 213.6 12.4 175 400-583 22-229 (529)
253 PRK14260 phosphate ABC transpo 99.8 7.8E-21 1.7E-25 193.7 12.4 175 400-584 20-222 (259)
254 PRK14237 phosphate transporter 99.8 1.4E-20 3E-25 192.9 14.1 175 400-584 33-235 (267)
255 PRK10982 galactose/methyl gala 99.8 5.9E-21 1.3E-25 211.5 12.3 175 401-584 262-464 (491)
256 cd03290 ABCC_SUR1_N The SUR do 99.8 1E-20 2.3E-25 187.6 12.8 163 400-574 14-205 (218)
257 PRK14238 phosphate transporter 99.8 1.1E-20 2.4E-25 194.1 13.3 175 400-584 37-239 (271)
258 PRK14246 phosphate ABC transpo 99.8 6.3E-21 1.4E-25 194.6 11.4 183 392-584 15-225 (257)
259 TIGR03269 met_CoM_red_A2 methy 99.8 6.3E-21 1.4E-25 212.6 12.3 175 400-584 297-501 (520)
260 PRK14244 phosphate ABC transpo 99.8 2.1E-20 4.6E-25 189.4 14.9 176 399-584 17-221 (251)
261 cd03369 ABCC_NFT1 Domain 2 of 99.8 1.4E-20 3.1E-25 185.2 13.2 139 401-558 22-172 (207)
262 PRK14236 phosphate transporter 99.8 1.1E-20 2.4E-25 194.1 12.7 175 400-584 38-240 (272)
263 cd03213 ABCG_EPDR ABCG transpo 99.8 1.7E-20 3.8E-25 183.4 13.5 155 400-584 22-185 (194)
264 TIGR01257 rim_protein retinal- 99.8 4.4E-21 9.5E-26 237.3 11.5 176 400-584 1952-2143(2272)
265 COG4525 TauB ABC-type taurine 99.8 1E-20 2.2E-25 182.6 11.5 152 400-560 18-181 (259)
266 PRK14253 phosphate ABC transpo 99.8 1.3E-20 2.7E-25 190.7 12.8 175 400-584 16-217 (249)
267 PRK15134 microcin C ABC transp 99.8 6.8E-21 1.5E-25 212.8 11.8 175 400-584 299-499 (529)
268 PRK13541 cytochrome c biogenes 99.8 1.1E-20 2.5E-25 184.5 11.9 145 402-560 16-172 (195)
269 cd03217 ABC_FeS_Assembly ABC-t 99.8 1E-20 2.3E-25 185.7 11.7 152 400-583 13-177 (200)
270 CHL00131 ycf16 sulfate ABC tra 99.8 1.1E-20 2.3E-25 191.3 12.0 175 400-583 20-224 (252)
271 cd03222 ABC_RNaseL_inhibitor T 99.8 1.2E-20 2.6E-25 182.7 11.7 131 400-583 13-144 (177)
272 PRK14239 phosphate transporter 99.8 1.3E-20 2.7E-25 190.8 12.3 175 400-584 18-220 (252)
273 TIGR03269 met_CoM_red_A2 methy 99.8 9.7E-21 2.1E-25 211.1 12.5 176 400-584 13-242 (520)
274 PRK14258 phosphate ABC transpo 99.8 1.3E-20 2.7E-25 192.5 12.3 176 400-584 20-224 (261)
275 PRK13545 tagH teichoic acids e 99.8 8.9E-21 1.9E-25 209.0 11.8 175 400-584 37-216 (549)
276 PRK13546 teichoic acids export 99.8 1.4E-20 3E-25 193.1 11.9 175 398-584 35-216 (264)
277 PRK15177 Vi polysaccharide exp 99.8 1.6E-20 3.4E-25 186.5 12.0 170 402-584 2-176 (213)
278 PRK14261 phosphate ABC transpo 99.8 2.1E-20 4.5E-25 189.6 13.1 175 400-584 19-221 (253)
279 COG3840 ThiQ ABC-type thiamine 99.8 2.5E-20 5.5E-25 178.2 12.5 157 405-573 17-188 (231)
280 cd03223 ABCD_peroxisomal_ALDP 99.8 2.5E-20 5.5E-25 178.0 12.7 124 400-557 14-137 (166)
281 cd03232 ABC_PDR_domain2 The pl 99.8 2.6E-20 5.7E-25 181.8 12.9 155 400-584 20-182 (192)
282 cd03247 ABCC_cytochrome_bd The 99.8 1.6E-20 3.6E-25 180.8 11.3 144 401-582 16-167 (178)
283 PRK14271 phosphate ABC transpo 99.8 2E-20 4.2E-25 192.9 12.5 175 399-584 33-235 (276)
284 PRK14255 phosphate ABC transpo 99.8 2.8E-20 6E-25 188.5 13.1 174 400-583 18-219 (252)
285 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 3E-20 6.5E-25 173.7 11.7 103 401-557 14-116 (144)
286 PRK10938 putative molybdenum t 99.8 1.3E-20 2.8E-25 208.6 10.9 175 400-583 273-475 (490)
287 COG4619 ABC-type uncharacteriz 99.8 3.8E-20 8.3E-25 175.0 11.9 163 398-573 14-192 (223)
288 COG0444 DppD ABC-type dipeptid 99.8 2.5E-20 5.3E-25 192.6 11.1 174 398-583 16-226 (316)
289 PRK14252 phosphate ABC transpo 99.8 4.9E-20 1.1E-24 188.4 13.2 175 400-584 29-233 (265)
290 PRK14264 phosphate ABC transpo 99.8 3.8E-20 8.2E-25 193.4 12.6 172 400-581 58-269 (305)
291 TIGR01257 rim_protein retinal- 99.8 3.2E-20 6.9E-25 229.8 13.3 175 400-584 943-1133(2272)
292 cd03236 ABC_RNaseL_inhibitor_d 99.8 4.2E-20 9.1E-25 188.6 11.9 171 401-583 15-211 (255)
293 PRK14266 phosphate ABC transpo 99.8 6.5E-20 1.4E-24 185.6 13.1 174 400-583 16-217 (250)
294 TIGR02868 CydC thiol reductant 99.8 5.8E-20 1.3E-24 205.1 13.9 154 401-573 349-527 (529)
295 PRK15064 ABC transporter ATP-b 99.8 5.1E-20 1.1E-24 205.9 13.2 171 400-584 14-225 (530)
296 PRK14257 phosphate ABC transpo 99.8 6.5E-20 1.4E-24 193.8 13.1 173 400-584 95-297 (329)
297 cd03288 ABCC_SUR2 The SUR doma 99.8 6.9E-20 1.5E-24 186.6 12.3 169 400-583 34-226 (257)
298 PRK12727 flagellar biosynthesi 99.8 1.6E-19 3.5E-24 198.3 15.7 220 332-589 287-509 (559)
299 COG4161 ArtP ABC-type arginine 99.8 8.3E-20 1.8E-24 171.7 11.5 175 396-583 11-209 (242)
300 PRK11819 putative ABC transpor 99.8 5.1E-20 1.1E-24 207.1 12.0 171 400-584 20-233 (556)
301 COG1129 MglA ABC-type sugar tr 99.8 4.7E-20 1E-24 201.4 10.9 182 391-581 12-215 (500)
302 PLN03211 ABC transporter G-25; 99.8 5.4E-20 1.2E-24 210.4 11.9 177 399-584 80-280 (659)
303 PRK13409 putative ATPase RIL; 99.8 5.1E-20 1.1E-24 208.2 11.5 168 402-584 354-527 (590)
304 PRK15064 ABC transporter ATP-b 99.8 6.3E-20 1.4E-24 205.1 12.0 169 400-584 332-508 (530)
305 cd03238 ABC_UvrA The excision 99.8 1.8E-19 3.9E-24 174.4 13.5 146 398-582 6-159 (176)
306 PRK11819 putative ABC transpor 99.8 1.2E-19 2.6E-24 204.2 14.0 171 399-584 336-515 (556)
307 COG1123 ATPase components of v 99.8 6.6E-20 1.4E-24 201.5 11.2 172 399-583 21-227 (539)
308 PRK10636 putative ABC transpor 99.8 8E-20 1.7E-24 208.6 12.4 172 399-584 13-219 (638)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.3E-19 2.8E-24 203.7 13.5 170 400-584 335-513 (552)
310 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.1E-19 2.4E-24 187.5 12.0 145 400-558 17-185 (275)
311 PRK10636 putative ABC transpor 99.8 8.8E-20 1.9E-24 208.3 12.3 172 399-584 324-500 (638)
312 cd03291 ABCC_CFTR1 The CFTR su 99.8 2E-19 4.4E-24 186.2 13.6 166 400-583 50-230 (282)
313 PRK11174 cysteine/glutathione 99.8 2E-19 4.3E-24 203.2 14.6 144 400-558 363-532 (588)
314 PRK11147 ABC transporter ATPas 99.8 1.5E-19 3.3E-24 206.3 13.7 171 399-584 331-510 (635)
315 cd00267 ABC_ATPase ABC (ATP-bi 99.8 2.2E-19 4.9E-24 169.2 12.0 131 401-583 13-152 (157)
316 COG2274 SunT ABC-type bacterio 99.8 2.4E-19 5.2E-24 205.3 14.2 159 400-575 486-668 (709)
317 TIGR01187 potA spermidine/putr 99.8 1.4E-19 3.1E-24 190.8 11.1 158 420-584 1-174 (325)
318 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.3E-19 2.9E-24 203.5 11.4 171 400-584 18-231 (552)
319 PF00005 ABC_tran: ABC transpo 99.8 1.6E-19 3.4E-24 165.5 9.7 123 403-539 1-137 (137)
320 COG4133 CcmA ABC-type transpor 99.8 2.8E-19 6.1E-24 172.0 11.4 154 397-561 12-180 (209)
321 PRK13409 putative ATPase RIL; 99.8 1.6E-19 3.5E-24 204.2 11.2 186 386-584 75-284 (590)
322 KOG0058 Peptide exporter, ABC 99.8 3E-19 6.4E-24 199.5 12.8 151 398-560 479-653 (716)
323 COG3845 ABC-type uncharacteriz 99.8 2E-19 4.3E-24 193.6 10.9 175 398-581 15-210 (501)
324 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 3.8E-19 8.2E-24 205.3 13.7 145 399-555 491-659 (710)
325 COG1119 ModF ABC-type molybden 99.8 4.3E-19 9.4E-24 177.1 12.0 174 392-576 36-234 (257)
326 PRK11147 ABC transporter ATPas 99.8 2.6E-19 5.7E-24 204.3 11.5 171 399-584 15-226 (635)
327 TIGR02857 CydD thiol reductant 99.8 5.7E-19 1.2E-23 197.1 13.8 145 400-558 335-505 (529)
328 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 5.6E-19 1.2E-23 203.2 13.6 144 399-557 465-634 (686)
329 PRK11176 lipid transporter ATP 99.8 8.4E-19 1.8E-23 197.8 14.6 146 400-558 356-527 (582)
330 PRK11160 cysteine/glutathione 99.8 7.9E-19 1.7E-23 198.2 13.9 168 400-581 353-543 (574)
331 TIGR03375 type_I_sec_LssB type 99.8 1E-18 2.2E-23 201.4 15.0 146 400-559 478-649 (694)
332 COG1123 ATPase components of v 99.8 5.7E-19 1.2E-23 194.2 11.9 173 399-583 303-502 (539)
333 TIGR01842 type_I_sec_PrtD type 99.8 1E-18 2.3E-23 195.9 14.2 171 400-583 331-525 (544)
334 KOG0055 Multidrug/pheromone ex 99.8 1.1E-18 2.4E-23 204.5 14.1 147 399-559 365-537 (1228)
335 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.5E-18 3.2E-23 195.2 14.7 170 401-583 356-542 (555)
336 COG4608 AppF ABC-type oligopep 99.8 1E-18 2.3E-23 177.1 12.0 155 399-583 25-182 (268)
337 PLN03073 ABC transporter F fam 99.8 6.9E-19 1.5E-23 202.8 12.0 169 401-584 523-697 (718)
338 PRK10790 putative multidrug tr 99.8 1.5E-18 3.2E-23 196.4 13.9 145 400-559 354-524 (592)
339 PRK13657 cyclic beta-1,2-gluca 99.8 1.6E-18 3.4E-23 196.1 14.1 145 400-558 348-518 (588)
340 PRK10522 multidrug transporter 99.8 3.2E-18 7E-23 192.1 15.7 144 400-556 336-494 (547)
341 TIGR02203 MsbA_lipidA lipid A 99.8 2.6E-18 5.7E-23 193.2 14.6 148 400-558 345-516 (571)
342 TIGR00955 3a01204 The Eye Pigm 99.8 1.1E-18 2.4E-23 198.7 11.7 177 399-584 37-240 (617)
343 TIGR01193 bacteriocin_ABC ABC- 99.8 2E-18 4.3E-23 199.4 13.6 145 400-557 487-657 (708)
344 PRK10535 macrolide transporter 99.8 1.6E-18 3.4E-23 198.4 12.6 174 400-583 21-215 (648)
345 TIGR00958 3a01208 Conjugate Tr 99.8 2.3E-18 4.9E-23 199.1 13.7 135 400-547 494-654 (711)
346 COG4148 ModC ABC-type molybdat 99.8 1.1E-18 2.4E-23 176.4 9.5 155 405-572 16-186 (352)
347 COG1134 TagH ABC-type polysacc 99.8 2.7E-18 5.9E-23 171.4 12.1 185 386-582 23-218 (249)
348 PRK10789 putative multidrug tr 99.8 2.2E-18 4.8E-23 194.3 12.9 145 400-558 328-498 (569)
349 TIGR01846 type_I_sec_HlyB type 99.8 3.8E-18 8.2E-23 196.6 14.0 166 400-581 470-661 (694)
350 TIGR01192 chvA glucan exporter 99.8 3.9E-18 8.5E-23 193.0 13.8 170 400-583 348-541 (585)
351 TIGR02204 MsbA_rel ABC transpo 99.8 5.3E-18 1.1E-22 191.0 13.6 145 400-558 353-523 (576)
352 COG4988 CydD ABC-type transpor 99.7 7.2E-18 1.6E-22 185.2 13.7 148 401-560 335-505 (559)
353 COG1132 MdlB ABC-type multidru 99.7 5.7E-18 1.2E-22 190.8 13.2 148 399-558 341-512 (567)
354 KOG0057 Mitochondrial Fe/S clu 99.7 7.2E-18 1.6E-22 183.2 12.9 163 400-576 365-551 (591)
355 TIGR00956 3a01205 Pleiotropic 99.7 5E-18 1.1E-22 208.0 12.4 164 400-572 776-963 (1394)
356 PTZ00265 multidrug resistance 99.7 9.1E-18 2E-22 206.2 13.8 175 400-584 398-652 (1466)
357 PTZ00265 multidrug resistance 99.7 1.1E-17 2.4E-22 205.5 14.1 145 400-558 1181-1405(1466)
358 COG4107 PhnK ABC-type phosphon 99.7 2E-17 4.4E-22 157.4 12.5 169 389-573 11-210 (258)
359 KOG0059 Lipid exporter ABCA1 a 99.7 2.5E-18 5.5E-23 202.6 7.5 173 402-583 580-770 (885)
360 KOG0061 Transporter, ABC super 99.7 1.1E-17 2.5E-22 189.8 11.8 163 399-570 42-229 (613)
361 TIGR00954 3a01203 Peroxysomal 99.7 1.6E-17 3.5E-22 190.4 13.0 170 400-584 465-651 (659)
362 PLN03140 ABC transporter G fam 99.7 1.1E-17 2.5E-22 204.8 12.3 175 400-583 893-1092(1470)
363 COG0488 Uup ATPase components 99.7 2.5E-17 5.3E-22 183.4 13.1 170 398-582 14-221 (530)
364 COG4618 ArpD ABC-type protease 99.7 2.4E-17 5.3E-22 177.7 12.6 162 394-573 343-530 (580)
365 KOG0055 Multidrug/pheromone ex 99.7 2.8E-17 6E-22 192.8 14.1 151 398-560 1001-1175(1228)
366 TIGR00956 3a01205 Pleiotropic 99.7 2.8E-17 6.1E-22 201.5 14.8 178 398-584 72-284 (1394)
367 COG4136 ABC-type uncharacteriz 99.7 5.5E-17 1.2E-21 151.2 11.9 160 401-573 16-193 (213)
368 PLN03073 ABC transporter F fam 99.7 1.7E-17 3.7E-22 191.3 9.9 173 399-584 189-414 (718)
369 cd03115 SRP The signal recogni 99.7 6.2E-17 1.3E-21 154.8 11.9 162 416-588 1-163 (173)
370 COG4167 SapF ABC-type antimicr 99.7 6.8E-17 1.5E-21 154.9 12.0 162 399-573 25-208 (267)
371 TIGR00957 MRP_assoc_pro multi 99.7 6.8E-17 1.5E-21 199.8 15.0 145 401-558 1300-1468(1522)
372 PLN03232 ABC transporter C fam 99.7 6E-17 1.3E-21 200.1 14.0 143 401-558 1250-1418(1495)
373 COG4987 CydC ABC-type transpor 99.7 6E-17 1.3E-21 175.9 11.7 170 396-581 347-542 (573)
374 PLN03130 ABC transporter C fam 99.7 7.7E-17 1.7E-21 199.8 14.0 143 401-558 1253-1421(1622)
375 cd03270 ABC_UvrA_I The excisio 99.7 7.6E-17 1.7E-21 161.6 11.2 173 397-584 5-211 (226)
376 cd03278 ABC_SMC_barmotin Barmo 99.7 8.2E-17 1.8E-21 158.3 10.8 162 404-586 14-190 (197)
377 PLN03140 ABC transporter G fam 99.7 6.5E-17 1.4E-21 198.3 11.8 178 398-584 176-411 (1470)
378 COG4172 ABC-type uncharacteriz 99.7 1.8E-16 3.8E-21 167.1 13.3 160 400-572 300-484 (534)
379 COG4172 ABC-type uncharacteriz 99.7 1.3E-16 2.9E-21 168.0 11.9 176 396-583 19-230 (534)
380 COG1101 PhnK ABC-type uncharac 99.7 1E-16 2.3E-21 157.2 10.0 178 399-588 18-223 (263)
381 PTZ00243 ABC transporter; Prov 99.7 2E-16 4.2E-21 195.8 14.9 142 401-557 1324-1492(1560)
382 COG0396 sufC Cysteine desulfur 99.7 1.7E-16 3.7E-21 157.1 11.4 169 400-581 17-210 (251)
383 TIGR01271 CFTR_protein cystic 99.7 2E-16 4.4E-21 195.3 13.5 166 401-583 440-619 (1490)
384 COG4778 PhnL ABC-type phosphon 99.7 1E-16 2.2E-21 152.2 7.7 155 397-560 21-201 (235)
385 TIGR01271 CFTR_protein cystic 99.7 7.4E-16 1.6E-20 190.3 16.0 143 400-558 1232-1400(1490)
386 COG4674 Uncharacterized ABC-ty 99.7 8.3E-17 1.8E-21 155.7 5.9 153 398-559 16-195 (249)
387 KOG0056 Heavy metal exporter H 99.7 3.8E-16 8.1E-21 167.2 11.0 152 399-562 550-725 (790)
388 COG0488 Uup ATPase components 99.6 5.2E-16 1.1E-20 172.8 11.9 170 400-583 335-508 (530)
389 TIGR03499 FlhF flagellar biosy 99.6 1.1E-15 2.4E-20 158.4 13.0 150 334-507 131-282 (282)
390 PTZ00243 ABC transporter; Prov 99.6 8.5E-16 1.8E-20 190.2 13.4 139 400-554 673-826 (1560)
391 TIGR00957 MRP_assoc_pro multi 99.6 7.5E-16 1.6E-20 190.7 12.0 136 401-554 652-804 (1522)
392 PLN03130 ABC transporter C fam 99.6 2E-15 4.4E-20 187.3 15.2 139 401-557 631-787 (1622)
393 PLN03232 ABC transporter C fam 99.6 3.6E-15 7.7E-20 184.5 14.8 141 400-557 630-787 (1495)
394 KOG0065 Pleiotropic drug resis 99.6 9.6E-16 2.1E-20 180.1 4.8 171 398-576 802-1000(1391)
395 COG5265 ATM1 ABC-type transpor 99.6 8.4E-15 1.8E-19 155.3 10.2 154 397-561 273-449 (497)
396 cd03273 ABC_SMC2_euk Eukaryoti 99.6 1.4E-14 2.9E-19 147.3 10.4 155 415-577 25-231 (251)
397 cd03272 ABC_SMC3_euk Eukaryoti 99.5 1.5E-14 3.2E-19 145.6 9.7 83 499-586 153-235 (243)
398 COG4138 BtuD ABC-type cobalami 99.5 3.1E-15 6.6E-20 142.7 4.3 164 403-573 15-194 (248)
399 cd03279 ABC_sbcCD SbcCD and ot 99.5 5.9E-14 1.3E-18 139.3 11.5 168 405-581 19-203 (213)
400 cd03276 ABC_SMC6_euk Eukaryoti 99.5 7.1E-14 1.5E-18 137.6 11.5 165 405-586 14-190 (198)
401 cd03274 ABC_SMC4_euk Eukaryoti 99.5 2E-14 4.2E-19 143.1 5.7 167 397-583 14-201 (212)
402 cd03271 ABC_UvrA_II The excisi 99.5 2.7E-13 5.8E-18 139.2 12.5 89 488-584 151-244 (261)
403 KOG0927 Predicted transporter 99.5 1.4E-13 3.1E-18 149.6 9.2 143 402-555 405-553 (614)
404 cd03240 ABC_Rad50 The catalyti 99.5 2.1E-13 4.5E-18 134.9 9.7 150 417-583 24-194 (204)
405 KOG0066 eIF2-interacting prote 99.4 6.5E-13 1.4E-17 141.0 11.6 129 417-557 615-750 (807)
406 KOG0054 Multidrug resistance-a 99.4 7.5E-13 1.6E-17 158.9 13.4 157 401-576 535-708 (1381)
407 KOG0927 Predicted transporter 99.4 2.7E-13 5.9E-18 147.5 8.7 173 398-581 86-289 (614)
408 KOG0054 Multidrug resistance-a 99.4 1E-12 2.2E-17 157.9 14.1 144 400-556 1153-1320(1381)
409 COG4615 PvdE ABC-type sideroph 99.4 6.3E-13 1.4E-17 140.1 10.7 157 402-575 338-509 (546)
410 cd03275 ABC_SMC1_euk Eukaryoti 99.4 1.4E-12 3E-17 132.4 12.7 144 417-572 24-216 (247)
411 COG1129 MglA ABC-type sugar tr 99.4 1.1E-12 2.3E-17 144.1 11.9 242 329-583 175-473 (500)
412 COG4178 ABC-type uncharacteriz 99.4 1.7E-12 3.8E-17 145.0 11.9 149 395-555 402-559 (604)
413 KOG0062 ATPase component of AB 99.4 7.5E-13 1.6E-17 143.4 7.1 153 397-573 90-253 (582)
414 COG1245 Predicted ATPase, RNas 99.3 2.1E-12 4.5E-17 138.3 8.7 165 403-583 352-528 (591)
415 cd03280 ABC_MutS2 MutS2 homolo 99.3 5.2E-12 1.1E-16 124.2 6.0 132 404-575 18-151 (200)
416 COG1245 Predicted ATPase, RNas 99.3 6.5E-12 1.4E-16 134.6 6.9 160 411-582 98-284 (591)
417 KOG2355 Predicted ABC-type tra 99.2 1.6E-11 3.4E-16 120.2 7.7 160 400-573 27-206 (291)
418 cd03283 ABC_MutS-like MutS-lik 99.2 2.8E-11 6.1E-16 119.4 7.4 36 401-440 15-50 (199)
419 PRK00635 excinuclease ABC subu 99.2 1E-10 2.3E-15 144.1 12.1 81 499-584 804-884 (1809)
420 cd03239 ABC_SMC_head The struc 99.2 1.8E-10 3.9E-15 111.8 11.3 119 417-560 24-147 (178)
421 COG4170 SapD ABC-type antimicr 99.1 6.9E-11 1.5E-15 116.0 7.1 180 394-583 14-231 (330)
422 PRK00349 uvrA excinuclease ABC 99.1 2E-10 4.3E-15 135.8 11.8 78 499-584 825-905 (943)
423 COG3845 ABC-type uncharacteriz 99.1 3.6E-10 7.8E-15 122.7 12.3 243 327-583 168-475 (501)
424 cd03227 ABC_Class2 ABC-type Cl 99.1 3.3E-10 7.1E-15 107.9 10.3 118 416-573 22-139 (162)
425 TIGR00630 uvra excinuclease AB 99.1 2.7E-10 5.8E-15 134.5 11.4 81 499-584 823-903 (924)
426 cd03243 ABC_MutS_homologs The 99.1 1.8E-10 4E-15 113.3 8.1 129 408-577 24-153 (202)
427 KOG0060 Long-chain acyl-CoA tr 99.1 1.2E-09 2.7E-14 120.1 14.6 145 393-546 441-606 (659)
428 cd03277 ABC_SMC5_euk Eukaryoti 99.1 5.5E-10 1.2E-14 111.4 9.7 58 499-559 121-178 (213)
429 TIGR00750 lao LAO/AO transport 99.0 2.7E-09 5.8E-14 111.7 12.9 154 401-577 22-185 (300)
430 PRK09435 membrane ATPase/prote 99.0 1.2E-09 2.7E-14 115.7 9.9 145 412-577 53-207 (332)
431 KOG0062 ATPase component of AB 99.0 1.1E-09 2.4E-14 119.2 8.8 133 417-558 392-529 (582)
432 COG2401 ABC-type ATPase fused 99.0 1.2E-09 2.6E-14 116.3 8.5 161 399-577 395-570 (593)
433 cd03285 ABC_MSH2_euk MutS2 hom 98.9 8.2E-10 1.8E-14 110.9 5.7 110 401-547 18-131 (222)
434 cd03282 ABC_MSH4_euk MutS4 hom 98.9 1.8E-09 4E-14 107.0 7.8 137 400-577 16-153 (204)
435 KOG0064 Peroxisomal long-chain 98.9 3.2E-09 7E-14 115.7 9.6 147 393-550 489-652 (728)
436 cd03281 ABC_MSH5_euk MutS5 hom 98.9 1.3E-08 2.8E-13 101.5 13.2 115 405-559 21-139 (213)
437 smart00534 MUTSac ATPase domai 98.9 4.5E-09 9.8E-14 102.3 7.7 108 417-559 1-109 (185)
438 cd03241 ABC_RecN RecN ATPase i 98.8 1.3E-08 2.7E-13 105.3 10.6 53 504-559 170-222 (276)
439 cd03114 ArgK-like The function 98.8 2E-08 4.3E-13 94.8 10.9 138 417-575 1-148 (148)
440 PTZ00132 GTP-binding nuclear p 98.8 1.4E-08 3E-13 100.4 9.4 44 509-559 157-205 (215)
441 KOG0066 eIF2-interacting prote 98.8 1.2E-09 2.6E-14 116.5 0.7 169 399-579 276-477 (807)
442 smart00053 DYNc Dynamin, GTPas 98.7 4.4E-08 9.4E-13 99.6 10.3 148 417-578 28-206 (240)
443 cd03284 ABC_MutS1 MutS1 homolo 98.7 5E-08 1.1E-12 97.6 10.6 35 402-439 20-54 (216)
444 cd03287 ABC_MSH3_euk MutS3 hom 98.7 9E-08 2E-12 96.3 12.1 136 401-576 19-155 (222)
445 TIGR01069 mutS2 MutS2 family p 98.7 2.1E-08 4.7E-13 117.0 7.0 132 406-576 314-446 (771)
446 KOG0065 Pleiotropic drug resis 98.7 4.3E-08 9.4E-13 116.7 9.1 154 398-560 126-309 (1391)
447 COG1703 ArgK Putative periplas 98.7 2E-07 4.4E-12 96.3 12.5 144 412-576 48-201 (323)
448 KOG0063 RNAse L inhibitor, ABC 98.6 9.4E-08 2E-12 102.4 7.6 130 403-550 352-496 (592)
449 PF03308 ArgK: ArgK protein; 98.6 1.9E-07 4.1E-12 95.2 8.7 144 412-576 26-179 (266)
450 PRK13768 GTPase; Provisional 98.5 1E-06 2.2E-11 90.2 12.2 161 415-578 2-176 (253)
451 PF02463 SMC_N: RecF/RecN/SMC 98.5 1.2E-06 2.6E-11 86.9 11.1 66 504-577 136-201 (220)
452 cd00820 PEPCK_HprK Phosphoenol 98.4 2.8E-07 6E-12 82.5 5.1 45 401-453 3-47 (107)
453 TIGR02858 spore_III_AA stage I 98.4 1.2E-06 2.7E-11 90.6 10.5 38 416-453 112-149 (270)
454 cd01124 KaiC KaiC is a circadi 98.4 1.3E-06 2.9E-11 83.8 9.8 134 417-573 1-138 (187)
455 cd03242 ABC_RecF RecF is a rec 98.4 1.4E-06 3E-11 89.9 9.7 49 505-555 184-236 (270)
456 PRK00635 excinuclease ABC subu 98.4 1.2E-06 2.6E-11 109.0 10.8 62 500-565 1695-1756(1809)
457 PRK00409 recombination and DNA 98.4 4.3E-07 9.4E-12 106.5 6.1 122 416-576 328-451 (782)
458 COG0178 UvrA Excinuclease ATPa 98.3 4.2E-06 9E-11 95.9 12.1 61 501-565 819-879 (935)
459 TIGR03238 dnd_assoc_3 dnd syst 98.3 6.5E-07 1.4E-11 98.4 5.2 49 402-454 21-70 (504)
460 PRK12337 2-phosphoglycerate ki 98.3 1.7E-06 3.8E-11 94.9 7.6 108 338-455 179-291 (475)
461 cd01120 RecA-like_NTPases RecA 98.3 5.5E-06 1.2E-10 76.4 9.8 37 417-453 1-37 (165)
462 cd03286 ABC_MSH6_euk MutS6 hom 98.2 4.8E-06 1E-10 83.6 9.7 133 401-573 18-151 (218)
463 TIGR00101 ureG urease accessor 98.2 2.8E-06 6E-11 84.0 7.8 39 415-454 1-39 (199)
464 PF07015 VirC1: VirC1 protein; 98.2 1.5E-05 3.3E-10 80.3 12.5 131 424-575 11-151 (231)
465 PRK08533 flagellar accessory p 98.2 8.1E-06 1.8E-10 82.5 10.5 127 410-560 21-152 (230)
466 TIGR00073 hypB hydrogenase acc 98.2 7.3E-06 1.6E-10 81.1 9.1 141 412-578 19-162 (207)
467 cd02023 UMPK Uridine monophosp 98.2 2.8E-06 6E-11 83.1 5.9 110 417-543 1-113 (198)
468 PRK13695 putative NTPase; Prov 98.2 4.5E-06 9.7E-11 80.2 7.1 119 417-561 2-126 (174)
469 PRK07721 fliI flagellum-specif 98.1 1.3E-05 2.9E-10 88.2 11.1 51 400-453 146-196 (438)
470 cd01130 VirB11-like_ATPase Typ 98.1 2.8E-06 6.1E-11 82.7 5.1 42 408-451 20-61 (186)
471 smart00382 AAA ATPases associa 98.1 1.7E-05 3.6E-10 70.0 9.5 37 417-453 4-40 (148)
472 cd03112 CobW_like The function 98.1 1.6E-05 3.4E-10 75.7 9.7 145 417-576 2-158 (158)
473 PRK06793 fliI flagellum-specif 98.1 1.4E-05 3E-10 87.6 10.3 113 400-544 144-262 (432)
474 COG3910 Predicted ATPase [Gene 98.1 2.5E-05 5.4E-10 76.3 10.3 131 416-562 38-179 (233)
475 PF03029 ATP_bind_1: Conserved 98.1 1.6E-05 3.4E-10 80.9 9.4 151 420-578 1-170 (238)
476 TIGR00554 panK_bact pantothena 98.0 4.4E-06 9.6E-11 87.3 4.9 42 413-454 60-103 (290)
477 KOG0063 RNAse L inhibitor, ABC 98.0 6.1E-06 1.3E-10 88.8 5.2 157 411-580 98-282 (592)
478 PF00009 GTP_EFTU: Elongation 98.0 1E-05 2.2E-10 78.6 6.0 129 417-577 5-135 (188)
479 PRK04220 2-phosphoglycerate ki 98.0 1.9E-05 4.2E-10 82.7 8.1 103 344-455 24-128 (301)
480 PF02881 SRP54_N: SRP54-type p 98.0 5.9E-05 1.3E-09 62.7 9.5 71 317-390 5-75 (75)
481 PRK09270 nucleoside triphospha 97.9 9.1E-06 2E-10 81.7 4.7 43 412-454 30-73 (229)
482 cd00879 Sar1 Sar1 subfamily. 97.9 3.2E-05 6.9E-10 74.4 8.1 32 403-437 10-41 (190)
483 cd04155 Arl3 Arl3 subfamily. 97.9 1.7E-05 3.6E-10 74.8 6.1 24 415-438 14-37 (173)
484 PRK10463 hydrogenase nickel in 97.9 2.6E-05 5.6E-10 81.4 7.7 135 417-578 106-244 (290)
485 PF13304 AAA_21: AAA domain; P 97.9 2.6E-05 5.6E-10 75.5 6.9 51 504-559 236-287 (303)
486 cd00881 GTP_translation_factor 97.9 4.4E-05 9.5E-10 72.4 8.2 127 418-578 2-128 (189)
487 cd01888 eIF2_gamma eIF2-gamma 97.9 5E-05 1.1E-09 74.8 8.7 23 417-439 2-24 (203)
488 cd01128 rho_factor Transcripti 97.9 5.7E-05 1.2E-09 77.4 9.3 34 408-443 11-44 (249)
489 PRK09866 hypothetical protein; 97.8 3.7E-05 8.1E-10 87.1 8.2 73 498-578 230-303 (741)
490 COG1159 Era GTPase [General fu 97.8 6.6E-05 1.4E-09 77.9 8.8 121 417-580 8-130 (298)
491 PLN02796 D-glycerate 3-kinase 97.8 4.7E-05 1E-09 81.2 8.0 103 329-454 31-139 (347)
492 cd04160 Arfrp1 Arfrp1 subfamil 97.8 5.6E-05 1.2E-09 70.7 7.5 23 418-440 2-24 (167)
493 cd00880 Era_like Era (E. coli 97.8 6.4E-05 1.4E-09 67.7 7.5 69 497-578 44-118 (163)
494 cd04159 Arl10_like Arl10-like 97.8 5.4E-05 1.2E-09 69.0 7.0 21 418-438 2-22 (159)
495 PTZ00035 Rad51 protein; Provis 97.8 0.00021 4.6E-09 76.3 12.3 130 315-457 30-167 (337)
496 PRK00349 uvrA excinuclease ABC 97.8 3.9E-05 8.5E-10 91.6 7.3 78 499-584 484-563 (943)
497 PRK00089 era GTPase Era; Revie 97.8 0.00014 3E-09 75.5 10.5 118 417-577 7-126 (292)
498 TIGR00630 uvra excinuclease AB 97.8 4.6E-05 1E-09 90.8 7.5 78 499-584 482-561 (924)
499 PHA02518 ParA-like protein; Pr 97.8 0.00023 4.9E-09 69.6 11.2 142 417-576 2-145 (211)
500 PRK06067 flagellar accessory p 97.7 0.00017 3.7E-09 72.5 10.5 41 410-452 22-62 (234)
No 1
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-101 Score=811.03 Aligned_cols=536 Identities=48% Similarity=0.750 Sum_probs=413.4
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccCCCceeecCCCCceeeeeEeecccceEEEEEeccccc
Q 007747 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (591)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~v~leer~~~~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l~ 80 (591)
|||+|.||||||+||||++.....+.+ |||+||++||+|||++..+|.++ .|||||+++|+++||||+|||+|++
T Consensus 1 Mld~faIFtkgG~vLw~~~~~~~~~~~-~in~lI~~~ll~er~~~~~~~~~----~yTlk~q~~N~~~lvfvvvfqki~~ 75 (587)
T KOG0781|consen 1 MLDQFAIFTKGGLVLWCYQEVGDNLKG-PINALIRSVLLSERGGVNSFTFE----AYTLKYQLDNQYSLVFVVVFQKILT 75 (587)
T ss_pred CcceeeeecCCcEEEEEecccchhccc-hHHHHHHHHHHHhhcCcccCchh----heeEeeeecCCccEEEEEEEeccch
Confidence 999999999999999998877666677 99999999999999999999999 9999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhcCCcC--CCccchHHHHHHHHHHHHHHHHHh----hcccccCCCCCcccccCCCCcCCCCcc
Q 007747 81 LLYVDDLLAMMKQSFSEIYDPKR--TDYSDFDEMFRQLRKEAEARAEEL----KKSKQVTKPMNNLKKQGGQLQKGGFER 154 (591)
Q Consensus 81 l~yvd~ll~~v~~~f~~~y~~~~--~~~~~f~~~f~~~l~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (591)
|.|+|+||++++..|+..|.+.. ..+-.|.+.|..+|+......... +.|..+. .++.+++.........
T Consensus 76 L~yv~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~rq~~ne~t~~k~~~pi~~~---~~~~~~K~~~~v~~~~- 151 (587)
T KOG0781|consen 76 LTYVDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKLRQVANEATEYKIRAPITMK---KSEDLEKAKDPVRSPI- 151 (587)
T ss_pred hhhHHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHHhhcccccchhhhcccchhh---hhhcchhhhhhhcccc-
Confidence 99999999999999999998643 334455666667766544321111 1122221 1222222111000000
Q ss_pred cCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccccccccccCCCCCCCCCCcchhchHHHHHhhccCCCCcccccCC
Q 007747 155 GSNRSGGGSANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSK 234 (591)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (591)
+.. .+..+++.. +..+++. .+...+ ..++++-+..++++ ...
T Consensus 152 e~~-------~d~s~kk~~------nt~kng~----------------~~~~h~------~~~kk~~~~tkkKg---~~s 193 (587)
T KOG0781|consen 152 ETN-------GDKSAKKKK------NTKKNGA----------------KKEGHD------EEFKKKHRETKKKG---NKS 193 (587)
T ss_pred ccc-------cccchhccc------ccccCCC----------------cccchh------hhhhhhhccccccc---ccC
Confidence 000 000000000 0111111 000000 11222211111110 011
Q ss_pred CCCCCCCCccccCCccCCCCC--CCCCCccCCCCCCCCC----ccchhhhhcCCCCc-ccccccCCCCcchhhhhhcCCC
Q 007747 235 GSNPDPKKKITKKNRVWDDSP--PESKLDFTDPAGGNGS----NIEVEAADHGESMM-DKEEVFSSDSESEEDEEVGKHN 307 (591)
Q Consensus 235 ~~~~~~~~k~~k~~r~w~~~~--~~~~ld~s~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 307 (591)
++...|++|.+|++|+||+++ +.+.||||++..++.. .++......+.|.. +++-+.+++++ .++++ ..+.
T Consensus 194 ~~~~~p~kKGkk~~RvWdd~g~~d~~~ld~sss~sn~e~a~~e~vn~~~~~s~~~~~~~l~~~~~d~~~-s~~~~-~~~~ 271 (587)
T KOG0781|consen 194 TKVDAPKKKGKKAPRVWDDAGCEDEKVLDYSSSTSNGENALSETVNLDQGESMGGQLQDLDKDSSDDEG-SADNS-TDPA 271 (587)
T ss_pred CCCCCchhhcccccchhhhccchhhcccccCCccccccchhHHHhhhhhhccccccccccccccccccc-ccccc-cchh
Confidence 222344566666799999876 5788999998876532 22222222222222 12222111111 11111 1112
Q ss_pred CCCCcccchHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHH
Q 007747 308 KPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAME 387 (591)
Q Consensus 308 ~~~~~~~g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~ 387 (591)
...+..+||| +||++++|++.|.++|+.|+|++|++||+.+||++++|++||++|...|.|+++++|+++.++|+++|+
T Consensus 272 ~~~k~~g~aF-g~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~ 350 (587)
T KOG0781|consen 272 ATKKTVGGAF-GLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALR 350 (587)
T ss_pred hhhcchhhHH-HHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 2344557777 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhh
Q 007747 388 EALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR 467 (591)
Q Consensus 388 ~~L~~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~ 467 (591)
++|++||+|.+++++|++|.-....++||+|+|||+|||||||+|+|||+||..++.+|+|++|||||.||||||++|.+
T Consensus 351 daLvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~ 430 (587)
T KOG0781|consen 351 DALVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVE 430 (587)
T ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred hc------ccceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 468 RL------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 468 ~l------~v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
+| .|++|+.+|++|++.++++|++++..+++|++++||+||||.+.+||++|.+|+.++.||+||+|+|+++|.
T Consensus 431 rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~ 510 (587)
T KOG0781|consen 431 RLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN 510 (587)
T ss_pred HHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc
Confidence 99 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
|+++|+..||++|.+.. .++.|++|++||||+++|++|+ ++|+|-
T Consensus 511 dsv~q~~~fn~al~~~~---~~r~id~~~ltk~dtv~d~vg~~~~m~y~ 556 (587)
T KOG0781|consen 511 DSVDQLKKFNRALADHS---TPRLIDGILLTKFDTVDDKVGAAVSMVYI 556 (587)
T ss_pred HHHHHHHHHHHHHhcCC---CccccceEEEEeccchhhHHHHHhhheee
Confidence 99999999999998766 5789999999999999999999 999984
No 2
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.7e-41 Score=348.36 Aligned_cols=244 Identities=40% Similarity=0.590 Sum_probs=215.5
Q ss_pred cCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-hcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccc
Q 007747 329 NLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAAS-LEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH 407 (591)
Q Consensus 329 ~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~-l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is 407 (591)
...+.+.+..+++|++.|+++||+.+++..||+.+++. ...+++.+ ...++.+|.+.|..++.|....+....+
T Consensus 59 ~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~~----~~~v~~~l~~~l~~il~~~~~~~~~~~~- 133 (340)
T COG0552 59 KIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKIKD----EETVKEALREALIEILRPVDKVDLPLEI- 133 (340)
T ss_pred ccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccCCC----HHHHHHHHHHHHHHHhcccccccchhhh-
Confidence 44556778899999999999999999999999999985 33333322 6788999999999999876543322221
Q ss_pred cccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHH
Q 007747 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (591)
Q Consensus 408 ~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~ 487 (591)
...++|++++|||+||+||||+++|||.|++..+.+|+++++||||+||++||..|++++++++....++.||+.++.
T Consensus 134 --~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVaf 211 (340)
T COG0552 134 --PKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAF 211 (340)
T ss_pred --ccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHH
Confidence 225679999999999999999999999999999999999999999999999999999999999988668999999999
Q ss_pred HHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcE------EEEEecccCCCCHHHHHHHHHHHHHHhhcCC
Q 007747 488 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL------VLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 488 ~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl------ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~ 561 (591)
+|++++...++|++++|||||+|.+..||.+|.|+.++.+|+. +|+|.|+|.|+|++.|.+.|++++
T Consensus 212 DAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav------- 284 (340)
T COG0552 212 DAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV------- 284 (340)
T ss_pred HHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999877665 888779999999999999998875
Q ss_pred CCccceEEEeccccccCCcEEE-EEecccc
Q 007747 562 NPQLIDGILLTKFDTIDDKHYQ-WSMCREL 590 (591)
Q Consensus 562 ~~~~it~IIlTK~D~i~d~vGa-ls~~~~~ 590 (591)
.+||+|+||+|. ..++|+ ++|+|++
T Consensus 285 ---~l~GiIlTKlDg-tAKGG~il~I~~~l 310 (340)
T COG0552 285 ---GLDGIILTKLDG-TAKGGIILSIAYEL 310 (340)
T ss_pred ---CCceEEEEeccc-CCCcceeeeHHHHh
Confidence 899999999998 689999 9999864
No 3
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-39 Score=344.83 Aligned_cols=257 Identities=32% Similarity=0.518 Sum_probs=239.5
Q ss_pred chHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007747 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (591)
Q Consensus 315 g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 394 (591)
..|++.|+.+.|...+++++++.++++++.+|+++||+..++..++++|+++..|.++..-.++.+.|.+++.++|++++
T Consensus 7 ~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~ll 86 (451)
T COG0541 7 DRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLL 86 (451)
T ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999988878888999999999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhccccee
Q 007747 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (591)
Q Consensus 395 ~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~ 474 (591)
+... . .+++ ....|.+|.+||..||||||+++|||.|++..+.+|++++||+||.||++||+++++..++++|
T Consensus 87 G~~~-~----~~~l--~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 87 GGEN-S----ELNL--AKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCCC-c----cccc--CCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 8621 1 2233 3567899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q 007747 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L 554 (591)
....+.+|..++.++++.++...+|++++|||||.+....||.+|..+..+.+|+.+|||-+++.|+|+++++..|++.+
T Consensus 160 ~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 160 GSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc
Confidence 98778899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 555 ADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
.++++|+||+|. +.++|+ ||+++.
T Consensus 240 ----------~itGvIlTKlDG-daRGGaALS~~~~ 264 (451)
T COG0541 240 ----------GITGVILTKLDG-DARGGAALSARAI 264 (451)
T ss_pred ----------CCceEEEEcccC-CCcchHHHhhHHH
Confidence 899999999999 788888 999864
No 4
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=100.00 E-value=2.5e-39 Score=333.51 Aligned_cols=114 Identities=53% Similarity=0.832 Sum_probs=71.2
Q ss_pred CChhHHHHHhhhhccccCCCceeecCCCCceeeeeEeecccceEEEEEeccccchhcHHHHHHHHHHHHHHhcCCcC---
Q 007747 27 GSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKR--- 103 (591)
Q Consensus 27 ~~~in~li~~v~leer~~~~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l~l~yvd~ll~~v~~~f~~~y~~~~--- 103 (591)
++|||+|||+||||||+++++|+|| +|+|||+|+|||+||||||||+||||+|||+||++|+++|+++|++.+
T Consensus 1 ~~~in~LI~~vlleeR~~~~~~~~d----~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~ 76 (279)
T PF04086_consen 1 TSPINALIRDVLLEERSGNSSFTYD----NYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQL 76 (279)
T ss_dssp --HHHHHHHHTGGG-----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSS
T ss_pred CchHHHHHHHhheeeccCCCceeEc----CEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 4899999999999999999999999 999999999999999999999999999999999999999999999864
Q ss_pred ------CCccchHHHHHHHHHHHHHHHHHhhc-ccccCCCCCcccccCCCC
Q 007747 104 ------TDYSDFDEMFRQLRKEAEARAEELKK-SKQVTKPMNNLKKQGGQL 147 (591)
Q Consensus 104 ------~~~~~f~~~f~~~l~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~ 147 (591)
..|.+||++|+++|+++|+++...++ ++.|+ +|++++++++
T Consensus 77 ~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~~~~~~~~---~~~~s~k~~~ 124 (279)
T PF04086_consen 77 KPNTSINEYFDFDEEFDQLLKELEARSKSQKRSPKAMR---SFEESKKSKK 124 (279)
T ss_dssp STHHHHT-----HHHHHHHHHHHCCCTT-----------------------
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhccccccccccc---cccccccccc
Confidence 24669999999999999998776443 44553 5777777665
No 5
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-36 Score=312.08 Aligned_cols=259 Identities=29% Similarity=0.476 Sum_probs=240.3
Q ss_pred cchHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Q 007747 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (591)
Q Consensus 314 ~g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~i 393 (591)
++.+.+.|+.+.....+++..++.+|++|..+|+++||++.++.+|.+++++.+...++..--+....|++++.++|+++
T Consensus 7 GrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl 86 (483)
T KOG0780|consen 7 GRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKL 86 (483)
T ss_pred chhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999988877776777889999999999999
Q ss_pred cCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccce
Q 007747 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 473 (591)
Q Consensus 394 l~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l 473 (591)
+.|..+ .|....++|.||.|||.+|+||||++.++|++++..+.++.+++.||||+||..||+..+....||+
T Consensus 87 ~dp~~~-------~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ 159 (483)
T KOG0780|consen 87 LDPGKS-------ALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPF 159 (483)
T ss_pred hCCCCc-------ccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCee
Confidence 998543 2445688999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHH
Q 007747 474 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (591)
Q Consensus 474 ~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 553 (591)
|..+...+|..++.+.++.++.+++|++++|||||.+|...|+.+|.++.++.+|+.+|||.++..|+.+.+|.+.|++.
T Consensus 160 ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 160 YGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred EecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred HHHhhcCCCCccceEEEeccccccCCcEEEEEeccc
Q 007747 554 LADLSSSPNPQLIDGILLTKFDTIDDKHYQWSMCRE 589 (591)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~D~i~d~vGals~~~~ 589 (591)
+ .++++|+||+|..+..+|+||++..
T Consensus 240 v----------dvg~vIlTKlDGhakGGgAlSaVaa 265 (483)
T KOG0780|consen 240 V----------DVGAVILTKLDGHAKGGGALSAVAA 265 (483)
T ss_pred h----------ccceEEEEecccCCCCCceeeehhh
Confidence 4 8999999999998766666998754
No 6
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=3.2e-36 Score=324.80 Aligned_cols=257 Identities=25% Similarity=0.434 Sum_probs=230.4
Q ss_pred chHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007747 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (591)
Q Consensus 315 g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 394 (591)
..|.+.|+++.|.+.||++++++++++++.+|+++||+.+++.+|++++++.+.|.++....+....+.+.+.++|++++
T Consensus 7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l 86 (429)
T TIGR01425 7 SSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLV 86 (429)
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999999999999999999999888877777777889999999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhccccee
Q 007747 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (591)
Q Consensus 395 ~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~ 474 (591)
.+.... + ....+.|++++|+|++||||||++++||.++...+.+|.++++|+||+|+++|++++++.+++|++
T Consensus 87 ~~~~~~-----~--~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 87 DPGVEA-----F--TPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY 159 (429)
T ss_pred CCCCcc-----c--cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE
Confidence 764321 2 233567889999999999999999999999987778999999999999999999999999999998
Q ss_pred ecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q 007747 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L 554 (591)
......++..++.++++.+...++|++++||+||.+.+..++.+|.++....+|+.++||.+++.|+++.+++..|++.
T Consensus 160 ~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~- 238 (429)
T TIGR01425 160 GSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS- 238 (429)
T ss_pred eecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-
Confidence 7666678888888888888777899999999999999999999999999999999999999999999999999888654
Q ss_pred HHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 555 ADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
..++++|+||+|+ +.++|+ ||+++.
T Consensus 239 ---------~~~~g~IlTKlD~-~argG~aLs~~~~ 264 (429)
T TIGR01425 239 ---------VDVGSVIITKLDG-HAKGGGALSAVAA 264 (429)
T ss_pred ---------cCCcEEEEECccC-CCCccHHhhhHHH
Confidence 3799999999999 567888 998764
No 7
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=1.1e-35 Score=313.00 Aligned_cols=259 Identities=44% Similarity=0.694 Sum_probs=227.7
Q ss_pred cccchHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHH
Q 007747 312 KKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALV 391 (591)
Q Consensus 312 ~~~g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~ 391 (591)
...|+|.++.... ++++++++.+++++..|+++||+.++++.|++.+++.+.|.++..+.+....++.++.+.|.
T Consensus 45 ~~~~~~~~~~~~~-----~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 119 (336)
T PRK14974 45 EKPGFFDKAKITE-----IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALL 119 (336)
T ss_pred cccCHHHHHHhcc-----cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHH
Confidence 4678887665333 89999999999999999999999999999999999999998888887888889999999999
Q ss_pred HHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhccc
Q 007747 392 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (591)
Q Consensus 392 ~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v 471 (591)
+++.+....+.+..+ ...++|++++|+||||+||||++++||.++...+.+|.+.++|+||+|+++|++.+++.+++
T Consensus 120 ~~l~~~~~~~~~~~~---~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 120 EVLSVGDLFDLIEEI---KSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred HHhCCCcchhhhhhh---hccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCC
Confidence 999754322211111 12456889999999999999999999999998888999999999999999999999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
+++...++.++..++.++++++...++|++++||+|+++.+..+|.+|.++....+|+.++||.+++.|.|...+...|+
T Consensus 197 ~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 197 KVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred ceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 99888888899888889998888888999999999999999999999999999999999999999999999999988886
Q ss_pred HHHHHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
+. ..++++|+||+|+ +.++|+ ||+++.
T Consensus 277 ~~----------~~~~giIlTKlD~-~~~~G~~ls~~~~ 304 (336)
T PRK14974 277 EA----------VGIDGVILTKVDA-DAKGGAALSIAYV 304 (336)
T ss_pred hc----------CCCCEEEEeeecC-CCCccHHHHHHHH
Confidence 54 3789999999999 578888 998775
No 8
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=301.61 Aligned_cols=256 Identities=34% Similarity=0.533 Sum_probs=225.7
Q ss_pred hHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007747 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (591)
Q Consensus 316 ~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~ 395 (591)
.|++.|+++.|++.++++++++.+++++.+|+++||+.+++.+|++.+++.+.+.++....+..+.+..++.++|.+++.
T Consensus 8 ~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~ 87 (433)
T PRK10867 8 RLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILG 87 (433)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhC
Confidence 47789999999999999999999999999999999999999999999999988877665555667789999999999997
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-CcEEEEcccccceeeeecchhhhhhhccccee
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~ 474 (591)
+... .+. +..+.|++++|+||+||||||++++||.++... +.+|+++++|+||+++++|+.++++..+++++
T Consensus 88 ~~~~-----~~~--~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 88 GENS-----ELN--LAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred CCcc-----eee--ecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 5321 122 234668899999999999999999999988877 78999999999999999999999999999998
Q ss_pred ecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q 007747 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L 554 (591)
......++..++.++++.+...++|++++||+|+.+.+..++.+|.++....+|+.+|||.++++|.|.+.++..|++.
T Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~- 239 (433)
T PRK10867 161 PSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEA- 239 (433)
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhh-
Confidence 7766778888888888888778899999999999999999999999999989999999999999999999998888643
Q ss_pred HHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 555 ADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
..++++|+||+|+ +.++|+ +|+++.
T Consensus 240 ---------~~i~giIlTKlD~-~~rgG~alsi~~~ 265 (433)
T PRK10867 240 ---------LGLTGVILTKLDG-DARGGAALSIRAV 265 (433)
T ss_pred ---------CCCCEEEEeCccC-cccccHHHHHHHH
Confidence 3789999999999 577888 887654
No 9
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.98 E-value=9.1e-32 Score=291.43 Aligned_cols=257 Identities=30% Similarity=0.529 Sum_probs=224.5
Q ss_pred chHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007747 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (591)
Q Consensus 315 g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 394 (591)
..|++.|+++.|.+.+|++++++.+++++.+|+++||+.+++.+|++.+++.+.|.++....+....+..++.++|.+++
T Consensus 6 ~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l 85 (428)
T TIGR00959 6 ERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAIL 85 (428)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999998887766555566778899999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-cCCcEEEEcccccceeeeecchhhhhhhcccce
Q 007747 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 473 (591)
Q Consensus 395 ~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l 473 (591)
.+... .+ ....+.|++++|+|++|+||||++++||.++. ..+.+|.+++||+||+++++|+..+++.+++|+
T Consensus 86 ~~~~~-----~~--~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~ 158 (428)
T TIGR00959 86 GGENA-----SL--NLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV 158 (428)
T ss_pred CCCCc-----cc--ccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce
Confidence 75421 12 22356789999999999999999999998876 467899999999999999999999999999998
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHH
Q 007747 474 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (591)
Q Consensus 474 ~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 553 (591)
+......++..++.++++.+...++|++++||+|+.+.+..++.+|.++....+|+.++||-++++|.|...++..|++.
T Consensus 159 ~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~ 238 (428)
T TIGR00959 159 FALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNER 238 (428)
T ss_pred EecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhh
Confidence 87666678888888888887778899999999999999999999999999999999999999999999999988777543
Q ss_pred HHHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 554 LADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
+.++++|+||+|+ +.++|+ +++++.
T Consensus 239 ----------v~i~giIlTKlD~-~~~~G~~lsi~~~ 264 (428)
T TIGR00959 239 ----------LGLTGVVLTKLDG-DARGGAALSVRSV 264 (428)
T ss_pred ----------CCCCEEEEeCccC-cccccHHHHHHHH
Confidence 3789999999998 577888 887654
No 10
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.98 E-value=1.4e-31 Score=290.78 Aligned_cols=253 Identities=28% Similarity=0.421 Sum_probs=219.9
Q ss_pred hHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007747 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (591)
Q Consensus 316 ~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~ 395 (591)
.|++.|+++.|++.||++++++++++++.+|+++||+.+++.+|++.+++.+.+.++....+..+.+.+.+.++|.+++.
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~ 83 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLG 83 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhC
Confidence 47789999999999999999999999999999999999999999999999988877665556667788899999999997
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceee
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~ 475 (591)
+.... +.+ .+.|++++|+|++|+||||++++||.++...+.+|.++++|+||+++++|++.+++.+++|++.
T Consensus 84 ~~~~~-----~~~---~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~ 155 (437)
T PRK00771 84 EETEP-----LVL---PLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYG 155 (437)
T ss_pred CCccc-----ccc---CCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 54321 111 2468899999999999999999999998877789999999999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q 007747 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~ 555 (591)
.....++..++.++++.+.. +|++++||+|+.+....++.+|..+.....|+.++||-+++.|.|.+++...|++.
T Consensus 156 ~~~~~d~~~i~~~al~~~~~--~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~-- 231 (437)
T PRK00771 156 DPDNKDAVEIAKEGLEKFKK--ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEA-- 231 (437)
T ss_pred cCCccCHHHHHHHHHHHhhc--CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhc--
Confidence 65567777778888877643 59999999999999999999999998889999999999999999998887777543
Q ss_pred HhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 556 DLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 556 ~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
+.++++|+||+|+ +.++|+ ||+++.
T Consensus 232 --------l~i~gvIlTKlD~-~a~~G~~ls~~~~ 257 (437)
T PRK00771 232 --------VGIGGIIITKLDG-TAKGGGALSAVAE 257 (437)
T ss_pred --------CCCCEEEEecccC-CCcccHHHHHHHH
Confidence 3789999999999 577888 998764
No 11
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.97 E-value=9e-31 Score=274.67 Aligned_cols=247 Identities=34% Similarity=0.543 Sum_probs=204.3
Q ss_pred HHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCC
Q 007747 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396 (591)
Q Consensus 317 ~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~ 396 (591)
|..-+.++.+++.++++ .+++++++|+++||+++++++|++.+++.+.+....+ ...++..+.+.|.+++.+
T Consensus 31 ~~~~~~~l~~~~~~~~~----~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~ 102 (318)
T PRK10416 31 FGEGINGLFAKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKRKNLKD----PEELKELLKEELAEILEP 102 (318)
T ss_pred HHHHHHHHhCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHHHhCc
Confidence 33455666666778875 6689999999999999999999999998876654432 346788889999998864
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeec
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~ 476 (591)
... .+. ...++|.+++|+||||+||||++++||+++.+.+++|.+.++|+||+++++|+..+++..+++++..
T Consensus 103 ~~~-----~~~--~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~ 175 (318)
T PRK10416 103 VEK-----PLN--IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175 (318)
T ss_pred CCc-----ccc--ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence 221 122 2234466999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhc------CCCcEEEEEecccCCCCHHHHHHHH
Q 007747 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 477 ~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~------~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
..+.++...+.+++..+...++|++++||+|+++.+..+|.+|.++..+ ..|+.++||.+++.|.+...+...|
T Consensus 176 ~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 176 KEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 6777887777777777777889999999999999999999999988764 4688889999999999999988777
Q ss_pred HHHHHHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
++. ..++++|+||+|+. .++|. +++++.
T Consensus 256 ~~~----------~~~~giIlTKlD~t-~~~G~~l~~~~~ 284 (318)
T PRK10416 256 HEA----------VGLTGIILTKLDGT-AKGGVVFAIADE 284 (318)
T ss_pred Hhh----------CCCCEEEEECCCCC-CCccHHHHHHHH
Confidence 543 37999999999985 67887 887654
No 12
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.96 E-value=2.3e-29 Score=258.86 Aligned_cols=234 Identities=40% Similarity=0.562 Sum_probs=195.5
Q ss_pred chHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccC
Q 007747 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR 413 (591)
Q Consensus 334 dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~G 413 (591)
.+++++++++..|+++||+++++++|++.+.+.+.+.+.... ..+...+.+.|.+++.+.. ..+....+
T Consensus 2 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~e~l~~~~~~~~-------~~~~~~~~ 70 (272)
T TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDA----ELLKEILKEYLKEILKETD-------LELIVEEN 70 (272)
T ss_pred ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCH----HHHHHHHHHHHHHHHcccc-------hhhcccCC
Confidence 356789999999999999999999999999998877665542 3456667777777775421 11222245
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~ 493 (591)
+|++++|+||+|+||||++++||.++...+.+|.++++|+||+++++|+..|++..+++++...++.++...+.+++..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 67799999999999999999999999888889999999999999999999999999999887677778877777777777
Q ss_pred hhcCCCcchhccchhHHHHHHHHHHHHhchhcCC------CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccce
Q 007747 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNN------PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567 (591)
Q Consensus 494 ~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~------PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it 567 (591)
...++|++++||+|+.+.+..++.+|.++....+ |+.++||..++.|.+...+...|.+. ..++
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~----------~~~~ 220 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEA----------VGLT 220 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhh----------CCCC
Confidence 7788999999999999999999999999888777 99999999999999988887766433 3689
Q ss_pred EEEeccccccCCcEEE-EEeccc
Q 007747 568 GILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 568 ~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
++|+||+|+ +.++|. +++++.
T Consensus 221 g~IlTKlDe-~~~~G~~l~~~~~ 242 (272)
T TIGR00064 221 GIILTKLDG-TAKGGIILSIAYE 242 (272)
T ss_pred EEEEEccCC-CCCccHHHHHHHH
Confidence 999999999 577888 887654
No 13
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.94 E-value=3.3e-28 Score=239.04 Aligned_cols=164 Identities=41% Similarity=0.589 Sum_probs=145.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~ 494 (591)
|++++||||+||||||+++|||.++...+.+|.++++|+||+|+++||+++++.+++|++......++...+.++++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 78999999999999999999999888778899999999999999999999999999999887777789888888998888
Q ss_pred hcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 495 ~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
..++|++++||+|+.+....++..|.++....+|+.++||..++.+.+...+...|.+.+ .++++|+||+
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----------~~~~lIlTKl 150 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----------GIDGLILTKL 150 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----------STCEEEEEST
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----------cCceEEEEee
Confidence 888999999999999999999999999999889999999999999998888776665443 7899999999
Q ss_pred cccCCcEEE-EEeccc
Q 007747 575 DTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 575 D~i~d~vGa-ls~~~~ 589 (591)
|+. .+.|. |+++++
T Consensus 151 Det-~~~G~~l~~~~~ 165 (196)
T PF00448_consen 151 DET-ARLGALLSLAYE 165 (196)
T ss_dssp TSS-STTHHHHHHHHH
T ss_pred cCC-CCcccceeHHHH
Confidence 995 66777 877654
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.9e-27 Score=247.19 Aligned_cols=177 Identities=20% Similarity=0.245 Sum_probs=153.0
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhc-
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l- 469 (591)
...+|++|||++++|+ +++|+|||||||||||++|+|++.|++|+|.+.|.|.. ++||++|...++..+
T Consensus 17 ~~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 4679999999999999 99999999999999999999999999999999998874 499999998887777
Q ss_pred ---ccceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 470 ---QVPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 470 ---~v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
++.++...++.. ....+.++++.+++... +..+..+|+||+||+.||.+|. .+|+++|| ||||+|||
T Consensus 95 ~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~-----~~P~lliL-DEPt~GLD 168 (293)
T COG1131 95 VRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL-----HDPELLIL-DEPTSGLD 168 (293)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh-----cCCCEEEE-CCCCcCCC
Confidence 344555555543 23567778887777653 5668889999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCC-CCccceEEEeccccccCCcEEEE
Q 007747 543 AVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~D~i~d~vGal 584 (591)
+..+ ..|.+.|+.++..+ .++.+++|++..++.+||+++.|
T Consensus 169 p~~~-~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il 210 (293)
T COG1131 169 PESR-REIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL 210 (293)
T ss_pred HHHH-HHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE
Confidence 9997 55669999999988 68999999999999999988764
No 15
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.1e-27 Score=238.58 Aligned_cols=175 Identities=23% Similarity=0.277 Sum_probs=145.1
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------ceeeeecchhhhhhhc-----
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLRTHARRL----- 469 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------~RigaveQl~~~~~~l----- 469 (591)
.+|++|+|++.+|+ +++||||||||||||++.|+|+++|..|+|.+.+..+ -|+|||+|...+-..+
T Consensus 18 ~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~ 95 (254)
T COG1121 18 PVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVK 95 (254)
T ss_pred eeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHH
Confidence 59999999999999 9999999999999999999999999999999998865 4799999965322111
Q ss_pred ---ccc------eeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 470 ---QVP------IFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 470 ---~v~------l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
... ++. .+.+.+.+.+.+|++.+++.++ +..+-.+||||+||+.|||||+ .+|+++|| ||||+
T Consensus 96 d~V~~g~~~~~g~~~-~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~-----~~p~lllL-DEP~~ 168 (254)
T COG1121 96 DVVLLGRYGKKGWFR-RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA-----QNPDLLLL-DEPFT 168 (254)
T ss_pred HHHHccCcccccccc-cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc-----cCCCEEEe-cCCcc
Confidence 111 111 1233446778899999988877 7888999999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQWS 585 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGals 585 (591)
|+|+..+.. |-+.|..+.++++++.+..|-+..+-..+|++-.|+
T Consensus 169 gvD~~~~~~-i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 169 GVDVAGQKE-IYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred cCCHHHHHH-HHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc
Confidence 999999855 558999999888888888888888777777776543
No 16
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=3.1e-27 Score=231.06 Aligned_cols=165 Identities=24% Similarity=0.250 Sum_probs=131.6
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhh
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH 465 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~ 465 (591)
.+....+|++|++++.+|+ +++||||+||||||+|+||.++..+++|+|.+.|.++. ++|.|+|...+
T Consensus 11 ~fg~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL 88 (240)
T COG1126 11 SFGDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL 88 (240)
T ss_pred EeCCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence 3456789999999999999 99999999999999999999999999999999997552 49999997755
Q ss_pred hhhcc----c---ceeecCCCC-CHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 466 ARRLQ----V---PIFEKGYEK-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 466 ~~~l~----v---~l~~~~~~~-d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
..++. + |....+..+ ++.+.+.+.++.+++.+ .+.++..+|||||||++|||||+ .+|+++|| ||
T Consensus 89 FPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa-----M~P~vmLF-DE 162 (240)
T COG1126 89 FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA-----MDPKVMLF-DE 162 (240)
T ss_pred cccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc-----CCCCEEee-cC
Confidence 44442 2 222222222 23355566666666544 37999999999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
||++|||.-..+.+ +.+.+++.+ ++|.+++|.
T Consensus 163 PTSALDPElv~EVL-~vm~~LA~e----GmTMivVTH 194 (240)
T COG1126 163 PTSALDPELVGEVL-DVMKDLAEE----GMTMIIVTH 194 (240)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHc----CCeEEEEec
Confidence 99999998875554 788888887 566666664
No 17
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.9e-27 Score=227.83 Aligned_cols=177 Identities=20% Similarity=0.274 Sum_probs=147.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL-- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l-- 469 (591)
+.+++|++|++..|+ |++|+|||||||||+|++|+.++.|+.|+|.++++|+- ++|.++--..++.+|
T Consensus 15 v~AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 458999999999999 99999999999999999999999999999999999983 367666444444444
Q ss_pred --ccceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 --QVPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 --~v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
++.+|...++.. ......+..+.+++..+ |.....+|.||+|++.+||||. ++|++++| ||||+|||.
T Consensus 93 rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlv-----h~P~i~vl-DEP~sGLDi 166 (245)
T COG4555 93 RENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV-----HDPSILVL-DEPTSGLDI 166 (245)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHh-----cCCCeEEE-cCCCCCccH
Confidence 455555544432 23444555666666665 7888999999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQWS 585 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGals 585 (591)
... ..|++.+.++...++.+..++|++..+..+||++..|.
T Consensus 167 ~~~-r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh 207 (245)
T COG4555 167 RTR-RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLH 207 (245)
T ss_pred HHH-HHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEe
Confidence 885 78889999999999999999999999999999987653
No 18
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.94 E-value=1.3e-26 Score=234.92 Aligned_cols=176 Identities=21% Similarity=0.184 Sum_probs=138.1
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhh
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHAR 467 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~ 467 (591)
+....+|+++||++++|+ +++|+|||||||||||++|+|+++|..|+|.+.|.++. ++|+++|......
T Consensus 12 y~~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 12 YGGKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred ECCeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 446789999999999999 99999999999999999999999999999999999984 5999999875443
Q ss_pred hccc------------ceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 468 RLQV------------PIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 468 ~l~v------------~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
.+.| .++. ..+..+..++.++++.++...+ ++.+-++|||++|++.+||+|+ .+|+++||
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa-----Q~~~iLLL- 162 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFG-RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA-----QETPILLL- 162 (258)
T ss_pred CcEEeehHhhcCCccccccc-CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh-----cCCCEEEe-
Confidence 3321 1222 2233445578888888887776 6778888999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vG 582 (591)
||||+.||...|.+.+ +.++++..+ +.++.+..|-++-.=..||++.
T Consensus 163 DEPTs~LDi~~Q~evl-~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i 210 (258)
T COG1120 163 DEPTSHLDIAHQIEVL-ELLRDLNREKGLTVVMVLHDLNLAARYADHLI 210 (258)
T ss_pred CCCccccCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999998777 788888743 3444444444443334455443
No 19
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.93 E-value=9.5e-26 Score=256.64 Aligned_cols=222 Identities=26% Similarity=0.334 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCc
Q 007747 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (591)
Q Consensus 336 ~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~Gep 415 (591)
+|..+++++.|++.||+++++++|++.+.+.. . ...+...+.+.|.+.+. ++.++++.+..|+
T Consensus 124 ~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~---------~-~~~~~~~l~~~L~~~l~------il~~~~~~~~~g~- 186 (767)
T PRK14723 124 DPLRASLFRWLLGAGFSGQLARALLERLPVGY---------D-RPAAMAWIRNELATHLP------VLRDEDALLAQGG- 186 (767)
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC---------C-HHHHHHHHHHHHHHHhh------hccCCCcccCCCe-
Confidence 57778899999999999999999999986521 1 12356667777777653 3445566565666
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcC-C-cEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~-~-G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~ 493 (591)
+++||||||||||||++|||+++... + .+|.++++|+||+|+++|++.+++.++++++... ++.. +.++++.+
T Consensus 187 -Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~~~ 261 (767)
T PRK14723 187 -VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALAAL 261 (767)
T ss_pred -EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHHHh
Confidence 99999999999999999999988654 3 3899999999999999999999999999986432 4444 45666543
Q ss_pred hhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 494 ~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
.++|+++|||+|+++.+..++.++.++.....|..++||..++++.+.. ++++..+... ....++++|+||
T Consensus 262 --~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l------~~i~~~f~~~-~~~~i~glIlTK 332 (767)
T PRK14723 262 --GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL------NEVVHAYRHG-AGEDVDGCIITK 332 (767)
T ss_pred --cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH------HHHHHHHhhc-ccCCCCEEEEec
Confidence 4679999999999999999999999988888999999999998765433 3334333321 123689999999
Q ss_pred ccccCCcEEE-EEeccc
Q 007747 574 FDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 574 ~D~i~d~vGa-ls~~~~ 589 (591)
+|+. .++|. |++++.
T Consensus 333 LDEt-~~~G~iL~i~~~ 348 (767)
T PRK14723 333 LDEA-THLGPALDTVIR 348 (767)
T ss_pred cCCC-CCccHHHHHHHH
Confidence 9996 67888 887654
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.9e-26 Score=226.18 Aligned_cols=162 Identities=24% Similarity=0.277 Sum_probs=130.6
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----ceeeeecchh------hhhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLR------THARR 468 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----~RigaveQl~------~~~~~ 468 (591)
...+|++|+|++.+|+ +++||||+||||||||+.|||+..|+.|+|.+.|... -++|+|+|.. +..+|
T Consensus 15 ~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~N 92 (248)
T COG1116 15 GVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDN 92 (248)
T ss_pred ceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhh
Confidence 3679999999999999 9999999999999999999999999999999999765 3589999965 34555
Q ss_pred cccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 469 LQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 469 l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
..+++...+..+ +....+.++++.+++.++ +.++..+||||+||++|||+|+ .+|+++|| |||++.||+..+
T Consensus 93 V~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~-----~~P~lLLl-DEPFgALDalTR 166 (248)
T COG1116 93 VALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALA-----TRPKLLLL-DEPFGALDALTR 166 (248)
T ss_pred heehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHh-----cCCCEEEE-cCCcchhhHHHH
Confidence 555554433222 234578888888888887 7999999999999999999999 99999999 999999999997
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEec
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
.. +++.|.++.... ..|.+++|
T Consensus 167 ~~-lq~~l~~lw~~~---~~TvllVT 188 (248)
T COG1116 167 EE-LQDELLRLWEET---RKTVLLVT 188 (248)
T ss_pred HH-HHHHHHHHHHhh---CCEEEEEe
Confidence 54 445555554332 34445554
No 21
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.93 E-value=3e-25 Score=235.62 Aligned_cols=222 Identities=21% Similarity=0.313 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCce
Q 007747 337 PALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 416 (591)
Q Consensus 337 ~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~Gep~ 416 (591)
..+..+...|++.+|.++++.+|++.+..........+ ...+...+.+.+..++.... . + ...|+
T Consensus 178 ~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~-------~-~---~~~~~ 242 (436)
T PRK11889 178 FIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMIT----EEEVIEYILEDMRSHFNTEN-------V-F---EKEVQ 242 (436)
T ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCC----HHHHHHHHHHHHHHHhcccc-------c-c---ccCCc
Confidence 34556889999999999999999999876543322211 23455556666666554211 0 1 22356
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhh-
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR- 495 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~- 495 (591)
+++|+|||||||||++++||+.+...+.+|.++.+|+||+|+++|++.+++.++++++.. .++... .+++..+..
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~---~d~~~L-~~aL~~lk~~ 318 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAM-TRALTYFKEE 318 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEec---CCHHHH-HHHHHHHHhc
Confidence 999999999999999999999888777899999999999999999999999999998753 244444 356666543
Q ss_pred cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC-CCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 496 ~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G-lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
.++|+++|||+|+.+++..+++.|.+++....|+.++||..++++ .|...+...|+ ...++++|+||+
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~-----------~~~idglI~TKL 387 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK-----------DIHIDGIVFTKF 387 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc-----------CCCCCEEEEEcc
Confidence 368999999999999999999999999988899988888887655 45555554442 358999999999
Q ss_pred cccCCcEEE-EEeccc
Q 007747 575 DTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 575 D~i~d~vGa-ls~~~~ 589 (591)
|+. +++|. |++++.
T Consensus 388 DET-~k~G~iLni~~~ 402 (436)
T PRK11889 388 DET-ASSGELLKIPAV 402 (436)
T ss_pred cCC-CCccHHHHHHHH
Confidence 996 57888 888754
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.93 E-value=9.7e-26 Score=235.70 Aligned_cols=177 Identities=18% Similarity=0.239 Sum_probs=143.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ 470 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~ 470 (591)
...+|++|||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.|+. ++|+++|...+...+.
T Consensus 19 ~~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 19 DKLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred CeEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 3569999999999999 99999999999999999999999999999999998862 5999999865544432
Q ss_pred ----cceeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 471 ----VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 471 ----v~l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
+.++...++... ...+.++++.+++.. .+..+..+||||+|++.||++|+ .+|+++|| ||||+|||
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~-----~~P~lllL-DEPt~gLD 170 (306)
T PRK13537 97 VRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV-----NDPDVLVL-DEPTTGLD 170 (306)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh-----CCCCEEEE-eCCCcCCC
Confidence 222222333222 234456666666544 36778899999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+..+. .+.+.|.++...+.++.+++|.+..++.+||++..+
T Consensus 171 ~~~~~-~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il 211 (306)
T PRK13537 171 PQARH-LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVI 211 (306)
T ss_pred HHHHH-HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99975 456888888776778888888889999999988765
No 23
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=6.3e-26 Score=224.93 Aligned_cols=179 Identities=22% Similarity=0.284 Sum_probs=140.9
Q ss_pred HHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------------ceeeee
Q 007747 392 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAV 459 (591)
Q Consensus 392 ~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------------~Rigav 459 (591)
.+........|+++++|.+.+|+ +++|+||+|+||||+|+.|.|+++|+.|+|.|.|.|+ .|+|.+
T Consensus 13 ~v~~~fG~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~Gvl 90 (263)
T COG1127 13 GVTKSFGDRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVL 90 (263)
T ss_pred eeeeecCCEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEE
Confidence 33445566789999999999999 9999999999999999999999999999999999987 259999
Q ss_pred cchh------hhhhhcccceeecCCCCCHH----HHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCC
Q 007747 460 EQLR------THARRLQVPIFEKGYEKDPA----IVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (591)
Q Consensus 460 eQl~------~~~~~l~v~l~~~~~~~d~~----~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~ 527 (591)
+|.. +..+|..+|+++. ..-+. +.+..-++.+++.+ .+..+-++||||++|++|||||+ .+
T Consensus 91 FQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia-----ld 163 (263)
T COG1127 91 FQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA-----LD 163 (263)
T ss_pred eeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh-----cC
Confidence 9965 3455556666543 22222 23333344444443 36889999999999999999999 99
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEEE
Q 007747 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQW 584 (591)
Q Consensus 528 PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGal 584 (591)
|+++++ ||||+||||+.. ..|.+.++++.+. .+.|.+++|. +-.+||++..|
T Consensus 164 Pell~~-DEPtsGLDPI~a-~~~~~LI~~L~~~---lg~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 164 PELLFL-DEPTSGLDPISA-GVIDELIRELNDA---LGLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred CCEEEe-cCCCCCCCcchH-HHHHHHHHHHHHh---hCCEEEEEECChHHHHhhhceEEEE
Confidence 999999 999999999985 6788888888765 5667666664 55667776653
No 24
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.92 E-value=2.5e-25 Score=235.87 Aligned_cols=178 Identities=18% Similarity=0.235 Sum_probs=142.7
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc--------ceeeeecchhhhhhhc
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARRL 469 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt--------~RigaveQl~~~~~~l 469 (591)
....+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++ .++|+++|...+...+
T Consensus 52 ~~~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 52 GDKAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred CCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 34569999999999999 9999999999999999999999999999999999875 2499999976554333
Q ss_pred c----cceeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 470 Q----VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 470 ~----v~l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
. +.++...++... ...+.++++.+++.. .+..+.++||||+|++.||++|+ .+|+++|| ||||+||
T Consensus 130 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~-----~~P~lLiL-DEPt~gL 203 (340)
T PRK13536 130 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI-----NDPQLLIL-DEPTTGL 203 (340)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCCCC
Confidence 2 222222233222 233445666665544 36778899999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+..+. .|.+.|..+...+.++.+++|.+..++.+||++..|
T Consensus 204 D~~~r~-~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il 245 (340)
T PRK13536 204 DPHARH-LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 245 (340)
T ss_pred CHHHHH-HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 999974 566888888776778888889999999999998765
No 25
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=9.7e-26 Score=223.59 Aligned_cols=178 Identities=13% Similarity=0.183 Sum_probs=150.2
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----ceeeeecchhhhhhhccc
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQV 471 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----~RigaveQl~~~~~~l~v 471 (591)
.....++++|+|.+++|+ +++|+||||||||||+++|.|++.|+.|+|.+.|.+. -||||.+..|-++..+.+
T Consensus 12 Fg~k~av~~isf~v~~G~--i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 12 FGDKKAVDNISFEVPPGE--IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred cCceeeecceeeeecCCe--EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcH
Confidence 345678999999999999 9999999999999999999999999999999999776 379999999988887744
Q ss_pred ----ceeecCCCCCHHHHHHH---HHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 472 ----PIFEKGYEKDPAIVAKE---AIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 472 ----~l~~~~~~~d~~~~a~~---al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
.++....+...+++..+ .++.++..++ ...+-++|-|++|++.+..++. ++|+++|| |||++||||
T Consensus 90 ~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi-----HePeLlIL-DEPFSGLDP 163 (300)
T COG4152 90 EDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI-----HEPELLIL-DEPFSGLDP 163 (300)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh-----cCCCEEEe-cCCccCCCh
Confidence 34444445554444443 4455554444 3667789999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+++ +.+.+.+.+++..+.++..+.|.++.++++||++-.
T Consensus 164 VN~-elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llm 202 (300)
T COG4152 164 VNV-ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLM 202 (300)
T ss_pred hhH-HHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhe
Confidence 996 677889999999999999999999999999998543
No 26
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=8.1e-25 Score=217.99 Aligned_cols=168 Identities=22% Similarity=0.225 Sum_probs=130.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------c---eeeeecchhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------F---RSGAVEQLRTHA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~---RigaveQl~~~~ 466 (591)
+.+|++++|++++|+ +++|+||+||||||||++|+++..|++|.|.+.|.|+ | ++|+|+|...+.
T Consensus 18 ~~~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 679999999999999 9999999999999999999999999999999999877 2 399999977554
Q ss_pred h------hcccceeecCCCC-CHHHHHHHHHHHhhhcC-CC-cchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 467 R------RLQVPIFEKGYEK-DPAIVAKEAIQEATRNG-SD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 467 ~------~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~-~d-~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
. ++.+|+...+... .....+...++.+++.+ .. ..+..+|||++||+++||||+ ++|++||. |||
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~-----~~P~iilA-DEP 169 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI-----NNPKIILA-DEP 169 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh-----cCCCeEEe-eCc
Confidence 4 4445543332222 22344455555555542 23 678899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCC
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDD 579 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d 579 (591)
|..||.......+ +.|..+..+ .+.+.+++|.=..++.
T Consensus 170 TgnLD~~t~~~V~-~ll~~~~~~---~g~tii~VTHd~~lA~ 207 (226)
T COG1136 170 TGNLDSKTAKEVL-ELLRELNKE---RGKTIIMVTHDPELAK 207 (226)
T ss_pred cccCChHHHHHHH-HHHHHHHHh---cCCEEEEEcCCHHHHH
Confidence 9999998875444 666666543 4667788887555443
No 27
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=1.6e-24 Score=208.16 Aligned_cols=175 Identities=18% Similarity=0.151 Sum_probs=144.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------------ceeeeecchh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLR---- 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------------~RigaveQl~---- 463 (591)
..+|++|||.+++|+ ++.|+||+||||||+|+.|++..+|+.|+|.+.++|+ .+||.|+|..
T Consensus 15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 669999999999999 9999999999999999999999999999999999997 2599999965
Q ss_pred --hhhhhcccceeecCCCCCH-HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 464 --THARRLQVPIFEKGYEKDP-AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 464 --~~~~~l~v~l~~~~~~~d~-~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
+.+++..+|+...++.... ...+.++++..++.+. ...+..+|||+|||++||||+. ++|+++|. ||||-
T Consensus 93 ~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-----~~P~vLlA-DEPTG 166 (223)
T COG2884 93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-----NQPAVLLA-DEPTG 166 (223)
T ss_pred cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-----cCCCeEee-cCCCC
Confidence 4567766776655554433 3566777877776554 6788999999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+||+....+.+ +.+.++...+.++.+..|-..-++.+..++-+
T Consensus 167 NLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~ 209 (223)
T COG2884 167 NLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMRHRVLA 209 (223)
T ss_pred CCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhccCcEEE
Confidence 99998876665 77888887777777766666666665544433
No 28
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.92 E-value=1.7e-24 Score=232.33 Aligned_cols=235 Identities=22% Similarity=0.277 Sum_probs=178.5
Q ss_pred CccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccc
Q 007747 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDV 406 (591)
Q Consensus 327 ~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i 406 (591)
..+++++++.+.++.+++.|++.||+++++++|++.+...+.+.....+ ..+...+.+.|...+.... +.+..
T Consensus 145 ~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~----~~~~~~l~~~L~~~l~~~~--~~~~~- 217 (432)
T PRK12724 145 ETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRN----HNVTERAVTYLEERVSVDS--DLFSG- 217 (432)
T ss_pred cccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccch----HHHHHHHHHHHHHhcccch--hhhhh-
Confidence 5678999999999999999999999999999999999887765444332 2355566666666664321 11111
Q ss_pred ccccccCCceEEEEEccCCCcHHHHHHHHHhhh-hcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHH
Q 007747 407 HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIV 485 (591)
Q Consensus 407 s~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l-~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~ 485 (591)
....++.+++|+||+||||||++.+||..+ ...+.+|.+.++|+||+++++|++.+++.++++++... .
T Consensus 218 ---~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~-------~ 287 (432)
T PRK12724 218 ---TGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK-------D 287 (432)
T ss_pred ---cccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH-------H
Confidence 001234599999999999999999999754 45577999999999999999999999999999875421 1
Q ss_pred HHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcC---CCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007747 486 AKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLN---NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (591)
Q Consensus 486 a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~---~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (591)
+.++.+.+...++|++++||+|+++++...+.+|.++.... .|..++||..++.+.+...+.. .. +.
T Consensus 288 ~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~------~~----f~ 357 (432)
T PRK12724 288 IKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL------KA----YE 357 (432)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH------HH----hc
Confidence 23344444446789999999999998889999999888764 3557788899999985544322 11 23
Q ss_pred CccceEEEeccccccCCcEEE-EEeccc
Q 007747 563 PQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 563 ~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
.++++++|+||+|+. .++|. |+++++
T Consensus 358 ~~~~~glIlTKLDEt-~~~G~il~i~~~ 384 (432)
T PRK12724 358 SLNYRRILLTKLDEA-DFLGSFLELADT 384 (432)
T ss_pred CCCCCEEEEEcccCC-CCccHHHHHHHH
Confidence 568999999999995 77888 888764
No 29
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.92 E-value=8.1e-25 Score=228.10 Aligned_cols=176 Identities=18% Similarity=0.221 Sum_probs=138.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~- 470 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+...+.
T Consensus 6 ~~~l~~vs~~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGE--VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 468999999999999 99999999999999999999999999999999997752 4899999765443332
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 471 ---v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+.++...++... ...+.++++.+++... +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~gLD~ 157 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLI-----HQPDVLFL-DEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCH
Confidence 122111222221 2345566776665443 6778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+. .+.+.|..+...+.++.+++|.+.-+..+||++..+
T Consensus 158 ~~~~-~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l 197 (302)
T TIGR01188 158 RTRR-AIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAII 197 (302)
T ss_pred HHHH-HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 9974 555888888766667777777777788888887664
No 30
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.91 E-value=2.6e-24 Score=227.95 Aligned_cols=221 Identities=25% Similarity=0.342 Sum_probs=170.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCceEEE
Q 007747 340 KALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVV 419 (591)
Q Consensus 340 ~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~Gep~ii~ 419 (591)
.++++.|.+.||.++++..|++.+...+....... ...+...+.+.|.+.+.... ++.+.+++ +++
T Consensus 145 ~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~----~~~v~~~~~~~L~~~l~~~~--------~~~~~~~~--ii~ 210 (407)
T PRK12726 145 SDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAH----LDDITDWFVPYLSGKLAVED--------SFDLSNHR--IIS 210 (407)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc----HHHHHHHHHHHhcCcEeeCC--------CceecCCe--EEE
Confidence 38899999999999999999999977644332222 23455666666666654321 22334555 999
Q ss_pred EEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhh-hcCC
Q 007747 420 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT-RNGS 498 (591)
Q Consensus 420 LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~-~~~~ 498 (591)
|+||+||||||++++||.++...+.+|.++++|+||+|+++|++.+++.+++|++.. .++... .+++..+. ..++
T Consensus 211 lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL-~~al~~l~~~~~~ 286 (407)
T PRK12726 211 LIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCV 286 (407)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH-HHHHHHHHhcCCC
Confidence 999999999999999999887778899999999999999999999999999998743 345443 55666654 3568
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccC
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~ 578 (591)
|++++||+|+.+.+..++..|.++....+|++++||..|+ ....+.. +++.. +....++++|+||+|+.
T Consensus 287 D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~----~i~~~----f~~l~i~glI~TKLDET- 355 (407)
T PRK12726 287 DHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVM----TILPK----LAEIPIDGFIITKMDET- 355 (407)
T ss_pred CEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHH----HHHHh----cCcCCCCEEEEEcccCC-
Confidence 9999999999999999999999999989999988888764 3333322 22222 34568999999999995
Q ss_pred CcEEE-EEeccc
Q 007747 579 DKHYQ-WSMCRE 589 (591)
Q Consensus 579 d~vGa-ls~~~~ 589 (591)
.++|+ ||++++
T Consensus 356 ~~~G~~Lsv~~~ 367 (407)
T PRK12726 356 TRIGDLYTVMQE 367 (407)
T ss_pred CCccHHHHHHHH
Confidence 77888 988765
No 31
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.91 E-value=5.7e-25 Score=230.77 Aligned_cols=171 Identities=22% Similarity=0.204 Sum_probs=135.6
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhh------
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARR------ 468 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~------ 468 (591)
+|+++++++..|+ +++|+|||||||||||++|||+..|++|+|.|.|.|+ .++|+|+|...++.+
T Consensus 18 ~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 8999999999999 9999999999999999999999999999999999997 359999997755444
Q ss_pred cccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 469 LQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 469 l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+.+++...+..+ +....+.++.+.+++.++ +..+..+|||++||++++|||. .+|+++|| |||++.||+.-+
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV-----r~P~v~L~-DEPlSnLDa~lR 169 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALV-----RKPKVFLL-DEPLSNLDAKLR 169 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHh-----cCCCEEEe-cCchhHhhHHHH
Confidence 444544333222 234566777777777665 7889999999999999999999 99999999 999999999876
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEEE
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQW 584 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGal 584 (591)
. .+...++.+.++ .++|.|++|+ ..+++|++..+
T Consensus 170 ~-~mr~ei~~lh~~---l~~T~IYVTHDq~EAmtladri~Vm 207 (338)
T COG3839 170 V-LMRSEIKKLHER---LGTTTIYVTHDQVEAMTLADRIVVM 207 (338)
T ss_pred H-HHHHHHHHHHHh---cCCcEEEEcCCHHHHHhhCCEEEEE
Confidence 4 344555555433 4566677764 56677776654
No 32
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.91 E-value=2.1e-24 Score=236.32 Aligned_cols=238 Identities=21% Similarity=0.293 Sum_probs=167.0
Q ss_pred cchHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Q 007747 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (591)
Q Consensus 314 ~g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~i 393 (591)
.+.|...+.++... ......|.+.++++.|++.||+.+++++|++.+...... ..+...+.+.|.+.
