Query 007747
Match_columns 591
No_of_seqs 459 out of 3379
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fh5_A Signal recognition part 100.0 1.4E-43 4.8E-48 339.7 11.3 138 1-147 10-156 (185)
2 3e70_C DPA, signal recognition 100.0 5.5E-33 1.9E-37 291.4 12.4 252 324-589 41-293 (328)
3 3dm5_A SRP54, signal recogniti 100.0 1.8E-31 6.1E-36 289.3 16.6 255 315-588 8-263 (443)
4 3b9q_A Chloroplast SRP recepto 100.0 1.2E-31 4.3E-36 278.0 14.1 235 325-589 22-271 (302)
5 2og2_A Putative signal recogni 100.0 3E-31 1E-35 281.3 16.7 230 333-589 84-328 (359)
6 3kl4_A SRP54, signal recogniti 100.0 4.4E-31 1.5E-35 286.0 16.0 255 316-588 5-262 (433)
7 2yhs_A FTSY, cell division pro 100.0 4.1E-31 1.4E-35 289.2 11.1 237 327-589 220-463 (503)
8 2ffh_A Protein (FFH); SRP54, s 100.0 4.8E-30 1.6E-34 277.4 17.6 253 316-588 8-261 (425)
9 1j8m_F SRP54, signal recogniti 100.0 2.8E-29 9.6E-34 259.8 15.6 256 314-588 4-263 (297)
10 1rj9_A FTSY, signal recognitio 100.0 2.6E-29 8.9E-34 260.9 12.5 245 317-589 11-272 (304)
11 1zu4_A FTSY; GTPase, signal re 100.0 8.8E-29 3E-33 258.7 11.8 250 316-588 17-278 (320)
12 2xxa_A Signal recognition part 99.9 1E-27 3.5E-32 260.0 17.3 255 315-587 7-263 (433)
13 1vma_A Cell division protein F 99.9 8.2E-28 2.8E-32 249.9 13.2 236 318-589 31-274 (306)
14 1ls1_A Signal recognition part 99.9 2.6E-26 8.9E-31 237.2 16.4 253 316-588 8-261 (295)
15 2j37_W Signal recognition part 99.9 1.5E-26 5E-31 255.0 13.1 253 316-586 9-262 (504)
16 2v3c_C SRP54, signal recogniti 99.9 2.6E-26 8.8E-31 249.0 14.7 252 315-586 6-260 (432)
17 3gfo_A Cobalt import ATP-bindi 99.9 1.7E-26 5.7E-31 236.6 12.3 174 400-584 21-217 (275)
18 3fvq_A Fe(3+) IONS import ATP- 99.9 4.9E-26 1.7E-30 241.0 12.4 174 398-584 15-212 (359)
19 1g6h_A High-affinity branched- 99.9 8.4E-26 2.9E-30 228.8 13.3 177 399-584 19-226 (257)
20 2pcj_A ABC transporter, lipopr 99.9 3.5E-26 1.2E-30 227.1 9.7 175 400-584 17-212 (224)
21 1vpl_A ABC transporter, ATP-bi 99.9 6.7E-26 2.3E-30 229.8 11.9 177 399-584 27-219 (256)
22 1b0u_A Histidine permease; ABC 99.9 6E-26 2.1E-30 230.7 11.2 177 399-584 18-226 (262)
23 2olj_A Amino acid ABC transpor 99.9 7.2E-26 2.5E-30 230.5 11.3 177 399-584 36-232 (263)
24 3tif_A Uncharacterized ABC tra 99.9 1.2E-25 4E-30 225.0 12.2 174 400-583 18-217 (235)
25 3tui_C Methionine import ATP-b 99.9 6.3E-26 2.2E-30 240.6 10.6 177 399-584 40-237 (366)
26 1ji0_A ABC transporter; ATP bi 99.9 1.5E-25 5.3E-30 224.7 12.8 175 400-584 19-212 (240)
27 2ihy_A ABC transporter, ATP-bi 99.9 2.2E-25 7.4E-30 228.8 14.0 177 399-584 33-236 (279)
28 4g1u_C Hemin import ATP-bindin 99.9 1E-25 3.5E-30 229.6 11.3 177 398-584 22-221 (266)