T Consensus 176 r~~l~~~~~~l~~~---~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~----------~~~~~~l~~~l~~~ 242 (484)
T PRK06995 176 RGMLEEQLASLAWG---ERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDA----------EAALDWVQSALAKN 242 (484)
T ss_pred HHHHHHHHHHHhcc---ccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhch----------hHHHHHHHHHHHHH
Confidence 44555555555421 223346888999999999999999999999999765321 12334445555554
Q ss_pred cCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCC-c-EEEEcccccceeeeecchhhhhhhccc
Q 007747 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-V-SVMMAACDTFRSGAVEQLRTHARRLQV 471 (591)
Q Consensus 394 l~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~-G-~V~i~~~Dt~RigaveQl~~~~~~l~v 471 (591)
+. ++.+.++.+..|. +++||||||||||||+++||+++.... + +|.++.+|+||+|+++|++.|++.+++
T Consensus 243 l~------~~~~~~~~~~~g~--Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 243 LP------VLDSEDALLDRGG--VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred Hh------hccCccccccCCc--EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 43 2333444455566 999999999999999999999886553 3 899999999999999999999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
+++......+. ......+.+++.+++||+|+.+++..++.++..+.....|...+||..++.+.+...+
T Consensus 315 pv~~~~~~~Dl------~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~----- 383 (484)
T PRK06995 315 PVHAVKDAADL------RLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE----- 383 (484)
T ss_pred CeeccCCchhH------HHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH-----
Confidence 87653322221 2234456678999999999998877666666655444446656665666665543332
Q ss_pred HHHHHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
++..+ +...++++|+||+|+. .++|. |+++++
T Consensus 384 -i~~~f----~~~~~~g~IlTKlDet-~~~G~~l~i~~~ 416 (484)
T PRK06995 384 -VVQAY----RGPGLAGCILTKLDEA-ASLGGALDVVIR 416 (484)
T ss_pred -HHHHh----ccCCCCEEEEeCCCCc-ccchHHHHHHHH
Confidence 22222 3358999999999996 57777 887764
No 33
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=2.7e-25 Score=234.38 Aligned_cols=165 Identities=21% Similarity=0.215 Sum_probs=134.2
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhc
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL 469 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l 469 (591)
+....+++|+|+.+.+|+ +++|+||+||||||+|++|||+..|++|+|.|.|.|+. .+|+|+|...+..+|
T Consensus 15 yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 15 FGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred cCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCC
Confidence 446789999999999999 99999999999999999999999999999999999984 499999977554444
Q ss_pred ------ccceeecCCCC--CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 470 ------QVPIFEKGYEK--DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 470 ------~v~l~~~~~~~--d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
..++....... +....+.++++.+++.++ +..+..+||||+||++|||||+ .+|+++|| |||+++
T Consensus 93 tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~-----~~P~vLLL-DEPlSa 166 (352)
T COG3842 93 TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV-----PEPKVLLL-DEPLSA 166 (352)
T ss_pred cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh-----cCcchhhh-cCcccc
Confidence 33333111112 123577788888888777 7899999999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
||..-+ ..+...++.+.. ..++|.|++|+
T Consensus 167 LD~kLR-~~mr~Elk~lq~---~~giT~i~VTH 195 (352)
T COG3842 167 LDAKLR-EQMRKELKELQR---ELGITFVYVTH 195 (352)
T ss_pred hhHHHH-HHHHHHHHHHHH---hcCCeEEEEEC
Confidence 999776 344455555544 35899999986
No 34
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=2.7e-24 Score=211.26 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=133.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------ceeeeecchhhh-hhhc---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLRTH-ARRL--- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------~RigaveQl~~~-~~~l--- 469 (591)
..+|++++|++.+|+ +++|+|||||||||||+.|+|++.|+.|+|.+.+.++ .++|+++|.... ...+
T Consensus 13 ~~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGE--IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 468999999999999 9999999999999999999999999999999999875 258999997521 1111
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 470 -QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 470 -~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
++.+....+. .....+.++++.+++..+ +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+
T Consensus 91 e~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~LD~~~~- 162 (205)
T cd03226 91 EELLLGLKELD-AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALL-----SGKDLLIF-DEPTSGLDYKNM- 162 (205)
T ss_pred HHHhhhhhhcC-ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCCccCCHHHH-
Confidence 1111111112 222345667777666543 6777899999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+.+.|..+...+.++.+.+|-+.-+..++|++..+
T Consensus 163 ~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 199 (205)
T cd03226 163 ERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLL 199 (205)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4566788888655555666666666666777876554
No 35
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.91 E-value=5.5e-24 Score=228.33 Aligned_cols=224 Identities=21% Similarity=0.275 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCc
Q 007747 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (591)
Q Consensus 336 ~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~Gep 415 (591)
.+.++++++.|++.||+++++++|++.+.+.+....... ...+++.+.+.|.+.+..... + .....|
T Consensus 108 ~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~----~~~v~~~l~~~l~~~i~~~~~------~---~~~~~~ 174 (388)
T PRK12723 108 HPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDD----YDKVRDSVIIYIAKTIKCSGS------I---IDNLKK 174 (388)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCC----HHHHHHHHHHHHHHHhhccCc------c---ccCCCC
Confidence 467899999999999999999999999987754433322 234555556656655532111 0 112346
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhc----CCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~----~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~ 491 (591)
.+++|+||||+||||++++||.++.. .+.+|.++++|+||+|+++|++++++.+++|+.... .... ...++.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~---~~~~-l~~~L~ 250 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE---SFKD-LKEEIT 250 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC---cHHH-HHHHHH
Confidence 69999999999999999999988763 367999999999999999999999999999986432 2222 233443
Q ss_pred HhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCc-EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEE
Q 007747 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD-LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (591)
Q Consensus 492 ~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd-lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (591)
. ..++|++++||+|+++.+...+..|.+++....|+ .++||..+|++..... +++..+ ...+++++|
T Consensus 251 ~--~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~------~~~~~~----~~~~~~~~I 318 (388)
T PRK12723 251 Q--SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK------EIFHQF----SPFSYKTVI 318 (388)
T ss_pred H--hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH------HHHHHh----cCCCCCEEE
Confidence 3 35789999999999998776677777777766544 6788899999854333 223322 345899999
Q ss_pred eccccccCCcEEE-EEeccc
Q 007747 571 LTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 571 lTK~D~i~d~vGa-ls~~~~ 589 (591)
+||+|+. .++|. |+++++
T Consensus 319 ~TKlDet-~~~G~~l~~~~~ 337 (388)
T PRK12723 319 FTKLDET-TCVGNLISLIYE 337 (388)
T ss_pred EEeccCC-CcchHHHHHHHH
Confidence 9999995 67887 887754
No 36
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.6e-24 Score=219.97 Aligned_cols=173 Identities=23% Similarity=0.242 Sum_probs=140.8
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------------ceeeeecchh---
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLR--- 463 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------------~RigaveQl~--- 463 (591)
.+.+|++||+++++|+ +++|||.+|||||||+++|.++-.|++|+|.++|.|+ .+||+++|..
T Consensus 18 ~~~al~~vsL~I~~Ge--I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGE--IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCc--EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4679999999999999 9999999999999999999999999999999999887 2499999964
Q ss_pred ---hhhhhcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 464 ---THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 464 ---~~~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
+..+++.+|+...+..+ +...++.+.++.+++.+. +.++..+|||++||+.|||||+ ++|+++|. ||||
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa-----~~P~iLL~-DEaT 169 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA-----NNPKILLC-DEAT 169 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh-----cCCCEEEe-cCcc
Confidence 56677777776555432 233556667777776554 7999999999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQ 583 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGa 583 (591)
++|||......+ +.|+++.+ ..++|.+++|. +-.+|+++..
T Consensus 170 SALDP~TT~sIL-~LL~~In~---~lglTIvlITHEm~Vvk~ic~rVav 214 (339)
T COG1135 170 SALDPETTQSIL-ELLKDINR---ELGLTIVLITHEMEVVKRICDRVAV 214 (339)
T ss_pred ccCChHHHHHHH-HHHHHHHH---HcCCEEEEEechHHHHHHHhhhheE
Confidence 999998865333 56666654 57899988886 3345666544
No 37
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.91 E-value=4.8e-24 Score=210.96 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=130.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~~ 467 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++++++|...+..
T Consensus 16 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 358999999999999 99999999999999999999999999999999987641 3899999754333
Q ss_pred hc------ccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 468 RL------QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 468 ~l------~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
.+ .......+... .....+.++++.+++... +..+..+||||+||+.|+++|+ .+|+++|| ||||+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll-DEPt~ 167 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIV-----HKPPLLLA-DEPTG 167 (216)
T ss_pred cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCC
Confidence 22 21111111111 122345566666655443 5677899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|||+..+. .+.+.|..+...+.++.+.+|-..-+..++|++..
T Consensus 168 ~LD~~~~~-~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~ 210 (216)
T TIGR00960 168 NLDPELSR-DIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLT 210 (216)
T ss_pred cCCHHHHH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999874 45577877765545555555555555566676644
No 38
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=3.3e-24 Score=211.68 Aligned_cols=176 Identities=24% Similarity=0.242 Sum_probs=131.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----ceeeeecchhhh--------hh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTH--------AR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----~RigaveQl~~~--------~~ 467 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.+. .++++++|...+ .+
T Consensus 12 ~~~l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e 89 (213)
T cd03235 12 HPVLEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRD 89 (213)
T ss_pred EEeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHH
Confidence 458999999999999 9999999999999999999999999999999998764 348999996532 22
Q ss_pred hcccceeecC--C---CCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 468 RLQVPIFEKG--Y---EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 468 ~l~v~l~~~~--~---~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
++........ + .......+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~llll-DEPt~~L 163 (213)
T cd03235 90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV-----QDPDLLLL-DEPFAGV 163 (213)
T ss_pred HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccC
Confidence 2222111100 0 0112234455666655433 25677899999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+..+. .+.+.|.++...+.++.+.+|-+.-+..++|++..+
T Consensus 164 D~~~~~-~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 205 (213)
T cd03235 164 DPKTQE-DIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205 (213)
T ss_pred CHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 999874 555788887655455555556656666667776553
No 39
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.90 E-value=4.8e-24 Score=222.43 Aligned_cols=176 Identities=18% Similarity=0.238 Sum_probs=134.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc--------ceeeeecchhhhhhhcc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt--------~RigaveQl~~~~~~l~- 470 (591)
..+|++++|++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.+. .++|+++|...+...+.
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 17 KVVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred eEEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 468999999999999 9999999999999999999999999999999998774 24899999754432221
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 471 ---v~l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+.++...++... ...+.++++.+.+.. .+..+..+||||+||+.||++|+ .+|+++|| ||||+|||+
T Consensus 95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~gLD~ 168 (303)
T TIGR01288 95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALI-----NDPQLLIL-DEPTTGLDP 168 (303)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCH
Confidence 111111122221 123445566655543 36778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+. .+.+.|.++...+.++.+.+|.+.-+..+||++..+
T Consensus 169 ~~~~-~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l 208 (303)
T TIGR01288 169 HARH-LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 208 (303)
T ss_pred HHHH-HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 9874 555888888766566666777777777778887654
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9.8e-24 Score=208.33 Aligned_cols=176 Identities=19% Similarity=0.169 Sum_probs=131.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhcc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l~-- 470 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 13 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 458999999999999 99999999999999999999999999999999987752 4899999764433221
Q ss_pred --cceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 471 --VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 471 --v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
+.+....++... ...+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~-----~~p~~lll-DEPt~~LD~~ 164 (213)
T cd03259 91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALA-----REPSLLLL-DEPLSALDAK 164 (213)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHH
Confidence 111111111111 2334556666555432 5777899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 545 DQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+. .+.+.|..+... +.++.+.+|-..-+..++|++..+
T Consensus 165 ~~~-~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 204 (213)
T cd03259 165 LRE-ELREELKELQRELGITTIYVTHDQEEALALADRIAVM 204 (213)
T ss_pred HHH-HHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEE
Confidence 874 455778777653 455555666666666777877554
No 41
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.90 E-value=5.6e-24 Score=221.78 Aligned_cols=176 Identities=16% Similarity=0.237 Sum_probs=139.5
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ 470 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~ 470 (591)
...+|++++|++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|.+.+...+.
T Consensus 14 ~~~~l~~is~~i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 14 TQNALDEVSFEAQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred CEEEEEEeEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 3568999999999999 99999999999999999999999999999999997752 4899999865544432
Q ss_pred ----cceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 471 ----VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 471 ----v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
+.++...++.. ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~lliL-DEPt~gLD 165 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALI-----HDPKVLIL-DEPTTGLD 165 (301)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCC
Confidence 22222222222 12345566666665543 6788899999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+..+. .+.+.|..+.. ..++.+++|.+..+..+||++..|
T Consensus 166 ~~~~~-~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l 205 (301)
T TIGR03522 166 PNQLV-EIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIII 205 (301)
T ss_pred HHHHH-HHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 99874 55578888865 466777778888888889988765
No 42
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=7.7e-24 Score=209.61 Aligned_cols=174 Identities=20% Similarity=0.141 Sum_probs=129.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~~~~ 466 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++++++|...+.
T Consensus 17 ~~il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 468999999999999 9999999999999999999999999999999988653 1389999875433
Q ss_pred hhcc----cceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 RRLQ----VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 ~~l~----v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
..+. +.+....++.. ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~lllL-DEP~ 168 (218)
T cd03255 95 PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA-----NDPKIILA-DEPT 168 (218)
T ss_pred CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHc-----cCCCEEEE-cCCc
Confidence 2221 11111111111 12344556666655433 5677899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhc-CCCCccceEEEeccccccCCcEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSS-SPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~-~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+|||+..+. .+.+.|.++.. .+.++.+.+|-+.-++ ++|++..
T Consensus 169 ~~LD~~~~~-~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 169 GNLDSETGK-EVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ccCCHHHHH-HHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEE
Confidence 999999874 55588888765 3455666666666666 6676654
No 43
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.90 E-value=8.4e-24 Score=208.76 Aligned_cols=176 Identities=20% Similarity=0.146 Sum_probs=131.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~~ 467 (591)
..+|+++||++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. ++++++|...+..
T Consensus 15 ~~il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 458999999999999 99999999999999999999999999999999887642 3789998764432
Q ss_pred hcc----cceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 468 RLQ----VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 468 ~l~----v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
.+. +.+.....+.. ....+.++++.+++... +..+.++||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~lllL-DEPt~ 166 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV-----NSPPLLLA-DEPTG 166 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----CCCCEEEE-eCCcc
Confidence 221 11111111111 12344556666555432 5677899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .+.+.|..+...+.++.+.+|-+.-+..++|++..+
T Consensus 167 ~LD~~~~~-~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 167 NLDPDLSE-RILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred cCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEe
Confidence 99999974 455788887655555666666666666677776543
No 44
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=9e-24 Score=206.29 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=126.3
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-----CcEEEEcccccc-----------eeeeec
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVE 460 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-----~G~V~i~~~Dt~-----------Rigave 460 (591)
+....+|++|++.+++++ |++|+||+||||||+|+++..+.... .|+|.+.|.|+| |+|.|+
T Consensus 17 Yg~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVF 94 (253)
T COG1117 17 YGDKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF 94 (253)
T ss_pred ECchhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeec
Confidence 345679999999999999 99999999999999999999876543 599999999985 599999
Q ss_pred chhh-----hhhhcccceeecCCC-CCHHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 461 QLRT-----HARRLQVPIFEKGYE-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 461 Ql~~-----~~~~l~v~l~~~~~~-~d~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
|-+. .++++-......+.. ....++++.+++.+.+.+ ++.....+|||+|||++|||+|+ .+|+
T Consensus 95 QkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA-----v~Pe 169 (253)
T COG1117 95 QKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA-----VKPE 169 (253)
T ss_pred cCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh-----cCCc
Confidence 9763 344432222111221 233466777777665432 34556789999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
++|| ||||++|||++.. +..+.+..++. ..|.+|+|.-
T Consensus 170 VlLm-DEPtSALDPIsT~-kIEeLi~eLk~-----~yTIviVTHn 207 (253)
T COG1117 170 VLLM-DEPTSALDPISTL-KIEELITELKK-----KYTIVIVTHN 207 (253)
T ss_pred EEEe-cCcccccCchhHH-HHHHHHHHHHh-----ccEEEEEeCC
Confidence 9999 9999999999974 56677777774 5677888863
No 45
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=4.1e-24 Score=213.28 Aligned_cols=166 Identities=19% Similarity=0.239 Sum_probs=127.4
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhhhc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~~l 469 (591)
...+++++||+++.|+ +++||||+||||||+|++|.+++.|+.|+|.|.|.|+ .+||||-|---+..++
T Consensus 13 ~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~ 90 (309)
T COG1125 13 NKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHL 90 (309)
T ss_pred CceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCc
Confidence 5678999999999999 9999999999999999999999999999999999998 3599999955333333
Q ss_pred -------ccceeecCCCCCHHHHHHHHHHHhhhcC--C-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 470 -------QVPIFEKGYEKDPAIVAKEAIQEATRNG--S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 470 -------~v~l~~~~~~~d~~~~a~~al~~~~~~~--~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
-||-...........++.+.++.+++.. | ++++.++|||+|||+.++|||+ .+|+++|| |||+.
T Consensus 91 Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA-----adP~ilLM-DEPFg 164 (309)
T COG1125 91 TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA-----ADPPILLM-DEPFG 164 (309)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh-----cCCCeEee-cCCcc
Confidence 2232222112223355666677666643 3 6899999999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc-ccc
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDT 576 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~D~ 576 (591)
+|||+.+. .+++.+..+... .+.|.|.+|. +|+
T Consensus 165 ALDpI~R~-~lQ~e~~~lq~~---l~kTivfVTHDidE 198 (309)
T COG1125 165 ALDPITRK-QLQEEIKELQKE---LGKTIVFVTHDIDE 198 (309)
T ss_pred ccChhhHH-HHHHHHHHHHHH---hCCEEEEEecCHHH
Confidence 99999974 454555555433 4556666653 444
No 46
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.90 E-value=6.4e-24 Score=225.27 Aligned_cols=159 Identities=35% Similarity=0.460 Sum_probs=127.7
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhh--cCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHH
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~--~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~a 489 (591)
+++ +++||||+||||||||+|||..+. ....+|.|++.|+|||||+|||++|++.|++|+.... ++.+. .++
T Consensus 202 ~~~--vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~---~~~el-~~a 275 (407)
T COG1419 202 QKR--VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVY---SPKEL-AEA 275 (407)
T ss_pred cCc--EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEec---CHHHH-HHH
Confidence 466 999999999999999999998776 5678999999999999999999999999999987543 23322 333
Q ss_pred HHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEE
Q 007747 490 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 490 l~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (591)
+.. +.++|++++||+|+.+.+......|..++.+..+..+.||..+|+-. ..+.+++. .+..+.++++
T Consensus 276 i~~--l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~------~dlkei~~----~f~~~~i~~~ 343 (407)
T COG1419 276 IEA--LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY------EDLKEIIK----QFSLFPIDGL 343 (407)
T ss_pred HHH--hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch------HHHHHHHH----HhccCCccee
Confidence 433 35679999999999999999999999999988777777777776533 22223333 3456799999
Q ss_pred EeccccccCCcEEE-EEeccc
Q 007747 570 LLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 570 IlTK~D~i~d~vGa-ls~~~~ 589 (591)
|+||+|+ +..+|. +|++++
T Consensus 344 I~TKlDE-T~s~G~~~s~~~e 363 (407)
T COG1419 344 IFTKLDE-TTSLGNLFSLMYE 363 (407)
T ss_pred EEEcccc-cCchhHHHHHHHH
Confidence 9999999 578898 888875
No 47
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=8.2e-24 Score=212.10 Aligned_cols=176 Identities=20% Similarity=0.244 Sum_probs=130.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~~ 467 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+..
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 13 RTVLKGVDLDVRRGE--ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 468999999999999 99999999999999999999999999999999886641 3889999754332
Q ss_pred hcc----cceeecCC-CCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 468 RLQ----VPIFEKGY-EKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 468 ~l~----v~l~~~~~-~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
.+. +.+....+ .... ...+.++++.+++... +..+..+||||+|++.||++|+ .+|+++|| ||||
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~-----~~p~llll-DEPt 164 (235)
T cd03261 91 SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA-----LDPELLLY-DEPT 164 (235)
T ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCc
Confidence 221 11111111 1122 2334556666655433 6777899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+. .+.+.|..+... +.++.+.+|.+.-+..++|++..+
T Consensus 165 ~~LD~~~~~-~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 165 AGLDPIASG-VIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ccCCHHHHH-HHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEE
Confidence 999999874 455777777653 455666666666666677877554
No 48
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=5.6e-24 Score=209.58 Aligned_cols=176 Identities=20% Similarity=0.182 Sum_probs=128.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhh-hhhc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTH-ARRL 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~-~~~l 469 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++ .++++++|.... ...+
T Consensus 14 ~~il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 458999999999999 9999999999999999999999999999999988764 248899997521 1111
Q ss_pred ----ccceeecCCCCC---HHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 470 ----QVPIFEKGYEKD---PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 470 ----~v~l~~~~~~~d---~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
++.+....++.. ....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 92 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll-DEPt~~L 165 (211)
T cd03225 92 TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA-----MDPDILLL-DEPTAGL 165 (211)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccC
Confidence 111111111111 1233455566555443 25677889999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+..+. .+.+.|..+...+.++.+.+|-+.-+..++|++..+
T Consensus 166 D~~~~~-~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 207 (211)
T cd03225 166 DPAGRR-ELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVL 207 (211)
T ss_pred CHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999875 455777777655555555556555566667776543
No 49
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=8.9e-24 Score=209.81 Aligned_cols=175 Identities=18% Similarity=0.218 Sum_probs=131.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQV 471 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~v 471 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++++++|...+...+.+
T Consensus 13 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 13 FEAVRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred EEeeeceeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 468999999999999 99999999999999999999999999999999886642 48999997644333221
Q ss_pred ----ceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 472 ----PIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 472 ----~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
.+....++.. ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~-----~~p~llll-DEPt~~LD~ 164 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLV-----HRPEVLFL-DEPTIGLDP 164 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccCCCH
Confidence 1111111221 22345566666655433 6778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 544 VDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
..+ ..+.+.|.++... +.++.+.+|-+.-+..++|++..
T Consensus 165 ~~~-~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~ 204 (220)
T cd03265 165 QTR-AHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAI 204 (220)
T ss_pred HHH-HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 987 4555788887664 44555555655556666777644
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7e-24 Score=210.55 Aligned_cols=176 Identities=22% Similarity=0.207 Sum_probs=130.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----ceeeeecchhhhhhhcc----c
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHARRLQ----V 471 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----~RigaveQl~~~~~~l~----v 471 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++ .++++++|...+...+. +
T Consensus 17 ~~il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 94 (220)
T cd03293 17 VTALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNV 94 (220)
T ss_pred eEEEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHH
Confidence 468999999999999 9999999999999999999999999999999998775 35899999754333221 1
Q ss_pred ceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 472 PIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 472 ~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
.+....++.. ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~-----~~p~lllL-DEPt~~LD~~~~~ 168 (220)
T cd03293 95 ALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALA-----VDPDVLLL-DEPFSALDALTRE 168 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-CCCCCCCCHHHHH
Confidence 1111111111 12344556666555432 5677899999999999999999 99999999 9999999999975
Q ss_pred HHHHHHHHHhhc-CCCCccceEEEeccccccCCcEEEE
Q 007747 548 SKFNQKLADLSS-SPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 548 ~~f~~~L~~l~~-~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
. +.+.|.++.. .+.++.+.+|-+.-+..++|++..+
T Consensus 169 ~-~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (220)
T cd03293 169 Q-LQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205 (220)
T ss_pred H-HHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4 4477777754 3455556666666566667766543
No 51
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=1e-23 Score=223.72 Aligned_cols=176 Identities=19% Similarity=0.161 Sum_probs=132.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTH-- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~-- 465 (591)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+
T Consensus 18 ~~~L~~vsl~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 468999999999999 99999999999999999999999999999999998762 48999997543
Q ss_pred ----hhhcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 466 ----ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 466 ----~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
.+++..++...+... +....+.++++.+++.+. +..+..+||||+||+.|||+|+ .+|+++|+ ||||+
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~-----~~P~iLLl-DEPts 169 (343)
T TIGR02314 96 SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALA-----SNPKVLLC-DEATS 169 (343)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCcc
Confidence 333333322111111 122345566776666544 7888999999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+||+..+.. +.+.|.++... +.++.+.+|-+.-+-.+||++..+
T Consensus 170 ~LD~~t~~~-i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 170 ALDPATTQS-ILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred cCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999754 44777777653 333333344444455667777554
No 52
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.90 E-value=4.2e-23 Score=220.07 Aligned_cols=233 Identities=20% Similarity=0.274 Sum_probs=168.1
Q ss_pred hchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccccccc
Q 007747 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQ 412 (591)
Q Consensus 333 ~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~ 412 (591)
....|....+.++|+..||++.++++|++.+..... ..+ . ......+...|... ..+++..++.+..
T Consensus 70 ~~~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~---~~~---~-~~~~~~~~~~l~~~------l~~~~~~~~~~~~ 136 (374)
T PRK14722 70 QRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEG---YDT---L-DAAADWAQSVLAAN------LPVLDSEDALMER 136 (374)
T ss_pred hccCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhcc---cCC---H-HHHHHHHHHHHHhc------chhhcCCCccccC
Confidence 334577789999999999999999999998865210 011 1 12233333333332 2345555566677
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhhhhcC-C-cEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHH
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-~-G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al 490 (591)
|+ +++|+||||||||||+++|++.+... + .+|.++++|+||+|+++|+++|++.++++++......+.. .++
T Consensus 137 g~--ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~----~~l 210 (374)
T PRK14722 137 GG--VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ----LAL 210 (374)
T ss_pred Cc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH----HHH
Confidence 88 99999999999999999999876543 3 4899999999999999999999999999987654444432 222
Q ss_pred HHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH-HHHHHHHHHhhcCCCCccceEE
Q 007747 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL-SKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 491 ~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~-~~f~~~L~~l~~~~~~~~it~I 569 (591)
. ...++|+++|||+|+.+.+..++..|..+.....|...+||..++++.+...+. ..|..... ........++++
T Consensus 211 ~--~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~--~p~~~~~~~~~~ 286 (374)
T PRK14722 211 A--ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAG--QPKAALPDLAGC 286 (374)
T ss_pred H--HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhc--ccccccCCCCEE
Confidence 2 345679999999999998888888888887777788888889999998876542 33322110 000011258999
Q ss_pred EeccccccCCcEEE-EEeccc
Q 007747 570 LLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 570 IlTK~D~i~d~vGa-ls~~~~ 589 (591)
|+||+|+. .++|. |+++++
T Consensus 287 I~TKlDEt-~~~G~~l~~~~~ 306 (374)
T PRK14722 287 ILTKLDEA-SNLGGVLDTVIR 306 (374)
T ss_pred EEeccccC-CCccHHHHHHHH
Confidence 99999995 57787 887654
No 53
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.90 E-value=2.2e-23 Score=202.53 Aligned_cols=150 Identities=21% Similarity=0.248 Sum_probs=114.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-----------eeeeecchhh--h-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT--H- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-----------RigaveQl~~--~- 465 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|... +
T Consensus 5 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGE--VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 458999999999999 99999999999999999999999999999999886641 3789999752 1
Q ss_pred ----hhhcccceeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 466 ----ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 466 ----~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
.+++.+... .++... ...+.++++.+++.. .+..+.++||||+|++.|+++|+ .+|+++|| |||
T Consensus 83 ~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPL--NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVA-----MRPDVLLL-DEP 154 (190)
T ss_pred cccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCC
Confidence 222221111 111122 123455566555543 36778899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcC
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
|+|||+..+. .+.+.|.++...
T Consensus 155 t~~LD~~~~~-~~~~~l~~~~~~ 176 (190)
T TIGR01166 155 TAGLDPAGRE-QMLAILRRLRAE 176 (190)
T ss_pred cccCCHHHHH-HHHHHHHHHHHc
Confidence 9999999874 455777777654
No 54
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.90 E-value=1.5e-23 Score=210.08 Aligned_cols=176 Identities=18% Similarity=0.185 Sum_probs=131.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR-- 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~-- 467 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++++++|...+..
T Consensus 13 ~~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 458999999999999 99999999999999999999999999999999887641 3889999754332
Q ss_pred ----hcccceeecCC-----------CCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 468 ----RLQVPIFEKGY-----------EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 468 ----~l~v~l~~~~~-----------~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
++......... .......+.++++.+++... +..+.++||||+|++.|+++|+ .+|+++
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA-----TDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 22211111000 00112334556666655433 5778899999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|.++...+.++.+.+|-+.-+..++|++..+
T Consensus 166 ll-DEPt~~LD~~~~~-~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 216 (236)
T cd03219 166 LL-DEPAAGLNPEETE-ELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL 216 (236)
T ss_pred EE-cCCcccCCHHHHH-HHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99 9999999999874 455788887755556666666666677777877554
No 55
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.90 E-value=1.8e-23 Score=225.90 Aligned_cols=177 Identities=18% Similarity=0.147 Sum_probs=138.4
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhh--
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHAR-- 467 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~-- 467 (591)
...+|++++|++.+|+ +++|+|||||||||||++|+|+++|..|+|.+.|.++. ++|+++|...+..
T Consensus 15 ~~~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 15 DTTVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred CEEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 4568999999999999 99999999999999999999999999999999998752 4899999754322
Q ss_pred ----hcccceee--cCC---CCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 468 ----RLQVPIFE--KGY---EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 468 ----~l~v~l~~--~~~---~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
++.+..+. ... .......+.++++.+++... +..+..+||||+||+.|||+|+ .+|+++|| |||
T Consensus 93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~-----~~P~iLLL-DEP 166 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA-----QATPVLLL-DEP 166 (402)
T ss_pred CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECC
Confidence 22111110 011 12223456777777776554 6778899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+|||+..+.. +.+.|..+...+.++.+++|.+.-+..++|++..|
T Consensus 167 tsgLD~~~~~~-l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l 212 (402)
T PRK09536 167 TASLDINHQVR-TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL 212 (402)
T ss_pred cccCCHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99999998754 45888888765566677777777777778887654
No 56
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.90 E-value=1.7e-23 Score=205.92 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=129.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhcc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l~-- 470 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 13 ~~~l~~~~~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGE--IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 468999999999999 99999999999999999999999999999999988752 4889999754332221
Q ss_pred --cceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 471 --VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 471 --v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
+.++...+.. ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+.
T Consensus 91 e~l~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEPt~~LD~~~~~ 163 (208)
T cd03268 91 ENLRLLARLLGI-RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALL-----GNPDLLIL-DEPTNGLDPDGIK 163 (208)
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHh-----cCCCEEEE-CCCcccCCHHHHH
Confidence 1111111111 22345566666655433 5778899999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+.+.|..+...+.++.+.+|-+.-+..++|++..+
T Consensus 164 -~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l 199 (208)
T cd03268 164 -ELRELILSLRDQGITVLISSHLLSEIQKVADRIGII 199 (208)
T ss_pred -HHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 455777777654444444445555555567766543
No 57
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.3e-23 Score=214.37 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=131.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchh-------
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLR------- 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~------- 463 (591)
..+|+++||++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.|.++ .++|+++|..
T Consensus 18 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 18 TKALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred CeeeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 358999999999999 9999999999999999999999999999999999765 2489999975
Q ss_pred hhhhhcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 464 THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 464 ~~~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
+..+++.......+... .....+.++++.+++... +..+.++||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~-----~~p~llll-DEPt~~L 169 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLA-----MDPDVIVL-DEPMAYL 169 (274)
T ss_pred cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCCcCC
Confidence 22222222111111111 112344556666655443 6778899999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+..+. .+.+.|..+...+.++.+.+|-+.-+..++|++..+
T Consensus 170 D~~~~~-~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l 211 (274)
T PRK13647 170 DPRGQE-TLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVL 211 (274)
T ss_pred CHHHHH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999975 455788887655445555555555555567776554
No 58
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.90 E-value=2.7e-23 Score=204.96 Aligned_cols=176 Identities=16% Similarity=0.143 Sum_probs=127.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~~ 467 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. ++++++|...+..
T Consensus 14 ~~~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 358999999999999 99999999999999999999999999999999987642 3889998754332
Q ss_pred ------hcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 468 ------RLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 468 ------~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
++........... .....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 92 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~ 165 (214)
T cd03292 92 DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV-----NSPTILIA-DEPTG 165 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHH-----cCCCEEEE-eCCCC
Confidence 2221111111111 112334555665554332 5677889999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .+.+.|.++...+.++.+.+|-..-++.++|++..+
T Consensus 166 ~LD~~~~~-~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 166 NLDPDTTW-EIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred cCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999874 455778777654444444444444455566665443
No 59
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=3.6e-23 Score=203.51 Aligned_cols=173 Identities=13% Similarity=0.047 Sum_probs=131.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHA----- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~----- 466 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|...+.
T Consensus 14 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 14 RILFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEEEecceEEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 458999999999999 99999999999999999999999999999999987752 377887754332
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 467 -~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
+++.+.. ..++......+.++++.+++..+ +..+.++|||++|++.|+++|+ .+|+++|| ||||+|||+.
T Consensus 92 ~e~l~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt~~LD~~ 163 (204)
T PRK13538 92 LENLRFYQ--RLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWL-----TRAPLWIL-DEPFTAIDKQ 163 (204)
T ss_pred HHHHHHHH--HhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCccCCHH
Confidence 2222211 11111223345566666655433 6778899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
.+. .+.+.|..+...+.++.+.+|-.+-++....+++.
T Consensus 164 ~~~-~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~ 201 (204)
T PRK13538 164 GVA-RLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLR 201 (204)
T ss_pred HHH-HHHHHHHHHHHCCCEEEEEecChhhhccCCceEEe
Confidence 874 45578888766556667777777777776555543
No 60
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.9e-23 Score=208.84 Aligned_cols=176 Identities=18% Similarity=0.142 Sum_probs=129.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhcc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l~-- 470 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 15 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 15 FVALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EEeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 468999999999999 99999999999999999999999999999999987652 4899999754332221
Q ss_pred --cceeecCCCC----CH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 471 --VPIFEKGYEK----DP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 471 --v~l~~~~~~~----d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
+.+....+.. .. ...+.++++.+++... +..+.++||||+|++.|+++|+ .+|+++|| ||||+|
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEP~~~ 166 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA-----VEPKVLLL-DEPFGA 166 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccc
Confidence 1111111110 11 2334455666555432 5677899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+..+. .+.+.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 167 LD~~~~~-~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 210 (239)
T cd03296 167 LDAKVRK-ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM 210 (239)
T ss_pred CCHHHHH-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999874 455788877653 445555555555555667776543
No 61
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.89 E-value=2.7e-23 Score=204.85 Aligned_cols=176 Identities=18% Similarity=0.177 Sum_probs=129.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-----------eeeeecchhhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTHARR 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-----------RigaveQl~~~~~~ 468 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++++++|...+...
T Consensus 13 ~~~l~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGE--VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 458999999999999 99999999999999999999999999999999987651 38899987643322
Q ss_pred cc----cceeec-CCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 469 LQ----VPIFEK-GYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 469 l~----v~l~~~-~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
+. +.+... .++... ...+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 91 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEP~~ 164 (213)
T cd03262 91 LTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA-----MNPKVMLF-DEPTS 164 (213)
T ss_pred CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcc
Confidence 21 111100 011111 223445555554433 25677889999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .+.+.|.++...+.++.+.+|-..-+..++|++..+
T Consensus 165 ~LD~~~~~-~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 165 ALDPELVG-EVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred CCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999874 555888888765555555666666666667766543
No 62
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.89 E-value=2e-23 Score=207.09 Aligned_cols=176 Identities=19% Similarity=0.140 Sum_probs=129.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhhhc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~~l 469 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++++++|...+...+
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGE--IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 458999999999999 99999999999999999999999999999999986641 389999976443322
Q ss_pred c----cceeecCCC-CCHHHHHHHHHHHhh-hc-CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 470 Q----VPIFEKGYE-KDPAIVAKEAIQEAT-RN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 470 ~----v~l~~~~~~-~d~~~~a~~al~~~~-~~-~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
. +.+....+. ......+.++++.+. +. ..+..+.++||||+|++.|+++|+ .+|+++|| ||||+|||
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~LD 164 (222)
T cd03224 91 TVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM-----SRPKLLLL-DEPSEGLA 164 (222)
T ss_pred cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-CCCcccCC
Confidence 1 111111111 112233444555542 22 236778899999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+..+ ..+.+.|..+...+.++.+.+|-+.-+..++|++..+
T Consensus 165 ~~~~-~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (222)
T cd03224 165 PKIV-EEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVL 205 (222)
T ss_pred HHHH-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEe
Confidence 9987 4555788877655455555555555555667776543
No 63
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.2e-23 Score=207.20 Aligned_cols=176 Identities=18% Similarity=0.176 Sum_probs=131.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTH-- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~-- 465 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.|.++. ++++++|...+
T Consensus 14 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 458999999999999 99999999999999999999999999999999987642 38899986533
Q ss_pred ----hhhcccceeec--------C-CCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 466 ----ARRLQVPIFEK--------G-YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 466 ----~~~l~v~l~~~--------~-~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+++....... . ........+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM-----QQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 22222211100 0 011122344555666555432 5677899999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 167 ll-DEPt~~LD~~~~~-~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 167 LA-DEPVASLDPASSR-QVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred EE-eCccccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99 9999999999874 455778877643 455666666666666677877654
No 64
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.89 E-value=5.3e-23 Score=202.93 Aligned_cols=176 Identities=18% Similarity=0.132 Sum_probs=128.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhcc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l~-- 470 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|.+|+|.+.+.++. ++++++|...+...+.
T Consensus 13 ~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 13 VTALDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 358999999999999 99999999999999999999999999999999987752 4899999764432221
Q ss_pred --cceeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 471 --VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 471 --v~l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
+.+....++... ...+.++++.+++.. .+..+.++||||+|++.|+++|. .+|+++|| ||||+|||+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~-----~~p~llll-DEPt~~LD~~ 164 (213)
T cd03301 91 DNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV-----REPKVFLM-DEPLSNLDAK 164 (213)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHH
Confidence 111111111111 223445555555443 26777899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 545 DQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+. .+.+.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 165 ~~~-~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 204 (213)
T cd03301 165 LRV-QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM 204 (213)
T ss_pred HHH-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 874 455777777653 444444555444455566766543
No 65
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.2e-23 Score=214.69 Aligned_cols=176 Identities=14% Similarity=0.156 Sum_probs=132.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchhh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRT-- 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~~-- 464 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++|+++|...
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 358999999999999 99999999999999999999999999999999997641 3899999641
Q ss_pred h-----hhhcccceeecCCC-CCHHHHHHHHHHHhhhc-CC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 465 H-----ARRLQVPIFEKGYE-KDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 465 ~-----~~~l~v~l~~~~~~-~d~~~~a~~al~~~~~~-~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
+ .+++.......... .+....+.++++.+++. .+ +..+.++||||+||+.|+++|+ .+|+++|| ||
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~-----~~p~lLlL-DE 171 (287)
T PRK13641 98 LFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA-----YEPEILCL-DE 171 (287)
T ss_pred hccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-EC
Confidence 2 22222111111111 11223455666666664 33 6778899999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+|||+..+. .+.+.|..+...+.++.+.+|.+.-+..+||++..|
T Consensus 172 Pt~gLD~~~~~-~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l 218 (287)
T PRK13641 172 PAAGLDPEGRK-EMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL 218 (287)
T ss_pred CCCCCCHHHHH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999874 555788887655555556666666666778887654
No 66
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.89 E-value=4.7e-23 Score=204.02 Aligned_cols=175 Identities=19% Similarity=0.212 Sum_probs=129.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcc--
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 470 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~-- 470 (591)
.+|++++|++.+|+ +++|+|+||||||||++.|+|++.|+.|+|.+.+.++. ++|+++|...+...+.
T Consensus 19 ~il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 58999999999999 99999999999999999999999999999999887642 4889999764433221
Q ss_pred --cceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 471 --VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 471 --v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
+.+....++.. ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+.
T Consensus 97 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~illl-DEPt~~LD~~ 170 (218)
T cd03266 97 ENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV-----HDPPVLLL-DEPTTGLDVM 170 (218)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCcCCCHH
Confidence 11111111111 12344556666655432 5677889999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+ ..+.+.|..+...+.++.+.+|-..-+..++|++..+
T Consensus 171 ~~-~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l 209 (218)
T cd03266 171 AT-RALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVL 209 (218)
T ss_pred HH-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 87 4566888887655444444444444455566766543
No 67
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.4e-23 Score=212.48 Aligned_cols=179 Identities=20% Similarity=0.190 Sum_probs=131.9
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchh
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLR 463 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~ 463 (591)
+....+|++++|++.+|+ +++|+||||||||||+++|+|++.|..|+|.+.|.++ .++|+++|..
T Consensus 34 ~~~~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 345678999999999999 9999999999999999999999999999999988664 1489999975
Q ss_pred hhhhhc------ccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 464 THARRL------QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 464 ~~~~~l------~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
.+...+ .+.+...+... .....+.++++.+++... +..+..+||||+|++.||++|+ .+|+++|| |
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~-----~~p~illL-D 185 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA-----VDPDILLM-D 185 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-c
Confidence 433222 21111111111 112334556666655433 5677889999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+. .+.+.|.++... +.++.+.+|-+..+..++|++..+
T Consensus 186 EPt~~LD~~~~~-~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l 234 (269)
T cd03294 186 EAFSALDPLIRR-EMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM 234 (269)
T ss_pred CCCccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999999874 455777777543 455556666666666667776554
No 68
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.89 E-value=3.2e-23 Score=205.43 Aligned_cols=175 Identities=13% Similarity=0.130 Sum_probs=129.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~- 470 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+...+.
T Consensus 15 ~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 458999999999999 99999999999999999999999999999999987752 4899999654332221
Q ss_pred ---cceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 471 ---VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 471 ---v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+.+....++.. ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEP~~~LD~ 166 (220)
T cd03263 93 REHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALI-----GGPSVLLL-DEPTSGLDP 166 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHh-----cCCCEEEE-CCCCCCCCH
Confidence 11111111111 12334556665555332 5677889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+. .+.+.|..+... .++.+.+|-+.-+..++|++..+
T Consensus 167 ~~~~-~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l 205 (220)
T cd03263 167 ASRR-AIWDLILEVRKG-RSIILTTHSMDEAEALCDRIAIM 205 (220)
T ss_pred HHHH-HHHHHHHHHhcC-CEEEEEcCCHHHHHHhcCEEEEE
Confidence 9874 455778777653 44555555555566667776543
No 69
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.3e-23 Score=211.57 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=133.5
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc---cc-------ceeeeecchhhhhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC---DT-------FRSGAVEQLRTHARR 468 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~---Dt-------~RigaveQl~~~~~~ 468 (591)
...++++|++.++.|+ .++|+|||||||||+|++|||+..|+.|+|.+.+. |+ .|+|+|+|...+..+
T Consensus 14 ~~~a~~di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4557889999999999 99999999999999999999999999999999998 76 469999997755555
Q ss_pred cc----cceee--cCC---CCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 469 LQ----VPIFE--KGY---EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 469 l~----v~l~~--~~~---~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
|. |.|-. ... .......+.+.++.+++.++ +.++.++|||++||++|||+|+ .+|+++|| |||+
T Consensus 92 mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA-----~eP~vLLL-DEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA-----VEPKVLLL-DEPF 165 (345)
T ss_pred chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh-----cCCCeEee-cCCc
Confidence 42 22211 111 12223556677888888887 7999999999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHY 582 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vG 582 (591)
.+||+.-+ ..+..-|..+.+. .+++++.+|. .-+++|++-
T Consensus 166 ~ALDa~vr-~~lr~wLr~~~~~---~~~ttvfVTHD~eea~~ladrvv 209 (345)
T COG1118 166 GALDAKVR-KELRRWLRKLHDR---LGVTTVFVTHDQEEALELADRVV 209 (345)
T ss_pred hhhhHHHH-HHHHHHHHHHHHh---hCceEEEEeCCHHHHHhhcceEE
Confidence 99999775 4565666666554 3566666664 334455543
No 70
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.1e-23 Score=205.51 Aligned_cols=175 Identities=14% Similarity=0.227 Sum_probs=126.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----ceeeeecchhhhhhhcc----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQ---- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----~RigaveQl~~~~~~l~---- 470 (591)
..++++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++ .++++++|...+...+.
T Consensus 13 ~~~l~~v~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 90 (210)
T cd03269 13 VTALDDISFSVEKGE--IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQ 90 (210)
T ss_pred EEEEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHH
Confidence 458999999999999 9999999999999999999999999999999998775 25899998754332221
Q ss_pred cceeecCCCC---CHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 471 VPIFEKGYEK---DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 471 v~l~~~~~~~---d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+.+....++. .....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|+|+..+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~~lll-DEP~~~LD~~~~ 164 (210)
T cd03269 91 LVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI-----HDPELLIL-DEPFSGLDPVNV 164 (210)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCHHHH
Confidence 1111111111 11234455565555433 25677889999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
. .+.+.|..+...+.++.+.+|-+.-+..++|++..
T Consensus 165 ~-~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 165 E-LLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred H-HHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE
Confidence 4 45577877765444444444444444455665543
No 71
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.89 E-value=5.8e-23 Score=205.22 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=130.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------ceeeeecchhhhhhhc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARRL 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~RigaveQl~~~~~~l 469 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++ .++++++|...+...+
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 13 RKVVNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EEeeccceeEecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 458999999999999 9999999999999999999999999999999988654 1388999976433322
Q ss_pred c----cceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 470 Q----VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 470 ~----v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
. +.+....++... ...+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt~~L 164 (232)
T cd03218 91 TVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALA-----TNPKFLLL-DEPFAGV 164 (232)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCcccC
Confidence 1 111111111111 2234455555544432 5677889999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+..+. .+.+.|..+...+.++.+.+|-+..+..++|++..+
T Consensus 165 D~~~~~-~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 206 (232)
T cd03218 165 DPIAVQ-DIQKIIKILKDRGIGVLITDHNVRETLSITDRAYII 206 (232)
T ss_pred CHHHHH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999874 455788887665555556666666667777877544
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.89 E-value=3.4e-23 Score=208.34 Aligned_cols=176 Identities=17% Similarity=0.181 Sum_probs=129.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~~ 467 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.|.++. ++|+++|...+..
T Consensus 15 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 458999999999999 99999999999999999999999999999999987641 3889998754322
Q ss_pred ------hcccceeec---------CCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 468 ------RLQVPIFEK---------GYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 468 ------~l~v~l~~~---------~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
++....... .........+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~ll 167 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA-----QQPDLI 167 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 222111100 0011122334555665554332 5677899999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 168 ll-DEPt~~LD~~~~~-~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 168 LA-DEPIASLDPKTSK-QVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred EE-eCCcccCCHHHHH-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 99 9999999999874 455788777543 445555566655566667776554
No 73
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.89 E-value=3.6e-23 Score=220.95 Aligned_cols=177 Identities=19% Similarity=0.190 Sum_probs=133.2
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTH 465 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~~~ 465 (591)
...+|+++||++.+|+ +++|+|||||||||||++|+|++.|+.|+|.|.|.++. ++|+++|...+
T Consensus 5 ~~~~l~~vs~~i~~Ge--i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGE--IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCC--EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 3458999999999999 99999999999999999999999999999999998752 38999997544
Q ss_pred hh------hcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 466 AR------RLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 466 ~~------~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
.. ++.+.....+... .....+.++++.+++..+ +..+..+||||+||+.|||+|+ .+|+++|| |||
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~-----~~p~iLLl-DEP 156 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALA-----AEPDILLM-DEA 156 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCC
Confidence 33 3322111111111 122445666776666543 6788899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|++||+..+.. +.+.|..+... +.++.+.+|-+..+-.++|++..+
T Consensus 157 ~saLD~~~r~~-l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl 203 (363)
T TIGR01186 157 FSALDPLIRDS-MQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIM 203 (363)
T ss_pred cccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999754 44677777543 455555555555555667776543
No 74
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.4e-23 Score=219.79 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=133.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhh-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHA- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~- 466 (591)
..+|++++|++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+.
T Consensus 18 ~~il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 18 IHALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 568999999999999 99999999999999999999999999999999988752 389999975433
Q ss_pred -----hhcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 467 -----RRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 467 -----~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
+++.++....+... .....+.++++.+++... +..+..+||||+||+.||++|+ .+|+++|| ||||+
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p~iLlL-DEPts 169 (343)
T PRK11153 96 SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA-----SNPKVLLC-DEATS 169 (343)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 22222211111111 112345556666655443 6778899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .+.+.|.++... +.++.+.+|-+.-+..+||++..|
T Consensus 170 ~LD~~~~~-~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 170 ALDPATTR-SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred cCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999874 455778777653 455666666666667778877554
No 75
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.8e-23 Score=220.50 Aligned_cols=173 Identities=18% Similarity=0.167 Sum_probs=130.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhc---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l--- 469 (591)
..+|++++|++.+|+ +++|+|||||||||||++|||++.|+.|+|.+.|.++. ++|+++|...+...+
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 17 TQVIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CEEEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 468999999999999 99999999999999999999999999999999998762 499999976544333
Q ss_pred ---ccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 470 ---QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 470 ---~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
..++....... +....+.++++.+++..+ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~-----~~P~llLL-DEP~s~LD~~ 168 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV-----REPAVFLF-DEPLSNLDAK 168 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHH
Confidence 22221111111 112445666776666544 6778899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEEE
Q 007747 545 DQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQW 584 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGal 584 (591)
.+.. +.+.|+.+... .+++.|++|. +-.++|++..+
T Consensus 169 ~r~~-l~~~l~~l~~~---~g~tii~vTHd~~ea~~l~D~i~vl 208 (356)
T PRK11650 169 LRVQ-MRLEIQRLHRR---LKTTSLYVTHDQVEAMTLADRVVVM 208 (356)
T ss_pred HHHH-HHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 8754 44667766543 2445555554 44567776553
No 76
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4e-23 Score=214.04 Aligned_cols=174 Identities=15% Similarity=0.185 Sum_probs=131.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----------ceeeeecchhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT---- 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----------~RigaveQl~~---- 464 (591)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++ .++|+++|...
T Consensus 20 ~~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 20 KKALDNVNIEIEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc
Confidence 358999999999999 9999999999999999999999999999999998765 14899999642
Q ss_pred ---hhhhcccceeecCCCCCH---HHHHHHHHHHhhhc--C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 465 ---HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN--G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 465 ---~~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~--~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
..+++. +....++... ...+.++++.+++. . .+..+..+||||+||+.||++|+ .+|+++|| |
T Consensus 98 ~~tv~e~l~--~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~-----~~P~llll-D 169 (287)
T PRK13637 98 EETIEKDIA--FGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA-----MEPKILIL-D 169 (287)
T ss_pred cccHHHHHH--hHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-E
Confidence 122221 1111112222 23456667776664 2 46778899999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+. .+.+.|.++... +.++.+.+|-+..+..+||++..+
T Consensus 170 EPt~gLD~~~~~-~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l 218 (287)
T PRK13637 170 EPTAGLDPKGRD-EILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVM 218 (287)
T ss_pred CCccCCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999875 455788887654 445555555555666667877654
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.89 E-value=6.9e-23 Score=204.23 Aligned_cols=175 Identities=20% Similarity=0.238 Sum_probs=129.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh-----hcCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-----LQHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l-----~~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++ .|..|+|.+.+.++. ++|+++|..
T Consensus 13 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 13 KHALKDISLDIPKGE--ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 458999999999999 99999999999999999999999 899999999987641 388999976
Q ss_pred hhh-----hhcccceeecCCCCC--HHHHHHHHHHHhhhcCC-Ccc--hhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 464 THA-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRNGS-DVV--LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~~~~d--~~~~a~~al~~~~~~~~-d~v--liDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+. +++.......+.... ....+.++++.+++... +.. +..+||||+|++.|+++|+ .+|+++||
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~llll 165 (227)
T cd03260 91 NPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA-----NEPEVLLL 165 (227)
T ss_pred hhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 443 222211111111111 12344556666555432 333 4889999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+. .+.+.|.++... .++.+.+|-+.-+..++|++..+
T Consensus 166 -DEPt~~LD~~~~~-~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l 213 (227)
T cd03260 166 -DEPTSALDPISTA-KIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFL 213 (227)
T ss_pred -eCCCccCCHHHHH-HHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEE
Confidence 9999999999875 455788887665 55566666666666667776543
No 78
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.7e-23 Score=208.48 Aligned_cols=176 Identities=20% Similarity=0.203 Sum_probs=137.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH---- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~---- 465 (591)
..+|+++++.+.+|+ +++|+|+|||||||+++.|+|+++|+.|.|.+.+.++. ++|+|+|.+..
T Consensus 17 ~~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGE--RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 578999999999999 99999999999999999999999999999999998742 49999998732
Q ss_pred ---hhhcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 466 ---ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 466 ---~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
.+.+.+.....+... +...++.++++.+.+.++ +..+..+|||++||++||.+|+ .+|+++|| ||||+|
T Consensus 95 ~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa-----~~P~iliL-DEPta~ 168 (235)
T COG1122 95 PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA-----MGPEILLL-DEPTAG 168 (235)
T ss_pred CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH-----cCCCEEEE-cCCCCC
Confidence 222222111122222 223556677777776655 7889999999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+..+.. +.+.+.++... +.++.+..|-+..+-.++|++-.+
T Consensus 169 LD~~~~~~-l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl 212 (235)
T COG1122 169 LDPKGRRE-LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVL 212 (235)
T ss_pred CCHHHHHH-HHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEE
Confidence 99999854 44788888776 356666666666677767766543
No 79
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.3e-23 Score=211.71 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=129.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----------ceeeeecchhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT---- 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----------~RigaveQl~~---- 464 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++ .++|+++|...
T Consensus 14 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 14 EPVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred cccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 458999999999999 9999999999999999999999999999999998764 13899999653
Q ss_pred ---hhhhcccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 465 ---HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 465 ---~~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
..+++.... ..++... ...+.++++.+++.++ +..+..+||||+|++.|+++|+ .+|+++|| |||
T Consensus 92 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~-----~~p~lllL-DEP 163 (271)
T PRK13638 92 YTDIDSDIAFSL--RNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV-----LQARYLLL-DEP 163 (271)
T ss_pred cccHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCC
Confidence 112221111 1112222 2234455665554443 5677899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+|||+..+. .+.+.|.++...+.++.+.+|-+.-+..++|++..+
T Consensus 164 t~~LD~~~~~-~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 164 TAGLDPAGRT-QMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred cccCCHHHHH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999874 455788887655455555556656666667777554
No 80
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.8e-23 Score=206.46 Aligned_cols=169 Identities=21% Similarity=0.192 Sum_probs=126.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~~~~ 466 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++|+++|...+.
T Consensus 22 ~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (233)
T PRK11629 22 TDVLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99 (233)
T ss_pred eeeEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccC
Confidence 458999999999999 9999999999999999999999999999999998764 1389999975433
Q ss_pred h------hcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 R------RLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 ~------~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
. ++.+......... .....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 100 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~-----~~p~lllL-DEPt 173 (233)
T PRK11629 100 PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV-----NNPRLVLA-DEPT 173 (233)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCC
Confidence 2 2222111111111 122345566666665443 5677889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhc-CCCCccceEEEecccccc
Q 007747 539 VGNDAVDQLSKFNQKLADLSS-SPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~-~~~~~~it~IIlTK~D~i 577 (591)
+|||+..+. .+.+.|.++.. .+.++.+.+|-+.-+..+
T Consensus 174 ~~LD~~~~~-~l~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 174 GNLDARNAD-SIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred CCCCHHHHH-HHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 999999874 45578887764 345555555555555554
No 81
>PRK10908 cell division protein FtsE; Provisional
Probab=99.89 E-value=8.3e-23 Score=203.15 Aligned_cols=176 Identities=14% Similarity=0.058 Sum_probs=128.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~~ 467 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++++++|...+..
T Consensus 15 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 468999999999999 99999999999999999999999999999999987642 3789998754322
Q ss_pred hcc----cceeecCCCCCHH---HHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 468 RLQ----VPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 468 ~l~----v~l~~~~~~~d~~---~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
.+. +.+....++.... ..+.++++.+.+.. .+..+..+||||+|++.|+++|. .+|+++|| ||||+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~ 166 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV-----NKPAVLLA-DEPTG 166 (222)
T ss_pred cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCCC
Confidence 221 1111111111222 23445555555433 25677899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .+.+.|.++...+.++.+.+|-+.-+..++|++..+
T Consensus 167 ~LD~~~~~-~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 167 NLDDALSE-GILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred cCCHHHHH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999874 455788887655444444555545566667766543
No 82
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=5.6e-23 Score=203.68 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=135.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------eeeeecchhhhhhhcc---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRTHARRLQ--- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------RigaveQl~~~~~~l~--- 470 (591)
..++++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 24 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 24 EPVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred ceeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHH
Confidence 458999999999999 99999999999999999999999999999999987652 3888988654322221
Q ss_pred -cceeecCCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 471 -VPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 471 -v~l~~~~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
+.+....++......+.++++.+.+.. .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|+|+..+ .
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~LD~~~~-~ 174 (214)
T PRK13543 102 NLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWL-----SPAPLWLL-DEPYANLDLEGI-T 174 (214)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHH-H
Confidence 111111112223334455666665543 36778899999999999999999 99999999 999999999987 4
Q ss_pred HHHHHHHHhhcCCCCccceEEEeccccccCCcEEEEEec
Q 007747 549 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQWSMC 587 (591)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGals~~ 587 (591)
.+.+.|..+...+.++.+.+|-..-+..+++++-.++.+
T Consensus 175 ~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~~ 213 (214)
T PRK13543 175 LVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEAA 213 (214)
T ss_pred HHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEeec
Confidence 566888887766666666777777777777776556653
No 83
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=5e-23 Score=204.20 Aligned_cols=174 Identities=18% Similarity=0.167 Sum_probs=126.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~~~~ 466 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|..|+|.+.+.++ .++++++|...+.
T Consensus 18 ~~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 458999999999999 9999999999999999999999999999999988664 1389999975443
Q ss_pred hhc------ccceeecCCCC-CHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 RRL------QVPIFEKGYEK-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 ~~l------~v~l~~~~~~~-d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
..+ .+......... .....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 96 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~illl-DEPt 169 (221)
T TIGR02211 96 PDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV-----NQPSLVLA-DEPT 169 (221)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----CCCCEEEE-eCCC
Confidence 322 21111111111 11233455566555433 25677889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+|||+..+. .+.+.|..+... +.++.+.+|-+.-++. +|++..
T Consensus 170 ~~LD~~~~~-~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~ 213 (221)
T TIGR02211 170 GNLDNNNAK-IIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLE 213 (221)
T ss_pred CcCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEE
Confidence 999999874 455788777643 4444555555544544 355543
No 84
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.7e-23 Score=209.95 Aligned_cols=176 Identities=19% Similarity=0.208 Sum_probs=130.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----eeeeecchhhhh------hhc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RSGAVEQLRTHA------RRL 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----RigaveQl~~~~------~~l 469 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.|.++. ++|+++|...+. +++
T Consensus 14 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l 91 (255)
T PRK11248 14 KPALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNV 91 (255)
T ss_pred eeeEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHH
Confidence 458999999999999 99999999999999999999999999999999987762 489999975432 222
Q ss_pred ccceeecCCC-CCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 470 QVPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 470 ~v~l~~~~~~-~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
.......+.. ......+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~-----~~p~lllL-DEPt~~LD~~~~~ 165 (255)
T PRK11248 92 AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALA-----ANPQLLLL-DEPFGALDAFTRE 165 (255)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCccCCHHHHH
Confidence 2111101111 1112334555666554432 5678899999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHHhhc-CCCCccceEEEeccccccCCcEEEE
Q 007747 548 SKFNQKLADLSS-SPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 548 ~~f~~~L~~l~~-~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+.+.|..+.. .+.++.+.+|-+.-+..++|++..|
T Consensus 166 -~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 166 -QMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL 202 (255)
T ss_pred -HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 55577877743 3455566666666667777876554
No 85
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.89 E-value=5.1e-23 Score=219.29 Aligned_cols=176 Identities=17% Similarity=0.152 Sum_probs=133.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARR---- 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~---- 468 (591)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++ .++|+++|...+...
T Consensus 15 ~~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 15 TQVLNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred eEEEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 468999999999999 9999999999999999999999999999999999876 259999997644333
Q ss_pred --cccceeec-C-CCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 469 --LQVPIFEK-G-YEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 469 --l~v~l~~~-~-~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
+..++... . ..... ...+.++++.+++.++ +..+..+||||+||+.|+|+|+ .+|+++|| ||||+|
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~-----~~P~llLL-DEP~s~ 166 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA-----VEPQILLL-DEPFGA 166 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcc
Confidence 32222110 0 11122 2355666776666544 6788899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+..+. .+.+.|..+..+ +.++.+.+|-...+..++|++..+
T Consensus 167 LD~~~r~-~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl 210 (353)
T PRK10851 167 LDAQVRK-ELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVM 210 (353)
T ss_pred CCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999875 444777777654 344555555555566677877554
No 86
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.89 E-value=6.5e-23 Score=204.80 Aligned_cols=176 Identities=22% Similarity=0.173 Sum_probs=129.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhhhc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~~l 469 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 13 SHILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred eEEecceeeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 458999999999999 99999999999999999999999999999999987642 388999876443322
Q ss_pred cc----ceeecCCCCCHHHHHHHHHHHhh-hcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 QV----PIFEKGYEKDPAIVAKEAIQEAT-RNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 ~v----~l~~~~~~~d~~~~a~~al~~~~-~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
.+ .+....++......+.++++.+. ... .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~illl-DEPt~~LD~ 164 (230)
T TIGR03410 91 TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV-----TRPKLLLL-DEPTEGIQP 164 (230)
T ss_pred cHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCcccCCH
Confidence 11 11111122222233455555544 222 36778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+. .+.+.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 165 ~~~~-~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 205 (230)
T TIGR03410 165 SIIK-DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVM 205 (230)
T ss_pred HHHH-HHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 9974 455778777653 455555556555566667776543
No 87
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.89 E-value=6.4e-23 Score=201.14 Aligned_cols=172 Identities=20% Similarity=0.147 Sum_probs=124.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~~~~ 466 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++ .++++++|...+.
T Consensus 11 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGK--MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 458999999999999 9999999999999999999999999999999998773 1488899876443
Q ss_pred hhcc----cceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 RRLQ----VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 ~~l~----v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
..+. +.+.....+.. ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 89 ~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~-----~~p~llll-DEPt 162 (206)
T TIGR03608 89 ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL-----KDPPLILA-DEPT 162 (206)
T ss_pred cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCc
Confidence 3221 11111111111 12334556666555433 6778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
+|||+..+ ..|.+.|..+...+.++.+.+|-..-.+ .+|++
T Consensus 163 ~~LD~~~~-~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i 203 (206)
T TIGR03608 163 GSLDPKNR-DEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRV 203 (206)
T ss_pred CCCCHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEE
Confidence 99999987 4565888877654444444444333333 34443
No 88
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.89 E-value=3.7e-23 Score=220.36 Aligned_cols=177 Identities=20% Similarity=0.200 Sum_probs=132.4
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhc--
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL-- 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l-- 469 (591)
...+|++++|++.+|+ +++|+|||||||||||++|||++.|+.|+|.+.|.++. ++|+++|...+...+
T Consensus 16 ~~~~l~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 16 AFTALKDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred CeEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 3468999999999999 99999999999999999999999999999999998762 499999976444333
Q ss_pred ----ccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 ----QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 ----~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
..++....... +....+.++++.+++..+ +..+..+||||+||++|+|+|+ .+|+++|| |||+++||+
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~-----~~P~llLL-DEP~s~LD~ 167 (353)
T TIGR03265 94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA-----TSPGLLLL-DEPLSALDA 167 (353)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCH
Confidence 22221111111 123455667777766554 6888999999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+. .+.+.|..+..+ +.++.+.+|-...+..++|++..+
T Consensus 168 ~~r~-~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl 208 (353)
T TIGR03265 168 RVRE-HLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVM 208 (353)
T ss_pred HHHH-HHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 9874 455777776543 333344444444455567776553
No 89
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.3e-23 Score=218.98 Aligned_cols=173 Identities=22% Similarity=0.216 Sum_probs=130.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhhc---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRL--- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~l--- 469 (591)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+.++ .++|+++|...+...+
T Consensus 19 ~~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 19 NTVIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 458999999999999 9999999999999999999999999999999999876 3599999976544333
Q ss_pred ---ccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 470 ---QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 470 ---~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
..++...+... +....+.++++.+++.++ +..+..+||||+||++|+|+|+ .+|+++|| |||+++||+.
T Consensus 97 eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~-----~~P~lLLL-DEP~s~LD~~ 170 (351)
T PRK11432 97 ENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI-----LKPKVLLF-DEPLSNLDAN 170 (351)
T ss_pred HHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCcccCCHH
Confidence 22221111111 122455666776666554 6788999999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccceEEEec----cccccCCcEEEE
Q 007747 545 DQLSKFNQKLADLSSSPNPQLIDGILLT----KFDTIDDKHYQW 584 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlT----K~D~i~d~vGal 584 (591)
.+. .+...|+.+... .+++.+++| .+-.++|++..+
T Consensus 171 ~r~-~l~~~l~~l~~~---~g~tii~vTHd~~e~~~laD~i~vm 210 (351)
T PRK11432 171 LRR-SMREKIRELQQQ---FNITSLYVTHDQSEAFAVSDTVIVM 210 (351)
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 875 455677776543 234445554 444557777554
No 90
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.89 E-value=1.5e-22 Score=218.82 Aligned_cols=221 Identities=22% Similarity=0.245 Sum_probs=160.2
Q ss_pred hchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccccccc
Q 007747 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQ 412 (591)
Q Consensus 333 ~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~ 412 (591)
....|....+.+.|++.||+++++.+|++.+....... .....++..+.+.|..+..+ . .+..
T Consensus 128 ~~~~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~----~-------~~~~ 190 (420)
T PRK14721 128 SQRDPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRDFE------QSLKKTISLLTLNLRTIGGD----E-------IIEQ 190 (420)
T ss_pred cccCcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHhcCCc----c-------ccCC
Confidence 44456668899999999999999999999987643211 12233444444444321110 1 1235
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhhhhcC--CcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHH
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~--~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al 490 (591)
|+ +++||||||||||||+++||+.+... ..+|.+...|+||+|+++|+..+++.++++++... ++... ..++
T Consensus 191 g~--vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~---~~~dl-~~al 264 (420)
T PRK14721 191 GG--VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIK---DIADL-QLML 264 (420)
T ss_pred Cc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCC---CHHHH-HHHH
Confidence 66 99999999999999999999865322 34788999999999999999999999999986432 22222 2222
Q ss_pred HHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEE
Q 007747 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (591)
Q Consensus 491 ~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (591)
..+.+++.+++||+|+.++...++..|..|.....|..++||..++++.+...+ ++..+ ...+++++|
T Consensus 265 --~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~------~~~~f----~~~~~~~~I 332 (420)
T PRK14721 265 --HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE------VISAY----QGHGIHGCI 332 (420)
T ss_pred --HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH------HHHHh----cCCCCCEEE
Confidence 245678999999999999888899999988776778778787888876544332 22222 356899999
Q ss_pred eccccccCCcEEE-EEeccc
Q 007747 571 LTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 571 lTK~D~i~d~vGa-ls~~~~ 589 (591)
+||+|+. .++|. |+++++
T Consensus 333 ~TKlDEt-~~~G~~l~~~~~ 351 (420)
T PRK14721 333 ITKVDEA-ASLGIALDAVIR 351 (420)
T ss_pred EEeeeCC-CCccHHHHHHHH
Confidence 9999995 67787 888765
No 91
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=5.8e-23 Score=219.44 Aligned_cols=176 Identities=20% Similarity=0.183 Sum_probs=132.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCC--cEEEEccccc-------ceeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK--VSVMMAACDT-------FRSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~--G~V~i~~~Dt-------~RigaveQl~~~~~~l- 469 (591)
..+|++++|++.+|+ +++|+|||||||||||++|||++.|+. |+|.+.|.++ .++|+++|...+...+
T Consensus 18 ~~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 18 NTVLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred eEEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 468999999999999 999999999999999999999999999 9999999875 3499999976543333
Q ss_pred -----ccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 470 -----QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 470 -----~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
..++....... .....+.++++.+++.++ +..+..+||||+||++|+|+|+ .+|+++|| ||||+|||
T Consensus 96 v~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~-----~~P~llLL-DEP~s~LD 169 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA-----IEPDVLLL-DEPLSALD 169 (362)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCccccCC
Confidence 22221111111 112345566776666554 7888999999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcC--CCCccceEEEeccccccCCcEEEE
Q 007747 543 AVDQLSKFNQKLADLSSS--PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~--~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+..+. .+.+.|..+... +.++.+.+|-...+..++|++..+
T Consensus 170 ~~~r~-~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl 212 (362)
T TIGR03258 170 ANIRA-NMREEIAALHEELPELTILCVTHDQDDALTLADKAGIM 212 (362)
T ss_pred HHHHH-HHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99874 455777777654 233444444444555667777654
No 92
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.2e-23 Score=221.64 Aligned_cols=178 Identities=20% Similarity=0.199 Sum_probs=132.8
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRT 464 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~~ 464 (591)
....+|+++||++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.+.++. ++|+++|...
T Consensus 39 ~~~~~L~~isl~i~~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 34568999999999999 99999999999999999999999999999999987741 4899999754
Q ss_pred hhh------hcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 465 HAR------RLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 465 ~~~------~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
+.. ++.+.....+... .....+.++++.+++..+ +..+..+||||+||+.|||+|+ .+|+++|| ||
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~-----~~P~iLLL-DE 190 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALA-----INPDILLM-DE 190 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-EC
Confidence 333 2222211111111 112345566666666543 6778899999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhc-CCCCccceEEEeccccccCCcEEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSS-SPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~-~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+|||+..+. .+.+.|..+.. .+.++.+.+|-+..+..++|++..+
T Consensus 191 Pts~LD~~~r~-~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL 238 (400)
T PRK10070 191 AFSALDPLIRT-EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM 238 (400)
T ss_pred CCccCCHHHHH-HHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence 99999999874 45577777754 3445555555555555667776543
No 93
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.6e-23 Score=205.14 Aligned_cols=173 Identities=21% Similarity=0.172 Sum_probs=133.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ce-eeeecchhh------
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FR-SGAVEQLRT------ 464 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~R-igaveQl~~------ 464 (591)
.+|++|||++.+|+ +++|+|++||||||+.+.|+||.+|+.|+|.+.|... || +.+|+|.+.
T Consensus 21 ~~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 58999999999999 9999999999999999999999999999999999643 22 789999763
Q ss_pred --hhhhcccceeecCCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 465 --HARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 465 --~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
..+.+.-|+...+..+ ....+.++++.+++.. .+..+..+|||++||++|||||. .+|+++|+ ||||++
T Consensus 99 ~tv~~~l~Epl~~~~~~~-~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~-----~~PklLIl-DEptSa 171 (252)
T COG1124 99 RTVGRILSEPLRPHGLSK-SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI-----PEPKLLIL-DEPTSA 171 (252)
T ss_pred hhHHHHHhhhhccCCccH-HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc-----cCCCEEEe-cCchhh
Confidence 3444444554433332 2233666777666533 36888999999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCC-CCccceEEEeccccccCCcEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~D~i~d~vGa 583 (591)
||+..|...+ +.|.++.+.. -+..+-+|-+..++.+||++..
T Consensus 172 LD~siQa~Il-nlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 172 LDVSVQAQIL-NLLLELKKERGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred hcHHHHHHHH-HHHHHHHHhcCceEEEEeCcHHHHHHHhhheee
Confidence 9999998766 5666665542 2233334445567888888765
No 94
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.5e-23 Score=212.75 Aligned_cols=176 Identities=17% Similarity=0.159 Sum_probs=131.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchh---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--- 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~--- 463 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.|.++. ++|+++|..
T Consensus 20 ~~~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (290)
T PRK13634 20 RRALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97 (290)
T ss_pred ccceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhh
Confidence 358999999999999 99999999999999999999999999999999997641 489999964
Q ss_pred ----hhhhhcccceeecCCCC-CHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 464 ----THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 464 ----~~~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
+..+++.+.....+... .....+.++++.+++. . .+..+..+||||+|++.||++|+ .+|+++|| ||
T Consensus 98 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~-----~~P~llll-DE 171 (290)
T PRK13634 98 LFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA-----MEPEVLVL-DE 171 (290)
T ss_pred hhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-EC
Confidence 22222221111111111 1123456677777664 3 36778899999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+|||+..+. .+.+.|..+... +.++.+.+|-+..+..++|++..|
T Consensus 172 Pt~~LD~~~~~-~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l 219 (290)
T PRK13634 172 PTAGLDPKGRK-EMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM 219 (290)
T ss_pred CcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999975 455778887654 445555555555556667887654
No 95
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.8e-23 Score=212.11 Aligned_cols=176 Identities=18% Similarity=0.185 Sum_probs=130.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchh---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--- 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~--- 463 (591)
..+|++|+|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|..
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 20 HQAIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred cCceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 358999999999999 99999999999999999999999999999999987641 489999964
Q ss_pred ----hhhhhcccceeecCCCC-CHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 464 ----THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 464 ----~~~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
+..+++.+.....+... .....+.++++.+++. . .+..+.++||||+|++.|+++|+ .+|+++|| ||
T Consensus 98 l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~-----~~p~illl-DE 171 (286)
T PRK13646 98 LFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA-----MNPDIIVL-DE 171 (286)
T ss_pred cchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH-----hCCCEEEE-EC
Confidence 22333322111111111 1223455666666653 2 25678899999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+|||+..+. .+.+.|.++... +.++.+.+|-+..+..++|++..+
T Consensus 172 Pt~~LD~~~~~-~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l 219 (286)
T PRK13646 172 PTAGLDPQSKR-QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM 219 (286)
T ss_pred CcccCCHHHHH-HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999975 455778777643 444555555555555667877554
No 96
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.89 E-value=7.1e-23 Score=209.13 Aligned_cols=173 Identities=17% Similarity=0.104 Sum_probs=130.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----ceeeeecchhhhhhhccc----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHARRLQV---- 471 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----~RigaveQl~~~~~~l~v---- 471 (591)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.+. .++++++|...+...+.+
T Consensus 25 ~~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl 102 (257)
T PRK11247 25 RTVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNV 102 (257)
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHH
Confidence 468999999999999 9999999999999999999999999999999987664 248999997544332211
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
.+. .+ ......+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+. .+
T Consensus 103 ~~~--~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~-----~~p~lllL-DEPt~~LD~~~~~-~l 172 (257)
T PRK11247 103 GLG--LK-GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALI-----HRPGLLLL-DEPLGALDALTRI-EM 172 (257)
T ss_pred Hhc--cc-chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCCCCCHHHHH-HH
Confidence 111 01 1122345566666655433 6778899999999999999999 99999999 9999999999874 45
Q ss_pred HHHHHHhhc-CCCCccceEEEeccccccCCcEEEE
Q 007747 551 NQKLADLSS-SPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 551 ~~~L~~l~~-~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+.|..+.. .+.++.+.+|-+.-+..++|++..+
T Consensus 173 ~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l 207 (257)
T PRK11247 173 QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLI 207 (257)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 577777644 3445555666666666677877553
No 97
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.6e-23 Score=219.65 Aligned_cols=176 Identities=19% Similarity=0.151 Sum_probs=131.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARR---- 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~---- 468 (591)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+.++. ++|+++|...+...
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 16 VVISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 458999999999999 99999999999999999999999999999999987752 48999997544333
Q ss_pred --cccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 469 --LQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 469 --l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
+...+...+... +....+.++++.+++..+ +..+..+||||+||+.|||+|+ .+|+++|| ||||+|||+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~-----~~P~lLLL-DEPts~LD~~ 167 (369)
T PRK11000 94 ENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-----AEPSVFLL-DEPLSNLDAA 167 (369)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHH
Confidence 222211111111 112345566666666543 6778899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 545 DQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+. .+.+.|.++... +.++.+.+|-...+..++|++..+
T Consensus 168 ~~~-~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl 207 (369)
T PRK11000 168 LRV-QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL 207 (369)
T ss_pred HHH-HHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 874 454677777553 444455555555566677877654
No 98
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.89 E-value=9e-23 Score=202.95 Aligned_cols=175 Identities=19% Similarity=0.127 Sum_probs=127.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhh--hh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--HA 466 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~--~~ 466 (591)
.+|++++|++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.+.++. ++|+++|... +.
T Consensus 19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 58999999999999 99999999999999999999999999999999887641 3889998762 22
Q ss_pred hhc------ccceeecCCCCCHH--HH-HHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 467 RRL------QVPIFEKGYEKDPA--IV-AKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 467 ~~l------~v~l~~~~~~~d~~--~~-a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
..+ .............. .. +.++++.+.+. . .+..+..+||||+|++.|+++|+ .+|+++|| |
T Consensus 97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-D 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA-----LNPKLLIA-D 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh-----cCCCEEEe-c
Confidence 212 11111111111111 11 12455555442 2 35677889999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+ ..+.+.|..+... +.++.+.+|-+.-+..++|++..|
T Consensus 171 EPt~~LD~~~~-~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 219 (228)
T cd03257 171 EPTSALDVSVQ-AQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM 219 (228)
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 99999999987 4555888887654 455666666666566667776543
No 99
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.89 E-value=1.6e-22 Score=203.51 Aligned_cols=180 Identities=19% Similarity=0.228 Sum_probs=130.6
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc--------ceeeeec-chhhhh
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVE-QLRTHA 466 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt--------~Rigave-Ql~~~~ 466 (591)
++....+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.+. .++++++ |...+.
T Consensus 30 ~~~~~~il~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 30 KYREVEALKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred ccCCeeeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 4455679999999999999 9999999999999999999999999999999988764 1478886 432222
Q ss_pred hhc----ccceeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 RRL----QVPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 ~~l----~v~l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
..+ ++.+....++... ...+..+++.+.+.. .+..+.++||||+|++.|+++|+ .+|+++|| ||||
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt 181 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALL-----HEPEILFL-DEPT 181 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCC
Confidence 211 1111111111122 223344555544433 36678899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+. .+.+.|..+... +.++.+.+|-..-+..++|++..+
T Consensus 182 ~~LD~~~~~-~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 227 (236)
T cd03267 182 IGLDVVAQE-NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI 227 (236)
T ss_pred CCCCHHHHH-HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999974 555788877653 455666666666667777776553
No 100
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=8.5e-23 Score=204.35 Aligned_cols=175 Identities=19% Similarity=0.134 Sum_probs=129.9
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhhhh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARR 468 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~~~ 468 (591)
.+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...
T Consensus 19 ~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 68999999999999 99999999999999999999999999999999987641 38899987644332
Q ss_pred cc----cceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 469 LQ----VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 469 l~----v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
+. +.+....++.. ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~lllL-DEP~~~ 170 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA-----NNPKVLLC-DEATSA 170 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCCCc
Confidence 21 11111111111 12344556666555433 5677889999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+..+. .|.+.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 171 LD~~~~~-~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 214 (233)
T cd03258 171 LDPETTQ-SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM 214 (233)
T ss_pred CCHHHHH-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999874 455788777654 455556666555666667766443
No 101
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.88 E-value=9.7e-23 Score=203.27 Aligned_cols=173 Identities=20% Similarity=0.185 Sum_probs=126.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchhhhhh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHAR 467 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~~~~~ 467 (591)
.+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.|.++ .++|+++|...+..
T Consensus 24 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 24 SILTGVELVVKRGE--TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 48999999999999 9999999999999999999999999999999988664 14889998754433
Q ss_pred h------cccceeecCCC-CCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 468 R------LQVPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 468 ~------l~v~l~~~~~~-~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
. +.......... ......+.++++.+.+... +..+..+|||++|++.|+++|+ .+|+++|| ||||+
T Consensus 102 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~-----~~p~llll-DEPt~ 175 (228)
T PRK10584 102 TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN-----GRPDVLFA-DEPTG 175 (228)
T ss_pred CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCC
Confidence 2 21111111111 1112344555666555432 5677899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|||+..+ ..+.+.|.++... +.++.+.+|-..-++. +|++..
T Consensus 176 ~LD~~~~-~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~ 218 (228)
T PRK10584 176 NLDRQTG-DKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLR 218 (228)
T ss_pred CCCHHHH-HHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEE
Confidence 9999987 4555788777543 4455555555555544 565543
No 102
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.6e-23 Score=205.12 Aligned_cols=176 Identities=20% Similarity=0.235 Sum_probs=130.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------ceeeeecchhhhhhhc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARRL 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~RigaveQl~~~~~~l 469 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++ .++++++|...+...+
T Consensus 16 ~~~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 16 RRVVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 468999999999999 9999999999999999999999999999999998764 2388999976433222
Q ss_pred c----cceeecCC-CCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 470 Q----VPIFEKGY-EKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 470 ~----v~l~~~~~-~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
. +.+..... ..+. ...+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~ 167 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA-----ANPKFILL-DEPFAG 167 (241)
T ss_pred cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccc
Confidence 1 11111111 1111 2334455555444332 5667889999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+..+. .+.+.+..+...+.++.+.+|-...+..++|++..+
T Consensus 168 LD~~~~~-~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l 210 (241)
T PRK10895 168 VDPISVI-DIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIV 210 (241)
T ss_pred CCHHHHH-HHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 9999874 455778777765555666666666666677776543
No 103
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.88 E-value=1.3e-22 Score=199.12 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=119.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~- 470 (591)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 13 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGE--ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 458999999999999 99999999999999999999999999999999987752 4788888643322221
Q ss_pred ---cceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 471 ---VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 471 ---v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+.++... .....+.++++.+++..+ +..+..+||||+|++.++++|+ .+|+++|| ||||+|||+..+
T Consensus 91 ~e~l~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEPt~~LD~~~~ 161 (201)
T cd03231 91 LENLRFWHAD---HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLL-----SGRPLWIL-DEPTTALDKAGV 161 (201)
T ss_pred HHHHHhhccc---ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCCCCCHHHH
Confidence 1111111 122345566666665443 5678899999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
..+.+.|..+... +.+.+++|.
T Consensus 162 -~~l~~~l~~~~~~----g~tiii~sH 183 (201)
T cd03231 162 -ARFAEAMAGHCAR----GGMVVLTTH 183 (201)
T ss_pred -HHHHHHHHHHHhC----CCEEEEEec
Confidence 4555777776554 334555555
No 104
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=9.6e-23 Score=213.15 Aligned_cols=173 Identities=17% Similarity=0.183 Sum_probs=130.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------------------------
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------------------------- 453 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt--------------------------- 453 (591)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.+.
T Consensus 21 ~~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (305)
T PRK13651 21 KALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIK 98 (305)
T ss_pred cceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccc
Confidence 58999999999999 9999999999999999999999999999999975431
Q ss_pred ------ceeeeecchh-------hhhhhcccceeecCCCCCH---HHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHH
Q 007747 454 ------FRSGAVEQLR-------THARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPL 515 (591)
Q Consensus 454 ------~RigaveQl~-------~~~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~L 515 (591)
.++|+++|.. +..+++.+.... ++... ...+.++++.+++. . .+..+.++||||+|++.|
T Consensus 99 ~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrval 176 (305)
T PRK13651 99 KIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS--MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176 (305)
T ss_pred hHHHHHhceEEEeeCcccccccccHHHHHHhhHHH--cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 1389999963 222222222111 12222 23456667766664 3 367889999999999999
Q ss_pred HHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 516 MRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 516 araL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|++|+ .+|+++|| ||||+|||+..+. .+.+.|..+...+.++.+.+|-+..+..++|++..+
T Consensus 177 A~aL~-----~~P~lLlL-DEPt~~LD~~~~~-~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 177 AGILA-----MEPDFLVF-DEPTAGLDPQGVK-EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred HHHHH-----hCCCEEEE-eCCCCCCCHHHHH-HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 99999 99999999 9999999999874 555788887755555555556666666678877543
No 105
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.88 E-value=1.9e-22 Score=202.49 Aligned_cols=175 Identities=21% Similarity=0.202 Sum_probs=127.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc--------ceeeeecchhhhhhhcc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt--------~RigaveQl~~~~~~l~- 470 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++ .++++++|...+...+.
T Consensus 14 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 14 RRALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 458999999999999 9999999999999999999999999999999998765 24889998754322221
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 471 ---v~l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+.+....++... ...+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEP~~~LD~ 165 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALL-----HRPALLLL-DEPTVGLDP 165 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccCCCH
Confidence 111111111111 223444555554433 35778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhc-CCCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSS-SPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~-~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+. .+.+.|..+.. .+.++.+.+|-+.-+.. +|++..+
T Consensus 166 ~~~~-~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l 205 (236)
T TIGR03864 166 ASRA-AIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVL 205 (236)
T ss_pred HHHH-HHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEE
Confidence 9975 45577877764 34455555555556654 6665443
No 106
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.1e-23 Score=203.86 Aligned_cols=178 Identities=21% Similarity=0.244 Sum_probs=134.5
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------e----eeeecchhhhh
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------R----SGAVEQLRTHA 466 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------R----igaveQl~~~~ 466 (591)
++...+++++||.+++|+ +++|+|||||||||++.++.|+..|+.|+|.+.+.|+. | +||.+|.....
T Consensus 14 y~kr~Vv~~Vsl~v~~GE--iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGE--IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hCCeeeeeeeeEEEcCCc--EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 345678899999999999 99999999999999999999999999999999999982 2 89999998877
Q ss_pred hhcccc----eeecCCCCCH-----HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 467 RRLQVP----IFEKGYEKDP-----AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 467 ~~l~v~----l~~~~~~~d~-----~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
+.|.|. .......++. ...+.+.++.+..... +..-..+|||+++|+.|||+|+ .+|..+|| ||
T Consensus 92 r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa-----~~P~fiLL-DE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA-----ANPKFILL-DE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh-----cCCCEEEe-cC
Confidence 776432 1111111121 1223345555555444 5666789999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|++|.||... ...++++..+...+-.+.||-|-+-..=.+||+.-.
T Consensus 166 PFAGVDPiaV-~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYI 211 (243)
T COG1137 166 PFAGVDPIAV-IDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYI 211 (243)
T ss_pred CccCCCchhH-HHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEE
Confidence 9999999986 456688888887755555555555444445555433
No 107
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.2e-22 Score=200.28 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=127.4
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhh------hccc
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHAR------RLQV 471 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~------~l~v 471 (591)
+++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+.. ++.+
T Consensus 16 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGE--ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 8999999999 99999999999999999999999999999999987752 4899999764332 2222
Q ss_pred ceeecCC-CCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 472 PIFEKGY-EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 472 ~l~~~~~-~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
....... .......+.++++.+++.. .+..+..+||||+|++.++++|+ .+|+++|| ||||+|||+..+. .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~-----~~p~llll-DEP~~~LD~~~~~-~ 166 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLV-----RDKPVLLL-DEPFAALDPALRA-E 166 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHHHHH-H
Confidence 2111100 1112334556666665543 25677889999999999999999 99999999 9999999999974 4
Q ss_pred HHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 550 FNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 550 f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.+.|..+... +.++.+.+|.+..+..++|++..+
T Consensus 167 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 202 (211)
T cd03298 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL 202 (211)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEE
Confidence 55777777543 445555556666666677777553
No 108
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=1.1e-22 Score=204.68 Aligned_cols=175 Identities=18% Similarity=0.154 Sum_probs=130.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-----------eeeeecchhhhhh-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTHAR- 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-----------RigaveQl~~~~~- 467 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|...+..
T Consensus 14 ~~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 14 TQVLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred eEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 458999999999999 99999999999999999999999999999999987652 3789998654322
Q ss_pred -----hcccceeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 468 -----RLQVPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 468 -----~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
++...... ..+... ...+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 92 ~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEP~ 164 (240)
T PRK09493 92 LTALENVMFGPLR-VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA-----VKPKLMLF-DEPT 164 (240)
T ss_pred CcHHHHHHhHHHH-hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-cCCc
Confidence 22111100 011111 233455566555433 26777889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|+|+..+. .+.+.|..+...+.++.+.+|-+.-+..++|++..+
T Consensus 165 ~~LD~~~~~-~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 165 SALDPELRH-EVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ccCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999874 555788887655556666666666666667776553
No 109
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.88 E-value=1.1e-22 Score=204.01 Aligned_cols=173 Identities=17% Similarity=0.160 Sum_probs=127.5
Q ss_pred ccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----eeeeecchhhhhh------hcccc
Q 007747 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RSGAVEQLRTHAR------RLQVP 472 (591)
Q Consensus 403 L~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----RigaveQl~~~~~------~l~v~ 472 (591)
|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. +.++++|...+.. ++...
T Consensus 1 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGE--FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 468999999999 99999999999999999999999999999999987753 3578888654322 22221
Q ss_pred eeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 473 IFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 473 l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
+.......+. ...+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~gLD~~~~~- 151 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALS-----IRPKVLLL-DEPFGALDALTRG- 151 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCCcCCCHHHHH-
Confidence 1100011111 223455666655543 26778899999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 549 KFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 549 ~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+.+.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 188 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 455777777653 455566666666666677877554
No 110
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.88 E-value=1.2e-22 Score=205.40 Aligned_cols=175 Identities=16% Similarity=0.136 Sum_probs=128.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----------------ceeeeecch
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------------FRSGAVEQL 462 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----------------~RigaveQl 462 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++ .++|+++|.
T Consensus 16 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 16 QTVLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 458999999999999 9999999999999999999999999999999987643 137899986
Q ss_pred hhhh------hhcccceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 463 RTHA------RRLQVPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 463 ~~~~------~~l~v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
..+. +++..... ...... ....+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|
T Consensus 94 ~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~-----~~p~lll 167 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPV-IVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA-----MRPEVIL 167 (250)
T ss_pred cccCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh-----cCCCEEE
Confidence 5332 22211110 001111 12334555665555432 5677899999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
| ||||+|||+..+. .+.+.|..+...+.++.+.+|-+.-+..++|++..+
T Consensus 168 L-DEPt~~LD~~~~~-~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l 217 (250)
T PRK11264 168 F-DEPTSALDPELVG-EVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM 217 (250)
T ss_pred E-eCCCccCCHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 9 9999999999874 455778777665555555556555566667776554
No 111
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.3e-22 Score=210.21 Aligned_cols=173 Identities=16% Similarity=0.198 Sum_probs=129.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchh--h-
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--T- 464 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~--~- 464 (591)
.+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.|.++. ++|+++|.. .
T Consensus 20 ~~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 20 RALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 58999999999999 99999999999999999999999999999999987641 489999964 2
Q ss_pred ----hhhhcccceeecCCCCCH---HHHHHHHHHHhhhc-CC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 465 ----HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 465 ----~~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~-~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
..+++.+. ...++... ...+.++++.+++. .+ +..+..+||||+|++.||++|+ .+|+++|| |
T Consensus 98 ~~~tv~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~-----~~p~illL-D 169 (288)
T PRK13643 98 FEETVLKDVAFG--PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA-----MEPEVLVL-D 169 (288)
T ss_pred ccchHHHHHHhH--HHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH-----hCCCEEEE-E
Confidence 22222211 11112122 23455666666653 23 6778899999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+. .+.+.|..+...+.++.+.+|-+..+..++|++..+
T Consensus 170 EPt~gLD~~~~~-~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l 217 (288)
T PRK13643 170 EPTAGLDPKARI-EMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL 217 (288)
T ss_pred CCccCCCHHHHH-HHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999874 455788887655445555555555555667777553
No 112
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.2e-22 Score=204.62 Aligned_cols=176 Identities=15% Similarity=0.178 Sum_probs=131.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhcc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l~ 470 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 14 ~~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 458999999999999 99999999999999999999999999999999987642 4789999754332221
Q ss_pred ----cceeecCCCCC---HHHHHHHHHHHhhhcC---CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 471 ----VPIFEKGYEKD---PAIVAKEAIQEATRNG---SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 471 ----v~l~~~~~~~d---~~~~a~~al~~~~~~~---~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
+.+.....+.+ ....+.++++.+++.. .+..+..+||||+|++.|+++|. .+|+++|| ||||+|
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~ 165 (242)
T cd03295 92 VEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA-----ADPPLLLM-DEPFGA 165 (242)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCccc
Confidence 11111111111 1234556666666552 36677899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|+..+ ..+.+.|..+... +.++.+.+|-+.-+..++|++..|
T Consensus 166 LD~~~~-~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l 209 (242)
T cd03295 166 LDPITR-DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIM 209 (242)
T ss_pred CCHHHH-HHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999886 4555778877653 455555666666666677776553
No 113
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.4e-22 Score=208.73 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=128.5
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchh--hh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLR--TH 465 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~--~~ 465 (591)
.+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++|+++|.. .+
T Consensus 21 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 21 RALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred ceeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 58999999999999 9999999999999999999999999999999988654 1389999974 12
Q ss_pred -----hhhcccceeecCCCCCH---HHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 466 -----ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 466 -----~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
.+++.+.. ..++... ...+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| |
T Consensus 99 ~~~tv~e~l~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-D 170 (280)
T PRK13649 99 FEETVLKDVAFGP--QNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA-----MEPKILVL-D 170 (280)
T ss_pred ccccHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-e
Confidence 22221111 1111112 223445566655542 36677899999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+ ..+.+.|..+...+.++.+.+|-+.-+..++|++..|
T Consensus 171 EPt~~LD~~~~-~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 218 (280)
T PRK13649 171 EPTAGLDPKGR-KELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVL 218 (280)
T ss_pred CCcccCCHHHH-HHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEE
Confidence 99999999987 4555778877654455555555555565667776554
No 114
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.88 E-value=7.6e-23 Score=210.03 Aligned_cols=226 Identities=21% Similarity=0.332 Sum_probs=167.8
Q ss_pred hhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccc
Q 007747 332 KADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE 411 (591)
Q Consensus 332 ~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~ 411 (591)
.++..+.+++++..|++.||+++++.++.+.....+.... + ....+...+.+.+...+.+. .++ ..
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~---~--~~~~vl~~v~~~l~~~~~~~---~~~------~~ 73 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---M--ITEEVIEYILEDMSSHFNTE---NVF------EK 73 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCC---c--cccHHHHHHhcccEEeeCCc---ccc------cC
Confidence 4677788899999999999999999999986643222111 0 01111111222222212111 011 11
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~ 491 (591)
++. +++|+||||+||||++.+|++.+...+.+|.+..+|.+|+|+++|++.+++.++++++.. .++... .++++
T Consensus 74 ~~~--~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~---~~~~~l-~~~l~ 147 (270)
T PRK06731 74 EVQ--TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAM-TRALT 147 (270)
T ss_pred CCC--EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec---CCHHHH-HHHHH
Confidence 445 999999999999999999999988778899999999999999999999999999988643 234333 45565
Q ss_pred Hhhh-cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC-CCCHHHHHHHHHHHHHHhhcCCCCccceEE
Q 007747 492 EATR-NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 492 ~~~~-~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~-GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (591)
.+.. .++|++++||+|+++++..++++|.++....+|+.++||..++. +.|..+++..|+ .+.++++
T Consensus 148 ~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~-----------~~~~~~~ 216 (270)
T PRK06731 148 YFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK-----------DIHIDGI 216 (270)
T ss_pred HHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC-----------CCCCCEE
Confidence 5543 46899999999999999999999999999999999888888875 567777765552 3689999
Q ss_pred EeccccccCCcEEE-EEeccc
Q 007747 570 LLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 570 IlTK~D~i~d~vGa-ls~~~~ 589 (591)
|+||+|+. .++|. ||++++
T Consensus 217 I~TKlDet-~~~G~~l~~~~~ 236 (270)
T PRK06731 217 VFTKFDET-ASSGELLKIPAV 236 (270)
T ss_pred EEEeecCC-CCccHHHHHHHH
Confidence 99999996 57888 888764
No 115
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.3e-22 Score=209.05 Aligned_cols=173 Identities=17% Similarity=0.163 Sum_probs=130.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhh-------
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT------- 464 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~------- 464 (591)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|++.|+.|+|.+.|.++. ++|+++|...
T Consensus 18 ~~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 18 EALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred ceeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 48999999999999 99999999999999999999999999999999987652 3899998642
Q ss_pred hhhhcccceeecCCCCCHH---HHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 465 HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 465 ~~~~l~v~l~~~~~~~d~~---~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
..+++.... ...+.+.. ..+.++++.+.+.. .+..+.++||||+|++.|+++|+ .+|+++|| ||||+|
T Consensus 96 v~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~-----~~p~llil-DEPt~g 167 (277)
T PRK13652 96 VEQDIAFGP--INLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA-----MEPQVLVL-DEPTAG 167 (277)
T ss_pred HHHHHHhHH--HHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccc
Confidence 122222111 11112222 23455666655543 36778899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+..+ ..|.+.|..+... +.++.+.+|-+.-+..++|++..|
T Consensus 168 LD~~~~-~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l 211 (277)
T PRK13652 168 LDPQGV-KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM 211 (277)
T ss_pred CCHHHH-HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999987 4566888887654 455555666666666667877554
No 116
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.88 E-value=1.2e-22 Score=202.19 Aligned_cols=175 Identities=14% Similarity=0.158 Sum_probs=131.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----ceeeeecchhhhhhhcc----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQ---- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----~RigaveQl~~~~~~l~---- 470 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++ .++++++|...+...+.
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~ 90 (223)
T TIGR03740 13 QTAVNNISLTVPKNS--VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTAREN 90 (223)
T ss_pred EEEEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHH
Confidence 458999999999999 9999999999999999999999999999999988764 35889988654322221
Q ss_pred cceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 471 VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 471 v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
+.++...++.+ ...+.++++.+++... +..+.++|||++|++.|+++|+ .+|+++|| ||||+|+|+..+ ..
T Consensus 91 ~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~-----~~p~llll-DEP~~~LD~~~~-~~ 162 (223)
T TIGR03740 91 LKVHTTLLGLP-DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL-----NHPKLLIL-DEPTNGLDPIGI-QE 162 (223)
T ss_pred HHHHHHHcCCC-HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHh-----cCCCEEEE-CCCccCCCHHHH-HH
Confidence 11111111212 2344556666655443 6778899999999999999999 99999999 999999999987 55
Q ss_pred HHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|.+.|.++...+.++.+.+|-..-+..++|++..+
T Consensus 163 l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 197 (223)
T TIGR03740 163 LRELIRSFPEQGITVILSSHILSEVQQLADHIGII 197 (223)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 66888888655455555555555566667777553
No 117
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1.2e-22 Score=200.84 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=125.0
Q ss_pred CCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhh
Q 007747 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRT 464 (591)
Q Consensus 395 ~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~ 464 (591)
..+....+|++|+|+++.|+ +++|+|+|||||||||+.|+|+.++..|+|.+.|.|+- .+++|+|-+.
T Consensus 11 ~~YG~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~ 88 (237)
T COG0410 11 AGYGKIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR 88 (237)
T ss_pred ecccceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc
Confidence 34566889999999999999 99999999999999999999999999999999999983 2899999875
Q ss_pred hh------hhcccceeecCCCCCHHHHHHHHHHHhh-h-cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 465 HA------RRLQVPIFEKGYEKDPAIVAKEAIQEAT-R-NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 465 ~~------~~l~v~l~~~~~~~d~~~~a~~al~~~~-~-~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
.. +||.+..+.............++.+++- + +..+..--++|||+||.++++|||+ .+|+++|| ||
T Consensus 89 iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm-----~~PklLLL-DE 162 (237)
T COG0410 89 IFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM-----SRPKLLLL-DE 162 (237)
T ss_pred chhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh-----cCCCEEEe-cC
Confidence 54 4444433322110111111233444432 1 2235667889999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEe
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 571 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIl 571 (591)
|+.||-|.-..+.| ++++++.... +++++++
T Consensus 163 Ps~GLaP~iv~~I~-~~i~~l~~~~---g~tIlLV 193 (237)
T COG0410 163 PSEGLAPKIVEEIF-EAIKELRKEG---GMTILLV 193 (237)
T ss_pred CccCcCHHHHHHHH-HHHHHHHHcC---CcEEEEE
Confidence 99999998877777 7888887542 3454444
No 118
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.3e-22 Score=209.68 Aligned_cols=176 Identities=14% Similarity=0.107 Sum_probs=131.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----------ceeeeecchhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT---- 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----------~RigaveQl~~---- 464 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.|.++ .++|+++|...
T Consensus 19 ~~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 19 THALKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred CeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 458999999999999 9999999999999999999999999999999999775 14899999652
Q ss_pred ---hhhhcccceeecCCCCC-HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 465 ---HARRLQVPIFEKGYEKD-PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 465 ---~~~~l~v~l~~~~~~~d-~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
..+++.......+.... ....+.++++.+++..+ +..+.++||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~-----~~p~lLil-DEPt~ 170 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV-----MEPKVLVL-DEPTA 170 (283)
T ss_pred cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 12222111111111111 12344556666665443 6788899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .|.+.|..+... +.++.+.+|-++-+..++|++..+
T Consensus 171 gLD~~~~~-~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 171 GLDPMGVS-EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred CCCHHHHH-HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999874 455778777654 456666666666666667877544
No 119
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.88 E-value=3.8e-22 Score=217.12 Aligned_cols=224 Identities=30% Similarity=0.380 Sum_probs=168.2
Q ss_pred ChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccccc
Q 007747 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAK 410 (591)
Q Consensus 331 ~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i 410 (591)
.....++.+..+++.|++.||+++++.+|++.+.....+... .+..++.+.|.+++..... .+ +
T Consensus 155 ~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~-------~~-~ 218 (424)
T PRK05703 155 QVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVE-------DI-L 218 (424)
T ss_pred ccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccc-------cc-c
Confidence 456788999999999999999999999999999876432210 3567788888888754321 11 2
Q ss_pred ccCCceEEEEEccCCCcHHHHHHHHHhhhh--cCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHH
Q 007747 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 488 (591)
Q Consensus 411 ~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~--~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~ 488 (591)
..|+ +++|+||+||||||++.+||+.+. ..+.+|.++++|+||+|+++|++.+++.+++|++.... +.. ...
T Consensus 219 ~~~~--~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~---~~~-l~~ 292 (424)
T PRK05703 219 KQGG--VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD---PKE-LAK 292 (424)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC---HHh-HHH
Confidence 3566 999999999999999999998876 34569999999999999999999999999999865322 222 223
Q ss_pred HHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchh-cCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccce
Q 007747 489 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY-LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567 (591)
Q Consensus 489 al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~-~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it 567 (591)
++.. ..++|+++|||+|+.+.....+..|.+++. ...|..++||..++.+..... +++..+ ....++
T Consensus 293 ~l~~--~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~------~~~~~f----~~~~~~ 360 (424)
T PRK05703 293 ALEQ--LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK------DIYKHF----SRLPLD 360 (424)
T ss_pred HHHH--hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH------HHHHHh----CCCCCC
Confidence 3332 346899999999999888888888888877 446767677777777653332 222222 345789
Q ss_pred EEEeccccccCCcEEE-EEeccc
Q 007747 568 GILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 568 ~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
++|+||+|+. ..+|. ++++++
T Consensus 361 ~vI~TKlDet-~~~G~i~~~~~~ 382 (424)
T PRK05703 361 GLIFTKLDET-SSLGSILSLLIE 382 (424)
T ss_pred EEEEeccccc-ccccHHHHHHHH
Confidence 9999999995 66777 887654
No 120
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.88 E-value=1.3e-22 Score=208.12 Aligned_cols=175 Identities=18% Similarity=0.260 Sum_probs=129.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhh-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHA- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~- 466 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 20 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 20 RCIFDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 458999999999999 99999999999999999999999999999999986541 388999875432
Q ss_pred -----hhcccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 467 -----RRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 467 -----~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
+++.+.+... ...+. ...+.++++.+++... +..+..+||||+|++.||++|+ .+|+++|| |||
T Consensus 98 ~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL-DEP 170 (269)
T PRK11831 98 DMNVFDNVAYPLREH-TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA-----LEPDLIMF-DEP 170 (269)
T ss_pred CCCHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCC
Confidence 2222221110 01111 1234445565555433 5678899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+|||+..+. .+.+.|..+... +.++.+.+|-+..+..++|++..|
T Consensus 171 t~~LD~~~~~-~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 171 FVGQDPITMG-VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred CccCCHHHHH-HHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEE
Confidence 9999999874 455778777653 445555555555566667776543
No 121
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.6e-22 Score=208.57 Aligned_cols=173 Identities=15% Similarity=0.135 Sum_probs=130.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhh-h----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-H---- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~-~---- 465 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|... .
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 20 KYTLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred CeeeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 358999999999999 99999999999999999999999999999999997752 4899999752 1
Q ss_pred --hhhcccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 466 --ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 466 --~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
.+++.... ...+.+. ...+.++++.+++.++ +..+..+||||+|++.||++|+ .+|+++|| ||||+
T Consensus 98 tv~eni~~~~--~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~-----~~p~lLlL-DEPt~ 169 (279)
T PRK13650 98 TVEDDVAFGL--ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA-----MRPKIIIL-DEATS 169 (279)
T ss_pred cHHHHHHhhH--HhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCcc
Confidence 22222111 1112222 2345666776666543 6778899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .|.+.|.++... +.++.+.+|-+..+. .+|++..+
T Consensus 170 ~LD~~~~~-~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l 213 (279)
T PRK13650 170 MLDPEGRL-ELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVM 213 (279)
T ss_pred cCCHHHHH-HHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE
Confidence 99999874 455788887654 455555555555553 46766443
No 122
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.88 E-value=1.6e-22 Score=217.01 Aligned_cols=174 Identities=17% Similarity=0.166 Sum_probs=130.3
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhhc--
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRL-- 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~l-- 469 (591)
...+|++++|++.+|+ +++|+|||||||||||++|||++.|+.|+|.+.|.++ .++|+++|...+...+
T Consensus 26 ~~~~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 26 GKEVISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred CeEEEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 3468999999999999 9999999999999999999999999999999999876 2499999976544333
Q ss_pred ----ccceeecCCCCC-HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 ----QVPIFEKGYEKD-PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 ----~v~l~~~~~~~d-~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
..++...+.... ....+.++++.+++..+ +..+..+||||+||++|+|+|+ .+|+++|| |||+++||+
T Consensus 104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~-----~~P~llLL-DEP~s~LD~ 177 (375)
T PRK09452 104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV-----NKPKVLLL-DESLSALDY 177 (375)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCCcCCH
Confidence 222211111111 12345566666666554 6788899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGal 584 (591)
..+. .+.+.|..+... .+++.|++|. +-.++|++..+
T Consensus 178 ~~r~-~l~~~L~~l~~~---~g~tiI~vTHd~~ea~~laDri~vl 218 (375)
T PRK09452 178 KLRK-QMQNELKALQRK---LGITFVFVTHDQEEALTMSDRIVVM 218 (375)
T ss_pred HHHH-HHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9874 455777777653 2445555544 34457776553
No 123
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=208.15 Aligned_cols=173 Identities=17% Similarity=0.117 Sum_probs=128.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhh------
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT------ 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~------ 464 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.|.++. ++|+++|...
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 20 TYALKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred ccceeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 458999999999999 99999999999999999999999999999999998752 4899999652
Q ss_pred -hhhhcccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 465 -HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 465 -~~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
..+++.... ...+... ...+.++++.+++..+ +..+..+||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 98 tv~enl~~~~--~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-DEPt~ 169 (279)
T PRK13635 98 TVQDDVAFGL--ENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA-----LQPDIIIL-DEATS 169 (279)
T ss_pred cHHHHHhhhH--hhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 222222111 1111122 2334556665555443 5778899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .+.+.|..+... +.++.+.+|.+.-+.. +|++..|
T Consensus 170 gLD~~~~~-~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l 213 (279)
T PRK13635 170 MLDPRGRR-EVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVM 213 (279)
T ss_pred cCCHHHHH-HHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEE
Confidence 99999875 455778777654 4455555555555543 6665443
No 124
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1e-22 Score=201.71 Aligned_cols=154 Identities=20% Similarity=0.242 Sum_probs=122.6
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------------ceeeeecchhhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLRTH 465 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------------~RigaveQl~~~ 465 (591)
....+|++|+|.+++|+ +++||||+||||||||++|+|+..|+.|+|.+.+.++ .++|+++|-..+
T Consensus 15 ~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 45679999999999999 9999999999999999999999999999999999876 249999997765
Q ss_pred hhhcc----c--------ceee---cCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 466 ARRLQ----V--------PIFE---KGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 466 ~~~l~----v--------~l~~---~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
..++. | +.+. ....+.....+.+++++++..++ -...-.+|||+|||++|||+|+ .+|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~-----Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV-----QQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh-----cCCC
Confidence 55441 1 1111 12233445566677777665544 3556678999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
+||. |||+++|||......+ +.|+++..+
T Consensus 168 iILA-DEPvasLDp~~a~~Vm-~~l~~in~~ 196 (258)
T COG3638 168 IILA-DEPVASLDPESAKKVM-DILKDINQE 196 (258)
T ss_pred EEec-CCcccccChhhHHHHH-HHHHHHHHH
Confidence 9999 9999999999975544 778887654
No 125
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-22 Score=205.46 Aligned_cols=176 Identities=18% Similarity=0.148 Sum_probs=131.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+
T Consensus 15 ~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 15 RTLLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 458999999999999 99999999999999999999999999999999987642 37899987543
Q ss_pred -hhhcccceeecCCC-CCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcC------CCcEEEEEec
Q 007747 466 -ARRLQVPIFEKGYE-KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN------NPDLVLFVGE 536 (591)
Q Consensus 466 -~~~l~v~l~~~~~~-~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~------~PdlILLVDE 536 (591)
.+++.......... ......+.++++.+++.. .+..+..+|||++|++.|+++|+ . +|+++|| ||
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~-----~~~~~~~~p~lllL-DE 166 (258)
T PRK13548 93 VEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA-----QLWEPDGPPRWLLL-DE 166 (258)
T ss_pred HHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh-----cccccCCCCCEEEE-eC
Confidence 22221111111111 112234556666665543 36778899999999999999999 6 7899999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhh-cCCCCccceEEEeccccccCCcEEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLS-SSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~-~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+|||+..+ ..+.+.|.++. ..+.++.+.+|.+..+..++|++..+
T Consensus 167 Pt~~LD~~~~-~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 214 (258)
T PRK13548 167 PTSALDLAHQ-HHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL 214 (258)
T ss_pred CcccCCHHHH-HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEE
Confidence 9999999987 45557888876 44555666666666666677877554
No 126
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.1e-22 Score=207.29 Aligned_cols=175 Identities=17% Similarity=0.117 Sum_probs=130.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhh-hhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH-ARR 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~-~~~ 468 (591)
..+|++++|++.+|+ +++|+||||+||||||++|+|++.|+.|+|.+.+.++. ++|+++|.... ...
T Consensus 15 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 358999999999999 99999999999999999999999999999999987641 38899987531 111
Q ss_pred c----ccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 469 L----QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 469 l----~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
. ++.+....++.+. ...+.++++.+++..+ +..+..+||||+|++.|+++|+ .+|+++|| ||||+|
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-DEPt~g 166 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT-----MEPECLIF-DEVTSM 166 (274)
T ss_pred chHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccc
Confidence 1 1111111111122 2334555665555443 6778899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+..+. .+.+.|.++...+.++.+.+|-+.-+. .+|++..|
T Consensus 167 LD~~~~~-~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l 208 (274)
T PRK13644 167 LDPDSGI-AVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVM 208 (274)
T ss_pred CCHHHHH-HHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEE
Confidence 9999874 555788888765666666666666664 37776554
No 127
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.2e-22 Score=206.31 Aligned_cols=176 Identities=19% Similarity=0.166 Sum_probs=130.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARR-- 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~-- 468 (591)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+...
T Consensus 15 ~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 15 KRILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred EEEEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 468999999999999 99999999999999999999999999999999987641 38999987543222
Q ss_pred ----cccceee--cCCC---CCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 469 ----LQVPIFE--KGYE---KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 469 ----l~v~l~~--~~~~---~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
+...... ..+. ......+.++++.+++.. .+..+.++||||+|++.|+++|+ .+|+++|| ||||
T Consensus 93 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEP~ 166 (255)
T PRK11231 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA-----QDTPVVLL-DEPT 166 (255)
T ss_pred HHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCc
Confidence 2111100 0011 112234455666655543 36778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|+|+..+ ..+.+.|..+...+.++.+.+|-+.-+..++|++..+
T Consensus 167 ~~LD~~~~-~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 167 TYLDINHQ-VELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred ccCCHHHH-HHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 99999987 4555788777655555555666666666677776543
No 128
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.88 E-value=1.8e-22 Score=203.02 Aligned_cols=175 Identities=17% Similarity=0.151 Sum_probs=130.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR-- 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~-- 467 (591)
..+|++++|++.+|+ +++|+||||+||||||++|+|++.|+.|+|.+.+.++. ++++++|...+..
T Consensus 15 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 15 FKALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred eEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 468999999999999 99999999999999999999999999999999987641 3889998654332
Q ss_pred ----hcccceee------cCCCC---CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 468 ----RLQVPIFE------KGYEK---DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 468 ----~l~v~l~~------~~~~~---d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
++...... ..++. .....+.++++.+++... +..+..+|||++|++.|+++|+ .+|+++||
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~-----~~p~~lll 167 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM-----QDPKLLLL 167 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEe
Confidence 22211110 00011 122345556666555432 6778899999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+. .+.+.|..+.. ..++.+.+|-+..+..+||++..|
T Consensus 168 -DEPt~~LD~~~~~-~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l 215 (242)
T TIGR03411 168 -DEPVAGMTDEETE-KTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVL 215 (242)
T ss_pred -cCCccCCCHHHHH-HHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999974 55588888765 355566666666666677776553
No 129
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.88 E-value=2.1e-22 Score=216.23 Aligned_cols=178 Identities=18% Similarity=0.172 Sum_probs=131.0
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc----cc-------------ceeeee
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC----DT-------------FRSGAV 459 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~----Dt-------------~Rigav 459 (591)
.....+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|. |+ .++|++
T Consensus 34 ~g~~~~l~~vsf~i~~Ge--i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGE--ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 345678999999999999 99999999999999999999999999999999884 32 249999
Q ss_pred cchhhhhh------hcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 460 EQLRTHAR------RLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 460 eQl~~~~~------~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
+|...+.. ++.+.+...+... .....+.++++.+++..+ +..+.++||||+|++.|+|+|+ .+|+++
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa-----~~P~IL 186 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFA-----MDADIL 186 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 99764433 2222211111111 112445666776666543 6788899999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|| ||||+|||+..+.. +.+.|..+... +.++.+.+|-+..+-.++|++..
T Consensus 187 Ll-DEPts~LD~~~r~~-l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~v 237 (382)
T TIGR03415 187 LM-DEPFSALDPLIRTQ-LQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAI 237 (382)
T ss_pred EE-ECCCccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99 99999999999854 44667676553 34444444444445556776644
No 130
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-22 Score=207.41 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=127.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------eeeeecchhhh--------
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRTH-------- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------RigaveQl~~~-------- 465 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++++++|...+
T Consensus 20 ~~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~ 97 (272)
T PRK15056 20 HTALRDASFTVPGGS--IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLV 97 (272)
T ss_pred cEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcch
Confidence 458999999999999 99999999999999999999999999999999987752 48999987532
Q ss_pred hhhcccceee--cC---CCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 466 ARRLQVPIFE--KG---YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 466 ~~~l~v~l~~--~~---~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
.+++.+..+. .. ........+.++++.+++... +..+.++||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 98 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~-----~~p~llll-DEPt~ 171 (272)
T PRK15056 98 EDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA-----QQGQVILL-DEPFT 171 (272)
T ss_pred hhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCc
Confidence 1111111110 00 011122344556666655433 6778899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
|||+..+. .+.+.|..+...+.++.+.+|-+.-+..++|++
T Consensus 172 ~LD~~~~~-~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 172 GVDVKTEA-RIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred cCCHHHHH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 99999874 455888887655444444444444555667765
No 131
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.88 E-value=2.5e-22 Score=205.45 Aligned_cols=176 Identities=19% Similarity=0.159 Sum_probs=130.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhh--h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~--~ 465 (591)
..+|++++|++.+|+ +++|+||||+||||||++|+|++.|+.|+|.+.+.++. ++|+++|... +
T Consensus 24 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 24 APVLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred eEEeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 468999999999999 99999999999999999999999999999999987642 3899999752 2
Q ss_pred hhhc------ccceee-cCCCC-CHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 466 ARRL------QVPIFE-KGYEK-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 466 ~~~l------~v~l~~-~~~~~-d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
...+ ..++.. ..... .....+.++++.+++. . .+..+..+||||+|++.|+++|+ .+|+++|| |
T Consensus 102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~-----~~p~illL-D 175 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALA-----VKPKLIVL-D 175 (265)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 2211 111100 01111 1223455666666653 2 36678899999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+. .+.+.|..+... +.++.+.+|-+.-+..++|++..|
T Consensus 176 EPt~~LD~~~~~-~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l 224 (265)
T TIGR02769 176 EAVSNLDMVLQA-VILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVM 224 (265)
T ss_pred CCcccCCHHHHH-HHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEE
Confidence 999999999874 455778777654 455566666666666667776543
No 132
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=204.51 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=130.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR-- 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~-- 467 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++++++|...+..
T Consensus 18 ~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 18 LLAVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred EEEEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 468999999999999 99999999999999999999999999999999997752 2677888653322
Q ss_pred ----hccccee--------ecCC-----CC---CHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcC
Q 007747 468 ----RLQVPIF--------EKGY-----EK---DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (591)
Q Consensus 468 ----~l~v~l~--------~~~~-----~~---d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~ 526 (591)
++..... ...+ .. .....+.++++.+++.. .+..+..+||||+|++.|+++|+ .
T Consensus 96 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~ 170 (255)
T PRK11300 96 TVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMV-----T 170 (255)
T ss_pred cHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHh-----c
Confidence 2221110 0000 00 11123445555555433 36778899999999999999999 9
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 527 ~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|+++|| ||||+|||+..+. .+.+.|..+.+. +.++.+.+|-+..+..++|++..|
T Consensus 171 ~p~llll-DEPt~~LD~~~~~-~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 227 (255)
T PRK11300 171 QPEILML-DEPAAGLNPKETK-ELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227 (255)
T ss_pred CCCEEEE-cCCccCCCHHHHH-HHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999 9999999999874 455777777654 456666667666666667877554
No 133
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.88 E-value=2e-22 Score=203.64 Aligned_cols=175 Identities=18% Similarity=0.223 Sum_probs=129.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-----CcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-----~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..++++++|++.+|+ +++|+|+||||||||++.|+|++.|+ .|+|.+.|.++. ++|+++|..
T Consensus 14 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 91 (247)
T TIGR00972 14 KEALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP 91 (247)
T ss_pred eeeecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCc
Confidence 358999999999999 99999999999999999999999988 999999887642 388999875
Q ss_pred hhh-----hhcccceeecC-CC-CCHHHHHHHHHHHhhhc----C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 THA-----RRLQVPIFEKG-YE-KDPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~-~~-~d~~~~a~~al~~~~~~----~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+. +++.+.....+ .. ......+.++++.+++. . .+..+..+||||+|++.|+++|+ .+|+++
T Consensus 92 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~ll 166 (247)
T TIGR00972 92 NPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA-----VEPEVL 166 (247)
T ss_pred ccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 432 22222111111 01 11123445566666553 2 35667889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+.. +.+.|..+... .++.+.+|-+.-+..++|++..+
T Consensus 167 ll-DEPt~~LD~~~~~~-l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i~~l 216 (247)
T TIGR00972 167 LL-DEPTSALDPIATGK-IEELIQELKKK-YTIVIVTHNMQQAARISDRTAFF 216 (247)
T ss_pred EE-eCCcccCCHHHHHH-HHHHHHHHHhc-CeEEEEecCHHHHHHhCCEEEEE
Confidence 99 99999999998754 55788777653 45555666666666667777553
No 134
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.2e-22 Score=208.43 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=128.0
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc--------------ceeeeecchhh--
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------------FRSGAVEQLRT-- 464 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt--------------~RigaveQl~~-- 464 (591)
.+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++|+++|...
T Consensus 25 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 58999999999999 9999999999999999999999999999999988653 13899999642
Q ss_pred -----hhhhcccceeecCCCCC-HHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 465 -----HARRLQVPIFEKGYEKD-PAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 465 -----~~~~l~v~l~~~~~~~d-~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
..+++.+.....+.... ....+.++++.+++. + .+..+..+||||+|++.|+++|+ .+|+++|| ||
T Consensus 103 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~lLlL-DE 176 (289)
T PRK13645 103 LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIA-----MDGNTLVL-DE 176 (289)
T ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eC
Confidence 22222211110111111 112344556655552 2 35778899999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+|||+..+. .+.+.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 177 Pt~~LD~~~~~-~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l 224 (289)
T PRK13645 177 PTGGLDPKGEE-DFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM 224 (289)
T ss_pred CcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999874 555777777643 445555666666666677876543
No 135
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=203.15 Aligned_cols=176 Identities=18% Similarity=0.123 Sum_probs=127.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------------eeeeecchhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------------RSGAVEQLRT 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------------RigaveQl~~ 464 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.+++ ++++++|...
T Consensus 15 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 15 HQALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeeEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 458999999999999 99999999999999999999999999999999887641 4889998654
Q ss_pred hhhhccc----ce-eecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 465 HARRLQV----PI-FEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 465 ~~~~l~v----~l-~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
+...+.+ .+ .....+... ...+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| |
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llil-D 166 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM-----MEPQVLLF-D 166 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-c
Confidence 3322211 10 000111111 2334455555554432 5677889999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+. .+.+.|..+...+.++.+.+|-..-+..++|++..+
T Consensus 167 EPt~~LD~~~~~-~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 214 (242)
T PRK11124 167 EPTAALDPEITA-QIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM 214 (242)
T ss_pred CCCCcCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999998874 455778877654444444444444455556766543
No 136
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.88 E-value=2.6e-22 Score=200.56 Aligned_cols=176 Identities=18% Similarity=0.119 Sum_probs=126.5
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce----eeeecchhhhhhhcccc
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----SGAVEQLRTHARRLQVP 472 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R----igaveQl~~~~~~l~v~ 472 (591)
+....+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.+.+. .++.+. .+..+++...
T Consensus 32 ~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~-~tv~enl~~~ 108 (224)
T cd03220 32 VGEFWALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPE-LTGRENIYLN 108 (224)
T ss_pred cCCeEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCC-CcHHHHHHHH
Confidence 344679999999999999 999999999999999999999999999999999987642 122111 1223333221
Q ss_pred eeecCCCCCHH---HHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 473 IFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 473 l~~~~~~~d~~---~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
.. .++.... ..+.++++.+.+.. .+..+..+|||++|++.|+++|. .+|+++|| ||||+|||+..+.
T Consensus 109 ~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll-DEP~~gLD~~~~~- 179 (224)
T cd03220 109 GR--LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATA-----LEPDILLI-DEVLAVGDAAFQE- 179 (224)
T ss_pred HH--HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHHH-
Confidence 11 1111121 23445555555433 36778899999999999999999 99999999 9999999999875
Q ss_pred HHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 549 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+.+.|..+...+.++.+.+|-...+..++|++..+
T Consensus 180 ~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 215 (224)
T cd03220 180 KCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215 (224)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 455777777655445555555555666667776553
No 137
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.1e-22 Score=205.95 Aligned_cols=176 Identities=19% Similarity=0.220 Sum_probs=131.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----------ceeeeecchhh--h-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT--H- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----------~RigaveQl~~--~- 465 (591)
..++++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.+. .++|+++|... +
T Consensus 15 ~~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 358999999999999 9999999999999999999999999999999998764 13899999742 1
Q ss_pred ----hhhcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 466 ----ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 466 ----~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
.+++........... .....+.++++.+++.++ +..+.++||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 93 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~llll-DEPt~ 166 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA-----MKPEIIVL-DEPTS 166 (275)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCc
Confidence 222211110001111 112345566666666554 6778899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .+.+.|..+...+.++.+.+|-+.-+..+||++..+
T Consensus 167 gLD~~~~~-~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 167 GLDPMGAS-QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred CCCHHHHH-HHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999975 455778777655555555566656666667776554
No 138
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.88 E-value=3e-22 Score=195.93 Aligned_cols=160 Identities=15% Similarity=0.068 Sum_probs=119.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc--------ceeeeecchhhhhhhc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARRL-- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt--------~RigaveQl~~~~~~l-- 469 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++ .++++++|...+...+
T Consensus 13 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 13 RMLFEGLSFTLNAGE--ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred EEEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 468999999999999 9999999999999999999999999999999998774 2478888854322211
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
++.++....... ...+.++++.+++... +..+.++||||+|++.|+++|+ .+|+++|| ||||+|||+..+
T Consensus 91 ~~~l~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEPt~~LD~~~~ 163 (198)
T TIGR01189 91 LENLHFWAAIHGGA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWL-----SRAPLWIL-DEPTTALDKAGV 163 (198)
T ss_pred HHHHHHHHHHcCCc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCHHHH
Confidence 111111111112 2234556666555433 6778899999999999999999 99999999 999999999886
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
..+.+.|.++... +.+.+++|.
T Consensus 164 -~~l~~~l~~~~~~----~~tii~~sH 185 (198)
T TIGR01189 164 -ALLAGLLRAHLAR----GGIVLLTTH 185 (198)
T ss_pred -HHHHHHHHHHHhC----CCEEEEEEc
Confidence 5566788777544 334455554
No 139
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.3e-22 Score=200.70 Aligned_cols=175 Identities=18% Similarity=0.138 Sum_probs=128.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhhh-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARR- 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~~- 468 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|++|+|.+.|.++. ++++++|...+...
T Consensus 18 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 18 IQALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred ceeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 468999999999999 99999999999999999999999999999999987641 38899987543322
Q ss_pred -----cccceeecCCCCCHHHHHHHHHHHh-hhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 469 -----LQVPIFEKGYEKDPAIVAKEAIQEA-TRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 469 -----l~v~l~~~~~~~d~~~~a~~al~~~-~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
+....+... .......+.++++.+ .... .+..+..+||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 96 tv~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~illl-DEPt~~L 168 (237)
T PRK11614 96 TVEENLAMGGFFAE-RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM-----SQPRLLLL-DEPSLGL 168 (237)
T ss_pred cHHHHHHHhhhccC-hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHH-----hCCCEEEE-cCccccC
Confidence 211111000 111122334444444 2322 25567889999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+..+ ..+.+.|.++...+.++.+.+|-+..+..++|++..+
T Consensus 169 D~~~~-~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (237)
T PRK11614 169 APIII-QQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVL 210 (237)
T ss_pred CHHHH-HHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEE
Confidence 99987 4555788888765555556666666666777877554
No 140
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.87 E-value=2.2e-22 Score=206.15 Aligned_cols=176 Identities=16% Similarity=0.140 Sum_probs=129.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhh--hh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT--HA-- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~--~~-- 466 (591)
..+|++++|++.+|+ +++|+||||+||||||++|+|++.|+.|+|.+.+.++. ++|+++|... +.
T Consensus 26 ~~~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 103 (267)
T PRK15112 26 VEAVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPR 103 (267)
T ss_pred cceeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcc
Confidence 458999999999999 99999999999999999999999999999999987652 4899999653 11
Q ss_pred ----hhcccceeec-CCCC-CHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 ----RRLQVPIFEK-GYEK-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 ----~~l~v~l~~~-~~~~-d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
+++...+... .... .....+.++++.+++. . .+..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 104 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-DEPt 177 (267)
T PRK15112 104 QRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALI-----LRPKVIIA-DEAL 177 (267)
T ss_pred hhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHH-----hCCCEEEE-cCCc
Confidence 1221111110 1111 1123345566666552 2 24566789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+ ..+.+.|.++... +.++.+.+|-+.-+..++|++..|
T Consensus 178 ~~LD~~~~-~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 178 ASLDMSMR-SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ccCCHHHH-HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 99999886 4555778877653 455555556666666667776554
No 141
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=2.4e-22 Score=201.23 Aligned_cols=174 Identities=17% Similarity=0.156 Sum_probs=128.8
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc----CCcEEEEccccc-------ceeeeecchhh--hhhh
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDT-------FRSGAVEQLRT--HARR 468 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~----~~G~V~i~~~Dt-------~RigaveQl~~--~~~~ 468 (591)
++++++|++.+|+ +++|+||||+|||||+++|+|++.| +.|+|.+.|.++ .++|+++|... +...
T Consensus 1 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGE--VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcc
Confidence 4689999999999 9999999999999999999999998 899999999774 24899999763 2222
Q ss_pred ccc------ceeecCC-CCCHHHHHHHHHHHhhhcC----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 469 LQV------PIFEKGY-EKDPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 469 l~v------~l~~~~~-~~d~~~~a~~al~~~~~~~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
+.+ .....+. .......+.++++.+.+.. .+..+..+|||++|++.|+++|+ .+|+++|| |||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~vllL-DEP 152 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALL-----LEPPFLIA-DEP 152 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-cCC
Confidence 211 1100111 1111233555666665542 25677889999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+|+|+..+ ..+.+.|..+... +.++.+.+|-+..+..++|++..+
T Consensus 153 t~~LD~~~~-~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 199 (230)
T TIGR02770 153 TTDLDVVNQ-ARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVM 199 (230)
T ss_pred ccccCHHHH-HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999986 4555788877653 455666666666666667777554
No 142
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.4e-22 Score=200.76 Aligned_cols=173 Identities=17% Similarity=0.168 Sum_probs=131.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~---- 466 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. ++++++|...+.
T Consensus 16 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv 93 (241)
T PRK14250 16 KEILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTV 93 (241)
T ss_pred eeeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhH
Confidence 458999999999999 99999999999999999999999999999999997752 388999975432
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 467 -~~l~v~l~~~~~~~d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+++.+.. .... .....+.++++.+++. . .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 94 ~e~l~~~~--~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt~~LD~ 164 (241)
T PRK14250 94 KDNIEYGP--MLKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA-----NNPEVLLL-DEPTSALDP 164 (241)
T ss_pred HHHHhcch--hhcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCH
Confidence 2222111 1111 1223445556665553 2 25667789999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+. .+.+.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 165 ~~~~-~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l 205 (241)
T PRK14250 165 TSTE-IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFL 205 (241)
T ss_pred HHHH-HHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEE
Confidence 9874 455778777653 566666777777667777877543
No 143
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.7e-22 Score=205.15 Aligned_cols=176 Identities=14% Similarity=0.080 Sum_probs=129.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++++++|...+
T Consensus 24 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 24 RTLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 468999999999999 99999999999999999999999999999999987752 38999986432
Q ss_pred -hhhcccceeec-C----CCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 466 -ARRLQVPIFEK-G----YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 466 -~~~l~v~l~~~-~----~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
.+++....+.. . ........+.++++.+.+.. .+..+.++||||+|++.|+++|+ .+|+++|| ||||
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~lllL-DEPt 175 (265)
T PRK10575 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA-----QDSRCLLL-DEPT 175 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCc
Confidence 22222211100 0 01112234455666655543 36778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+. .+.+.|..+... +.++.+.+|-+..+..++|++..|
T Consensus 176 ~~LD~~~~~-~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l 221 (265)
T PRK10575 176 SALDIAHQV-DVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVAL 221 (265)
T ss_pred ccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999874 555788877653 445555555555555567776543
No 144
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.3e-22 Score=210.43 Aligned_cols=176 Identities=15% Similarity=0.183 Sum_probs=128.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------------------c
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------------------F 454 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------------------~ 454 (591)
..+|++++|++.+|+ +++|+|+||||||||+++|+|++.|+.|+|.+.|.++ .
T Consensus 39 ~~~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (320)
T PRK13631 39 LVALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116 (320)
T ss_pred ccceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHh
Confidence 358999999999999 9999999999999999999999999999999987442 1
Q ss_pred eeeeecchh-------hhhhhcccceeecCCCC-CHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchh
Q 007747 455 RSGAVEQLR-------THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIY 524 (591)
Q Consensus 455 RigaveQl~-------~~~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~ 524 (591)
++|+++|.. +..+++.+......... .....+.++++.+++. . .+..+..+|||++||+.|||+|+
T Consensus 117 ~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~---- 192 (320)
T PRK13631 117 RVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILA---- 192 (320)
T ss_pred cEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHH----
Confidence 388999964 12222211111111111 1223455566666553 2 35677899999999999999999
Q ss_pred cCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 525 ~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+|+++|| ||||+|||+..+.. +.+.|..+...+.++.+.+|-+.-+...+|++..|
T Consensus 193 -~~p~iLLL-DEPtsgLD~~~~~~-l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 193 -IQPEILIF-DEPTAGLDPKGEHE-MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred -cCCCEEEE-ECCccCCCHHHHHH-HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999 99999999999744 44777777655555555555555555567776553
No 145
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.4e-22 Score=198.09 Aligned_cols=173 Identities=16% Similarity=0.234 Sum_probs=125.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL-- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l-- 469 (591)
..++++++|++.+| +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|...+...+
T Consensus 13 ~~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 35899999999885 79999999999999999999999999999999987652 388999876433222
Q ss_pred ----ccceeecCCC-CCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 ----QVPIFEKGYE-KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 ----~v~l~~~~~~-~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
.+........ .+....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEPt~~LD~ 163 (211)
T cd03264 90 REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALV-----GDPSILIV-DEPTAGLDP 163 (211)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCH
Confidence 2111111111 112234455666655543 26778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
..+. .+.+.|..+... .++.+.+|-+.-+..++|++..
T Consensus 164 ~~~~-~l~~~l~~~~~~-~tii~vsH~~~~~~~~~d~i~~ 201 (211)
T cd03264 164 EERI-RFRNLLSELGED-RIVILSTHIVEDVESLCNQVAV 201 (211)
T ss_pred HHHH-HHHHHHHHHhCC-CEEEEEcCCHHHHHHhCCEEEE
Confidence 9875 455777777642 3333444444445556676644
No 146
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.87 E-value=2.9e-22 Score=203.88 Aligned_cols=174 Identities=21% Similarity=0.181 Sum_probs=128.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhc--ccceeecC
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--QVPIFEKG 477 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l--~v~l~~~~ 477 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+. .++++++|...+...+ .+.-+...
T Consensus 17 ~~vl~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~--~~i~~v~q~~~~~~~l~~~~~~~~~~ 92 (251)
T PRK09544 17 RRVLSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--LRIGYVPQKLYLDTTLPLTVNRFLRL 92 (251)
T ss_pred ceEEEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc--cCEEEeccccccccccChhHHHHHhc
Confidence 458999999999999 99999999999999999999999999999998763 3699999975433221 11100000
Q ss_pred CCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q 007747 478 YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (591)
Q Consensus 478 ~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~ 556 (591)
+.......+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+. .+.+.|..
T Consensus 93 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL-DEPt~~LD~~~~~-~l~~~L~~ 165 (251)
T PRK09544 93 RPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALL-----NRPQLLVL-DEPTQGVDVNGQV-ALYDLIDQ 165 (251)
T ss_pred cccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCHHHHH-HHHHHHHH
Confidence 111112334556666655443 6778899999999999999999 99999999 9999999999874 45577777
Q ss_pred hhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 557 LSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 557 l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+... +.++.+.+|-+..+..++|++..+
T Consensus 166 ~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 166 LRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 7654 455566666666666667776543
No 147
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.8e-22 Score=205.10 Aligned_cols=173 Identities=16% Similarity=0.160 Sum_probs=128.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhh--h--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRT--H-- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~--~-- 465 (591)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++.|+.|+|.+.+.++. ++|+++|... +
T Consensus 23 ~~vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (280)
T PRK13633 23 KLALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA 100 (280)
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc
Confidence 459999999999999 99999999999999999999999999999999986652 4899999652 1
Q ss_pred ---hhhcccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 466 ---ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 466 ---~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
.+++... ....+... ...+.++++.+++..+ +..+.++||||+|++.|+++|+ .+|+++|| ||||
T Consensus 101 ~~v~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt 172 (280)
T PRK13633 101 TIVEEDVAFG--PENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA-----MRPECIIF-DEPT 172 (280)
T ss_pred ccHHHHHHhh--HhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCc
Confidence 2222111 11111121 2345566666665443 6778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+. .+.+.|..+... +.++.+.+|-+.-+.. +|++..+
T Consensus 173 ~gLD~~~~~-~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l 217 (280)
T PRK13633 173 AMLDPSGRR-EVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVM 217 (280)
T ss_pred ccCCHHHHH-HHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEE
Confidence 999999975 455788887653 4455555555555544 6666543
No 148
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.87 E-value=3.4e-22 Score=198.83 Aligned_cols=174 Identities=17% Similarity=0.191 Sum_probs=125.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc--cc--cc-------------ceeeeecch
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--AC--DT-------------FRSGAVEQL 462 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~--~~--Dt-------------~RigaveQl 462 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+. +. +. .++|+++|.
T Consensus 21 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 468999999999999 999999999999999999999999999999997 32 32 138999997
Q ss_pred hhhhhhc------ccceeecCCCC-CHHHHHHHHHHHhhhcC-C-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 463 RTHARRL------QVPIFEKGYEK-DPAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 463 ~~~~~~l------~v~l~~~~~~~-d~~~~a~~al~~~~~~~-~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
..+...+ ...+...+... .....+.++++.+++.. + +..+.++|||++|++.|+++|. .+|+++||
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll 173 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFI-----ADYPILLL 173 (224)
T ss_pred cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 6433322 11111111111 11234455666665543 2 5677889999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vG 582 (591)
||||+|+|+..+. .+.+.|..+...+.++.+.+|-..-+..++|++.
T Consensus 174 -DEPt~~LD~~~~~-~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 174 -DEPTASLDAANRQ-VVVELIAEAKARGAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred -cCCcccCCHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeE
Confidence 9999999999874 5557887776544444444444444445566554
No 149
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.87 E-value=2.5e-22 Score=193.87 Aligned_cols=149 Identities=22% Similarity=0.214 Sum_probs=115.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce---------eeeecchhhhhhhcc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLRTHARRLQ 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R---------igaveQl~~~~~~l~ 470 (591)
..+|++++|.+.+|+ +++|+||||+||||++++|+|++.|+.|+|.+.+.++.+ +++++|
T Consensus 12 ~~~l~~~~~~i~~G~--~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGE--IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 358999999999999 999999999999999999999999999999999877532 333333
Q ss_pred cceeecCCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 471 VPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 471 v~l~~~~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
+++.+++.. .+..+..+|||++|++.|+|+|+ .+|+++|| ||||+|+|+..+ ..
T Consensus 81 ------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEP~~~LD~~~~-~~ 135 (180)
T cd03214 81 ------------------ALELLGLAHLADRPFNELSGGERQRVLLARALA-----QEPPILLL-DEPTSHLDIAHQ-IE 135 (180)
T ss_pred ------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCccCCCHHHH-HH
Confidence 233333322 24556789999999999999999 99999999 999999999886 45
Q ss_pred HHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 550 FNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 550 f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.+.|..+..+ +.++.+.+|-..-+..++|++..+
T Consensus 136 ~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 171 (180)
T cd03214 136 LLELLRRLARERGKTVVMVLHDLNLAARYADRVILL 171 (180)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 66788777654 344444555555555567776543
No 150
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.5e-22 Score=203.66 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=128.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhh------
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT------ 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~------ 464 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...
T Consensus 22 ~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 22 NNALKNVSFEINEGE--YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred ccceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 458999999999999 99999999999999999999999999999999987652 3899998752
Q ss_pred -hhhhcccceeecCCCCC-HHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 465 -HARRLQVPIFEKGYEKD-PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 465 -~~~~l~v~l~~~~~~~d-~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
..+++............ ....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~lllL-DEP~~gL 173 (271)
T PRK13632 100 TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA-----LNPEIIIF-DESTSML 173 (271)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccC
Confidence 12222211111111111 1223455566555543 36777899999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCC-CCccceEEEeccccccCCcEEEE
Q 007747 542 DAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+..+. .+.+.|..+.... .++.+.+|-+..+. .+|++..+
T Consensus 174 D~~~~~-~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l 215 (271)
T PRK13632 174 DPKGKR-EIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVF 215 (271)
T ss_pred CHHHHH-HHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEE
Confidence 999874 4557888876543 55566666666664 46766543
No 151
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.87 E-value=3e-22 Score=203.73 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=129.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------------------ceee
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------------------FRSG 457 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------------------~Rig 457 (591)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.+.++ .+++
T Consensus 18 ~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 18 HEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 468999999999999 9999999999999999999999999999999998654 1488
Q ss_pred eecchhhhhhhccc----ceee-cCCCCC---HHHHHHHHHHHhhhcCC--CcchhccchhHHHHHHHHHHHHhchhcCC
Q 007747 458 AVEQLRTHARRLQV----PIFE-KGYEKD---PAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (591)
Q Consensus 458 aveQl~~~~~~l~v----~l~~-~~~~~d---~~~~a~~al~~~~~~~~--d~vliDtSGg~~qr~~LaraL~kl~~~~~ 527 (591)
+++|...+...+.+ .+.. ..+... ....+.++++.+++... +..+..+|||++|++.|+++|+ .+
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~-----~~ 170 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA-----ME 170 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHh-----cC
Confidence 98887543322211 1100 011111 12334555666555432 4567789999999999999999 99
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 528 PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+++|| ||||+|||+..+. .+.+.|..+...+.++.+.+|-..-+..++|++..|
T Consensus 171 p~llll-DEPt~~LD~~~~~-~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l 225 (257)
T PRK10619 171 PEVLLF-DEPTSALDPELVG-EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 225 (257)
T ss_pred CCEEEE-eCCcccCCHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999 9999999999875 455777777655455555555555567677877654
No 152
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.6e-22 Score=202.94 Aligned_cols=176 Identities=19% Similarity=0.239 Sum_probs=128.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. |+.|+|.+.+.++. ++|+++|..
T Consensus 26 ~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 26 FEAVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 468999999999999 999999999999999999999987 58999999987642 489999865
Q ss_pred hh-----hhhcccceeecCCCCCHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 464 TH-----ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+ .+++.+..............+.++++.+.+. ..+..+..+||||+|++.|+++|+ .+|+++||
T Consensus 104 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~lllL 178 (269)
T PRK14259 104 NPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA-----IEPEVILM 178 (269)
T ss_pred ccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 32 2332221111111111223344555555432 135667889999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQWS 585 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGals 585 (591)
||||+|||+..+. .+.+.|.++.. ..++.+.+|-+.-+..++|++..|.
T Consensus 179 -DEPt~gLD~~~~~-~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 179 -DEPCSALDPISTL-KIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred -cCCCccCCHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 9999999999874 45577877754 3455555566666667788776543
No 153
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.8e-22 Score=200.34 Aligned_cols=175 Identities=18% Similarity=0.214 Sum_probs=127.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++. |+.|+|.+.+.++. ++|+++|..
T Consensus 19 ~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 19 FQALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 358999999999999 999999999999999999999864 57999999987641 389999875
Q ss_pred hh-----hhhcccceeecCCCC--CHHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGYEK--DPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~--d~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++.+.+...+... .....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++
T Consensus 97 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p~ll 171 (253)
T PRK14242 97 NPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA-----VEPEVL 171 (253)
T ss_pred CCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 233222111111111 11233445555544321 24567889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.. +.++.+.+|-+.-+..++|++..|
T Consensus 172 ll-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 172 LM-DEPASALDPIATQ-KIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred EE-eCCcccCCHHHHH-HHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEE
Confidence 99 9999999999874 45578888754 455566666666777778887554
No 154
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=4.8e-22 Score=221.28 Aligned_cols=176 Identities=13% Similarity=0.088 Sum_probs=133.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARR 468 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~~ 468 (591)
...+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++. ++|+++|...+...
T Consensus 23 ~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 23 GVEVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred CceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 3468999999999999 99999999999999999999999999999999987641 38899997543332
Q ss_pred ccc----ceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 469 LQV----PIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 469 l~v----~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+.+ .+... ........+.++++.+++..+ +..+..+||||+||+.|+++|+ .+|+++|| ||||+|||+
T Consensus 101 ~tv~e~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~-----~~p~lllL-DEPt~~LD~ 173 (510)
T PRK15439 101 LSVKENILFGLP-KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLM-----RDSRILIL-DEPTASLTP 173 (510)
T ss_pred CcHHHHhhcccc-cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCCCCCCH
Confidence 211 11111 111223445566666666543 6778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+. .+.+.|..+...+.++.+.+|-+.-+..+||++..+
T Consensus 174 ~~~~-~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l 213 (510)
T PRK15439 174 AETE-RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVM 213 (510)
T ss_pred HHHH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9874 455778887665555555555555566778876554
No 155
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.87 E-value=5.5e-22 Score=196.21 Aligned_cols=174 Identities=15% Similarity=0.120 Sum_probs=126.7
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhh------hh
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHA------RR 468 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~------~~ 468 (591)
++.+++|++.+|+ +++|+||||+||||+++.|+|++.|+.|+|.+.+.++. ++|+++|...+. ++
T Consensus 13 ~~~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGE--IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3568999999999 99999999999999999999999999999999998752 388999975432 32
Q ss_pred cccceeecCC-CCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 469 LQVPIFEKGY-EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 469 l~v~l~~~~~-~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+...+..... .......+.++++.+++... +..+..+||||+|++.|+++|+ .+|+++|| ||||+|+|+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEPt~~LD~~~~ 164 (213)
T TIGR01277 91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLV-----RPNPILLL-DEPFSALDPLLR 164 (213)
T ss_pred HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCccCCHHHH
Confidence 2222211111 11122344556666655433 5677889999999999999999 99999999 999999999997
Q ss_pred HHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 547 LSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 547 ~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
. .+.+.|..+... +.++.+.+|-..-+..++|++..+
T Consensus 165 ~-~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l 202 (213)
T TIGR01277 165 E-EMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVV 202 (213)
T ss_pred H-HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEE
Confidence 5 455777777643 344444444444445556766543
No 156
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=4.3e-22 Score=221.08 Aligned_cols=176 Identities=15% Similarity=0.090 Sum_probs=134.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------ceeeeecchhhhhhh-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARR- 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~RigaveQl~~~~~~- 468 (591)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++ .++|+++|...+...
T Consensus 17 ~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 17 VKALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred eEEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 468999999999999 9999999999999999999999999999999998764 138999997543322
Q ss_pred -----cccceee-cCCC-CCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 469 -----LQVPIFE-KGYE-KDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 469 -----l~v~l~~-~~~~-~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
+...... ..+. .+. ...+.++++.+++... +..+.++||||+|++.||++|+ .+|+++|| |||
T Consensus 95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEP 168 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS-----FESKVIIM-DEP 168 (501)
T ss_pred cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCC
Confidence 2221110 0011 111 2345566666666543 6778899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+|||+..+. .+.+.|..+...+.++.+.+|-+..+..+||++..|
T Consensus 169 t~~LD~~~~~-~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l 214 (501)
T PRK10762 169 TDALTDTETE-SLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF 214 (501)
T ss_pred cCCCCHHHHH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999875 454778888665556666777777777788877554
No 157
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.2e-22 Score=211.10 Aligned_cols=176 Identities=19% Similarity=0.146 Sum_probs=130.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhh--h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~--~ 465 (591)
+.+|++|+|++.+|+ +++|+|+||||||||++.|+|++.|+.|+|.+.+.|+. ++|+|+|... +
T Consensus 28 ~~~l~~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERGK--TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhc
Confidence 568999999999999 99999999999999999999999999999999998752 4899999762 2
Q ss_pred ------hhhcccceeec-CCC-CCHHHHHHHHHHHhhhc--CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 466 ------ARRLQVPIFEK-GYE-KDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 466 ------~~~l~v~l~~~-~~~-~d~~~~a~~al~~~~~~--~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
.+++..++... ... ......+.++++.+++. .++..+..+||||+||+.||++|+ .+|+++|+ |
T Consensus 106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~-----~~P~lLil-D 179 (327)
T PRK11308 106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALM-----LDPDVVVA-D 179 (327)
T ss_pred CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHH-----cCCCEEEE-E
Confidence 12221111110 111 11223456666666553 246778899999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||++||...+...+ +.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 180 EPts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm 228 (327)
T PRK11308 180 EPVSALDVSVQAQVL-NLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM 228 (327)
T ss_pred CCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999986554 677777653 344444444445555667776654
No 158
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.87 E-value=3.2e-22 Score=202.81 Aligned_cols=176 Identities=17% Similarity=0.119 Sum_probs=127.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------------------eee
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------------RSG 457 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------------------Rig 457 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. +++
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 13 LTVLDGLNFSVAAGE--KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eeEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 468999999999999 99999999999999999999999999999999886642 388
Q ss_pred eecchhhhhhhcc----cceee-cCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCC
Q 007747 458 AVEQLRTHARRLQ----VPIFE-KGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNP 528 (591)
Q Consensus 458 aveQl~~~~~~l~----v~l~~-~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~P 528 (591)
+++|...+...+. +.+.. ...+.. ....+.++++.+++... +..+..+|||++|++.|+++|+ .+|
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p 165 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALA-----MRP 165 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHH-----cCC
Confidence 8888754332221 11100 001111 12334555555544332 5677889999999999999999 999
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 529 dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+++|| ||||+|||+..+. .+.+.|..+... +.++.+.+|-+..+..++|++..|
T Consensus 166 ~llll-DEP~~~LD~~~~~-~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T TIGR03005 166 KVMLF-DEVTSALDPELVG-EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF 220 (252)
T ss_pred CEEEE-eCCcccCCHHHHH-HHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 99999 9999999999874 455778777653 444555555555555556766543
No 159
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.9e-22 Score=198.46 Aligned_cols=171 Identities=14% Similarity=0.102 Sum_probs=127.8
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhh------hhccc
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHA------RRLQV 471 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~------~~l~v 471 (591)
+++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+. +++..
T Consensus 17 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGE--RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 7999999999 99999999999999999999999999999999987652 489999975433 22222
Q ss_pred ceeecC-CCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 472 PIFEKG-YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 472 ~l~~~~-~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
++.... ........+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-DEP~~gLD~~~~~-~ 167 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLV-----REQPILLL-DEPFSALDPALRQ-E 167 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHHH-H
Confidence 221110 01112234555666665543 36778899999999999999999 99999999 9999999999874 4
Q ss_pred HHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 550 FNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 550 f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.+.|.++... +.++.+.+|-...+..++|++..+
T Consensus 168 ~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 203 (232)
T PRK10771 168 MLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVV 203 (232)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 55788777553 455556666666666677877554
No 160
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=6.7e-22 Score=195.02 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=121.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------eeeeecchhhhhhhc----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRTHARRL---- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------RigaveQl~~~~~~l---- 469 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|...+...+
T Consensus 15 ~~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 15 RVLFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred eEEEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 358999999999999 99999999999999999999999999999999987641 378887654322111
Q ss_pred ccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 470 QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 470 ~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
++.+....++... ..+.++++.+++... +..+.++||||+|++.|+++|+ .+|+++|| ||||+|+|+..+.
T Consensus 93 ~l~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt~~LD~~~~~- 164 (207)
T PRK13539 93 NLEFWAAFLGGEE-LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLV-----SNRPIWIL-DEPTAALDAAAVA- 164 (207)
T ss_pred HHHHHHHhcCCcH-HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHHH-
Confidence 1111111112222 234566666655432 5677889999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 549 KFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
.+.+.|..+...+.++.+.+|-..-++.
T Consensus 165 ~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 165 LFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 4557777776554444444444444443
No 161
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.87 E-value=6.5e-22 Score=200.61 Aligned_cols=173 Identities=19% Similarity=0.156 Sum_probs=126.6
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh------h
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH------A 466 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~------~ 466 (591)
+|++++|++.+|+ +++|+||||||||||+++|+|++. ..|+|.+.|.++. ++|+++|...+ .
T Consensus 11 ~l~~vsl~i~~Ge--i~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE--ILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6899999999999 999999999999999999999985 5899999998752 27899986432 2
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcC-------CCcEEEEEeccc
Q 007747 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN-------NPDLVLFVGEAL 538 (591)
Q Consensus 467 ~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~-------~PdlILLVDEPt 538 (591)
+++.+..............+.++++.+++.. .+..+..+||||+|++.|+++|+ . +|+++|| ||||
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~~~~~~p~p~llll-DEPt 161 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVL-----QVWPDINPAGQLLLL-DEPM 161 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh-----ccccccCCCCCEEEE-cCCc
Confidence 2222211110111112234556666665543 26778899999999999999999 7 5699998 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+. .+.+.|..+...+.++.+.+|-+..+..++|++..+
T Consensus 162 ~~LD~~~~~-~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 206 (248)
T PRK03695 162 NSLDVAQQA-ALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLL 206 (248)
T ss_pred ccCCHHHHH-HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999874 555888887655555555666666566677877553
No 162
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.87 E-value=6.7e-22 Score=201.01 Aligned_cols=176 Identities=20% Similarity=0.150 Sum_probs=132.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+
T Consensus 14 ~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 14 RLIVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred EEEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 468999999999999 99999999999999999999999999999999987652 38899986532
Q ss_pred -hhhcccceee--cCCC--C-CHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 466 -ARRLQVPIFE--KGYE--K-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 466 -~~~l~v~l~~--~~~~--~-d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
.+++...... ..+. . .....+.++++.+.+.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt 165 (256)
T TIGR03873 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALA-----QEPKLLLL-DEPT 165 (256)
T ss_pred HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCcc
Confidence 2222211100 0011 1 12234556666665543 36778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+ ..+.+.|..+...+.++.+.+|-+..+..++|++..|
T Consensus 166 ~~LD~~~~-~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (256)
T TIGR03873 166 NHLDVRAQ-LETLALVRELAATGVTVVAALHDLNLAASYCDHVVVL 210 (256)
T ss_pred ccCCHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999986 4566888888755555566666666666677877554
No 163
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4e-22 Score=197.14 Aligned_cols=170 Identities=19% Similarity=0.206 Sum_probs=124.2
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchhhhhhhcc-
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~~~~~~l~- 470 (591)
+++|++.+ + +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 16 ~vsl~i~~-e--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-E--VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-e--eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9 99999999999999999999999999999999886641 4889998754332221
Q ss_pred ---cceeecCCC-CCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHH
Q 007747 471 ---VPIFEKGYE-KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (591)
Q Consensus 471 ---v~l~~~~~~-~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 545 (591)
+.+....+. ......+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEPt~~LD~~~ 166 (214)
T cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALA-----AQPELLLL-DEPFSALDRAL 166 (214)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHHH
Confidence 111111111 011233455566555443 25677889999999999999999 99999999 99999999998
Q ss_pred HHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 546 QLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 546 q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+. .+.+.|.++... +.++.+.+|-+.-+..++|++..+
T Consensus 167 ~~-~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (214)
T cd03297 167 RL-QLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM 205 (214)
T ss_pred HH-HHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEE
Confidence 74 455788887654 445555555555566667776553
No 164
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.3e-21 Score=198.03 Aligned_cols=175 Identities=18% Similarity=0.163 Sum_probs=126.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc---------eeeeecchhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF---------RSGAVEQLRTH 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~---------RigaveQl~~~ 465 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.| +.|+|.+.|.++. ++|+++|...+
T Consensus 16 ~~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 16 VEVLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred eeeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 458999999999999 9999999999999999999999874 6999999998752 48999997543
Q ss_pred ------hhhcccceeecCCCCC---HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 466 ------ARRLQVPIFEKGYEKD---PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 466 ------~~~l~v~l~~~~~~~d---~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+++.+.......... ....+.++++.+++. ..+..+.++||||+|++.|+++|+ .+|+++
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~ll 168 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA-----FQPEVL 168 (250)
T ss_pred CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 2222211111111011 123345556655542 236677899999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.. +.++.+.+|-+.-+..++|++..+
T Consensus 169 lL-DEP~~~LD~~~~~-~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14247 169 LA-DEPTANLDPENTA-KIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFL 218 (250)
T ss_pred EE-cCCCccCCHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEE
Confidence 99 9999999999874 45577777753 344444445445555567776543
No 165
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.87 E-value=4.1e-22 Score=210.64 Aligned_cols=177 Identities=15% Similarity=0.078 Sum_probs=129.5
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhh--
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT-- 464 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~-- 464 (591)
...++++|+|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.|.++. ++++|+|...
T Consensus 33 ~~~~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 33 TLKAVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred ceEEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 3568999999999999 99999999999999999999999999999999998752 4899999752
Q ss_pred hh------hhcccceeec--CCC-CCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 465 HA------RRLQVPIFEK--GYE-KDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 465 ~~------~~l~v~l~~~--~~~-~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
+. +++..++... ... .+....+.++++.+++.. .+..+..+||||+||+.||++|+ .+|+++|+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~-----~~P~llil 185 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI-----LEPKLIIC 185 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 22 2221111111 111 112234556666666522 36778899999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+...+ +.|..+... +.++.+.+|-+.-+-.++|++..+
T Consensus 186 -DEPts~LD~~~~~~i~-~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 186 -DEPVSALDVSIQAQVV-NLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred -eCCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999986544 677777653 333444444444455567776553
No 166
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5e-22 Score=209.59 Aligned_cols=176 Identities=17% Similarity=0.112 Sum_probs=129.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc----CCcEEEEcccccc-------------eeeeecch
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTF-------------RSGAVEQL 462 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~----~~G~V~i~~~Dt~-------------RigaveQl 462 (591)
..+|++|||++.+|+ +++|+|+||||||||++.|+|++.+ +.|+|.+.|.|+. ++++++|.
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~ 97 (326)
T PRK11022 20 FRAVDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQD 97 (326)
T ss_pred EEEEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 468999999999999 9999999999999999999999873 7899999998862 38999997
Q ss_pred hh--hhhhccc------ce--eecCCCCCHHHHHHHHHHHhhhcC----CCcchhccchhHHHHHHHHHHHHhchhcCCC
Q 007747 463 RT--HARRLQV------PI--FEKGYEKDPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP 528 (591)
Q Consensus 463 ~~--~~~~l~v------~l--~~~~~~~d~~~~a~~al~~~~~~~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~P 528 (591)
.. +...+.+ .+ +...........+.++++.+++.. .+..+..+||||+||+.||++|+ .+|
T Consensus 98 ~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~-----~~P 172 (326)
T PRK11022 98 PMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIA-----CRP 172 (326)
T ss_pred chhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH-----hCC
Confidence 63 2222211 11 100111122344566666665542 25678899999999999999999 999
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 529 dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+++|+ ||||+|||+..+...+ +.|..+... +.++.+.+|-+.-+..++|++..+
T Consensus 173 ~llil-DEPts~LD~~~~~~il-~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm 227 (326)
T PRK11022 173 KLLIA-DEPTTALDVTIQAQII-ELLLELQQKENMALVLITHDLALVAEAAHKIIVM 227 (326)
T ss_pred CEEEE-eCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999 9999999999986544 777777653 334444444444566677877654
No 167
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.87 E-value=5.9e-22 Score=211.20 Aligned_cols=171 Identities=19% Similarity=0.133 Sum_probs=127.9
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchhhhhhhcc-
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~~~~~~l~- 470 (591)
+++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+.++ .++|+++|...+...+.
T Consensus 15 ~isl~i~~Ge--i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQG--VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999 9999999999999999999999999999999988664 13889999754333221
Q ss_pred ---cceeecCCC-CCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHH
Q 007747 471 ---VPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (591)
Q Consensus 471 ---v~l~~~~~~-~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 545 (591)
+.+...... ......+.++++.+++..+ +..+..+||||+||+.|+++|+ .+|+++|| ||||+|||+..
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~-----~~p~lllL-DEPts~LD~~~ 166 (354)
T TIGR02142 93 RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL-----SSPRLLLM-DEPLAALDDPR 166 (354)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCCcCCCHHH
Confidence 111111111 1112345566666655443 6778899999999999999999 99999999 99999999998
Q ss_pred HHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 546 QLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 546 q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+. .+.+.|..+... +.++.+.+|.+..+..++|++..+
T Consensus 167 ~~-~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l 205 (354)
T TIGR02142 167 KY-EILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVL 205 (354)
T ss_pred HH-HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 74 455778777654 455566666666666677877554
No 168
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.87 E-value=5.3e-22 Score=196.75 Aligned_cols=169 Identities=21% Similarity=0.165 Sum_probs=120.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHA---- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~---- 466 (591)
..++++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++ .++++++|...+.
T Consensus 17 ~~~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 94 (220)
T cd03245 17 IPALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTL 94 (220)
T ss_pred cccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchH
Confidence 358999999999999 9999999999999999999999999999999988764 1488999976432
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHhhhcCC-Cc-----------chhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DV-----------VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 467 -~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~-----------vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
+++. +... .... ..+.++++.+.+.+. +. .+.++||||+|++.|+++|+ .+|+++||
T Consensus 95 ~e~l~--~~~~--~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~-----~~p~llll 164 (220)
T cd03245 95 RDNIT--LGAP--LADD-ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALL-----NDPPILLL 164 (220)
T ss_pred HHHhh--cCCC--CCCH-HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 2221 1111 1111 223334443332211 11 23589999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+. .+.+.|.++... .++.+.+|-+.-+ .++|++..+
T Consensus 165 -DEPt~~LD~~~~~-~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~v~~l 211 (220)
T cd03245 165 -DEPTSAMDMNSEE-RLKERLRQLLGD-KTLIIITHRPSLL-DLVDRIIVM 211 (220)
T ss_pred -eCccccCCHHHHH-HHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCEEEEE
Confidence 9999999999974 455777777653 3444444544444 456766543
No 169
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.3e-22 Score=202.45 Aligned_cols=176 Identities=15% Similarity=0.138 Sum_probs=129.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHA---- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~---- 466 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++ .++|+++|...+.
T Consensus 20 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 20 YTVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 468999999999999 9999999999999999999999999999999998764 1489999975432
Q ss_pred --hhcccceeec-----CCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 --RRLQVPIFEK-----GYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 --~~l~v~l~~~-----~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
+++....... .........+.++++.+++.. .+..+..+|||++|++.|+++|+ .+|+++|| ||||
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~llll-DEPt 171 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA-----QETAIMLL-DEPT 171 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh-----cCCCEEEE-eCcc
Confidence 2221111100 001111234455666655543 36778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+. .+.+.|..+... +.++.+..|-+.-+..++|++..+
T Consensus 172 ~gLD~~~~~-~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l 217 (265)
T PRK10253 172 TWLDISHQI-DLLELLSELNREKGYTLAAVLHDLNQACRYASHLIAL 217 (265)
T ss_pred ccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999874 455777777653 344444444444555667776543
No 170
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=6.4e-22 Score=202.56 Aligned_cols=180 Identities=20% Similarity=0.235 Sum_probs=137.9
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecch
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQL 462 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl 462 (591)
....+--+.++||+++.|+ |++|.|.+|||||||+++|.+++.|+.|+|++.|.|+. +++.|||.
T Consensus 37 ~tg~vvGv~~~sl~v~~Ge--IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~ 114 (386)
T COG4175 37 KTGLVVGVNDASLDVEEGE--IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQS 114 (386)
T ss_pred hhCcEEeeccceeeecCCe--EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhh
Confidence 3444556789999999999 99999999999999999999999999999999999982 48899996
Q ss_pred hh------hhhhcccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 463 RT------HARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 463 ~~------~~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
.- ..++....+...+-.+ +..+.+.++++..++.++ +.++-.+|||||||+.|||||+ ++|+++|+
T Consensus 115 FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla-----~~~~IlLM- 188 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALA-----NDPDILLM- 188 (386)
T ss_pred hccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHc-----cCCCEEEe-
Confidence 53 3444333333333222 223566777777788877 6889999999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEE-EeccccccCCcEEE-EEecc
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI-LLTKFDTIDDKHYQ-WSMCR 588 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I-IlTK~D~i~d~vGa-ls~~~ 588 (591)
|||++.|||.-+. .++..|.++.... .-|.+ |--.+|+ +=+.|. |.++.
T Consensus 189 DEaFSALDPLIR~-~mQdeLl~Lq~~l---~KTIvFitHDLdE-AlriG~rIaimk 239 (386)
T COG4175 189 DEAFSALDPLIRT-EMQDELLELQAKL---KKTIVFITHDLDE-ALRIGDRIAIMK 239 (386)
T ss_pred cCchhhcChHHHH-HHHHHHHHHHHHh---CCeEEEEecCHHH-HHhccceEEEec
Confidence 9999999998764 4545555554432 23333 4446787 567888 77764
No 171
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8.7e-22 Score=197.40 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=131.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhc---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l--- 469 (591)
..++++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.|.++. ++|+++|.......+
T Consensus 13 ~~il~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 468999999999999 99999999999999999999999999999999887652 488999876443222
Q ss_pred ---ccceeecCCC-CCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 470 ---QVPIFEKGYE-KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 470 ---~v~l~~~~~~-~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
...+...+.. ......+..+++.+++.. .+..+.++|||++|++.|+++|+ .+|+++|| ||||+|+|+.
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~-----~~p~llll-DEP~~gLD~~ 164 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALV-----NEPKVLLL-DEPLGALDLK 164 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHH
Confidence 1111111111 111233445566555543 36778899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 545 DQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+ ..|.+.|..+... +.++.+.+|-..-+..++|++..+
T Consensus 165 ~~-~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l 204 (232)
T cd03300 165 LR-KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVM 204 (232)
T ss_pred HH-HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 97 4566888887653 455555555555666667776553
No 172
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.87 E-value=8.4e-22 Score=196.73 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=127.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~---- 466 (591)
..++++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 97 (225)
T PRK10247 20 AKILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTV 97 (225)
T ss_pred ceeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccH
Confidence 468999999999999 99999999999999999999999999999999987642 488999875332
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 467 -~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+++.+...... .......+.++++.+++.. .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 98 ~enl~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~LD~ 170 (225)
T PRK10247 98 YDNLIFPWQIRN-QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ-----FMPKVLLL-DEITSALDE 170 (225)
T ss_pred HHHHHhHHhhcC-CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCH
Confidence 22222110011 1112234455666665532 36778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+ ..+.+.|.++... +.++.+.+|-..-+. .+|++..+
T Consensus 171 ~~~-~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l 210 (225)
T PRK10247 171 SNK-HNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITL 210 (225)
T ss_pred HHH-HHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEE
Confidence 986 4555777777543 444455555555554 36666554
No 173
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.87 E-value=8.3e-22 Score=198.05 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=125.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh--hcCCcEEEEcccccc--------e--eeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF--------R--SGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--~~~~G~V~i~~~Dt~--------R--igaveQl~~~~~ 467 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++ .|+.|+|.+.+.++. + +++++|...+..
T Consensus 13 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 13 KEILKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred EEEEeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 458999999999999 99999999999999999999995 689999999987641 2 778888754322
Q ss_pred hc------ccceee-cC------CC-CCHHHHHHHHHHHhhhc-CC-Ccchh-ccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 468 RL------QVPIFE-KG------YE-KDPAIVAKEAIQEATRN-GS-DVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 468 ~l------~v~l~~-~~------~~-~d~~~~a~~al~~~~~~-~~-d~vli-DtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.+ ...... .. .. ......+.++++.+++. .. +..+. ++||||+|++.|+++|+ .+|++
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~l 165 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL-----LEPKL 165 (243)
T ss_pred CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh-----cCCCE
Confidence 22 111100 00 00 01123345556655554 22 45555 59999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc-CCcEEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI-DDKHYQW 584 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i-~d~vGal 584 (591)
+|| ||||+|||+..+ ..+.+.|..+...+.++.+.+|-+.-+..+ +|++..+
T Consensus 166 lll-DEPt~~LD~~~~-~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l 218 (243)
T TIGR01978 166 AIL-DEIDSGLDIDAL-KIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVL 218 (243)
T ss_pred EEe-cCCcccCCHHHH-HHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence 999 999999999987 455588888865545555555555555555 5666443
No 174
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=9.3e-22 Score=211.28 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=128.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhhc---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRL--- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~l--- 469 (591)
..+|++++|++.+|+ +++|+|||||||||||++|||++.|+.|+|.+.|.++ .++|+++|...+...+
T Consensus 32 ~~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 32 QHAVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 468999999999999 9999999999999999999999999999999999875 2499999976544433
Q ss_pred ---ccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 470 ---QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 470 ---~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
..++....... .....+.++++.+.+.++ +..+..+||||+||++|+|+|+ .+|+++|| |||+++||+.
T Consensus 110 eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~-----~~P~lLLL-DEP~s~LD~~ 183 (377)
T PRK11607 110 QNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA-----KRPKLLLL-DEPMGALDKK 183 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHH
Confidence 22221111111 112345566666666544 6788899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccceEEEec----cccccCCcEEEE
Q 007747 545 DQLSKFNQKLADLSSSPNPQLIDGILLT----KFDTIDDKHYQW 584 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlT----K~D~i~d~vGal 584 (591)
.+. .+.+.|..+... .+++.+++| .+..++|++..+
T Consensus 184 ~r~-~l~~~l~~l~~~---~g~tii~vTHd~~ea~~laDri~vl 223 (377)
T PRK11607 184 LRD-RMQLEVVDILER---VGVTCVMVTHDQEEAMTMAGRIAIM 223 (377)
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 874 344555555432 234445554 444567776543
No 175
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.9e-22 Score=199.87 Aligned_cols=175 Identities=18% Similarity=0.178 Sum_probs=125.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-----CcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-----~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+ .|+|.+.|.++. ++|+++|..
T Consensus 17 ~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 17 NHVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94 (253)
T ss_pred eeeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence 458999999999999 99999999999999999999999874 899999987642 388999875
Q ss_pred hhh------hhcccceeecCCCCCH---HHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 464 THA------RRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 464 ~~~------~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
.+. +++............. ...+.++++.+++. ..+..+..+|||++|++.|+++|+ .+|+
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ 169 (253)
T PRK14267 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA-----MKPK 169 (253)
T ss_pred ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh-----cCCC
Confidence 433 2222111111110111 12344555554432 135677889999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..+
T Consensus 170 llll-DEP~~~LD~~~~~-~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 170 ILLM-DEPTANIDPVGTA-KIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred EEEE-cCCCccCCHHHHH-HHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEE
Confidence 9999 9999999998874 45577777754 344555555555556667776543
No 176
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.1e-21 Score=217.95 Aligned_cols=177 Identities=13% Similarity=0.093 Sum_probs=134.5
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc--CCcEEEEccccc----------ceeeeecchhhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDT----------FRSGAVEQLRTHA 466 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~--~~G~V~i~~~Dt----------~RigaveQl~~~~ 466 (591)
...+|+++||++.+|+ +++|+||||||||||+++|+|++.| +.|+|.+.|.++ .++|+++|...+.
T Consensus 17 ~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 17 GVKALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred CeEeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccC
Confidence 3468999999999999 9999999999999999999999986 799999998765 2389999975433
Q ss_pred hh------cccceeecCCC-CC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 467 RR------LQVPIFEKGYE-KD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 467 ~~------l~v~l~~~~~~-~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
.. +.+.......+ .+ ....+.++++.+++... +..+.++||||+||+.||++|+ .+|+++|| |
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~-----~~p~lllL-D 168 (506)
T PRK13549 95 KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN-----KQARLLIL-D 168 (506)
T ss_pred CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 22 22221111011 11 12345566776666443 6778899999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+.. +.+.|..+...+.++.+.+|-+.-+..+||++-.|
T Consensus 169 EPt~~LD~~~~~~-l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 169 EPTASLTESETAV-LLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred CCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEE
Confidence 9999999999754 44788888665556666777777777778877554
No 177
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.1e-22 Score=210.43 Aligned_cols=171 Identities=18% Similarity=0.143 Sum_probs=126.9
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchhhhhhhccc
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHARRLQV 471 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~~~~~~l~v 471 (591)
+++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+.++ .++|+++|...+...+.+
T Consensus 16 ~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQG--ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999 9999999999999999999999999999999988653 138999997644333321
Q ss_pred c-eeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 472 P-IFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 472 ~-l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
. ....+........+.++++.+++..+ +..+..+||||+||+.|+|+|+ .+|+++|| ||||+|||+..+. .
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~-----~~p~llLL-DEPts~LD~~~~~-~ 166 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALL-----TAPELLLM-DEPLASLDLPRKR-E 166 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCcccCCHHHHH-H
Confidence 1 00000011123345666776666543 6778899999999999999999 99999999 9999999999874 4
Q ss_pred HHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 550 FNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 550 f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.+.|..+... +.++.+.+|-...+..++|++..+
T Consensus 167 l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l 202 (352)
T PRK11144 167 LLPYLERLAREINIPILYVSHSLDEILRLADRVVVL 202 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEE
Confidence 55777777654 344555555555566677876553
No 178
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.86 E-value=1.1e-21 Score=186.92 Aligned_cols=143 Identities=14% Similarity=0.167 Sum_probs=107.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
..++++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++.+... ...... .+.+
T Consensus 13 ~~vl~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~---~~~~~~--~i~~------ 79 (163)
T cd03216 13 VKALDGVSLSVRRGE--VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP---RDARRA--GIAM------ 79 (163)
T ss_pred eEEEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCH---HHHHhc--CeEE------
Confidence 358999999999999 999999999999999999999999999999998866422100 000000 1111
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
+.++||||+|++.++++|. .+|+++|| ||||+|||+..+ ..+.+.|..+..
T Consensus 80 ----------------------~~qLS~G~~qrl~laral~-----~~p~illl-DEP~~~LD~~~~-~~l~~~l~~~~~ 130 (163)
T cd03216 80 ----------------------VYQLSVGERQMVEIARALA-----RNARLLIL-DEPTAALTPAEV-ERLFKVIRRLRA 130 (163)
T ss_pred ----------------------EEecCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCcCCCHHHH-HHHHHHHHHHHH
Confidence 1119999999999999999 99999999 999999999987 455578887765
Q ss_pred CCCCccceEEEeccccccCCcEEEE
Q 007747 560 SPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 560 ~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+.++.+..|-..-+..++|++..+
T Consensus 131 ~~~tiii~sh~~~~~~~~~d~~~~l 155 (163)
T cd03216 131 QGVAVIFISHRLDEVFEIADRVTVL 155 (163)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4444444444444555667776543
No 179
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=7.1e-22 Score=201.07 Aligned_cols=175 Identities=21% Similarity=0.180 Sum_probs=126.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc-----cc-------------eeeeecc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-----TF-------------RSGAVEQ 461 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D-----t~-------------RigaveQ 461 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.+ +. ++|+++|
T Consensus 19 ~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 19 RKGCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred ceeeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 458999999999999 999999999999999999999999999999999877 32 3889998
Q ss_pred hhhh--------hhhcccceeecC-CC-CCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 462 LRTH--------ARRLQVPIFEKG-YE-KDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 462 l~~~--------~~~l~v~l~~~~-~~-~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
.... .+++...+.... .. ......+.++++.+.... .+..+..+||||+|++.|+|+|+ .+|+
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~-----~~p~ 171 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLV-----THPR 171 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHh-----cCCC
Confidence 7531 111111110000 00 111233455566665532 35677889999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
++|| ||||+|||+..+. .+.+.|..+... +.++.+.+|-+..+..++|++..
T Consensus 172 llll-DEPt~~LD~~~~~-~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~ 224 (258)
T PRK11701 172 LVFM-DEPTGGLDVSVQA-RLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV 224 (258)
T ss_pred EEEE-cCCcccCCHHHHH-HHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 9999 9999999999874 455777776553 34445555555556666777644
No 180
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=7.9e-22 Score=198.58 Aligned_cols=191 Identities=20% Similarity=0.243 Sum_probs=140.3
Q ss_pred HHHHHHHHHHcCCCC-ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce-------
Q 007747 384 AAMEEALVRILTPRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------- 455 (591)
Q Consensus 384 ~~l~~~L~~il~~~~-~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R------- 455 (591)
..+...|..++.+.. ++.++.||||.+++|+ +++|+|||||||||||++|.|++.|++|+|.+.|.|.||
T Consensus 20 pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~ 97 (325)
T COG4586 20 PGLKGSLNHFFHRKERSIEAVQDISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97 (325)
T ss_pred chhHHHHHhhcCchhhhhhhhheeeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH
Confidence 346677777777654 6789999999999999 999999999999999999999999999999999999986
Q ss_pred -eeeecchhh-------hhhhcccceeecCCCCCHH---HHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhch
Q 007747 456 -SGAVEQLRT-------HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLI 523 (591)
Q Consensus 456 -igaveQl~~-------~~~~l~v~l~~~~~~~d~~---~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~ 523 (591)
+++|.--++ ..+- +.+....|.-... +......+.+.+.++ .....-+|-|++.|..|+.+|.
T Consensus 98 ~~~~v~gqk~ql~Wdlp~~ds--~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLL--- 172 (325)
T COG4586 98 SIGLVMGQKLQLWWDLPALDS--LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALL--- 172 (325)
T ss_pred HHHHHhhhhheeeeechhhhh--HHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhc---
Confidence 333221110 0000 0011111222222 223333444444443 4666778999999999999999
Q ss_pred hcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEEE
Q 007747 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQWS 585 (591)
Q Consensus 524 ~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGals 585 (591)
++|++++| ||||.|||...|.. ..+.|+.+.+. +.++.+++|++.-+.+.|+++-.|+
T Consensus 173 --h~p~VLfL-DEpTvgLDV~aq~~-ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~ 231 (325)
T COG4586 173 --HPPKVLFL-DEPTVGLDVNAQAN-IREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID 231 (325)
T ss_pred --CCCcEEEe-cCCccCcchhHHHH-HHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee
Confidence 89998888 99999999999854 44677777654 4678899999999999999876543
No 181
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.86 E-value=1.4e-21 Score=195.04 Aligned_cols=176 Identities=15% Similarity=0.138 Sum_probs=124.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh---cCCcEEEEccccc------ceeeeecchhhhhh---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDT------FRSGAVEQLRTHAR--- 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~---~~~G~V~i~~~Dt------~RigaveQl~~~~~--- 467 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++. |+.|+|.+.+.+. .++++++|...+..
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 97 (226)
T cd03234 20 ARILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLT 97 (226)
T ss_pred cccccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCc
Confidence 568999999999999 999999999999999999999998 8999999998775 24899998754332
Q ss_pred ---hcccceeecCCCC-CHH---HHHHH-HHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 468 ---RLQVPIFEKGYEK-DPA---IVAKE-AIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 468 ---~l~v~l~~~~~~~-d~~---~~a~~-al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
++.+......... ... ..+.. .++.+..... +..+..+|||++|++.++++|+ .+|+++|| ||||
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~illl-DEP~ 171 (226)
T cd03234 98 VRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL-----WDPKVLIL-DEPT 171 (226)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH-----hCCCEEEE-eCCC
Confidence 2221111111111 111 11222 3444433332 4567889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEe-ccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL-TKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIl-TK~D~i~d~vGal 584 (591)
+|||+..+ ..|.+.|.++...+.++.+.+|-. ..+-.++|++..+
T Consensus 172 ~gLD~~~~-~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 172 SGLDSFTA-LNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred cCCCHHHH-HHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 99999987 456678887765443444444433 1333457776543
No 182
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.5e-21 Score=200.19 Aligned_cols=175 Identities=16% Similarity=0.064 Sum_probs=126.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhh-h----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-H---- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~-~---- 465 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.|.++. ++|+++|... +
T Consensus 22 ~~~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 22 SFTLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred CcceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 348999999999999 99999999999999999999999999999999987751 3899998752 2
Q ss_pred --hhhcccceeecCCCCC-HHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 466 --ARRLQVPIFEKGYEKD-PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 466 --~~~l~v~l~~~~~~~d-~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
.+++............ ....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~lllL-DEPt~~L 173 (269)
T PRK13648 100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLA-----LNPSVIIL-DEATSML 173 (269)
T ss_pred cHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccC
Confidence 1111111110111111 1123445566555543 36778899999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 542 DAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+..+. .+.+.|..+... +.++.+.+|-+.-+.. +|++..+
T Consensus 174 D~~~~~-~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l 215 (269)
T PRK13648 174 DPDARQ-NLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVM 215 (269)
T ss_pred CHHHHH-HHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEE
Confidence 999874 455777777643 4455555555555544 6666543
No 183
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=7e-22 Score=201.56 Aligned_cols=176 Identities=14% Similarity=0.134 Sum_probs=130.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC---CcEEEEcccccc--------------eeeeecch
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTF--------------RSGAVEQL 462 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~---~G~V~i~~~Dt~--------------RigaveQl 462 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+ +|+|.+.|.++. ++++++|.
T Consensus 17 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 17 HQALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred eEEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 468999999999999 99999999999999999999999876 499999987642 37899987
Q ss_pred hhhhh------hcccceeec------C---CCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcC
Q 007747 463 RTHAR------RLQVPIFEK------G---YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (591)
Q Consensus 463 ~~~~~------~l~v~l~~~------~---~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~ 526 (591)
..+.. ++....... . ........+.++++.+++.. .+..+.++||||+|++.|+++|+ .
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~ 169 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM-----Q 169 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHh-----c
Confidence 53322 222111100 0 01112234556666665543 36778899999999999999999 9
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 527 ~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|+++|| ||||+|||+..+ ..+.+.|..+... +.++.+.+|-+..+..++|++..|
T Consensus 170 ~p~llll-DEPt~~LD~~~~-~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l 226 (262)
T PRK09984 170 QAKVILA-DEPIASLDPESA-RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226 (262)
T ss_pred CCCEEEe-cCccccCCHHHH-HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999 999999999987 4566888887653 455555556666666678877654
No 184
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=1.1e-21 Score=192.29 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=117.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhh------
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTH------ 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~------ 465 (591)
..+|++++|++.+|+ +++|+||||+||||+++.|+|++.|+.|+|.+.+.++. ++|+++|...+
T Consensus 14 ~~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 14 QPLLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred eeEEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCH
Confidence 458999999999999 99999999999999999999999999999999987642 37888875432
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
.+++..... .... ...+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|+|+.
T Consensus 92 ~~~~~~~~~---~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~-----~~p~~lil-DEP~~~LD~~ 161 (200)
T PRK13540 92 RENCLYDIH---FSPG-AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWM-----SKAKLWLL-DEPLVALDEL 161 (200)
T ss_pred HHHHHHHHh---cCcc-hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcccCHH
Confidence 222221110 1111 223455666555433 36677899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccceEE
Q 007747 545 DQLSKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~I 569 (591)
.+. .+.+.|..+...+.++.+.+|
T Consensus 162 ~~~-~l~~~l~~~~~~~~tiii~sh 185 (200)
T PRK13540 162 SLL-TIITKIQEHRAKGGAVLLTSH 185 (200)
T ss_pred HHH-HHHHHHHHHHHcCCEEEEEeC
Confidence 874 555778777554333333333
No 185
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9.9e-22 Score=218.58 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=132.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------ceeeeecchhhhh---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHA--- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~RigaveQl~~~~--- 466 (591)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++ .++|+++|...+.
T Consensus 18 ~~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 18 VHALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred eEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 468999999999999 9999999999999999999999999999999998765 1389999975432
Q ss_pred ---hhcccceeec--CCCC---C---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 467 ---RRLQVPIFEK--GYEK---D---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 467 ---~~l~v~l~~~--~~~~---d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
+++.+..+.. .++. + ....+.++++.+++... +..+.++||||+||+.||++|+ .+|+++||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~-----~~p~lllL- 169 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM-----LDAKVIIM- 169 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 2222211100 0111 1 12345556666665443 6778899999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+.. +.+.|.++...+.++.+.+|-+.-+..++|++..+
T Consensus 170 DEPt~~LD~~~~~~-l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l 218 (510)
T PRK09700 170 DEPTSSLTNKEVDY-LFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM 218 (510)
T ss_pred eCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999754 55788888765555556666666666777876543
No 186
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=202.40 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=128.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCC---cEEEEcccccc---------eeeeecchhh---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK---VSVMMAACDTF---------RSGAVEQLRT--- 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~---G~V~i~~~Dt~---------RigaveQl~~--- 464 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|.. |+|.+.+.++. ++|+++|...
T Consensus 20 ~~~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~ 97 (282)
T PRK13640 20 KPALNDISFSIPRGS--WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQF 97 (282)
T ss_pred ccceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhh
Confidence 358999999999999 999999999999999999999999986 89999987752 4899998752
Q ss_pred ----hhhhcccceeecCCCCCHH---HHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 465 ----HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 465 ----~~~~l~v~l~~~~~~~d~~---~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
..+++. +....++.... ..+.++++.+++..+ +..+..+||||+|++.|+++|+ .+|+++|| ||
T Consensus 98 ~~~tv~enl~--~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~-----~~P~llll-DE 169 (282)
T PRK13640 98 VGATVGDDVA--FGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA-----VEPKIIIL-DE 169 (282)
T ss_pred ccCCHHHHHH--hhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-EC
Confidence 122222 11111222222 334556666555443 6778899999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+|||+..+. .+.+.|..+... +.++.+.+|-+..+. .+|++..+
T Consensus 170 Pt~gLD~~~~~-~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l 216 (282)
T PRK13640 170 STSMLDPAGKE-QILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVL 216 (282)
T ss_pred CcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE
Confidence 99999999975 455777777653 455555556555664 46766443
No 187
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.86 E-value=8.4e-22 Score=190.58 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=112.8
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhhhccc
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRLQV 471 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~~l~v 471 (591)
+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|.... .
T Consensus 15 ~l~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~-----~ 87 (182)
T cd03215 15 AVRDVSFEVRAGE--IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR-----E 87 (182)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCccc-----C
Confidence 7899999999999 99999999999999999999999999999999987752 25555554210 0
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
.++.. . .+.+.+.... .+||||+|++.|+++|+ .+|+++|| ||||+|+|+..+. .+.
T Consensus 88 ~~~~~---~----t~~e~l~~~~---------~LS~G~~qrl~la~al~-----~~p~llll-DEP~~~LD~~~~~-~l~ 144 (182)
T cd03215 88 GLVLD---L----SVAENIALSS---------LLSGGNQQKVVLARWLA-----RDPRVLIL-DEPTRGVDVGAKA-EIY 144 (182)
T ss_pred cccCC---C----cHHHHHHHHh---------hcCHHHHHHHHHHHHHc-----cCCCEEEE-CCCCcCCCHHHHH-HHH
Confidence 00000 0 0111111110 09999999999999999 99999999 9999999999874 555
Q ss_pred HHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.|..+...+.++.+.+|-..-+..++|++..+
T Consensus 145 ~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l 177 (182)
T cd03215 145 RLIRELADAGKAVLLISSELDELLGLCDRILVM 177 (182)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 788887655455555556555565667776543
No 188
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.86 E-value=1.2e-21 Score=199.10 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=127.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc----CCcEEEEccccc-------ceeeeecchhh--hh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDT-------FRSGAVEQLRT--HA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~----~~G~V~i~~~Dt-------~RigaveQl~~--~~ 466 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.| +.|+|.+.|.++ .++++++|... +.
T Consensus 16 ~~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 16 QPLVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred cceecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccC
Confidence 358999999999999 9999999999999999999999998 899999998765 24899999753 22
Q ss_pred hhcc----cceeecCCCC-CHHHHHHHHHHHhhhcC----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 467 RRLQ----VPIFEKGYEK-DPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 467 ~~l~----v~l~~~~~~~-d~~~~a~~al~~~~~~~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
..+. +.......+. .....+.++++.+++.. .+..+.++|||++|++.|+++|+ .+|+++|| |||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~lLlL-DEP 167 (254)
T PRK10418 94 PLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL-----CEAPFIIA-DEP 167 (254)
T ss_pred ccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh-----cCCCEEEE-eCC
Confidence 1111 1000001111 12244566666666543 25667889999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+|||+..+ ..+.+.|..+... +.++.+.+|-+..+..++|++..+
T Consensus 168 t~~LD~~~~-~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 168 TTDLDVVAQ-ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred CcccCHHHH-HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE
Confidence 999999886 4555778777543 344444445444455567776443
No 189
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.4e-21 Score=198.47 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=127.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.| +.|+|.+.+.++. ++|+++|..
T Consensus 32 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 32 KQALFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 468999999999999 9999999999999999999999874 8999999987652 378999864
Q ss_pred hh-----hhhcccceeecCC--C-CCHHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 464 TH-----ARRLQVPIFEKGY--E-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~--~-~d~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.. .+++.+.....+. . ......+.++++.+++.. .+..+..+||||+||+.|+++|+ .+|++
T Consensus 110 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p~l 184 (267)
T PRK14235 110 NPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA-----VSPEV 184 (267)
T ss_pred CCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH-----cCCCE
Confidence 32 2222211110111 1 111233455555554421 24567789999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..+
T Consensus 185 llL-DEPt~~LD~~~~~-~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 185 ILM-DEPCSALDPIATA-KVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred EEE-eCCCcCCCHHHHH-HHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEE
Confidence 999 9999999999874 55578887754 345555666666666777777543
No 190
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.8e-22 Score=218.43 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=132.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH---- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~---- 465 (591)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+
T Consensus 11 ~~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 468999999999999 99999999999999999999999999999999987642 48999997533
Q ss_pred --hhhcccceee-cCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 466 --ARRLQVPIFE-KGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 466 --~~~l~v~l~~-~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
.+++....+. .....+. ...+.++++.+++... +..+..+||||+|++.||++|+ .+|+++|| ||||
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~-----~~p~lllL-DEPt 162 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS-----YNAKIVIM-DEPT 162 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCC
Confidence 2222221111 0100111 2334555666555433 6778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+.. +.+.|.++...+.++.+.+|-+.-+..+||++..+
T Consensus 163 ~~LD~~~~~~-l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l 207 (491)
T PRK10982 163 SSLTEKEVNH-LFTIIRKLKERGCGIVYISHKMEEIFQLCDEITIL 207 (491)
T ss_pred CCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999998754 44778887665555566666666667778877554
No 191
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=2.8e-22 Score=199.70 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=128.7
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------e--eeeecchhhh-
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------R--SGAVEQLRTH- 465 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------R--igaveQl~~~- 465 (591)
.....+++++||++.+|+ +++|||||||||||++++|+|+++|+.|+|.+.|.|+- | ++--||....
T Consensus 14 FGGl~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred cCCEEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 345789999999999999 99999999999999999999999999999999999872 2 4455665433
Q ss_pred -----hhhccccee----------ecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcC
Q 007747 466 -----ARRLQVPIF----------EKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (591)
Q Consensus 466 -----~~~l~v~l~----------~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~ 526 (591)
.+++.+... ...+.++ ..+.+.+.++.+++... +...-++|+|+|+++.|||+|+ .
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa-----~ 166 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA-----T 166 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh-----c
Confidence 333322211 1112112 23455556666666554 6777889999999999999999 9
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC-CCccceEEEeccccccCCcEEEE
Q 007747 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 527 ~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|.++|| |||++|+.+.+... +.+.+.++.... .++.+-=|.+.-+=.+||++-++
T Consensus 167 ~P~lLLL-DEPaAGln~~e~~~-l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 167 QPKLLLL-DEPAAGLNPEETEE-LAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred CCCEEEe-cCccCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEec
Confidence 9999999 99999999998754 447788887632 22222223333344456665543
No 192
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.1e-21 Score=198.63 Aligned_cols=176 Identities=17% Similarity=0.214 Sum_probs=127.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. |+.|+|.+.+.++. ++|+++|..
T Consensus 23 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 100 (264)
T PRK14243 23 FLAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP 100 (264)
T ss_pred EEEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCC
Confidence 468999999999999 999999999999999999999976 37899999886641 389999964
Q ss_pred h-----hhhhcccceeecCCCCCHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 464 T-----HARRLQVPIFEKGYEKDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 464 ~-----~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
. ..+++........+.......+.++++.+... ..+..+.++||||+|++.|+++|+ .+|+++||
T Consensus 101 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL 175 (264)
T PRK14243 101 NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA-----VQPEVILM 175 (264)
T ss_pred ccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 3 23333222111111111223334444443321 135667889999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQWS 585 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGals 585 (591)
||||+|||+..+. .+.+.|..+... .++.+.+|-+.-+..++|++..|.
T Consensus 176 -DEPt~~LD~~~~~-~l~~~L~~~~~~-~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 176 -DEPCSALDPISTL-RIEELMHELKEQ-YTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred -eCCCccCCHHHHH-HHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEe
Confidence 9999999999875 455888887653 455555566666677788876653
No 193
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=217.78 Aligned_cols=175 Identities=15% Similarity=0.173 Sum_probs=132.8
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------ceeeeecchh-------
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLR------- 463 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~RigaveQl~------- 463 (591)
.+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++|+++|..
T Consensus 277 ~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (510)
T PRK09700 277 KKVRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP 354 (510)
T ss_pred CcccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcC
Confidence 37999999999999 9999999999999999999999999999999988664 1389999962
Q ss_pred --hhhhhcccceee--cCC----C----CCHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 464 --THARRLQVPIFE--KGY----E----KDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 464 --~~~~~l~v~l~~--~~~----~----~d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
+..+++.+.... ..+ + ......+.++++.+++. . .+..+.++||||+||+.||++|+ .+|+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~-----~~p~ 429 (510)
T PRK09700 355 NFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC-----CCPE 429 (510)
T ss_pred CCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh-----cCCC
Confidence 123333222110 000 1 11123455677777664 3 47788999999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++|| ||||+|||+..+. .+.+.|..+...+.++.+.+|-+.-+..+||++..|
T Consensus 430 lLlL-DEPt~~LD~~~~~-~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 430 VIIF-DEPTRGIDVGAKA-EIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred EEEE-CCCCCCcCHHHHH-HHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 9999 9999999999874 455788887765556666666666677778876554
No 194
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.2e-21 Score=188.85 Aligned_cols=150 Identities=24% Similarity=0.232 Sum_probs=111.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce-----------eeeecchhhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-----------SGAVEQLRTHARR 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R-----------igaveQl~~~~~~ 468 (591)
..++++++|++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.+... +++++|...+...
T Consensus 13 ~~~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGE--IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 458999999999999 999999999999999999999999999999998876422 3444433211100
Q ss_pred cccceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 469 LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 469 l~v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
+ .+.+.+.. -+||||+|++.|+++|+ .+|+++|| ||||+|+|+..+..
T Consensus 91 ~---------------t~~~~l~~-----------~lS~G~~qr~~la~al~-----~~p~llil-DEP~~~LD~~~~~~ 138 (178)
T cd03229 91 L---------------TVLENIAL-----------GLSGGQQQRVALARALA-----MDPDVLLL-DEPTSALDPITRRE 138 (178)
T ss_pred C---------------CHHHheee-----------cCCHHHHHHHHHHHHHH-----CCCCEEEE-eCCcccCCHHHHHH
Confidence 0 00110000 09999999999999999 99999999 99999999999754
Q ss_pred HHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 549 KFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 549 ~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.+.|..+... +.++.+.+|-..-++.++|++..+
T Consensus 139 -l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 174 (178)
T cd03229 139 -VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVL 174 (178)
T ss_pred -HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 44777777665 455555666656666667766543
No 195
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.86 E-value=1.6e-21 Score=195.76 Aligned_cols=170 Identities=19% Similarity=0.185 Sum_probs=120.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l- 469 (591)
..+|++++|++++|+ +++|+||||||||||+++|+|+++|..|+|.+.+.++. ++++++|...+...-
T Consensus 16 ~~~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 93 (238)
T cd03249 16 VPILKGLSLTIPPGK--TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTI 93 (238)
T ss_pred ccceeceEEEecCCC--EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhH
Confidence 458999999999999 99999999999999999999999999999999987652 489999975433210
Q ss_pred --ccceeecCCCCCHHHHHHHHHHH------hhhc--C----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQE------ATRN--G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~------~~~~--~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
++.+..... ... .....++. +... + .+..+..+||||+|++.|+++|+ .+|+++|| |
T Consensus 94 ~e~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-D 164 (238)
T cd03249 94 AENIRYGKPDA--TDE-EVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL-----RNPKILLL-D 164 (238)
T ss_pred HHHhhccCCCC--CHH-HHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 111111111 111 11111111 1100 1 23456789999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|||+|||+..+. .+.+.|..+. .+.++.+.+|-+.-+. .+|++..
T Consensus 165 EP~~gLD~~~~~-~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~ 209 (238)
T cd03249 165 EATSALDAESEK-LVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAV 209 (238)
T ss_pred CccccCCHHHHH-HHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEE
Confidence 999999999974 5657777775 4444555555555555 4676644
No 196
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.4e-21 Score=198.87 Aligned_cols=175 Identities=20% Similarity=0.232 Sum_probs=126.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.| +.|+|.+.+.++. .+|+++|..
T Consensus 17 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 17 FHAVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP 94 (258)
T ss_pred EeeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence 468999999999999 9999999999999999999999874 6999999987641 388999865
Q ss_pred hh------hhhcccceeecCC-CCC-HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 464 TH------ARRLQVPIFEKGY-EKD-PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 464 ~~------~~~l~v~l~~~~~-~~d-~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.+ .+++...+..... ... ....+.++++.+++. ..+..+.++|||++|++.|+++|. .+|++
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~l 169 (258)
T PRK14241 95 NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA-----VEPDV 169 (258)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCE
Confidence 33 2222221111110 111 123344555555431 235677899999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..+
T Consensus 170 lll-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 170 LLM-DEPCSALDPISTL-AIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred EEE-cCCCccCCHHHHH-HHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 999 9999999999874 45577877754 345555556666666677876554
No 197
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.86 E-value=2.7e-21 Score=194.59 Aligned_cols=176 Identities=19% Similarity=0.163 Sum_probs=131.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhcc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l~-- 470 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 13 ~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGS--LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 468999999999999 99999999999999999999999999999999887752 3889998765433221
Q ss_pred --cceeecCCCCCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 471 --VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 471 --v~l~~~~~~~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
+.+....++... ...+.++++.+.+.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|+|+.
T Consensus 91 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~-----~~p~llll-DEP~~~LD~~ 164 (237)
T TIGR00968 91 DNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALA-----VEPQVLLL-DEPFGALDAK 164 (237)
T ss_pred HHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHH
Confidence 111111111111 233445555554433 25677889999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 545 DQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+ ..+.+.|..+... +.++.+.+|-..-+..++|++..|
T Consensus 165 ~~-~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l 204 (237)
T TIGR00968 165 VR-KELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVM 204 (237)
T ss_pred HH-HHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEE
Confidence 87 4555778777654 455666666666666777877554
No 198
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=206.19 Aligned_cols=177 Identities=16% Similarity=0.082 Sum_probs=127.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh----cCCcEEEEcccccc-------------eeeeecc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL----QHKVSVMMAACDTF-------------RSGAVEQ 461 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~----~~~G~V~i~~~Dt~-------------RigaveQ 461 (591)
...+|++|||++.+|+ +++|+|+||||||||+++|+|++. ++.|+|.+.|.++. ++++++|
T Consensus 19 ~~~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q 96 (330)
T PRK15093 19 WVKAVDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CEEEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 3568999999999999 999999999999999999999986 47899999998752 3899999
Q ss_pred hhhh--------hhhcccceeecCC-C---C---CHHHHHHHHHHHhhhcC----CCcchhccchhHHHHHHHHHHHHhc
Q 007747 462 LRTH--------ARRLQVPIFEKGY-E---K---DPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKL 522 (591)
Q Consensus 462 l~~~--------~~~l~v~l~~~~~-~---~---d~~~~a~~al~~~~~~~----~d~vliDtSGg~~qr~~LaraL~kl 522 (591)
.... .+++...+....+ + . .....+.++++.+++.. .+..+..+||||+||+.||++|+
T Consensus 97 ~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~-- 174 (330)
T PRK15093 97 EPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA-- 174 (330)
T ss_pred CcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH--
Confidence 7531 1111111100000 0 0 11234556666666543 24677899999999999999999
Q ss_pred hhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 523 IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 523 ~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+|+++|+ ||||+|||+..+.. +.+.|.++... +.++.+.+|-+.-+..++|++..+
T Consensus 175 ---~~P~llil-DEPts~LD~~~~~~-i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 175 ---NQPRLLIA-DEPTNAMEPTTQAQ-IFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred ---CCCCEEEE-eCCCCcCCHHHHHH-HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99999999 99999999999854 44777777653 333334444444454667776543
No 199
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.6e-21 Score=195.88 Aligned_cols=174 Identities=19% Similarity=0.140 Sum_probs=128.2
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhccc---
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV--- 471 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l~v--- 471 (591)
+|++++|++.+|+ +++|+||||+||||++++|+|++.|+.|+|.+.|.++. ++++++|...+...+.+
T Consensus 14 ~l~~is~~i~~Ge--~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGD--YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999 99999999999999999999999999999999997763 48899987544332211
Q ss_pred -ceeecCCCCC---HHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 472 -PIFEKGYEKD---PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 472 -~l~~~~~~~d---~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
.+....++.. ....+.++++.+++.. .+..+.++||||+|++.|+++|+ .+|+++|| ||||+|+|+..+
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEPt~gLD~~~~ 165 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALV-----VNPKILLL-DEPFSALDVRTK 165 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-CCCcccCCHHHH
Confidence 1100111111 2233445565555443 25677889999999999999999 99999999 999999999997
Q ss_pred HHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 547 LSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 547 ~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
. .+.+.|.++... +.++.+.+|-+.-+..++|++..+
T Consensus 166 ~-~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l 203 (235)
T cd03299 166 E-KLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIM 203 (235)
T ss_pred H-HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4 455777777553 445555555555556667766543
No 200
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.86 E-value=2.1e-21 Score=215.46 Aligned_cols=176 Identities=15% Similarity=0.095 Sum_probs=132.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc--CCcEEEEccccc----------ceeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDT----------FRSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~--~~G~V~i~~~Dt----------~RigaveQl~~~~~ 467 (591)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.| +.|+|.+.+.++ .++|+++|...+..
T Consensus 14 ~~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 14 VKALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred eEeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 458999999999999 9999999999999999999999986 799999998764 24899999764332
Q ss_pred h------cccceeec--C--CCC-CHHHHHHHHHHHhhhcCC--CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 468 R------LQVPIFEK--G--YEK-DPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 468 ~------l~v~l~~~--~--~~~-d~~~~a~~al~~~~~~~~--d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
. +.+..... . ... .....+.++++.+++... +..+.++||||+||+.||++|+ .+|+++||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~-----~~p~lllL- 165 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN-----KQARLLIL- 165 (500)
T ss_pred CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh-----hCCCEEEE-
Confidence 2 22211100 0 111 112345556666665433 3567899999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+.. +.+.|.++...+.++.+.+|-+.-+..+||++..|
T Consensus 166 DEPt~~LD~~~~~~-l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 166 DEPSSSLTEKETEI-LLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred eCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence 99999999999754 44788888766556666667666677778877554
No 201
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=198.65 Aligned_cols=176 Identities=16% Similarity=0.206 Sum_probs=125.2
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecch
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQL 462 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl 462 (591)
...+|++++|++.+|+ +++|+||||+|||||+++|+|++. |+.|+|.+.|.++. ++|+++|.
T Consensus 33 ~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 33 EKRAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred CceeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 3468999999999999 999999999999999999999864 68999999887641 48999987
Q ss_pred hhh-----hhhcccceeecCCCCC--HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 463 RTH-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 463 ~~~-----~~~l~v~l~~~~~~~d--~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
..+ .+++...+........ ....+.+++..+... ..+..+..+||||+|++.|+++|+ .+|++
T Consensus 111 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~-----~~p~l 185 (268)
T PRK14248 111 PNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA-----MKPAV 185 (268)
T ss_pred CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh-----CCCCE
Confidence 533 2222221110010011 112234444444331 124567789999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|| ||||+|||+..+. .+.+.|.++.. ..++.+.+|-+.-+..++|++..+
T Consensus 186 llL-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 186 LLL-DEPASALDPISNA-KIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred EEE-cCCCcccCHHHHH-HHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEE
Confidence 999 9999999999874 45578887754 344555555555666677877554
No 202
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.1e-21 Score=195.03 Aligned_cols=175 Identities=19% Similarity=0.173 Sum_probs=126.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh---cCCcEEEEcccccc---------eeeeecchhhh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTF---------RSGAVEQLRTH-- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~---~~~G~V~i~~~Dt~---------RigaveQl~~~-- 465 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. |+.|+|.+.|.++. ++|+++|...+
T Consensus 15 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 15 KQALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred EeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 468999999999999 999999999999999999999974 68999999998752 38999997533
Q ss_pred ---hhhcccceeecCC--C-CCHHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 466 ---ARRLQVPIFEKGY--E-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 466 ---~~~l~v~l~~~~~--~-~d~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
.+++.+....... . ......+.++++.+++.. .+..+..+|||++|++.|+|+|+ .+|+++||
T Consensus 93 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL- 166 (246)
T PRK14269 93 KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA-----IKPKLLLL- 166 (246)
T ss_pred ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 2222211100011 0 111223445555555421 24566789999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|+|+..+ ..+.+.|..+.. +.++.+.+|-+.-+..++|++..|
T Consensus 167 DEP~~~LD~~~~-~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 167 DEPTSALDPISS-GVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred cCCcccCCHHHH-HHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEE
Confidence 999999999887 455577777754 445555555555556667776554
No 203
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=216.56 Aligned_cols=176 Identities=14% Similarity=0.167 Sum_probs=132.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-cCCcEEEEcccccc----------eeeeecchhh---h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTF----------RSGAVEQLRT---H 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-~~~G~V~i~~~Dt~----------RigaveQl~~---~ 465 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++. |++|+|.+.+.++. ++|+++|... +
T Consensus 275 ~~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (506)
T PRK13549 275 IKRVDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352 (506)
T ss_pred cccccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCC
Confidence 458999999999999 999999999999999999999998 59999999887641 3899999742 2
Q ss_pred ------hhhcccceeecCCC---CC---HHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 466 ------ARRLQVPIFEKGYE---KD---PAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 466 ------~~~l~v~l~~~~~~---~d---~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+++.+.++...+. .+ ....+.++++.+.+. . .+..+.++||||+||+.||++|+ .+|+++
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~-----~~p~ll 427 (506)
T PRK13549 353 VPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL-----LNPKIL 427 (506)
T ss_pred cCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh-----hCCCEE
Confidence 22222221111110 01 123456677777664 2 47788999999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+.. +.+.|..+...+.++.+.+|.+.-+..+||++..+
T Consensus 428 lL-DEPt~~LD~~~~~~-l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l 478 (506)
T PRK13549 428 IL-DEPTRGIDVGAKYE-IYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVM 478 (506)
T ss_pred EE-cCCCCCcCHhHHHH-HHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99 99999999999754 45788888766555666666666666778876543
No 204
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2e-21 Score=197.12 Aligned_cols=175 Identities=15% Similarity=0.213 Sum_probs=124.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.| +.|+|.+.+.++. ++|+++|..
T Consensus 20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (254)
T PRK14273 20 FKALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP 97 (254)
T ss_pred ceeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence 458999999999999 9999999999999999999999987 4899999886531 389999875
Q ss_pred hhh-----hhcccceeecC-CCC-CHHHHHHHHHHHhhh-----cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 THA-----RRLQVPIFEKG-YEK-DPAIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~-~~~-d~~~~a~~al~~~~~-----~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
... +++........ ... .....+.++++.+.+ ...+..+.++||||+|++.|+|+|+ .+|+++
T Consensus 98 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~ll 172 (254)
T PRK14273 98 NPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA-----IEPNVI 172 (254)
T ss_pred ccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH-----cCCCEE
Confidence 332 22221111111 111 112334445554432 1236677899999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..+
T Consensus 173 lL-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l 222 (254)
T PRK14273 173 LM-DEPTSALDPISTG-KIEELIINLKE-SYTIIIVTHNMQQAGRISDRTAFF 222 (254)
T ss_pred EE-eCCCcccCHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99 9999999999875 45578887753 344444444444555667776543
No 205
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.86 E-value=1.9e-21 Score=205.50 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=126.7
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC---CcEEEEcccccc-------------eeeeecch
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTF-------------RSGAVEQL 462 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~---~G~V~i~~~Dt~-------------RigaveQl 462 (591)
...+|++|||++.+|+ +++|+|+||+|||||++.|+|++.|. .|+|.+.|.|+. ++++++|.
T Consensus 28 ~~~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~ 105 (330)
T PRK09473 28 DVTAVNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQD 105 (330)
T ss_pred CEEEEeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcC
Confidence 3568999999999999 99999999999999999999999885 899999998862 48999998
Q ss_pred hh--hhhhccc------ceeec-CCC-CCHHHHHHHHHHHhhhcC----CCcchhccchhHHHHHHHHHHHHhchhcCCC
Q 007747 463 RT--HARRLQV------PIFEK-GYE-KDPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP 528 (591)
Q Consensus 463 ~~--~~~~l~v------~l~~~-~~~-~d~~~~a~~al~~~~~~~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~P 528 (591)
.. +...+.+ .+... ... .+....+.++++.+++.+ .+..+..+||||+||+.||++|+ .+|
T Consensus 106 ~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~-----~~P 180 (330)
T PRK09473 106 PMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL-----CRP 180 (330)
T ss_pred chhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHH-----cCC
Confidence 62 2221211 11111 111 112234455565554432 13567889999999999999999 999
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 529 dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+++|+ ||||++||+..+...+ +.|..+... +.++.+.+|-+.-+-.++|++..+
T Consensus 181 ~llil-DEPts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm 235 (330)
T PRK09473 181 KLLIA-DEPTTALDVTVQAQIM-TLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235 (330)
T ss_pred CEEEE-eCCCccCCHHHHHHHH-HHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99999 9999999999986544 677777653 333333333333444567776553
No 206
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.86 E-value=2.2e-21 Score=194.69 Aligned_cols=168 Identities=20% Similarity=0.225 Sum_probs=119.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHA---- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~---- 466 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|..|+|.+.+.++ .++|+++|...+.
T Consensus 15 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 92 (237)
T cd03252 15 PVILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSI 92 (237)
T ss_pred ccceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchH
Confidence 458999999999999 9999999999999999999999999999999998764 2489999975432
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHH------hhhc--C----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 467 -RRLQVPIFEKGYEKDPAIVAKEAIQE------ATRN--G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 467 -~~l~v~l~~~~~~~d~~~~a~~al~~------~~~~--~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
+++. +.... ..... +..+++. +... + .+..+.++||||+|++.|+++|+ .+|+++||
T Consensus 93 ~~nl~--~~~~~--~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll 162 (237)
T cd03252 93 RDNIA--LADPG--MSMER-VIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI-----HNPRILIF 162 (237)
T ss_pred HHHhh--ccCCC--CCHHH-HHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh-----hCCCEEEE
Confidence 2221 11111 11111 1111111 1110 1 13456789999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||||+|||+..+. .+.+.|..+.. +.++.+.+|-+.-+.. +|++..
T Consensus 163 -DEP~~~LD~~~~~-~l~~~l~~~~~-~~tiii~sH~~~~~~~-~d~v~~ 208 (237)
T cd03252 163 -DEATSALDYESEH-AIMRNMHDICA-GRTVIIIAHRLSTVKN-ADRIIV 208 (237)
T ss_pred -eCCcccCCHHHHH-HHHHHHHHhcC-CCEEEEEeCCHHHHHh-CCEEEE
Confidence 9999999999974 55577777753 4455555555555543 566544
No 207
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-21 Score=196.23 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=125.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++.| +.|+|.+.+.++. .+|+++|..
T Consensus 25 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 25 KQALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred eeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 458999999999999 9999999999999999999999875 7999999886541 388999865
Q ss_pred hh-----hhhcccceeecCCCCCH---HHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 464 TH-----ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.+ .+++.+... .++... ...+.++++.+++. ..+..+..+||||+|++.|+++|+ .+|++
T Consensus 103 ~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~l 175 (258)
T PRK14268 103 NPFPMSIYDNVAYGPR--IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA-----VKPKI 175 (258)
T ss_pred ccCcccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH-----cCCCE
Confidence 33 222222111 111111 12345566655442 135667889999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|| ||||+|||+..+. .+.+.|..+.. +.++.+.+|-+.-+..+||++..+
T Consensus 176 lll-DEPt~~LD~~~~~-~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l 226 (258)
T PRK14268 176 ILF-DEPTSALDPISTA-RIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFF 226 (258)
T ss_pred EEE-eCCCcccCHHHHH-HHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 999 9999999999975 45577777753 344555555555555667776553
No 208
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.85 E-value=3.4e-21 Score=184.87 Aligned_cols=144 Identities=22% Similarity=0.233 Sum_probs=107.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhcc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l~ 470 (591)
..++++++|.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+
T Consensus 15 ~~~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~----- 87 (173)
T cd03246 15 PPVLRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDEL----- 87 (173)
T ss_pred CcceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcc-----
Confidence 358999999999999 99999999999999999999999999999999987652 24555543211
Q ss_pred cceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHH
Q 007747 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 471 v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
+ . .. +.+ . . +||||+|++.|+++|+ .+|+++|| ||||+|||+..+. .+
T Consensus 88 ---~----~---~t-v~~---~-----l------LS~G~~qrv~la~al~-----~~p~~lll-DEPt~~LD~~~~~-~l 135 (173)
T cd03246 88 ---F----S---GS-IAE---N-----I------LSGGQRQRLGLARALY-----GNPRILVL-DEPNSHLDVEGER-AL 135 (173)
T ss_pred ---c----c---Cc-HHH---H-----C------cCHHHHHHHHHHHHHh-----cCCCEEEE-ECCccccCHHHHH-HH
Confidence 0 0 00 111 0 0 9999999999999999 99999999 9999999999975 45
Q ss_pred HHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
.+.|..+...+.++.+.+|-..-+. .+|++..
T Consensus 136 ~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~ 167 (173)
T cd03246 136 NQAIAALKAAGATRIVIAHRPETLA-SADRILV 167 (173)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEE
Confidence 5777777654444444444333443 4666544
No 209
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=9.7e-22 Score=189.95 Aligned_cols=170 Identities=19% Similarity=0.198 Sum_probs=130.5
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhh
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA 466 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~ 466 (591)
.+....+|+++|+.+++|+ +++|||||||||||||.+++++++.+.|+|.+.|.++- ++...-|...+.
T Consensus 10 ~y~~~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hhCCEEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 3456679999999999999 99999999999999999999999999999999998872 344444443332
Q ss_pred hhcc---------cceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 467 RRLQ---------VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 467 ~~l~---------v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
-++. .|+.......+....+.+|++++.+.+. |..+-.+|||++||.-+|+.|+ .+.|.+|| ||
T Consensus 88 ~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla-----QdTdyvlL-DE 161 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA-----QDTDYVLL-DE 161 (252)
T ss_pred heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee-----ccCcEEEe-cC
Confidence 2331 2322222234556788999999999887 7888889999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCC-CCccceEEEeccc
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKF 574 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~ 574 (591)
|++.||.......+ +.|+.+..+. +++.+-.|-++-.
T Consensus 162 PLNNLDmkHsv~iM-k~Lrrla~el~KtiviVlHDINfA 199 (252)
T COG4604 162 PLNNLDMKHSVQIM-KILRRLADELGKTIVVVLHDINFA 199 (252)
T ss_pred cccccchHHHHHHH-HHHHHHHHHhCCeEEEEEecccHH
Confidence 99999998876554 7777776553 4444434444433
No 210
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.6e-21 Score=216.62 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=131.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhh--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR-- 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~-- 467 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+..
T Consensus 17 ~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 17 VKALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 458999999999999 99999999999999999999999999999999987652 3899999754332
Q ss_pred ----hcccceeecCCC-CCH---HHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 468 ----RLQVPIFEKGYE-KDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 468 ----~l~v~l~~~~~~-~d~---~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
++.+.......+ .+. ...+.++++.+++.. .+..+.++||||+|++.||++|+ .+|+++|| ||||
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL-DEPt 168 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA-----RNARVIAF-DEPT 168 (501)
T ss_pred CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH-----hCCCEEEE-cCCC
Confidence 222211111111 111 234555666666543 36778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+.. +.+.|..+...+.++.+.+|-+.-+..+||++..+
T Consensus 169 ~~LD~~~~~~-l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l 213 (501)
T PRK11288 169 SSLSAREIEQ-LFRVIRELRAEGRVILYVSHRMEEIFALCDAITVF 213 (501)
T ss_pred CCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999998754 45777777655455555555555566677876554
No 211
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.2e-21 Score=195.44 Aligned_cols=175 Identities=16% Similarity=0.222 Sum_probs=125.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh--c---CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~--~---~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. | +.|+|.+.+.++. ++++++|..
T Consensus 17 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14256 17 NHAVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94 (252)
T ss_pred eeEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCC
Confidence 458999999999999 999999999999999999999986 4 5899999987652 388999975
Q ss_pred hhh------hhcccceeecC-CC-CCHHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 464 THA------RRLQVPIFEKG-YE-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 464 ~~~------~~l~v~l~~~~-~~-~d~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.+. +++.+.+.... .. .+....+.++++.+++.. .+..+.++||||+|++.|+++|+ .+|++
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~-----~~p~l 169 (252)
T PRK14256 95 NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA-----VKPEV 169 (252)
T ss_pred CCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh-----cCCCE
Confidence 432 22222111111 11 111233445555554321 24567789999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|| ||||+|+|+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..+
T Consensus 170 lll-DEP~~gLD~~~~~-~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 170 ILM-DEPASALDPISTL-KIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred EEE-cCCcccCCHHHHH-HHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEE
Confidence 999 9999999999874 45577888764 344444555555566677877654
No 212
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.8e-21 Score=186.80 Aligned_cols=146 Identities=21% Similarity=0.311 Sum_probs=107.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQVP 472 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~v~ 472 (591)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++.|..|+|.+.+.++. ++++++|...+...+
T Consensus 14 ~~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 88 (173)
T cd03230 14 TALDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENL--- 88 (173)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCC---
Confidence 58999999999999 99999999999999999999999999999999987652 355666542211000
Q ss_pred eeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHH
Q 007747 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552 (591)
Q Consensus 473 l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~ 552 (591)
. +.+.+ .+||||+|++.|+++|+ .+|+++|+ ||||+|||+..+. .+.+
T Consensus 89 --------t----v~~~~-------------~LS~G~~qrv~laral~-----~~p~illl-DEPt~~LD~~~~~-~l~~ 136 (173)
T cd03230 89 --------T----VRENL-------------KLSGGMKQRLALAQALL-----HDPELLIL-DEPTSGLDPESRR-EFWE 136 (173)
T ss_pred --------c----HHHHh-------------hcCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccCCCHHHHH-HHHH
Confidence 0 11111 09999999999999999 99999999 9999999999874 4557
Q ss_pred HHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 553 KLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 553 ~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
.|..+...+.++.+..|-..-+..++|++..
T Consensus 137 ~l~~~~~~g~tiii~th~~~~~~~~~d~i~~ 167 (173)
T cd03230 137 LLRELKKEGKTILLSSHILEEAERLCDRVAI 167 (173)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence 7877765433333333333334445565543
No 213
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=2.9e-21 Score=192.76 Aligned_cols=166 Identities=18% Similarity=0.191 Sum_probs=120.0
Q ss_pred cccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----ceeeeecchhhh--------hhhcccceee
Q 007747 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTH--------ARRLQVPIFE 475 (591)
Q Consensus 408 ~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----~RigaveQl~~~--------~~~l~v~l~~ 475 (591)
|++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++++++|...+ .+++......
T Consensus 1 l~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGE--LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence 3467899 9999999999999999999999999999999999875 348999997533 1111111100
Q ss_pred --cCC--CC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 476 --KGY--EK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 476 --~~~--~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
... .. .....+.++++.+++... +..+.++||||+|++.|+++|+ .+|+++|| ||||+|||+..+. .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llil-DEP~~~LD~~~~~-~ 151 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALA-----TRPSVLLL-DEPFTGLDMPTQE-L 151 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHHH-H
Confidence 000 11 112345556666665433 5677899999999999999999 99999999 9999999999974 5
Q ss_pred HHHHHHHhhcCCCCccceEEEeccccccCCcEE
Q 007747 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vG 582 (591)
+.+.|.++...+.++.+.+|-+.-+..++|++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~ 184 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLAQAMATCDRVV 184 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 557788776554444445554444556677663
No 214
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=2.7e-21 Score=213.98 Aligned_cols=176 Identities=16% Similarity=0.034 Sum_probs=131.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhh---h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---R 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~---~ 467 (591)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.+.. ++|+++|..... .
T Consensus 16 ~~il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 16 TKTLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eeecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 458999999999999 99999999999999999999999999999998776541 278888854220 0
Q ss_pred ---hcccceeecC-CCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 468 ---RLQVPIFEKG-YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 468 ---~l~v~l~~~~-~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
..+..+.... ........+.++++.+++..+ +..+.++||||+||+.||++|+ .+|+++|| ||||+|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~~LD 167 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALM-----SEPDLLIL-DEPFDGLD 167 (490)
T ss_pred chhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCcccCC
Confidence 0111111110 011122345566766665443 6788899999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+..+. .+.+.|..+...+.++.+.+|-+.-+..+||++..|
T Consensus 168 ~~~~~-~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l 208 (490)
T PRK10938 168 VASRQ-QLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL 208 (490)
T ss_pred HHHHH-HHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence 99974 455888888766556666667666667777877654
No 215
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=215.56 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=131.1
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------ceeeeecchhh---h--
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRT---H-- 465 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~RigaveQl~~---~-- 465 (591)
.+++++||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++ .++|+++|.+. +
T Consensus 267 ~~l~~isl~i~~Ge--~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGE--IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCc--EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 47899999999999 9999999999999999999999999999999988654 24889999753 2
Q ss_pred ----hhhcccceeec----C--CCC-CHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 466 ----ARRLQVPIFEK----G--YEK-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 466 ----~~~l~v~l~~~----~--~~~-d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
.+++.+..... + +.. .....+.++++.+++. . .+..+.++||||+||+.||++|+ .+|+++|
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~-----~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS-----EDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc-----cCCCEEE
Confidence 23222211110 0 011 1123455666666652 2 47788999999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
| ||||+|||+..+.. +.+.|..+...+.++.+.+|-+.-+..+||++..+
T Consensus 420 L-DEPt~~LD~~~~~~-l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l 469 (501)
T PRK11288 420 L-DEPTRGIDVGAKHE-IYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVM 469 (501)
T ss_pred E-cCCCCCCCHhHHHH-HHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEE
Confidence 9 99999999999754 44778888766555555555555577777776554
No 216
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=200.40 Aligned_cols=172 Identities=22% Similarity=0.253 Sum_probs=123.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. |+.|+|.+.|.++. ++++++|..
T Consensus 52 ~~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 52 EQALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred EeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 458999999999999 999999999999999999999986 58999999887641 388999875
Q ss_pred hh-----hhhcccceeecCCCCCHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 464 TH-----ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+ .+++.......+...+....+.++++.+++. ..+..+..+||||+|++.|+++|+ .+|+++||
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~-----~~p~lLLL 204 (285)
T PRK14254 130 NPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA-----PDPEVILM 204 (285)
T ss_pred ccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 32 2222221111111111223345555555432 125667899999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
||||+|||+..+. .+.+.|..+... .++.+..|-+.-+..++|++
T Consensus 205 -DEPts~LD~~~~~-~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dri 249 (285)
T PRK14254 205 -DEPASALDPVATS-KIEDLIEELAEE-YTVVIVTHNMQQAARISDKT 249 (285)
T ss_pred -eCCCCCCCHHHHH-HHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEE
Confidence 9999999999874 555788887653 33444444444445566664
No 217
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=4.4e-21 Score=188.34 Aligned_cols=162 Identities=20% Similarity=0.183 Sum_probs=113.0
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhh-----hhcccceee
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----RRLQVPIFE 475 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~-----~~l~v~l~~ 475 (591)
.+|++++|++++|+ +++|+||||+|||||++.|+|++.|+.|+|.+.| ++|+++|...+. +++...
T Consensus 19 ~il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q~~~l~~~t~~enl~~~--- 89 (204)
T cd03250 19 FTLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQEPWIQNGTIRENILFG--- 89 (204)
T ss_pred ceeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEecCchhccCcHHHHhccC---
Confidence 58999999999999 9999999999999999999999999999999988 899999986543 222111
Q ss_pred cCCCCCHHHHHHHHHHH------hhhc--C----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 476 KGYEKDPAIVAKEAIQE------ATRN--G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~------~~~~--~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
... ... ...++.+. +... + .+.....+|||++|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 90 ~~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~-----~~p~llll-DEP~~~LD~ 160 (204)
T cd03250 90 KPF--DEE-RYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY-----SDADIYLL-DDPLSAVDA 160 (204)
T ss_pred CCc--CHH-HHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eCccccCCH
Confidence 111 111 11222221 1111 1 23446789999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
..+...+...+..+...+.++.+.+|-..-+.. +|++
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i 197 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQI 197 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEE
Confidence 887544433455554433333333333333343 4544
No 218
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3e-21 Score=198.94 Aligned_cols=171 Identities=13% Similarity=0.091 Sum_probs=125.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhh--h---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT--H--- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~--~--- 465 (591)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++.|+.|+|.+.|.++. ++|+++|... +
T Consensus 20 ~~~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 20 VNQLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred CeeeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 358999999999999 99999999999999999999999999999999987752 3899999752 1
Q ss_pred --hhhcccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 466 --ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 466 --~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
.+++..... ..+... ...+..+++.+++..+ +..+..+||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 98 tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~-----~~p~llll-DEPt~ 169 (277)
T PRK13642 98 TVEDDVAFGME--NQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA-----LRPEIIIL-DESTS 169 (277)
T ss_pred CHHHHHHhhHH--HcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 222211111 111112 1334555665554333 5667889999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vG 582 (591)
|||+..+. .+.+.|..+... +.++.+.+|-+.-+. .+|++.
T Consensus 170 ~LD~~~~~-~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~ 211 (277)
T PRK13642 170 MLDPTGRQ-EIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRIL 211 (277)
T ss_pred cCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE
Confidence 99999974 555788777654 444444444444444 356553
No 219
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.85 E-value=3.3e-21 Score=191.58 Aligned_cols=174 Identities=18% Similarity=0.164 Sum_probs=126.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~~ 467 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+..
T Consensus 18 ~~il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 468999999999999 99999999999999999999999999999999887652 3899999765433
Q ss_pred hcc----cceeecCCC-CCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 468 RLQ----VPIFEKGYE-KDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 468 ~l~----v~l~~~~~~-~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
.+. +.+....+. ... ...+.++++.+.+... +..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 96 ~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~-----~~p~illl-DEP~ 169 (220)
T TIGR02982 96 FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV-----HRPKLVLA-DEPT 169 (220)
T ss_pred CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCC
Confidence 221 111111111 111 2334556666655433 6778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+|+|+..+. .+.+.|..+... +.++.+.+|-..-.+ ++|++..
T Consensus 170 ~~LD~~~~~-~l~~~l~~~~~~~~~tii~~sh~~~~~~-~~d~v~~ 213 (220)
T TIGR02982 170 AALDSKSGR-DVVELMQKLAREQGCTILIVTHDNRILD-VADRIVH 213 (220)
T ss_pred CcCCHHHHH-HHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEE
Confidence 999999874 455777777642 344444444443332 4565543
No 220
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.4e-21 Score=193.20 Aligned_cols=169 Identities=18% Similarity=0.185 Sum_probs=117.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhhhc--
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL-- 469 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~~l-- 469 (591)
.++++++|++.+|+ +++|+||||+|||||+++|+|++.|..|+|.+.+.++ .++++++|...+...-
T Consensus 17 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (229)
T cd03254 17 PVLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94 (229)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHH
Confidence 58999999999999 9999999999999999999999999999999988664 2389999976443210
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHhhhc--------CC----CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 470 -QVPIFEKGYEKDPAIVAKEAIQEATRN--------GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 470 -~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~----d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
++.++...+ .. ..+..+++.+... ++ +..+..+||||+|++.|+++|+ .+|+++|| ||
T Consensus 95 ~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~-----~~p~llll-DE 165 (229)
T cd03254 95 ENIRLGRPNA--TD-EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML-----RDPKILIL-DE 165 (229)
T ss_pred HHHhccCCCC--CH-HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eC
Confidence 111111111 11 1122222221111 11 2345789999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||+|||+..+. .+.+.|..+.. +.++.+.+|-..-+.. +|++..
T Consensus 166 P~~~LD~~~~~-~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~ 209 (229)
T cd03254 166 ATSNIDTETEK-LIQEALEKLMK-GRTSIIIAHRLSTIKN-ADKILV 209 (229)
T ss_pred ccccCCHHHHH-HHHHHHHHhcC-CCEEEEEecCHHHHhh-CCEEEE
Confidence 99999999874 45577777643 3444444444444433 555543
No 221
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.5e-21 Score=198.18 Aligned_cols=175 Identities=17% Similarity=0.196 Sum_probs=124.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.+ ..|+|.+.+.++. ++++++|..
T Consensus 33 ~~~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~ 110 (274)
T PRK14265 33 FLALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP 110 (274)
T ss_pred eEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCC
Confidence 458999999999999 9999999999999999999999863 5899999987642 488999864
Q ss_pred hh-----hhhcccceeecCCCCCHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 464 TH-----ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+ .+++........+.......+.++++.+.+. ..+..+..+||||+|++.|+++|+ .+|+++||
T Consensus 111 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~-----~~p~lllL 185 (274)
T PRK14265 111 NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA-----MKPDVLLM 185 (274)
T ss_pred ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh-----hCCCEEEE
Confidence 32 2222221111111111122233444443321 135667789999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..|
T Consensus 186 -DEPt~~LD~~~~~-~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 233 (274)
T PRK14265 186 -DEPCSALDPISTR-QVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFF 233 (274)
T ss_pred -eCCcccCCHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999874 45577877754 344444555555677777877665
No 222
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.4e-21 Score=194.22 Aligned_cols=175 Identities=18% Similarity=0.225 Sum_probs=124.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhh---hhc--CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW---LLQ--HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~---l~~--~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|+ +++ +.|+|.+.|.++. ++++++|..
T Consensus 16 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 93 (250)
T PRK14245 16 FHALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93 (250)
T ss_pred EeEEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCC
Confidence 458999999999999 9999999999999999999997 344 4899999987652 388999875
Q ss_pred hh-----hhhcccceeecCCCCC--HHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d--~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++...+........ ....+.++++.+++.. .+..+.++||||+|++.|+++|+ .+|+++
T Consensus 94 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ll 168 (250)
T PRK14245 94 NPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA-----VSPSVL 168 (250)
T ss_pred ccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 2222211111111111 1233455565554421 24567789999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.. +.++.+.+|-+.-+..++|++..|
T Consensus 169 lL-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l 218 (250)
T PRK14245 169 LM-DEPASALDPISTA-KVEELIHELKK-DYTIVIVTHNMQQAARVSDKTAFF 218 (250)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence 99 9999999999874 45578877743 344455555555566667776554
No 223
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=3.4e-21 Score=198.34 Aligned_cols=176 Identities=18% Similarity=0.120 Sum_probs=127.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC--------CcEEEEcccccc---------eeeeecch
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--------KVSVMMAACDTF---------RSGAVEQL 462 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~--------~G~V~i~~~Dt~---------RigaveQl 462 (591)
..+|+++||++.+|+ +++|+||||||||||++.|+|++.|. .|+|.+.|.+.. ++++++|.
T Consensus 14 ~~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 14 RAILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91 (272)
T ss_pred EeEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence 458999999999999 99999999999999999999999987 899999987652 27888886
Q ss_pred hh------hhhhcccceeecC-----CCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcC----
Q 007747 463 RT------HARRLQVPIFEKG-----YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN---- 526 (591)
Q Consensus 463 ~~------~~~~l~v~l~~~~-----~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~---- 526 (591)
.. ..+++....+... +.......+.++++.+++.. .+..+.++||||+|++.|+++|+ .
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~~~~ 166 (272)
T PRK13547 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA-----QLWPP 166 (272)
T ss_pred CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----ccccc
Confidence 43 2233222211110 01112234555666665543 25677899999999999999999 6
Q ss_pred -----CCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 527 -----NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 527 -----~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|+++|| ||||+|||+..+. .+.+.|..+... +.++.+.+|-+.-+..++|++..|
T Consensus 167 ~~~~~~p~lllL-DEPt~~LD~~~~~-~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 167 HDAAQPPRYLLL-DEPTAALDLAHQH-RLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred cccCCCCCEEEE-cCccccCCHHHHH-HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 8999999 9999999999974 455778777654 445555555555555567766543
No 224
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=2.4e-21 Score=196.30 Aligned_cols=175 Identities=21% Similarity=0.124 Sum_probs=124.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc-----c-------------ceeeeecc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-----T-------------FRSGAVEQ 461 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D-----t-------------~RigaveQ 461 (591)
..+|++++|++.+|+ +++|+||||+||||||++|+|++.|..|+|.+.+.+ + .++++++|
T Consensus 16 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 16 GKGCRDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred ceEeecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 357999999999999 999999999999999999999999999999998765 2 13788888
Q ss_pred hhhhh--------hhcccce--eecCCCCCHHHHHHHHHHHhhhc--CCCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 462 LRTHA--------RRLQVPI--FEKGYEKDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 462 l~~~~--------~~l~v~l--~~~~~~~d~~~~a~~al~~~~~~--~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
..... +++...+ +...........+.+.++.+++. ..+..+..+||||+|++.|+++|+ .+|+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~ 168 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV-----TRPR 168 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHh-----cCCC
Confidence 64211 1111000 00000001123344556655553 235677889999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
++|| ||||+|||+..+. .+.+.|..+... +.++.+.+|-...+..++|++..
T Consensus 169 vlll-DEP~~~LD~~~~~-~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~ 221 (253)
T TIGR02323 169 LVFM-DEPTGGLDVSVQA-RLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLV 221 (253)
T ss_pred EEEE-cCCCccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 9999 9999999999874 455777776543 34445555555555556676544
No 225
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.9e-21 Score=193.27 Aligned_cols=167 Identities=20% Similarity=0.217 Sum_probs=118.7
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----h
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~-----~ 466 (591)
.++++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.|.++. ++++++|...+ .
T Consensus 16 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (234)
T cd03251 16 PVLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVA 93 (234)
T ss_pred cceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHH
Confidence 58999999999999 99999999999999999999999999999999886642 38898887533 2
Q ss_pred hhcccceeecCCCCCHHHHHHHHH------HHhhhc--C----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 467 RRLQVPIFEKGYEKDPAIVAKEAI------QEATRN--G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 467 ~~l~v~l~~~~~~~d~~~~a~~al------~~~~~~--~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
+++. +....+ ... .+...+ +.+... + .+..+.++|||++|++.|+++|+ .+|+++||
T Consensus 94 enl~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~lllL- 162 (234)
T cd03251 94 ENIA--YGRPGA--TRE-EVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL-----KDPPILIL- 162 (234)
T ss_pred HHhh--ccCCCC--CHH-HHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 2221 111111 111 111111 111111 1 23456789999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||||+|||+..+. .+.+.|..+.+ +.++.+.+|-+.-+.. +|++..
T Consensus 163 DEP~~~LD~~~~~-~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~v~~ 208 (234)
T cd03251 163 DEATSALDTESER-LVQAALERLMK-NRTTFVIAHRLSTIEN-ADRIVV 208 (234)
T ss_pred eCccccCCHHHHH-HHHHHHHHhcC-CCEEEEEecCHHHHhh-CCEEEE
Confidence 9999999999974 55577777753 4444455555555544 666644
No 226
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.7e-21 Score=194.75 Aligned_cols=174 Identities=15% Similarity=0.174 Sum_probs=123.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. |+.|+|.+.+.++. ++++++|..
T Consensus 26 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 26 FHALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred eEEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 468999999999999 999999999999999999999986 47899999886641 488999975
Q ss_pred hhh-----hhcccceee-cCCCC-CHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 THA-----RRLQVPIFE-KGYEK-DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~~-----~~l~v~l~~-~~~~~-d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+. +++...... ..... .....+.++++.+++. ..+..+..+||||+|++.|+++|+ .+|+++
T Consensus 104 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ll 178 (260)
T PRK10744 104 TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA-----IRPEVL 178 (260)
T ss_pred ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH-----CCCCEE
Confidence 432 222211100 01111 1113345566655432 135667789999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|| ||||+|||+..+. .|.+.|.++.. +.++.+.+|-+.-+..++|++..
T Consensus 179 lL-DEPt~~LD~~~~~-~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~ 227 (260)
T PRK10744 179 LL-DEPCSALDPISTG-RIEELITELKQ-DYTVVIVTHNMQQAARCSDYTAF 227 (260)
T ss_pred EE-cCCCccCCHHHHH-HHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEE
Confidence 99 9999999998874 45578877753 23333344443344455676644
No 227
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.85 E-value=2.6e-21 Score=214.88 Aligned_cols=174 Identities=11% Similarity=0.100 Sum_probs=131.3
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------ceeeeecchh--------
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLR-------- 463 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~RigaveQl~-------- 463 (591)
+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++ .++|+++|..
T Consensus 267 ~l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGE--ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCc--EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 6899999999999 9999999999999999999999999999999998764 1389999974
Q ss_pred -hhhhhcccceeecC---CC----CCHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 464 -THARRLQVPIFEKG---YE----KDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 464 -~~~~~l~v~l~~~~---~~----~d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
+..+++.++..... ++ ......+.++++.+++. . .+..+.++||||+||+.||++|+ .+|+++||
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~-----~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM-----TRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHh-----hCCCEEEE
Confidence 12223322211000 01 11123456677776663 2 47788999999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+. .+.+.|..+...+.++.+.+|-+.-+..+||++..+
T Consensus 420 -DEPt~~LD~~~~~-~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l 468 (501)
T PRK10762 420 -DEPTRGVDVGAKK-EIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVM 468 (501)
T ss_pred -cCCCCCCCHhHHH-HHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 9999999999974 455888888765555555556655566677776554
No 228
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.1e-21 Score=196.31 Aligned_cols=176 Identities=19% Similarity=0.199 Sum_probs=126.4
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecch
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQL 462 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl 462 (591)
...+|++++|++.+|+ +++|+|+||+|||||+++|+|++.| ..|+|.+.+.++. ++++++|.
T Consensus 20 ~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 20 NFMAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred CEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 3468999999999999 9999999999999999999999986 6899999987752 38999987
Q ss_pred hhhh-----hhcccceeecCCCCCHHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 463 RTHA-----RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 463 ~~~~-----~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
..+. +++.+.........+....+.++++.+.+.. .+..+..+||||+|++.|+|+|. .+|+++|
T Consensus 98 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lll 172 (261)
T PRK14263 98 PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA-----TEPEVLL 172 (261)
T ss_pred CccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEE
Confidence 5432 2221111111111112234455555544321 13445679999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
| ||||+|||+..+.. +.+.|..+.. ..++.+.+|-+.-+..++|++..+
T Consensus 173 l-DEPtsgLD~~~~~~-l~~~l~~~~~-~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 173 L-DEPCSALDPIATRR-VEELMVELKK-DYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred E-eCCCccCCHHHHHH-HHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 9 99999999999754 4477777753 344455555555566667877655
No 229
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.3e-21 Score=193.53 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=125.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEccccc-----------ceeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDT-----------FRSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt-----------~RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.| +.|+|.+.+.++ .++++++|..
T Consensus 16 ~~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 16 KKAVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred ceeEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 458999999999999 9999999999999999999999874 789999998664 1388999875
Q ss_pred hhh-----hhcccceeecCCCCC--HHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 THA-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~~~~d--~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+. +++.+.......... ....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~-----~~p~ll 168 (250)
T PRK14262 94 TPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA-----VEPEVI 168 (250)
T ss_pred ccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh-----CCCCEE
Confidence 432 222211111111111 1122344454443321 35667889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.+ ..++.+.+|-+..+..++|++..+
T Consensus 169 ll-DEP~~~LD~~~~~-~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 169 LL-DEPTSALDPIATQ-RIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred EE-eCCccccCHHHHH-HHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEE
Confidence 99 9999999999874 45577877764 345555555555566677777543
No 230
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.85 E-value=2.9e-21 Score=215.08 Aligned_cols=174 Identities=13% Similarity=0.150 Sum_probs=131.9
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------ceeeeecchhh-------
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRT------- 464 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~RigaveQl~~------- 464 (591)
+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++ .++++++|.+.
T Consensus 278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGE--ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5899999999999 9999999999999999999999999999999988764 14899998641
Q ss_pred --hhhhcccceee-cCC--C-CCHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 465 --HARRLQVPIFE-KGY--E-KDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 465 --~~~~l~v~l~~-~~~--~-~d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
..+++....+. ... . ......+.++++.+++. . .+..+..+||||+||+.||++|+ .+|+++|| ||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~-----~~p~lLlL-DE 429 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLE-----ASPQLLIV-DE 429 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHh-----hCCCEEEE-CC
Confidence 12222111000 001 1 11223455667776664 2 46778899999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+|||+..+. .+.+.|.++...+.++.+.+|-+..+..+||++..|
T Consensus 430 Pt~gLD~~~~~-~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l 476 (510)
T PRK15439 430 PTRGVDVSARN-DIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM 476 (510)
T ss_pred CCcCcChhHHH-HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99999999974 455788888766556666667777777788887654
No 231
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.7e-21 Score=193.91 Aligned_cols=175 Identities=19% Similarity=0.242 Sum_probs=124.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..++++++|++.+|+ +++|+||||+|||||+++|+|++.+ +.|+|.+.|.++. ++++++|..
T Consensus 16 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14240 16 FQALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP 93 (250)
T ss_pred ceeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCC
Confidence 358999999999999 9999999999999999999998763 6899999987642 388999875
Q ss_pred hhh-----hhcccceeecCCCC--CHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 THA-----RRLQVPIFEKGYEK--DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~~~~--d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+. +++.+.....+... .....+.++++.+... ..+..+.++||||+|++.|+++|+ .+|+++
T Consensus 94 ~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ll 168 (250)
T PRK14240 94 NPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA-----VEPEVL 168 (250)
T ss_pred ccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 432 22211110011101 1123344445444321 124567789999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..|
T Consensus 169 ll-DEP~~~LD~~~~~-~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 169 LM-DEPTSALDPISTL-KIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEE
Confidence 99 9999999999975 45577877754 445555556555566667776543
No 232
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.9e-21 Score=221.33 Aligned_cols=176 Identities=16% Similarity=0.079 Sum_probs=132.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhh--h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~--~ 465 (591)
..+|++|+|++.+|+ +++|+|+||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|... +
T Consensus 337 ~~~l~~vs~~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 337 VHAVEKVSFDLWPGE--TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred eEEEeeeEeEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 458999999999999 99999999999999999999999999999999987641 4899999752 2
Q ss_pred hhhc------ccceeecCC-C-CCHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 466 ARRL------QVPIFEKGY-E-KDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 466 ~~~l------~v~l~~~~~-~-~d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
...+ ..++...+. . ......+.++++.+++. . .+..+..+||||+||+.||++|+ .+|+++|+ |
T Consensus 415 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~-----~~p~llll-D 488 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA-----LNPKVIIA-D 488 (623)
T ss_pred CCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 2222 111111111 1 11223455666666653 2 36778899999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+...+ +.|.++... +.++.+.+|-+.-+..+||++..+
T Consensus 489 EPts~LD~~~~~~i~-~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl 537 (623)
T PRK10261 489 EAVSALDVSIRGQII-NLLLDLQRDFGIAYLFISHDMAVVERISHRVAVM 537 (623)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999986544 777777654 445555556666667778887654
No 233
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=4.7e-21 Score=190.13 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=118.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~~l- 469 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++ .++++++|...+...-
T Consensus 17 ~~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 94 (221)
T cd03244 17 PPVLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTI 94 (221)
T ss_pred cccccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchH
Confidence 358999999999999 9999999999999999999999999999999998765 2389999976432210
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhhc--------CC----CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATRN--------GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~----d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
++.++.. ... ..+.++++.+.+. ++ +..+..+||||+|++.|+++|+ .+|+++|| |
T Consensus 95 ~enl~~~~~---~~~-~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~-----~~p~llll-D 164 (221)
T cd03244 95 RSNLDPFGE---YSD-EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL-----RKSKILVL-D 164 (221)
T ss_pred HHHhCcCCC---CCH-HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 1111111 111 2223333322211 11 2356789999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|||+|||+..+. .+.+.|..+.. ..++.+.+|-..-+.. +|++..
T Consensus 165 EP~~~LD~~~~~-~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~ 209 (221)
T cd03244 165 EATASVDPETDA-LIQKTIREAFK-DCTVLTIAHRLDTIID-SDRILV 209 (221)
T ss_pred CccccCCHHHHH-HHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEEEE
Confidence 999999999874 45577777653 2333333333334443 455443
No 234
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.85 E-value=4.1e-21 Score=193.80 Aligned_cols=174 Identities=18% Similarity=0.100 Sum_probs=119.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh--hcCCcEEEEcccccc----------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--~~~~G~V~i~~~Dt~----------RigaveQl~~~~~ 467 (591)
..+|++++|.+.+|+ +++|+||||+|||||+++|+|++ .|+.|+|.+.+.++. ++++++|......
T Consensus 14 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 14 KAILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred eeeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 458999999999999 99999999999999999999995 689999999987652 2888888754322
Q ss_pred hcc-----------cceeecCCCCC---HHHHHHHHHHHhhhc-CC-Ccchh-ccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 468 RLQ-----------VPIFEKGYEKD---PAIVAKEAIQEATRN-GS-DVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 468 ~l~-----------v~l~~~~~~~d---~~~~a~~al~~~~~~-~~-d~vli-DtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.+. +..+......+ ....+.+.++.+.+. ++ +..+. ++||||+|++.||++|+ .+|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~i 166 (248)
T PRK09580 92 GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV-----LEPEL 166 (248)
T ss_pred chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH-----cCCCE
Confidence 110 00000000001 122233444444332 22 33333 79999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc-CCcEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI-DDKHY 582 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i-~d~vG 582 (591)
+|| ||||+|||+..+ ..+.+.|..+...+.++.+.+|-..-++.+ +|++.
T Consensus 167 llL-DEPt~~LD~~~~-~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~ 217 (248)
T PRK09580 167 CIL-DESDSGLDIDAL-KIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH 217 (248)
T ss_pred EEE-eCCCccCCHHHH-HHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE
Confidence 999 999999999987 455577777765444444444443335554 56543
No 235
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7e-21 Score=192.87 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=125.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-----CcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-----~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|. .|+|.+.+.++. ++++++|..
T Consensus 17 ~~il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 17 HQVLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred eeEecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence 458999999999999 99999999999999999999999886 599999886642 389999975
Q ss_pred hh-----hhhcccceeecCCCC--CHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGYEK--DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~--d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++.+.....+... .....+.++++.+++. -.+..+..+||||+|++.|+|+|+ .+|+++
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ll 169 (251)
T PRK14249 95 NPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA-----IEPEVI 169 (251)
T ss_pred ccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 43 222222111111111 1112333444444321 135667889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|.++. .+.++.+.+|-+..+..++|++..|
T Consensus 170 lL-DEPt~~LD~~~~~-~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 170 LM-DEPCSALDPVSTM-RIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFL 219 (251)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEE
Confidence 99 9999999999874 4557887774 3344555555555667777877654
No 236
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=3.8e-21 Score=195.27 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=121.5
Q ss_pred cccccccccc-----cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcc----cc
Q 007747 402 ILRDVHAAKE-----QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ----VP 472 (591)
Q Consensus 402 iL~~is~~i~-----~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~----v~ 472 (591)
.+.++++.+. +|+ +++|+||||||||||+++|+|++.|+.|+|.+.+. ++++++|.......+. +.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge--~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---~i~~~~q~~~~~~~~tv~e~l~ 83 (246)
T cd03237 9 TLGEFTLEVEGGSISESE--VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---TVSYKPQYIKADYEGTVRDLLS 83 (246)
T ss_pred ccCcEEEEEecCCcCCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---eEEEecccccCCCCCCHHHHHH
Confidence 4556666664 688 99999999999999999999999999999998875 7889888643211111 11
Q ss_pred eeecCCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 473 IFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 473 l~~~~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
........ ....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||++||+..+. .+.
T Consensus 84 ~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~-----~~p~llll-DEPt~~LD~~~~~-~l~ 155 (246)
T cd03237 84 SITKDFYT-HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLS-----KDADIYLL-DEPSAYLDVEQRL-MAS 155 (246)
T ss_pred HHhhhccc-cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHHH-HHH
Confidence 11111111 1122345555555443 35777899999999999999999 99999999 9999999999875 455
Q ss_pred HHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 552 QKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 552 ~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+.|..+... +.++.+..|-+.-++.++|++..
T Consensus 156 ~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~ 188 (246)
T cd03237 156 KVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV 188 (246)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 777777543 45566666666667777787654
No 237
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.85 E-value=3.4e-21 Score=213.73 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=132.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-CCcEEEEcccccc----------eeeeecchhh---h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTF----------RSGAVEQLRT---H 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-~~G~V~i~~~Dt~----------RigaveQl~~---~ 465 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.| +.|+|.+.+.++. ++|+++|... +
T Consensus 273 ~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l 350 (500)
T TIGR02633 273 RKRVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGI 350 (500)
T ss_pred ccccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCc
Confidence 458999999999999 9999999999999999999999985 8999999886641 3899999752 2
Q ss_pred h------hhcccceeecC---CCCC---HHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 466 A------RRLQVPIFEKG---YEKD---PAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 466 ~------~~l~v~l~~~~---~~~d---~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
. +++.+..+... +... ....+.++++.+++.. .+..+.++||||+||+.||++|+ .+|+++
T Consensus 351 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~-----~~p~ll 425 (500)
T TIGR02633 351 VPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL-----TNPRVL 425 (500)
T ss_pred CCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh-----hCCCEE
Confidence 2 22222111000 1111 1234566777776642 36788899999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+.. +.+.|..+...+.++.+.+|-+.-+..+||++..+
T Consensus 426 lL-DEPt~~LD~~~~~~-l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 426 IL-DEPTRGVDVGAKYE-IYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVI 476 (500)
T ss_pred EE-cCCCCCcCHhHHHH-HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99 99999999998754 44778888766556666666666677777876554
No 238
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.8e-21 Score=183.48 Aligned_cols=142 Identities=20% Similarity=0.226 Sum_probs=106.0
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQV 471 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l~v 471 (591)
.++++++|++.+|+ +++|+||||+|||||++.|+|++.|..|+|.+.+.++. ++++++|...+..
T Consensus 16 ~~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~---- 89 (171)
T cd03228 16 PVLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS---- 89 (171)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc----
Confidence 58999999999999 99999999999999999999999999999999987652 2444444321100
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
.. +.+-+ +|||++|++.|+++|+ .+|+++|| ||||+|||+..+. .+.
T Consensus 90 -----------~t-~~e~l--------------LS~G~~~rl~la~al~-----~~p~llll-DEP~~gLD~~~~~-~l~ 136 (171)
T cd03228 90 -----------GT-IRENI--------------LSGGQRQRIAIARALL-----RDPPILIL-DEATSALDPETEA-LIL 136 (171)
T ss_pred -----------ch-HHHHh--------------hCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCcCCCHHHHH-HHH
Confidence 00 01100 9999999999999999 99999999 9999999999864 455
Q ss_pred HHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+.|..+.. ..++.+.+|-..-+.. +|++..
T Consensus 137 ~~l~~~~~-~~tii~~sh~~~~~~~-~d~~~~ 166 (171)
T cd03228 137 EALRALAK-GKTVIVIAHRLSTIRD-ADRIIV 166 (171)
T ss_pred HHHHHhcC-CCEEEEEecCHHHHHh-CCEEEE
Confidence 77777643 3344444444445554 555543
No 239
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.8e-21 Score=193.87 Aligned_cols=175 Identities=17% Similarity=0.222 Sum_probs=123.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-----CcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-----~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+ .|+|.+.+.++. ++|+++|..
T Consensus 17 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 17 KQAVKNVNLDVQRGT--VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred EEeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 468999999999999 99999999999999999999998864 799999886641 488999975
Q ss_pred hhhh------hcccceeecCCCCCH--HHHHHHHHHHhhh-----cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 464 THAR------RLQVPIFEKGYEKDP--AIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 464 ~~~~------~l~v~l~~~~~~~d~--~~~a~~al~~~~~-----~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.+.. ++...+......... ...+.+.++.+.. ...+..+..+||||+|++.|+++|+ .+|++
T Consensus 95 ~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~l 169 (252)
T PRK14272 95 NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA-----VEPEI 169 (252)
T ss_pred ccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCE
Confidence 4332 222111111110111 1223333333321 1235667889999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|| ||||+|+|+..+. .+.+.|..+.. ..++.+.+|-..-+..++|++..+
T Consensus 170 lll-DEP~~~LD~~~~~-~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14272 170 LLM-DEPTSALDPASTA-RIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFF 220 (252)
T ss_pred EEE-eCCCccCCHHHHH-HHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 999 9999999999874 55577877754 344555555555666667776543
No 240
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.3e-21 Score=194.20 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=123.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh--c---CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~--~---~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. | +.|+|.+.|.++. ++|+++|..
T Consensus 25 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 25 HHALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102 (259)
T ss_pred eeeEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence 468999999999999 999999999999999999999987 3 5899999887642 388999875
Q ss_pred hh-----hhhcccceeecCCC-CCH---HHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 464 TH-----ARRLQVPIFEKGYE-KDP---AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~-~d~---~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
.+ .+++... ...++ ... ...+.++++.+.+. ..+..+..+||||+|++.|+++|+ .+|+
T Consensus 103 ~~~~~tv~enl~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~-----~~p~ 175 (259)
T PRK14274 103 NPFPQSIFDNVAYG--PRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA-----TNPD 175 (259)
T ss_pred cccccCHHHHHHhH--HHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh-----cCCC
Confidence 33 2222111 11111 111 12334455554432 135667889999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..+
T Consensus 176 llll-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 176 VLLM-DEPTSALDPVSTR-KIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred EEEE-cCCcccCCHHHHH-HHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 9999 9999999999874 55578877754 333444444444445567776543
No 241
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.5e-21 Score=192.27 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=126.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|++.| ..|+|.+.+.++. ++|+++|..
T Consensus 17 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 17 KQALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred eeeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 458999999999999 9999999999999999999999875 7899999987752 389999976
Q ss_pred hhh-----hhcccceeecCCCC-C---HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 464 THA-----RRLQVPIFEKGYEK-D---PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~~~~-d---~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
.+. +++... ...++. . ....+.++++.+++. ..+..+.++||||+|++.|+++|+ .+|+
T Consensus 95 ~~~~~tv~enl~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ 167 (251)
T PRK14270 95 NPFPMSIYDNVAYG--PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA-----VKPD 167 (251)
T ss_pred CcCCCcHHHHHHhH--HHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCC
Confidence 432 222211 111111 1 123344556555432 135667899999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..|
T Consensus 168 llll-DEP~~~LD~~~~~-~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 168 VILM-DEPTSALDPISTL-KIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred EEEE-eCCcccCCHHHHH-HHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEE
Confidence 9999 9999999999874 45577877765 244445555555566677877554
No 242
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=8e-21 Score=180.07 Aligned_cols=169 Identities=21% Similarity=0.159 Sum_probs=134.2
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchh
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR 463 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~ 463 (591)
..+..||++|++.+.+|+ .++||||+||||||||..+||+-.|++|+|.+.|.+.+ ++|+|+|-.
T Consensus 20 ~~~l~IL~~V~L~v~~Ge--~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGE--TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCc--eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 456789999999999999 99999999999999999999999999999999998872 399999977
Q ss_pred hhhhhc------ccceeecCC-CCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 464 THARRL------QVPIFEKGY-EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 464 ~~~~~l------~v~l~~~~~-~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
.+..+| .+|+...+. ..++...+.+.++.+.+.. ...++..+|||+|||++|+|+++ ..|++++. |
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa-----~~P~vLfA-D 171 (228)
T COG4181 98 HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA-----GRPDVLFA-D 171 (228)
T ss_pred eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc-----CCCCEEec-c
Confidence 654444 556554442 3456667777777776644 47889999999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
|||-+||...-.+.. +.|- ...+.++.+.+++|.=-.+
T Consensus 172 EPTGNLD~~Tg~~ia-DLlF---~lnre~G~TlVlVTHD~~L 209 (228)
T COG4181 172 EPTGNLDRATGDKIA-DLLF---ALNRERGTTLVLVTHDPQL 209 (228)
T ss_pred CCCCCcchhHHHHHH-HHHH---HHhhhcCceEEEEeCCHHH
Confidence 999999987653222 3332 2234568888888864433
No 243
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.2e-21 Score=192.32 Aligned_cols=170 Identities=22% Similarity=0.190 Sum_probs=117.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l- 469 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|..|+|.+.+.++. ++|+++|...+...-
T Consensus 14 ~~~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 91 (236)
T cd03253 14 RPVLKDVSFTIPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTI 91 (236)
T ss_pred CceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchH
Confidence 348999999999999 99999999999999999999999999999999887652 388999876443210
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhh------c--C----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATR------N--G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~------~--~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
++.+... . ..... ...++..... . + .+..+..+|||++|++.|+++|+ .+|+++|| |
T Consensus 92 ~~nl~~~~~-~-~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~-----~~p~llll-D 162 (236)
T cd03253 92 GYNIRYGRP-D-ATDEE-VIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL-----KNPPILLL-D 162 (236)
T ss_pred HHHHhhcCC-C-CCHHH-HHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 1111111 1 11111 1121111111 0 1 12345689999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|||+|||+..+. .+.+.|..+.. +.++.+.+|-..-+.. +|++..
T Consensus 163 EP~~~LD~~~~~-~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~ 207 (236)
T cd03253 163 EATSALDTHTER-EIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIV 207 (236)
T ss_pred CCcccCCHHHHH-HHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEE
Confidence 999999999874 45577776654 4444444444444433 555543
No 244
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.7e-21 Score=220.15 Aligned_cols=176 Identities=17% Similarity=0.123 Sum_probs=128.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----------------------cee
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------------------FRS 456 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----------------------~Ri 456 (591)
..+|++|||++.+|+ +++||||||||||||+++|+|++.|+.|+|.+.+.+. .++
T Consensus 29 ~~~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i 106 (623)
T PRK10261 29 IAAVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM 106 (623)
T ss_pred eeEEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE
Confidence 468999999999999 9999999999999999999999999999998866311 148
Q ss_pred eeecchh--------hhhhhcccceee-cCCCC-CHHHHHHHHHHHhhhcC----CCcchhccchhHHHHHHHHHHHHhc
Q 007747 457 GAVEQLR--------THARRLQVPIFE-KGYEK-DPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKL 522 (591)
Q Consensus 457 gaveQl~--------~~~~~l~v~l~~-~~~~~-d~~~~a~~al~~~~~~~----~d~vliDtSGg~~qr~~LaraL~kl 522 (591)
|+|+|.. +..+++...+.. .+... +....+.++++.+++.. .+..+..+||||+||+.||++|+
T Consensus 107 g~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~-- 184 (623)
T PRK10261 107 AMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS-- 184 (623)
T ss_pred EEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh--
Confidence 9999964 122333222111 11111 11234555666665532 35678899999999999999999
Q ss_pred hhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 523 IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 523 ~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+|+++|| ||||++||+..+.. +.+.|..+... +.++.+.+|-+.-+..+||++..|
T Consensus 185 ---~~P~lLll-DEPt~~LD~~~~~~-l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 185 ---CRPAVLIA-DEPTTALDVTIQAQ-ILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred ---CCCCEEEE-eCCCCccCHHHHHH-HHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 99999999 99999999999855 44788887643 344444445445556677877654
No 245
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.4e-21 Score=192.17 Aligned_cols=174 Identities=20% Similarity=0.212 Sum_probs=122.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+|+||||||||++.|+|++. |..|+|.+.+.++. .+|+++|..
T Consensus 17 ~~~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 17 YEALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred eeeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence 468999999999999 999999999999999999999987 47999999987641 288888865
Q ss_pred hh-----hhhcccceeecCCC-CC-HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGYE-KD-PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~-~d-~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++...+...+.. .+ ....+.++++.+.+. ..+..+..+||||+|++.|+++|+ .+|+++
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~-----~~p~ll 169 (251)
T PRK14251 95 TPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA-----VRPKVV 169 (251)
T ss_pred ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 33 22222111000111 11 112334455554441 135677899999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|| ||||+|||+..+ ..+.+.|..+.. ..++.+.+|-+.-+..++|++..
T Consensus 170 ll-DEP~~~LD~~~~-~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~ 218 (251)
T PRK14251 170 LL-DEPTSALDPISS-SEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAF 218 (251)
T ss_pred Ee-cCCCccCCHHHH-HHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEE
Confidence 99 999999999986 455577777753 23344444444444455676644
No 246
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=4.7e-21 Score=196.53 Aligned_cols=175 Identities=19% Similarity=0.118 Sum_probs=127.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhh--h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~--~ 465 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|++|+|.+.+.++. ++|+++|... +
T Consensus 25 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 568999999999999 99999999999999999999999999999999987641 4889998752 2
Q ss_pred hhhcc------cceeecCCCCCH---HHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 466 ARRLQ------VPIFEKGYEKDP---AIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 466 ~~~l~------v~l~~~~~~~d~---~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
..... ..+ ......+. ...+.++++.++.. . .+..+..+||||+|++.|+++|+ .+|+++||
T Consensus 103 ~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~-----~~p~lllL- 175 (268)
T PRK10419 103 NPRKTVREIIREPL-RHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA-----VEPKLLIL- 175 (268)
T ss_pred CCCCCHHHHHHHHH-HhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 11111 111 00011111 22355566665543 1 35677889999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+. .+.+.|..+... +.++.+.+|-...+..++|++..|
T Consensus 176 DEPt~~LD~~~~~-~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 176 DEAVSNLDLVLQA-GVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred eCCCcccCHHHHH-HHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999998874 444777777653 344455555555555667766543
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.1e-20 Score=186.00 Aligned_cols=138 Identities=18% Similarity=0.203 Sum_probs=106.2
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh---cCCcEEEEcccccc--------eeeeecchhhhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTF--------RSGAVEQLRTHAR 467 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~---~~~G~V~i~~~Dt~--------RigaveQl~~~~~ 467 (591)
...+|++++|++.+|+ +++|+||||||||||+++|+|++. |+.|+|.+.+.++. ++++++|...+..
T Consensus 19 ~~~il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (202)
T cd03233 19 KIPILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFP 96 (202)
T ss_pred CceeeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCC
Confidence 4568999999999999 999999999999999999999998 88999999998752 3667776532222
Q ss_pred hcccceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 468 RLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 468 ~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
.+.+ .+.+.+......+..+.++||||+|++.|+++|+ .+|+++|| ||||+|+|+..+.
T Consensus 97 ~~tv---------------~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~-----~~p~llll-DEPt~~LD~~~~~ 155 (202)
T cd03233 97 TLTV---------------RETLDFALRCKGNEFVRGISGGERKRVSIAEALV-----SRASVLCW-DNSTRGLDSSTAL 155 (202)
T ss_pred CCcH---------------HHHHhhhhhhccccchhhCCHHHHHHHHHHHHHh-----hCCCEEEE-cCCCccCCHHHHH
Confidence 1111 1111110000145677899999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHHhhcC
Q 007747 548 SKFNQKLADLSSS 560 (591)
Q Consensus 548 ~~f~~~L~~l~~~ 560 (591)
.+.+.|..+...
T Consensus 156 -~~~~~l~~~~~~ 167 (202)
T cd03233 156 -EILKCIRTMADV 167 (202)
T ss_pred -HHHHHHHHHHHh
Confidence 455777777553
No 248
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=6.9e-21 Score=181.70 Aligned_cols=165 Identities=20% Similarity=0.246 Sum_probs=127.0
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------------------
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------------------- 453 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------------------- 453 (591)
.+....+|++||+....|. +|.|||.+||||||+|+||..+-.|+.|+|.+.+..+
T Consensus 15 ~~G~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred hcccchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 3456789999999999999 9999999999999999999999999999999988765
Q ss_pred ceeeeecchhhhhhhc-------ccceeecCCCCC-HHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchh
Q 007747 454 FRSGAVEQLRTHARRL-------QVPIFEKGYEKD-PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIY 524 (591)
Q Consensus 454 ~RigaveQl~~~~~~l-------~v~l~~~~~~~d-~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~ 524 (591)
.|.|.|+|...+-..+ ..|+...+..+. ..+.+...+...++.+ .+.++..+|||+|||++|||+|+
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLa---- 168 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALA---- 168 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHh----
Confidence 2478888865332222 345443333332 2244444444444433 36889999999999999999999
Q ss_pred cCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 525 ~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
.+|+++|| ||||+.|||.-.-+.+ +.+.++++++++. +++|.
T Consensus 169 -meP~vmLF-DEPTSALDPElVgEVL-kv~~~LAeEgrTM----v~VTH 210 (256)
T COG4598 169 -MEPEVMLF-DEPTSALDPELVGEVL-KVMQDLAEEGRTM----VVVTH 210 (256)
T ss_pred -cCCceEee-cCCcccCCHHHHHHHH-HHHHHHHHhCCeE----EEEee
Confidence 99999999 9999999998765555 7889999886544 45554
No 249
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=9.3e-21 Score=185.03 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=119.3
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc--c-------eeeeecchhhhh---
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--F-------RSGAVEQLRTHA--- 466 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt--~-------RigaveQl~~~~--- 466 (591)
...+|+++++.+.+|+ +.+|+||||+||||||+.|+|.+.|.+|+|.+.+.+. + +-+.++|...++
T Consensus 13 Gr~ll~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 13 GRRLLDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred cceeccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 3467899999999999 9999999999999999999999999999999999876 2 234555543221
Q ss_pred ---hhcccceeecCCCC---CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 467 ---RRLQVPIFEKGYEK---DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 467 ---~~l~v~l~~~~~~~---d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
+...+.......+. +...++..++......++ ..-.-.+|||+|||+.|+|.|+++.....-.-+||+||||+
T Consensus 91 tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPts 170 (259)
T COG4559 91 TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170 (259)
T ss_pred EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcc
Confidence 11111111111122 344667788887777776 35556789999999999999999876543333444499999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCC
Q 007747 540 GNDAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~ 561 (591)
.||...|...+ +..+++...+
T Consensus 171 aLDi~HQ~~tl-~laR~la~~g 191 (259)
T COG4559 171 ALDIAHQHHTL-RLARQLAREG 191 (259)
T ss_pred ccchHHHHHHH-HHHHHHHhcC
Confidence 99999998877 7788888765
No 250
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.84 E-value=1.1e-20 Score=188.30 Aligned_cols=171 Identities=20% Similarity=0.194 Sum_probs=120.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~---- 466 (591)
..+|++++|.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+.
T Consensus 27 ~~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 104 (226)
T cd03248 27 TLVLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSL 104 (226)
T ss_pred CccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhH
Confidence 358999999999999 99999999999999999999999999999999987641 389999976432
Q ss_pred -hhcccceeecCCCCCH-HHH-----HHHHHHHh--hhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 467 -RRLQVPIFEKGYEKDP-AIV-----AKEAIQEA--TRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 467 -~~l~v~l~~~~~~~d~-~~~-----a~~al~~~--~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
+++..... ...... ... +.+.++.+ +... .+..+..+||||+|++.|+++|. .+|+++|| ||
T Consensus 105 ~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll-DE 176 (226)
T cd03248 105 QDNIAYGLQ--SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI-----RNPQVLIL-DE 176 (226)
T ss_pred HHHhccccC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eC
Confidence 22211111 000000 000 12233333 2222 24567889999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||+|||+..+ ..+.+.|..+.. ..++.+.+|-..-+.. +|++..
T Consensus 177 Pt~~LD~~~~-~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i~~ 220 (226)
T cd03248 177 ATSALDAESE-QQVQQALYDWPE-RRTVLVIAHRLSTVER-ADQILV 220 (226)
T ss_pred CcccCCHHHH-HHHHHHHHHHcC-CCEEEEEECCHHHHHh-CCEEEE
Confidence 9999999997 456577777754 2333444444444443 555543
No 251
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.6e-21 Score=196.93 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=123.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. |+.|+|.+.|.++. ++|+++|..
T Consensus 52 ~~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 52 FEAVKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 458999999999999 999999999999999999999864 48999999886531 488999865
Q ss_pred hh-----hhhcccceeecCCCCC--HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d--~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++.+.....+.... ....+.++++.+.+. ..+..+..+||||+|++.|+++|+ .+|+++
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~-----~~p~ll 204 (286)
T PRK14275 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA-----VEPEIL 204 (286)
T ss_pred CCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 2222221110111111 122334455544331 235677899999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|.++.. ..++.+.+|-+.-+..++|++..|
T Consensus 205 lL-DEPt~gLD~~~~~-~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L 254 (286)
T PRK14275 205 LL-DEPTSALDPKATA-KIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFF 254 (286)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 99 9999999999874 45578877754 233444444444455567776543
No 252
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=5.6e-21 Score=213.55 Aligned_cols=175 Identities=15% Similarity=0.096 Sum_probs=127.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEccccc-------------ceeeeecc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDT-------------FRSGAVEQ 461 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt-------------~RigaveQ 461 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++| +.|+|.+.|.++ .++|+++|
T Consensus 22 ~~~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q 99 (529)
T PRK15134 22 RTVVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQ 99 (529)
T ss_pred eeeeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEec
Confidence 468999999999999 9999999999999999999999986 689999988764 13899999
Q ss_pred hhh--hhhhcc----cc--ee-ecCCCC-CHHHHHHHHHHHhhhcC----CCcchhccchhHHHHHHHHHHHHhchhcCC
Q 007747 462 LRT--HARRLQ----VP--IF-EKGYEK-DPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (591)
Q Consensus 462 l~~--~~~~l~----v~--l~-~~~~~~-d~~~~a~~al~~~~~~~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~ 527 (591)
... +...+. +. +. ..+... .....+.++++.+++.. .+..+.++||||+||+.||++|+ .+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~-----~~ 174 (529)
T PRK15134 100 EPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL-----TR 174 (529)
T ss_pred CchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHh-----cC
Confidence 753 111111 11 10 011111 12244566677666543 25678899999999999999999 99
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 528 PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|+++|| ||||++||+..+.. +.+.|.++..+ +.++.+..|-+.-+..++|++-.
T Consensus 175 p~llll-DEPt~~LD~~~~~~-l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~ 229 (529)
T PRK15134 175 PELLIA-DEPTTALDVSVQAQ-ILQLLRELQQELNMGLLFITHNLSIVRKLADRVAV 229 (529)
T ss_pred CCEEEE-cCCCCccCHHHHHH-HHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEE
Confidence 999999 99999999999754 55788887654 34444444555555566777644
No 253
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.8e-21 Score=193.67 Aligned_cols=175 Identities=17% Similarity=0.150 Sum_probs=126.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|++.| +.|+|.+.+.++. ++++++|..
T Consensus 20 ~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (259)
T PRK14260 20 SKAIEGISMDIYRNK--VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP 97 (259)
T ss_pred eEeecceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccc
Confidence 458999999999999 9999999999999999999999885 4799999987642 388998875
Q ss_pred hhh-----hhcccceeecC-CC-CCHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 THA-----RRLQVPIFEKG-YE-KDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~-~~-~d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+. +++...+.... +. ......+.++++.+.+. ..+..+..+|||++|++.|+++|+ .+|+++
T Consensus 98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ll 172 (259)
T PRK14260 98 NPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA-----IKPKVL 172 (259)
T ss_pred ccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 432 22211111111 11 11123344555544431 235667889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|+|+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..+
T Consensus 173 lL-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 173 LM-DEPCSALDPIATM-KVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred EE-cCCCccCCHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 99 9999999999874 45577777754 345555556666666677876555
No 254
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=192.88 Aligned_cols=175 Identities=15% Similarity=0.213 Sum_probs=124.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++. |+.|+|.+.|.++. ++|+++|..
T Consensus 33 ~~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 33 KEAIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110 (267)
T ss_pred eeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence 468999999999999 999999999999999999999986 47999999987641 389999964
Q ss_pred hh-----hhhcccceeecCCCCC--HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d--~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++.......+.... ....+.++++.+.+. ..+..+.++|||++|++.|+++|+ .+|+++
T Consensus 111 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~-----~~p~ll 185 (267)
T PRK14237 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA-----VKPDIL 185 (267)
T ss_pred ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 2332222111111111 112334445554432 135667889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|.++.. ..++.+.+|-..-+..+||++..|
T Consensus 186 lL-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 186 LM-DEPASALDPISTM-QLEETMFELKK-NYTIIIVTHNMQQAARASDYTAFF 235 (267)
T ss_pred EE-eCCcccCCHHHHH-HHHHHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEE
Confidence 99 9999999998864 45577877753 334444444444555667877554
No 255
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.9e-21 Score=211.46 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=131.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhh---hh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH---AR 467 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~---~~ 467 (591)
.+|++++|.+.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. .+|+++|.+.. ..
T Consensus 262 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCCc--EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 48999999999999 99999999999999999999999999999999987763 17889987531 11
Q ss_pred hcc---------cceeecCCC---C-CHHHHHHHHHHHhhhc--CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 468 RLQ---------VPIFEKGYE---K-DPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 468 ~l~---------v~l~~~~~~---~-d~~~~a~~al~~~~~~--~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
.+. +..+...++ . .....+.++++.+... ..+..+.++||||+|++.||++|+ .+|+++|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~-----~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL-----TQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh-----cCCCEEE
Confidence 111 111111111 1 1123345566665553 247888999999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
| ||||+|+|+..+.. +.+.+..+...+.++.+.+|-+.-+..+||++..+
T Consensus 415 L-DEPt~gLD~~~~~~-~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l 464 (491)
T PRK10982 415 L-DEPTRGIDVGAKFE-IYQLIAELAKKDKGIIIISSEMPELLGITDRILVM 464 (491)
T ss_pred E-cCCCcccChhHHHH-HHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEE
Confidence 9 99999999999754 44778777766556666666666677778887554
No 256
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.84 E-value=1e-20 Score=187.57 Aligned_cols=163 Identities=13% Similarity=0.106 Sum_probs=112.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~~~~ 466 (591)
..++++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++ ..+++++|...+.
T Consensus 14 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQ--LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 468999999999999 9999999999999999999999999999999987643 1388999876432
Q ss_pred hhc---ccceeecCCCCCHHHHHHHHHHHhhhc------------CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 467 RRL---QVPIFEKGYEKDPAIVAKEAIQEATRN------------GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 467 ~~l---~v~l~~~~~~~d~~~~a~~al~~~~~~------------~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
..- ++.+.. .. ... ...++++.+.+. ..+..+..+||||+|++.|+++|+ .+|+++
T Consensus 92 ~~t~~~nl~~~~-~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~il 162 (218)
T cd03290 92 NATVEENITFGS-PF--NKQ-RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY-----QNTNIV 162 (218)
T ss_pred cccHHHHHhhcC-cC--CHH-HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh-----hCCCEE
Confidence 110 111111 11 111 112222222211 013456789999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHH-HHHHhhcCCCCccceEEEeccc
Q 007747 532 LFVGEALVGNDAVDQLSKFNQ-KLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~-~L~~l~~~~~~~~it~IIlTK~ 574 (591)
|| ||||+|||+..+...++. .+..+...+.++.+.+|-.+-+
T Consensus 163 ll-DEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~ 205 (218)
T cd03290 163 FL-DDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL 205 (218)
T ss_pred EE-eCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH
Confidence 99 999999999987544431 5555554433444444443333
No 257
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=194.13 Aligned_cols=175 Identities=17% Similarity=0.225 Sum_probs=124.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++. |+.|+|.+.+.++. ++|+++|..
T Consensus 37 ~~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 37 DHALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 458999999999999 999999999999999999999987 58999999987652 389999975
Q ss_pred hh-----hhhcccceeecCCCCC-H-HHHHHHHHHHhhh----c-CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGYEKD-P-AIVAKEAIQEATR----N-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d-~-~~~a~~al~~~~~----~-~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++.+.......... . ...+.++++.+.. . ..+..+..+|||++|++.|+++|+ .+|+++
T Consensus 115 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~-----~~p~ll 189 (271)
T PRK14238 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA-----IEPDVI 189 (271)
T ss_pred ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH-----cCCCEE
Confidence 32 2332221111111111 1 1222333333211 1 125667889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+.-+..++|++..|
T Consensus 190 lL-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l 239 (271)
T PRK14238 190 LM-DEPTSALDPISTL-KVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFF 239 (271)
T ss_pred EE-eCCCCcCCHHHHH-HHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 99 9999999999974 45577877765 344455555555566677877554
No 258
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.3e-21 Score=194.57 Aligned_cols=183 Identities=17% Similarity=0.177 Sum_probs=126.3
Q ss_pred HHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcc------ccc---------cee
Q 007747 392 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA------CDT---------FRS 456 (591)
Q Consensus 392 ~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~------~Dt---------~Ri 456 (591)
++........+|++++|.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.| .++ .++
T Consensus 15 ~~~~~~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i 92 (257)
T PRK14246 15 RLYLYINDKAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV 92 (257)
T ss_pred eEEEecCCceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcce
Confidence 33333345568999999999999 9999999999999999999999999886665554 443 238
Q ss_pred eeecchhhhhh------hcccceeecCCCC-C-HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhch
Q 007747 457 GAVEQLRTHAR------RLQVPIFEKGYEK-D-PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLI 523 (591)
Q Consensus 457 gaveQl~~~~~------~l~v~l~~~~~~~-d-~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~ 523 (591)
++++|...+.. ++.+.....+... + ....+.++++.++.. ..+..+.++||||+|++.|+++|+
T Consensus 93 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~--- 169 (257)
T PRK14246 93 GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA--- 169 (257)
T ss_pred EEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH---
Confidence 89998754322 2222211111111 1 113345555555542 135677889999999999999999
Q ss_pred hcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 524 ~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+|+++|| ||||+|||+..+ ..+.+.|..+.. ..++.+.+|-..-+..++|++..+
T Consensus 170 --~~P~llll-DEPt~~LD~~~~-~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l 225 (257)
T PRK14246 170 --LKPKVLLM-DEPTSMIDIVNS-QAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFL 225 (257)
T ss_pred --cCCCEEEE-cCCCccCCHHHH-HHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEE
Confidence 99999999 999999999987 455577777754 344444444444444556766543
No 259
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=6.3e-21 Score=212.63 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=129.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc-ccc---c------------ceeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-ACD---T------------FRSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~-~~D---t------------~RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+. +.+ + .++|+++|..
T Consensus 297 ~~il~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 297 VKAVDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred ceEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence 458999999999999 999999999999999999999999999999995 421 1 2489999965
Q ss_pred hhhhh------cccceeecCCCCC-HHHHHHHHHHHhhhcC------CCcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 464 THARR------LQVPIFEKGYEKD-PAIVAKEAIQEATRNG------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 464 ~~~~~------l~v~l~~~~~~~d-~~~~a~~al~~~~~~~------~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.+... +...+. ...... ....+.++++.+++.. .+..+..+||||+||+.||++|+ .+|++
T Consensus 375 ~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p~l 448 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI-----KEPRI 448 (520)
T ss_pred ccCCCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCE
Confidence 33222 221110 011111 1234455666666543 36778899999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|| ||||+|||+..+. .+.+.|..+... +.++.+.+|-+..+..++|++..|
T Consensus 449 Lll-DEPt~~LD~~~~~-~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l 501 (520)
T TIGR03269 449 VIL-DEPTGTMDPITKV-DVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALM 501 (520)
T ss_pred EEE-eCCcccCCHHHHH-HHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 9999999999974 455777777653 455566666666666777876544
No 260
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.1e-20 Score=189.35 Aligned_cols=176 Identities=18% Similarity=0.177 Sum_probs=124.7
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEccccc-----------ceeeeecch
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDT-----------FRSGAVEQL 462 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt-----------~RigaveQl 462 (591)
...+|++++|++.+|+ +++|+||||+|||||+++|+|++. |..|+|.+.+.++ .++|+++|.
T Consensus 17 ~~~~l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 94 (251)
T PRK14244 17 SKQILFDINLDIYKRE--VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQK 94 (251)
T ss_pred CeeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecC
Confidence 3468999999999999 999999999999999999999986 4689999988654 138899997
Q ss_pred hhh-----hhhcccceeecCCCCC---HHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 463 RTH-----ARRLQVPIFEKGYEKD---PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 463 ~~~-----~~~l~v~l~~~~~~~d---~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
..+ .+++.+.......... ....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+
T Consensus 95 ~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ 169 (251)
T PRK14244 95 PNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA-----VKPT 169 (251)
T ss_pred cccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh-----cCCC
Confidence 532 2222211100111111 1123344555554432 24567789999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++|| ||||+|||+..+. .+.+.|..+.. +.++.+.+|-+.-+..++|++..|
T Consensus 170 llll-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 170 MLLM-DEPCSALDPVATN-VIENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred EEEE-eCCCccCCHHHHH-HHHHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEE
Confidence 9999 9999999999874 45577877753 444555555555555667776543
No 261
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=1.4e-20 Score=185.18 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=107.4
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhhhc--
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL-- 469 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~~l-- 469 (591)
.++++++|.+.+|+ +++|+||||+|||||++.|+|++.|..|+|.+.+.++ .++++++|...+...-
T Consensus 22 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (207)
T cd03369 22 PVLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR 99 (207)
T ss_pred ccccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence 58999999999999 9999999999999999999999999999999998764 2489999976432210
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 470 -QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 470 -~v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
++.++. . ... ..+.++++ .+..+..+|||++|++.|+|+|+ .+|+++|| ||||+|||+..+.
T Consensus 100 ~~l~~~~-~--~~~-~~~~~~l~------~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEP~~~LD~~~~~- 162 (207)
T cd03369 100 SNLDPFD-E--YSD-EEIYGALR------VSEGGLNLSQGQRQLLCLARALL-----KRPRVLVL-DEATASIDYATDA- 162 (207)
T ss_pred HHhcccC-C--CCH-HHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHh-----hCCCEEEE-eCCcccCCHHHHH-
Confidence 111111 1 111 11222222 45567889999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHhh
Q 007747 549 KFNQKLADLS 558 (591)
Q Consensus 549 ~f~~~L~~l~ 558 (591)
.+.+.|.++.
T Consensus 163 ~l~~~l~~~~ 172 (207)
T cd03369 163 LIQKTIREEF 172 (207)
T ss_pred HHHHHHHHhc
Confidence 4557777664
No 262
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=194.13 Aligned_cols=175 Identities=18% Similarity=0.189 Sum_probs=123.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.+ ..|+|.+.+.++. ++++++|..
T Consensus 38 ~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 38 KQALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115 (272)
T ss_pred eeEeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence 458999999999999 9999999999999999999999873 7999999987642 488998865
Q ss_pred hh-----hhhcccceeecCC-CCC-HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGY-EKD-PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~-~~d-~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++.+.....+. ... ....+.++++.+++. ..+..+..+|||++|++.|+++|+ .+|+++
T Consensus 116 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ll 190 (272)
T PRK14236 116 NPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA-----IEPEVL 190 (272)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH-----CCCCEE
Confidence 32 2332221110110 111 123344555554432 134667889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+..+..++|++..+
T Consensus 191 lL-DEPt~gLD~~~~~-~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 191 LL-DEPTSALDPISTL-KIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred EE-eCCcccCCHHHHH-HHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence 99 9999999999874 55577877764 333333334334445567776554
No 263
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.84 E-value=1.7e-20 Score=183.39 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=112.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh--hcCCcEEEEcccccc------eeeeecchhhhhhhccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF------RSGAVEQLRTHARRLQV 471 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--~~~~G~V~i~~~Dt~------RigaveQl~~~~~~l~v 471 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++ .|..|+|.+.+.++. ++++++|...+...+
T Consensus 22 ~~~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~-- 97 (194)
T cd03213 22 KQLLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTL-- 97 (194)
T ss_pred ccceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCC--
Confidence 458999999999999 99999999999999999999999 999999999988752 366666643211111
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
. +.+.+.+... +..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+. .+.
T Consensus 98 ---------t----~~~~i~~~~~------~~~LS~G~~qrv~laral~-----~~p~illl-DEP~~~LD~~~~~-~l~ 151 (194)
T cd03213 98 ---------T----VRETLMFAAK------LRGLSGGERKRVSIALELV-----SNPSLLFL-DEPTSGLDSSSAL-QVM 151 (194)
T ss_pred ---------c----HHHHHHHHHH------hccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCCcCCCHHHHH-HHH
Confidence 0 1111111110 1189999999999999999 99999999 9999999999874 455
Q ss_pred HHHHHhhcCCCCccceEEEec-cccccCCcEEEE
Q 007747 552 QKLADLSSSPNPQLIDGILLT-KFDTIDDKHYQW 584 (591)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlT-K~D~i~d~vGal 584 (591)
+.|..+...+.++.+.+|-+. .+..++|++..+
T Consensus 152 ~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 152 SLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL 185 (194)
T ss_pred HHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEE
Confidence 777777654444444444432 233446766543
No 264
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=4.4e-21 Score=237.30 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=140.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~- 470 (591)
..+|++++|.+.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+...+.
T Consensus 1952 ~~aL~~ISf~I~~GE--i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGE--CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCc--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 469999999999999 99999999999999999999999999999999998762 3899999764443331
Q ss_pred ---cceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 471 ---VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 471 ---v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+.++...++.. ....+.++++.+++..+ +..+..+||||+||+.+|++|+ .+|+++|| ||||+|+|+
T Consensus 2030 ~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi-----~~P~VLLL-DEPTsGLDp 2103 (2272)
T TIGR01257 2030 REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALI-----GCPPLVLL-DEPTTGMDP 2103 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCCCCCH
Confidence 22222212211 12344556666665543 6778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+.. +.+.|..+...++++.+++|.+..++.+||+++.+
T Consensus 2104 ~sr~~-l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL 2143 (2272)
T TIGR01257 2104 QARRM-LWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIM 2143 (2272)
T ss_pred HHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99854 44788888766777888889888899999998764
No 265
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1e-20 Score=182.62 Aligned_cols=152 Identities=23% Similarity=0.266 Sum_probs=121.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----eeeeecchhhhhhhc----cc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RSGAVEQLRTHARRL----QV 471 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----RigaveQl~~~~~~l----~v 471 (591)
..+|+++|+.+.+|+ .++++||+||||||+|+.+||+..|..|+|.+++..+- +-|.|+|...+...+ |+
T Consensus 18 ~~~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNv 95 (259)
T COG4525 18 RSALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNV 95 (259)
T ss_pred hhhhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHH
Confidence 458999999999999 99999999999999999999999999999999987663 568899976544333 33
Q ss_pred ceeecCCCCCHH---HHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 472 PIFEKGYEKDPA---IVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 472 ~l~~~~~~~d~~---~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
.|-....+.+.+ .++.+.+...++.++ +..+..+||||+||+.+||||+ .+|+++|| |||+..+|+..+
T Consensus 96 afgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa-----~eP~~LlL-DEPfgAlDa~tR- 168 (259)
T COG4525 96 AFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALA-----VEPQLLLL-DEPFGALDALTR- 168 (259)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhh-----cCcceEee-cCchhhHHHHHH-
Confidence 332222233333 445555666677776 5788999999999999999999 99999999 999999999986
Q ss_pred HHHHHHHHHhhcC
Q 007747 548 SKFNQKLADLSSS 560 (591)
Q Consensus 548 ~~f~~~L~~l~~~ 560 (591)
+.++..|-++-+.
T Consensus 169 e~mQelLldlw~~ 181 (259)
T COG4525 169 EQMQELLLDLWQE 181 (259)
T ss_pred HHHHHHHHHHHHH
Confidence 5566777776543
No 266
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=190.67 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=121.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEcccccc----------eeeeecchhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF----------RSGAVEQLRT 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt~----------RigaveQl~~ 464 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.| ..|+|.+.+.++. ++|+++|...
T Consensus 16 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 16 NQALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred eeeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 458999999999999 9999999999999999999999886 4899999886641 3889998754
Q ss_pred hh-----hhcccceeecCCCCCH--HHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 465 HA-----RRLQVPIFEKGYEKDP--AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 465 ~~-----~~l~v~l~~~~~~~d~--~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
+. +++.+........... ...+.++++.++.. ..+..+..+|||++|++.|+++|+ .+|+++|
T Consensus 94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lll 168 (249)
T PRK14253 94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA-----MEPDVIL 168 (249)
T ss_pred cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH-----cCCCEEE
Confidence 32 2222111100101111 12233444443321 124566789999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
| ||||+|||+..+. .+.+.|.++... .++.+.+|-..-+..++|++..|
T Consensus 169 l-DEP~~~LD~~~~~-~l~~~l~~~~~~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 169 M-DEPTSALDPIATH-KIEELMEELKKN-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred E-eCCCccCCHHHHH-HHHHHHHHHhcC-CeEEEEecCHHHHHHhCCEEEEE
Confidence 9 9999999999874 555788887642 33444444444445567776543
No 267
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=6.8e-21 Score=212.84 Aligned_cols=175 Identities=14% Similarity=0.094 Sum_probs=129.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhh--h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~--~ 465 (591)
..+|++|||++.+|+ +++|+||||||||||+++|+|++ |..|+|.+.|.++. ++|+++|... +
T Consensus 299 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 468999999999999 99999999999999999999998 48999999986641 3899999752 2
Q ss_pred ------hhhcccceeecC--CC-CCHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 466 ------ARRLQVPIFEKG--YE-KDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 466 ------~~~l~v~l~~~~--~~-~d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
.+++..++.... .. .+....+.++++.+++. . .+..+.++||||+||+.||++|+ .+|+++||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~llll- 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALI-----LKPSLIIL- 449 (529)
T ss_pred CCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHh-----CCCCEEEe-
Confidence 222222211110 11 11223455666666653 2 36778899999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+.. +.+.|.++... +.++.+.+|-+.-+..+||++..|
T Consensus 450 DEPt~~LD~~~~~~-l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l 499 (529)
T PRK15134 450 DEPTSSLDKTVQAQ-ILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVL 499 (529)
T ss_pred eCCccccCHHHHHH-HHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 99999999999854 44778877654 455566666666666677776543
No 268
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=1.1e-20 Score=184.49 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=108.4
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-----eeeeecchhhh------hhhcc
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----RSGAVEQLRTH------ARRLQ 470 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-----RigaveQl~~~------~~~l~ 470 (591)
++ +++|++++|+ +++|+|+||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|...+ .+++.
T Consensus 16 l~-~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 92 (195)
T PRK13541 16 LF-DLSITFLPSA--ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92 (195)
T ss_pred EE-EEEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHH
Confidence 44 4999999999 99999999999999999999999999999999998752 37788775422 22221
Q ss_pred cceeecCCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 471 VPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 471 v~l~~~~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
+....+. ....+.++++.+.... .+..+.++|||++|++.++++|+ .+|+++|| ||||+|+|+..+ ..
T Consensus 93 --~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~-----~~p~~lll-DEP~~~LD~~~~-~~ 161 (195)
T PRK13541 93 --FWSEIYN--SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIA-----CQSDLWLL-DEVETNLSKENR-DL 161 (195)
T ss_pred --HHHHhcc--cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHH-HH
Confidence 1111111 1223444555554433 35677899999999999999999 99999999 999999999986 44
Q ss_pred HHHHHHHhhcC
Q 007747 550 FNQKLADLSSS 560 (591)
Q Consensus 550 f~~~L~~l~~~ 560 (591)
+.+.+......
T Consensus 162 l~~~l~~~~~~ 172 (195)
T PRK13541 162 LNNLIVMKANS 172 (195)
T ss_pred HHHHHHHHHhC
Confidence 55666655443
No 269
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.84 E-value=1e-20 Score=185.70 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=114.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhh--hhcCCcEEEEcccccc----------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~--l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~ 467 (591)
..++++++|++.+|+ +++|+|+||+|||||++.|+|+ +.|+.|+|.+.+.++. ++++++|......
T Consensus 13 ~~~l~~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (200)
T cd03217 13 KEILKGVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90 (200)
T ss_pred EEeeeccceEECCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc
Confidence 458999999999999 9999999999999999999999 4789999999987652 2666666543211
Q ss_pred hcccceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 468 RLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 468 ~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
.+ .+.+.+ +.....+||||+|++.|+++|+ .+|+++|| ||||+|+|+..+
T Consensus 91 ~~---------------~~~~~l--------~~~~~~LS~G~~qrv~laral~-----~~p~illl-DEPt~~LD~~~~- 140 (200)
T cd03217 91 GV---------------KNADFL--------RYVNEGFSGGEKKRNEILQLLL-----LEPDLAIL-DEPDSGLDIDAL- 140 (200)
T ss_pred Cc---------------cHHHHH--------hhccccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCccCCHHHH-
Confidence 10 011111 1122479999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHhhcCCCCccceEEEeccccc-cCCcEEE
Q 007747 548 SKFNQKLADLSSSPNPQLIDGILLTKFDT-IDDKHYQ 583 (591)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~D~-i~d~vGa 583 (591)
..|.+.|..+...+.++.+.+|-..-++. .+|++..
T Consensus 141 ~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~ 177 (200)
T cd03217 141 RLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHV 177 (200)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEE
Confidence 45568888876554555555555555554 4676644
No 270
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.84 E-value=1.1e-20 Score=191.34 Aligned_cols=175 Identities=16% Similarity=0.142 Sum_probs=119.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhh--hhcCCcEEEEcccccc----------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~--l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~ 467 (591)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|+ +.|+.|+|.+.+.++. .+++++|...+..
T Consensus 20 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 97 (252)
T CHL00131 20 NEILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIP 97 (252)
T ss_pred EEeeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccc
Confidence 358999999999999 9999999999999999999997 5789999999887652 2567777643222
Q ss_pred ------hcccceeec----CCC-CCH---HHHHHHHHHHhhhc-C-CCcchh-ccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 468 ------RLQVPIFEK----GYE-KDP---AIVAKEAIQEATRN-G-SDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 468 ------~l~v~l~~~----~~~-~d~---~~~a~~al~~~~~~-~-~d~vli-DtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
++...+... ... ... ...+.++++.+++. . .+..+. .+||||+|++.|+++|+ .+|++
T Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~l 172 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMAL-----LDSEL 172 (252)
T ss_pred cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHH-----cCCCE
Confidence 111111000 000 011 12334555555543 1 345565 59999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc-CCcEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI-DDKHYQ 583 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i-~d~vGa 583 (591)
+|| ||||+|||+..+. .+.+.|..+...+.++.+.+|-..-+..+ +|++..
T Consensus 173 lll-DEPt~~LD~~~~~-~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~ 224 (252)
T CHL00131 173 AIL-DETDSGLDIDALK-IIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHV 224 (252)
T ss_pred EEE-cCCcccCCHHHHH-HHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEE
Confidence 999 9999999999874 45577777765433333333333333333 565543
No 271
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=1.2e-20 Score=182.73 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=105.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
..++.++ +.+++|+ +++|+||||||||||+++|+|++.|++|+|.+.+.+ +++++|...
T Consensus 13 ~~~l~~~-~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---i~~~~q~~~--------------- 71 (177)
T cd03222 13 FFLLVEL-GVVKEGE--VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PVYKPQYID--------------- 71 (177)
T ss_pred EEEEccC-cEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---EEEEcccCC---------------
Confidence 4567774 8899999 999999999999999999999999999999998754 556555211
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
+||||+|++.++++|+ .+|+++|| ||||+++|+..+. .+.+.+..+..
T Consensus 72 -------------------------LSgGq~qrv~laral~-----~~p~lllL-DEPts~LD~~~~~-~l~~~l~~~~~ 119 (177)
T cd03222 72 -------------------------LSGGELQRVAIAAALL-----RNATFYLF-DEPSAYLDIEQRL-NAARAIRRLSE 119 (177)
T ss_pred -------------------------CCHHHHHHHHHHHHHh-----cCCCEEEE-ECCcccCCHHHHH-HHHHHHHHHHH
Confidence 9999999999999999 99999999 9999999999874 45577777755
Q ss_pred CC-CCccceEEEeccccccCCcEEE
Q 007747 560 SP-NPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 560 ~~-~~~~it~IIlTK~D~i~d~vGa 583 (591)
.. .++.+.+|-+.-+..++|++..
T Consensus 120 ~~~~tiiivsH~~~~~~~~~d~i~~ 144 (177)
T cd03222 120 EGKKTALVVEHDLAVLDYLSDRIHV 144 (177)
T ss_pred cCCCEEEEEECCHHHHHHhCCEEEE
Confidence 43 4555555655556666776644
No 272
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=190.80 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=122.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh--hc---CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQ---HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--~~---~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||+++|+|++ .| +.|+|.+.|.++. .+|+++|..
T Consensus 18 ~~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 95 (252)
T PRK14239 18 KKALNSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95 (252)
T ss_pred eeeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCC
Confidence 458999999999999 99999999999999999999985 36 4899999987641 388999875
Q ss_pred hhh-----hhcccceeecCCCCC--HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 THA-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~~~~d--~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+. +++.......+.... ....+.++++.+... ..+..+.++|||++|++.|+++|+ .+|+++
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ll 170 (252)
T PRK14239 96 NPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA-----TSPKII 170 (252)
T ss_pred ccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 432 222211110111111 112334444444321 135667889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.. ..++.+.+|-+..+..++|++..+
T Consensus 171 ll-DEPt~~LD~~~~~-~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 171 LL-DEPTSALDPISAG-KIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred EE-cCCccccCHHHHH-HHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEE
Confidence 99 9999999999874 45577777754 244444444444555667776543
No 273
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=9.7e-21 Score=211.13 Aligned_cols=176 Identities=16% Similarity=0.138 Sum_probs=127.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh--hcCCcEEEEc-----------------------ccc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMA-----------------------ACD-- 452 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--~~~~G~V~i~-----------------------~~D-- 452 (591)
..+|++++|++.+|+ +++|+|||||||||||+.|+|++ .|+.|+|.+. |.+
T Consensus 13 ~~~l~~is~~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 90 (520)
T TIGR03269 13 KEVLKNISFTIEEGE--VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLE 90 (520)
T ss_pred eEeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccc
Confidence 468999999999999 99999999999999999999997 6899999986 211
Q ss_pred -----c------------ceeeeecch-hhh------hhhcccceeecCCCC-CHHHHHHHHHHHhhhcCC-Ccchhccc
Q 007747 453 -----T------------FRSGAVEQL-RTH------ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTA 506 (591)
Q Consensus 453 -----t------------~RigaveQl-~~~------~~~l~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtS 506 (591)
. .++|+++|. ..+ .+++..++...+... .....+.++++.+++... +..+.++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 170 (520)
T TIGR03269 91 PEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLS 170 (520)
T ss_pred ccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCC
Confidence 1 138999995 322 222222221111111 112345556666665433 56788999
Q ss_pred hhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 507 GRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 507 Gg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+||+.||++|+ .+|+++|| ||||++||+..+.. +.+.|.++... +.++.+..|-+.-+..+||++..|
T Consensus 171 gGq~qrv~iA~al~-----~~p~lllL-DEPt~~LD~~~~~~-l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l 242 (520)
T TIGR03269 171 GGEKQRVVLARQLA-----KEPFLFLA-DEPTGTLDPQTAKL-VHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWL 242 (520)
T ss_pred HHHHHHHHHHHHHh-----cCCCEEEe-eCCcccCCHHHHHH-HHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 99999999999999 99999999 99999999999754 44777777543 455556666666667777876543
No 274
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=192.47 Aligned_cols=176 Identities=20% Similarity=0.202 Sum_probs=127.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-----CcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-----~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++.|. .|+|.+.+.++. .+++++|..
T Consensus 20 ~~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 20 QKILEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP 97 (261)
T ss_pred eeEeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCC
Confidence 358999999999999 99999999999999999999999885 799999887641 278888864
Q ss_pred hh-----hhhcccceeecCC-C-CCHHHHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGY-E-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~-~-~d~~~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++.......+. . .+....+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++
T Consensus 98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p~vl 172 (261)
T PRK14258 98 NLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA-----VKPKVL 172 (261)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 33 2222211111111 1 111233445555554321 25667789999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhc-CCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSS-SPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~-~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|+|+..+. .+.+.|..+.. .+.++.+.+|-+.-+..++|++..+
T Consensus 173 lL-DEP~~~LD~~~~~-~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l 224 (261)
T PRK14258 173 LM-DEPCFGLDPIASM-KVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224 (261)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 99 9999999999874 45577777654 3556666667677777778877543
No 275
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=8.9e-21 Score=208.99 Aligned_cols=175 Identities=19% Similarity=0.172 Sum_probs=126.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce---eeeecchhhhhhhcccceeec
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVEQLRTHARRLQVPIFEK 476 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R---igaveQl~~~~~~l~v~l~~~ 476 (591)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+.+.+. .+..+++ +..+++.+.....
T Consensus 37 ~~IL~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~l-TV~EnL~l~~~~~ 113 (549)
T PRK13545 37 HYALNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQL-TGIENIELKGLMM 113 (549)
T ss_pred ceEEeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCC-cHHHHHHhhhhhc
Confidence 358999999999999 999999999999999999999999999999998876321 1111221 2333332211101
Q ss_pred CCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q 007747 477 GYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (591)
Q Consensus 477 ~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L 554 (591)
+... .....+.++++.+.+... +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+. .+.+.|
T Consensus 114 ~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~-----~~P~LLLL-DEPTsgLD~~sr~-~LlelL 186 (549)
T PRK13545 114 GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVH-----INPDILVI-DEALSVGDQTFTK-KCLDKM 186 (549)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCcccCCHHHHH-HHHHHH
Confidence 1111 111234455665555433 6778899999999999999999 99999999 9999999999874 455778
Q ss_pred HHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 555 ADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+...+.++.+.+|-+.-+..+||++..|
T Consensus 187 ~el~~~G~TIIIVSHdl~~i~~l~DrIivL 216 (549)
T PRK13545 187 NEFKEQGKTIFFISHSLSQVKSFCTKALWL 216 (549)
T ss_pred HHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 777665556666666666677778887654
No 276
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.83 E-value=1.4e-20 Score=193.12 Aligned_cols=175 Identities=17% Similarity=0.124 Sum_probs=120.7
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---eeeeecchhhhhhhccccee
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---RSGAVEQLRTHARRLQVPIF 474 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---RigaveQl~~~~~~l~v~l~ 474 (591)
....+|++++|++.+|+ +++|+||||+|||||+++|+|++.|..|+|.+.+...+ ..+...++ +..+++.....
T Consensus 35 ~~~~il~~is~~i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~-tv~enl~~~~~ 111 (264)
T PRK13546 35 KTFFALDDISLKAYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQL-TGIENIEFKML 111 (264)
T ss_pred CceEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCC-cHHHHHHHHHH
Confidence 44678999999999999 99999999999999999999999999999999874211 11111111 22333221111
Q ss_pred ecCCCCCHH---HHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHH
Q 007747 475 EKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 475 ~~~~~~d~~---~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
. ++.... ..+..+++.+.+.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+. .+
T Consensus 112 ~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~-----~~p~iLlL-DEPt~gLD~~~~~-~l 182 (264)
T PRK13546 112 C--MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINIT-----VNPDILVI-DEALSVGDQTFAQ-KC 182 (264)
T ss_pred H--cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHh-----hCCCEEEE-eCccccCCHHHHH-HH
Confidence 1 111222 22233444443332 25677889999999999999999 99999999 9999999998864 45
Q ss_pred HHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+.|.++...+.++.+.+|-+..+..+++++..+
T Consensus 183 ~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l 216 (264)
T PRK13546 183 LDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWI 216 (264)
T ss_pred HHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEE
Confidence 5777777655445555555555666667776443
No 277
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.83 E-value=1.6e-20 Score=186.53 Aligned_cols=170 Identities=12% Similarity=-0.011 Sum_probs=115.6
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEE-Ecccccceeeeecchh---hhhhhcccceeecC
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-MAACDTFRSGAVEQLR---THARRLQVPIFEKG 477 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~-i~~~Dt~RigaveQl~---~~~~~l~v~l~~~~ 477 (591)
+|++|+|++++|+ +++|+||||||||||+++|+|++.|+.|+|. +.+... .++...++. +..+++.+. ...
T Consensus 2 vl~~vs~~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~~~~~l~~~ltv~enl~~~--~~~ 76 (213)
T PRK15177 2 VLDKTDFVMGYHE--HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLGANSFILPGLTGEENARMM--ASL 76 (213)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccccccccCCcCcHHHHHHHH--HHH
Confidence 6899999999999 9999999999999999999999999999997 655432 222211111 223333221 111
Q ss_pred CCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q 007747 478 YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (591)
Q Consensus 478 ~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~ 556 (591)
++.+.......+...+.+.. .+..+.++||||+|++.|+++|+ .+|+++|| |||++++|+..+.. +.+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~-----~~p~llll-DEP~~~lD~~~~~~-~~~~l~~ 149 (213)
T PRK15177 77 YGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLL-----LPCRLYIA-DGKLYTGDNATQLR-MQAALAC 149 (213)
T ss_pred cCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHh-----cCCCEEEE-CCCCccCCHHHHHH-HHHHHHH
Confidence 22233322222223333322 36778899999999999999999 99999999 99999999998754 3344433
Q ss_pred hhcCCCCccceEEEeccccccCCcEEEE
Q 007747 557 LSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 557 l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.... .++.+.+|.+.-+..++|++..+
T Consensus 150 ~~~~-~~ii~vsH~~~~~~~~~d~i~~l 176 (213)
T PRK15177 150 QLQQ-KGLIVLTHNPRLIKEHCHAFGVL 176 (213)
T ss_pred HhhC-CcEEEEECCHHHHHHhcCeeEEE
Confidence 2222 34556666666666677776543
No 278
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.1e-20 Score=189.62 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=123.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh--c---CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~--~---~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. | +.|+|.+.+.++. ++|+++|..
T Consensus 19 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 96 (253)
T PRK14261 19 KHALYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP 96 (253)
T ss_pred eeeeeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCC
Confidence 468999999999999 999999999999999999999875 3 4799999887642 378898875
Q ss_pred hhh-----hhcccceeecCC-CC-CHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 THA-----RRLQVPIFEKGY-EK-DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~~-~~-d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+. +++.+....... .. .....+.++++.+.+. ..+..+..+|||++|++.|+++|+ .+|+++
T Consensus 97 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ll 171 (253)
T PRK14261 97 NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA-----VNPEVI 171 (253)
T ss_pred ccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 432 222111100110 00 1112334445444331 135677889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|| ||||+|||+..+. .+.+.|..+.. ..++.+..|-+.-+..++|++..|
T Consensus 172 lL-DEP~~gLD~~~~~-~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 172 LM-DEPCSALDPIATA-KIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred EE-eCCcccCCHHHHH-HHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEE
Confidence 99 9999999999874 45577777764 244444444444566667776543
No 279
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.83 E-value=2.5e-20 Score=178.25 Aligned_cols=157 Identities=15% Similarity=0.176 Sum_probs=120.6
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------e-eeeecchhhhhhhc------cc
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------R-SGAVEQLRTHARRL------QV 471 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------R-igaveQl~~~~~~l------~v 471 (591)
.++++++.|+ +++|+||+|+||||+|+.|||+..|..|.|.|.|.|.. | +..++|...+...+ ++
T Consensus 17 ~fdl~v~~ge--~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGE--IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCc--EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 3566778999 99999999999999999999999999999999999872 3 78899976544433 33
Q ss_pred ceeecC-CCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 472 PIFEKG-YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 472 ~l~~~~-~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
.+.... ........+..+...+++.++ +..+-.+|||++||++|||.|. .+-+++|| |||++.|||.-+.+.
T Consensus 95 Gl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclv-----R~~PilLL-DEPFsALdP~LR~eM 168 (231)
T COG3840 95 GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLV-----REQPILLL-DEPFSALDPALRAEM 168 (231)
T ss_pred cCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHh-----ccCCeEEe-cCchhhcCHHHHHHH
Confidence 322111 112233556677778888887 6788899999999999999999 77777777 999999999887544
Q ss_pred HHHHHHHhhcCCCCccceEEEecc
Q 007747 550 FNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
. ..+.++..+ ...|.+++|.
T Consensus 169 l-~Lv~~l~~E---~~~TllmVTH 188 (231)
T COG3840 169 L-ALVSQLCDE---RKMTLLMVTH 188 (231)
T ss_pred H-HHHHHHHHh---hCCEEEEEeC
Confidence 4 666666554 4667777775
No 280
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.83 E-value=2.5e-20 Score=178.00 Aligned_cols=124 Identities=19% Similarity=0.103 Sum_probs=99.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
..+|++++|++.+|+ +++|+||||+||||+++.|+|++.|+.|+|.+.+. .++++++|...+. ..
T Consensus 14 ~~~l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~~~-~~---------- 78 (166)
T cd03223 14 RVLLKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPYLP-LG---------- 78 (166)
T ss_pred CeeeecCeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCccc-cc----------
Confidence 358999999999999 99999999999999999999999999999998764 5689999864321 00
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 557 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l 557 (591)
.+.+-+.+. ....+|||++|++.++|+|+ .+|+++|| ||||+|+|+..+.. +.+.+..+
T Consensus 79 -----tv~~nl~~~-------~~~~LS~G~~~rv~laral~-----~~p~~lll-DEPt~~LD~~~~~~-l~~~l~~~ 137 (166)
T cd03223 79 -----TLREQLIYP-------WDDVLSGGEQQRLAFARLLL-----HKPKFVFL-DEATSALDEESEDR-LYQLLKEL 137 (166)
T ss_pred -----cHHHHhhcc-------CCCCCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCccccCHHHHHH-HHHHHHHh
Confidence 011111110 35789999999999999999 99999999 99999999988753 43566544
No 281
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.6e-20 Score=181.76 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=110.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh--hcCCcEEEEccccc-----ceeeeecchhhhhhhcccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQVP 472 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--~~~~G~V~i~~~Dt-----~RigaveQl~~~~~~l~v~ 472 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++ .|+.|+|.+.+.++ .++++++|...+...+.
T Consensus 20 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~t-- 95 (192)
T cd03232 20 RQLLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLT-- 95 (192)
T ss_pred eEeEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCc--
Confidence 458999999999999 99999999999999999999976 47899999998775 24677776432211111
Q ss_pred eeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHH
Q 007747 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552 (591)
Q Consensus 473 l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~ 552 (591)
. .+.+.+.... -.+|||++|++.|+++|+ .+|+++|+ ||||+|+|+..+. .+.+
T Consensus 96 ---------v----~~~l~~~~~~------~~LSgGe~qrv~la~al~-----~~p~vlll-DEP~~~LD~~~~~-~l~~ 149 (192)
T cd03232 96 ---------V----REALRFSALL------RGLSVEQRKRLTIGVELA-----AKPSILFL-DEPTSGLDSQAAY-NIVR 149 (192)
T ss_pred ---------H----HHHHHHHHHH------hcCCHHHhHHHHHHHHHh-----cCCcEEEE-eCCCcCCCHHHHH-HHHH
Confidence 1 1111110000 089999999999999999 99999999 9999999999875 4557
Q ss_pred HHHHhhcCCCCccceEEEec-cccccCCcEEEE
Q 007747 553 KLADLSSSPNPQLIDGILLT-KFDTIDDKHYQW 584 (591)
Q Consensus 553 ~L~~l~~~~~~~~it~IIlT-K~D~i~d~vGal 584 (591)
.|..+...+.++.+.+|-+. .+..++|++..+
T Consensus 150 ~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l 182 (192)
T cd03232 150 FLKKLADSGQAILCTIHQPSASIFEKFDRLLLL 182 (192)
T ss_pred HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEE
Confidence 77777654333333333333 233456776543
No 282
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.83 E-value=1.6e-20 Score=180.80 Aligned_cols=144 Identities=18% Similarity=0.212 Sum_probs=107.3
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQVP 472 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~v~ 472 (591)
.++++++|++.+|+ +++|+||||+|||||++.|+|++.|..|+|.+.+.++. ++++++|...+
T Consensus 16 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~------- 86 (178)
T cd03247 16 QVLKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYL------- 86 (178)
T ss_pred cceEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCee-------
Confidence 58999999999999 99999999999999999999999999999999987642 25555553211
Q ss_pred eeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHH
Q 007747 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552 (591)
Q Consensus 473 l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~ 552 (591)
+. .. +.+- ++..+||||+|++.|+|+|+ .+|+++|| ||||+|||+..+ ..+.+
T Consensus 87 -~~-------~t-v~~~-----------i~~~LS~G~~qrv~laral~-----~~p~~lll-DEP~~~LD~~~~-~~l~~ 139 (178)
T cd03247 87 -FD-------TT-LRNN-----------LGRRFSGGERQRLALARILL-----QDAPIVLL-DEPTVGLDPITE-RQLLS 139 (178)
T ss_pred -ec-------cc-HHHh-----------hcccCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCcccCCHHHH-HHHHH
Confidence 10 00 1110 16789999999999999999 99999999 999999999886 45557
Q ss_pred HHHHhhcCCCCccceEEEeccccccCCcEE
Q 007747 553 KLADLSSSPNPQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 553 ~L~~l~~~~~~~~it~IIlTK~D~i~d~vG 582 (591)
.|..+. ...++.+.+|-..-+. .+|++.
T Consensus 140 ~l~~~~-~~~tii~~sh~~~~~~-~~d~~~ 167 (178)
T cd03247 140 LIFEVL-KDKTLIWITHHLTGIE-HMDKIL 167 (178)
T ss_pred HHHHHc-CCCEEEEEecCHHHHH-hCCEEE
Confidence 777764 2333344444444444 245543
No 283
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=192.92 Aligned_cols=175 Identities=19% Similarity=0.153 Sum_probs=123.5
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEccccc----------ceeeeecchh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDT----------FRSGAVEQLR 463 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt----------~RigaveQl~ 463 (591)
...+|++++|++.+|+ +++|+||||+|||||+++|+|++.| ..|+|.+.+.++ .++++++|..
T Consensus 33 ~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 33 GKTVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110 (276)
T ss_pred CEEEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCC
Confidence 3568999999999999 9999999999999999999999985 689999988664 1488999865
Q ss_pred hh-----hhhcccceeecCCCCCHH---HHHHHHHHHhhhcC-----CCcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 464 TH-----ARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d~~---~~a~~al~~~~~~~-----~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.+ .+++.+.+.... ..... ..+.++++.+++.. .+..+..+||||+|++.|+|+|+ .+|++
T Consensus 111 ~l~~~tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~-----~~p~l 184 (276)
T PRK14271 111 NPFPMSIMDNVLAGVRAHK-LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA-----VNPEV 184 (276)
T ss_pred ccCCccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCE
Confidence 32 222222111000 01111 22334444444321 23456789999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|| ||||+|||+..+. .+.+.|..+... .++.+.+|-+.-+..++|++..|
T Consensus 185 llL-DEPt~~LD~~~~~-~l~~~L~~~~~~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 185 LLL-DEPTSALDPTTTE-KIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred EEE-cCCcccCCHHHHH-HHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 999 9999999999874 455777777642 44444444444555567776543
No 284
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.8e-20 Score=188.47 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=119.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh--c---CCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~--~---~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. | +.|+|.+.|.++. ++|+++|..
T Consensus 18 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 95 (252)
T PRK14255 18 FEALKGIDLDFNQNE--ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95 (252)
T ss_pred eeEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC
Confidence 458999999999999 999999999999999999999865 4 4899999887641 488999965
Q ss_pred hh-----hhhcccceeecCCCCCH--HHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 TH-----ARRLQVPIFEKGYEKDP--AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~~~~~d~--~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+ .+++...+......... ...+.++++.+.+. ..+..+..+||||+|++.|+++|+ .+|+++
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ll 170 (252)
T PRK14255 96 NPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA-----VKPDVI 170 (252)
T ss_pred ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 23222211111111111 12233344443321 124667889999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|| ||||+|||+..+. .+.+.|..+... .++.+.+|-..-+..++|++..
T Consensus 171 ll-DEPt~~LD~~~~~-~l~~~l~~~~~~-~tii~vsH~~~~~~~~~d~i~~ 219 (252)
T PRK14255 171 LL-DEPTSALDPISST-QIENMLLELRDQ-YTIILVTHSMHQASRISDKTAF 219 (252)
T ss_pred EE-cCCCccCCHHHHH-HHHHHHHHHHhC-CEEEEEECCHHHHHHhCCEEEE
Confidence 99 9999999999874 455777777542 3333333333334455676644
No 285
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.83 E-value=3e-20 Score=173.70 Aligned_cols=103 Identities=26% Similarity=0.285 Sum_probs=92.1
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCC
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 480 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~ 480 (591)
.++++++|.+++|+ +++|+||||+||||++++|+|+++|+.|+|.+.+. .++++++|
T Consensus 14 ~~l~~~~~~~~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~------------------- 70 (144)
T cd03221 14 LLLKDISLTINPGD--RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ------------------- 70 (144)
T ss_pred eEEEeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc-------------------
Confidence 58999999999999 99999999999999999999999999999999874 35777776
Q ss_pred CHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q 007747 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 557 (591)
Q Consensus 481 d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l 557 (591)
+|+||+|++.|+++|+ .+|+++|| |||++|+|+..+. .+.+.++.+
T Consensus 71 ------------------------lS~G~~~rv~laral~-----~~p~illl-DEP~~~LD~~~~~-~l~~~l~~~ 116 (144)
T cd03221 71 ------------------------LSGGEKMRLALAKLLL-----ENPNLLLL-DEPTNHLDLESIE-ALEEALKEY 116 (144)
T ss_pred ------------------------CCHHHHHHHHHHHHHh-----cCCCEEEE-eCCccCCCHHHHH-HHHHHHHHc
Confidence 9999999999999999 99999999 9999999999874 344566554
No 286
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.83 E-value=1.3e-20 Score=208.55 Aligned_cols=175 Identities=19% Similarity=0.147 Sum_probs=127.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-CCcEEEEccccc----------ceeeeecchhhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDT----------FRSGAVEQLRTHARR 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-~~G~V~i~~~Dt----------~RigaveQl~~~~~~ 468 (591)
..+|++++|.+.+|+ +++|+||||||||||+++|+|++.+ +.|+|.+.|.+. .++|+++|.......
T Consensus 273 ~~il~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 350 (490)
T PRK10938 273 RPILHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYR 350 (490)
T ss_pred eeEEeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcc
Confidence 458999999999999 9999999999999999999998765 689999988653 138999986432111
Q ss_pred --c---cc---ceee--cCCC-CC--HHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 469 --L---QV---PIFE--KGYE-KD--PAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 469 --l---~v---~l~~--~~~~-~d--~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
. ++ .++. ..+. .. ....+.++++.+++.. .+..+.++||||+||+.|+++|+ .+|+++||
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~-----~~p~lllL 425 (490)
T PRK10938 351 VSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV-----KHPTLLIL 425 (490)
T ss_pred cCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 0 11 1111 0111 11 1234566777776654 36778999999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCC-CccceEEEeccccc-cCCcEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKFDT-IDDKHYQ 583 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK~D~-i~d~vGa 583 (591)
||||+|||+..+. .+.+.|..+...+. ++.+.+|-+.-+.. ++|++..
T Consensus 426 -DEPt~gLD~~~~~-~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~ 475 (490)
T PRK10938 426 -DEPLQGLDPLNRQ-LVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEF 475 (490)
T ss_pred -cCccccCCHHHHH-HHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEE
Confidence 9999999999974 45588888876543 35556666665654 3555543
No 287
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=3.8e-20 Score=174.97 Aligned_cols=163 Identities=18% Similarity=0.240 Sum_probs=128.0
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ce--eeeecchh-----
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FR--SGAVEQLR----- 463 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~R--igaveQl~----- 463 (591)
....+|++|||++.+|+ .++|+||+||||||+++.+|.+..|+.|.+++-|.|+ || ++|+-|-+
T Consensus 14 ~~a~il~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 44568999999999999 9999999999999999999999999999999999987 43 77888865
Q ss_pred hhhhhcccceeecCCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 464 THARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 464 ~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
++.++|-+|+..+....++. .+.+.+..+.+.. ++..+-++|||++|+.+|+|.|. .-|+++|| ||||+.|
T Consensus 92 tVeDNlifP~~~r~rr~dr~-aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq-----~~P~ILLL-DE~TsAL 164 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRA-AALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ-----FMPKILLL-DEITSAL 164 (223)
T ss_pred chhhccccchHHhccCCChH-HHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh-----cCCceEEe-cCchhhc
Confidence 45777777876555555543 3445566555433 36778899999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
|..+. +..++++-.+-. ...+..+.+|.
T Consensus 165 D~~nk-r~ie~mi~~~v~---~q~vAv~WiTH 192 (223)
T COG4619 165 DESNK-RNIEEMIHRYVR---EQNVAVLWITH 192 (223)
T ss_pred ChhhH-HHHHHHHHHHhh---hhceEEEEEec
Confidence 99886 555555544432 12455555654
No 288
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.5e-20 Score=192.63 Aligned_cols=174 Identities=18% Similarity=0.162 Sum_probs=130.5
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-c----CCcEEEEcccccc-------------eeeee
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-Q----HKVSVMMAACDTF-------------RSGAV 459 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-~----~~G~V~i~~~Dt~-------------Rigav 459 (591)
..+.++++|||++.+|+ +++|||.+|||||||...|.+++. + .+|+|.+.|.|.+ ++++|
T Consensus 16 g~v~av~~vs~~i~~GE--~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mI 93 (316)
T COG0444 16 GVVKAVDGVSFELKKGE--ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93 (316)
T ss_pred ccEEEEeceeEEEcCCc--EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEE
Confidence 35679999999999999 999999999999999999999997 3 4689999999762 49999
Q ss_pred cchhhh--------hhhcccceeecCC---CCCHHHHHHHHHHHhhhcCC----CcchhccchhHHHHHHHHHHHHhchh
Q 007747 460 EQLRTH--------ARRLQVPIFEKGY---EKDPAIVAKEAIQEATRNGS----DVVLVDTAGRMQDNEPLMRALSKLIY 524 (591)
Q Consensus 460 eQl~~~--------~~~l~v~l~~~~~---~~d~~~~a~~al~~~~~~~~----d~vliDtSGg~~qr~~LaraL~kl~~ 524 (591)
+|.+.. ...+.-.+..... ..+....+.++++.+++.+. +.++..+||||+||+.+|.+|+
T Consensus 94 fQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala---- 169 (316)
T COG0444 94 FQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA---- 169 (316)
T ss_pred EcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh----
Confidence 997532 2221111111111 11223455566666655543 5778899999999999999999
Q ss_pred cCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEE
Q 007747 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQ 583 (591)
Q Consensus 525 ~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGa 583 (591)
.+|+++|. ||||++||...|.+.+ +.|+++..+ .+.+.+++|. +-++||++.+
T Consensus 170 -~~P~LlIA-DEPTTALDvt~QaqIl-~Ll~~l~~e---~~~aiilITHDl~vva~~aDri~V 226 (316)
T COG0444 170 -LNPKLLIA-DEPTTALDVTVQAQIL-DLLKELQRE---KGTALILITHDLGVVAEIADRVAV 226 (316)
T ss_pred -CCCCEEEe-CCCcchhhHHHHHHHH-HHHHHHHHh---cCCEEEEEeCCHHHHHHhcceEEE
Confidence 99999999 9999999999998766 777777653 3555566664 5566776654
No 289
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.9e-20 Score=188.43 Aligned_cols=175 Identities=17% Similarity=0.207 Sum_probs=121.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-----CCcEEEEccccc-------------ceeeeecc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDT-------------FRSGAVEQ 461 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-----~~G~V~i~~~Dt-------------~RigaveQ 461 (591)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++.| +.|+|.+.+.+. .++|+++|
T Consensus 29 ~~vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 106 (265)
T PRK14252 29 YQALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ 106 (265)
T ss_pred eeeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc
Confidence 468999999999999 9999999999999999999999875 689999976432 13889998
Q ss_pred hhh-----hhhhcccceeecCCCC--CHHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 462 LRT-----HARRLQVPIFEKGYEK--DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 462 l~~-----~~~~l~v~l~~~~~~~--d~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
... ..+++.+.+...+... .....+.++++.++.. ..+..+..+|||++|++.|+++|+ .+|+
T Consensus 107 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ 181 (265)
T PRK14252 107 KPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALA-----TDPE 181 (265)
T ss_pred CCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHH-----cCCC
Confidence 643 2333322211011111 1123344455544331 124567789999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++|| ||||+|||+..+ ..+.+.|..+.. ..++.+..|-+.-+..++|++..+
T Consensus 182 llll-DEPt~gLD~~~~-~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l 233 (265)
T PRK14252 182 ILLF-DEPTSALDPIAT-ASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYM 233 (265)
T ss_pred EEEE-eCCCccCCHHHH-HHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999 999999999886 455577777754 233333334334455567776543
No 290
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.8e-20 Score=193.45 Aligned_cols=172 Identities=19% Similarity=0.215 Sum_probs=122.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++. |+.|+|.+.|.++. ++++++|..
T Consensus 58 ~~iL~~is~~i~~Ge--~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 58 DHALKGVSMDIPEKS--VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred eeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 358999999999999 999999999999999999999986 58999999987652 388999865
Q ss_pred hh-----hhhcccceeec----------CCCCC----HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHH
Q 007747 464 TH-----ARRLQVPIFEK----------GYEKD----PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRAL 519 (591)
Q Consensus 464 ~~-----~~~l~v~l~~~----------~~~~d----~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL 519 (591)
.+ .+++.+.+... .+... ....+.++++.+.+. ..+..+..+||||+|++.|+++|
T Consensus 136 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL 215 (305)
T PRK14264 136 NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL 215 (305)
T ss_pred ccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH
Confidence 32 22222211000 00111 122344455544331 12456788999999999999999
Q ss_pred HhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 520 SKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 520 ~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
+ .+|+++|| ||||+|||+..+. .+.+.|..+... .++.+.+|-+.-+..++|++
T Consensus 216 ~-----~~p~lLLL-DEPtsgLD~~~~~-~l~~~L~~~~~~-~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 216 A-----VDPEVILM-DEPASALDPIATS-KIEDLIEELAEE-YTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred h-----cCCCEEEE-eCCcccCCHHHHH-HHHHHHHHHhcC-CEEEEEEcCHHHHHHhcCEE
Confidence 9 99999999 9999999999874 455778777653 33444444444556667764
No 291
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.82 E-value=3.2e-20 Score=229.78 Aligned_cols=175 Identities=16% Similarity=0.201 Sum_probs=137.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL-- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l-- 469 (591)
..+|++++|.+.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.|+. ++|+++|...+...+
T Consensus 943 k~aL~~lsl~I~~Ge--i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257 943 RPAVDRLNITFYENQ--ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTV 1020 (2272)
T ss_pred ceEEEeeEEEEcCCc--EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCH
Confidence 468999999999999 99999999999999999999999999999999998762 389999975443333
Q ss_pred --ccceeecCCCCC---HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 --QVPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 --~v~l~~~~~~~d---~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
++.++...++.. ....+.++++.+++.+. +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+
T Consensus 1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi-----~~PkVLLL-DEPTSGLDp 1094 (2272)
T TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV-----GDAKVVVL-DEPTSGVDP 1094 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCCcCCCH
Confidence 122222222221 12345566666666543 6788899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+.. +.+.|.++. .++++.+++|.+..++.++|++..+
T Consensus 1095 ~sr~~-l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL 1133 (2272)
T TIGR01257 1095 YSRRS-IWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAII 1133 (2272)
T ss_pred HHHHH-HHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEE
Confidence 99854 447888875 3566777777777788888887654
No 292
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=4.2e-20 Score=188.65 Aligned_cols=171 Identities=19% Similarity=0.135 Sum_probs=122.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEE-----------Ecccccc-----------eeee
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTF-----------RSGA 458 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~-----------i~~~Dt~-----------Riga 458 (591)
.+|+++++ +.+|+ +++|+|||||||||||+.|+|++.|+.|+|. +.+.++. ++++
T Consensus 15 ~~l~~i~~-i~~Ge--~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLPV-PREGQ--VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCCC-CCCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 47899994 88999 9999999999999999999999999999996 5565541 1345
Q ss_pred ecchhhhhhhc---ccceeecCCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 459 VEQLRTHARRL---QVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 459 veQl~~~~~~l---~v~l~~~~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
++|........ .+... .........+.++++.+++.. .+..+..+|||++|++.|+++|+ .+|+++||
T Consensus 92 ~~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p~illl- 163 (255)
T cd03236 92 KPQYVDLIPKAVKGKVGEL--LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA-----RDADFYFF- 163 (255)
T ss_pred ecchhccCchHHHHHHHHH--hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-
Confidence 55533211100 11100 011122344556666665543 25677899999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||||+++|+..+. .+.+.|..+...+.++.+.+|-+.-+..++|++..
T Consensus 164 DEPts~LD~~~~~-~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~ 211 (255)
T cd03236 164 DEPSSYLDIKQRL-NAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHC 211 (255)
T ss_pred ECCCCCCCHHHHH-HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 9999999999874 45578888776555566666666666667777654
No 293
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.5e-20 Score=185.56 Aligned_cols=174 Identities=17% Similarity=0.223 Sum_probs=120.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. |+.|+|.+.|.++. ++++++|..
T Consensus 16 ~~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 16 AHILKNVNLDIPKNS--VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 458999999999999 999999999999999999999864 37899999987642 389999875
Q ss_pred hhh-----hhcccceeecCCCC-C-HHHHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 THA-----RRLQVPIFEKGYEK-D-PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~~~~-d-~~~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
.+. +++...+....... . ....+.++++.+++. ..+..+..+|||++|++.|+++|+ .+|+++
T Consensus 94 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ll 168 (250)
T PRK14266 94 NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA-----VSPEVI 168 (250)
T ss_pred ccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH-----cCCCEE
Confidence 432 22221111111101 1 122334444444321 125567789999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|| ||||+|+|+..+. .+.+.|..+.. +.++.+.+|-..-+..+++++..
T Consensus 169 ll-DEP~~gLD~~~~~-~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~ 217 (250)
T PRK14266 169 LM-DEPCSALDPISTT-KIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSF 217 (250)
T ss_pred EE-cCCCccCCHHHHH-HHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEE
Confidence 99 9999999998874 45577777753 33333343433445555665543
No 294
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.82 E-value=5.8e-20 Score=205.07 Aligned_cols=154 Identities=20% Similarity=0.159 Sum_probs=116.4
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhh-----hh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTH-----AR 467 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~-----~~ 467 (591)
.+|+|+||++++|+ .++|+||+||||||+++.|+|++.|+.|+|.++|.|+. ++|+|+|...+ .+
T Consensus 349 ~vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~e 426 (529)
T TIGR02868 349 PVLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRD 426 (529)
T ss_pred ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHH
Confidence 58999999999999 99999999999999999999999999999999998874 59999998743 34
Q ss_pred hcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 468 RLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 468 ~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
|+ .+... ..++ +.+.++++.++. .++|..+. .+|||++||++|||+|. .+|+++|| |
T Consensus 427 NI--~~g~~--~~~~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall-----~~~~iliL-D 495 (529)
T TIGR02868 427 NL--RLGRP--DATD-EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALL-----ADAPILLL-D 495 (529)
T ss_pred HH--hccCC--CCCH-HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 33 22111 1122 234455554432 24555543 48999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
|||+++|+.... .+.+.+..+. ...|.|++|.
T Consensus 496 E~TSaLD~~te~-~I~~~l~~~~-----~~~TvIiItH 527 (529)
T TIGR02868 496 EPTEHLDAGTES-ELLEDLLAAL-----SGKTVVVITH 527 (529)
T ss_pred CCcccCCHHHHH-HHHHHHHHhc-----CCCEEEEEec
Confidence 999999998864 3445554432 2356666653
No 295
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.1e-20 Score=205.86 Aligned_cols=171 Identities=15% Similarity=0.070 Sum_probs=121.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhh------hhcccce
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA------RRLQVPI 473 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~------~~l~v~l 473 (591)
..+|+++||++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+. .++|+++|..... +++.++.
T Consensus 14 ~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q~~~~~~~~tv~e~l~~~~ 89 (530)
T PRK15064 14 KPLFENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQDQFAFEEFTVLDTVIMGH 89 (530)
T ss_pred cEeEeCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCcCCCCcHHHHHHHhh
Confidence 468999999999999 99999999999999999999999999999998763 3689999864222 1111110
Q ss_pred ---e----------e--------------------cCCCCCHHHHHHHHHHHhhhcCC--CcchhccchhHHHHHHHHHH
Q 007747 474 ---F----------E--------------------KGYEKDPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRA 518 (591)
Q Consensus 474 ---~----------~--------------------~~~~~d~~~~a~~al~~~~~~~~--d~vliDtSGg~~qr~~Lara 518 (591)
+ . ..++.+....+.++++.+++... +..+.++||||+||+.||++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~a 169 (530)
T PRK15064 90 TELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQA 169 (530)
T ss_pred HHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHH
Confidence 0 0 00001112334455665555332 34678899999999999999
Q ss_pred HHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 519 LSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 519 L~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+ .+|+++|| ||||+|||+..+. .+.+.|. ..+.++.+.+|-+.-+..+||++-.|
T Consensus 170 L~-----~~p~lLlL-DEPt~~LD~~~~~-~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 170 LF-----SNPDILLL-DEPTNNLDINTIR-WLEDVLN---ERNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred Hh-----cCCCEEEE-cCCCcccCHHHHH-HHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEEE
Confidence 99 99999999 9999999999874 3434443 33345555556666666777776543
No 296
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.5e-20 Score=193.80 Aligned_cols=173 Identities=20% Similarity=0.244 Sum_probs=123.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-----cCCcEEEEcccccc-----------eeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-----~~~G~V~i~~~Dt~-----------RigaveQl~ 463 (591)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. |..|+|.|.|.++. ++++++|.+
T Consensus 95 ~~~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 95 KHVLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 458999999999999 999999999999999999999985 46899999998862 489999976
Q ss_pred hhh-----hhcccceeecCCCCCHH----HHHHHHHHHhhhc-----CCCcchhccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 464 THA-----RRLQVPIFEKGYEKDPA----IVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 464 ~~~-----~~l~v~l~~~~~~~d~~----~~a~~al~~~~~~-----~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
.+. +++.+. ....+.... ..+..+++.+.+. ..+.....+|||++||+.|||+|. .+|+
T Consensus 173 ~~~~~ti~eNi~~~--~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~-----~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYG--PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIA-----LEPE 245 (329)
T ss_pred ccCCCcHHHHHHhH--HHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHH-----hCCC
Confidence 432 222211 111111111 1234445544331 135667889999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++|| ||||+++|+.... .+.+.|..+... .++.+..|-+.-+-.++|++..+
T Consensus 246 IlLL-DEPts~LD~~~~~-~i~~~i~~l~~~-~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 246 VLLM-DEPTSALDPIATA-KIEELILELKKK-YSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred EEEE-eCCcccCCHHHHH-HHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999 9999999998874 477888777652 33333333333344456776554
No 297
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=6.9e-20 Score=186.62 Aligned_cols=169 Identities=14% Similarity=0.000 Sum_probs=114.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l- 469 (591)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++.|..|+|.+.+.++. ++++++|...+...-
T Consensus 34 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv 111 (257)
T cd03288 34 KPVLKHVKAYIKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSI 111 (257)
T ss_pred CcceeEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHH
Confidence 458999999999999 99999999999999999999999999999999987652 389999976432210
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhh------c--CC----CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATR------N--GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~------~--~~----d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
++.... .... ..+.+++..+.. . ++ +.....+|||++|++.|+++|+ .+|+++|| |
T Consensus 112 ~~nl~~~~---~~~~-~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-D 181 (257)
T cd03288 112 RFNLDPEC---KCTD-DRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV-----RKSSILIM-D 181 (257)
T ss_pred HHhcCcCC---CCCH-HHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 111100 0111 112222222111 1 12 2334679999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|||+|+|+..+. .+.+.+..+.. ..++.+.+|-+.-+.. +|++..
T Consensus 182 EPt~gLD~~~~~-~l~~~l~~~~~-~~tiii~sh~~~~~~~-~dri~~ 226 (257)
T cd03288 182 EATASIDMATEN-ILQKVVMTAFA-DRTVVTIAHRVSTILD-ADLVLV 226 (257)
T ss_pred CCccCCCHHHHH-HHHHHHHHhcC-CCEEEEEecChHHHHh-CCEEEE
Confidence 999999999864 45466666532 3333333333333333 455433
No 298
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.81 E-value=1.6e-19 Score=198.30 Aligned_cols=220 Identities=22% Similarity=0.269 Sum_probs=153.9
Q ss_pred hhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccc
Q 007747 332 KADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE 411 (591)
Q Consensus 332 ~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~ 411 (591)
...-+|.-..+.+.|++.||.++++.+|++.+..... . ......+.+.|.+.+.- ...+. +.
T Consensus 287 ~~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~------~----~~~~~~l~~~L~~~l~v-~~~~~-------l~ 348 (559)
T PRK12727 287 RLRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADTE------L----HRGRGLMLGLLSKRLPV-APVDP-------LE 348 (559)
T ss_pred hhccChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccc------h----hhHHHHHHHHHHHhcCc-Ccccc-------cc
Confidence 3455688888999999999999999999998865321 0 11223445555555531 11111 23
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcC--CcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHH
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~--~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~a 489 (591)
.|+ +++|+||+|+||||++.+|+.++... +.+|.+..+|+||+|+.+|++.+.+.+++++.... +. .....+
T Consensus 349 ~G~--vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~---d~-~~L~~a 422 (559)
T PRK12727 349 RGG--VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEAD---SA-ESLLDL 422 (559)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecC---cH-HHHHHH
Confidence 577 99999999999999999999876543 46899999999999999999999999998876532 22 223344
Q ss_pred HHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEE
Q 007747 490 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 490 l~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (591)
++. ..++|+++|||+|+++....++..|..|........+|+|+-.+...|.......| . ...++++
T Consensus 423 L~~--l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f-------~----~~~~~gv 489 (559)
T PRK12727 423 LER--LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF-------A----HAKPQGV 489 (559)
T ss_pred HHH--hccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH-------H----hhCCeEE
Confidence 443 34689999999999988878777776555444445555545444444544333333 2 2368999
Q ss_pred EeccccccCCcEEE-EEeccc
Q 007747 570 LLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 570 IlTK~D~i~d~vGa-ls~~~~ 589 (591)
|+||+|+ +.++|. |+++++
T Consensus 490 ILTKlDE-t~~lG~aLsv~~~ 509 (559)
T PRK12727 490 VLTKLDE-TGRFGSALSVVVD 509 (559)
T ss_pred EEecCcC-ccchhHHHHHHHH
Confidence 9999999 467787 887654
No 299
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=8.3e-20 Score=171.69 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=133.5
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------------ceeeeec
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------------FRSGAVE 460 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------------~Rigave 460 (591)
.++...+|.||++..+.|+ .++++||+|+||||+|+.|.-+..|.+|...|++... ..+|.|+
T Consensus 11 ~yg~~q~lfdi~l~~~~ge--tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf 88 (242)
T COG4161 11 FYGAHQALFDITLDCPEGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88 (242)
T ss_pred ccccchheeeeeecCCCCC--EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhh
Confidence 3455678999999999999 9999999999999999999999999999999987543 1288888
Q ss_pred chhhhh------hhc-ccceeecCCCCC-HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 461 QLRTHA------RRL-QVPIFEKGYEKD-PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 461 Ql~~~~------~~l-~v~l~~~~~~~d-~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
|-..+- +++ ..|....+..++ +...+.+.++.+++..+ |..+..+|||++||++++|+|+ .+|+++
T Consensus 89 qqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm-----mkpqvl 163 (242)
T COG4161 89 QQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM-----MEPQVL 163 (242)
T ss_pred hhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh-----cCCcEE
Confidence 854332 222 233333333333 23456666777777666 8899999999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|| ||||+.|||.-..+.. .+++++... +|+-+|+|.==.++.++..
T Consensus 164 lf-deptaaldpeitaqvv-~iikel~~t----gitqvivthev~va~k~as 209 (242)
T COG4161 164 LF-DEPTAALDPEITAQIV-SIIKELAET----GITQVIVTHEVEVARKTAS 209 (242)
T ss_pred ee-cCcccccCHHHHHHHH-HHHHHHHhc----CceEEEEEeehhHHHhhhh
Confidence 99 9999999998765544 777777764 7888888765445555443
No 300
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.81 E-value=5.1e-20 Score=207.13 Aligned_cols=171 Identities=20% Similarity=0.148 Sum_probs=123.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhh------hhcccce
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA------RRLQVPI 473 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~------~~l~v~l 473 (591)
..+|+++||++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+. .++|+++|...+. +++...+
T Consensus 20 ~~il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~~~~~tv~e~l~~~~ 95 (556)
T PRK11819 20 KQILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--IKVGYLPQEPQLDPEKTVRENVEEGV 95 (556)
T ss_pred CeeeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCCCCCCcHHHHHHHhh
Confidence 568999999999999 99999999999999999999999999999998642 4799999975332 2222111
Q ss_pred ee---------c---CCC-C------------------------CHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHH
Q 007747 474 FE---------K---GYE-K------------------------DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM 516 (591)
Q Consensus 474 ~~---------~---~~~-~------------------------d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~La 516 (591)
.. . .+. . +....+..+++.+++...+..+.++||||+|++.|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la 175 (556)
T PRK11819 96 AEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALC 175 (556)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHH
Confidence 00 0 000 0 011233444555544334677889999999999999
Q ss_pred HHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 517 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 517 raL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++|. .+|+++|| ||||++||+..+. .+.+.|..+. .++.+.+|-+.-++.++|++..|
T Consensus 176 ~al~-----~~p~vlLL-DEPt~~LD~~~~~-~l~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 176 RLLL-----EKPDMLLL-DEPTNHLDAESVA-WLEQFLHDYP---GTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred HHHh-----CCCCEEEE-cCCCCcCChHHHH-HHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEE
Confidence 9999 99999999 9999999999874 3446666552 34555556555666777776543
No 301
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=4.7e-20 Score=201.38 Aligned_cols=182 Identities=18% Similarity=0.139 Sum_probs=138.8
Q ss_pred HHHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeec
Q 007747 391 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVE 460 (591)
Q Consensus 391 ~~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------Rigave 460 (591)
.++-.....+.+|++++|++.+|+ |++|+|.||||||||++.|+|.+.|+.|+|.+.|..+. -|+.|.
T Consensus 12 ~~i~K~FggV~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 12 RGISKSFGGVKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred ecceEEcCCceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 344445567889999999999999 99999999999999999999999999999999998762 288999
Q ss_pred chhhhhhhcccc--ee-ecC-----CCCCHH---HHHHHHHHHhhh-cCCCcchhccchhHHHHHHHHHHHHhchhcCCC
Q 007747 461 QLRTHARRLQVP--IF-EKG-----YEKDPA---IVAKEAIQEATR-NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNP 528 (591)
Q Consensus 461 Ql~~~~~~l~v~--l~-~~~-----~~~d~~---~~a~~al~~~~~-~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~P 528 (591)
|...++.+|.|. +| .+. .--|.. ..+.++++.+.. ...+..+.++|+++||-++|||||. .++
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~-----~~a 164 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS-----FDA 164 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh-----cCC
Confidence 987666666332 11 110 012223 344455554443 2357888999999999999999999 899
Q ss_pred cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 529 dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
.++|| ||||+.|+..+....| +.+++++.++..+.+-+|-+..+=.+||++
T Consensus 165 rllIl-DEPTaaLt~~E~~~Lf-~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 165 RVLIL-DEPTAALTVKETERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred CEEEE-cCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEcCcHHHHHHhcCEE
Confidence 99999 9999999999876666 888999887655554445555555667764
No 302
>PLN03211 ABC transporter G-25; Provisional
Probab=99.81 E-value=5.4e-20 Score=210.41 Aligned_cols=177 Identities=18% Similarity=0.199 Sum_probs=130.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC--CcEEEEccccc-----ceeeeecchhhhhhhccc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDT-----FRSGAVEQLRTHARRLQV 471 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~--~G~V~i~~~Dt-----~RigaveQl~~~~~~l~v 471 (591)
...+|+++|+.+++|+ +++|+|||||||||||+.|+|++.|. .|+|.+.|.+. .++|+|+|...+...+.+
T Consensus 80 ~~~iL~~vs~~i~~Ge--~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV 157 (659)
T PLN03211 80 ERTILNGVTGMASPGE--ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTV 157 (659)
T ss_pred CCeeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCH
Confidence 4568999999999999 99999999999999999999999875 89999999875 359999997654333211
Q ss_pred ----ceee--c-CCCCCH---HHHHHHHHHHhhhcCC-C-----cchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 472 ----PIFE--K-GYEKDP---AIVAKEAIQEATRNGS-D-----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 472 ----~l~~--~-~~~~d~---~~~a~~al~~~~~~~~-d-----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
.+.. + ...... ...+.+.++.+++.+. + ..+..+||||+||+.|+++|. .+|+++|| |
T Consensus 158 ~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~-----~~P~iLlL-D 231 (659)
T PLN03211 158 RETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INPSLLIL-D 231 (659)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH-----hCCCEEEE-e
Confidence 1111 1 011112 2334556666555433 2 234568999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec-cccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT-KFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT-K~D~i~d~vGal 584 (591)
|||+|||+..+. .+.+.|+.+.+.++++.++.|-.+ .+..++|++..|
T Consensus 232 EPtsgLD~~~~~-~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL 280 (659)
T PLN03211 232 EPTSGLDATAAY-RLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL 280 (659)
T ss_pred CCCCCcCHHHHH-HHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEe
Confidence 999999999875 455788888776666666766665 344556666443
No 303
>PRK13409 putative ATPase RIL; Provisional
Probab=99.81 E-value=5.1e-20 Score=208.20 Aligned_cols=168 Identities=18% Similarity=0.153 Sum_probs=126.8
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhccc----ceeecC
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV----PIFEKG 477 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v----~l~~~~ 477 (591)
.|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+. .++|+++|.......+.+ .+....
T Consensus 354 ~l~~~s~~i~~Ge--iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~ 427 (590)
T PRK13409 354 SLEVEGGEIYEGE--VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQYIKPDYDGTVEDLLRSITDD 427 (590)
T ss_pred EEEecceEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEecccccCCCCCcHHHHHHHHhhh
Confidence 3788999999999 999999999999999999999999999999885 479999997533222211 111111
Q ss_pred CCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q 007747 478 YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (591)
Q Consensus 478 ~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~ 556 (591)
+. ....+.++++.+++.. .+..+..+|||++||+.||++|+ .+|+++|| ||||+|||+..+.. +.+.|++
T Consensus 428 ~~--~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~-----~~p~llLL-DEPt~~LD~~~~~~-l~~~l~~ 498 (590)
T PRK13409 428 LG--SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLS-----RDADLYLL-DEPSAHLDVEQRLA-VAKAIRR 498 (590)
T ss_pred cC--hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCccCCCHHHHHH-HHHHHHH
Confidence 11 1223456666665543 36788899999999999999999 99999999 99999999998754 4578888
Q ss_pred hhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 557 LSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 557 l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+... +.++.+.+|-+.-++.++|++..+
T Consensus 499 l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 499 IAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 8654 455566666666677778876553
No 304
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.3e-20 Score=205.13 Aligned_cols=169 Identities=13% Similarity=0.122 Sum_probs=123.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhh--hhhhcc----cce
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT--HARRLQ----VPI 473 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~--~~~~l~----v~l 473 (591)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+. .++|+++|... +...+. +.+
T Consensus 332 ~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~~~q~~~~~~~~~~t~~~~~~~ 407 (530)
T PRK15064 332 GPLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--ANIGYYAQDHAYDFENDLTLFDWMSQ 407 (530)
T ss_pred ceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEcccccccCCCCCcHHHHHHH
Confidence 458999999999999 99999999999999999999999999999998764 46999999642 222121 111
Q ss_pred eecCCCCCHHHHHHHHHHHhhhc--CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 474 FEKGYEKDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 474 ~~~~~~~d~~~~a~~al~~~~~~--~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
+.. .......+.++++.+... ..+..+..+||||+||+.|+++|+ .+|+++|| ||||+|||+..+. .+.
T Consensus 408 ~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~-----~~p~lllL-DEPt~~LD~~~~~-~l~ 478 (530)
T PRK15064 408 WRQ--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM-----QKPNVLVM-DEPTNHMDMESIE-SLN 478 (530)
T ss_pred hcc--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHHH-HHH
Confidence 111 112234455666666542 236788999999999999999999 99999999 9999999999874 344
Q ss_pred HHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.|..+ ..++.+.+|-..-+..+||++..|
T Consensus 479 ~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l 508 (530)
T PRK15064 479 MALEKY---EGTLIFVSHDREFVSSLATRIIEI 508 (530)
T ss_pred HHHHHC---CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 566554 223444444444555567776553
No 305
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=1.8e-19 Score=174.40 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=108.1
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-c---eeeeecchhhhhhhcccce
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-F---RSGAVEQLRTHARRLQVPI 473 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-~---RigaveQl~~~~~~l~v~l 473 (591)
..+.+|+++||++.+|+ +++|+|||||||||||+.|. +..|+|.+.+... + ++++++|
T Consensus 6 ~~~~~l~~isl~i~~G~--~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNV--LVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeeecceEEEEcCCC--EEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH------------
Confidence 34678999999999999 99999999999999999884 3688898875532 1 2444444
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCC--CcEEEEEecccCCCCHHHHHHH
Q 007747 474 FEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNN--PDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 474 ~~~~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~--PdlILLVDEPt~GlD~~~q~~~ 549 (591)
.++++.+.+.. .+..+..+||||+|++.|+++|+ .+ |+++|| ||||+++|+... ..
T Consensus 68 -------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~-----~~~~p~llLl-DEPt~~LD~~~~-~~ 127 (176)
T cd03238 68 -------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELF-----SEPPGTLFIL-DEPSTGLHQQDI-NQ 127 (176)
T ss_pred -------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHh-----hCCCCCEEEE-eCCcccCCHHHH-HH
Confidence 23444444432 35677899999999999999999 89 999999 999999999986 44
Q ss_pred HHHHHHHhhcCCCCccceEEEeccccccCCcEE
Q 007747 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vG 582 (591)
+.+.|.++.+.+.++.+.+|-..-++ .+|++.
T Consensus 128 l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~ 159 (176)
T cd03238 128 LLEVIKGLIDLGNTVILIEHNLDVLS-SADWII 159 (176)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE
Confidence 55777777654444445555444443 355543
No 306
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.81 E-value=1.2e-19 Score=204.20 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=124.2
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchh-hhhhh------ccc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-THARR------LQV 471 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~-~~~~~------l~v 471 (591)
...+|++|+|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+ +.+ .++|+++|.. .+... +..
T Consensus 336 ~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~-~~i~~v~q~~~~~~~~~tv~e~l~~ 411 (556)
T PRK11819 336 DRLLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET-VKLAYVDQSRDALDPNKTVWEEISG 411 (556)
T ss_pred CeeeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc-eEEEEEeCchhhcCCCCCHHHHHHh
Confidence 3468999999999999 99999999999999999999999999999998 333 4799999964 22222 211
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
.......... ...+..+++.+.+.. .+..+..+||||+||+.|+++|+ .+|+++|| ||||+|||+..+. .
T Consensus 412 ~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~~LD~~~~~-~ 483 (556)
T PRK11819 412 GLDIIKVGNR-EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLK-----QGGNVLLL-DEPTNDLDVETLR-A 483 (556)
T ss_pred hccccccccc-HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHHH-H
Confidence 1111111111 122345666666542 36778899999999999999999 99999999 9999999999974 4
Q ss_pred HHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.+.|..+. .++.+.+|-+.-++.+||++..+
T Consensus 484 l~~~l~~~~---~tvi~vtHd~~~~~~~~d~i~~l 515 (556)
T PRK11819 484 LEEALLEFP---GCAVVISHDRWFLDRIATHILAF 515 (556)
T ss_pred HHHHHHhCC---CeEEEEECCHHHHHHhCCEEEEE
Confidence 446666552 23444555555566677776544
No 307
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.81 E-value=6.6e-20 Score=201.53 Aligned_cols=172 Identities=19% Similarity=0.190 Sum_probs=128.0
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC----CcEEEEccccc-------------ceeeeecc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----KVSVMMAACDT-------------FRSGAVEQ 461 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~----~G~V~i~~~Dt-------------~RigaveQ 461 (591)
.+.++++|||++.+|+ +++|||.+||||||+...|.|++.+. +|+|.+.|.|. .++++++|
T Consensus 21 ~~~~v~~vsf~v~~GE--~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q 98 (539)
T COG1123 21 RVPAVRDVSFEVEPGE--ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98 (539)
T ss_pred ceeeeecceEEecCCc--EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEec
Confidence 3578999999999999 99999999999999999999999877 79999999876 25999999
Q ss_pred hhh--------hhhhcccceeecCC---CCCHHHHHHHHHHHhhhcCC---CcchhccchhHHHHHHHHHHHHhchhcCC
Q 007747 462 LRT--------HARRLQVPIFEKGY---EKDPAIVAKEAIQEATRNGS---DVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (591)
Q Consensus 462 l~~--------~~~~l~v~l~~~~~---~~d~~~~a~~al~~~~~~~~---d~vliDtSGg~~qr~~LaraL~kl~~~~~ 527 (591)
.+. ..+.+. ..+...+ ..+....+.+.++..++.+. +.++.++||||+||+.+|+||+ .+
T Consensus 99 ~p~~slnP~~tIg~Qi~-E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa-----~~ 172 (539)
T COG1123 99 DPMTSLNPVMTIGDQIR-EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALA-----LK 172 (539)
T ss_pred CchhhcCchhhHHHHHH-HHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHh-----CC
Confidence 752 111111 1111111 11223344444554444332 3488999999999999999999 99
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEE
Q 007747 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQ 583 (591)
Q Consensus 528 PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGa 583 (591)
|+++|+ ||||++||+..|.+.+ ++|+++..+ .+++.+++|. +-.+||++..
T Consensus 173 P~LLIa-DEPTTaLDvt~q~qIL-~llk~l~~e---~g~a~l~ITHDl~Vva~~aDrv~V 227 (539)
T COG1123 173 PKLLIA-DEPTTALDVTTQAQIL-DLLKDLQRE---LGMAVLFITHDLGVVAELADRVVV 227 (539)
T ss_pred CCEEEE-CCCccccCHHHHHHHH-HHHHHHHHH---cCcEEEEEcCCHHHHHHhcCeEEE
Confidence 999999 9999999999997665 777777643 3556566554 5556777655
No 308
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8e-20 Score=208.62 Aligned_cols=172 Identities=19% Similarity=0.072 Sum_probs=122.4
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchh-----hhhhh-----
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-----THARR----- 468 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~-----~~~~~----- 468 (591)
...+|+++||++.+|+ +++|||||||||||||++|+|.+.|+.|+|.+.+.. ++|+++|.. +....
T Consensus 13 ~~~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~--~i~~~~q~~~~~~~~~~~~v~~~~ 88 (638)
T PRK10636 13 VRVLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW--QLAWVNQETPALPQPALEYVIDGD 88 (638)
T ss_pred CceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--EEEEEecCCCCCCCCHHHHHHHhh
Confidence 3568999999999999 999999999999999999999999999999997743 466666631 10000
Q ss_pred -----cccc-----------ee----e---cCCCCCHHHHHHHHHHHhhhc--CCCcchhccchhHHHHHHHHHHHHhch
Q 007747 469 -----LQVP-----------IF----E---KGYEKDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLI 523 (591)
Q Consensus 469 -----l~v~-----------l~----~---~~~~~d~~~~a~~al~~~~~~--~~d~vliDtSGg~~qr~~LaraL~kl~ 523 (591)
+... .+ . ...+.+....+..++..+++. ..+..+.++|||+++|+.||++|+
T Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~--- 165 (638)
T PRK10636 89 REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI--- 165 (638)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc---
Confidence 0000 00 0 000112223455666666653 246788899999999999999999
Q ss_pred hcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 524 ~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+|+++|| ||||++||+..+. .+.+.|..+ ..++.+.+|-..-++.+|+++-.|
T Consensus 166 --~~P~lLLL-DEPtn~LD~~~~~-~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L 219 (638)
T PRK10636 166 --CRSDLLLL-DEPTNHLDLDAVI-WLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHI 219 (638)
T ss_pred --cCCCEEEE-cCCCCcCCHHHHH-HHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEE
Confidence 99999999 9999999998874 344555443 234555566666677788876543
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.81 E-value=1.3e-19 Score=203.71 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=123.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhh-hh------hhcccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-HA------RRLQVP 472 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~-~~------~~l~v~ 472 (591)
..+|+++||.+.+|+ +++|+|||||||||||++|+|++.|+.|+|.+ +.+ .++|+++|... +. +++...
T Consensus 335 ~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~-~~i~~v~q~~~~~~~~~tv~e~l~~~ 410 (552)
T TIGR03719 335 KLLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET-VKLAYVDQSRDALDPNKTVWEEISGG 410 (552)
T ss_pred eeeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc-eEEEEEeCCccccCCCCcHHHHHHhh
Confidence 468999999999999 99999999999999999999999999999998 333 37999999742 22 222111
Q ss_pred eeecCCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHH
Q 007747 473 IFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 473 l~~~~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
......... ...+.++++.+++.. .+..+..+||||+||+.|+++|+ .+|+++|| ||||+|||+..+. .+
T Consensus 411 ~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~-----~~p~lllL-DEPt~~LD~~~~~-~l 482 (552)
T TIGR03719 411 LDIIQLGKR-EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLK-----SGGNVLLL-DEPTNDLDVETLR-AL 482 (552)
T ss_pred ccccccCcc-hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh-----hCCCEEEE-eCCCCCCCHHHHH-HH
Confidence 110111111 122345666666542 36778899999999999999999 99999999 9999999999874 44
Q ss_pred HHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+.|..+. .++.+.+|-+.-+..+||++..+
T Consensus 483 ~~~l~~~~---~~viivsHd~~~~~~~~d~i~~l 513 (552)
T TIGR03719 483 EEALLEFA---GCAVVISHDRWFLDRIATHILAF 513 (552)
T ss_pred HHHHHHCC---CeEEEEeCCHHHHHHhCCEEEEE
Confidence 46666552 23444555555556667776544
No 310
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.81 E-value=1.1e-19 Score=187.50 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=107.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l- 469 (591)
..+|++++|.+.+|+ +++|+||||+|||||+++|+|++. ..|+|.|.+.++. ++++++|...+...-
T Consensus 17 ~~~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv 93 (275)
T cd03289 17 NAVLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTF 93 (275)
T ss_pred CcceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhH
Confidence 358999999999999 999999999999999999999997 7899999998762 489999977443210
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhhcCC-Ccchh-----------ccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLV-----------DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vli-----------DtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
++..+.. ... ..+.++++.+++..+ +..+. .+||||+|++.|+|+|+ .+|+++|| |
T Consensus 94 ~~nl~~~~~---~~~-~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall-----~~p~illl-D 163 (275)
T cd03289 94 RKNLDPYGK---WSD-EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL-----SKAKILLL-D 163 (275)
T ss_pred HHHhhhccC---CCH-HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-E
Confidence 1211111 112 233444444433221 22222 29999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhh
Q 007747 536 EALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
|||+++|+... ..+.+.|..+.
T Consensus 164 Epts~LD~~~~-~~l~~~l~~~~ 185 (275)
T cd03289 164 EPSAHLDPITY-QVIRKTLKQAF 185 (275)
T ss_pred CccccCCHHHH-HHHHHHHHHhc
Confidence 99999999986 45656776553
No 311
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=8.8e-20 Score=208.31 Aligned_cols=172 Identities=15% Similarity=0.081 Sum_probs=124.8
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhh--hhhhccc-ceee
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT--HARRLQV-PIFE 475 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~--~~~~l~v-~l~~ 475 (591)
...+|++++|.+.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.. ..++|+++|... +.....+ ..+.
T Consensus 324 ~~~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~--~~~igy~~Q~~~~~l~~~~~~~~~~~ 399 (638)
T PRK10636 324 DRIILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK--GIKLGYFAQHQLEFLRADESPLQHLA 399 (638)
T ss_pred CeeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC--CEEEEEecCcchhhCCccchHHHHHH
Confidence 3468999999999999 9999999999999999999999999999999863 247999999531 1111111 1010
Q ss_pred cCCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHH
Q 007747 476 KGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 553 (591)
..........+..++..+.... .+..+..+|||+++|+.|+++|+ .+|+++|| ||||+|||+..+. .+.+.
T Consensus 400 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~-----~~p~lLlL-DEPt~~LD~~~~~-~l~~~ 472 (638)
T PRK10636 400 RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW-----QRPNLLLL-DEPTNHLDLDMRQ-ALTEA 472 (638)
T ss_pred HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHHH-HHHHH
Confidence 1111112234556666665532 35678899999999999999999 99999999 9999999999874 45566
Q ss_pred HHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 554 LADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|..+ ..++.+.+|-..-++.+||++..+
T Consensus 473 L~~~---~gtvi~vSHd~~~~~~~~d~i~~l 500 (638)
T PRK10636 473 LIDF---EGALVVVSHDRHLLRSTTDDLYLV 500 (638)
T ss_pred HHHc---CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 7665 124444445555577788877654
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.81 E-value=2e-19 Score=186.22 Aligned_cols=166 Identities=15% Similarity=0.155 Sum_probs=111.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhc---ccceeec
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL---QVPIFEK 476 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l---~v~l~~~ 476 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|..|+|.+.+ ++++++|...+.... ++.+. .
T Consensus 50 ~~vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----~i~yv~q~~~l~~~tv~enl~~~-~ 122 (282)
T cd03291 50 APVLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----RISFSSQFSWIMPGTIKENIIFG-V 122 (282)
T ss_pred ccceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----EEEEEeCcccccccCHHHHhhcc-c
Confidence 358999999999999 9999999999999999999999999999999977 689999976433211 11110 0
Q ss_pred CCCCCHHHHHHHHHHHhhhc--------C----CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 477 GYEKDPAIVAKEAIQEATRN--------G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 477 ~~~~d~~~~a~~al~~~~~~--------~----~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
.+ ... .+.+++..+.+. . .+.....+|||++|++.|+++|+ .+|+++|| ||||+|||+.
T Consensus 123 ~~--~~~-~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p~iLiL-DEPt~gLD~~ 193 (282)
T cd03291 123 SY--DEY-RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY-----KDADLYLL-DSPFGYLDVF 193 (282)
T ss_pred cc--CHH-HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCccCCHH
Confidence 01 111 111222211110 0 11224589999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
.+...+..++..+.. ..++.+.+|-+..+. .+|++..
T Consensus 194 ~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~-~~d~i~~ 230 (282)
T cd03291 194 TEKEIFESCVCKLMA-NKTRILVTSKMEHLK-KADKILI 230 (282)
T ss_pred HHHHHHHHHHHHhhC-CCEEEEEeCChHHHH-hCCEEEE
Confidence 875433333444432 333444444444443 3555533
No 313
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.81 E-value=2e-19 Score=203.24 Aligned_cols=144 Identities=18% Similarity=0.150 Sum_probs=111.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++||++++|+ .++|+||+||||||+++.|+|++ |+.|+|.++|.|.. .+++|+|...+
T Consensus 363 ~~vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI 439 (588)
T PRK11174 363 KTLAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL 439 (588)
T ss_pred CeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCH
Confidence 468999999999999 99999999999999999999999 99999999998862 49999998643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+|+ .+... ..++ +.+.++++.+.. .++|..+ ..+|||++||++|||+|. .+|+++||
T Consensus 440 ~eNI--~~g~~--~~~~-eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll-----~~~~IliL 509 (588)
T PRK11174 440 RDNV--LLGNP--DASD-EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL-----QPCQLLLL 509 (588)
T ss_pred HHHh--hcCCC--CCCH-HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 3333 22211 1122 233444444332 2456554 348999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||+++|+......+ +.|..+.
T Consensus 510 -DE~TSaLD~~te~~i~-~~l~~~~ 532 (588)
T PRK11174 510 -DEPTASLDAHSEQLVM-QALNAAS 532 (588)
T ss_pred -eCCccCCCHHHHHHHH-HHHHHHh
Confidence 9999999999875444 6676664
No 314
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.80 E-value=1.5e-19 Score=206.26 Aligned_cols=171 Identities=14% Similarity=0.108 Sum_probs=123.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhh-h------hhhccc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-H------ARRLQV 471 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~-~------~~~l~v 471 (591)
...+|++++|.+.+|+ +++|+|||||||||||++|+|++.|+.|+|.+ +.+ .++|+++|... + .+++..
T Consensus 331 ~~~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~-~~i~y~~q~~~~l~~~~tv~e~l~~ 406 (635)
T PRK11147 331 GKQLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK-LEVAYFDQHRAELDPEKTVMDNLAE 406 (635)
T ss_pred CeEEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC-cEEEEEeCcccccCCCCCHHHHHHh
Confidence 3468999999999999 99999999999999999999999999999988 544 47999999641 2 222221
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
....... ......+...+..+.... .+..+..+||||++|+.|+++|+ .+|+++|| ||||+|||+..+ ..
T Consensus 407 ~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~-----~~p~lLlL-DEPt~~LD~~~~-~~ 478 (635)
T PRK11147 407 GKQEVMV-NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL-----KPSNLLIL-DEPTNDLDVETL-EL 478 (635)
T ss_pred hcccccc-cchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHH-HH
Confidence 1110000 111223444555544421 35678899999999999999999 99999999 999999999986 44
Q ss_pred HHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.+.|..+ ..++.+.+|-..-++.+|+++..+
T Consensus 479 l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l 510 (635)
T PRK11147 479 LEELLDSY---QGTVLLVSHDRQFVDNTVTECWIF 510 (635)
T ss_pred HHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEE
Confidence 55666554 224455555555667777776554
No 315
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.2e-19 Score=169.20 Aligned_cols=131 Identities=27% Similarity=0.317 Sum_probs=105.7
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce---------eeeecchhhhhhhccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLRTHARRLQV 471 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R---------igaveQl~~~~~~l~v 471 (591)
.+++++++++.+|+ +++|+|+||+||||+++.|+|.+.+..|+|.+.+.+... +++++|
T Consensus 13 ~~l~~~~~~i~~g~--~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q---------- 80 (157)
T cd00267 13 TALDNVSLTLKAGE--IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ---------- 80 (157)
T ss_pred eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee----------
Confidence 58999999999999 999999999999999999999999999999998876421 222222
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
+||||++++.++++|+ .+|++++| ||||+|+|...+ ..+.
T Consensus 81 ---------------------------------lS~G~~~r~~l~~~l~-----~~~~i~il-DEp~~~lD~~~~-~~l~ 120 (157)
T cd00267 81 ---------------------------------LSGGQRQRVALARALL-----LNPDLLLL-DEPTSGLDPASR-ERLL 120 (157)
T ss_pred ---------------------------------CCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCHHHH-HHHH
Confidence 9999999999999999 99999999 999999999886 4555
Q ss_pred HHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+.+..+.....++.+.+|-..-+..++|++..
T Consensus 121 ~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~ 152 (157)
T cd00267 121 ELLRELAEEGRTVIIVTHDPELAELAADRVIV 152 (157)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 77777765434444455555555665566544
No 316
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.80 E-value=2.4e-19 Score=205.27 Aligned_cols=159 Identities=21% Similarity=0.167 Sum_probs=117.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~~l- 469 (591)
..+|+++|+++++|+ .++|||+|||||||+++.|+|++.|..|+|.++|.|. ..+|+|+|...+...-
T Consensus 486 ~~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI 563 (709)
T COG2274 486 PPVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSI 563 (709)
T ss_pred cchhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcH
Confidence 479999999999999 9999999999999999999999999999999999987 2499999977542221
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
|+.+.... .+. +.+.+|+..++. .+|+..+. .+|||||||++|||+|. .+|.++|| |
T Consensus 564 ~eNi~l~~p~--~~~-e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl-----~~P~ILlL-D 634 (709)
T COG2274 564 RENIALGNPE--ATD-EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL-----SKPKILLL-D 634 (709)
T ss_pred HHHHhcCCCC--CCH-HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc-----cCCCEEEE-e
Confidence 23222111 111 223333333322 24555553 37999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
|||++||+....... +.|..+.. +.|.|++|.=+
T Consensus 635 EaTSaLD~~sE~~I~-~~L~~~~~-----~~T~I~IaHRl 668 (709)
T COG2274 635 EATSALDPETEAIIL-QNLLQILQ-----GRTVIIIAHRL 668 (709)
T ss_pred CcccccCHhHHHHHH-HHHHHHhc-----CCeEEEEEccc
Confidence 999999999975544 56655543 34555555433
No 317
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.80 E-value=1.4e-19 Score=190.83 Aligned_cols=158 Identities=20% Similarity=0.110 Sum_probs=114.3
Q ss_pred EEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhcc----cceeecCCCCCH---HHH
Q 007747 420 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ----VPIFEKGYEKDP---AIV 485 (591)
Q Consensus 420 LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l~----v~l~~~~~~~d~---~~~ 485 (591)
|+|||||||||||++|+|++.|+.|+|.+.|.++. ++|+++|...+...+. +.+....++... ...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999999999999999997752 4899999754333221 111111111121 234
Q ss_pred HHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCC
Q 007747 486 AKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNP 563 (591)
Q Consensus 486 a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~ 563 (591)
+.++++.+++..+ +..+..+||||+||+.|+|+|+ .+|+++|| ||||+|||+..+. .+.+.|..+... +.+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~-----~~p~lllL-DEP~s~LD~~~~~-~l~~~l~~l~~~~g~t 153 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALV-----FKPKILLL-DEPLSALDKKLRD-QMQLELKTIQEQLGIT 153 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCCccCCHHHHH-HHHHHHHHHHHhcCCE
Confidence 5556666665543 6778899999999999999999 99999999 9999999999874 455777777543 444
Q ss_pred ccceEEEeccccccCCcEEEE
Q 007747 564 QLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 564 ~~it~IIlTK~D~i~d~vGal 584 (591)
+.+.+|-+..+..++|++..+
T Consensus 154 iiivTHd~~e~~~~~d~i~vl 174 (325)
T TIGR01187 154 FVFVTHDQEEAMTMSDRIAIM 174 (325)
T ss_pred EEEEeCCHHHHHHhCCEEEEE
Confidence 555555555566677877554
No 318
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.80 E-value=1.3e-19 Score=203.53 Aligned_cols=171 Identities=19% Similarity=0.142 Sum_probs=120.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhh------hcccce
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR------RLQVPI 473 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~------~l~v~l 473 (591)
..+|+++||++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+. .++|+++|...+.. ++...+
T Consensus 18 ~~il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~~~~~tv~e~i~~~~ 93 (552)
T TIGR03719 18 KEILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--IKVGYLPQEPQLDPTKTVRENVEEGV 93 (552)
T ss_pred CeeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCCCCCCcHHHHHHHhh
Confidence 468999999999999 99999999999999999999999999999998642 46999999754332 222111
Q ss_pred ee-c-------------CCCCCH-----------------------HHHHHHHHHHhhhcCCCcchhccchhHHHHHHHH
Q 007747 474 FE-K-------------GYEKDP-----------------------AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM 516 (591)
Q Consensus 474 ~~-~-------------~~~~d~-----------------------~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~La 516 (591)
.. . ...... ...+.++++.+++...+..+.++||||+||+.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la 173 (552)
T TIGR03719 94 AEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALC 173 (552)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHH
Confidence 00 0 000010 0122233343333234667889999999999999
Q ss_pred HHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 517 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 517 raL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++|+ .+|+++|| ||||++||+..+. .+.+.|..+ ..++.+.+|-+.-++.++|++-.|
T Consensus 174 ~al~-----~~p~lLLL-DEPt~~LD~~~~~-~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 174 RLLL-----SKPDMLLL-DEPTNHLDAESVA-WLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred HHHh-----cCCCEEEE-cCCCCCCChHHHH-HHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 9999 99999999 9999999999874 344555544 224444455555566677766543
No 319
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.80 E-value=1.6e-19 Score=165.46 Aligned_cols=123 Identities=28% Similarity=0.290 Sum_probs=100.0
Q ss_pred ccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhcccce
Q 007747 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQVPI 473 (591)
Q Consensus 403 L~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l~v~l 473 (591)
|+++++.+.+|+ +++|+|+||+||||+++.|+|.+.|..|.|.+.+.++. ++++++|...+...+.+.-
T Consensus 1 L~~v~~~i~~g~--~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGE--IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTS--EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCC--EEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999999 99999999999999999999999999999999988763 3888888766555443321
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcCC-Ccch----hccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 474 FEKGYEKDPAIVAKEAIQEATRNGS-DVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 474 ~~~~~~~d~~~~a~~al~~~~~~~~-d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
. .....+.++++.+....+ +..+ ..+|||++|++.|+++|. .+|+++|| ||||+
T Consensus 79 ~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~-----~~~~llll-DEPt~ 137 (137)
T PF00005_consen 79 N------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALL-----KNPKLLLL-DEPTN 137 (137)
T ss_dssp H------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHH-----TTSSEEEE-ESTTT
T ss_pred c------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHH-----cCCCEEEE-eCCCC
Confidence 1 223455667777665543 4444 899999999999999999 99999999 99996
No 320
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.8e-19 Score=171.96 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=120.0
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceee--eecchh-----------
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG--AVEQLR----------- 463 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Rig--aveQl~----------- 463 (591)
.....++.+++|++.+|+ .+.|.||||+||||||++|||++.|..|+|.+.++.+-+.. +.+-+-
T Consensus 12 R~e~~lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 12 RGERTLFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred cCcceeecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 344568899999999999 99999999999999999999999999999999987663211 111111
Q ss_pred -hhhhhcccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 464 -THARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 464 -~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
+..+ |+.|+...++.-....+.+|++.+++.++ |..+..+|-|||+|++|||-+. ..+++.|| |||++++
T Consensus 90 LTa~E--NL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~l-----s~~pLWiL-DEP~taL 161 (209)
T COG4133 90 LTALE--NLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWL-----SPAPLWIL-DEPFTAL 161 (209)
T ss_pred hhHHH--HHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHc-----CCCCceee-cCccccc
Confidence 1222 33455444443334556788999998887 7888999999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCC
Q 007747 542 DAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~ 561 (591)
|.... ..|+..+......+
T Consensus 162 Dk~g~-a~l~~l~~~H~~~G 180 (209)
T COG4133 162 DKEGV-ALLTALMAAHAAQG 180 (209)
T ss_pred CHHHH-HHHHHHHHHHhcCC
Confidence 99875 56777776665543
No 321
>PRK13409 putative ATPase RIL; Provisional
Probab=99.79 E-value=1.6e-19 Score=204.20 Aligned_cols=186 Identities=17% Similarity=0.111 Sum_probs=131.3
Q ss_pred HHHHHHHHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEE-----------Ecccccc
Q 007747 386 MEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTF 454 (591)
Q Consensus 386 l~~~L~~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~-----------i~~~Dt~ 454 (591)
|.+.++.-+++ ...+|++++ .+.+|+ +++|+||||+||||+|++|+|++.|+.|+|. +.|.++.
T Consensus 75 ~~~~~~~~yg~--~~~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 75 LEEEPVHRYGV--NGFKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred hccCceEEecC--CceeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHH
Confidence 44444444432 134799999 899999 9999999999999999999999999999997 7776641
Q ss_pred -----------eeeeecchhhhhhhc-ccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHh
Q 007747 455 -----------RSGAVEQLRTHARRL-QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSK 521 (591)
Q Consensus 455 -----------RigaveQl~~~~~~l-~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~k 521 (591)
++++..|.......+ .-.+.......+....+.++++.+++... +..+.++||||+|++.||++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~- 228 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALL- 228 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-
Confidence 234444422111111 00000000001222345566666665443 7788899999999999999999
Q ss_pred chhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 522 LIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 522 l~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+|+++|| ||||++||+..+.. +.+.|..+.. +.++.+..|-+.-++.++|++-.+
T Consensus 229 ----~~p~lllL-DEPts~LD~~~~~~-l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 229 ----RDADFYFF-DEPTSYLDIRQRLN-VARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred ----cCCCEEEE-ECCCCCCCHHHHHH-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999 99999999998754 4478888876 666777777777888888887543
No 322
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3e-19 Score=199.47 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=115.0
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARR 468 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~~ 468 (591)
....+|+|+||++++|+ +++||||+|+||||.++.|-.+|.|++|+|+++|.|+ ..+|.|.|.+.+...
T Consensus 479 p~~~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~ 556 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG 556 (716)
T ss_pred CCchhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc
Confidence 35679999999999999 9999999999999999999999999999999999998 249999998865332
Q ss_pred c---ccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 469 L---QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 469 l---~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
- ||.+- .. ..+. +.+..|.+.++. ++|+..+ ..+||||+||++|||||. .+|.++||
T Consensus 557 sI~eNI~YG-~~-~~t~-e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl-----r~P~VLIL 628 (716)
T KOG0058|consen 557 SIRENIAYG-LD-NATD-EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL-----RNPRVLIL 628 (716)
T ss_pred cHHHHHhcC-CC-CCCH-HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh-----cCCCEEEE
Confidence 1 22221 11 1222 223333333322 3455444 357999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
||+|++||+... ...+++|..+.+.
T Consensus 629 -DEATSALDaeSE-~lVq~aL~~~~~~ 653 (716)
T KOG0058|consen 629 -DEATSALDAESE-YLVQEALDRLMQG 653 (716)
T ss_pred -echhhhcchhhH-HHHHHHHHHhhcC
Confidence 999999999886 4556777666554
No 323
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.79 E-value=2e-19 Score=193.64 Aligned_cols=175 Identities=18% Similarity=0.129 Sum_probs=131.1
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~ 467 (591)
..+.++++|+|++.+|+ |.+|+|.||||||||+++|.|+++|+.|+|.+.|..+. .||.|.|-..+.+
T Consensus 15 ~~~~And~V~l~v~~Ge--IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 15 PGVVANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CCEEecCceeeeecCCc--EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 36788999999999999 99999999999999999999999999999999998772 3999999887766
Q ss_pred hccc----ceee---cCCCCCHHH---HHHHHHHHhhh-cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 468 RLQV----PIFE---KGYEKDPAI---VAKEAIQEATR-NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 468 ~l~v----~l~~---~~~~~d~~~---~a~~al~~~~~-~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
.+.+ -+-. .+...+... .+.+..+..++ -+.+.++.|+|-|+|||+.|.++|. .+|+++|| ||
T Consensus 93 ~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy-----r~a~iLIL-DE 166 (501)
T COG3845 93 TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY-----RGARLLIL-DE 166 (501)
T ss_pred ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh-----cCCCEEEE-cC
Confidence 6622 1111 111112222 23333333322 1346888999999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
||+-|-|.+....| +.|+.+...++++.+-+|=+..+=.+||++
T Consensus 167 PTaVLTP~E~~~lf-~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrv 210 (501)
T COG3845 167 PTAVLTPQEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRV 210 (501)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeccHHHHHHhhCee
Confidence 99999999876555 899999988766553333333333345543
No 324
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.79 E-value=3.8e-19 Score=205.30 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=109.7
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l 469 (591)
...+|+++||++++|+ .++|+|+|||||||+++.|+|++.|+.|+|.++|.|+. ++|+|+|...+...-
T Consensus 491 ~~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gT 568 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGT 568 (710)
T ss_pred CCCcccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhcc
Confidence 3568999999999999 99999999999999999999999999999999998862 499999987442211
Q ss_pred ---ccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 470 ---QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 470 ---~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
|+.+... ..+. +.+.++++.+.. .+++..+. .+||||+||+.|||+|. .+|+++||
T Consensus 569 i~eNi~l~~~--~~~~-~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall-----~~p~iliL- 639 (710)
T TIGR03796 569 VRDNLTLWDP--TIPD-ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV-----RNPSILIL- 639 (710)
T ss_pred HHHHhhCCCC--CCCH-HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh-----hCCCEEEE-
Confidence 2322211 1122 223444444332 24455443 48999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHH
Q 007747 535 GEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~ 555 (591)
||||++||+..... +.+.|.
T Consensus 640 DEptS~LD~~te~~-i~~~l~ 659 (710)
T TIGR03796 640 DEATSALDPETEKI-IDDNLR 659 (710)
T ss_pred ECccccCCHHHHHH-HHHHHH
Confidence 99999999988644 334443
No 325
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.3e-19 Score=177.07 Aligned_cols=174 Identities=20% Similarity=0.203 Sum_probs=124.3
Q ss_pred HHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecc
Q 007747 392 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQ 461 (591)
Q Consensus 392 ~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQ 461 (591)
++.-.+....||++|++++++|+ -.+|+|||||||||||+.+++.+.|..|.|.+.|...- +||+|.-
T Consensus 36 ~v~v~r~gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~ 113 (257)
T COG1119 36 NVSVRRNGKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSS 113 (257)
T ss_pred ceEEEECCEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCH
Confidence 33334556789999999999999 99999999999999999999999999999998875431 3565542
Q ss_pred hh--hhhhhc---c---------cceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcC
Q 007747 462 LR--THARRL---Q---------VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (591)
Q Consensus 462 l~--~~~~~l---~---------v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~ 526 (591)
-- .+..+. . +.+|...+.......+...++.+..... +..+..+|-|+++++.|||||+ .
T Consensus 114 ~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv-----~ 188 (257)
T COG1119 114 ELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALV-----K 188 (257)
T ss_pred HHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHh-----c
Confidence 11 111111 1 1112111222223455556666666544 7889999999999999999999 9
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 527 ~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
+|.++|| |||+.|||...+. .+.+.|.++... .-..+.+++|...+
T Consensus 189 ~P~LLiL-DEP~~GLDl~~re-~ll~~l~~~~~~--~~~~~ll~VtHh~e 234 (257)
T COG1119 189 DPELLIL-DEPAQGLDLIARE-QLLNRLEELAAS--PGAPALLFVTHHAE 234 (257)
T ss_pred CCCEEEe-cCccccCChHHHH-HHHHHHHHHhcC--CCCceEEEEEcchh
Confidence 9999999 9999999999874 455666666543 22456677777654
No 326
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.79 E-value=2.6e-19 Score=204.35 Aligned_cols=171 Identities=16% Similarity=0.135 Sum_probs=118.7
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh------hhh----
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH------ARR---- 468 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~------~~~---- 468 (591)
...+|++|||.+.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+. .++++++|.... .+.
T Consensus 15 ~~~il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~--~~~~~l~q~~~~~~~~~v~~~~~~~ 90 (635)
T PRK11147 15 DAPLLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD--LIVARLQQDPPRNVEGTVYDFVAEG 90 (635)
T ss_pred CceeEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC--CEEEEeccCCCCCCCCCHHHHHHHh
Confidence 3468999999999999 99999999999999999999999999999998752 123444432100 000
Q ss_pred -------------cc-----------ccee-------ecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHH
Q 007747 469 -------------LQ-----------VPIF-------EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMR 517 (591)
Q Consensus 469 -------------l~-----------v~l~-------~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~Lar 517 (591)
+. +..+ ....+......+.++++.+++. .+..+.++|||++||+.||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LAr 169 (635)
T PRK11147 91 IEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLRKAALGR 169 (635)
T ss_pred hHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHHH
Confidence 00 0000 0000111223445556555543 36778899999999999999
Q ss_pred HHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 518 ALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 518 aL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|+ .+|+++|| ||||++||+..+. .+.+.|..+. .++.+.+|-..-+|.+||++..|
T Consensus 170 aL~-----~~P~lLLL-DEPt~~LD~~~~~-~L~~~L~~~~---~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 170 ALV-----SNPDVLLL-DEPTNHLDIETIE-WLEGFLKTFQ---GSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred HHh-----cCCCEEEE-cCCCCccCHHHHH-HHHHHHHhCC---CEEEEEeCCHHHHHHhcCeEEEE
Confidence 999 99999999 9999999999874 4445665542 24444555555667778877554
No 327
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.79 E-value=5.7e-19 Score=197.12 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=111.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++++++++|+ .++|+||||+||||+++.|+|++.|+.|+|.+.+.|+. ++|+++|...+
T Consensus 335 ~~il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti 412 (529)
T TIGR02857 335 APALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI 412 (529)
T ss_pred cccccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCH
Confidence 468999999999999 99999999999999999999999999999999998762 48999998643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++.. ... ..+. +...++++.++. .++|..+ ..+|||++||+.+||+|. .+|+++||
T Consensus 413 ~~Ni~~--~~~--~~~~-~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~-----~~~~ilil 482 (529)
T TIGR02857 413 AENIRL--ARP--DASD-AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL-----RDAPLLLL 482 (529)
T ss_pred HHHHhc--cCC--CCCH-HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 333322 111 1112 233444444332 2345443 458999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||+++|+......+ +.+..+.
T Consensus 483 -DE~ts~lD~~~~~~i~-~~l~~~~ 505 (529)
T TIGR02857 483 -DEPTAHLDAETEALVT-EALRALA 505 (529)
T ss_pred -eCcccccCHHHHHHHH-HHHHHhc
Confidence 9999999999975443 6665553
No 328
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.79 E-value=5.6e-19 Score=203.19 Aligned_cols=144 Identities=27% Similarity=0.200 Sum_probs=111.5
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh----
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH---- 465 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~---- 465 (591)
...+|+++||++++|+ .++|+|+|||||||+++.|+|++.|+.|+|.++|.|+. ++|+|+|...+
T Consensus 465 ~~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gT 542 (686)
T TIGR03797 465 GPLILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGS 542 (686)
T ss_pred CccceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCccc
Confidence 3568999999999999 99999999999999999999999999999999998872 49999998754
Q ss_pred -hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 466 -ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 466 -~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
.+|+. +... .+. +.+.++++.+.. .++|..+ ..+|||++||+.|||+|. .+|+++|
T Consensus 543 I~eNi~--~~~~---~~~-e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll-----~~p~iLi 611 (686)
T TIGR03797 543 IFENIA--GGAP---LTL-DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV-----RKPRILL 611 (686)
T ss_pred HHHHHh--cCCC---CCH-HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh-----cCCCEEE
Confidence 34332 2211 122 223445544432 2345444 358999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHh
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADL 557 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l 557 (591)
| ||||+++|+..... +.+.|..+
T Consensus 612 L-DEpTS~LD~~te~~-i~~~L~~~ 634 (686)
T TIGR03797 612 F-DEATSALDNRTQAI-VSESLERL 634 (686)
T ss_pred E-eCCccCCCHHHHHH-HHHHHHHh
Confidence 9 99999999998754 44555544
No 329
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.78 E-value=8.4e-19 Score=197.82 Aligned_cols=146 Identities=22% Similarity=0.259 Sum_probs=111.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhh-----h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRT-----H 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~-----~ 465 (591)
..+|+++++++++|+ .++|+|+||+||||+++.|+|++.|+.|+|.++|.|+ -++++++|... .
T Consensus 356 ~~il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti 433 (582)
T PRK11176 356 VPALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTI 433 (582)
T ss_pred CccccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchH
Confidence 568999999999999 9999999999999999999999999999999999876 24899999764 3
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++.+. . ....++. .+.++++.++. .++|..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 434 ~~Ni~~~--~-~~~~~~~-~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall-----~~~~ilil 504 (582)
T PRK11176 434 ANNIAYA--R-TEQYSRE-QIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL-----RDSPILIL 504 (582)
T ss_pred HHHHhcC--C-CCCCCHH-HHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 4443221 1 1111222 23344444321 2345544 348999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||++||+..... +.+.|..+.
T Consensus 505 -DEptsaLD~~t~~~-i~~~l~~~~ 527 (582)
T PRK11176 505 -DEATSALDTESERA-IQAALDELQ 527 (582)
T ss_pred -ECccccCCHHHHHH-HHHHHHHHh
Confidence 99999999998754 446666654
No 330
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=7.9e-19 Score=198.20 Aligned_cols=168 Identities=19% Similarity=0.173 Sum_probs=120.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l- 469 (591)
..+|++++|++++|+ +++|+||||+||||+++.|+|++.|+.|+|.++|.|+. .+++++|...+...-
T Consensus 353 ~~il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti 430 (574)
T PRK11160 353 QPVLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATL 430 (574)
T ss_pred CcceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccH
Confidence 458999999999999 99999999999999999999999999999999998862 389999987542211
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhhc-------CCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATRN-------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~~-------~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
|+.+... ..+. +.+.++++.++.. ++|..+ ..+|||++||+.|||+|. .+|+++|| ||
T Consensus 431 ~~Ni~~~~~--~~~~-~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall-----~~~~ilil-DE 501 (574)
T PRK11160 431 RDNLLLAAP--NASD-EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL-----HDAPLLLL-DE 501 (574)
T ss_pred HHHhhcCCC--ccCH-HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-eC
Confidence 2222111 1122 2344555554432 344433 458999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
||+++|+.... .+.+.|..+.. ++++.+..|-++-+.. +|++
T Consensus 502 ~ts~lD~~t~~-~i~~~l~~~~~-~~tviiitHr~~~~~~-~d~i 543 (574)
T PRK11160 502 PTEGLDAETER-QILELLAEHAQ-NKTVLMITHRLTGLEQ-FDRI 543 (574)
T ss_pred CcccCCHHHHH-HHHHHHHHHcC-CCEEEEEecChhHHHh-CCEE
Confidence 99999999864 45567766643 2333333333333333 4544
No 331
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.78 E-value=1e-18 Score=201.36 Aligned_cols=146 Identities=22% Similarity=0.222 Sum_probs=112.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++++|++++|+ .++|+|+|||||||+++.|+|++.|+.|+|.++|.|+. .+|+|+|...+
T Consensus 478 ~~vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI 555 (694)
T TIGR03375 478 TPALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTL 555 (694)
T ss_pred ccceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhH
Confidence 458999999999999 99999999999999999999999999999999998862 49999998654
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++. +... ..+. +.+.++++.+.. .+++..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 556 ~eNi~--~~~~--~~~~-~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall-----~~p~iliL 625 (694)
T TIGR03375 556 RDNIA--LGAP--YADD-EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL-----RDPPILLL 625 (694)
T ss_pred HHHHh--CCCC--CCCH-HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 44332 2211 1122 223444444322 2445444 458999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
||||+++|+.... .+.+.|..+..
T Consensus 626 -DE~Ts~LD~~te~-~i~~~l~~~~~ 649 (694)
T TIGR03375 626 -DEPTSAMDNRSEE-RFKDRLKRWLA 649 (694)
T ss_pred -eCCCCCCCHHHHH-HHHHHHHHHhC
Confidence 9999999999864 44466766643
No 332
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.78 E-value=5.7e-19 Score=194.18 Aligned_cols=173 Identities=20% Similarity=0.174 Sum_probs=132.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----------ceeeeecchhh---
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT--- 464 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----------~RigaveQl~~--- 464 (591)
.+.++++|||.+.+|+ +++|||++||||||+.+.|+|++.|++|.|.+.|.|+ .++-.++|.+.
T Consensus 303 ~~~Av~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SL 380 (539)
T COG1123 303 EVKAVDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380 (539)
T ss_pred ceeeeeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCccccc
Confidence 4678999999999999 9999999999999999999999999999999999872 13667888653
Q ss_pred -----hhhhcccceeecCC--CCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 465 -----HARRLQVPIFEKGY--EKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 465 -----~~~~l~v~l~~~~~--~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
..+.+.-|+..... .......+.+.++...+.. .+.++..+|||++||++|||+|+ .+|.+|++ |
T Consensus 381 nPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa-----~~P~lli~-D 454 (539)
T COG1123 381 NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA-----LEPKLLIL-D 454 (539)
T ss_pred CccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHh-----cCCCEEEe-c
Confidence 23333333321111 1222244556666665543 47889999999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec----cccccCCcEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT----KFDTIDDKHYQ 583 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT----K~D~i~d~vGa 583 (591)
||++.||+..|...+ +.|.++..+ .+++.+++| -+..+||++..
T Consensus 455 Ep~SaLDvsvqa~Vl-nLl~~lq~e---~g~t~lfISHDl~vV~~i~drv~v 502 (539)
T COG1123 455 EPVSALDVSVQAQVL-NLLKDLQEE---LGLTYLFISHDLAVVRYIADRVAV 502 (539)
T ss_pred CCccccCHHHHHHHH-HHHHHHHHH---hCCEEEEEeCCHHHHHhhCceEEE
Confidence 999999999998776 667777654 345554444 46777888765
No 333
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.78 E-value=1e-18 Score=195.89 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=119.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l- 469 (591)
..+|++++|++++|+ .++|+||||+||||+++.|+|++.|..|+|.+.|.++. ++++++|...+...-
T Consensus 331 ~~~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti 408 (544)
T TIGR01842 331 KPTLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTV 408 (544)
T ss_pred ccccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccH
Confidence 468999999999999 99999999999999999999999999999999998762 489999976442211
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcc----hhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~v----liDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
++.++.. ..+.. ...++++.+.. .+++.. ...+||||+||+.|||+|. .+|+++|| |
T Consensus 409 ~~Ni~~~~~--~~~~~-~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall-----~~~~ilil-D 479 (544)
T TIGR01842 409 AENIARFGE--NADPE-KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY-----GDPKLVVL-D 479 (544)
T ss_pred HHHHhccCC--CCCHH-HHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 2222211 11222 22223332211 133432 4568999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|||+++|+... ..+.+.|..+...++++.+..|-+.-++. +|++-.
T Consensus 480 Epts~LD~~~~-~~i~~~l~~~~~~~~tvi~ith~~~~~~~-~d~i~~ 525 (544)
T TIGR01842 480 EPNSNLDEEGE-QALANAIKALKARGITVVVITHRPSLLGC-VDKILV 525 (544)
T ss_pred CCccccCHHHH-HHHHHHHHHHhhCCCEEEEEeCCHHHHHh-CCEEEE
Confidence 99999999886 44557777665433444444444433433 455433
No 334
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=1.1e-18 Score=204.47 Aligned_cols=147 Identities=26% Similarity=0.325 Sum_probs=112.4
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l 469 (591)
.+.||+++||.+++|+ .++||||+||||||++..|.+++.|+.|+|+|+|.|+. ++|.|+|.+.+..--
T Consensus 365 dv~Il~g~sl~i~~G~--~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~t 442 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQ--TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATT 442 (1228)
T ss_pred cchhhCCeEEEeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhccc
Confidence 4789999999999999 99999999999999999999999999999999999983 599999988542211
Q ss_pred ---ccceeecCCCCCH--HHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 470 ---QVPIFEKGYEKDP--AIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 470 ---~v~l~~~~~~~d~--~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
|+. |+... .....+|.+.++. .+++..+ ..+||||+||++|||+|. .+|+++|
T Consensus 443 I~eNI~-----~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv-----~~P~ILL 512 (1228)
T KOG0055|consen 443 IRENIR-----YGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV-----RNPKILL 512 (1228)
T ss_pred HHHHHh-----cCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH-----hCCCEEE
Confidence 222 22211 1223333332221 2344333 348999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
| ||||++||+.+. ...+++|...+.
T Consensus 513 L-DEaTSaLD~~se-~~Vq~ALd~~~~ 537 (1228)
T KOG0055|consen 513 L-DEATSALDAESE-RVVQEALDKASK 537 (1228)
T ss_pred e-cCcccccCHHHH-HHHHHHHHHhhc
Confidence 9 999999999986 556677765554
No 335
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.78 E-value=1.5e-18 Score=195.23 Aligned_cols=170 Identities=17% Similarity=0.114 Sum_probs=117.7
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQV 471 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l~v 471 (591)
.+|+++||++++|+ +++|+||||+||||+++.|+|++.|+.|+|.+.|.|+. .+++++|...+.... +
T Consensus 356 ~~l~~vs~~i~~G~--~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~t-i 432 (555)
T TIGR01194 356 FALGPIDLRIAQGD--IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDL-I 432 (555)
T ss_pred ceeccceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhh-h
Confidence 58999999999999 99999999999999999999999999999999998862 388999976543321 1
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcC--------CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNG--------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~--------~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
. .........+.+.++++.++... ++. ...+|||++||++|+|+|. .+|+++|| ||||+++|+
T Consensus 433 ~--~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall-----~~~~ilil-DE~ts~LD~ 503 (555)
T TIGR01194 433 G--PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWL-----EDRPILLF-DEWAADQDP 503 (555)
T ss_pred h--cccccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccCCCH
Confidence 0 00111112233445565554332 222 2679999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
......++..+..+...++++.+.+|-.+-++ .+|++-.
T Consensus 504 ~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~ 542 (555)
T TIGR01194 504 AFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIK 542 (555)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEE
Confidence 98754443334344333333333333222233 3555533
No 336
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1e-18 Score=177.15 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=123.0
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCC
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 478 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~ 478 (591)
.+.++++|||++.+|+ +++|||.+||||||+-+.|.+++.|++|+|.+.|.|.....
T Consensus 25 ~v~avd~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------------------- 81 (268)
T COG4608 25 YVKAVDGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------------------- 81 (268)
T ss_pred ceEEecceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---------------------
Confidence 3678999999999999 99999999999999999999999999999999999964332
Q ss_pred CCCHHHHHHHHHHHhhhc--CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q 007747 479 EKDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (591)
Q Consensus 479 ~~d~~~~a~~al~~~~~~--~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~ 556 (591)
.....+.+.+.++.+++. .+...+..+|||++||+.+||||+ .+|+++++ |||++.||...|.+.. ..|.+
T Consensus 82 ~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa-----l~P~liV~-DEpvSaLDvSiqaqIl-nLL~d 154 (268)
T COG4608 82 KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA-----LNPKLIVA-DEPVSALDVSVQAQIL-NLLKD 154 (268)
T ss_pred hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh-----hCCcEEEe-cCchhhcchhHHHHHH-HHHHH
Confidence 111223455566655433 246888999999999999999999 99999999 9999999999887666 66777
Q ss_pred hhcCC-CCccceEEEeccccccCCcEEE
Q 007747 557 LSSSP-NPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 557 l~~~~-~~~~it~IIlTK~D~i~d~vGa 583 (591)
+.... -+...-+|.+..+--++|+++.
T Consensus 155 lq~~~~lt~lFIsHDL~vv~~isdri~V 182 (268)
T COG4608 155 LQEELGLTYLFISHDLSVVRYISDRIAV 182 (268)
T ss_pred HHHHhCCeEEEEEEEHHhhhhhcccEEE
Confidence 76542 2333445666666777777665
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=99.78 E-value=6.9e-19 Score=202.82 Aligned_cols=169 Identities=15% Similarity=0.127 Sum_probs=121.1
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhh----hhcccceeec
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA----RRLQVPIFEK 476 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~----~~l~v~l~~~ 476 (591)
.+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+. .++|+++|..... .+..+.+. .
T Consensus 523 ~il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~igyv~Q~~~~~l~~~~~~~~~~~-~ 597 (718)
T PLN03073 523 LLFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQHHVDGLDLSSNPLLYMM-R 597 (718)
T ss_pred eeEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--eeEEEEeccccccCCcchhHHHHHH-H
Confidence 48999999999999 99999999999999999999999999999988653 4799999964211 11001110 1
Q ss_pred CCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q 007747 477 GYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (591)
Q Consensus 477 ~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L 554 (591)
.+.......+..++..+.+.+ .+..+..+||||+||+.|+++|. .+|+++|| ||||+|||+..+.. +.+.|
T Consensus 598 ~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~-----~~p~lLLL-DEPT~~LD~~s~~~-l~~~L 670 (718)
T PLN03073 598 CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-----KKPHILLL-DEPSNHLDLDAVEA-LIQGL 670 (718)
T ss_pred hcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHHHH-HHHHH
Confidence 111112334556676666542 35677899999999999999999 99999999 99999999988643 33444
Q ss_pred HHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 555 ADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+ ..++.+.+|-..-++.+||++..+
T Consensus 671 ~~~---~gtvIivSHd~~~i~~~~drv~~l 697 (718)
T PLN03073 671 VLF---QGGVLMVSHDEHLISGSVDELWVV 697 (718)
T ss_pred HHc---CCEEEEEECCHHHHHHhCCEEEEE
Confidence 433 123444445445566677776553
No 338
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=1.5e-18 Score=196.44 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=112.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++++|++++|+ .++|+|+||+||||+++.|+|++.|++|+|.++|.|.. ++++++|...+
T Consensus 354 ~~il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti 431 (592)
T PRK10790 354 NLVLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTF 431 (592)
T ss_pred CceeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchH
Confidence 458999999999999 99999999999999999999999999999999998762 49999998754
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+|+ .+.. ..+.. .+.++++.++. .++|..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 432 ~~NI--~~~~---~~~d~-~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl-----~~~~illl 500 (592)
T PRK10790 432 LANV--TLGR---DISEE-QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV-----QTPQILIL 500 (592)
T ss_pred HHHH--HhCC---CCCHH-HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 3333 3321 12222 23444444332 2345443 358999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
||||+++|+.... .+.+.|..+..
T Consensus 501 -DEpts~LD~~t~~-~i~~~l~~~~~ 524 (592)
T PRK10790 501 -DEATANIDSGTEQ-AIQQALAAVRE 524 (592)
T ss_pred -eCCcccCCHHHHH-HHHHHHHHHhC
Confidence 9999999998864 44566666643
No 339
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.77 E-value=1.6e-18 Score=196.11 Aligned_cols=145 Identities=19% Similarity=0.228 Sum_probs=110.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++++++++|+ .++|+|+||+|||||++.|+|++.|+.|.|.+.|.|.. ++++++|...+
T Consensus 348 ~~iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti 425 (588)
T PRK13657 348 RQGVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425 (588)
T ss_pred CceecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccH
Confidence 458999999999999 99999999999999999999999999999999998762 59999998743
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++ .+.. . ..++. .+..+++.+.+ .++|..+. .+|||++||+.|||+|. .+|+++||
T Consensus 426 ~~Ni--~~~~-~-~~~d~-~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall-----~~~~iliL 495 (588)
T PRK13657 426 EDNI--RVGR-P-DATDE-EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL-----KDPPILIL 495 (588)
T ss_pred HHHH--hcCC-C-CCCHH-HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 3333 2221 1 11222 23334433321 24555544 48999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||++||+..... +.+.|..+.
T Consensus 496 -DEpts~LD~~t~~~-i~~~l~~~~ 518 (588)
T PRK13657 496 -DEATSALDVETEAK-VKAALDELM 518 (588)
T ss_pred -eCCccCCCHHHHHH-HHHHHHHHh
Confidence 99999999988654 445555543
No 340
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.77 E-value=3.2e-18 Score=192.12 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=108.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhcc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ 470 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l~ 470 (591)
..+|++++|++++|+ .++|+||||+||||+++.|+|++.|+.|+|.+.|.|.. ++++++|...+....-
T Consensus 336 ~~~l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti 413 (547)
T PRK10522 336 GFSVGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL 413 (547)
T ss_pred CeEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhh
Confidence 358999999999999 99999999999999999999999999999999998862 4899999876543321
Q ss_pred cceeecCCCCCHHHHHHHHHHHhhhcCC-Ccc-----hhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 471 VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVV-----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 471 v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~v-----liDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
...+. ....+.+.++++.+..... ... -..+|||++||+.|||+|. .+|+++|| ||||+++|+.
T Consensus 414 ---~~n~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~-----~~~~ilil-DE~ts~LD~~ 483 (547)
T PRK10522 414 ---GPEGK-PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALA-----EERDILLL-DEWAADQDPH 483 (547)
T ss_pred ---ccccC-chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCCCCCHH
Confidence 11111 1122334455555433211 110 1479999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHH
Q 007747 545 DQLSKFNQKLAD 556 (591)
Q Consensus 545 ~q~~~f~~~L~~ 556 (591)
... .+.+.+..
T Consensus 484 ~~~-~i~~~l~~ 494 (547)
T PRK10522 484 FRR-EFYQVLLP 494 (547)
T ss_pred HHH-HHHHHHHH
Confidence 864 34355543
No 341
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.77 E-value=2.6e-18 Score=193.19 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=110.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l- 469 (591)
..+|+++++.+++|+ .++|+|+||+||||+++.|+|++.|.+|+|.+.+.|.- .+++++|...+.+--
T Consensus 345 ~~il~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti 422 (571)
T TIGR02203 345 RPALDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTI 422 (571)
T ss_pred CccccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccH
Confidence 458999999999999 99999999999999999999999999999999997752 389999987542211
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
|+.+... ...+. ....++++.++. .++|..+. .+|||++||++|||+|. .+|+++|| |
T Consensus 423 ~~Ni~~~~~-~~~~~-~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall-----~~~~illL-D 494 (571)
T TIGR02203 423 ANNIAYGRT-EQADR-AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL-----KDAPILIL-D 494 (571)
T ss_pred HHHHhcCCC-CCCCH-HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 2222211 01122 233444444332 23454443 47999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhh
Q 007747 536 EALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
|||++||...... +.+.|..+.
T Consensus 495 Epts~LD~~~~~~-i~~~L~~~~ 516 (571)
T TIGR02203 495 EATSALDNESERL-VQAALERLM 516 (571)
T ss_pred CccccCCHHHHHH-HHHHHHHHh
Confidence 9999999998754 446666654
No 342
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.77 E-value=1.1e-18 Score=198.68 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=128.9
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC---CcEEEEccccc------ceeeeecchhhhhhhc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDT------FRSGAVEQLRTHARRL 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~---~G~V~i~~~Dt------~RigaveQl~~~~~~l 469 (591)
...+|+++++.+++|+ +++|+|||||||||||+.|+|...+. .|+|.+.|.+. .++|+++|...+...+
T Consensus 37 ~~~iL~~vs~~i~~Ge--~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGE--LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 4569999999999999 99999999999999999999998774 69999999875 2489999987554433
Q ss_pred cc----cee--ecC-CC---CCHHHHHHHHHHHhhhcCC-Ccchh------ccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 470 QV----PIF--EKG-YE---KDPAIVAKEAIQEATRNGS-DVVLV------DTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 470 ~v----~l~--~~~-~~---~d~~~~a~~al~~~~~~~~-d~vli------DtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
.| .+. .+. .. ......+.+.++.+++.+. |..+. .+|||++||+.++++|. .+|++++
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~-----~~p~vll 189 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELL-----TDPPLLF 189 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHH-----cCCCEEE
Confidence 22 111 111 11 1122345666666655443 55544 48999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec-cccccCCcEEEE
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT-KFDTIDDKHYQW 584 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT-K~D~i~d~vGal 584 (591)
+ ||||+|||+..... +.+.|+.+...++++.++.|-.+ .+-..+|++..+
T Consensus 190 l-DEPtsgLD~~~~~~-l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 190 C-DEPTSGLDSFMAYS-VVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240 (617)
T ss_pred e-eCCCcchhHHHHHH-HHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEe
Confidence 9 99999999999755 44788888766555555555543 333345666443
No 343
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.77 E-value=2e-18 Score=199.37 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=110.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++++++++|+ .++|+|+|||||||+++.|+|++.|+.|+|.++|.|+. ++|+|+|...+
T Consensus 487 ~~iL~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI 564 (708)
T TIGR01193 487 SNILSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564 (708)
T ss_pred CcceeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHH
Confidence 468999999999999 99999999999999999999999999999999998862 49999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++ .+... ...+.. .+.++++.++. .++|..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 565 ~eNi--~l~~~-~~~~~~-~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall-----~~p~iliL 635 (708)
T TIGR01193 565 LENL--LLGAK-ENVSQD-EIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL-----TDSKVLIL 635 (708)
T ss_pred HHHH--hccCC-CCCCHH-HHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh-----hCCCEEEE
Confidence 3333 22211 112222 23444443322 2455544 348999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADL 557 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l 557 (591)
||||+++|+.... .+.+.|..+
T Consensus 636 -DE~Ts~LD~~te~-~i~~~L~~~ 657 (708)
T TIGR01193 636 -DESTSNLDTITEK-KIVNNLLNL 657 (708)
T ss_pred -eCccccCCHHHHH-HHHHHHHHh
Confidence 9999999998864 444566543
No 344
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.77 E-value=1.6e-18 Score=198.43 Aligned_cols=174 Identities=19% Similarity=0.171 Sum_probs=127.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~~~~ 466 (591)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|...+.
T Consensus 21 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~ 98 (648)
T PRK10535 21 VEVLKGISLDIYAGE--MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLL 98 (648)
T ss_pred eeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccC
Confidence 468999999999999 99999999999999999999999999999999998752 389999977543
Q ss_pred hhc------ccceeecC-CCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 RRL------QVPIFEKG-YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 ~~l------~v~l~~~~-~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
..+ .......+ ........+.++++.+++... +..+..+||||+|++.|+|+|+ .+|+++|| ||||
T Consensus 99 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~-----~~P~lLll-DEP~ 172 (648)
T PRK10535 99 SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM-----NGGQVILA-DEPT 172 (648)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCC
Confidence 322 11111111 111122334555555544332 5677889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
.|||+..+. .+.+.|..+.+.+.++.+.+|-..-.+. +|++..
T Consensus 173 ~gLD~~s~~-~l~~ll~~l~~~g~tilivsH~~~~~~~-~d~i~~ 215 (648)
T PRK10535 173 GALDSHSGE-EVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIE 215 (648)
T ss_pred CCCCHHHHH-HHHHHHHHHHhcCCEEEEECCCHHHHHh-CCEEEE
Confidence 999999974 5557788776554455555555554443 555543
No 345
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.76 E-value=2.3e-18 Score=199.07 Aligned_cols=135 Identities=21% Similarity=0.220 Sum_probs=105.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++||++++|+ .++|+||||+||||+++.|+|++.|++|+|.++|.|+. ++++|+|...+
T Consensus 494 ~~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTI 571 (711)
T TIGR00958 494 VPVLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV 571 (711)
T ss_pred CccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCH
Confidence 468999999999999 99999999999999999999999999999999998862 59999997644
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+|+... ... .+ .+.+.++++.+.. .++|..+. .+||||+||++|||+|. .+|+++||
T Consensus 572 reNI~~g--~~~--~~-~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl-----~~p~ILIL 641 (711)
T TIGR00958 572 RENIAYG--LTD--TP-DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV-----RKPRVLIL 641 (711)
T ss_pred HHHHhcC--CCC--CC-HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 3333221 111 11 2233444444332 23555443 48999999999999999 99999999
Q ss_pred EecccCCCCHHHHH
Q 007747 534 VGEALVGNDAVDQL 547 (591)
Q Consensus 534 VDEPt~GlD~~~q~ 547 (591)
||||+++|+....
T Consensus 642 -DEpTSaLD~~te~ 654 (711)
T TIGR00958 642 -DEATSALDAECEQ 654 (711)
T ss_pred -EccccccCHHHHH
Confidence 9999999997753
No 346
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.1e-18 Score=176.44 Aligned_cols=155 Identities=17% Similarity=0.109 Sum_probs=114.1
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------------ceeeeecchhhhhhhccc
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHARRLQV 471 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------------~RigaveQl~~~~~~l~v 471 (591)
+++|..+... +++|.|++|+||||+|++|+|+++|+.|.|.++|.-. .|+|||||...+..++.|
T Consensus 16 ~a~~~~p~~G--vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARG--ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCc--eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 4666665434 9999999999999999999999999999999987532 479999999887777644
Q ss_pred ceeecCCCCCH--HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 472 PIFEKGYEKDP--AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 472 ~l~~~~~~~d~--~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
.- ...|+... .....+++..++.... +.++..+|||++||++|.|||. ..|+++|| |||++.||.....+
T Consensus 94 rg-NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALL-----t~P~LLLm-DEPLaSLD~~RK~E 166 (352)
T COG4148 94 RG-NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALL-----TAPELLLM-DEPLASLDLPRKRE 166 (352)
T ss_pred ec-chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHh-----cCCCeeee-cCchhhcccchhhH
Confidence 31 01122221 1223445555555554 7889999999999999999999 99999999 99999999877654
Q ss_pred HHHHHHHHhhcCCCCccceEEEec
Q 007747 549 KFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
.+ -.|..+.++ ..|-++.+|
T Consensus 167 il-pylERL~~e---~~IPIlYVS 186 (352)
T COG4148 167 IL-PYLERLRDE---INIPILYVS 186 (352)
T ss_pred HH-HHHHHHHHh---cCCCEEEEe
Confidence 33 455555544 344444444
No 347
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=2.7e-18 Score=171.44 Aligned_cols=185 Identities=19% Similarity=0.139 Sum_probs=137.7
Q ss_pred HHHHHHHHcCC---CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc--c--eeee
Q 007747 386 MEEALVRILTP---RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--F--RSGA 458 (591)
Q Consensus 386 l~~~L~~il~~---~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt--~--Riga 458 (591)
+...+.+.+.+ .....+|+||||++.+|+ .++|||+|||||||||+.|||.++|+.|+|.+.|.=. + -+|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf 100 (249)
T COG1134 23 LKKRLKGLAKGGRKVAEFWALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGF 100 (249)
T ss_pred HHHHHHHHhcCCCCcceEEEecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCC
Confidence 34444455433 345789999999999999 9999999999999999999999999999999987543 2 3445
Q ss_pred ecchhhhhhhcccceeecCC---CCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 459 VEQLRTHARRLQVPIFEKGY---EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 459 veQl~~~~~~l~v~l~~~~~---~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
-+++--. + |+.+....+ ..+....+.+.++++++.++ |..+-..|-||+-|++++-+.. .+||++|+
T Consensus 101 ~pelTGr-e--Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~-----~~pdILll- 171 (249)
T COG1134 101 DPELTGR-E--NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATH-----VEPDILLL- 171 (249)
T ss_pred CcccchH-H--HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhh-----cCCCEEEE-
Confidence 4444322 2 222222222 23344667788888888777 7888888999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vG 582 (591)
||.++--|+.-+..-. +.+.++.....++.+-+|-+..+-.+||+.-
T Consensus 172 DEvlavGD~~F~~K~~-~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i 218 (249)
T COG1134 172 DEVLAVGDAAFQEKCL-ERLNELVEKNKTIVLVSHDLGAIKQYCDRAI 218 (249)
T ss_pred ehhhhcCCHHHHHHHH-HHHHHHHHcCCEEEEEECCHHHHHHhcCeeE
Confidence 9999999998774443 6666775555666666666666777777654
No 348
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.76 E-value=2.2e-18 Score=194.32 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=109.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~----- 465 (591)
..+|+++++++++|+ .++|+|||||||||+++.|+|++.|+.|+|.+.+.++ .++++++|...+
T Consensus 328 ~~~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti 405 (569)
T PRK10789 328 HPALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTV 405 (569)
T ss_pred CccccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccH
Confidence 458999999999999 9999999999999999999999999999999998875 248999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcc----hhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~v----liDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++ .+.... .... ....+++.+.. .+++.. ...+|||++||+.|||+|. .+|+++||
T Consensus 406 ~~Ni--~~~~~~--~~~~-~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall-----~~~~illl 475 (569)
T PRK10789 406 ANNI--ALGRPD--ATQQ-EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL-----LNAEILIL 475 (569)
T ss_pred HHHH--hcCCCC--CCHH-HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 3333 221111 1222 22333333221 233332 3468999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||++||+..... +.+.|..+.
T Consensus 476 -DEpts~LD~~~~~~-i~~~l~~~~ 498 (569)
T PRK10789 476 -DDALSAVDGRTEHQ-ILHNLRQWG 498 (569)
T ss_pred -ECccccCCHHHHHH-HHHHHHHHh
Confidence 99999999998654 446666654
No 349
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=3.8e-18 Score=196.63 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=118.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++||.+++|+ .++|+|+||+||||+++.|+|++.|++|+|.++|.|+. ++|+|+|...+
T Consensus 470 ~~il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti 547 (694)
T TIGR01846 470 PEVLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSI 547 (694)
T ss_pred ccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhH
Confidence 458999999999999 99999999999999999999999999999999998862 48999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++. +... ..+. +...++++.+.. .+++..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 548 ~eNi~--~~~~--~~~~-~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall-----~~~~ilil 617 (694)
T TIGR01846 548 RDNIA--LCNP--GAPF-EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV-----GNPRILIF 617 (694)
T ss_pred HHHHh--cCCC--CCCH-HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 33332 2111 1122 223334433321 2345443 458999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
||||+++|+.... .+.+.|..+.. ++++.+.+|-.+-+.. +|++
T Consensus 618 -DEpts~LD~~~~~-~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i 661 (694)
T TIGR01846 618 -DEATSALDYESEA-LIMRNMREICR-GRTVIIIAHRLSTVRA-CDRI 661 (694)
T ss_pred -ECCCcCCCHHHHH-HHHHHHHHHhC-CCEEEEEeCChHHHHh-CCEE
Confidence 9999999999864 44466666642 2333333333333333 4554
No 350
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.76 E-value=3.9e-18 Score=192.99 Aligned_cols=170 Identities=19% Similarity=0.174 Sum_probs=119.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l- 469 (591)
..+|++++|++++|+ .++|+||||+||||+++.|+|++.|+.|+|.+.|.|.. .+++++|...+...-
T Consensus 348 ~~~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti 425 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSI 425 (585)
T ss_pred CccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccH
Confidence 358999999999999 99999999999999999999999999999999988752 489999976432210
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhh-------h-cCCCc----chhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEAT-------R-NGSDV----VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~-------~-~~~d~----vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
++.+.... ....+ ..++++.+. + .+++. ....+|||++||+.|||+|. .+|+++|| |
T Consensus 426 ~~Ni~~~~~~--~~~~~-~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall-----~~p~ilil-D 496 (585)
T TIGR01192 426 RENIRLGREG--ATDEE-VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL-----KNAPILVL-D 496 (585)
T ss_pred HHHHhcCCCC--CCHHH-HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-E
Confidence 22221111 11221 222222211 1 23332 23458999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
|||++||+... ..+.+.|..+.. ++++.+.+|-++-+.. +|++-.
T Consensus 497 Epts~LD~~~~-~~i~~~l~~~~~-~~tvI~isH~~~~~~~-~d~i~~ 541 (585)
T TIGR01192 497 EATSALDVETE-ARVKNAIDALRK-NRTTFIIAHRLSTVRN-ADLVLF 541 (585)
T ss_pred CCccCCCHHHH-HHHHHHHHHHhC-CCEEEEEEcChHHHHc-CCEEEE
Confidence 99999999886 445577766643 3444444454444544 555543
No 351
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.75 E-value=5.3e-18 Score=191.01 Aligned_cols=145 Identities=21% Similarity=0.232 Sum_probs=109.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++++|++++|+ .++|+|+||+||||+++.|+|++.|..|+|.+.+.++. .+++++|...+
T Consensus 353 ~~iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti 430 (576)
T TIGR02204 353 QPALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASV 430 (576)
T ss_pred CccccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccH
Confidence 458999999999999 99999999999999999999999999999999997751 48999998743
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+|+.. ... ..+. +.+.++++.++. .+++..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 431 ~~Ni~~--~~~--~~~~-~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~-----~~~~ilil 500 (576)
T TIGR02204 431 MENIRY--GRP--DATD-EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL-----KDAPILLL 500 (576)
T ss_pred HHHHhc--CCC--CCCH-HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH-----hCCCeEEE
Confidence 444322 111 1122 233344443321 1334333 348999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||+++|+.... .+.+.|..+.
T Consensus 501 -DEpts~lD~~~~~-~i~~~l~~~~ 523 (576)
T TIGR02204 501 -DEATSALDAESEQ-LVQQALETLM 523 (576)
T ss_pred -eCcccccCHHHHH-HHHHHHHHHh
Confidence 9999999999864 4546666664
No 352
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.2e-18 Score=185.15 Aligned_cols=148 Identities=22% Similarity=0.224 Sum_probs=115.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhhhc--
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL-- 469 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~~l-- 469 (591)
.++++++|++++|+ .++|||++||||||+++.|+|++.|+.|+|.++|.+. ..+++|.|.+.+...-
T Consensus 335 ~~l~~l~~t~~~g~--~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir 412 (559)
T COG4988 335 PALSDLNLTIKAGQ--LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412 (559)
T ss_pred cccCCceeEecCCc--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHH
Confidence 78999999999999 9999999999999999999999999999999998876 2389999987543211
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHhhh-------cCCCcchhc----cchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 470 -QVPIFEKGYEKDPAIVAKEAIQEATR-------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 470 -~v~l~~~~~~~d~~~~a~~al~~~~~-------~~~d~vliD----tSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
|+.++.. ... .+.+.++++.+.+ .+.|.++-+ +|||+.||+.+||+|. .+++++|| |||
T Consensus 413 eNi~l~~~--~~s-~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll-----~~~~l~ll-DEp 483 (559)
T COG4988 413 ENILLARP--DAS-DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL-----SPASLLLL-DEP 483 (559)
T ss_pred HHhhccCC--cCC-HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc-----CCCCEEEe-cCC
Confidence 3333221 112 2334445554433 255777877 8999999999999999 89999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcC
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
|++||+.+.. ...+.|.++.+.
T Consensus 484 TA~LD~etE~-~i~~~l~~l~~~ 505 (559)
T COG4988 484 TAHLDAETEQ-IILQALQELAKQ 505 (559)
T ss_pred ccCCCHhHHH-HHHHHHHHHHhC
Confidence 9999998864 444667777654
No 353
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.75 E-value=5.7e-18 Score=190.75 Aligned_cols=148 Identities=22% Similarity=0.254 Sum_probs=112.0
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhhhc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~~l 469 (591)
...+|+++||.+++|+ .++||||+||||||+++.|++++.|+.|+|.++|.|+ .++|+|+|...+..--
T Consensus 341 ~~~vl~~is~~i~~Ge--~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~T 418 (567)
T COG1132 341 KKPVLKDISFSIEPGE--KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGT 418 (567)
T ss_pred CCccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeeccc
Confidence 4578999999999999 9999999999999999999999999999999999887 2499999977443211
Q ss_pred ---ccceeecCCCCCHHHHHHHHHHHhh------h--cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 470 ---QVPIFEKGYEKDPAIVAKEAIQEAT------R--NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 470 ---~v~l~~~~~~~d~~~~a~~al~~~~------~--~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
|+.+... + ... +.+.+|++.+. . .++|..+. .+|||++||++|||+|. .+|++++|
T Consensus 419 I~~NI~~g~~-~-at~-eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall-----~~~~ILIL- 489 (567)
T COG1132 419 IRENIALGRP-D-ATD-EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL-----RNPPILIL- 489 (567)
T ss_pred HHHHHhcCCC-C-CCH-HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 2332211 1 112 22233333321 1 25676664 68999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhh
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||+++|+.... ...+.+..+.
T Consensus 490 DEaTSalD~~tE~-~I~~~l~~l~ 512 (567)
T COG1132 490 DEATSALDTETEA-LIQDALKKLL 512 (567)
T ss_pred eccccccCHHhHH-HHHHHHHHHh
Confidence 9999999999864 4446666555
No 354
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7.2e-18 Score=183.20 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=115.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------e--eeeecchhhhhhhc-
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------R--SGAVEQLRTHARRL- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------R--igaveQl~~~~~~l- 469 (591)
..+|+++||++++|+ -++|+|+|||||||+|+.|-+++. .+|+|+|+|.|+. | ||+|+|...+.+.-
T Consensus 365 ~~iL~gvsf~I~kGe--kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTI 441 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGE--KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTI 441 (591)
T ss_pred CceecceeEEecCCC--EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhH
Confidence 348999999999999 999999999999999999999998 8999999999983 3 99999987554332
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHhhhc--------CCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 --QVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 --~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
|+.+ ...+ ....+ +.++.+.++.. +|+..+ .-+|||++|++.+||++. .+|++++| |
T Consensus 442 l~NI~Y-Gn~s-as~ee-V~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l-----Kda~Il~~-D 512 (591)
T KOG0057|consen 442 LYNIKY-GNPS-ASDEE-VVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL-----KDAPILLL-D 512 (591)
T ss_pred HHHhhc-CCCC-cCHHH-HHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh-----cCCCeEEe-c
Confidence 2221 1111 12222 23333333322 233222 347999999999999999 89999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
|||+.||.......+ +.+.+ ...++++..-.|-++-++.
T Consensus 513 EaTS~LD~~TE~~i~-~~i~~-~~~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 513 EATSALDSETEREIL-DMIMD-VMSGRTVIMIVHRLDLLKD 551 (591)
T ss_pred CcccccchhhHHHHH-HHHHH-hcCCCeEEEEEecchhHhc
Confidence 999999999876555 33433 2233444444444444444
No 355
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.74 E-value=5e-18 Score=208.00 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=123.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh---cCCcEEEEccccc-----ceeeeecchhhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDT-----FRSGAVEQLRTHA----- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~---~~~G~V~i~~~Dt-----~RigaveQl~~~~----- 466 (591)
..+|++|++.+.+|+ +++|+|||||||||||+.|+|++. ++.|+|.+.|.++ .++|+++|...+.
T Consensus 776 ~~iL~~vs~~i~~Ge--~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 776 RVILNNVDGWVKPGT--LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred cEeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCH
Confidence 468999999999999 999999999999999999999987 6789999999875 2489999975432
Q ss_pred -hhcccceeecC-CCCCH---HHHHHHHHHHhhhcCC-Ccchh----ccchhHHHHHHHHHHHHhchhcCCCc-EEEEEe
Q 007747 467 -RRLQVPIFEKG-YEKDP---AIVAKEAIQEATRNGS-DVVLV----DTAGRMQDNEPLMRALSKLIYLNNPD-LVLFVG 535 (591)
Q Consensus 467 -~~l~v~l~~~~-~~~d~---~~~a~~al~~~~~~~~-d~vli----DtSGg~~qr~~LaraL~kl~~~~~Pd-lILLVD 535 (591)
+++......+. ..... ...+.++++.+++.+. |..+. .+||||+||+.|+++|+ .+|+ ++|| |
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~-----~~P~~iLlL-D 927 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV-----AKPKLLLFL-D 927 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH-----cCCCeEEEE-c
Confidence 22222111111 11111 2345667777666544 55544 69999999999999999 9998 6666 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
|||+|||+.... .+.+.|++++..++++.+++|-.+
T Consensus 928 EPTsgLD~~~~~-~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 928 EPTSGLDSQTAW-SICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHHHcCCEEEEEecCCC
Confidence 999999999874 455888888776666666666554
No 356
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.74 E-value=9.1e-18 Score=206.22 Aligned_cols=175 Identities=15% Similarity=0.249 Sum_probs=121.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc-cccc-------c--eeeeecchhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-ACDT-------F--RSGAVEQLRTH---- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~-~~Dt-------~--RigaveQl~~~---- 465 (591)
..+|++++|.+++|+ +++|+|||||||||++++|+|++.|+.|+|.+. +.|+ . ++|+|+|...+
T Consensus 398 ~~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~T 475 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGK--TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNS 475 (1466)
T ss_pred CceeccceEEEcCCC--EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhcc
Confidence 469999999999999 999999999999999999999999999999994 4554 1 38999997543
Q ss_pred -hhhcccceeec-C-------C--------------------------------------------CCCHHHHHHHHHHH
Q 007747 466 -ARRLQVPIFEK-G-------Y--------------------------------------------EKDPAIVAKEAIQE 492 (591)
Q Consensus 466 -~~~l~v~l~~~-~-------~--------------------------------------------~~d~~~~a~~al~~ 492 (591)
.+++.+..+.. . + .....+.+.++++.
T Consensus 476 I~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~ 555 (1466)
T PTZ00265 476 IKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKK 555 (1466)
T ss_pred HHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHH
Confidence 33332221100 0 0 00011234444444
Q ss_pred hhhc--------CCC----cchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc-
Q 007747 493 ATRN--------GSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS- 559 (591)
Q Consensus 493 ~~~~--------~~d----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~- 559 (591)
+... +++ .....+||||+||+.|||+|. .+|+++|| ||||++||+.... .+.+.|..+..
T Consensus 556 ~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll-----~~P~ILlL-DEpTSaLD~~se~-~i~~~L~~~~~~ 628 (1466)
T PTZ00265 556 VLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII-----RNPKILIL-DEATSSLDNKSEY-LVQKTINNLKGN 628 (1466)
T ss_pred hCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eCcccccCHHHHH-HHHHHHHHHhhc
Confidence 4322 222 334679999999999999999 99999999 9999999998864 45577777754
Q ss_pred CCCCccceEEEeccccccCCcEEEE
Q 007747 560 SPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 560 ~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.++++.+..|-++-+. .+|++-.+
T Consensus 629 ~g~TvIiIsHrls~i~-~aD~Iivl 652 (1466)
T PTZ00265 629 ENRITIIIAHRLSTIR-YANTIFVL 652 (1466)
T ss_pred CCCEEEEEeCCHHHHH-hCCEEEEE
Confidence 3344444444444443 35655443
No 357
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.73 E-value=1.1e-17 Score=205.50 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=112.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc--------------------------------------
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-------------------------------------- 441 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-------------------------------------- 441 (591)
..+|+++||++++|+ .++||||+||||||+++.|+|++.|
T Consensus 1181 ~~vL~~lsl~i~~G~--~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKK--TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEF 1258 (1466)
T ss_pred CccccCeeEEEcCCC--EEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccc
Confidence 358999999999999 9999999999999999999999998
Q ss_pred ----------------CCcEEEEcccccc---------eeeeecchhhh-----hhhcccceeecCCCCCHHHHHHHHHH
Q 007747 442 ----------------HKVSVMMAACDTF---------RSGAVEQLRTH-----ARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (591)
Q Consensus 442 ----------------~~G~V~i~~~Dt~---------RigaveQl~~~-----~~~l~v~l~~~~~~~d~~~~a~~al~ 491 (591)
+.|+|.|+|.|+. ++|+|+|...+ .+|+ .+... .... +.+.+|++
T Consensus 1259 ~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI--~~g~~--~at~-eeI~~A~k 1333 (1466)
T PTZ00265 1259 SLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENI--KFGKE--DATR-EDVKRACK 1333 (1466)
T ss_pred ccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHH--hcCCC--CCCH-HHHHHHHH
Confidence 5899999999872 39999998754 3333 22211 1122 23444554
Q ss_pred Hhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhh
Q 007747 492 EATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 492 ~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
.+.. .++|..+- .+||||+||++|||||. .+|+++|| ||||++||+... ..+.+.|..+.
T Consensus 1334 ~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALl-----r~p~ILLL-DEaTSaLD~~sE-~~I~~~L~~~~ 1405 (1466)
T PTZ00265 1334 FAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL-----REPKILLL-DEATSSLDSNSE-KLIEKTIVDIK 1405 (1466)
T ss_pred HcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eCcccccCHHHH-HHHHHHHHHHh
Confidence 4432 34565553 48999999999999999 99999999 999999999885 45557776664
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2e-17 Score=157.39 Aligned_cols=169 Identities=24% Similarity=0.270 Sum_probs=121.2
Q ss_pred HHHHHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc-----ccc---------
Q 007747 389 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC-----DTF--------- 454 (591)
Q Consensus 389 ~L~~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~-----Dt~--------- 454 (591)
.|++.+.+.. -.++|+|.+.+|+ +.+|||.+|+||||+|++|++.+.|+.|.|.+... |.|
T Consensus 11 ~lsk~Yg~~~---gc~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 11 GLSKLYGPGK---GCRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred hhhhhhCCCc---CccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 4667776543 4679999999999 99999999999999999999999999999998763 333
Q ss_pred ----eeeeecchhhhhhhcccc--------ee---ecCCCCCHHHHHHHHHHHhhh--cCCCcchhccchhHHHHHHHHH
Q 007747 455 ----RSGAVEQLRTHARRLQVP--------IF---EKGYEKDPAIVAKEAIQEATR--NGSDVVLVDTAGRMQDNEPLMR 517 (591)
Q Consensus 455 ----RigaveQl~~~~~~l~v~--------l~---~~~~~~d~~~~a~~al~~~~~--~~~d~vliDtSGg~~qr~~Lar 517 (591)
..|+|.|.+.-.-++.+. +. .+.|+. ....+.+.++..+. ...|-.+...||||+||+.|||
T Consensus 86 L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~-iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 86 LLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGN-IRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred HhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhh-HHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence 178888876543333221 11 112221 11222333333322 2234556667999999999999
Q ss_pred HHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 518 ALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 518 aL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
-|. ..|.++++ ||||-|||..-|++.+ ..++.+.. ..++..+|+|.
T Consensus 165 nLV-----t~PrLvfM-DEPTGGLDVSVQARLL-DllrgLv~---~l~la~viVTH 210 (258)
T COG4107 165 NLV-----TRPRLVFM-DEPTGGLDVSVQARLL-DLLRGLVR---ELGLAVVIVTH 210 (258)
T ss_pred Hhc-----cCCceEEe-cCCCCCcchhhHHHHH-HHHHHHHH---hcCceEEEEec
Confidence 999 99999999 9999999999887654 55555543 35778888875
No 359
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.73 E-value=2.5e-18 Score=202.60 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=143.2
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhhhc--
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL-- 469 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~~l-- 469 (591)
+++++++.+++|+ ++++.|||||||||++++|.|...|++|++.+.|.|.- .+||.+|.-.+-+.+
T Consensus 580 Av~~ls~~V~~ge--cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGE--CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCc--eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 8899999999999 99999999999999999999999999999999888773 299999976554443
Q ss_pred --ccceeecCCC---CCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 --QVPIFEKGYE---KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 --~v~l~~~~~~---~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
.+.+|.+..+ .+....+...++.+++..+ +...--+|||+++++.++.+|. .+|.+|+| |||++|+||
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali-----g~p~vi~L-DEPstGmDP 731 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI-----GDPSVILL-DEPSTGLDP 731 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh-----cCCCEEEe-cCCCCCCCH
Confidence 2334443222 3445556666776666655 5666777999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
..+...+ .++..+.+.++.+.+|+|-++.++-+|++.|.
T Consensus 732 ~arr~lW-~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aI 770 (885)
T KOG0059|consen 732 KARRHLW-DIIARLRKNGKAIILTSHSMEEAEALCTRTAI 770 (885)
T ss_pred HHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHHhhhhhe
Confidence 9986555 88888888777888999999999999999876
No 360
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=1.1e-17 Score=189.82 Aligned_cols=163 Identities=20% Similarity=0.211 Sum_probs=129.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc---CCcEEEEccccc------ceeeeecchhhhhhhc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ---HKVSVMMAACDT------FRSGAVEQLRTHARRL 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~---~~G~V~i~~~Dt------~RigaveQl~~~~~~l 469 (591)
...+|++|+....+|+ ++||+||+||||||||++|||.... .+|+|+++|... ..+|+|.|.-.+...+
T Consensus 42 ~k~iL~~vsg~~~~Ge--l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE--LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred cceeeeCcEEEEecCe--EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccc
Confidence 4679999999999999 9999999999999999999998864 689999999332 2499999987665555
Q ss_pred ccc----eee--cC----CCCCHHHHHHHHHHHhhhcCC-Ccchh-----ccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 470 QVP----IFE--KG----YEKDPAIVAKEAIQEATRNGS-DVVLV-----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 470 ~v~----l~~--~~----~~~d~~~~a~~al~~~~~~~~-d~vli-----DtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.|. +.. +. .......++.+.++.+++... |.++- -.|||+++|+.+|.+|. ++|.++++
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell-----~~P~iLfl 194 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL-----TDPSILFL 194 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH-----cCCCEEEe
Confidence 332 111 11 112234667788888877766 44443 38999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (591)
||||+|||........ +.|+.++..++++.++.|-
T Consensus 195 -DEPTSGLDS~sA~~vv-~~Lk~lA~~grtVi~tIHQ 229 (613)
T KOG0061|consen 195 -DEPTSGLDSFSALQVV-QLLKRLARSGRTVICTIHQ 229 (613)
T ss_pred -cCCCCCcchhhHHHHH-HHHHHHHhCCCEEEEEEeC
Confidence 9999999999876555 8999999988877777664
No 361
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.73 E-value=1.6e-17 Score=190.45 Aligned_cols=170 Identities=8% Similarity=-0.020 Sum_probs=114.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh-----hhhccccee
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 474 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~-----~~~l~v~l~ 474 (591)
..+|++++|++++|+ +++|+|||||||||+++.|+|++++.+|+|.+.+ ..++++++|...+ .+++..+..
T Consensus 465 ~~il~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 465 DVLIESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred CeeeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 368999999999999 9999999999999999999999999999998754 2368999997633 333322211
Q ss_pred ecC--CCCCHHHHHHHHHHHhhhcCC-Cc---------chhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 475 EKG--YEKDPAIVAKEAIQEATRNGS-DV---------VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 475 ~~~--~~~d~~~~a~~al~~~~~~~~-d~---------vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
... ........+.++++.+++..+ +. ....+||||+||+.|||+|. .+|+++|| ||||++||
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~-----~~p~illL-DEpts~LD 614 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFY-----HKPQFAIL-DECTSAVS 614 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccCCC
Confidence 000 011112234455555544321 11 12468999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+..... +.+.+.. .+.++.+.+|-++-.. .+|++..+
T Consensus 615 ~~~~~~-l~~~l~~---~~~tvI~isH~~~~~~-~~d~il~l 651 (659)
T TIGR00954 615 VDVEGY-MYRLCRE---FGITLFSVSHRKSLWK-YHEYLLYM 651 (659)
T ss_pred HHHHHH-HHHHHHH---cCCEEEEEeCchHHHH-hCCEEEEE
Confidence 988643 3344433 2333333334333333 35555443
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.73 E-value=1.1e-17 Score=204.84 Aligned_cols=175 Identities=17% Similarity=0.183 Sum_probs=126.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc--CCcEEEEccccc----c--eeeeecchhhhhhhc--
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDT----F--RSGAVEQLRTHARRL-- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~--~~G~V~i~~~Dt----~--RigaveQl~~~~~~l-- 469 (591)
..+|++|++.+.+|+ +++|+|||||||||||+.|+|...+ ..|+|.+.|.+. + ++|+++|...+...+
T Consensus 893 ~~iL~~vs~~i~~Ge--l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 893 LQLLREVTGAFRPGV--LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred ceEeeCcEEEEECCe--EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 468999999999999 9999999999999999999998763 579999998664 2 379999975443332
Q ss_pred ----ccceeecCC-CCCH---HHHHHHHHHHhhhcCC-Ccch-----hccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 470 ----QVPIFEKGY-EKDP---AIVAKEAIQEATRNGS-DVVL-----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 470 ----~v~l~~~~~-~~d~---~~~a~~al~~~~~~~~-d~vl-----iDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
......+.. ..+. ...+.+.++.+++.++ +..+ ..+||||+||+.|+++|+ .+|+++|| |
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~-----~~P~lL~L-D 1044 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELV-----ANPSIIFM-D 1044 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHh-----hCCCEEEE-e
Confidence 221111111 1111 2345666776666543 4433 479999999999999999 99999988 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc-ccccCCcEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKHYQ 583 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~D~i~d~vGa 583 (591)
|||+|||+..+. .+.+.|+.+...+.++.+++|-.+- +-..+|++-.
T Consensus 1045 EPTsgLD~~~a~-~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140 1045 EPTSGLDARAAA-IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1092 (1470)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEE
Confidence 999999999875 4558888888776666666665542 2234555433
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.72 E-value=2.5e-17 Score=183.37 Aligned_cols=170 Identities=21% Similarity=0.145 Sum_probs=115.3
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccc-----
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP----- 472 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~----- 472 (591)
....+++++++.+.+|+ .|+|||+||+||||||++|+|.+.|+.|.|.+... .|+|++.|.........+-
T Consensus 14 g~~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~~l~Q~~~~~~~~tv~~~v~~ 89 (530)
T COG0488 14 GDRPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVGYLSQEPPLDPEKTVLDYVIE 89 (530)
T ss_pred CCceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEEEeCCCCCcCCCccHHHHHHh
Confidence 45678999999999999 99999999999999999999999999999988653 6899999976543321000
Q ss_pred ----e----------ee------------------cCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHH
Q 007747 473 ----I----------FE------------------KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALS 520 (591)
Q Consensus 473 ----l----------~~------------------~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~ 520 (591)
+ +. ...+-+....+..++.-++....+..+-++|||++.|+.||++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~ 169 (530)
T COG0488 90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169 (530)
T ss_pred hhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHh
Confidence 0 00 000000112222333333332235778899999999999999999
Q ss_pred hchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC-CccceEEEeccccccCCcEE
Q 007747 521 KLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 521 kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK~D~i~d~vG 582 (591)
.+||++|| ||||+.||.... .- |..+..... ++.+-+|--.-+|.+|+++-
T Consensus 170 -----~~pDlLLL-DEPTNHLD~~~i-~W----Le~~L~~~~gtviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 170 -----EEPDLLLL-DEPTNHLDLESI-EW----LEDYLKRYPGTVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred -----cCCCEEEE-cCCCcccCHHHH-HH----HHHHHHhCCCcEEEEeCCHHHHHHHhhheE
Confidence 99999999 999999998774 22 333332221 23333333334666666543
No 364
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.72 E-value=2.4e-17 Score=177.66 Aligned_cols=162 Identities=22% Similarity=0.225 Sum_probs=124.2
Q ss_pred cCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhh
Q 007747 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT 464 (591)
Q Consensus 394 l~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~ 464 (591)
..|.....+|++|+|.+.+|+ .++||||+|||||||.+.|.|..+|..|.|.+++.|.+ .+||.+|.-.
T Consensus 343 ~PPg~~~pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe 420 (580)
T COG4618 343 APPGQKKPILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE 420 (580)
T ss_pred cCCCCCCcceecceeEecCCc--eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce
Confidence 346677889999999999999 99999999999999999999999999999999999984 4999999653
Q ss_pred -----hhhhcccceeecCCCCCHHHHHHHHHHHhh--------hcCCCcchhc----cchhHHHHHHHHHHHHhchhcCC
Q 007747 465 -----HARRLQVPIFEKGYEKDPAIVAKEAIQEAT--------RNGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNN 527 (591)
Q Consensus 465 -----~~~~l~v~l~~~~~~~d~~~~a~~al~~~~--------~~~~d~vliD----tSGg~~qr~~LaraL~kl~~~~~ 527 (591)
.++| |.-|. ...|+..++..| ..++ -.+||..+-+ +||||+||+.|||+|- .+
T Consensus 421 LF~GTIaeN--IaRf~--~~~d~~kIieAA-~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY-----G~ 490 (580)
T COG4618 421 LFDGTIAEN--IARFG--EEADPEKVIEAA-RLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY-----GD 490 (580)
T ss_pred ecCCcHHHH--HHhcc--ccCCHHHHHHHH-HHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc-----CC
Confidence 3443 32221 123444333322 2211 2467877765 6999999999999999 99
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 528 PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
|.+++| |||-++||.... ..+..++..++.. +.+.|++|.
T Consensus 491 P~lvVL-DEPNsNLD~~GE-~AL~~Ai~~~k~r----G~~vvviaH 530 (580)
T COG4618 491 PFLVVL-DEPNSNLDSEGE-AALAAAILAAKAR----GGTVVVIAH 530 (580)
T ss_pred CcEEEe-cCCCCCcchhHH-HHHHHHHHHHHHc----CCEEEEEec
Confidence 999999 999999999875 3444666666554 666676664
No 365
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=2.8e-17 Score=192.83 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=118.9
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARR 468 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~ 468 (591)
+.+.||++++++++.|+ .++||||+||||||.+..|-++|.|..|.|.|+|.|+. .+|.|.|.+++...
T Consensus 1001 P~~~Il~~l~l~i~~Gq--TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~ 1078 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQ--TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG 1078 (1228)
T ss_pred CCchhhcCCcEEecCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc
Confidence 34678999999999999 99999999999999999999999999999999999983 39999998876443
Q ss_pred c---ccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 469 L---QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 469 l---~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
- |+.+ . .... ....+.+|.+.++. ++||..+ ..+||||+||.++||||. .+|.++||
T Consensus 1079 TIrENI~Y-G-~~~v-s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil-----RnPkILLL 1150 (1228)
T KOG0055|consen 1079 TIRENIAY-G-SEEV-SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL-----RNPKILLL 1150 (1228)
T ss_pred cHHHHHhc-c-CCCC-CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH-----cCCCeeee
Confidence 2 2322 1 1111 22334455555543 3566555 468999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
||+|++||..+. +..+++|......
T Consensus 1151 -DEATSALDseSE-rvVQeALd~a~~g 1175 (1228)
T KOG0055|consen 1151 -DEATSALDSESE-RVVQEALDRAMEG 1175 (1228)
T ss_pred -eccchhhhhhhH-HHHHHHHHHhhcC
Confidence 999999999884 6677888766553
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.72 E-value=2.8e-17 Score=201.46 Aligned_cols=178 Identities=15% Similarity=0.125 Sum_probs=126.4
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh----hcCCcEEEEccccc------ce--eeeecchhhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL----LQHKVSVMMAACDT------FR--SGAVEQLRTH 465 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l----~~~~G~V~i~~~Dt------~R--igaveQl~~~ 465 (591)
....+|+++++.+++|+ +++|+|||||||||||+.|+|.+ .|..|+|.+.|.+. +| +++++|...+
T Consensus 72 ~~~~iL~~vs~~i~~Ge--~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGE--LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH 149 (1394)
T ss_pred CcceeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc
Confidence 34679999999999999 99999999999999999999986 46899999998764 33 8999997644
Q ss_pred hhhc------ccceeecCC-----CCCHHH----HHHHHHHHhhhcCC-Ccc-----hhccchhHHHHHHHHHHHHhchh
Q 007747 466 ARRL------QVPIFEKGY-----EKDPAI----VAKEAIQEATRNGS-DVV-----LVDTAGRMQDNEPLMRALSKLIY 524 (591)
Q Consensus 466 ~~~l------~v~l~~~~~-----~~d~~~----~a~~al~~~~~~~~-d~v-----liDtSGg~~qr~~LaraL~kl~~ 524 (591)
...+ ......+.. +....+ ++..+++.+++.+. +.. +..+||||+||+.|+++|+
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~---- 225 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL---- 225 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHH----
Confidence 4333 221111100 111211 22345666665543 333 4569999999999999999
Q ss_pred cCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEe-ccccccCCcEEEE
Q 007747 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILL-TKFDTIDDKHYQW 584 (591)
Q Consensus 525 ~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIl-TK~D~i~d~vGal 584 (591)
.+|+++++ ||||+|||+..+.. +.+.|+.+... +.++.++.|-. ..+..++|++-.|
T Consensus 226 -~~p~vlll-DEPTsgLD~~~~~~-i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L 284 (1394)
T TIGR00956 226 -GGAKIQCW-DNATRGLDSATALE-FIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVL 284 (1394)
T ss_pred -hCCCEEEE-eCCCCCcCHHHHHH-HHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Confidence 99999999 99999999999754 45888888754 45555555543 3344456666543
No 367
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=5.5e-17 Score=151.23 Aligned_cols=160 Identities=20% Similarity=0.222 Sum_probs=123.0
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC---CcEEEEccccc-------ceeeeecchhhhhhhcc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDT-------FRSGAVEQLRTHARRLQ 470 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~---~G~V~i~~~Dt-------~RigaveQl~~~~~~l~ 470 (591)
-+|-+|||++.+|+ |+.|.||+||||||++.-+.|.+.+. .|++.+.+.+. ..+|..+|..-+...++
T Consensus 16 cLLa~~n~Tia~Ge--ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 16 CLLANVNFTIAKGE--IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred eEEEeeeEEecCCc--EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 46778999999999 99999999999999999999999764 69999998876 34999999887666664
Q ss_pred cc---eee---cCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 471 VP---IFE---KGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 471 v~---l~~---~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
|. ++. ...+......+..|++...+.++ +.-+-.+|||++-|++|+|+|. .+|..+|| |||++.||.
T Consensus 94 Vg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Ll-----a~Pk~lLL-DEPFS~LD~ 167 (213)
T COG4136 94 VGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALL-----AQPKALLL-DEPFSRLDV 167 (213)
T ss_pred cccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHH-----hCcceeee-CCchhHHHH
Confidence 32 111 12223333556777887777665 6778888999999999999999 99999999 999999998
Q ss_pred HHHHHHHHH-HHHHhhcCCCCccceEEEecc
Q 007747 544 VDQLSKFNQ-KLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 544 ~~q~~~f~~-~L~~l~~~~~~~~it~IIlTK 573 (591)
.-+ ..|.+ .+.++. ..+|-.+.+|.
T Consensus 168 ALR-~qfR~wVFs~~r----~agiPtv~VTH 193 (213)
T COG4136 168 ALR-DQFRQWVFSEVR----AAGIPTVQVTH 193 (213)
T ss_pred HHH-HHHHHHHHHHHH----hcCCCeEEEec
Confidence 764 33433 233333 34677777775
No 368
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=1.7e-17 Score=191.30 Aligned_cols=173 Identities=20% Similarity=0.174 Sum_probs=112.7
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh---hcCCcEEEEcccccc----------------e----
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL---LQHKVSVMMAACDTF----------------R---- 455 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l---~~~~G~V~i~~~Dt~----------------R---- 455 (591)
...+|++++|++.+|+ +++|||||||||||||++|+|.. .|.+|+|.+...+.. +
T Consensus 189 ~~~ll~~isl~i~~Ge--~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~ 266 (718)
T PLN03073 189 GRDLIVDASVTLAFGR--HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLL 266 (718)
T ss_pred CCEEEECCEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHH
Confidence 3459999999999999 99999999999999999999864 578899986554321 0
Q ss_pred ---eeeecchhhhhh-----hcccceeecCCCCC--------------------HHHHHHHHHHHhhhcC--CCcchhcc
Q 007747 456 ---SGAVEQLRTHAR-----RLQVPIFEKGYEKD--------------------PAIVAKEAIQEATRNG--SDVVLVDT 505 (591)
Q Consensus 456 ---igaveQl~~~~~-----~l~v~l~~~~~~~d--------------------~~~~a~~al~~~~~~~--~d~vliDt 505 (591)
+++++|...... +...+.. .+...+ ....+..++..+++.. .+..+.++
T Consensus 267 ~~~~~~~~q~~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~L 345 (718)
T PLN03073 267 EEEAQLVAQQRELEFETETGKGKGANK-DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTF 345 (718)
T ss_pred HHHHHHHHHHHHhhhcccccccccccc-cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhC
Confidence 233333221100 0000000 010111 1112222333333211 24567889
Q ss_pred chhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 506 AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 506 SGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+++|+.|+++|. .+|+++|| ||||++||+.... .+.+.|..+ +.++.+.+|-..-++.+||++..|
T Consensus 346 SgG~k~rv~LA~aL~-----~~p~lLlL-DEPt~~LD~~~~~-~l~~~L~~~---~~tviivsHd~~~l~~~~d~i~~l 414 (718)
T PLN03073 346 SGGWRMRIALARALF-----IEPDLLLL-DEPTNHLDLHAVL-WLETYLLKW---PKTFIVVSHAREFLNTVVTDILHL 414 (718)
T ss_pred CHHHHHHHHHHHHHh-----cCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEE
Confidence 999999999999999 99999999 9999999999864 343555544 344555556666677777776554
No 369
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.71 E-value=6.2e-17 Score=154.83 Aligned_cols=162 Identities=43% Similarity=0.645 Sum_probs=129.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~ 495 (591)
|+++|+|++|+||||++..++..+...+.+|.+..+|++|.+...|+..+++.++++++......++.....+.+..+..
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999998887788999999999999999999999888899887766666776666666665555
Q ss_pred cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 496 ~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
.+++++++|++|..+....++..|..+.....|+.++||-+|.++.+...+...|.+. ..++++|+||+|
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~----------~~~~~viltk~D 150 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEA----------LGITGVILTKLD 150 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhh----------CCCCEEEEECCc
Confidence 6789999999999887778888887777767799988888898776665443322111 247999999999
Q ss_pred ccCCcEEE-EEecc
Q 007747 576 TIDDKHYQ-WSMCR 588 (591)
Q Consensus 576 ~i~d~vGa-ls~~~ 588 (591)
+. .+.|. ++++.
T Consensus 151 ~~-~~~g~~~~~~~ 163 (173)
T cd03115 151 GD-ARGGAALSIRA 163 (173)
T ss_pred CC-CCcchhhhhHH
Confidence 95 56676 87654
No 370
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=6.8e-17 Score=154.87 Aligned_cols=162 Identities=20% Similarity=0.199 Sum_probs=122.2
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------c---eeeeecchhh-----
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------F---RSGAVEQLRT----- 464 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------~---RigaveQl~~----- 464 (591)
.+.+++.|||++..|+ .++|||.||||||||.++|+|++.|++|+|++++... | +|-.++|.+.
T Consensus 25 ~~~AV~~vSFtL~~~Q--TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCc--EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 3567788999999999 9999999999999999999999999999999998765 2 5889999763
Q ss_pred ---hhhhcccceeecCCCCCHH---HHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 465 ---HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 465 ---~~~~l~v~l~~~~~~~d~~---~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
.+..+..|+... ..-++. ..+.+.+...++.. ....+.-+|-|++||++|||||. .+|.+||. ||
T Consensus 103 Rl~iGqiLd~PL~l~-T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI-----L~P~iIIa-De 175 (267)
T COG4167 103 RLRIGQILDFPLRLN-TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI-----LRPKIIIA-DE 175 (267)
T ss_pred hhhhhhHhcchhhhc-ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh-----cCCcEEEe-hh
Confidence 244444454322 223333 34445555555432 24778888999999999999999 99999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
++.+||..-+.+..| .+-++.+ ..+|+-|.++-
T Consensus 176 Al~~LD~smrsQl~N-L~LeLQe---k~GiSyiYV~Q 208 (267)
T COG4167 176 ALASLDMSMRSQLIN-LMLELQE---KQGISYIYVTQ 208 (267)
T ss_pred hhhhccHHHHHHHHH-HHHHHHH---HhCceEEEEec
Confidence 999999987765553 3334443 35777777664
No 371
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.70 E-value=6.8e-17 Score=199.84 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=113.1
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhh---
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARR--- 468 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~--- 468 (591)
.+|++|||++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+. ++++|+|.+.+..-
T Consensus 1300 ~vL~~is~~I~~Ge--kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1300 LVLRHINVTIHGGE--KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence 58999999999999 99999999999999999999999999999999999972 59999998754221
Q ss_pred cccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEEEec
Q 007747 469 LQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (591)
Q Consensus 469 l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE 536 (591)
-|+..+. ...+ +.+.+|++.+++ .++|..+. .+||||+|+++|||+|. .+|+++|| ||
T Consensus 1378 ~NLdp~~---~~sd-eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALL-----r~~~ILiL-DE 1447 (1522)
T TIGR00957 1378 MNLDPFS---QYSD-EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALL-----RKTKILVL-DE 1447 (1522)
T ss_pred HHcCccc---CCCH-HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHH-----cCCCEEEE-EC
Confidence 1232222 1122 233455555433 35666654 48999999999999999 89999999 99
Q ss_pred ccCCCCHHHHHHHHHHHHHHhh
Q 007747 537 ALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 537 Pt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||+++|.... ..+.+.|+...
T Consensus 1448 aTSalD~~Te-~~Iq~~l~~~~ 1468 (1522)
T TIGR00957 1448 ATAAVDLETD-NLIQSTIRTQF 1468 (1522)
T ss_pred CcccCCHHHH-HHHHHHHHHHc
Confidence 9999999875 45556666543
No 372
>PLN03232 ABC transporter C family member; Provisional
Probab=99.70 E-value=6e-17 Score=200.08 Aligned_cols=143 Identities=20% Similarity=0.195 Sum_probs=111.7
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----h
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~-----~ 466 (591)
.+|+|+||++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+. ++++|+|.+.+ .
T Consensus 1250 ~vL~~isl~I~~Ge--kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232 1250 PVLHGLSFFVSPSE--KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence 58999999999999 99999999999999999999999999999999999972 58999998744 3
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 467 ~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
+|+ ..+. . .++. .+.+|++.+++ .++|..+ ..+||||+|+++|||+|. .+|+++||
T Consensus 1328 ~NL--~~~~-~--~sde-ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL-----r~~~ILIL- 1395 (1495)
T PLN03232 1328 FNI--DPFS-E--HNDA-DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL-----RRSKILVL- 1395 (1495)
T ss_pred HHc--CCCC-C--CCHH-HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH-----hCCCEEEE-
Confidence 333 2221 1 1222 33455554432 2445444 358999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhh
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||+++|.... ..+.+.|+...
T Consensus 1396 DEATSaLD~~Te-~~Iq~~L~~~~ 1418 (1495)
T PLN03232 1396 DEATASVDVRTD-SLIQRTIREEF 1418 (1495)
T ss_pred ECCcccCCHHHH-HHHHHHHHHHc
Confidence 999999999875 45556666553
No 373
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6e-17 Score=175.94 Aligned_cols=170 Identities=19% Similarity=0.166 Sum_probs=120.0
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhh--
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-- 464 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~-- 464 (591)
+..+..+|+++||++.+|+ -++|+|++||||||++..|+|.+.|+.|+|.+.|.++. .++.+.|-..
T Consensus 347 ~~~~~~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF 424 (573)
T COG4987 347 PGQQTKALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424 (573)
T ss_pred CCCccchhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHH
Confidence 5566679999999999999 99999999999999999999999999999999998873 2555666442
Q ss_pred ---hhhhcccceeecCCCCCHHHHHHHHHHHhhhcC--------CCcchh----ccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 465 ---HARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--------SDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 465 ---~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~--------~d~vli----DtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
+.+|+.+ .... ..+ +...++++.+++.+ ++..+- -+|||++||+.|+|+|. ++.+
T Consensus 425 ~~Tlr~NL~l---A~~~-AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL-----~dap 494 (573)
T COG4987 425 SGTLRDNLRL---ANPD-ASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL-----HDAP 494 (573)
T ss_pred HHHHHHHHhh---cCCC-CCH-HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH-----cCCC
Confidence 2333322 1111 112 23445555554432 223333 36999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
++|| ||||.|||+....+.+ +.+-...+ ++++.+-+|-++-++. +|++
T Consensus 495 l~lL-DEPTegLD~~TE~~vL-~ll~~~~~-~kTll~vTHrL~~le~-~drI 542 (573)
T COG4987 495 LWLL-DEPTEGLDPITERQVL-ALLFEHAE-GKTLLMVTHRLRGLER-MDRI 542 (573)
T ss_pred eEEe-cCCcccCChhhHHHHH-HHHHHHhc-CCeEEEEecccccHhh-cCEE
Confidence 9999 9999999999876444 22222222 3555555566666665 3443
No 374
>PLN03130 ABC transporter C family member; Provisional
Probab=99.70 E-value=7.7e-17 Score=199.77 Aligned_cols=143 Identities=18% Similarity=0.207 Sum_probs=112.8
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----h
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~-----~ 466 (591)
.+|+++||++++|+ .++|||++||||||+++.|++++.|+.|+|.|+|.|+. ++++|+|.+.+ .
T Consensus 1253 ~VL~~is~~I~~Ge--kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1253 PVLHGLSFEISPSE--KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred ceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence 58999999999999 99999999999999999999999999999999999972 59999998754 3
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 467 ~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
+|+ ..+. . .++ +.+.+|++.+.+ .++|..+. .+||||+|+++|||||. .+|+++||
T Consensus 1331 eNL--d~~~-~--~td-eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL-----r~p~ILIL- 1398 (1622)
T PLN03130 1331 FNL--DPFN-E--HND-ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL-----RRSKILVL- 1398 (1622)
T ss_pred HHh--CcCC-C--CCH-HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 333 2221 1 122 234455554432 24565543 58999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhh
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||+++|.... ..+.+.|+...
T Consensus 1399 DEATSaLD~~Te-~~Iq~~I~~~~ 1421 (1622)
T PLN03130 1399 DEATAAVDVRTD-ALIQKTIREEF 1421 (1622)
T ss_pred ECCCCCCCHHHH-HHHHHHHHHHC
Confidence 999999999886 45557776654
No 375
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.69 E-value=7.6e-17 Score=161.62 Aligned_cols=173 Identities=15% Similarity=0.087 Sum_probs=102.0
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHH-HHHHhhhhcCCcEEEEc---------------ccc---cc--e
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL-AKVAYWLLQHKVSVMMA---------------ACD---TF--R 455 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL-~kLAg~l~~~~G~V~i~---------------~~D---t~--R 455 (591)
.....+|+++||++++|+ +++|+||||||||||+ ..|.. .|++.+. ..+ .. .
T Consensus 5 ~~~~~~l~~vsl~i~~Ge--~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 5 GAREHNLKNVDVDIPRNK--LVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred cchhhccccceeecCCCc--EEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 345678999999999999 9999999999999996 44331 1111000 000 00 0
Q ss_pred eeeecchhhhh--hhccc-------ceeecCCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchh
Q 007747 456 SGAVEQLRTHA--RRLQV-------PIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIY 524 (591)
Q Consensus 456 igaveQl~~~~--~~l~v-------~l~~~~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~ 524 (591)
.+...|..... ....+ .++...+.........+.++.+.+.. .+..+..+||||+|++.|+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~---- 153 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIG---- 153 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHH----
Confidence 11111100000 00000 00000111111111234455555433 36778899999999999999999
Q ss_pred cCCCc--EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 525 LNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 525 ~~~Pd--lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.+|+ ++|| ||||+|+|+..+. .+.+.|..+...+.++.+.+|-+.-+. +||++..+
T Consensus 154 -~~p~~~llll-DEPt~gLD~~~~~-~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l 211 (226)
T cd03270 154 -SGLTGVLYVL-DEPSIGLHPRDND-RLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDI 211 (226)
T ss_pred -hCCCCCEEEE-eCCccCCCHHHHH-HHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEe
Confidence 8884 7777 9999999999874 455777777655555555555555554 56666544
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.69 E-value=8.2e-17 Score=158.34 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=108.1
Q ss_pred cccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCC---------cEEEEccccc------ceeeeecchhhhhhh
Q 007747 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK---------VSVMMAACDT------FRSGAVEQLRTHARR 468 (591)
Q Consensus 404 ~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~---------G~V~i~~~Dt------~RigaveQl~~~~~~ 468 (591)
+++++++.+| +++|+||||+||||++..|++++.+.. +.+.+.+.+. .++|+++|.....
T Consensus 14 ~~~~l~~~~g---~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 14 DKTTIPFPPG---LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred CCeeeecCCC---cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 3456666665 899999999999999999999886542 3466666653 4689999976543
Q ss_pred cccceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 469 LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 469 l~v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
+ +. . ....+.++++. ....+..+.++||||+|++.++++|+.. ...+|+++|| |||++|+|+..+..
T Consensus 89 ~--~~---~----~~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~-~~~~~~illl-DEP~~~LD~~~~~~ 155 (197)
T cd03278 89 Y--SI---I----SQGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIF-RVRPSPFCVL-DEVDAALDDANVER 155 (197)
T ss_pred e--eE---E----ehhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHh-ccCCCCEEEE-eCCcccCCHHHHHH
Confidence 1 11 0 12234455554 1223677889999999999999998611 0135578888 99999999998744
Q ss_pred HHHHHHHHhhcCCCCccceEEEeccccccCCcEEEEEe
Q 007747 549 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQWSM 586 (591)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGals~ 586 (591)
+.+.|..+.. ..++.+..|-..-++ .+|++..+.+
T Consensus 156 -l~~~l~~~~~-~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 156 -FARLLKEFSK-ETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred -HHHHHHHhcc-CCEEEEEECCHHHHh-hcceEEEEEe
Confidence 4467777654 234444455555454 4666665544
No 377
>PLN03140 ABC transporter G family member; Provisional
Probab=99.69 E-value=6.5e-17 Score=198.27 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=125.0
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC---CcEEEEccccc------ceeeeecchhhhhhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDT------FRSGAVEQLRTHARR 468 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~---~G~V~i~~~Dt------~RigaveQl~~~~~~ 468 (591)
....+|+++++.+++|+ +++|+|||||||||||+.|+|.+.++ .|+|.+.|.+. .++|+++|...+...
T Consensus 176 ~~~~IL~~vs~~i~~Ge--~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 176 TKLTILKDASGIIKPSR--MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred ccceeccCCeEEEeCCe--EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 35679999999999999 99999999999999999999999887 89999999765 248999997644333
Q ss_pred c------ccceeecCCC----------C---------CHH----------------HHHHHHHHHhhhcCC------Ccc
Q 007747 469 L------QVPIFEKGYE----------K---------DPA----------------IVAKEAIQEATRNGS------DVV 501 (591)
Q Consensus 469 l------~v~l~~~~~~----------~---------d~~----------------~~a~~al~~~~~~~~------d~v 501 (591)
+ .......+.+ . +.. ..+..+++.+++... +..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 3 2211111000 0 000 112345555555432 234
Q ss_pred hhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEe-ccccccCC
Q 007747 502 LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILL-TKFDTIDD 579 (591)
Q Consensus 502 liDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIl-TK~D~i~d 579 (591)
+..+||||+||+.++++|. .+|+++++ ||||+|||+....... +.|+.+... +.++.++.|-. ..+-.++|
T Consensus 334 ~rglSGGerkRVsia~aL~-----~~p~vlll-DEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD 406 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIV-----GPTKTLFM-DEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMSLLQPAPETFDLFD 406 (1470)
T ss_pred ccCCCcccceeeeehhhhc-----CCCcEEEE-eCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHHhh
Confidence 5679999999999999999 99999999 9999999999975544 788887653 34444444432 23333456
Q ss_pred cEEEE
Q 007747 580 KHYQW 584 (591)
Q Consensus 580 ~vGal 584 (591)
++-.|
T Consensus 407 ~vilL 411 (1470)
T PLN03140 407 DIILL 411 (1470)
T ss_pred eEEEe
Confidence 65544
No 378
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.69 E-value=1.8e-16 Score=167.05 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=121.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------------ceeeeecchhh---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLRT--- 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------------~RigaveQl~~--- 464 (591)
..++++|++++.+|+ .++|||.+||||||+=..|.+++.+. |.|.+.|.++ .|+-.|||.+.
T Consensus 300 ~~AVd~isl~L~~gq--TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTLRRGQ--TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEecCCC--eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 557899999999999 99999999999999999999998876 9999999987 24888999762
Q ss_pred -----hhhhcccceeecCCCCCHH---HHHHHHHHHhhhcCC--CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 465 -----HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 465 -----~~~~l~v~l~~~~~~~d~~---~~a~~al~~~~~~~~--d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
..+++.-.+.........+ ..+.+|++.+++... +.++...|||++||.+|||+|. .+|.+|+|
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli-----LkP~~i~L- 450 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI-----LKPELILL- 450 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh-----cCCcEEEe-
Confidence 2333322222222222333 445555655554332 4889999999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
||||+.||..-|.+.. +.|+++... ++++-+.++
T Consensus 451 DEPTSALD~SVQaQvv-~LLr~LQ~k---~~LsYLFIS 484 (534)
T COG4172 451 DEPTSALDRSVQAQVL-DLLRDLQQK---HGLSYLFIS 484 (534)
T ss_pred cCCchHhhHHHHHHHH-HHHHHHHHH---hCCeEEEEe
Confidence 9999999999887665 677777654 455555544
No 379
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.68 E-value=1.3e-16 Score=168.02 Aligned_cols=176 Identities=18% Similarity=0.200 Sum_probs=129.6
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-----CcEEEEccccc-------------ceee
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDT-------------FRSG 457 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-----~G~V~i~~~Dt-------------~Rig 457 (591)
....+.++++|+|.+..|+ .++|||.+|||||-+...|.+++... +|+|.+.|.|+ -||+
T Consensus 19 ~~~~~~aVk~isf~i~~GE--tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~ 96 (534)
T COG4172 19 EGGTVEAVKGISFDIEAGE--TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIG 96 (534)
T ss_pred CCcceEeeccceeeecCCC--EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceE
Confidence 4456789999999999999 99999999999999999999998652 68999999997 2699
Q ss_pred eecchhh--------hhhhcc--cceeecCCCCCHHHHHHHHHHHhhhcC----CCcchhccchhHHHHHHHHHHHHhch
Q 007747 458 AVEQLRT--------HARRLQ--VPIFEKGYEKDPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLI 523 (591)
Q Consensus 458 aveQl~~--------~~~~l~--v~l~~~~~~~d~~~~a~~al~~~~~~~----~d~vliDtSGg~~qr~~LaraL~kl~ 523 (591)
++||.+. ..+.+. +.++.......+...+.+.++..+... ++.++..+|||++||+.||+||+
T Consensus 97 MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa--- 173 (534)
T COG4172 97 MIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA--- 173 (534)
T ss_pred EEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc---
Confidence 9999762 222221 222222222333344445555544332 35788999999999999999999
Q ss_pred hcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec----cccccCCcEEE
Q 007747 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT----KFDTIDDKHYQ 583 (591)
Q Consensus 524 ~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT----K~D~i~d~vGa 583 (591)
++|+++|. ||||+.||..-|++.+ +.|+++..+ .++..+.+| -+-.++|+|..
T Consensus 174 --n~P~lLIA-DEPTTALDVtvQaQIL-~Ll~~Lq~~---~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 174 --NEPDLLIA-DEPTTALDVTVQAQIL-DLLKELQAE---LGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred --CCCCeEee-cCCcchhhhhhHHHHH-HHHHHHHHH---hCcEEEEEeccHHHHHHhhhhEEE
Confidence 99999999 9999999999998766 677777654 345544444 44455666544
No 380
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=1e-16 Score=157.16 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=123.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchh------
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLR------ 463 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~------ 463 (591)
...+|+++++++..|+ ++.++|-|||||||+++.|+|.+.|++|+|.|++.|+- +++-|+|.+
T Consensus 18 ek~~l~~~sL~I~~g~--FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 18 EKRALNGLSLEIAEGD--FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred HHHHHhcCceeecCCc--eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 4568899999999999 99999999999999999999999999999999999984 366788876
Q ss_pred --hhhhhcccce-ee--cCCCC--CH--HHHHHHHHHHhh--hcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 464 --THARRLQVPI-FE--KGYEK--DP--AIVAKEAIQEAT--RNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 464 --~~~~~l~v~l-~~--~~~~~--d~--~~~a~~al~~~~--~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
+..+++-+.. .. +++.. .. .....+-+..+. +++ .+..+-=+|||++|-+.|+++.. +.|+++
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl-----~~pkiL 170 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATL-----HPPKIL 170 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhc-----CCCcEE
Confidence 3344442221 11 11111 11 111112222221 111 23445557999999999999998 888888
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE-EEecc
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCR 588 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~ 588 (591)
|| ||-|++|||......++ .=..+. ....++.+++|.-=+-+=.+|. +-|.|
T Consensus 171 LL-DEHTAALDPkta~~vm~-lT~kiV---~~~klTtlMVTHnm~~Al~yG~RlImLh 223 (263)
T COG1101 171 LL-DEHTAALDPKTAEFVME-LTAKIV---EEHKLTTLMVTHNMEDALDYGNRLIMLH 223 (263)
T ss_pred Ee-cchhhcCCcchHHHHHH-HHHHHH---HhcCCceEEEeccHHHHHhhCCeEEEEe
Confidence 88 99999999987644332 222222 2357889999876555556676 66665
No 381
>PTZ00243 ABC transporter; Provisional
Probab=99.68 E-value=2e-16 Score=195.80 Aligned_cols=142 Identities=18% Similarity=0.134 Sum_probs=110.8
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----h
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~-----~ 466 (591)
.+|++|||++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+. ++|+|+|...+ .
T Consensus 1324 ~vL~~vsf~I~~Ge--kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1324 LVLRGVSFRIAPRE--KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred ceeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 48999999999999 99999999999999999999999999999999999972 49999998754 3
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCC-CcEEEE
Q 007747 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNN-PDLVLF 533 (591)
Q Consensus 467 ~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~-PdlILL 533 (591)
+|+ ..+. ..++ +.+.+|++.+++ .++|..+ ..+||||+|+++|||+|. .+ |+++||
T Consensus 1402 eNI--dp~~---~~sd-eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL-----~~~~~ILlL 1470 (1560)
T PTZ00243 1402 QNV--DPFL---EASS-AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALL-----KKGSGFILM 1470 (1560)
T ss_pred HHh--Cccc---CCCH-HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHh-----cCCCCEEEE
Confidence 333 2221 1122 234555555433 2455555 358999999999999999 75 889998
Q ss_pred EecccCCCCHHHHHHHHHHHHHHh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADL 557 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l 557 (591)
||||+++|+... ..+.+.|...
T Consensus 1471 -DEATSaLD~~te-~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1471 -DEATANIDPALD-RQIQATVMSA 1492 (1560)
T ss_pred -eCCCccCCHHHH-HHHHHHHHHH
Confidence 999999999886 3445666554
No 382
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.7e-16 Score=157.09 Aligned_cols=169 Identities=17% Similarity=0.138 Sum_probs=120.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh--hcCCcEEEEcccccc--------e--eeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF--------R--SGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--~~~~G~V~i~~~Dt~--------R--igaveQl~~~~~ 467 (591)
..||+++|++++.|+ +.+|.||||||||||...|+|.- ..+.|+|++.|.|+- | +...+|.+.-..
T Consensus 17 keILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~ 94 (251)
T COG0396 17 KEILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94 (251)
T ss_pred hhhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence 479999999999999 99999999999999999999964 678999999999982 3 345566553222
Q ss_pred hcccceee-----cCCC-----CCHHHHHHHHHHHhhhcC-C-C-cchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 468 RLQVPIFE-----KGYE-----KDPAIVAKEAIQEATRNG-S-D-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 468 ~l~v~l~~-----~~~~-----~d~~~~a~~al~~~~~~~-~-d-~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
-+.+..|. ...+ .+....+.++++.+.... + + .+-.-.|||+++|..|++.++ .+|+++||
T Consensus 95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~-----lePkl~IL- 168 (251)
T COG0396 95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL-----LEPKLAIL- 168 (251)
T ss_pred CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh-----cCCCEEEe-
Confidence 11111110 0011 122234444444443322 1 1 223456999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
|||-+|||..+ ++...+.+..+... +.+.+|+|..-.+.+.+
T Consensus 169 DE~DSGLDIda-lk~V~~~i~~lr~~----~~~~liITHy~rll~~i 210 (251)
T COG0396 169 DEPDSGLDIDA-LKIVAEGINALREE----GRGVLIITHYQRLLDYI 210 (251)
T ss_pred cCCCcCccHHH-HHHHHHHHHHHhcC----CCeEEEEecHHHHHhhc
Confidence 99999999876 45555777777665 66778899887776655
No 383
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.67 E-value=2e-16 Score=195.28 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=115.0
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh-----hhhcccceee
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 475 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~-----~~~l~v~l~~ 475 (591)
.+|++++|++++|+ +++|+|||||||||||+.|+|++.|..|+|.+.| ++||++|...+ .+++- + .
T Consensus 440 ~~l~~i~l~i~~G~--~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----~iayv~Q~~~l~~~Ti~eNI~--~-g 510 (1490)
T TIGR01271 440 PVLKNISFKLEKGQ--LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWIMPGTIKDNII--F-G 510 (1490)
T ss_pred cceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----EEEEEeCCCccCCccHHHHHH--h-c
Confidence 58999999999999 9999999999999999999999999999999987 69999997633 23222 1 1
Q ss_pred cCCCCCHHHHHHHH---HHHhhhc--CC----CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 476 KGYEKDPAIVAKEA---IQEATRN--GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 476 ~~~~~d~~~~a~~a---l~~~~~~--~~----d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
..+.......+.++ .+.+... +. ......+||||+||+.|||+|. .+|+++|| |||++++|+...
T Consensus 511 ~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~-----~~~~illL-Dep~saLD~~~~ 584 (1490)
T TIGR01271 511 LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVY-----KDADLYLL-DSPFTHLDVVTE 584 (1490)
T ss_pred cccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccCCHHHH
Confidence 11111111111111 1111111 11 1234689999999999999999 99999999 999999999998
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
...|+..+..+.. ++++.+.+|-+.-+.. +|++-.
T Consensus 585 ~~i~~~~l~~~~~-~~tvilvtH~~~~~~~-ad~ii~ 619 (1490)
T TIGR01271 585 KEIFESCLCKLMS-NKTRILVTSKLEHLKK-ADKILL 619 (1490)
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCChHHHHh-CCEEEE
Confidence 7777555555442 3444444444433433 555543
No 384
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1e-16 Score=152.16 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=112.3
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------------c--eeeee
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------------F--RSGAV 459 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------------~--Rigav 459 (591)
....+++++++|+++.|+ |++|-||+|+||||+|++|-+-|.|++|+|.+--.+- . -+|||
T Consensus 21 Gi~LpV~~~vslsV~aGE--CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyV 98 (235)
T COG4778 21 GVRLPVLRNVSLSVNAGE--CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYV 98 (235)
T ss_pred CEEeeeeeceeEEecCcc--EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHH
Confidence 344678999999999999 9999999999999999999999999999999854322 1 29999
Q ss_pred cchhhhhhhc------ccceeecCCCCCH-HHHHHHHHHHhhhcC-C-CcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 460 EQLRTHARRL------QVPIFEKGYEKDP-AIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 460 eQl~~~~~~l------~v~l~~~~~~~d~-~~~a~~al~~~~~~~-~-d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
.|.-....+. .-|+...+...+. ...+.+.+..++.-. . ...+...|||+|||+.|+|.++ .+-.+
T Consensus 99 SQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfi-----vd~pI 173 (235)
T COG4778 99 SQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFI-----VDYPI 173 (235)
T ss_pred HHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhh-----ccCce
Confidence 9954433322 2244444443332 234444444443321 1 3556667999999999999999 89999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
+|| ||||+.||+.++.... +.+..-+..
T Consensus 174 LLL-DEPTasLDa~Nr~vVv-eli~e~Ka~ 201 (235)
T COG4778 174 LLL-DEPTASLDATNRAVVV-ELIREAKAR 201 (235)
T ss_pred EEe-cCCcccccccchHHHH-HHHHHHHhc
Confidence 998 9999999999875443 555444443
No 385
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.66 E-value=7.4e-16 Score=190.32 Aligned_cols=143 Identities=20% Similarity=0.166 Sum_probs=110.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++|||++++|+ .++|||++||||||+++.|+|++. .+|+|.|+|.|+. ++++|+|.+.+
T Consensus 1232 ~~vL~~is~~I~~Ge--kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTI 1308 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQ--RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTF 1308 (1490)
T ss_pred cceeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCH
Confidence 458999999999999 999999999999999999999986 7899999999872 59999998754
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+|+ ..+. . .++ +.+.++++.+.+ .++|..+. .+|||++|+++|||+|. .+|+++||
T Consensus 1309 R~NL--dp~~-~--~td-eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL-----r~~~ILlL 1377 (1490)
T TIGR01271 1309 RKNL--DPYE-Q--WSD-EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL-----SKAKILLL 1377 (1490)
T ss_pred HHHh--Cccc-C--CCH-HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh-----CCCCEEEE
Confidence 3333 2221 1 122 334556655433 24555554 47999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||+++|.... ..+.+.|....
T Consensus 1378 -DEaTS~lD~~Te-~~I~~~L~~~~ 1400 (1490)
T TIGR01271 1378 -DEPSAHLDPVTL-QIIRKTLKQSF 1400 (1490)
T ss_pred -eCCcccCCHHHH-HHHHHHHHHHc
Confidence 999999999875 44446665543
No 386
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=8.3e-17 Score=155.75 Aligned_cols=153 Identities=17% Similarity=0.195 Sum_probs=118.1
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcc-cccc----------eeeeecchhhhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA-CDTF----------RSGAVEQLRTHA 466 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~-~Dt~----------RigaveQl~~~~ 466 (591)
....+|+++||.+.+|+ .-+||||||+||||++-.|+|..+|+.|+|++.+ .|+. -||--+|-++..
T Consensus 16 ~GF~Aln~ls~~v~~Ge--lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVf 93 (249)
T COG4674 16 GGFKALNDLSFSVDPGE--LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVF 93 (249)
T ss_pred cceeeeeeeEEEecCCe--EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeeh
Confidence 44668999999999999 9999999999999999999999999999999998 7762 177788877665
Q ss_pred hhcc------cc------eeec---CCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcE
Q 007747 467 RRLQ------VP------IFEK---GYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (591)
Q Consensus 467 ~~l~------v~------l~~~---~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~Pdl 530 (591)
+.+. +. ++.. ....++...+.+++...++... +..-.-+|.|++|++.|.+.|+ .+|++
T Consensus 94 e~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~-----Q~P~l 168 (249)
T COG4674 94 ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA-----QDPKL 168 (249)
T ss_pred hhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec-----cCCcE
Confidence 5542 11 1111 1223444567777777766544 5666678999999999999999 99999
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 531 VLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 531 ILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
+|+ |||++|+...+... --+.|+.++.
T Consensus 169 LLl-DEPvAGMTd~Et~~-taeLl~~la~ 195 (249)
T COG4674 169 LLL-DEPVAGMTDAETEK-TAELLKSLAG 195 (249)
T ss_pred EEe-cCccCCCcHHHHHH-HHHHHHHHhc
Confidence 999 99999998776543 3366666664
No 387
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.8e-16 Score=167.21 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=114.9
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l 469 (591)
..++|+||||++.+|+ +++||||+|+||||.++.|-.++..+.|.|.|+|.|+. .||.|+|..++.+.-
T Consensus 550 ~k~vl~disF~v~pGk--tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdT 627 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGK--TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDT 627 (790)
T ss_pred CCceeecceEEecCCc--EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecce
Confidence 4578999999999999 99999999999999999999999999999999999983 399999988765542
Q ss_pred ---ccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcc----hhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 470 ---QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 470 ---~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~v----liDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
++.+- +....+.+ +.+|.+.+.. +++... =..+|||++||+++||.+. ..|.+|||
T Consensus 628 I~yNIrya-k~~Asnee--vyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL-----K~P~iIlL- 698 (790)
T KOG0056|consen 628 ILYNIRYA-KPSASNEE--VYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL-----KAPSIILL- 698 (790)
T ss_pred eeeheeec-CCCCChHH--HHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh-----cCCcEEEE-
Confidence 34332 22112221 1111111111 233322 2457999999999999999 89999998
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPN 562 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (591)
||+|++||.... +.++.+|..+.....
T Consensus 699 DEATSALDT~tE-R~IQaaL~rlca~RT 725 (790)
T KOG0056|consen 699 DEATSALDTNTE-RAIQAALARLCANRT 725 (790)
T ss_pred cchhhhcCCccH-HHHHHHHHHHhcCCc
Confidence 999999998764 667788988877543
No 388
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.65 E-value=5.2e-16 Score=172.81 Aligned_cols=170 Identities=19% Similarity=0.193 Sum_probs=120.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhh-hccc-ceeecC
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR-RLQV-PIFEKG 477 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~-~l~v-~l~~~~ 477 (591)
..++++++|.+.+|+ .|+||||||+||||||+.|+|.+.|..|.|.+... -++||+.|...... ...+ .+....
T Consensus 335 ~~l~~~~s~~i~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--v~igyf~Q~~~~l~~~~t~~d~l~~~ 410 (530)
T COG0488 335 RLLLKDLSFRIDRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--VKIGYFDQHRDELDPDKTVLEELSEG 410 (530)
T ss_pred ceeecCceEEecCCC--EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--eEEEEEEehhhhcCccCcHHHHHHhh
Confidence 468999999999999 99999999999999999999999999999987653 68999999773321 1111 111122
Q ss_pred CCCCHHHHHHHHHHHhhhcCC--CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q 007747 478 YEKDPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 478 ~~~d~~~~a~~al~~~~~~~~--d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~ 555 (591)
+.......+...+..+...+- ...+-.+|||++.|+.||+.+. .+|.++|| ||||+.||.... ..+.++|.
T Consensus 411 ~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~-----~~pNvLiL-DEPTNhLDi~s~-~aLe~aL~ 483 (530)
T COG0488 411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL-----QPPNLLLL-DEPTNHLDIESL-EALEEALL 483 (530)
T ss_pred CccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhc-----cCCCEEEE-cCCCccCCHHHH-HHHHHHHH
Confidence 211113344555555544332 3677789999999999999999 89999999 999999999875 55666665
Q ss_pred HhhcCCCCccceEEEeccccccCCcEEE
Q 007747 556 DLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 556 ~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
++.- ++.+-+|--.-+|.+++++..
T Consensus 484 ~f~G---tvl~VSHDr~Fl~~va~~i~~ 508 (530)
T COG0488 484 DFEG---TVLLVSHDRYFLDRVATRIWL 508 (530)
T ss_pred hCCC---eEEEEeCCHHHHHhhcceEEE
Confidence 5532 233333444445666655544
No 389
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.64 E-value=1.1e-15 Score=158.38 Aligned_cols=150 Identities=34% Similarity=0.474 Sum_probs=114.4
Q ss_pred chHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccC
Q 007747 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR 413 (591)
Q Consensus 334 dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~G 413 (591)
...+.+.++++.|++.||+++++++|++.+... .+ ...+...+.+.|.+.+..... ...+ ...
T Consensus 131 ~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~---------~~-~~~~~~~~~~~l~~~l~~~~~-----~~~~-~~~- 193 (282)
T TIGR03499 131 QRDPEGAKLLERLLRAGVSPELARELLEKLPER---------AD-AEDAWRWLREALEKMLPVKPE-----EDEI-LEQ- 193 (282)
T ss_pred ccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhcc---------CC-HHHHHHHHHHHHHHHhccCCc-----cccc-cCC-
Confidence 466789999999999999999999999998742 11 234556677888887752111 1111 123
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhhhcC-C-cEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l~~~-~-G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~ 491 (591)
+++++|+||+|||||||+.+||.++... + .+|.++.+|+||+|+++|+..+++.++++++... ++.. ..+++.
T Consensus 194 -~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~---~~~~-l~~~l~ 268 (282)
T TIGR03499 194 -GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR---DPKE-LRKALD 268 (282)
T ss_pred -CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC---CHHH-HHHHHH
Confidence 4499999999999999999999988765 4 6999999999999999999999999999986432 3333 345555
Q ss_pred HhhhcCCCcchhccch
Q 007747 492 EATRNGSDVVLVDTAG 507 (591)
Q Consensus 492 ~~~~~~~d~vliDtSG 507 (591)
.+ .++|++++||+|
T Consensus 269 ~~--~~~d~vliDt~G 282 (282)
T TIGR03499 269 RL--RDKDLILIDTAG 282 (282)
T ss_pred Hc--cCCCEEEEeCCC
Confidence 43 458999999987
No 390
>PTZ00243 ABC transporter; Provisional
Probab=99.64 E-value=8.5e-16 Score=190.21 Aligned_cols=139 Identities=23% Similarity=0.222 Sum_probs=102.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhc---ccceeec
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL---QVPIFEK 476 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l---~v~l~~~ 476 (591)
..+|++++|++++|+ +++|+|||||||||||+.|+|.+.|+.|+|.+. .++|+++|...+...- ++.+..
T Consensus 673 ~~iL~~isl~i~~G~--~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----~~i~yv~Q~~~l~~~Tv~enI~~~~- 745 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGK--LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----RSIAYVPQQAWIMNATVRGNILFFD- 745 (1560)
T ss_pred ceeEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----CeEEEEeCCCccCCCcHHHHHHcCC-
Confidence 458999999999999 999999999999999999999999999999874 4699999975432110 222211
Q ss_pred CCCCCHHHHHHHHHHHh------hhc--CC----CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 477 GYEKDPAIVAKEAIQEA------TRN--GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 477 ~~~~d~~~~a~~al~~~------~~~--~~----d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
..+. ....++++.+ ... +. +.....+||||+||+.|||+|. .+|+++|| ||||++||+.
T Consensus 746 --~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~-----~~p~illL-DEP~saLD~~ 816 (1560)
T PTZ00243 746 --EEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVY-----ANRDVYLL-DDPLSALDAH 816 (1560)
T ss_pred --hhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-cCccccCCHH
Confidence 1111 1112222211 110 12 3456789999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHH
Q 007747 545 DQLSKFNQKL 554 (591)
Q Consensus 545 ~q~~~f~~~L 554 (591)
.....++..+
T Consensus 817 ~~~~i~~~~~ 826 (1560)
T PTZ00243 817 VGERVVEECF 826 (1560)
T ss_pred HHHHHHHHHH
Confidence 8766665544
No 391
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.63 E-value=7.5e-16 Score=190.68 Aligned_cols=136 Identities=21% Similarity=0.211 Sum_probs=102.8
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh-----hhhcccceee
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 475 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~-----~~~l~v~l~~ 475 (591)
.+|++++|++++|+ +++|+|||||||||+++.|+|++.|..|+|.+.+ ++|+++|...+ .+++ .+ .
T Consensus 652 ~~l~~isl~i~~G~--~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~i~yv~Q~~~l~~~Ti~eNI--~~-g 722 (1522)
T TIGR00957 652 PTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQAWIQNDSLRENI--LF-G 722 (1522)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----EEEEEcCCccccCCcHHHHh--hc-C
Confidence 48999999999999 9999999999999999999999999999999986 69999997543 2222 22 1
Q ss_pred cCCCCCHHHHHHHHHHH------hhhc--CC----CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 476 KGYEKDPAIVAKEAIQE------ATRN--GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~------~~~~--~~----d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
..+ ++. ...++++. +... +. ......+||||+||+.|||+|. .+|+++|| ||||+++|+
T Consensus 723 ~~~--~~~-~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~-----~~~~illL-DEp~saLD~ 793 (1522)
T TIGR00957 723 KAL--NEK-YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY-----SNADIYLF-DDPLSAVDA 793 (1522)
T ss_pred Ccc--CHH-HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccccCH
Confidence 111 221 11222221 1111 11 2345679999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHH
Q 007747 544 VDQLSKFNQKL 554 (591)
Q Consensus 544 ~~q~~~f~~~L 554 (591)
......|+..+
T Consensus 794 ~~~~~i~~~l~ 804 (1522)
T TIGR00957 794 HVGKHIFEHVI 804 (1522)
T ss_pred HHHHHHHHHHh
Confidence 98876664443
No 392
>PLN03130 ABC transporter C family member; Provisional
Probab=99.63 E-value=2e-15 Score=187.27 Aligned_cols=139 Identities=20% Similarity=0.246 Sum_probs=106.5
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCC-cEEEEcccccceeeeecchhhh-----hhhccccee
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 474 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~-G~V~i~~~Dt~RigaveQl~~~-----~~~l~v~l~ 474 (591)
.+|+++|+.+++|+ .++|+||+||||||+++.|+|.+.|.. |+|.+.+ ++++|+|.+.+ .+| +-+.
T Consensus 631 ~vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~----~Iayv~Q~p~LfngTIreN--I~fg 702 (1622)
T PLN03130 631 PTLSNINLDVPVGS--LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG----TVAYVPQVSWIFNATVRDN--ILFG 702 (1622)
T ss_pred ceeeceeEEecCCC--EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC----eEEEEcCccccCCCCHHHH--HhCC
Confidence 47999999999999 999999999999999999999999998 8998643 69999998744 333 3221
Q ss_pred ecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 475 EKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
..+ + .+...++++.+.+ .+.+..+ +.+||||+||++|||||. .+|+++|| ||||+++|
T Consensus 703 -~~~--d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly-----~~~~IlLL-DEptSALD 772 (1622)
T PLN03130 703 -SPF--D-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVY-----SNSDVYIF-DDPLSALD 772 (1622)
T ss_pred -Ccc--c-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHh-----CCCCEEEE-CCCccccC
Confidence 112 2 2333444443322 1233333 358999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHh
Q 007747 543 AVDQLSKFNQKLADL 557 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l 557 (591)
+......|++.+..+
T Consensus 773 ~~~~~~I~~~~l~~~ 787 (1622)
T PLN03130 773 AHVGRQVFDKCIKDE 787 (1622)
T ss_pred HHHHHHHHHHHhhHH
Confidence 987766777777554
No 393
>PLN03232 ABC transporter C family member; Provisional
Probab=99.61 E-value=3.6e-15 Score=184.47 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=104.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh-----hhhccccee
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 474 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~-----~~~l~v~l~ 474 (591)
..+|+++||++++|+ .++|+||+||||||+++.|+|.+.|..|.+... .-++++|+|...+ .+|+ -+.
T Consensus 630 ~~vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~---~~~Iayv~Q~p~Lf~gTIreNI--~fg 702 (1495)
T PLN03232 630 KPTLSDINLEIPVGS--LVAIVGGTGEGKTSLISAMLGELSHAETSSVVI---RGSVAYVPQVSWIFNATVRENI--LFG 702 (1495)
T ss_pred CceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEe---cCcEEEEcCccccccccHHHHh--hcC
Confidence 357999999999999 999999999999999999999999988765321 1259999998643 3333 221
Q ss_pred ecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 475 EKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
..+ ++ +...++++.+.+ .+++..+ +.+||||+||++|||||. .+|+++|| ||||+++|
T Consensus 703 -~~~--~~-e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly-----~~~~IlLL-DEptSaLD 772 (1495)
T PLN03232 703 -SDF--ES-ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY-----SNSDIYIF-DDPLSALD 772 (1495)
T ss_pred -Ccc--CH-HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccccC
Confidence 112 22 233444443322 1233333 358999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHh
Q 007747 543 AVDQLSKFNQKLADL 557 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l 557 (591)
+......|++.+..+
T Consensus 773 ~~t~~~I~~~~l~~~ 787 (1495)
T PLN03232 773 AHVAHQVFDSCMKDE 787 (1495)
T ss_pred HHHHHHHHHHHhhhh
Confidence 988776776666543
No 394
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=9.6e-16 Score=180.11 Aligned_cols=171 Identities=20% Similarity=0.228 Sum_probs=131.8
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc--CCcEEEEccccc----c--eeeeecchhhhhhhc
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDT----F--RSGAVEQLRTHARRL 469 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~--~~G~V~i~~~Dt----~--RigaveQl~~~~~~l 469 (591)
....+|++|+--+.+|. .++|+|++||||||||+.||+...- ..|.|+|.|... | ++|||+|...|...+
T Consensus 802 ~~~qLL~~V~G~~kPG~--LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGV--LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred cceEhhhcCceEecCCc--eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCccc
Confidence 34568899999999999 9999999999999999999987532 368999998643 4 599999988776655
Q ss_pred ccc----e--eec-CC--CCCHH-HHHHHHHHHhhhcCC-Ccchhc----cchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 470 QVP----I--FEK-GY--EKDPA-IVAKEAIQEATRNGS-DVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 470 ~v~----l--~~~-~~--~~d~~-~~a~~al~~~~~~~~-d~vliD----tSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
.|. + +.+ .. ..... +.+++.++.+++..+ |.++.+ +|..||+|+.|+-+|+ .+|+.|||+
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv-----A~P~~ilFL 954 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV-----ANPSSILFL 954 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe-----cCCceeEEe
Confidence 432 1 111 11 11122 557778888888776 566666 7899999999999999 999888888
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEE-----Eeccccc
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI-----LLTKFDT 576 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I-----IlTK~D~ 576 (591)
||||+|||+....... +.|+.++..++++..|+| |+.-||+
T Consensus 955 DEPTSGLDsqaA~~i~-~~lrkla~tGqtIlCTIHQPS~~ife~FD~ 1000 (1391)
T KOG0065|consen 955 DEPTSGLDSQAAAIVM-RFLRKLADTGQTILCTIHQPSIDIFEAFDE 1000 (1391)
T ss_pred cCCCCCccHHHHHHHH-HHHHHHHhcCCeEEEEecCCcHHHHHHHhH
Confidence 9999999999876655 899999999988877765 4445554
No 395
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.4e-15 Score=155.30 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=113.2
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------e-eeeecchhhhhh
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------R-SGAVEQLRTHAR 467 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------R-igaveQl~~~~~ 467 (591)
.....+|.+++|.++.|+ .+++||++|+||||+++.|-.++.++.|.|.+++.|+. | ||.|+|...+..
T Consensus 273 ~~~r~iL~~isf~i~~g~--tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN 350 (497)
T COG5265 273 DPRRPILNGISFTIPLGK--TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350 (497)
T ss_pred cccchhhcCccccccCcc--EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh
Confidence 345678999999999999 99999999999999999999999999999999999983 2 999999765533
Q ss_pred hcccceeecCCCCCH--HHHHHHHHHHhhh--------cCCCcc----hhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 468 RLQVPIFEKGYEKDP--AIVAKEAIQEATR--------NGSDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 468 ~l~v~l~~~~~~~d~--~~~a~~al~~~~~--------~~~d~v----liDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.. -+|...|+... .+.+..+.+.+.. .+++.. -.-+|||++||+++||.+. .+|.+++|
T Consensus 351 Dt--i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~il-----k~p~il~~ 423 (497)
T COG5265 351 DT--IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTIL-----KNPPILIL 423 (497)
T ss_pred hh--HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHh-----cCCCEEEE
Confidence 21 01111122111 1122223332222 233322 2347999999999999999 89999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCC
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~ 561 (591)
||+|+.||.... +.++..|.+++...
T Consensus 424 -deatsaldt~te-~~iq~~l~~~~~~r 449 (497)
T COG5265 424 -DEATSALDTHTE-QAIQAALREVSAGR 449 (497)
T ss_pred -ehhhhHhhhhHH-HHHHHHHHHHhCCC
Confidence 999999998764 55667888777543
No 396
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.55 E-value=1.4e-14 Score=147.29 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=98.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcC-CcEEEEccc-c-----------cceeeeecchhh---------hhhhcccc
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAAC-D-----------TFRSGAVEQLRT---------HARRLQVP 472 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~-~G~V~i~~~-D-----------t~RigaveQl~~---------~~~~l~v~ 472 (591)
|.+++|||||||||||++..|++++.+. .+++.+.+. | ..++++++|... ....+.+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 3489999999999999999999999875 456666443 2 136788888631 11111111
Q ss_pred --eee----cC--CC-CCHHHHHHHHHHHhhhc--C-------------------CCcchhccchhHHHHHHHHHHHHhc
Q 007747 473 --IFE----KG--YE-KDPAIVAKEAIQEATRN--G-------------------SDVVLVDTAGRMQDNEPLMRALSKL 522 (591)
Q Consensus 473 --l~~----~~--~~-~d~~~~a~~al~~~~~~--~-------------------~d~vliDtSGg~~qr~~LaraL~kl 522 (591)
+.. .. .+ ......+.++++.+.+. + .+..+.++|||++|++.++++|+.+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 100 00 01 11234555566665542 1 1256778999999999999998721
Q ss_pred hhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 523 IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 523 ~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
. ..+|+++|+ ||||+++|+..+.. +.+.|..+.. +.+.|++|.-+++
T Consensus 185 ~-~~~~~illl-DEPt~~ld~~~~~~-~~~~l~~~~~-----g~~ii~iSH~~~~ 231 (251)
T cd03273 185 L-FKPAPMYIL-DEVDAALDLSHTQN-IGRMIKTHFK-----GSQFIVVSLKEGM 231 (251)
T ss_pred h-ccCCCEEEE-eCCCcCCCHHHHHH-HHHHHHHHcC-----CCEEEEEECCHHH
Confidence 1 125688888 99999999998754 4466666532 3456666665544
No 397
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.54 E-value=1.5e-14 Score=145.61 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=55.6
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccC
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~ 578 (591)
+..+..+||||+|++.|+++|+.. ...+|+++|| ||||+|+|+..+. .+.+.|..+.. ...+.++.|. ..+-.++
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~-~~~~~~illl-DEp~~~ld~~~~~-~~~~~l~~~~~-~~~ii~~~h~-~~~~~~~ 227 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQ-KCDPAPFYLF-DEIDAALDAQYRT-AVANMIKELSD-GAQFITTTFR-PELLEVA 227 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHh-ccCCCCEEEE-ECCccCCCHHHHH-HHHHHHHHHhC-CCEEEEEecC-HHHHhhC
Confidence 345677999999999999999610 0025788888 9999999999875 44467777654 3333333333 2344556
Q ss_pred CcEEEEEe
Q 007747 579 DKHYQWSM 586 (591)
Q Consensus 579 d~vGals~ 586 (591)
|++..|..
T Consensus 228 d~i~~l~~ 235 (243)
T cd03272 228 DKFYGVKF 235 (243)
T ss_pred CEEEEEEE
Confidence 77666544
No 398
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.54 E-value=3.1e-15 Score=142.74 Aligned_cols=164 Identities=19% Similarity=0.160 Sum_probs=108.8
Q ss_pred ccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccccee---------eeecchhhhhhhcccce
Q 007747 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------GAVEQLRTHARRLQVPI 473 (591)
Q Consensus 403 L~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Ri---------gaveQl~~~~~~l~v~l 473 (591)
|-.+|..+..|+ ++-+|||||+||||+|+.|||++ |-+|+|.+.|.+.-.. +|..|...-. +.+|+
T Consensus 15 L~plS~qv~aGe--~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~--f~mpV 89 (248)
T COG4138 15 LGPLSGEVRAGE--ILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPP--FAMPV 89 (248)
T ss_pred ccccccccccce--EEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCc--chhhh
Confidence 345677788999 99999999999999999999996 5789999999987321 1222211100 01222
Q ss_pred e--ecCCCCCHHHHHHHHHHHhhhcCC----CcchhccchhHHHHHHHHHHHHhchhcCCCc-EEEEEecccCCCCHHHH
Q 007747 474 F--EKGYEKDPAIVAKEAIQEATRNGS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD-LVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 474 ~--~~~~~~d~~~~a~~al~~~~~~~~----d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd-lILLVDEPt~GlD~~~q 546 (591)
| ...+-++ ..++...-+.++..+. .+.+..+|||+.||+.|+....++....||+ -+|++|||.++||...+
T Consensus 90 ~~YL~L~qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~ 168 (248)
T COG4138 90 WHYLTLHQPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ 168 (248)
T ss_pred hhhhhhcCch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH
Confidence 2 1122222 2222222222222222 4667889999999999999888887777775 24444999999997654
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
..+...|..++..+.++.+++|-++.
T Consensus 169 -~aLdrll~~~c~~G~~vims~HDLNh 194 (248)
T COG4138 169 -SALDRLLSALCQQGLAIVMSSHDLNH 194 (248)
T ss_pred -HHHHHHHHHHHhCCcEEEEeccchhh
Confidence 56667888888886666666655543
No 399
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.52 E-value=5.9e-14 Score=139.31 Aligned_cols=168 Identities=14% Similarity=0.024 Sum_probs=97.1
Q ss_pred ccccccc-cCCceEEEEEccCCCcHHHHHHHHHhhh-hcCCcEEEEc--------ccccceeeeecchhhhhhhccccee
Q 007747 405 DVHAAKE-QRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMA--------ACDTFRSGAVEQLRTHARRLQVPIF 474 (591)
Q Consensus 405 ~is~~i~-~Gep~ii~LvGpNGsGKTTlL~kLAg~l-~~~~G~V~i~--------~~Dt~RigaveQl~~~~~~l~v~l~ 474 (591)
+|+|... +|+ +++|+||||+||||++..|++.+ -+..+..... +....+++.++|.... .+.+.
T Consensus 19 ~i~~~~~~~~~--~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~--~~~~~-- 92 (213)
T cd03279 19 VIDFTGLDNNG--LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGK--KYRVE-- 92 (213)
T ss_pred EEeCCCCCccC--EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCe--EEEEE--
Confidence 3455433 366 99999999999999999999643 2332222221 1111246666665411 11111
Q ss_pred ecCCCCCHHHHHHH-HHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhch-----hcCCCcEEEEEecccCCCCHHHHH
Q 007747 475 EKGYEKDPAIVAKE-AIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLI-----YLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 475 ~~~~~~d~~~~a~~-al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~-----~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
+..+.+....... .+....... .+..+..+|||+++++.++++|+.-- ...+|+++|| ||||+++|+....
T Consensus 93 -r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll-DEp~~~lD~~~~~ 170 (213)
T cd03279 93 -RSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI-DEGFGTLDPEALE 170 (213)
T ss_pred -EecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE-eCCcccCCHHHHH
Confidence 1113333322211 112221222 25667889999999999999997210 0125678888 9999999998864
Q ss_pred HHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
.+.+.|..+...+.++.+.+|...-++.+++++
T Consensus 171 -~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i 203 (213)
T cd03279 171 -AVATALELIRTENRMVGVISHVEELKERIPQRL 203 (213)
T ss_pred -HHHHHHHHHHhCCCEEEEEECchHHHHhhCcEE
Confidence 455777777654444444444444455555543
No 400
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.51 E-value=7.1e-14 Score=137.64 Aligned_cols=165 Identities=15% Similarity=0.044 Sum_probs=98.8
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc-----E----EEEcccccceeeeecchhhhhhhcccceee
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-----S----VMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G-----~----V~i~~~Dt~RigaveQl~~~~~~l~v~l~~ 475 (591)
++.+.+.+| +.+|+||||+||||+|..|+..+..... . +.-.+.+..++.+++|...... +
T Consensus 14 ~~~l~f~~g---l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--~----- 83 (198)
T cd03276 14 HLQIEFGPR---VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--N----- 83 (198)
T ss_pred eeEEecCCC---eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC--C-----
Confidence 344454444 8899999999999999999865432211 0 0001111223333333222111 0
Q ss_pred cCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q 007747 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~ 555 (591)
..+ ......+.++++. ....+..+..+|+||++++.++++|+- ....+|+++|| |||++|+|+..+.. +.+.|.
T Consensus 84 ~~~-~~~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~-~~~~~p~illl-DEP~~glD~~~~~~-~~~~l~ 157 (198)
T cd03276 84 PLC-VLSQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSL-WEVMESPFRCL-DEFDVFMDMVNRKI-STDLLV 157 (198)
T ss_pred cCC-HHHHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHH-hcccCCCEEEe-cCcccccCHHHHHH-HHHHHH
Confidence 000 0112334444443 222366778999999999999999831 01179999999 99999999998754 446666
Q ss_pred HhhcC---CCCccceEEEeccccccCCcEEEEEe
Q 007747 556 DLSSS---PNPQLIDGILLTKFDTIDDKHYQWSM 586 (591)
Q Consensus 556 ~l~~~---~~~~~it~IIlTK~D~i~d~vGals~ 586 (591)
.+... ..++.++.|.++.+..+ |++|.+-+
T Consensus 158 ~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~ 190 (198)
T cd03276 158 KEAKKQPGRQFIFITPQDISGLASS-DDVKVFRM 190 (198)
T ss_pred HHHhcCCCcEEEEEECCcccccccc-cceeEEEe
Confidence 66432 13455666667777775 77887655
No 401
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.49 E-value=2e-14 Score=143.11 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=93.4
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcc---c-c
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ---V-P 472 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~---v-~ 472 (591)
+....+++++++ + +++|+|||||||||++++|+.++-. .+ .....-+++++.|...+...+. + .
T Consensus 14 ~~~~~~l~~~~~-----~--i~~ivGpNGaGKSTll~~i~~~~G~---~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 81 (212)
T cd03274 14 YAGEQVIGPFHK-----S--FSAIVGPNGSGKSNVIDSMLFVFGF---RA--SKMRQKKLSDLIHNSAGHPNLDSCSVEV 81 (212)
T ss_pred CCCCeeeccCCC-----C--eEEEECCCCCCHHHHHHHHHHHhcc---CH--HHhhhhhHHHHhcCCCCCCCCceEEEEE
Confidence 345567777765 4 9999999999999999999844211 10 0000113445444433222221 1 1
Q ss_pred eeecC--------CCC---CHHHH--HHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 473 IFEKG--------YEK---DPAIV--AKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 473 l~~~~--------~~~---d~~~~--a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
++... ++. ..... ..++.+.+.+.+ .+..+..+|+||++++.++++++. .....|+++++ ||||
T Consensus 82 ~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~-~~~~~p~ilil-DEPt 159 (212)
T cd03274 82 HFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFAL-HHYKPTPLYVM-DEID 159 (212)
T ss_pred EEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHh-cccCCCCEEEE-cCCC
Confidence 11111 010 00000 012222223222 355678899999999999999960 00013688888 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc---cCCcEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT---IDDKHYQ 583 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~---i~d~vGa 583 (591)
+|+|+..+ ..+.+.|..+.. ..+.+++|..+. ++|++-.
T Consensus 160 ~gLD~~~~-~~l~~~l~~~~~-----~~~~iivs~~~~~~~~~d~v~~ 201 (212)
T cd03274 160 AALDFRNV-SIVANYIKERTK-----NAQFIVISLRNNMFELADRLVG 201 (212)
T ss_pred cCCCHHHH-HHHHHHHHHHcC-----CCEEEEEECcHHHHHhCCEEEE
Confidence 99999987 456577777643 234566665443 3444433
No 402
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=2.7e-13 Score=139.16 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=61.7
Q ss_pred HHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCC---CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007747 488 EAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNN---PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (591)
Q Consensus 488 ~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~---PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (591)
++++.+++.. .+..+..+|||++||+.|+++|. .+ |+++|| ||||+|||+.++. .+.+.|..+.+.+.
T Consensus 151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~-----~~~~~p~lllL-DEPtsgLD~~~~~-~l~~~L~~l~~~g~ 223 (261)
T cd03271 151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS-----KRSTGKTLYIL-DEPTTGLHFHDVK-KLLEVLQRLVDKGN 223 (261)
T ss_pred HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHh-----cCCCCCcEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhCCC
Confidence 3444444432 35667889999999999999999 65 788888 9999999999974 45577888776555
Q ss_pred CccceEEEeccccccCCcEEEE
Q 007747 563 PQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 563 ~~~it~IIlTK~D~i~d~vGal 584 (591)
++.+..|-+.-+. .+|++..+
T Consensus 224 tvIiitH~~~~i~-~aD~ii~L 244 (261)
T cd03271 224 TVVVIEHNLDVIK-CADWIIDL 244 (261)
T ss_pred EEEEEeCCHHHHH-hCCEEEEe
Confidence 5555555444443 35554433
No 403
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.45 E-value=1.4e-13 Score=149.60 Aligned_cols=143 Identities=16% Similarity=0.144 Sum_probs=99.4
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhc---ccceeecCC
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL---QVPIFEKGY 478 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l---~v~l~~~~~ 478 (591)
++++++|.+..+. .+++|||||+||||+|+.|.|.+.|+.|.|.-.... +++...|-....--+ -+.++...+
T Consensus 405 iy~~l~fgid~~s--rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~--~~~~y~Qh~~e~ldl~~s~le~~~~~~ 480 (614)
T KOG0927|consen 405 IYKKLNFGIDLDS--RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN--KLPRYNQHLAEQLDLDKSSLEFMMPKF 480 (614)
T ss_pred hhhhhhcccCccc--ceeEecCCCCchhhhHHHHhhccccccccccccccc--cchhhhhhhHhhcCcchhHHHHHHHhc
Confidence 4455556666777 899999999999999999999999999987654332 233334422111111 111222223
Q ss_pred C-CCHHHHHHHHHHHhhhcCC--CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q 007747 479 E-KDPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 479 ~-~d~~~~a~~al~~~~~~~~--d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~ 555 (591)
. ....+....++.++++.+. ++.+-.+|+|++.|+.+++.+. .+|.++|| ||||+|||.... ....++|.
T Consensus 481 ~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~-----kqP~lLlL-DEPtnhLDi~ti-d~laeaiN 553 (614)
T KOG0927|consen 481 PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAV-----KQPHLLLL-DEPTNHLDIETI-DALAEAIN 553 (614)
T ss_pred cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHh-----cCCcEEEe-cCCCcCCCchhH-HHHHHHHh
Confidence 3 2455666777877777643 4667788999999999999999 89999999 999999998764 33444444
No 404
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.45 E-value=2.1e-13 Score=134.87 Aligned_cols=150 Identities=13% Similarity=0.041 Sum_probs=93.6
Q ss_pred EEEEEccCCCcHHHHHHHHH----hhhhcCCcEEEEc------ccccceeeeecchhhhhhhccc----ceeecCCCCCH
Q 007747 417 VVVFVGVNGVGKSTNLAKVA----YWLLQHKVSVMMA------ACDTFRSGAVEQLRTHARRLQV----PIFEKGYEKDP 482 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLA----g~l~~~~G~V~i~------~~Dt~RigaveQl~~~~~~l~v----~l~~~~~~~d~ 482 (591)
+++|+||||+||||+|..|+ |...+..+.+... +..-.++++++|... .+.+.+ .++...... +
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~~~~~~~~~~-~ 101 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSLAILENVIFC-H 101 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEhhHhhceeee-c
Confidence 99999999999999999996 6656666654311 111235778887652 111111 111111000 1
Q ss_pred HHHHHHHHHHhhhcCCCcchhccchhHHHH------HHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q 007747 483 AIVAKEAIQEATRNGSDVVLVDTAGRMQDN------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (591)
Q Consensus 483 ~~~a~~al~~~~~~~~d~vliDtSGg~~qr------~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~ 556 (591)
...+.+. ++..+.++|+|++++ +.++++|. .+|+++|| |||+++||+..+...+.+.|.+
T Consensus 102 ~~~~~~~--------~~~~~~~LS~G~~~~~~la~rlala~al~-----~~p~illl-DEP~~~LD~~~~~~~l~~~l~~ 167 (204)
T cd03240 102 QGESNWP--------LLDMRGRCSGGEKVLASLIIRLALAETFG-----SNCGILAL-DEPTTNLDEENIEESLAEIIEE 167 (204)
T ss_pred hHHHHHH--------HhcCccccCccHHHHHHHHHHHHHHHHhc-----cCCCEEEE-cCCccccCHHHHHHHHHHHHHH
Confidence 1111111 155677899999996 67788888 89999999 9999999998865255577777
Q ss_pred hhcC-CCCccceEEEeccccccCCcEEE
Q 007747 557 LSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 557 l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+... +.++.+.+|...-++. +|++..
T Consensus 168 ~~~~~~~~iiiitH~~~~~~~-~d~i~~ 194 (204)
T cd03240 168 RKSQKNFQLIVITHDEELVDA-ADHIYR 194 (204)
T ss_pred HHhccCCEEEEEEecHHHHhh-CCEEEE
Confidence 7654 4445555555544443 555543
No 405
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=6.5e-13 Score=141.02 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=90.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhc-----ccceeecCCCCCHHHHHHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-----QVPIFEKGYEKDPAIVAKEAIQ 491 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l-----~v~l~~~~~~~d~~~~a~~al~ 491 (591)
.|+||||||+||||+|..|.|-+.|+.|...-. -..|||...|-.. +.| -+.+..+.+.. +...+..++-
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn--hrL~iG~FdQh~~--E~L~~Eetp~EyLqr~FNl-pyq~ARK~LG 689 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN--HRLRIGWFDQHAN--EALNGEETPVEYLQRKFNL-PYQEARKQLG 689 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcCCCCCcchhhcc--ceeeeechhhhhH--HhhccccCHHHHHHHhcCC-ChHHHHHHhh
Confidence 699999999999999999999999998875432 2357888887432 222 11222222221 2233445555
Q ss_pred HhhhcCC--CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHh
Q 007747 492 EATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 557 (591)
Q Consensus 492 ~~~~~~~--d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l 557 (591)
.+++... .+.+.|+|||++-|+.|+..-. ..||++|| ||||+.||..+. ..+.+++.++
T Consensus 690 ~fGL~sHAHTikikdLSGGQKaRValaeLal-----~~PDvlIL-DEPTNNLDIESI-DALaEAIney 750 (807)
T KOG0066|consen 690 TFGLASHAHTIKIKDLSGGQKARVALAELAL-----GGPDVLIL-DEPTNNLDIESI-DALAEAINEY 750 (807)
T ss_pred hhhhhhccceEeeeecCCcchHHHHHHHHhc-----CCCCEEEe-cCCCCCcchhhH-HHHHHHHHhc
Confidence 5554332 3778899999999999998666 89999999 999999998774 4444555544
No 406
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=7.5e-13 Score=158.94 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=116.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhh-----hhhhcccceee
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-----HARRLQVPIFE 475 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~-----~~~~l~v~l~~ 475 (591)
+.|+||||.+++|+ .+++||+.|||||+||..|.|-+....|+|.+.|. ++|++|.+- .-+| |- |.
T Consensus 535 ~tL~dIn~~i~~G~--lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~pWI~ngTvreN--IL-FG 605 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQ--LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQPWIQNGTVREN--IL-FG 605 (1381)
T ss_pred ccccceeEEecCCC--EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEeccccHhhCCcHHHh--hh-cC
Confidence 38999999999999 99999999999999999999999999999999886 899999763 3333 22 22
Q ss_pred cCCCCCHHHHHHHHHHHhhhc------C-CC-----cchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 476 KGYEKDPAIVAKEAIQEATRN------G-SD-----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~~~~~------~-~d-----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
..|. .+..++.++.+.+. . -| -.=+.+||||+||+.||||+- .+.|++|| |+|++++|+
T Consensus 606 ~~~d---~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY-----~~adIYLL-DDplSAVDa 676 (1381)
T KOG0054|consen 606 SPYD---EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVY-----QDADIYLL-DDPLSAVDA 676 (1381)
T ss_pred cccc---HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHh-----ccCCEEEE-cCcchhhhH
Confidence 2222 22333444333221 1 12 223568999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
..-...|++.+..+.. .+++.+.+|.+.-+..
T Consensus 677 hvg~~if~~ci~~~L~-~KT~ILVTHql~~L~~ 708 (1381)
T KOG0054|consen 677 HVGKHIFEECIRGLLR-GKTVILVTHQLQFLPH 708 (1381)
T ss_pred hhhHHHHHHHHHhhhc-CCEEEEEeCchhhhhh
Confidence 9888899888855443 2455555554444443
No 407
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.42 E-value=2.7e-13 Score=147.48 Aligned_cols=173 Identities=21% Similarity=0.195 Sum_probs=104.5
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEE--cccccc-e----eeee----cchhh--
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM--AACDTF-R----SGAV----EQLRT-- 464 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i--~~~Dt~-R----igav----eQl~~-- 464 (591)
..+.+++|..|++..|+ -++|+||||+||||+|++|++-..|..-.+-+ .....- + +-++ ++.+.
T Consensus 86 ~g~~l~kd~~~El~~g~--rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rl 163 (614)
T KOG0927|consen 86 HGVELIKDVTLELNRGR--RYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRL 163 (614)
T ss_pred CCceeeeeeeEEecCCc--eEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHH
Confidence 45678899999999999 99999999999999999999988775433322 221110 0 0011 11111
Q ss_pred --hhhhc-----------ccceeecCCCCCHHHHHHHHHHHhhhcCC-----CcchhccchhHHHHHHHHHHHHhchhcC
Q 007747 465 --HARRL-----------QVPIFEKGYEKDPAIVAKEAIQEATRNGS-----DVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (591)
Q Consensus 465 --~~~~l-----------~v~l~~~~~~~d~~~~a~~al~~~~~~~~-----d~vliDtSGg~~qr~~LaraL~kl~~~~ 526 (591)
+.+.+ ...++.+....+......++...+...++ +..+.|+|||.+.|++|||+|. .
T Consensus 164 e~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf-----~ 238 (614)
T KOG0927|consen 164 EYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALF-----Q 238 (614)
T ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHh-----c
Confidence 11111 01122222222222222222222222222 4778999999999999999999 9
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcE
Q 007747 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKH 581 (591)
Q Consensus 527 ~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~v 581 (591)
+|+++|| ||||++||.... .-+.+.|..+..- ++.|..|---.++.+|.++
T Consensus 239 kP~LLLL-DEPtnhLDleA~-~wLee~L~k~d~~--~lVi~sh~QDfln~vCT~I 289 (614)
T KOG0927|consen 239 KPDLLLL-DEPTNHLDLEAI-VWLEEYLAKYDRI--ILVIVSHSQDFLNGVCTNI 289 (614)
T ss_pred CCCEEEe-cCCccCCCHHHH-HHHHHHHHhccCc--eEEEEecchhhhhhHhhhh
Confidence 9999999 999999998775 3333444433211 2344444444566666554
No 408
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=1e-12 Score=157.87 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=110.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhh---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHAR--- 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~--- 467 (591)
..+|++|||.+++|+ -|+|||.+||||||++..|-++..|.+|+|.|+|.|+ .|++.++|.+.+..
T Consensus 1153 p~VLk~is~~I~p~e--KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGE--KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred cchhcCceEEEcCCc--eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 368999999999999 9999999999999999999999999999999999998 36899999886533
Q ss_pred hcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchhc----cchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 468 RLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 468 ~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vliD----tSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
+.|+.-+.. |.. +..-+|++.+.+ .+.|..+.+ .|-||||-++|||||. .+..+++| |
T Consensus 1231 R~NLDPf~e-~sD---~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL-----r~skILvL-D 1300 (1381)
T KOG0054|consen 1231 RFNLDPFDE-YSD---DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL-----RKSKILVL-D 1300 (1381)
T ss_pred ccccCcccc-cCH---HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh-----ccCCEEEE-e
Confidence 234433221 221 223445554432 234555543 6999999999999999 89999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q 007747 536 EALVGNDAVDQLSKFNQKLAD 556 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~ 556 (591)
|||++.|+..- ...++.++.
T Consensus 1301 EATAsVD~~TD-~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1301 EATASVDPETD-ALIQKTIRE 1320 (1381)
T ss_pred cccccCChHHH-HHHHHHHHH
Confidence 99999999763 344455544
No 409
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.42 E-value=6.3e-13 Score=140.08 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=114.4
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ce--eeeecchhhhhhhcccc
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FR--SGAVEQLRTHARRLQVP 472 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~R--igaveQl~~~~~~l~v~ 472 (591)
-+..||+++.+|+ ++.|+|.|||||||++..|.|+++|+.|+|+++|..+ || +.+|+-...+...+
T Consensus 338 hvgPiNl~ikrGe--lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l--- 412 (546)
T COG4615 338 HVGPINLTIKRGE--LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL--- 412 (546)
T ss_pred eecceeeEEecCc--EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh---
Confidence 3567999999999 9999999999999999999999999999999999876 34 33444332222221
Q ss_pred eeecCCCCCHHHHHHHHHHHhhh------cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 473 IFEKGYEKDPAIVAKEAIQEATR------NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 473 l~~~~~~~d~~~~a~~al~~~~~------~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
........+. .+..-++++++ .+-.....++|.|+++|+++.-||. -+.|+++| ||=.+-+||.-+
T Consensus 413 -l~~e~~as~q-~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~All-----EeR~Ilv~-DEWAADQDPaFR 484 (546)
T COG4615 413 -LGPEGKASPQ-LIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL-----EERDILVL-DEWAADQDPAFR 484 (546)
T ss_pred -hCCccCCChH-HHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHH-----hhCCeEEe-ehhhccCChHHH
Confidence 1110112232 22333333332 2234667889999999999999999 78899999 999999999998
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
...++..|-.++++++ |++.+|.=|
T Consensus 485 R~FY~~lLp~LK~qGK----TI~aIsHDd 509 (546)
T COG4615 485 REFYQVLLPLLKEQGK----TIFAISHDD 509 (546)
T ss_pred HHHHHHHhHHHHHhCC----eEEEEecCc
Confidence 8777788888887754 456666544
No 410
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.41 E-value=1.4e-12 Score=132.40 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=85.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc--------c------cceeeeecchhh--h---hhhc---cccee
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--------D------TFRSGAVEQLRT--H---ARRL---QVPIF 474 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~--------D------t~RigaveQl~~--~---~~~l---~v~l~ 474 (591)
+++|+|||||||||+|..|++.+.+..+++..... . ...+..+++... + .+.+ ...++
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 89999999999999999999988765555543221 1 122222222110 0 0000 11111
Q ss_pred ecCCCCCHHHHHHHHHHHhhhcCC-----------------------CcchhccchhHHHHHHHHHHHHhchhcC----C
Q 007747 475 EKGYEKDPAIVAKEAIQEATRNGS-----------------------DVVLVDTAGRMQDNEPLMRALSKLIYLN----N 527 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~~~~~-----------------------d~vliDtSGg~~qr~~LaraL~kl~~~~----~ 527 (591)
..+..... ..+.+.++.++.... +..+.++|||+++++.|+++|+ . +
T Consensus 104 ingk~~s~-~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~-----~~~~~~ 177 (247)
T cd03275 104 INGKVVSL-KEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA-----IHSYQP 177 (247)
T ss_pred ECCEEecH-HHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH-----HhccCC
Confidence 11211122 223344444333211 1234789999999999999998 5 3
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 528 PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
|+++|| ||||+|+|+..+. .+.+.|..+...+ .+.+++|
T Consensus 178 p~~lll-DEPt~~LD~~~~~-~l~~~i~~~~~~g----~~vi~is 216 (247)
T cd03275 178 APFFVL-DEVDAALDNTNVG-KVASYIREQAGPN----FQFIVIS 216 (247)
T ss_pred CCEEEE-ecccccCCHHHHH-HHHHHHHHhccCC----cEEEEEE
Confidence 788888 9999999998864 4446777775443 3444444
No 411
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.1e-12 Score=144.08 Aligned_cols=242 Identities=13% Similarity=0.200 Sum_probs=163.5
Q ss_pred cCChhchHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHhcCCCCCCcc-----chHHHHHHHHHHHHHHHcCC
Q 007747 329 NLDKADLEPALKALKDRLMTKNVAE-------EIAEKLCESVAASLEGKKLASFT-----RISSIVQAAMEEALVRILTP 396 (591)
Q Consensus 329 ~l~~~dl~~~l~~i~~~Ll~~~V~~-------~ia~~l~~~v~~~l~g~~~~~~~-----~~~~~v~~~l~~~L~~il~~ 396 (591)
.|+..+.+..++-|++ |.+.||+. +=+.++|+++--.-.|+.+++.. +..+.++.-+-.++...+.+
T Consensus 175 aLt~~E~~~Lf~~ir~-Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~MvGr~~~~~~~~ 253 (500)
T COG1129 175 ALTVKETERLFDLIRR-LKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGRELEDLFPE 253 (500)
T ss_pred cCCHHHHHHHHHHHHH-HHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhhCcchhhhccc
Confidence 5677777777776665 88899873 33456666653322354443322 22333333332355555431
Q ss_pred --C----C--------c-cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------
Q 007747 397 --R----R--------S-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------- 454 (591)
Q Consensus 397 --~----~--------~-~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------- 454 (591)
. . + ...++|+||++.+|| |++|.|.=|+|+|-++..|.|+..+..|+|.+.|..+-
T Consensus 254 ~~~~~~~~~~l~v~~l~~~~~~~dvSf~vr~GE--IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 254 PPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGE--ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred ccccCCCCcEEEEecCCCCCceeCceeEEeCCc--EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHH
Confidence 0 0 0 113678999999999 99999999999999999999998889999999998761
Q ss_pred ---eeeeecchhh---------hhhhcccceeec---C--C-CCCHHHHHHHHHHHhhhc--CCCcchhccchhHHHHHH
Q 007747 455 ---RSGAVEQLRT---------HARRLQVPIFEK---G--Y-EKDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEP 514 (591)
Q Consensus 455 ---RigaveQl~~---------~~~~l~v~l~~~---~--~-~~d~~~~a~~al~~~~~~--~~d~vliDtSGg~~qr~~ 514 (591)
-+++|+..+. ..+|+.++.... . . .......+.+.++.+... ..+..+..+|||.||++.
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 2778777663 355555552211 1 1 111223444555554432 335777889999999999
Q ss_pred HHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc---cCCcEEE
Q 007747 515 LMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT---IDDKHYQ 583 (591)
Q Consensus 515 LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~---i~d~vGa 583 (591)
|+|+|. .+|+++|| ||||.|.|.-...+.+ +++.+++.++..+. +|-|.+++ +||++-+
T Consensus 412 larwL~-----~~p~vLil-DEPTRGIDVGAK~eIy-~li~~lA~~G~ail---~iSSElpEll~~~DRIlV 473 (500)
T COG1129 412 LARWLA-----TDPKVLIL-DEPTRGIDVGAKAEIY-RLIRELAAEGKAIL---MISSELPELLGLSDRILV 473 (500)
T ss_pred HHHHHh-----cCCCEEEE-CCCCcCcccchHHHHH-HHHHHHHHCCCEEE---EEeCChHHHHhhCCEEEE
Confidence 999999 99999999 9999999999887766 88999998755443 44455554 5666654
No 412
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.38 E-value=1.7e-12 Score=145.01 Aligned_cols=149 Identities=17% Similarity=0.115 Sum_probs=101.9
Q ss_pred CCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhh-c-ccc
Q 007747 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARR-L-QVP 472 (591)
Q Consensus 395 ~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~-l-~v~ 472 (591)
+|... ..|++.++.+++|+ .+.|.|++||||||+++.|||+-+--.|+|.+-.. -++-+++|.+.+..- | .+-
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~--~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~--~~~lflpQ~PY~p~GtLre~l 476 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGE--RLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD--SALLFLPQRPYLPQGTLREAL 476 (604)
T ss_pred CCCCC-eeeccceeeeCCCC--EEEEECCCCCCHHHHHHHHhccCccCCCceecCCC--CceEEecCCCCCCCccHHHHH
Confidence 34443 67899999999999 99999999999999999999999888899887622 234467776544221 1 111
Q ss_pred eeecCCCCCHHHHHHHHHHHhhhcCC-------CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHH
Q 007747 473 IFEKGYEKDPAIVAKEAIQEATRNGS-------DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (591)
Q Consensus 473 l~~~~~~~d~~~~a~~al~~~~~~~~-------d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 545 (591)
.|......-..+...+++..+++..+ +.==.-+|+|+|||+++||.|. ++|++++| ||+|+++|...
T Consensus 477 ~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL-----~kP~~v~L-DEATsALDe~~ 550 (604)
T COG4178 477 CYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL-----HKPKWVFL-DEATSALDEET 550 (604)
T ss_pred hCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH-----cCCCEEEE-ecchhccChHH
Confidence 12211111112233444544443221 1111237999999999999999 99999999 99999999988
Q ss_pred HHHHHHHHHH
Q 007747 546 QLSKFNQKLA 555 (591)
Q Consensus 546 q~~~f~~~L~ 555 (591)
+...+ +.++
T Consensus 551 e~~l~-q~l~ 559 (604)
T COG4178 551 EDRLY-QLLK 559 (604)
T ss_pred HHHHH-HHHH
Confidence 75444 4443
No 413
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=7.5e-13 Score=143.40 Aligned_cols=153 Identities=20% Similarity=0.171 Sum_probs=92.6
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEE--EEcccccceeeeecchhhhhhhccccee
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV--MMAACDTFRSGAVEQLRTHARRLQVPIF 474 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V--~i~~~Dt~RigaveQl~~~~~~l~v~l~ 474 (591)
++...+|.+-++++..|+ .++|||+||+||||||+.|+.- .-....| .+.|+||.- .|--..++.-...|.
T Consensus 90 ~G~k~LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~----~~~~l~~D~~~~dfl 162 (582)
T KOG0062|consen 90 YGGKILLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEA----LQSVLESDTERLDFL 162 (582)
T ss_pred ecchhhhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHH----HhhhhhccHHHHHHH
Confidence 345567888888888999 9999999999999999999971 1111111 133444421 010000000001111
Q ss_pred ecC---CCC-CHHHHHHHHHHHhhhcCCC-----cchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHH
Q 007747 475 EKG---YEK-DPAIVAKEAIQEATRNGSD-----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (591)
Q Consensus 475 ~~~---~~~-d~~~~a~~al~~~~~~~~d-----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 545 (591)
... ... ...+++..++.- .+|. ...-++|||=+.|++|||||- .+||++|| ||||+.||..+
T Consensus 163 ~~e~~l~~~~~l~ei~~~~L~g---lGFt~emq~~pt~slSGGWrMrlaLARAlf-----~~pDlLLL-DEPTNhLDv~a 233 (582)
T KOG0062|consen 163 AEEKELLAGLTLEEIYDKILAG---LGFTPEMQLQPTKSLSGGWRMRLALARALF-----AKPDLLLL-DEPTNHLDVVA 233 (582)
T ss_pred HhhhhhhccchHHHHHHHHHHh---CCCCHHHHhccccccCcchhhHHHHHHHHh-----cCCCEEee-cCCcccchhHH
Confidence 000 000 122222223332 3342 556788999999999999999 99999999 99999999987
Q ss_pred HHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 546 QLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
.+ | |..+.. +..+|++|++.
T Consensus 234 v~--W---Le~yL~---t~~~T~liVSH 253 (582)
T KOG0062|consen 234 VA--W---LENYLQ---TWKITSLIVSH 253 (582)
T ss_pred HH--H---HHHHHh---hCCceEEEEec
Confidence 53 2 333322 34577777764
No 414
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.34 E-value=2.1e-12 Score=138.30 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=108.8
Q ss_pred ccccccccc-----cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccce--ee
Q 007747 403 LRDVHAAKE-----QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI--FE 475 (591)
Q Consensus 403 L~~is~~i~-----~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l--~~ 475 (591)
+.++.+++. .|+ |++++||||-||||+++.|||.++|+.|. ..+ -+++|-+|.-.---...|.- ..
T Consensus 352 ~g~F~L~V~~G~i~~gE--vigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~-~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 352 YGDFKLEVEEGEIYDGE--VIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED-LKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred cCceEEEecCCeeecce--EEEEECCCCcchHHHHHHHhccccCCCCC----Ccc-ceEeecceeecCCCCCcHHHHHHH
Confidence 345555554 567 99999999999999999999999999887 222 35666666321100001110 00
Q ss_pred c---CCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 476 K---GYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 476 ~---~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
. .+... ....+.++-+.+.. ++..+-++|||+.||+++|.+|. .+.|+.|| |||++-||...+. ...
T Consensus 425 ~~~~~~~~s--~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~-----reADlYll-DEPSA~LDvEqR~-~va 495 (591)
T COG1245 425 AIRSAFGSS--YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS-----READLYLL-DEPSAYLDVEQRI-IVA 495 (591)
T ss_pred hhhhhcccc--hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhc-----cccCEEEe-cCchhhccHHHHH-HHH
Confidence 0 00100 11122333333333 36788899999999999999999 99999999 9999999987664 445
Q ss_pred HHHHHhhcCC-CCccceEEEeccccccCCcEEE
Q 007747 552 QKLADLSSSP-NPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 552 ~~L~~l~~~~-~~~~it~IIlTK~D~i~d~vGa 583 (591)
++++.+.... ++..+--|-+--+|-++|++-.
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~~dyvsDr~iv 528 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYMIDYVSDRLIV 528 (591)
T ss_pred HHHHHHHhhcCceEEEEecceehhhhhhceEEE
Confidence 7777776543 3444555667778888887654
No 415
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.26 E-value=5.2e-12 Score=124.21 Aligned_cols=132 Identities=18% Similarity=0.194 Sum_probs=82.6
Q ss_pred cccccccccCCceEEEEEccCCCcHHHHHHHHH-hhhhcCCc-EEEEcccccceeeeecchhhhhhhcccceeecCCCCC
Q 007747 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA-YWLLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 481 (591)
Q Consensus 404 ~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLA-g~l~~~~G-~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d 481 (591)
-++++.+..|+ .+++|+||||+||||+|+.|+ ..+.+..| .|- +.....++++.|.... + +.
T Consensus 18 ~~~~~~i~~~~-~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp--~~~~~~~~~~~~~~~~---l---------g~- 81 (200)
T cd03280 18 VPLDIQLGENK-RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP--AAEGSSLPVFENIFAD---I---------GD- 81 (200)
T ss_pred EcceEEECCCc-eEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc--ccccccCcCccEEEEe---c---------Cc-
Confidence 35778887873 289999999999999999998 44444333 221 1111123333332110 0 00
Q ss_pred HHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC
Q 007747 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 482 ~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~ 561 (591)
. ...+..+-..|++|+++..+++++ .+|+++|+ |||+.|+|+..........+..+.+.
T Consensus 82 ~-------------~~l~~~~s~fs~g~~~~~~i~~~~------~~p~llll-DEp~~glD~~~~~~i~~~~l~~l~~~- 140 (200)
T cd03280 82 E-------------QSIEQSLSTFSSHMKNIARILQHA------DPDSLVLL-DELGSGTDPVEGAALAIAILEELLER- 140 (200)
T ss_pred h-------------hhhhcCcchHHHHHHHHHHHHHhC------CCCcEEEE-cCCCCCCCHHHHHHHHHHHHHHHHhc-
Confidence 0 011223456799999998888764 58999999 99999999998755444556666543
Q ss_pred CCccceEEEecccc
Q 007747 562 NPQLIDGILLTKFD 575 (591)
Q Consensus 562 ~~~~it~IIlTK~D 575 (591)
+.+.+++|...
T Consensus 141 ---~~~vi~~tH~~ 151 (200)
T cd03280 141 ---GALVIATTHYG 151 (200)
T ss_pred ---CCEEEEECCHH
Confidence 34556666543
No 416
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.26 E-value=6.5e-12 Score=134.56 Aligned_cols=160 Identities=22% Similarity=0.217 Sum_probs=108.0
Q ss_pred ccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEE----cc-cccceeeeecchhhhhhhc---------------c
Q 007747 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM----AA-CDTFRSGAVEQLRTHARRL---------------Q 470 (591)
Q Consensus 411 ~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i----~~-~Dt~RigaveQl~~~~~~l---------------~ 470 (591)
.+|+ +++|+|+||.||||.+++|+|-+.|+=|+.-= .. .+-||- .+|..|...+ .
T Consensus 98 r~G~--V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrG---tELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 98 RPGK--VVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRG---TELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCc--EEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhh---hHHHHHHHHHHcCCcceecchHHHHH
Confidence 4787 99999999999999999999999998665321 00 001321 1111221111 1
Q ss_pred cceeecCC------CCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 471 VPIFEKGY------EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 471 v~l~~~~~------~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+|-+..+. ..+......+.++.+.+.+. +.-+-++|||+.||++++.++. .+.|+.+| |||++-||.
T Consensus 173 iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~-----rdADvY~F-DEpsSyLDi 246 (591)
T COG1245 173 IPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALL-----RDADVYFF-DEPSSYLDI 246 (591)
T ss_pred HHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHh-----ccCCEEEE-cCCcccccH
Confidence 12111111 11122234455666666654 7888899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vG 582 (591)
..++. ..++++.+....+.+.+--|-+.-+|-++|-+.
T Consensus 247 ~qRl~-~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vh 284 (591)
T COG1245 247 RQRLN-AARVIRELAEDGKYVIVVEHDLAVLDYLSDFVH 284 (591)
T ss_pred HHHHH-HHHHHHHHhccCCeEEEEechHHHHHHhhheeE
Confidence 87754 447888888765666666666777887777654
No 417
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.23 E-value=1.6e-11 Score=120.23 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=102.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce------eeeecchh-hhhhhc---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------SGAVEQLR-THARRL--- 469 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R------igaveQl~-~~~~~l--- 469 (591)
-+++-|+|+.++.|. ...+||.||+||||+|+.|+|-....+|.|.+.|.+.|+ .|..--|. .+....
T Consensus 27 dP~~~Dfnldlp~gs--RcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~a 104 (291)
T KOG2355|consen 27 DPIFFDFNLDLPAGS--RCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIA 104 (291)
T ss_pred CceEEEEeeccCCCc--eEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEeccccccccccc
Confidence 367889999999998 899999999999999999999777777999999999886 22211111 011111
Q ss_pred -ccceee---------cCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 470 -QVPIFE---------KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 470 -~v~l~~---------~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
.+|+.. ..-+.++ .+-...+..+.. +...++.-.|-|+++|+.|++-|. +|=.+||+||-|+
T Consensus 105 gevplq~D~sae~mifgV~g~dp-~Rre~LI~iLDI-dl~WRmHkvSDGqrRRVQicMGLL------~PfkVLLLDEVTV 176 (291)
T KOG2355|consen 105 GEVPLQGDISAEHMIFGVGGDDP-ERREKLIDILDI-DLRWRMHKVSDGQRRRVQICMGLL------KPFKVLLLDEVTV 176 (291)
T ss_pred ccccccccccHHHHHhhccCCCh-hHhhhhhhheec-cceEEEeeccccchhhhHHHHhcc------cceeEEEeeeeEe
Confidence 122211 1112333 333334433221 123556677999999999999998 5555555599999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
-||.+.++.. |.-+..+...++.+++..|.
T Consensus 177 DLDVlARadL----LeFlkeEce~RgatIVYATH 206 (291)
T KOG2355|consen 177 DLDVLARADL----LEFLKEECEQRGATIVYATH 206 (291)
T ss_pred ehHHHHHHHH----HHHHHHHHhhcCcEEEEEee
Confidence 9999998643 33333333334445444443
No 418
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.20 E-value=2.8e-11 Score=119.44 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=30.5
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
.+++++++. .|+ +++|+||||+||||+++.|++...
T Consensus 15 ~v~n~i~l~--~g~--~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 15 RVANDIDME--KKN--GILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred eecceEEEc--CCc--EEEEECCCCCChHHHHHHHHHHHH
Confidence 466788776 467 999999999999999999998654
No 419
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.17 E-value=1e-10 Score=144.10 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=59.7
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccC
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~ 578 (591)
+..+..+||||+|++.|+++|+. ...+|+++|| ||||+|||+.++.. +.+.|..+.+.+.++.+..|-+.-+ .++
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~--~~~~P~LLIL-DEPTsGLD~~~~~~-Ll~lL~~L~~~G~TVIiIsHdl~~i-~~a 878 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLA--PSKKPTLYVL-DEPTTGLHTHDIKA-LIYVLQSLTHQGHTVVIIEHNMHVV-KVA 878 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhh--cCCCCCEEEE-eCCCCCCCHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHH-HhC
Confidence 56778899999999999999961 1148999999 99999999999744 4477888876655555555544445 356
Q ss_pred CcEEEE
Q 007747 579 DKHYQW 584 (591)
Q Consensus 579 d~vGal 584 (591)
|++..|
T Consensus 879 DrVi~L 884 (1809)
T PRK00635 879 DYVLEL 884 (1809)
T ss_pred CEEEEE
Confidence 665444
No 420
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.16 E-value=1.8e-10 Score=111.79 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=69.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc-----ccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-----ACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~-----~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~ 491 (591)
+.+|+||||+|||++|..|+..+--...+.... ..+..|.+ .....|.+.... .
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~f~~---~---------- 82 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAG--------INSASVEITFDK---S---------- 82 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCC--------CceEEEEEEEEC---c----------
Confidence 899999999999999999986543221111000 01111111 111122221110 0
Q ss_pred HhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 492 ~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
++-.-..+...+ +|||+++++.|+++|+.. ...+|+++|+ |||++++|+..+.. +.+.|..+...
T Consensus 83 ~~~~~~~~~~~~-LS~Ge~~r~~Laral~~~-~~~~p~llil-DEp~~~LD~~~~~~-i~~~L~~~~~~ 147 (178)
T cd03239 83 YFLVLQGKVEQI-LSGGEKSLSALALIFALQ-EIKPSPFYVL-DEIDAALDPTNRRR-VSDMIKEMAKH 147 (178)
T ss_pred eEEecCCcCccc-CCHHHHHHHHHHHHHHHh-cCCCCCEEEE-ECCCCCCCHHHHHH-HHHHHHHHHhC
Confidence 001111222222 999999999999998610 1148999998 99999999998754 44677776544
No 421
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.14 E-value=6.9e-11 Score=116.02 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=120.2
Q ss_pred cCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC----CcEEEEcccccc-------------ee
Q 007747 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----KVSVMMAACDTF-------------RS 456 (591)
Q Consensus 394 l~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~----~G~V~i~~~Dt~-------------Ri 456 (591)
-++.+.+.+++.+|++.+.|+ +-+|||.+|+|||-..+.|||..+.+ .-+..+...|.. .+
T Consensus 14 ~TsqG~vK~VD~v~ltlnEGE--i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~i 91 (330)
T COG4170 14 KTSQGWVKAVDRVSMTLNEGE--IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNV 91 (330)
T ss_pred ecCCCceEeeeeeeeeeccce--eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccch
Confidence 356677889999999999999 99999999999999999999987642 122223333321 15
Q ss_pred eeecchhh--------hhhhc--ccceeecCCCC------CHHHHHHHHHHHhhhcCC-C---cchhccchhHHHHHHHH
Q 007747 457 GAVEQLRT--------HARRL--QVPIFEKGYEK------DPAIVAKEAIQEATRNGS-D---VVLVDTAGRMQDNEPLM 516 (591)
Q Consensus 457 gaveQl~~--------~~~~l--~v~l~~~~~~~------d~~~~a~~al~~~~~~~~-d---~vliDtSGg~~qr~~La 516 (591)
+.++|.+. .+..+ ++|.+.- .+. .....+-+.+..++..+. | .++..+.-|+-|++.+|
T Consensus 92 sMIFQeP~sCLDPS~~iG~QlIq~IP~wTf-kgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA 170 (330)
T COG4170 92 SMIFQEPQSCLDPSERVGRQLIQNIPAWTY-KGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIA 170 (330)
T ss_pred hhhhcCchhhcChHHHHHHHHHhhCccccc-cchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeee
Confidence 56666442 12222 4443210 011 111223333433333221 2 45677888999999999
Q ss_pred HHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC-CCccceEEEeccccccCCcEEE
Q 007747 517 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 517 raL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~D~i~d~vGa 583 (591)
.|++ ++|.++|. ||||+.+++..+.+.| ..|..+.+.. .++.+.++-++.+-+-||++-+
T Consensus 171 ~A~A-----nqPrLLIA-DEPTN~~e~~Tq~Qif-RLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~V 231 (330)
T COG4170 171 IALA-----NQPRLLIA-DEPTNSMEPTTQAQIF-RLLSRLNQNSNTTILLISHDLQMISQWADKINV 231 (330)
T ss_pred hhhc-----cCCceEec-cCCCcccCccHHHHHH-HHHHHhhccCCceEEEEcccHHHHHHHhhheEE
Confidence 9999 99999999 9999999999999888 6777776553 4455666666666666666544
No 422
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.13 E-value=2e-10 Score=135.79 Aligned_cols=78 Identities=18% Similarity=0.122 Sum_probs=59.0
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCC---cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
+..+..+||||+|++.|+++|. .+| +++|| ||||+|||+.++. .+.+.|..+...+.++.+..|.+.-+.
T Consensus 825 ~~~~~tLSgGEkQRl~LAraL~-----~~p~~~~llIL-DEPtsGLD~~~~~-~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 825 GQPATTLSGGEAQRVKLAKELS-----KRSTGKTLYIL-DEPTTGLHFEDIR-KLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred cCCcccCCHHHHHHHHHHHHHh-----cCCCCCeEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4567789999999999999999 888 78888 9999999999974 455788888766555555555555554
Q ss_pred ccCCcEEEE
Q 007747 576 TIDDKHYQW 584 (591)
Q Consensus 576 ~i~d~vGal 584 (591)
.+|++..+
T Consensus 898 -~aD~ii~L 905 (943)
T PRK00349 898 -TADWIIDL 905 (943)
T ss_pred -hCCEEEEe
Confidence 35655433
No 423
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.12 E-value=3.6e-10 Score=122.69 Aligned_cols=243 Identities=20% Similarity=0.251 Sum_probs=160.4
Q ss_pred CccCChhchHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHH-----H-
Q 007747 327 KANLDKADLEPALKALKDRLMTKNVA-------EEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR-----I- 393 (591)
Q Consensus 327 ~~~l~~~dl~~~l~~i~~~Ll~~~V~-------~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~-----i- 393 (591)
...||...++..+.-++ +|.+.|-. ..=+.++|+++.-.-.|+.++++.+..+.-.+.|.+-+.. -
T Consensus 168 TaVLTP~E~~~lf~~l~-~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v~~~~ 246 (501)
T COG3845 168 TAVLTPQEADELFEILR-RLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVLRV 246 (501)
T ss_pred cccCCHHHHHHHHHHHH-HHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCCcccccc
Confidence 34778888888888777 58888875 2334566766643334665555543322212222221111 0
Q ss_pred ----cCCC--------------CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-c
Q 007747 394 ----LTPR--------------RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-F 454 (591)
Q Consensus 394 ----l~~~--------------~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-~ 454 (591)
.+|. ...+.+++|||++..|+ |++|.|..|-|-+.|+..|+|+.++..|+|.+.|+|. -
T Consensus 247 ~~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GE--IvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~ 324 (501)
T COG3845 247 VKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGE--IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324 (501)
T ss_pred ccCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCc--EEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccc
Confidence 0011 12356899999999999 9999999999999999999999988889999999995 1
Q ss_pred ----------eeeeecchhh---------hhhhcccc------eeecCCCCCHH---HHHHHHHHHhhhc--CCCcchhc
Q 007747 455 ----------RSGAVEQLRT---------HARRLQVP------IFEKGYEKDPA---IVAKEAIQEATRN--GSDVVLVD 504 (591)
Q Consensus 455 ----------RigaveQl~~---------~~~~l~v~------l~~~~~~~d~~---~~a~~al~~~~~~--~~d~vliD 504 (591)
-+|+|+..+. +++|+-+. ++..+ --+.. ..+.+.++.+... +.+...-.
T Consensus 325 ~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g-~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~ 403 (501)
T COG3845 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGG-FLDRRAIRKFARELIEEFDVRAPSPDAPARS 403 (501)
T ss_pred cCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccccccccc-ccCHHHHHHHHHHHHHHcCccCCCCCcchhh
Confidence 2778887662 23333221 22211 12222 2233344433322 22355677
Q ss_pred cchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc---CCcE
Q 007747 505 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI---DDKH 581 (591)
Q Consensus 505 tSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i---~d~v 581 (591)
+|||++|++-++|+|. .+|+++++ ..||-|+|.-.. ..+++.|.+.++.++.+. +|-+.+|++ +|++
T Consensus 404 LSGGNqQK~IlaREl~-----~~p~lLI~-~qPTrGLDvgA~-~~I~~~l~e~r~~G~AVL---LiS~dLDEil~lsDrI 473 (501)
T COG3845 404 LSGGNQQKLILARELA-----RRPDLLIA-AQPTRGLDVGAI-EFIHERLLELRDAGKAVL---LISEDLDEILELSDRI 473 (501)
T ss_pred cCCcceehhhhhhhhc-----cCCCEEEE-cCCCccccHHHH-HHHHHHHHHHHhcCCEEE---EEehhHHHHHHhhhee
Confidence 8999999999999999 99999999 999999998875 566788888888776655 566667664 4544
Q ss_pred EE
Q 007747 582 YQ 583 (591)
Q Consensus 582 Ga 583 (591)
.+
T Consensus 474 aV 475 (501)
T COG3845 474 AV 475 (501)
T ss_pred ee
Confidence 33
No 424
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.11 E-value=3.3e-10 Score=107.91 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=73.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~ 495 (591)
.+++|+||||+||||+++.|+..+-...+.+.. ..+. +.|. .++......
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~-~~g~-----------~~~~~~~~~----------------- 71 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV-KAGC-----------IVAAVSAEL----------------- 71 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc-cCCC-----------cceeeEEEE-----------------
Confidence 499999999999999999998777655444333 1111 1110 011000000
Q ss_pred cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 496 ~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
-...+.+|+|++++..++++|... ...+|+++|+ |||+.|+|+.+.... .+.+.++... +.+.+++|.
T Consensus 72 ---i~~~~~lS~G~~~~~~la~~L~~~-~~~~~~llll-DEp~~gld~~~~~~l-~~~l~~~~~~----~~~vii~TH 139 (162)
T cd03227 72 ---IFTRLQLSGGEKELSALALILALA-SLKPRPLYIL-DEIDRGLDPRDGQAL-AEAILEHLVK----GAQVIVITH 139 (162)
T ss_pred ---ehheeeccccHHHHHHHHHHHHhc-CCCCCCEEEE-eCCCCCCCHHHHHHH-HHHHHHHHhc----CCEEEEEcC
Confidence 011134899999999999999811 1127888888 999999999987544 3566555443 234445544
No 425
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=2.7e-10 Score=134.51 Aligned_cols=81 Identities=20% Similarity=0.123 Sum_probs=58.9
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccC
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~ 578 (591)
+..+..+||||+||+.|+++|.. ...+|+++|| ||||+|||+.++. .+.+.|..+...+.++.+..|.+.-+.. +
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~--~~~~p~llIL-DEPtsgLD~~~~~-~L~~~L~~l~~~G~TVIvi~H~~~~i~~-a 897 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSK--RSTGRTLYIL-DEPTTGLHFDDIK-KLLEVLQRLVDQGNTVVVIEHNLDVIKT-A 897 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhh--cCCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhCCCEEEEEeCCHHHHHh-C
Confidence 45567889999999999999981 0015889888 9999999999974 4557888887665555555555555543 5
Q ss_pred CcEEEE
Q 007747 579 DKHYQW 584 (591)
Q Consensus 579 d~vGal 584 (591)
|++..|
T Consensus 898 D~ii~L 903 (924)
T TIGR00630 898 DYIIDL 903 (924)
T ss_pred CEEEEe
Confidence 655444
No 426
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.10 E-value=1.8e-10 Score=113.33 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=73.2
Q ss_pred cccccCCceEEEEEccCCCcHHHHHHHHHhh-hhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHH
Q 007747 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 486 (591)
Q Consensus 408 ~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~-l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a 486 (591)
+.+..|+ +++|+||||+||||+|+.|++. +....|... -+...++++..|+..+.. ..+
T Consensus 24 ~~l~~~~--~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~--~~~~~~i~~~dqi~~~~~-----------~~d----- 83 (202)
T cd03243 24 INLGSGR--LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV--PAESASIPLVDRIFTRIG-----------AED----- 83 (202)
T ss_pred EEEcCCe--EEEEECCCCCccHHHHHHHHHHHHHHHcCCCc--cccccccCCcCEEEEEec-----------Ccc-----
Confidence 3344677 9999999999999999999954 333333211 112233444333221110 000
Q ss_pred HHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccc
Q 007747 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 566 (591)
Q Consensus 487 ~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~i 566 (591)
.....+..+++++++ +..+.++. .+|+++|+ |||++|+|+..+.......+..+... ..
T Consensus 84 ----------~i~~~~s~~~~e~~~-l~~i~~~~-----~~~~llll-DEp~~gld~~~~~~l~~~ll~~l~~~----~~ 142 (202)
T cd03243 84 ----------SISDGRSTFMAELLE-LKEILSLA-----TPRSLVLI-DELGRGTSTAEGLAIAYAVLEHLLEK----GC 142 (202)
T ss_pred ----------cccCCceeHHHHHHH-HHHHHHhc-----cCCeEEEE-ecCCCCCCHHHHHHHHHHHHHHHHhc----CC
Confidence 011112233555554 44444445 68999999 99999999988754444445555543 34
Q ss_pred eEEEecccccc
Q 007747 567 DGILLTKFDTI 577 (591)
Q Consensus 567 t~IIlTK~D~i 577 (591)
+.+++|....+
T Consensus 143 ~vi~~tH~~~~ 153 (202)
T cd03243 143 RTLFATHFHEL 153 (202)
T ss_pred eEEEECChHHH
Confidence 55666655443
No 427
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.08 E-value=1.2e-09 Score=120.13 Aligned_cols=145 Identities=11% Similarity=0.078 Sum_probs=99.0
Q ss_pred HcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc-cceeeeecchhhh-----h
Q 007747 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-TFRSGAVEQLRTH-----A 466 (591)
Q Consensus 393 il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D-t~RigaveQl~~~-----~ 466 (591)
+.+|.....++++++|.+++|. .+.|+||||+|||+|++.|+|+-+..+|++..-+.- +..+=+++|-+.+ -
T Consensus 441 l~tPt~g~~lie~Ls~~V~~g~--~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLR 518 (659)
T KOG0060|consen 441 LSTPTNGDLLIENLSLEVPSGQ--NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLR 518 (659)
T ss_pred ecCCCCCceeeeeeeeEecCCC--eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchh
Confidence 3456655567788999999999 999999999999999999999999899988764322 1124478886533 3
Q ss_pred hhcccceee---cCCCCCHHHHHHHHHHHhhh-------cCCC----cchhc-cchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 467 RRLQVPIFE---KGYEKDPAIVAKEAIQEATR-------NGSD----VVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 467 ~~l~v~l~~---~~~~~d~~~~a~~al~~~~~-------~~~d----~vliD-tSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
+.+-.|+-. ...+.+. ..+.+.++.+++ .+.| .--.| +|+|++||+++||.+. ++|.+.
T Consensus 519 dQvIYP~~~~~~~~~~~~d-~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy-----~kPk~A 592 (659)
T KOG0060|consen 519 DQVIYPLKAEDMDSKSASD-EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY-----HKPKFA 592 (659)
T ss_pred heeeccCccccccccCCCH-HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh-----cCCceE
Confidence 333223211 1111222 223334443332 2333 22233 5999999999999999 999999
Q ss_pred EEEecccCCCCHHHH
Q 007747 532 LFVGEALVGNDAVDQ 546 (591)
Q Consensus 532 LLVDEPt~GlD~~~q 546 (591)
+| ||.|++++..-.
T Consensus 593 iL-DE~TSAv~~dvE 606 (659)
T KOG0060|consen 593 IL-DECTSAVTEDVE 606 (659)
T ss_pred Ee-echhhhccHHHH
Confidence 99 999999986543
No 428
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.06 E-value=5.5e-10 Score=111.39 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=42.4
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
+..+.++||||+|+..++.+|+ .....+|+++|+ |||++|+|+..+.. +.+.|..+..
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la-~~~~~~p~llll-DEP~~~LD~~~~~~-i~~~l~~~~~ 178 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLS-LQELTRCPFRVV-DEINQGMDPTNERK-VFDMLVETAC 178 (213)
T ss_pred ccchhhccccHHHHHHHHHHHH-HHhccCCCEEEE-ecccccCCHHHHHH-HHHHHHHHhh
Confidence 4567789999999877665443 111268999998 99999999998754 4466666654
No 429
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.01 E-value=2.7e-09 Score=111.75 Aligned_cols=154 Identities=23% Similarity=0.225 Sum_probs=98.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce---eeeecchhhhh----hhcccce
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVEQLRTHA----RRLQVPI 473 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R---igaveQl~~~~----~~l~v~l 473 (591)
.+|+++++....+. +++|+|++|+||||++..|+..+...+.+|.+.+.|... .|++...+... ..-++.+
T Consensus 22 ~~~~~~~~~~~~~~--~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (300)
T TIGR00750 22 QLLDRIMPYTGNAH--RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFI 99 (300)
T ss_pred HHHHhCCcccCCce--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCcee
Confidence 45666766655555 999999999999999999999998889999999999743 23332222111 1112211
Q ss_pred eec---CCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHH
Q 007747 474 FEK---GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 474 ~~~---~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
... +.-........+++..+...++|++++||+|..+....+ . ...|.+++|.-|.++.|....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i----~-----~~aD~i~vv~~~~~~~el~~~---- 166 (300)
T TIGR00750 100 RSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSEVDI----A-----NMADTFVVVTIPGTGDDLQGI---- 166 (300)
T ss_pred eecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHH----H-----HhhceEEEEecCCccHHHHHH----
Confidence 111 111223344566777777789999999999987665543 2 346777776667776554322
Q ss_pred HHHHHHhhcCCCCccceEEEecccccc
Q 007747 551 NQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
...+. . ....++++|+|..
T Consensus 167 ~~~l~---~-----~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 167 KAGLM---E-----IADIYVVNKADGE 185 (300)
T ss_pred HHHHh---h-----hccEEEEEccccc
Confidence 12221 1 2346999999985
No 430
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.00 E-value=1.2e-09 Score=115.66 Aligned_cols=145 Identities=24% Similarity=0.282 Sum_probs=99.5
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---ceeeeecchhhhhhhc----ccc---eeecCCCCC
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---FRSGAVEQLRTHARRL----QVP---IFEKGYEKD 481 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---~RigaveQl~~~~~~l----~v~---l~~~~~~~d 481 (591)
.|.|++++|+|++||||||++..|...+...+.+|.+.+.|. +.-|++-..+...+.+ ++- ....++...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 356789999999999999999999999988888999999998 3234443332222211 111 111233334
Q ss_pred HHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC
Q 007747 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 482 ~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~ 561 (591)
.+..+.+++..+...++|++++||+|..+....+ . ...|++++|..|-.|.|..... .-+.+
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i----~-----~~aD~vlvv~~p~~gd~iq~~k----~gi~E----- 194 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETAV----A-----GMVDFFLLLQLPGAGDELQGIK----KGIME----- 194 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhHH----H-----HhCCEEEEEecCCchHHHHHHH----hhhhh-----
Confidence 5667778888888889999999999988655542 2 3568988877787877654421 10111
Q ss_pred CCccceEEEecccccc
Q 007747 562 NPQLIDGILLTKFDTI 577 (591)
Q Consensus 562 ~~~~it~IIlTK~D~i 577 (591)
..+.+++||.|.+
T Consensus 195 ---~aDIiVVNKaDl~ 207 (332)
T PRK09435 195 ---LADLIVINKADGD 207 (332)
T ss_pred ---hhheEEeehhccc
Confidence 2357999999975
No 431
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.1e-09 Score=119.15 Aligned_cols=133 Identities=20% Similarity=0.165 Sum_probs=95.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcc---cceeecCCCCCHHHHHHHHHHHh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ---VPIFEKGYEKDPAIVAKEAIQEA 493 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~---v~l~~~~~~~d~~~~a~~al~~~ 493 (591)
.++++|+||+||||+++++.+-+.|..|-+.+.+. .|+++..|...-.-.++ +.+....+...+.+.+.+.+..+
T Consensus 392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r--~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~ 469 (582)
T KOG0062|consen 392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR--LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSF 469 (582)
T ss_pred hhheeccCchhHHHHHHHHhccCCcccceeeeccc--ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 58999999999999999999999988887777653 57999888543211111 22333333333444455555555
Q ss_pred hhcCC--CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhh
Q 007747 494 TRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 494 ~~~~~--d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
++.+- ...+..+||||+-|+.+|.... ++|.+++| ||||+.||... +..+-++|+.+.
T Consensus 470 Gl~g~la~~si~~LSGGQKsrvafA~~~~-----~~PhlLVL-DEPTNhLD~ds-l~AL~~Al~~F~ 529 (582)
T KOG0062|consen 470 GLSGELALQSIASLSGGQKSRVAFAACTW-----NNPHLLVL-DEPTNHLDRDS-LGALAKALKNFN 529 (582)
T ss_pred CCCchhhhccccccCCcchhHHHHHHHhc-----CCCcEEEe-cCCCccccHHH-HHHHHHHHHhcC
Confidence 55432 2445678999999999999998 99999999 99999999866 455556666553
No 432
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.97 E-value=1.2e-09 Score=116.31 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=108.2
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh--------hcCCcEEEEccccc--ceeeeecchhhhhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--------LQHKVSVMMAACDT--FRSGAVEQLRTHARR 468 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--------~~~~G~V~i~~~Dt--~RigaveQl~~~~~~ 468 (591)
...+|+|+|+.+++|+ +++++|++|+||||+|++|+|.. +|++|.|.+-..-. .+.|-++- .+.
T Consensus 395 eryvlr~vNL~ikpGd--vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep--~f~-- 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGD--VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEP--EFG-- 468 (593)
T ss_pred eeeeeeceeeEecCCC--eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCccccc--ccC--
Confidence 3458999999999999 99999999999999999999854 57788877643211 12221111 111
Q ss_pred cccceeecC--CCCCHHHHHHHHHHHhhhcC---CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 469 LQVPIFEKG--YEKDPAIVAKEAIQEATRNG---SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 469 l~v~l~~~~--~~~d~~~~a~~al~~~~~~~---~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
++.+.... ...| ...+.+.+..+.+.+ +...+-++|.|++.|..||+.|+ ..|.+++. ||..+.||.
T Consensus 469 -~~tilehl~s~tGD-~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla-----erpn~~~i-DEF~AhLD~ 540 (593)
T COG2401 469 -EVTILEHLRSKTGD-LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA-----ERPNVLLI-DEFAAHLDE 540 (593)
T ss_pred -chhHHHHHhhccCc-hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh-----cCCCcEEh-hhhhhhcCH
Confidence 11111110 1112 223445555555443 24678899999999999999999 89999988 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
....+ ....+..++ +..+++.+++|.=-++
T Consensus 541 ~TA~r-VArkisela---Re~giTlivvThrpEv 570 (593)
T COG2401 541 LTAVR-VARKISELA---REAGITLIVVTHRPEV 570 (593)
T ss_pred HHHHH-HHHHHHHHH---HHhCCeEEEEecCHHH
Confidence 88643 223444444 3468899999865443
No 433
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.94 E-value=8.2e-10 Score=110.86 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=71.1
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceee-eecchhhhhhhcccceeecCCC
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG-AVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Rig-aveQl~~~~~~l~v~l~~~~~~ 479 (591)
.+..++++....++ +++|.||||+||||+++.|+-... ...+| +|+. ....++.+
T Consensus 18 ~v~~~~~~~~~~~~--~~~l~G~n~~GKstll~~i~~~~~------------la~~g~~vpa-----~~~~~~~~----- 73 (222)
T cd03285 18 FIPNDVTLTRGKSR--FLIITGPNMGGKSTYIRQIGVIVL------------MAQIGCFVPC-----DSADIPIV----- 73 (222)
T ss_pred eEEeeEEEeecCCe--EEEEECCCCCChHHHHHHHHHHHH------------HHHhCCCcCc-----ccEEEecc-----
Confidence 46788999887777 999999999999999999983211 01111 1111 11111111
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc---cCCCCHHHHH
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA---LVGNDAVDQL 547 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP---t~GlD~~~q~ 547 (591)
.+++..+... +....++|.+|+++..+++++..+ .+|+++|+ ||| |+++|+....
T Consensus 74 -------~~il~~~~l~--d~~~~~lS~~~~e~~~~a~il~~~---~~~sLvLL-DEp~~gT~~lD~~~~~ 131 (222)
T cd03285 74 -------DCILARVGAS--DSQLKGVSTFMAEMLETAAILKSA---TENSLIII-DELGRGTSTYDGFGLA 131 (222)
T ss_pred -------ceeEeeeccc--cchhcCcChHHHHHHHHHHHHHhC---CCCeEEEE-ecCcCCCChHHHHHHH
Confidence 1111111111 233567899999999999988421 78888888 999 8889988764
No 434
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.93 E-value=1.8e-09 Score=107.02 Aligned_cols=137 Identities=23% Similarity=0.299 Sum_probs=82.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
..+..++++....|+ +++|+||||+||||+++.|+++..-.. .|+ | ++ +....++++..
T Consensus 16 ~~v~~~~~~~~~~~~--~~~l~G~n~~GKstll~~i~~~~~la~-----~G~--~----vp-----a~~~~l~~~d~--- 74 (204)
T cd03282 16 NFIPNDIYLTRGSSR--FHIITGPNMSGKSTYLKQIALLAIMAQ-----IGC--F----VP-----AEYATLPIFNR--- 74 (204)
T ss_pred cEEEeeeEEeeCCCc--EEEEECCCCCCHHHHHHHHHHHHHHHH-----cCC--C----cc-----hhhcCccChhh---
Confidence 357789999998888 999999999999999999998752110 011 0 00 01111111110
Q ss_pred CCHHHHHHHHHHHhhhc-CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhh
Q 007747 480 KDPAIVAKEAIQEATRN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~-~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
.+..+... ......-..+++|++.. .+..++ .+|+++|+ |||+.|+|+.+.......++..+.
T Consensus 75 ---------I~~~~~~~d~~~~~~S~fs~e~~~~~-~il~~~-----~~~~lvll-DE~~~gt~~~~~~~l~~~il~~l~ 138 (204)
T cd03282 75 ---------LLSRLSNDDSMERNLSTFASEMSETA-YILDYA-----DGDSLVLI-DELGRGTSSADGFAISLAILECLI 138 (204)
T ss_pred ---------eeEecCCccccchhhhHHHHHHHHHH-HHHHhc-----CCCcEEEe-ccccCCCCHHHHHHHHHHHHHHHH
Confidence 00011111 11223344577777543 333345 68888888 999999999887665556677776
Q ss_pred cCCCCccceEEEecccccc
Q 007747 559 SSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 559 ~~~~~~~it~IIlTK~D~i 577 (591)
.. +.+.++.|....+
T Consensus 139 ~~----~~~~i~~TH~~~l 153 (204)
T cd03282 139 KK----ESTVFFATHFRDI 153 (204)
T ss_pred hc----CCEEEEECChHHH
Confidence 55 3455556654443
No 435
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.92 E-value=3.2e-09 Score=115.68 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=96.6
Q ss_pred HcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhh-----h
Q 007747 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----R 467 (591)
Q Consensus 393 il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~-----~ 467 (591)
+++|...+ ++..++|.+.+|- -+.|+||||||||++.++|+|+.+-.+|...+-.. -++=|++|-+.+. +
T Consensus 489 vItP~~~v-vv~~Ltf~i~~G~--hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~--~~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 489 VITPAGDV-LVPKLTFQIEPGM--HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP--NNIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred eeccCcce-eecceeEEecCCc--eEEEECCCCccHHHHHHHHhccCcccCCeeecCCC--cceEeccCCCccCcCcccc
Confidence 34555544 5678999999998 89999999999999999999998877776555332 2477888866442 1
Q ss_pred hc-----ccceeecCCCCCHHHHHHHHH--HH-hhhc-CCCcc--hhc-cchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 468 RL-----QVPIFEKGYEKDPAIVAKEAI--QE-ATRN-GSDVV--LVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 468 ~l-----~v~l~~~~~~~d~~~~a~~al--~~-~~~~-~~d~v--liD-tSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
.+ -..++.+++...+...+-..+ ++ ++.. +.|.+ -.| +|||++||..+||.+- +.|...+| |
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y-----HrPkyalL-D 637 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY-----HRPKYALL-D 637 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh-----cCcchhhh-h
Confidence 11 112344455433322222211 11 1222 23322 122 6999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHH
Q 007747 536 EALVGNDAVDQLSKF 550 (591)
Q Consensus 536 EPt~GlD~~~q~~~f 550 (591)
|.|++..+.-.-..|
T Consensus 638 EcTsAvsidvE~~i~ 652 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIF 652 (728)
T ss_pred hhhcccccchHHHHH
Confidence 999887654433445
No 436
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.92 E-value=1.3e-08 Score=101.53 Aligned_cols=115 Identities=24% Similarity=0.245 Sum_probs=73.0
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHh--hhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCH
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDP 482 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg--~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~ 482 (591)
|+.+. .+.+++++|+||||+||||+|+.|+. ++ ...|.+.. ++..+++++.|+.+... - .
T Consensus 21 d~~l~--~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~--a~~~~~~~~d~i~~~l~---~--------~-- 82 (213)
T cd03281 21 DTEIG--GGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP--ADSATIGLVDKIFTRMS---S--------R-- 82 (213)
T ss_pred eEEec--CCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE--cCCcEEeeeeeeeeeeC---C--------c--
Confidence 44443 34335999999999999999999994 44 44454443 23466777776532110 0 0
Q ss_pred HHHHHHHHHHhhhcCCCcchhc--cchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 483 AIVAKEAIQEATRNGSDVVLVD--TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 483 ~~~a~~al~~~~~~~~d~vliD--tSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
+.+... +--..-+++.+++.++ .+|.++|+ |||+.|+|+.+....+...+..+..
T Consensus 83 ----------------~si~~~~S~f~~el~~l~~~l~~~-----~~~slvll-DE~~~gtd~~~~~~~~~ail~~l~~ 139 (213)
T cd03281 83 ----------------ESVSSGQSAFMIDLYQVSKALRLA-----TRRSLVLI-DEFGKGTDTEDGAGLLIATIEHLLK 139 (213)
T ss_pred ----------------cChhhccchHHHHHHHHHHHHHhC-----CCCcEEEe-ccccCCCCHHHHHHHHHHHHHHHHh
Confidence 001111 2223345666677776 78888888 9999999998765566567777754
No 437
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.87 E-value=4.5e-09 Score=102.29 Aligned_cols=108 Identities=21% Similarity=0.205 Sum_probs=66.4
Q ss_pred EEEEEccCCCcHHHHHHHHH-hhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVA-YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLA-g~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~ 495 (591)
+++|.||||+||||+++.|+ ..+....|.... ++.++++++.++... ++..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~--a~~~~~~~~d~il~~---~~~~----------------------- 52 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVP--AESAELPVFDRIFTR---IGAS----------------------- 52 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCee--ehheEecccceEEEE---eCCC-----------------------
Confidence 36799999999999999999 444444443222 233555555443211 0100
Q ss_pred cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 496 ~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
...+..+-.+++++++ +++++.. ..+|+++|+ |||+.|+|+.+....+...+..+..
T Consensus 53 d~~~~~~s~fs~~~~~---l~~~l~~---~~~~~llll-DEp~~g~d~~~~~~~~~~~l~~l~~ 109 (185)
T smart00534 53 DSLAQGLSTFMVEMKE---TANILKN---ATENSLVLL-DELGRGTSTYDGVAIAAAVLEYLLE 109 (185)
T ss_pred CchhccccHHHHHHHH---HHHHHHh---CCCCeEEEE-ecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0112223455667765 4444441 148998888 9999999999876656566666654
No 438
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=1.3e-08 Score=105.32 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=40.1
Q ss_pred ccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 504 DtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
.+|||+++++.+++++... ...+|+++|+ |||++++|+..+. .+.+.|..+..
T Consensus 170 ~lS~G~~~r~~la~~~~~~-~~~~p~vlll-DEp~~~Ld~~~~~-~l~~~l~~~~~ 222 (276)
T cd03241 170 IASGGELSRLMLALKAILA-RKDAVPTLIF-DEIDTGISGEVAQ-AVGKKLKELSR 222 (276)
T ss_pred hcChhHHHHHHHHHHHHHh-cCCCCCEEEE-ECCccCCCHHHHH-HHHHHHHHHhC
Confidence 3799999999999876511 0128999999 9999999999874 44466766643
No 439
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.84 E-value=2e-08 Score=94.76 Aligned_cols=138 Identities=24% Similarity=0.230 Sum_probs=83.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---eeeeecchhhhhhh----cccceeecC---CCCCHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---RSGAVEQLRTHARR----LQVPIFEKG---YEKDPAIVA 486 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---RigaveQl~~~~~~----l~v~l~~~~---~~~d~~~~a 486 (591)
+++++|++|+||||++..++.++.+.+++|.+..+|.. +.+.+...+...+. -++.+.... .........
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 37899999999999999999999999999999999972 22322221111111 111111111 111222334
Q ss_pred HHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccc
Q 007747 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 566 (591)
Q Consensus 487 ~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~i 566 (591)
.++++.++..++|++++||+|..+.... .+ ...|.+++|--|. -.|.+... +.. ....-
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~~~---~~------~~Ad~~ivv~tpe-~~D~y~~~----k~~-------~~~~~ 139 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEVD---IA------SMADTTVVVMAPG-AGDDIQAI----KAG-------IMEIA 139 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhhhh---HH------HhCCEEEEEECCC-chhHHHHh----hhh-------Hhhhc
Confidence 5566666667899999999887654432 22 3557777766666 33444321 110 12356
Q ss_pred eEEEecccc
Q 007747 567 DGILLTKFD 575 (591)
Q Consensus 567 t~IIlTK~D 575 (591)
+.++++|+|
T Consensus 140 ~~~~~~k~~ 148 (148)
T cd03114 140 DIVVVNKAD 148 (148)
T ss_pred CEEEEeCCC
Confidence 779999987
No 440
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.82 E-value=1.4e-08 Score=100.42 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhchhcCCCcEEEEEeccc-----CCCCHHHHHHHHHHHHHHhhc
Q 007747 509 MQDNEPLMRALSKLIYLNNPDLVLFVGEAL-----VGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 509 ~~qr~~LaraL~kl~~~~~PdlILLVDEPt-----~GlD~~~q~~~f~~~L~~l~~ 559 (591)
+++...|++++. .+|+++++ |||| +|||+.... .+.+.+..+..
T Consensus 157 ~~~f~~ia~~l~-----~~p~~~~l-dEp~~~~~~~~ld~~~~~-~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLT-----NDPNLVFV-GAPALAPEEIQIDPELVA-QAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHh-----hcccceec-CCcccCCCccccCHHHHH-HHHHHHHHHhh
Confidence 677789999999 89999999 9999 999999874 44466666643
No 441
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.2e-09 Score=116.52 Aligned_cols=169 Identities=18% Similarity=0.160 Sum_probs=99.0
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHh--hhhcCCcEEEEccccc----------------ceeeeec
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSVMMAACDT----------------FRSGAVE 460 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg--~l~~~~G~V~i~~~Dt----------------~Rigave 460 (591)
...++.+.++.+-.|+ .++||||||-||||||+.|+. +..|-.-.|+++-..+ .|...++
T Consensus 276 Gk~LFvnA~L~Iv~GR--RYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLe 353 (807)
T KOG0066|consen 276 GKLLFVNASLTIVYGR--RYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLE 353 (807)
T ss_pred cceeeeccceEEEecc--eecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHH
Confidence 3456678888888999 999999999999999999995 4456566676654332 2322222
Q ss_pred chh-----------hhhhhccccee-ecCCCCCH-HHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhc
Q 007747 461 QLR-----------THARRLQVPIF-EKGYEKDP-AIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYL 525 (591)
Q Consensus 461 Ql~-----------~~~~~l~v~l~-~~~~~~d~-~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~ 525 (591)
... +.+++|.-.+- .+..+.+. ...+.+++.-++... -+..--+.|||-+.|+.|||+|-
T Consensus 354 ee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALf----- 428 (807)
T KOG0066|consen 354 EEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALF----- 428 (807)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHh-----
Confidence 211 11222210000 01112221 123334433222211 13556678999999999999999
Q ss_pred CCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCC
Q 007747 526 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDD 579 (591)
Q Consensus 526 ~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d 579 (591)
..|.++.| ||||+.||..... -++..|.-+ .++..|-+|--.-+|.+|.
T Consensus 429 lEPTLLML-DEPTNHLDLNAVI-WLdNYLQgW---kKTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 429 LEPTLLML-DEPTNHLDLNAVI-WLDNYLQGW---KKTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred cCceeeee-cCCccccccceee-ehhhHHhhh---hheeEEEecccchHHHHHH
Confidence 99999888 9999999975421 122223222 2344455555555666554
No 442
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.74 E-value=4.4e-08 Score=99.62 Aligned_cols=148 Identities=20% Similarity=0.125 Sum_probs=82.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhh--hhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~--l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~ 494 (591)
.+++||++|+||||+|+.|+|. +....|.|. ..+.++....+...+...+.++.. . -.+... +.+.++.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t---~~p~~i~l~~~~~~~~~~~~~~~~--~-~~~~~~-v~~~i~~~~ 100 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT---RRPLILQLINSSTEYAEFLHCKGK--K-FTDFDE-VRNEIEAET 100 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc---ccceEEEccCCCCcceEEEecCCc--c-cCCHHH-HHHHHHHHH
Confidence 6899999999999999999997 433445433 444566666666555554443321 0 112222 222222211
Q ss_pred h------------------c---CCCcchhccchhHHH--------HHHHHHHHHhchhcCCCcEEEEEecccCCCCHHH
Q 007747 495 R------------------N---GSDVVLVDTAGRMQD--------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (591)
Q Consensus 495 ~------------------~---~~d~vliDtSGg~~q--------r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 545 (591)
. . -.+..++||+|-.+. ....++.+.+-.-....++||+|-++..++...+
T Consensus 101 ~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d 180 (240)
T smart00053 101 DRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSD 180 (240)
T ss_pred HHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchh
Confidence 1 0 146889999998631 1222333322111134458888887887776544
Q ss_pred HHHHHHHHHHHhhcCCCCccceEEEeccccccC
Q 007747 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (591)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~ 578 (591)
.. +..+.+... ..-+..|+||+|.+.
T Consensus 181 ~l----~ia~~ld~~---~~rti~ViTK~D~~~ 206 (240)
T smart00053 181 AL----KLAKEVDPQ---GERTIGVITKLDLMD 206 (240)
T ss_pred HH----HHHHHHHHc---CCcEEEEEECCCCCC
Confidence 22 222333322 234567999999973
No 443
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.74 E-value=5e-08 Score=97.57 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=29.5
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+..++++.... + +++|+||||+||||+|+.|++..
T Consensus 20 v~n~~~l~~~~-~--~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-Q--ILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-e--EEEEECCCCCChHHHHHHHHHHH
Confidence 56788887654 4 99999999999999999998744
No 444
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.73 E-value=9e-08 Score=96.26 Aligned_cols=136 Identities=19% Similarity=0.172 Sum_probs=82.8
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHh-hhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg-~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
.+..++++.+..|+ +++|+||||+||||+++.|++ .+.+..|..... ...+++++.|+.+...
T Consensus 19 ~v~n~i~~~~~~g~--~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a--~~~~~~~~~~i~~~~~------------ 82 (222)
T cd03287 19 FVPNDIHLSAEGGY--CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA--SSATLSIFDSVLTRMG------------ 82 (222)
T ss_pred EEEEeEEEEecCCc--EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc--CceEEeccceEEEEec------------
Confidence 46788999988898 999999999999999999998 666777765443 3355666555422110
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
..|....+.|.-+..-..+...|. ...++.++|+ |||..|.++.+.......++..+.+
T Consensus 83 -----------------~~d~~~~~~StF~~e~~~~~~il~---~~~~~sLvll-DE~~~gT~~~d~~~i~~~il~~l~~ 141 (222)
T cd03287 83 -----------------ASDSIQHGMSTFMVELSETSHILS---NCTSRSLVIL-DELGRGTSTHDGIAIAYATLHYLLE 141 (222)
T ss_pred -----------------CccccccccchHHHHHHHHHHHHH---hCCCCeEEEE-ccCCCCCChhhHHHHHHHHHHHHHh
Confidence 001111223332322222222222 1256777877 9999999887765545566666665
Q ss_pred CCCCccceEEEeccccc
Q 007747 560 SPNPQLIDGILLTKFDT 576 (591)
Q Consensus 560 ~~~~~~it~IIlTK~D~ 576 (591)
. ...+.++.|..-+
T Consensus 142 ~---~~~~~i~~TH~~~ 155 (222)
T cd03287 142 E---KKCLVLFVTHYPS 155 (222)
T ss_pred c---cCCeEEEEcccHH
Confidence 4 1334455555433
No 445
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.69 E-value=2.1e-08 Score=117.04 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=78.3
Q ss_pred cccccccCCceEEEEEccCCCcHHHHHHHHHhh-hhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHH
Q 007747 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI 484 (591)
Q Consensus 406 is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~-l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~ 484 (591)
+++.+..+ ..+++|+||||+||||+|+.|++. +.+..|-. +-+....+++++.|.. .. .+ +...
T Consensus 314 ~di~l~~~-~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~-Vpa~~~~~~~~~d~i~-----------~~-i~-~~~s 378 (771)
T TIGR01069 314 FTLNLKFE-KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIP-IPANEHSEIPYFEEIF-----------AD-IG-DEQS 378 (771)
T ss_pred ceeEeCCC-ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCC-ccCCccccccchhhee-----------ee-cC-hHhH
Confidence 45555555 139999999999999999999987 45544411 1111111233322211 00 00 0100
Q ss_pred HHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCc
Q 007747 485 VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564 (591)
Q Consensus 485 ~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~ 564 (591)
....+-.+|++|++...+++.+ .+|.++|| |||++|+|+.+.......++..+...
T Consensus 379 -------------i~~~LStfS~~m~~~~~il~~~------~~~sLvLl-DE~g~GtD~~eg~ala~aiLe~l~~~---- 434 (771)
T TIGR01069 379 -------------IEQNLSTFSGHMKNISAILSKT------TENSLVLF-DELGAGTDPDEGSALAISILEYLLKQ---- 434 (771)
T ss_pred -------------HhhhhhHHHHHHHHHHHHHHhc------CCCcEEEe-cCCCCCCCHHHHHHHHHHHHHHHHhc----
Confidence 1112445688898766655443 47888888 99999999999765545566666543
Q ss_pred cceEEEeccccc
Q 007747 565 LIDGILLTKFDT 576 (591)
Q Consensus 565 ~it~IIlTK~D~ 576 (591)
+...++.|.+..
T Consensus 435 g~~viitTH~~e 446 (771)
T TIGR01069 435 NAQVLITTHYKE 446 (771)
T ss_pred CCEEEEECChHH
Confidence 345566666544
No 446
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=4.3e-08 Score=116.72 Aligned_cols=154 Identities=17% Similarity=0.230 Sum_probs=109.1
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc---CCcEEEEcccccc------eeeeecchhhhhhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ---HKVSVMMAACDTF------RSGAVEQLRTHARR 468 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~---~~G~V~i~~~Dt~------RigaveQl~~~~~~ 468 (591)
....+|++++.-+++|+ .+.++||.|+||||+|+.|+|-+.. ..|+|..+|.|.- -++|..|.-.|...
T Consensus 126 ~~~~il~~~sg~~~pg~--m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGE--MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE 203 (1391)
T ss_pred ccceeecCcceeEcCCc--eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce
Confidence 34579999999999999 9999999999999999999986543 2458999998762 37888887777666
Q ss_pred cccc----eeec--C----CC-CCHHH----HHHHHHHHhhhcCC-Ccc-----hhccchhHHHHHHHHHHHHhchhcCC
Q 007747 469 LQVP----IFEK--G----YE-KDPAI----VAKEAIQEATRNGS-DVV-----LVDTAGRMQDNEPLMRALSKLIYLNN 527 (591)
Q Consensus 469 l~v~----l~~~--~----~~-~d~~~----~a~~al~~~~~~~~-d~v-----liDtSGg~~qr~~LaraL~kl~~~~~ 527 (591)
|.|. +..+ + +. ....+ +...+++.+++... |.. +.-.|||+++|+.++..++ .+
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v-----~~ 278 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV-----GP 278 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee-----cC
Confidence 5332 1111 1 11 11111 33345555555432 322 3345999999999999999 77
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 528 PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
+.+.++ ||+|.|||.....+.. +.|+.+...
T Consensus 279 ~~~~~~-De~t~GLDSsTal~ii-k~lr~~a~~ 309 (1391)
T KOG0065|consen 279 ASILFW-DEITRGLDSSTAFQII-KALRQLAHI 309 (1391)
T ss_pred cceeee-ecccccccHHHHHHHH-HHHHHHHhh
Confidence 777777 9999999999876544 667666543
No 447
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.66 E-value=2e-07 Score=96.28 Aligned_cols=144 Identities=27% Similarity=0.319 Sum_probs=104.2
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---ceeeeecchhhhhhhc----ccceee---cCCCCC
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---FRSGAVEQLRTHARRL----QVPIFE---KGYEKD 481 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---~RigaveQl~~~~~~l----~v~l~~---~~~~~d 481 (591)
.|.+++++|.|+.||||||++-.|...+...+.+|.+.+.|. |--|++--.++..+.+ ++.+.. ++.-..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 577889999999999999999999999988899999999997 4566776666555544 232222 233333
Q ss_pred HHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC
Q 007747 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 482 ~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~ 561 (591)
-.....+++..+...+||++++.|.|--|-.+.++. -.|.+++|-=|-.|-|... ++.-+.+
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~---------~aDt~~~v~~pg~GD~~Q~----iK~GimE----- 189 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIAN---------MADTFLVVMIPGAGDDLQG----IKAGIME----- 189 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhh---------hcceEEEEecCCCCcHHHH----HHhhhhh-----
Confidence 445567788888889999999999998888877654 3367777676777754322 2222322
Q ss_pred CCccceEEEeccccc
Q 007747 562 NPQLIDGILLTKFDT 576 (591)
Q Consensus 562 ~~~~it~IIlTK~D~ 576 (591)
.-+.++++|+|.
T Consensus 190 ---iaDi~vINKaD~ 201 (323)
T COG1703 190 ---IADIIVINKADR 201 (323)
T ss_pred ---hhheeeEeccCh
Confidence 347799999994
No 448
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.59 E-value=9.4e-08 Score=102.39 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=83.8
Q ss_pred ccccccccccCC---ceEEEEEccCCCcHHHHHHHHHhhhhcCCc-EEEE-----ccccc--ceeeeecchhh---hhhh
Q 007747 403 LRDVHAAKEQRK---PYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMM-----AACDT--FRSGAVEQLRT---HARR 468 (591)
Q Consensus 403 L~~is~~i~~Ge---p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G-~V~i-----~~~Dt--~RigaveQl~~---~~~~ 468 (591)
+.++.+.+..|+ .-+++++|.||.||||+++++||.++|+.| +|-. -..-+ -+-|.|-|+.. ...+
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay 431 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAY 431 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhh
Confidence 455666665442 238999999999999999999999999765 3322 11111 23344444321 1111
Q ss_pred cccceeecCCCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 469 LQVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 469 l~v~l~~~~~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
+ ++ ..+.+.++-+..++ +|..+..+|||+.||++++..|- ...|+.|. |||.+-||...++
T Consensus 432 ~-----------~p-qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGG-----KpAdvYli-DEpsAylDSeQRi 493 (592)
T KOG0063|consen 432 M-----------HP-QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLG-----KPADVYLI-DEPSAYLDSEQRI 493 (592)
T ss_pred c-----------CH-HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcC-----CCCceEEe-cCchhhcChHHHH
Confidence 1 11 11223333333333 37778889999999999999998 66677777 9999999998876
Q ss_pred HHH
Q 007747 548 SKF 550 (591)
Q Consensus 548 ~~f 550 (591)
..-
T Consensus 494 ~As 496 (592)
T KOG0063|consen 494 IAS 496 (592)
T ss_pred HHH
Confidence 544
No 449
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.56 E-value=1.9e-07 Score=95.17 Aligned_cols=144 Identities=22% Similarity=0.271 Sum_probs=89.9
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---ceeeeecchhhhhhhc----ccceeecCCCCC---
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---FRSGAVEQLRTHARRL----QVPIFEKGYEKD--- 481 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---~RigaveQl~~~~~~l----~v~l~~~~~~~d--- 481 (591)
.|+.++++|.||.|+|||||+..|...+...+.+|.+.+.|+ |-=|++--.++..+.+ ++.+........
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 355679999999999999999999998888888999999997 4456666555443332 444333322222
Q ss_pred HHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC
Q 007747 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 482 ~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~ 561 (591)
-.....+++..+...+||++++.|.|--|..+.++ .-.|.+++|.-|-.|-+.... +.-+.+
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~---------~~aD~~v~v~~Pg~GD~iQ~~----KaGimE----- 167 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIA---------DMADTVVLVLVPGLGDEIQAI----KAGIME----- 167 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHH---------TTSSEEEEEEESSTCCCCCTB-----TTHHH-----
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHH---------HhcCeEEEEecCCCccHHHHH----hhhhhh-----
Confidence 23456678888888999999999999666566553 345888888889998765321 111211
Q ss_pred CCccceEEEeccccc
Q 007747 562 NPQLIDGILLTKFDT 576 (591)
Q Consensus 562 ~~~~it~IIlTK~D~ 576 (591)
.-|.++++|.|.
T Consensus 168 ---iaDi~vVNKaD~ 179 (266)
T PF03308_consen 168 ---IADIFVVNKADR 179 (266)
T ss_dssp ---H-SEEEEE--SH
T ss_pred ---hccEEEEeCCCh
Confidence 357799999994
No 450
>PRK13768 GTPase; Provisional
Probab=98.49 E-value=1e-06 Score=90.21 Aligned_cols=161 Identities=24% Similarity=0.232 Sum_probs=86.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce--eeeecc--hhhh---hh---hccc-ceeecCCCCC-H
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--SGAVEQ--LRTH---AR---RLQV-PIFEKGYEKD-P 482 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R--igaveQ--l~~~---~~---~l~v-~l~~~~~~~d-~ 482 (591)
++++++.|+.||||||++..++.++...+.+|.+...|... +++.+. ++.+ .+ ..++ |-....+..+ .
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~ 81 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLL 81 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHH
Confidence 46899999999999999999999888778889998888621 011000 0000 10 1010 0000000000 0
Q ss_pred HHHHHHHHHHhhhcCCCcchhccchhHHHH--HHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 483 AIVAKEAIQEATRNGSDVVLVDTAGRMQDN--EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 483 ~~~a~~al~~~~~~~~d~vliDtSGg~~qr--~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
..........+...+.+.+++|++|.+.-- -.+.+.+.+.+....++++++|-++..+.++.+......-.+......
T Consensus 82 ~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~ 161 (253)
T PRK13768 82 LTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL 161 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc
Confidence 112233344444455689999999986521 222222332222223888888888877777665432211111110111
Q ss_pred CCCccceEEEeccccccC
Q 007747 561 PNPQLIDGILLTKFDTID 578 (591)
Q Consensus 561 ~~~~~it~IIlTK~D~i~ 578 (591)
. ..-.+++||.|.+.
T Consensus 162 ~---~~~i~v~nK~D~~~ 176 (253)
T PRK13768 162 G---LPQIPVLNKADLLS 176 (253)
T ss_pred C---CCEEEEEEhHhhcC
Confidence 1 33458999999864
No 451
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.45 E-value=1.2e-06 Score=86.91 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=42.4
Q ss_pred ccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 504 DtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
-+|||++..+.|+-.|+ +....+.+++|| ||+.++||...+. .+-..|..+... .-.||+|.-+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA-~~~~~~~p~~il-DEvd~~LD~~~~~-~l~~~l~~~~~~-----~Q~ii~Th~~~~ 201 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLA-LQRYKPSPFLIL-DEVDAALDEQNRK-RLADLLKELSKQ-----SQFIITTHNPEM 201 (220)
T ss_dssp GS-HHHHHHHHHHHHHH-HHTCS--SEEEE-ESTTTTS-HHHHH-HHHHHHHHHTTT-----SEEEEE-S-HHH
T ss_pred ccccccccccccccccc-cccccccccccc-ccccccccccccc-cccccccccccc-----cccccccccccc
Confidence 78999999999988777 445556677777 9999999999874 454677766532 334555544433
No 452
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.42 E-value=2.8e-07 Score=82.49 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=41.3
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.+|++++|.+.+|+ +++|+||+|||||||++.|+ .|.|.+.+.|+
T Consensus 3 ~aL~~vsl~i~~ge--~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 3 TSLHGVLVDVYGKV--GVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred eEEEeeEEEEcCCE--EEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 57899999999999 99999999999999999986 78899999876
No 453
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.42 E-value=1.2e-06 Score=90.57 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=35.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
+.++|+||||+||||+++.|++.+.+..|+|.+.|.++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEe
Confidence 37999999999999999999999999999999998775
No 454
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.41 E-value=1.3e-06 Score=83.77 Aligned_cols=134 Identities=15% Similarity=0.056 Sum_probs=75.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
++.|.||+|+||||+...++......+.+|.+.+.+.- .+|+...+..+++++ ... ...-...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~----~~~~~~~~~~~g~~~---------~~l----~~~g~l~ 63 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES----PEELIENAESLGWDL---------ERL----EDEGLLA 63 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC----HHHHHHHHHHcCCCh---------HHH----HhcCCeE
Confidence 36789999999999999998766566778887765531 222223333333321 100 0000011
Q ss_pred CCCcchhccchhHHH-HHHHHHHHHhchhcCCCcEEEEEecccCCCC---HHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 497 GSDVVLVDTAGRMQD-NEPLMRALSKLIYLNNPDLVLFVGEALVGND---AVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 497 ~~d~vliDtSGg~~q-r~~LaraL~kl~~~~~PdlILLVDEPt~GlD---~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
-.+.....+++++.+ +..++..+...+...+|+++++ |||++.+| .... ..+...+..+... +++.++++
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lvi-D~~~~~~~~~~~~~~-~~i~~l~~~l~~~----g~tvi~v~ 137 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVI-DSVSGLLLMEQSTAR-LEIRRLLFALKRF----GVTTLLTS 137 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEE-eCcHHHhhcChHHHH-HHHHHHHHHHHHC----CCEEEEEe
Confidence 123444455677655 2233444444444478998888 99999988 4332 3344555555544 45555555
Q ss_pred c
Q 007747 573 K 573 (591)
Q Consensus 573 K 573 (591)
.
T Consensus 138 ~ 138 (187)
T cd01124 138 E 138 (187)
T ss_pred c
Confidence 4
No 455
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=1.4e-06 Score=89.91 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=36.8
Q ss_pred cchhHHHHHHHHHHHHh--chh--cCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q 007747 505 TAGRMQDNEPLMRALSK--LIY--LNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 505 tSGg~~qr~~LaraL~k--l~~--~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~ 555 (591)
+|+|+++++.++++|+. ++. ..+|+++|| |||+++||+..+.. +.+.|.
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illl-DEp~a~LD~~~~~~-l~~~l~ 236 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLL-DDVLAELDLGRQAA-LLDAIE 236 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE-cCcchhcCHHHHHH-HHHHhh
Confidence 49999999999998853 111 258888888 99999999988743 324443
No 456
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.37 E-value=1.2e-06 Score=108.98 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=46.4
Q ss_pred cchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCcc
Q 007747 500 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565 (591)
Q Consensus 500 ~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~ 565 (591)
...-.+|||+.||+.||..|.+ ....+.+++| ||||.||++.+. ..+.+.|..+.+.++++.
T Consensus 1695 q~~~tLSGGE~qRikLa~~l~~--~~~~~~lyil-DEPt~GLh~~d~-~~Ll~~l~~L~~~g~tvi 1756 (1809)
T PRK00635 1695 QNLSSLSLSEKIAIKIAKFLYL--PPKHPTLFLL-DEIATSLDNQQK-SALLVQLRTLVSLGHSVI 1756 (1809)
T ss_pred CcCCccCchHHHHHHHHHHHhc--CCCCCcEEEE-cCCCCCCCHHHH-HHHHHHHHHHHhcCCeEE
Confidence 4455689999999999999982 1113567777 999999999996 445577888887755543
No 457
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.36 E-value=4.3e-07 Score=106.47 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=73.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh-hhcCCc-EEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW-LLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~-l~~~~G-~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~ 493 (591)
.+++|.|||++||||+|+.++.. +....| -|- +....+++++.+..+ ..+ +.
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~~maq~G~~vp--a~~~~~i~~~~~i~~----------~ig---~~----------- 381 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIP--ANEPSEIPVFKEIFA----------DIG---DE----------- 381 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcc--cCCCccccccceEEE----------ecC---Cc-----------
Confidence 38999999999999999999854 222222 111 000112222222100 000 00
Q ss_pred hhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 494 ~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
......+-.+|++|++...+++++ .+|.++|| |||+.|+|+.+.......++..+... +...++.|.
T Consensus 382 --~si~~~lStfS~~m~~~~~Il~~~------~~~sLvLl-DE~~~GtDp~eg~ala~aile~l~~~----~~~vIitTH 448 (782)
T PRK00409 382 --QSIEQSLSTFSGHMTNIVRILEKA------DKNSLVLF-DELGAGTDPDEGAALAISILEYLRKR----GAKIIATTH 448 (782)
T ss_pred --cchhhchhHHHHHHHHHHHHHHhC------CcCcEEEe-cCCCCCCCHHHHHHHHHHHHHHHHHC----CCEEEEECC
Confidence 112234566799999988888766 37888888 99999999998755544556666554 345566665
Q ss_pred ccc
Q 007747 574 FDT 576 (591)
Q Consensus 574 ~D~ 576 (591)
...
T Consensus 449 ~~e 451 (782)
T PRK00409 449 YKE 451 (782)
T ss_pred hHH
Confidence 543
No 458
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.30 E-value=4.2e-06 Score=95.93 Aligned_cols=61 Identities=21% Similarity=0.182 Sum_probs=46.7
Q ss_pred chhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCcc
Q 007747 501 VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565 (591)
Q Consensus 501 vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~ 565 (591)
..-.+|||+-||+.||.+|.+ +....-+.+| ||||+||-..+.. .+.+.|..|...++++.
T Consensus 819 patTLSGGEaQRvKLA~EL~k--~~tg~TlYiL-DEPTTGLH~~Di~-kLl~VL~rLvd~GnTVi 879 (935)
T COG0178 819 PATTLSGGEAQRVKLAKELSK--RSTGKTLYIL-DEPTTGLHFDDIK-KLLEVLHRLVDKGNTVI 879 (935)
T ss_pred ccccccchHHHHHHHHHHHhh--ccCCCeEEEe-CCCCCCCCHHHHH-HHHHHHHHHHhCCCEEE
Confidence 344579999999999999993 2234467777 9999999998864 44478888888776654
No 459
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.29 E-value=6.5e-07 Score=98.38 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=43.5
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc-EEEEcccccc
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDTF 454 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G-~V~i~~~Dt~ 454 (591)
+|++|++.+.+|+ +++||||+||||||+|+ +++..|..| +|.+.|.+.+
T Consensus 21 vL~~Vsl~i~~GE--iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 21 ILVKFNKELPSSS--LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHhCCceeecCCC--EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 4678999999999 99999999999999999 677777666 8999999885
No 460
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.26 E-value=1.7e-06 Score=94.91 Aligned_cols=108 Identities=22% Similarity=0.337 Sum_probs=73.0
Q ss_pred HHHH--HHHHHHHCCCCHHHHHHHHHHHHHHhc--CCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccc-c
Q 007747 338 ALKA--LKDRLMTKNVAEEIAEKLCESVAASLE--GKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE-Q 412 (591)
Q Consensus 338 ~l~~--i~~~Ll~~~V~~~ia~~l~~~v~~~l~--g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~-~ 412 (591)
.+.+ +.+.|+..||++++|.+|++.+++.+. |..... ...++..+.+.+.+.+.+.... -+ ++...+. .
T Consensus 179 PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~----ra~VR~~V~~~L~~~l~~~~a~-~y-~la~~i~~~ 252 (475)
T PRK12337 179 PFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVR----RDQLRRKVEALLLEEAGEEVAR-RY-RLLRSIRRP 252 (475)
T ss_pred CCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc----HHHHHHHHHHHHHhhhhhhHHH-HH-HHHHHhhcc
Confidence 3555 888999999999999999999998884 444433 3445555666555554321000 00 1100112 2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R 455 (591)
.+|.+++|+|+||+||||+..+||..+.. ..+...|+.|
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~----~~ii~tD~iR 291 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI----TRIVSTDAVR 291 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC----cEEeehhHHH
Confidence 46899999999999999999999987643 2366778755
No 461
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.25 E-value=5.5e-06 Score=76.41 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
+++|+|++|+||||++..|++...+.++.|.+...+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 3789999999999999999999988888998887764
No 462
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.24 E-value=4.8e-06 Score=83.62 Aligned_cols=133 Identities=19% Similarity=0.149 Sum_probs=74.4
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-CCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
.+-.++++...+++ +++|.||||+||||+++.++..... .-|- .+.++-++++.+.++.+. .
T Consensus 18 ~v~ndi~l~~~~~~--~~~itG~n~~gKs~~l~~i~~~~~la~~G~--~vpa~~~~i~~~~~i~~~-----------~-- 80 (218)
T cd03286 18 FVPNDVDLGATSPR--ILVLTGPNMGGKSTLLRTVCLAVIMAQMGM--DVPAKSMRLSLVDRIFTR-----------I-- 80 (218)
T ss_pred eEEeeeEEeecCCc--EEEEECCCCCchHHHHHHHHHHHHHHHcCC--ccCccccEeccccEEEEe-----------c--
Confidence 45678999888888 9999999999999999999975432 2121 111222333332221110 0
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
...|.+..+.|.-+..-..+.+.|. ...+|.++|+ |||..|.++.+........+..+..
T Consensus 81 ----------------~~~d~~~~~~StF~~e~~~~~~il~---~~~~~sLvLl-DE~~~Gt~~~dg~~la~ail~~L~~ 140 (218)
T cd03286 81 ----------------GARDDIMKGESTFMVELSETANILR---HATPDSLVIL-DELGRGTSTHDGYAIAHAVLEYLVK 140 (218)
T ss_pred ----------------CcccccccCcchHHHHHHHHHHHHH---hCCCCeEEEE-ecccCCCCchHHHHHHHHHHHHHHH
Confidence 0011111223333322222222222 1257777777 9999999999876666555666665
Q ss_pred CCCCccceEEEecc
Q 007747 560 SPNPQLIDGILLTK 573 (591)
Q Consensus 560 ~~~~~~it~IIlTK 573 (591)
. .....++.|.
T Consensus 141 ~---~~~~~i~~TH 151 (218)
T cd03286 141 K---VKCLTLFSTH 151 (218)
T ss_pred h---cCCcEEEEec
Confidence 3 1334444444
No 463
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.23 E-value=2.8e-06 Score=84.03 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=32.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
|..++|+||+||||||+++.|.+.+.+. +.+.+...|.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~ 39 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIY 39 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcC
Confidence 5689999999999999999999988775 44777777764
No 464
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=98.20 E-value=1.5e-05 Score=80.27 Aligned_cols=131 Identities=23% Similarity=0.296 Sum_probs=88.4
Q ss_pred CCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhc--------ccceeecCCCCCHHHHHHHHHHHhhh
Q 007747 424 NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--------QVPIFEKGYEKDPAIVAKEAIQEATR 495 (591)
Q Consensus 424 NGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l--------~v~l~~~~~~~d~~~~a~~al~~~~~ 495 (591)
=|+||||++-.||+.+-..+++|.++.+|..|. +..|.++- .+.++ ..+....+.++++.+..
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p-----l~~W~~~a~~~~~~~~~~~V~----~~~e~~~l~~~~e~a~~ 81 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQP-----LAKWAENAQRPGAWPDRIEVY----EADELTILEDAYEAAEA 81 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc-----HHHHHHhccccCCCCCCeeEE----eccchhhHHHHHHHHHh
Confidence 489999999999999999999999999998653 22232221 12222 22334456667776666
Q ss_pred cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC--CCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG--NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 496 ~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G--lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
.++|.+++||.|+-......+- ...|+||. |+.+ +|.......|+...+..... .......+++|.
T Consensus 82 ~~~d~VlvDleG~as~~~~~ai--------a~sDlVlI---P~~~s~lD~~eA~~t~~~v~~~~~~~-~~~ip~~Vl~Tr 149 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASELNDYAI--------ARSDLVLI---PMQPSQLDADEAAKTFKWVRRLEKAE-RRDIPAAVLFTR 149 (231)
T ss_pred cCCCEEEEeCCCCCchhHHHHH--------HHCCEEEE---CCCCChHHHHHHHHHHHHHHHHHHhh-CCCCCeeEEEec
Confidence 7799999999998775544433 35699998 7765 58888777774444433322 333445788888
Q ss_pred cc
Q 007747 574 FD 575 (591)
Q Consensus 574 ~D 575 (591)
+.
T Consensus 150 ~~ 151 (231)
T PF07015_consen 150 VP 151 (231)
T ss_pred CC
Confidence 75
No 465
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.20 E-value=8.1e-06 Score=82.48 Aligned_cols=127 Identities=13% Similarity=0.047 Sum_probs=63.6
Q ss_pred cccCCceEEEEEccCCCcHHHHH-HHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHH
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNL-AKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 488 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL-~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~ 488 (591)
+++|. +++|+|+||+||||++ ..+++.+.+ +.++.+...+-.. +|+......++..+ ..
T Consensus 21 i~~g~--~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~----~~~~~~~~~~g~~~---------~~---- 80 (230)
T PRK08533 21 IPAGS--LILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTT----TEFIKQMMSLGYDI---------NK---- 80 (230)
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCH----HHHHHHHHHhCCch---------HH----
Confidence 45788 9999999999999995 566666554 3444443333211 22222222222211 00
Q ss_pred HHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC----CHHHHHHHHHHHHHHhhcC
Q 007747 489 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN----DAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 489 al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl----D~~~q~~~f~~~L~~l~~~ 560 (591)
....-...-.+... ..++...++..+.+ +.......+|+++++ |||++++ |+..+ ..+.+.++.+...
T Consensus 81 ~~~~~~l~~~~~~~-~~~~~~~~~~~l~~-il~~~~~~~~~~lVI-De~t~~l~~~~d~~~~-~~l~~~l~~l~~~ 152 (230)
T PRK08533 81 KLISGKLLYIPVYP-LLSGNSEKRKFLKK-LMNTRRFYEKDVIII-DSLSSLISNDASEVAV-NDLMAFFKRISSL 152 (230)
T ss_pred HhhcCcEEEEEecc-cccChHHHHHHHHH-HHHHHHhcCCCEEEE-ECccHHhcCCcchHHH-HHHHHHHHHHHhC
Confidence 00000000001111 12333333333333 333333468998888 9999988 65543 3344666666544
No 466
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.16 E-value=7.3e-06 Score=81.10 Aligned_cols=141 Identities=18% Similarity=0.249 Sum_probs=75.4
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCC---CHHHHHHH
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK---DPAIVAKE 488 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~---d~~~~a~~ 488 (591)
.+.+.+++|+|+.|||||||+..++..+.. ..+|.+...|+.....-++++ ..+.++.....+. -......+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~~~D~~~~~----~~~~~~~~l~~gcic~~~~~~~~~ 93 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVITKFDAERLR----KYGAPAIQINTGKECHLDAHMVAH 93 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCCcccHHHHH----HcCCcEEEEcCCCcccCChHHHHH
Confidence 445779999999999999999999876542 347777777764321122222 1222222211110 11112234
Q ss_pred HHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceE
Q 007747 489 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 568 (591)
Q Consensus 489 al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~ 568 (591)
++..+...++|.++++|+|....... +. ......+.|-+++.+.+.... +...+ .....
T Consensus 94 ~l~~~~~~~~d~IiIEt~G~l~~~~~----~~-----~~~~~~i~Vvd~~~~d~~~~~---~~~~~---------~~a~i 152 (207)
T TIGR00073 94 ALEDLPLDDIDLLFIENVGNLVCPAD----FD-----LGEHMRVVLLSVTEGDDKPLK---YPGMF---------KEADL 152 (207)
T ss_pred HHHHhccCCCCEEEEecCCCcCCCcc----cc-----cccCeEEEEEecCcccchhhh---hHhHH---------hhCCE
Confidence 55544444679999999993211111 11 223333444555555433221 11111 12357
Q ss_pred EEeccccccC
Q 007747 569 ILLTKFDTID 578 (591)
Q Consensus 569 IIlTK~D~i~ 578 (591)
++++|.|.+.
T Consensus 153 iv~NK~Dl~~ 162 (207)
T TIGR00073 153 IVINKADLAE 162 (207)
T ss_pred EEEEHHHccc
Confidence 9999999853
No 467
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.16 E-value=2.8e-06 Score=83.13 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=61.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccccee--eeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--GAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Ri--gaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~ 494 (591)
+++|+||+||||||++++|++++ .++.+.+.+.|-|.. ...+... . .... +......+ .....+.+..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~-~---~~~~-~~~~~~~~-~~~~~~~l~~l~ 72 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEE-R---KNNN-YDHPDAFD-FDLLISHLQDLK 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHH-h---ccCC-CCCCCccc-HHHHHHHHHHHH
Confidence 58999999999999999999988 467788888887531 1111111 0 0100 11111111 122233444443
Q ss_pred hcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 495 RNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 495 ~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
..+ ......|.+.+++....+ .. ..++++|+ +.|+.+.++
T Consensus 73 ~~~~~~~p~~d~~~~~~~~~~~---~i-----~~~~~vI~-eg~~~~~~~ 113 (198)
T cd02023 73 NGKSVEIPVYDFKTHSRLKETV---TV-----YPADVIIL-EGILALYDK 113 (198)
T ss_pred CCCCEeccccccccCcccCCce---ec-----CCCCEEEE-echhhccch
Confidence 322 245566777776543332 12 45666666 778777653
No 468
>PRK13695 putative NTPase; Provisional
Probab=98.15 E-value=4.5e-06 Score=80.15 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=63.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecch-hhhhhhcccceeecCCCCCHHHHHHHHHHHhh-
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL-RTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT- 494 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl-~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~- 494 (591)
.++|+|++|+||||+++.|++.+.+.+-.+ .|++.|. .......+..+.....+. .. .+....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~l~~~~~ 66 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV---------GGFYTEEVREGGKRIGFKIIDLDTGE-EG-----ILARVGF 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE---------EEEEcHHHHhcCCccceEEEEcCCCC-eE-----EccccCC
Confidence 588999999999999999998877633221 1222221 111112222221110000 00 000001
Q ss_pred --hcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEec--ccCCCCHHHHHHHHHHHHHHhhcCC
Q 007747 495 --RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE--ALVGNDAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 495 --~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDE--Pt~GlD~~~q~~~f~~~L~~l~~~~ 561 (591)
.......+.+++|+.+-...+++... .+|+++++ || |+.+++.. +.+.+..+...+
T Consensus 67 ~~~~~~~~~~~~lsgle~~~~~l~~~~l-----~~~~~lll-DE~~~~e~~~~~-----~~~~l~~~~~~~ 126 (174)
T PRK13695 67 PSRPRVGKYVVNLEDLERIGIPALERAL-----EEADVIII-DEIGKMELKSPK-----FVKAVEEVLDSE 126 (174)
T ss_pred CCCCceeeEEEehHHHHHHHHHHHHhcc-----CCCCEEEE-ECCCcchhhhHH-----HHHHHHHHHhCC
Confidence 01112345678998887777777666 68999877 99 44444433 335555555443
No 469
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.13 E-value=1.3e-05 Score=88.22 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=45.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
+.+++++ +.+.+|+ +++|+|+||+||||+++.|+++..++.|.|.+.|.+.
T Consensus 146 ~~vid~l-~~i~~Gq--~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg 196 (438)
T PRK07721 146 VRAIDSL-LTVGKGQ--RVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG 196 (438)
T ss_pred hhhhhee-eeecCCc--EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence 4567788 8899999 9999999999999999999999999989888876654
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.12 E-value=2.8e-06 Score=82.71 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=36.2
Q ss_pred cccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc
Q 007747 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (591)
Q Consensus 408 ~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~ 451 (591)
+.+..|+ +++|+|||||||||+++.|++++.++.+.|.+.+.
T Consensus 20 ~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 20 LAVEARK--NILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHhCCC--EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 3445778 99999999999999999999999998888887553
No 471
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.11 E-value=1.7e-05 Score=70.01 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=29.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.++|+||+|+||||++..|+..+......+.+..++.
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 8999999999999999999998876553455444443
No 472
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.10 E-value=1.6e-05 Score=75.69 Aligned_cols=145 Identities=21% Similarity=0.205 Sum_probs=72.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCC-------CCCHHHHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY-------EKDPAIVAKEA 489 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~-------~~d~~~~a~~a 489 (591)
++.|+|++|+||||+++.+..... +.++.+...+...+++-.+ .....+.+++.... ..+......++
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~--~~~~~~i~~~~G~~~~d~~---~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH--GRKIAVIENEFGEVGIDNQ---LVVDTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc--CCcEEEEecCCCccchhHH---HHhCCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 788999999999999999887642 3455554444322222111 11111222222211 11222222222
Q ss_pred HHHh--hhcCCCcchhccchhHHHHHHHHHHHH---hchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCc
Q 007747 490 IQEA--TRNGSDVVLVDTAGRMQDNEPLMRALS---KLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564 (591)
Q Consensus 490 l~~~--~~~~~d~vliDtSGg~~qr~~LaraL~---kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~ 564 (591)
++.+ ....++++++||+|-.. ...++..+. .+......+.+++|-+|....+..... +....++.
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~-p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~---~~~~~Qi~------ 146 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLAD-PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ---TEAQSQIA------ 146 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCC-HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc---HHHHHHHH------
Confidence 2222 23457999999998753 334444331 111223445555545566554433221 12223332
Q ss_pred cceEEEeccccc
Q 007747 565 LIDGILLTKFDT 576 (591)
Q Consensus 565 ~it~IIlTK~D~ 576 (591)
.-+.+|++|.|.
T Consensus 147 ~ad~ivlnk~dl 158 (158)
T cd03112 147 FADRILLNKTDL 158 (158)
T ss_pred HCCEEEEecccC
Confidence 457799999984
No 473
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.09 E-value=1.4e-05 Score=87.64 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=73.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
+.+++. .+.+.+|+ .++|+|++|+||||+++.|++...++.+.|.+.|..... ..+.+
T Consensus 144 iraID~-ll~I~~Gq--ri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~e---------v~e~~---------- 201 (432)
T PRK06793 144 IKSIDS-MLTIGIGQ--KIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGRE---------VKDFI---------- 201 (432)
T ss_pred CEEEec-cceecCCc--EEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCccc---------HHHHH----------
Confidence 345655 48888999 999999999999999999999998877766665544211 11100
Q ss_pred CCHHHHHHHHHHHhhhcCC--C---cchhccchhHHHHHHHHH-HHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 480 KDPAIVAKEAIQEATRNGS--D---VVLVDTAGRMQDNEPLMR-ALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~--d---~vliDtSGg~~qr~~Lar-aL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
... +...+. . ....|.|.+++.+.+.+. ++++......-+++|++|++|...|+.
T Consensus 202 -------~~~---l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 202 -------RKE---LGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR 262 (432)
T ss_pred -------HHH---hhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence 000 000111 1 223466888888877754 455555545556666669999999885
No 474
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.07 E-value=2.5e-05 Score=76.32 Aligned_cols=131 Identities=19% Similarity=0.097 Sum_probs=66.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhh--cCCcEEEEcccccceeeeec--chhhhhhhc-----ccceeecCCCCCHHHHH
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFRSGAVE--QLRTHARRL-----QVPIFEKGYEKDPAIVA 486 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~--~~~G~V~i~~~Dt~Rigave--Ql~~~~~~l-----~v~l~~~~~~~d~~~~a 486 (591)
.|+.|+|.||+||||||-.||--.. +.+|. .|..+-.... -|..+.... ...+|.+.. +-...+
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~-----~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAE--s~yn~a 110 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGG-----KNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAE--SFYNVA 110 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCC-----cCcCcccccccchHHHhHHHhhcCCCCcceEEehh--HHHHHH
Confidence 3999999999999999999983322 22221 1322211000 011111111 122333211 111111
Q ss_pred HHHHHHh-hhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007747 487 KEAIQEA-TRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (591)
Q Consensus 487 ~~al~~~-~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (591)
. .++.+ ...++ ..-+...|.|+---.-+.+.+ +.--+.|| |||-++|.+..|+..+ ..|.++.+.+.
T Consensus 111 s-~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf------~~~GiYiL-DEPEa~LSp~RQlell-a~l~~la~sGa 179 (233)
T COG3910 111 S-YLDEADGEANYGGRSLHHMSHGESFLAIFHNRF------NGQGIYIL-DEPEAALSPSRQLELL-AILRDLADSGA 179 (233)
T ss_pred H-HHHhhhhhcccCCcchhhhccchHHHHHHHHHh------ccCceEEe-cCccccCCHHHHHHHH-HHHHHHHhcCC
Confidence 1 11111 11121 123444566654322222222 46667777 9999999999997655 78888888753
No 475
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.06 E-value=1.6e-05 Score=80.93 Aligned_cols=151 Identities=20% Similarity=0.234 Sum_probs=65.5
Q ss_pred EEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh-----hhhcccceeecCCCCCHHHHHHHHHHH--
Q 007747 420 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFEKGYEKDPAIVAKEAIQE-- 492 (591)
Q Consensus 420 LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~-----~~~l~v~l~~~~~~~d~~~~a~~al~~-- 492 (591)
++||.||||||+++.+..|+...+..+.+++.|+ |++.++.- .+.+.+.=....++-.|......++++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP----a~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~ 76 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP----AVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLE 76 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T----T-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch----HhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHH
Confidence 5899999999999999999998889999999997 22221110 000000000001111121111112221
Q ss_pred ---------hhhcCCCcchhccchhHHH---HHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 493 ---------ATRNGSDVVLVDTAGRMQD---NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 493 ---------~~~~~~d~vliDtSGg~~q---r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
+.....+.+++||+|...- +..+-+-+..|.+..+.-.++| -++..-.|+..-...+--.+.-+.
T Consensus 77 ~~~d~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~L-vD~~~~~~~~~f~s~~L~s~s~~~-- 153 (238)
T PF03029_consen 77 ENIDWLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFL-VDSSFCSDPSKFVSSLLLSLSIML-- 153 (238)
T ss_dssp GGHHHHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEE-E-GGG-SSHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEE-EecccccChhhHHHHHHHHHHHHh--
Confidence 1111237899999998752 2222222222333233344555 556655666554322212222111
Q ss_pred CCCccceEEEeccccccC
Q 007747 561 PNPQLIDGILLTKFDTID 578 (591)
Q Consensus 561 ~~~~~it~IIlTK~D~i~ 578 (591)
+.-.....++||+|.+.
T Consensus 154 -~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 154 -RLELPHVNVLSKIDLLS 170 (238)
T ss_dssp -HHTSEEEEEE--GGGS-
T ss_pred -hCCCCEEEeeeccCccc
Confidence 11256779999999864
No 476
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.04 E-value=4.4e-06 Score=87.29 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=37.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhhhh--cCCcEEEEcccccc
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTF 454 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~l~--~~~G~V~i~~~Dt~ 454 (591)
..|.+|+|+|||||||||++++|++++. +.+|+|.+.++|-|
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 4688999999999999999999999987 66889999999875
No 477
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.00 E-value=6.1e-06 Score=88.83 Aligned_cols=157 Identities=20% Similarity=0.158 Sum_probs=96.0
Q ss_pred ccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc------cceee---------------------eecchh
Q 007747 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD------TFRSG---------------------AVEQLR 463 (591)
Q Consensus 411 ~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D------t~Rig---------------------aveQl~ 463 (591)
.+|+ +.++||-||-||||-++.++|-++|+-|+-.. ..| .||.. +|.|.+
T Consensus 98 rpg~--vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred Ccch--hccccccCcccHHHHHHHHhCCCCCCCCCCCC-CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 4788 99999999999999999999999987654221 111 13311 111111
Q ss_pred hhhhhcccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 464 THARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 464 ~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
...+- .+. ......+......+++..+.+.+. +.-+-.+|||+-||.++|.+.. .+.|+.+| |||.+.||
T Consensus 175 r~~k~-~v~--~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~v-----q~advyMF-DEpSsYLD 245 (592)
T KOG0063|consen 175 RAVKG-TVG--SLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCV-----QKADVYMF-DEPSSYLD 245 (592)
T ss_pred HHHHH-HHH--HHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhh-----hhcceeEe-cCCcccch
Confidence 11000 000 000011111222334444445443 5667789999999999999999 89999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCc
Q 007747 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDK 580 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~ 580 (591)
...++.. ...++.+..-.+-+.+--|-++-+|-+.|-
T Consensus 246 VKQRLka-A~~IRsl~~p~~YiIVVEHDLsVLDylSDF 282 (592)
T KOG0063|consen 246 VKQRLKA-AITIRSLINPDRYIIVVEHDLSVLDYLSDF 282 (592)
T ss_pred HHHhhhH-HHHHHHhhCCCCeEEEEEeechHHHhhhcc
Confidence 8766543 355666655444444445556666655544
No 478
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.98 E-value=1e-05 Score=78.55 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=73.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCC--cEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHK--VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~--G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~ 494 (591)
.|+++|+.|+|||||+..|.+...... +.+. +... .....++.+...--..+...... ..
T Consensus 5 ~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~--~~~~-~~~~~~~e~~~~~ti~~~~~~~~---------------~~ 66 (188)
T PF00009_consen 5 NIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE--TKNA-FLDKHPEERERGITIDLSFISFE---------------KN 66 (188)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH--HHHC-HHHSSHHHHHCTSSSSSEEEEEE---------------BT
T ss_pred EEEEECCCCCCcEeechhhhhhccccccccccc--cccc-cccccchhhhccccccccccccc---------------cc
Confidence 799999999999999999997664321 1000 0000 00011111111000111111100 11
Q ss_pred hcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 495 ~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
..+....++||+|...-.....+++ ..+|.+|+|-++..|...... +.+..+.....+ -.+++||+
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~------~~~D~ailvVda~~g~~~~~~-----~~l~~~~~~~~p---~ivvlNK~ 132 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGL------RQADIAILVVDANDGIQPQTE-----EHLKILRELGIP---IIVVLNKM 132 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHH------TTSSEEEEEEETTTBSTHHHH-----HHHHHHHHTT-S---EEEEEETC
T ss_pred ccccceeecccccccceeeccccee------cccccceeeeecccccccccc-----cccccccccccc---eEEeeeec
Confidence 2344688999999876555555554 488999999999999887653 333333333222 66999999
Q ss_pred ccc
Q 007747 575 DTI 577 (591)
Q Consensus 575 D~i 577 (591)
|.+
T Consensus 133 D~~ 135 (188)
T PF00009_consen 133 DLI 135 (188)
T ss_dssp TSS
T ss_pred cch
Confidence 986
No 479
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.97 E-value=1.9e-05 Score=82.68 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=63.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHhc--CCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCceEEEEE
Q 007747 344 DRLMTKNVAEEIAEKLCESVAASLE--GKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFV 421 (591)
Q Consensus 344 ~~Ll~~~V~~~ia~~l~~~v~~~l~--g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~Gep~ii~Lv 421 (591)
+.|...||.+.+|.++...+.+.|. |....+.+.+.+.|...|.+..-..+.+. ...+..+. ....|.+++|.
T Consensus 24 rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~~~--y~~~~~i~---~~~~p~iIlI~ 98 (301)
T PRK04220 24 RSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVAEK--YLLWRRIR---KSKEPIIILIG 98 (301)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHHHH--HHHHHHHh---cCCCCEEEEEE
Confidence 4466677777777666666666554 44444444445555555555443333211 22222221 12468899999
Q ss_pred ccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce
Q 007747 422 GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (591)
Q Consensus 422 GpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R 455 (591)
|++||||||+..+||..+ ++. .+.++|++|
T Consensus 99 G~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 99 GASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 999999999999999887 333 356689876
No 480
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=97.97 E-value=5.9e-05 Score=62.70 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=58.8
Q ss_pred HHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHH
Q 007747 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390 (591)
Q Consensus 317 ~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L 390 (591)
|++.++++.++..+++.++++++++|+++|+++||+.+++.+|++.+++...+ .........++.++.++|
T Consensus 5 l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~---~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 5 LSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIK---KKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHC---TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhc---ccCCCcHHHHHHHHHHHC
Confidence 56789999998888999999999999999999999999999999999995444 223345567777777764
No 481
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.93 E-value=9.1e-06 Score=81.72 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=37.3
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEE-cccccc
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM-AACDTF 454 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i-~~~Dt~ 454 (591)
.++|.+++|+|||||||||+++.|++.+.+.+|.+.+ ..+|-|
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 4567899999999999999999999999999998766 666654
No 482
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.92 E-value=3.2e-05 Score=74.40 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=24.0
Q ss_pred ccccccccccCCceEEEEEccCCCcHHHHHHHHHh
Q 007747 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 403 L~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
|+++++....+ .++|+|++||||||+++.|++
T Consensus 10 ~~~~~~~~~~~---ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEA---KILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCC---EEEEECCCCCCHHHHHHHHhc
Confidence 34445444344 579999999999999999975
No 483
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.92 E-value=1.7e-05 Score=74.81 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|++||||||+++.|++.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 447999999999999999999875
No 484
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.90 E-value=2.6e-05 Score=81.36 Aligned_cols=135 Identities=17% Similarity=0.233 Sum_probs=76.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCC----CCCHHHHHHHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY----EKDPAIVAKEAIQE 492 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~----~~d~~~~a~~al~~ 492 (591)
++.|+|++||||||||..|++.+....+ +.+...|..... ........+++...... ..+ +..+..++..
T Consensus 106 ~v~l~G~pGsGKTTLl~~l~~~l~~~~~-~~VI~gD~~t~~----Da~rI~~~g~pvvqi~tG~~Chl~-a~mv~~Al~~ 179 (290)
T PRK10463 106 VLNLVSSPGSGKTTLLTETLMRLKDSVP-CAVIEGDQQTVN----DAARIRATGTPAIQVNTGKGCHLD-AQMIADAAPR 179 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCC-EEEECCCcCcHH----HHHHHHhcCCcEEEecCCCCCcCc-HHHHHHHHHH
Confidence 9999999999999999999998876644 444444432111 11122333455433222 122 3445667777
Q ss_pred hhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 493 ATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 493 ~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
+...+.|++++++.|..--...+ .|. ....++++ ..+.|.|... ++-..+ ..-+.+++|
T Consensus 180 L~~~~~d~liIEnvGnLvcPa~f--dlg-----e~~~v~vl--sV~eg~dkpl---Kyp~~f---------~~ADIVVLN 238 (290)
T PRK10463 180 LPLDDNGILFIENVGNLVCPASF--DLG-----EKHKVAVL--SVTEGEDKPL---KYPHMF---------AAASLMLLN 238 (290)
T ss_pred HhhcCCcEEEEECCCCccCCCcc--chh-----hceeEEEE--ECccccccch---hccchh---------hcCcEEEEE
Confidence 77777899999999952111111 122 22233333 3445554211 121111 256789999
Q ss_pred cccccC
Q 007747 573 KFDTID 578 (591)
Q Consensus 573 K~D~i~ 578 (591)
|+|.+.
T Consensus 239 KiDLl~ 244 (290)
T PRK10463 239 KVDLLP 244 (290)
T ss_pred hHHcCc
Confidence 999853
No 485
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.88 E-value=2.6e-05 Score=75.52 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=33.3
Q ss_pred ccchhHHHHHHHHHHHHhchhcCCC-cEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 504 DTAGRMQDNEPLMRALSKLIYLNNP-DLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 504 DtSGg~~qr~~LaraL~kl~~~~~P-dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
++|.|+++.+.++..|... ... .++++ |||-++|.|..|...+ +.|..+..
T Consensus 236 ~~S~G~~~~l~l~~~l~~~---~~~~~illi-DEpE~~LHp~~q~~l~-~~l~~~~~ 287 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSA---KKNGSILLI-DEPENHLHPSWQRKLI-ELLKELSK 287 (303)
T ss_dssp ---HHHHHHHHHHHHHHTT---TTT-SEEEE-ESSSTTSSHHHHHHHH-HHHHHTGG
T ss_pred cCCHHHHHHHHHHHHHhCc---CCCCeEEEe-cCCcCCCCHHHHHHHH-HHHHhhCc
Confidence 3489999888777777721 222 45554 9999999999885444 66665554
No 486
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.88 E-value=4.4e-05 Score=72.41 Aligned_cols=127 Identities=18% Similarity=0.170 Sum_probs=66.6
Q ss_pred EEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhcC
Q 007747 418 VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG 497 (591)
Q Consensus 418 i~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~ 497 (591)
++|+|..||||||+++.|++...+............ ..... -...++.+... ...+...+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~-------------~~~~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFL------DVLKE-ERERGITIKSG-------------VATFEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccc------cCCHH-HHHcCCCeecc-------------eEEEeeCC
Confidence 789999999999999999987554332222211110 00000 00001110000 00001114
Q ss_pred CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 498 ~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
....++||+|-..-+......+ ...+.+++|-++..+.+.... +.+..+... ...-.++++|+|..
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~~------~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~---~~~i~iv~nK~D~~ 127 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRGL------SVSDGAILVVDANEGVQPQTR-----EHLRIAREG---GLPIIVAINKIDRV 127 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHH------HhcCEEEEEEECCCCCcHHHH-----HHHHHHHHC---CCCeEEEEECCCCc
Confidence 5688999998654333333333 377888777778777654432 122222221 23456999999986
Q ss_pred C
Q 007747 578 D 578 (591)
Q Consensus 578 ~ 578 (591)
.
T Consensus 128 ~ 128 (189)
T cd00881 128 G 128 (189)
T ss_pred c
Confidence 3
No 487
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.87 E-value=5e-05 Score=74.83 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.++|+|++|+|||||+..|++..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 488
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.86 E-value=5.7e-05 Score=77.39 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.9
Q ss_pred cccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCC
Q 007747 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK 443 (591)
Q Consensus 408 ~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~ 443 (591)
+.+..|+ .++|+||+|+||||++++|+..+....
T Consensus 11 ~~i~~Gq--r~~I~G~~G~GKTTLlr~I~n~l~~~~ 44 (249)
T cd01128 11 APIGKGQ--RGLIVAPPKAGKTTLLQSIANAITKNH 44 (249)
T ss_pred cccCCCC--EEEEECCCCCCHHHHHHHHHhcccccc
Confidence 3455788 999999999999999999998876653
No 489
>PRK09866 hypothetical protein; Provisional
Probab=97.85 E-value=3.7e-05 Score=87.14 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=43.7
Q ss_pred CCcchhccchhHHH-HHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 498 SDVVLVDTAGRMQD-NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 498 ~d~vliDtSGg~~q-r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
..++++||+|-... +..+-+.+.+ ...+.|+||||-+++.+....+. .++..+...++ ...-.+|++|+|.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~e--qL~eADvVLFVVDat~~~s~~De-----eIlk~Lkk~~K-~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQ--QLARASAVLAVLDYTQLKSISDE-----EVREAILAVGQ-SVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHH--HHhhCCEEEEEEeCCCCCChhHH-----HHHHHHHhcCC-CCCEEEEEEcccC
Confidence 45889999998642 1112222221 12588999999999887776663 22333333322 1235589999998
Q ss_pred cC
Q 007747 577 ID 578 (591)
Q Consensus 577 i~ 578 (591)
++
T Consensus 302 ~d 303 (741)
T PRK09866 302 QD 303 (741)
T ss_pred CC
Confidence 63
No 490
>COG1159 Era GTPase [General function prediction only]
Probab=97.82 E-value=6.6e-05 Score=77.92 Aligned_cols=121 Identities=26% Similarity=0.331 Sum_probs=81.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
+++|||++-||||||++.|.|. +|.|...- +|- |.....++-- ..
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~------KisIvS~k-------~QT-TR~~I~GI~t---------------------~~ 52 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQ------KISIVSPK-------PQT-TRNRIRGIVT---------------------TD 52 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcC------ceEeecCC-------cch-hhhheeEEEE---------------------cC
Confidence 8999999999999999999874 34444321 111 1111222211 12
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchh--cCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIY--LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~--~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
+...+++||+|-.+.+-.|.+.|.+... ..+.|++|||-+++-+..+.++. ++..+... .....++++|+
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~-----il~~lk~~---~~pvil~iNKI 124 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEF-----ILEQLKKT---KTPVILVVNKI 124 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHH-----HHHHHhhc---CCCeEEEEEcc
Confidence 4578999999999888888887776443 47899999999999988887652 23333331 23456899999
Q ss_pred cccCCc
Q 007747 575 DTIDDK 580 (591)
Q Consensus 575 D~i~d~ 580 (591)
|.+...
T Consensus 125 D~~~~~ 130 (298)
T COG1159 125 DKVKPK 130 (298)
T ss_pred ccCCcH
Confidence 987543
No 491
>PLN02796 D-glycerate 3-kinase
Probab=97.82 E-value=4.7e-05 Score=81.16 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=62.7
Q ss_pred cCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccc
Q 007747 329 NLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA 408 (591)
Q Consensus 329 ~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~ 408 (591)
-+|.+++...+.+...+ ..++|..+.- ....+. ......+.+++-|.. ..+++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~l~----------~~~~~~~~~~~~P~~-~~il~~l~~ 87 (347)
T PLN02796 31 GLTAEDVAESIDEWIAH----------GLRLCRLLQF--DELSLS----------ASQKARVYHYYLPVY-LWCEDQLEA 87 (347)
T ss_pred CCCHHHHHHHHHHHHHH----------HHHHHHHcCC--CcccCC----------HHHHHHHHHHHcCcH-HHHHHHHHH
Confidence 46777777776666653 6778875531 111111 112233344444432 235666666
Q ss_pred cc---cc---CCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 409 AK---EQ---RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 409 ~i---~~---Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
.+ .+ ..|.+++|+|++||||||+++.|++++.+.+.++.....|-|
T Consensus 88 ~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 88 HRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred HHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 55 22 357899999999999999999999999876544444444433
No 492
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.80 E-value=5.6e-05 Score=70.68 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEccCCCcHHHHHHHHHhhhh
Q 007747 418 VVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 418 i~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
++|+|+.|||||||++.|++...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcc
Confidence 78999999999999999987543
No 493
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.80 E-value=6.4e-05 Score=67.73 Aligned_cols=69 Identities=30% Similarity=0.331 Sum_probs=41.8
Q ss_pred CCCcchhccchhHH---HH---HHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEE
Q 007747 497 GSDVVLVDTAGRMQ---DN---EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (591)
Q Consensus 497 ~~d~vliDtSGg~~---qr---~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (591)
..+..++||+|... .+ ..+++.+. ..++.+++|-.+.......... + +..... ......++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~-----~~~d~il~v~~~~~~~~~~~~~--~---~~~~~~---~~~~~ivv 110 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVL-----ERADLILFVVDADLRADEEEEK--L---LELLRE---RGKPVLLV 110 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHH-----HhCCEEEEEEeCCCCCCHHHHH--H---HHHHHh---cCCeEEEE
Confidence 45678888888432 11 24555566 7889988877777776655542 1 111111 12345699
Q ss_pred eccccccC
Q 007747 571 LTKFDTID 578 (591)
Q Consensus 571 lTK~D~i~ 578 (591)
+||+|.+.
T Consensus 111 ~nK~D~~~ 118 (163)
T cd00880 111 LNKIDLLP 118 (163)
T ss_pred EEccccCC
Confidence 99999853
No 494
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.79 E-value=5.4e-05 Score=69.04 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHhh
Q 007747 418 VVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 418 i~LvGpNGsGKTTlL~kLAg~ 438 (591)
++|+|++||||||+++.|++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999864
No 495
>PTZ00035 Rad51 protein; Provisional
Probab=97.78 E-value=0.00021 Score=76.34 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=75.5
Q ss_pred chHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007747 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (591)
Q Consensus 315 g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 394 (591)
|+-....+.|.....-|-+++-.. .-++....+|++.+-|++|++.+++.... .|.+..+..++. ....++-
T Consensus 30 g~~~~~~~kL~~~g~~t~~~~~~~--~~~~L~~~~gis~~~~~~i~~~~~~~~~~----~~~ta~~~~~~~--~~~~~is 101 (337)
T PTZ00035 30 GINAADIKKLKEAGICTVESVAYA--TKKDLCNIKGISEAKVEKIKEAASKLVPM----GFISATEYLEAR--KNIIRIT 101 (337)
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhC--CHHHHHHhhCCCHHHHHHHHHHHHHhccc----CCCCHHHHHHhh--ccCcccc
Confidence 333445666665555455444222 11222334899999999999999875432 344444333321 1122222
Q ss_pred CCCCcccccccc-ccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-c-----CCcEE-EEcccccceee
Q 007747 395 TPRRSIDILRDV-HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-Q-----HKVSV-MMAACDTFRSG 457 (591)
Q Consensus 395 ~~~~~~~iL~~i-s~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-~-----~~G~V-~i~~~Dt~Rig 457 (591)
+. ...|+.+ .=-++.|. ++.|+||+|+||||++..+|.... | .+|+| +|.+..+|+..
T Consensus 102 TG---~~~LD~lLgGGi~~G~--iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~e 167 (337)
T PTZ00035 102 TG---STQLDKLLGGGIETGS--ITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPE 167 (337)
T ss_pred CC---cHHHHHHhCCCCCCCe--EEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHH
Confidence 21 2223222 11345788 999999999999999999986554 3 45677 66676666543
No 496
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.78 E-value=3.9e-05 Score=91.55 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=58.8
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCC--cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
+..+.++|||++|++.||++|. .+| .++|| ||||+|||+.+.. .+.+.|..+.+.+.++.+..|-+.-+..
T Consensus 484 ~r~~~~LSgGE~QRv~LA~aL~-----~~~~~~llIL-DEPtagLd~~~~~-~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 484 SRSAGTLSGGEAQRIRLATQIG-----SGLTGVLYVL-DEPSIGLHQRDND-RLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred CCchhhCCHHHHHHHHHHHHHh-----hCCCCcEEEe-cCCccCCCHHHHH-HHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 6778899999999999999999 776 77777 9999999999974 4558888887765555544444444542
Q ss_pred cCCcEEEE
Q 007747 577 IDDKHYQW 584 (591)
Q Consensus 577 i~d~vGal 584 (591)
+|++..|
T Consensus 557 -aD~vi~L 563 (943)
T PRK00349 557 -ADYIVDI 563 (943)
T ss_pred -CCEEEEe
Confidence 5655444
No 497
>PRK00089 era GTPase Era; Reviewed
Probab=97.77 E-value=0.00014 Score=75.50 Aligned_cols=118 Identities=29% Similarity=0.320 Sum_probs=62.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
+++|+|+.|||||||++.|+|. ++.+..... |.. .....+ ++. ..
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~------~~~~vs~~~-------~tt-~~~i~~--i~~-------------------~~ 51 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQ------KISIVSPKP-------QTT-RHRIRG--IVT-------------------ED 51 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCC------ceeecCCCC-------Ccc-cccEEE--EEE-------------------cC
Confidence 8999999999999999999763 222221110 000 000000 000 11
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhc--hhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKL--IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl--~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
+...+++||+|-......+-+.+... ....+.|++++|-+++.++..... ..+..+... .....+++||+
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~-----~i~~~l~~~---~~pvilVlNKi 123 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDE-----FILEKLKKV---KTPVILVLNKI 123 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHH-----HHHHHHhhc---CCCEEEEEECC
Confidence 24577889988543222221111110 012578888888777775554332 222222221 13456899999
Q ss_pred ccc
Q 007747 575 DTI 577 (591)
Q Consensus 575 D~i 577 (591)
|..
T Consensus 124 Dl~ 126 (292)
T PRK00089 124 DLV 126 (292)
T ss_pred cCC
Confidence 986
No 498
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.76 E-value=4.6e-05 Score=90.79 Aligned_cols=78 Identities=13% Similarity=0.062 Sum_probs=57.8
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCC--cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
+..+..+||||+||+.||++|. .+| .++|| ||||+|||+.+.. .+.+.|..+...++++.+..|-+.-+.
T Consensus 482 ~r~~~tLSGGE~QRv~LA~aL~-----~~~~~~llIL-DEPtagLD~~~~~-~L~~~L~~L~~~G~TVIvVeHd~~~i~- 553 (924)
T TIGR00630 482 SRAAGTLSGGEAQRIRLATQIG-----SGLTGVLYVL-DEPSIGLHQRDNE-RLINTLKRLRDLGNTVIVVEHDEETIR- 553 (924)
T ss_pred CCCcCcCCHHHHHHHHHHHHHh-----hCCCCcEEEE-cCCccCCCHHHHH-HHHHHHHHHHhCCCEEEEEECCHHHHh-
Confidence 5667889999999999999999 775 67777 9999999999974 455888888776555554444444444
Q ss_pred cCCcEEEE
Q 007747 577 IDDKHYQW 584 (591)
Q Consensus 577 i~d~vGal 584 (591)
.+|++..|
T Consensus 554 ~aD~vi~L 561 (924)
T TIGR00630 554 AADYVIDI 561 (924)
T ss_pred hCCEEEEe
Confidence 45554433
No 499
>PHA02518 ParA-like protein; Provisional
Probab=97.75 E-value=0.00023 Score=69.62 Aligned_cols=142 Identities=17% Similarity=0.197 Sum_probs=79.8
Q ss_pred EEEEEccCC-CcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhc-ccceeecCCCCCHHHHHHHHHHHhh
Q 007747 417 VVVFVGVNG-VGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-QVPIFEKGYEKDPAIVAKEAIQEAT 494 (591)
Q Consensus 417 ii~LvGpNG-sGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l-~v~l~~~~~~~d~~~~a~~al~~~~ 494 (591)
+|+|.++-| +||||+...||.++...+.+|+++.+|..+..... ........ .++... .. ....+.+..+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~-~~~~~~~~~~i~~~~--~~----~~~~~~l~~~- 73 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW-AEAREEGEPLIPVVR--MG----KSIRADLPKV- 73 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH-HHhcccCCCCCchhh--cc----HHHHHHHHHH-
Confidence 677887766 99999999999999888899999999985421110 00000000 111111 00 1122233332
Q ss_pred hcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 495 ~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
...+|++++||+|+.. .+++... ...|++|++-+|.. .|... ...+.+.+..+.........-+++.+++
T Consensus 74 ~~~~d~viiD~p~~~~---~~~~~~l-----~~aD~viip~~ps~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~iv~n~~ 143 (211)
T PHA02518 74 ASGYDYVVVDGAPQDS---ELARAAL-----RIADMVLIPVQPSP-FDIWA-APDLVELIKARQEVTDGLPKFAFIISRA 143 (211)
T ss_pred hccCCEEEEeCCCCcc---HHHHHHH-----HHCCEEEEEeCCCh-hhHHH-HHHHHHHHHHHHhhCCCCceEEEEEecc
Confidence 3568999999999854 3334444 46788988777763 22221 1222244444332222334456777776
Q ss_pred cc
Q 007747 575 DT 576 (591)
Q Consensus 575 D~ 576 (591)
+.
T Consensus 144 ~~ 145 (211)
T PHA02518 144 IK 145 (211)
T ss_pred CC
Confidence 53
No 500
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.75 E-value=0.00017 Score=72.49 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=32.9
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D 452 (591)
++.|. ++.|.|++|+||||+...++.-....+.+|++.+.+
T Consensus 22 ~~~g~--~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 22 IPFPS--LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CcCCc--EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 34677 999999999999999999875444467888888765
Done!