29 2yz2_A Putative ABC transporte 99.9 2.9E-25 9.8E-30 226.1 12.7 176 400-584 20-211 (266)
30 3rlf_A Maltose/maltodextrin im 99.9 1.4E-25 4.8E-30 239.2 10.4 173 398-584 14-207 (381)
31 1sgw_A Putative ABC transporte 99.9 6.8E-26 2.3E-30 224.0 6.4 150 401-560 23-182 (214)
32 2onk_A Molybdate/tungstate ABC 99.9 2.9E-25 9.8E-30 223.1 9.8 173 402-584 14-200 (240)
33 2yyz_A Sugar ABC transporter, 99.9 4.9E-25 1.7E-29 233.6 11.9 177 399-584 15-207 (359)
34 1z47_A CYSA, putative ABC-tran 99.9 4.8E-25 1.6E-29 233.3 11.6 174 399-584 27-219 (355)
35 2it1_A 362AA long hypothetical 99.9 6.2E-25 2.1E-29 233.0 11.7 177 399-584 15-207 (362)
36 1g29_1 MALK, maltose transport 99.9 7.8E-25 2.7E-29 233.2 11.4 177 399-584 15-213 (372)
37 1v43_A Sugar-binding transport 99.9 8E-25 2.7E-29 233.0 11.4 177 399-584 23-215 (372)
38 1oxx_K GLCV, glucose, ABC tran 99.9 4.7E-25 1.6E-29 233.3 9.4 174 402-584 20-214 (353)
39 3d31_A Sulfate/molybdate ABC t 99.9 3.8E-25 1.3E-29 233.6 8.6 172 402-584 15-201 (348)
40 2qi9_C Vitamin B12 import ATP- 99.9 1E-24 3.5E-29 220.2 9.7 172 401-584 14-206 (249)
41 2nq2_C Hypothetical ABC transp 99.9 1.9E-24 6.4E-29 218.7 10.6 172 400-584 18-202 (253)
42 2ff7_A Alpha-hemolysin translo 99.9 5.1E-24 1.7E-28 214.7 10.5 169 400-584 22-216 (247)
43 2d2e_A SUFC protein; ABC-ATPas 99.9 2.5E-24 8.7E-29 217.1 8.2 176 400-584 16-217 (250)
44 2pjz_A Hypothetical protein ST 99.9 7.8E-24 2.7E-28 215.5 11.8 168 400-584 18-199 (263)
45 2zu0_C Probable ATP-dependent 99.9 7.6E-24 2.6E-28 215.8 10.3 173 399-584 32-238 (267)
46 2ixe_A Antigen peptide transpo 99.9 1.6E-23 5.4E-28 213.9 11.2 170 400-584 32-229 (271)
47 1mv5_A LMRA, multidrug resista 99.9 9.5E-24 3.3E-28 211.9 6.7 170 400-584 15-210 (243)
48 2ghi_A Transport protein; mult 99.9 3.8E-23 1.3E-27 209.8 9.8 167 400-583 33-225 (260)
49 2cbz_A Multidrug resistance-as 99.9 6.5E-23 2.2E-27 205.3 9.5 134 400-548 18-165 (237)
50 2pze_A Cystic fibrosis transme 99.9 3.6E-23 1.2E-27 206.0 6.9 131 400-548 21-168 (229)
51 3nh6_A ATP-binding cassette SU 99.9 4E-23 1.4E-27 214.6 7.4 146 400-559 67-238 (306)
52 2px0_A Flagellar biosynthesis 99.9 2.3E-22 7.7E-27 207.9 12.4 227 331-588 34-263 (296)
53 3gd7_A Fusion complex of cysti 99.9 1.2E-22 4.1E-27 217.5 9.4 155 398-573 32-212 (390)
54 2bbs_A Cystic fibrosis transme 99.8 3.7E-22 1.3E-26 205.9 4.9 130 400-548 51-197 (290)
55 3b5x_A Lipid A export ATP-bind 99.8 3.9E-21 1.3E-25 215.4 12.1 169 400-583 356-550 (582)
56 2yl4_A ATP-binding cassette SU 99.8 3.4E-21 1.2E-25 216.4 9.5 149 400-559 357-531 (595)
57 3b60_A Lipid A export ATP-bind 99.8 4.6E-21 1.6E-25 214.9 8.5 169 400-583 356-550 (582)
58 4a82_A Cystic fibrosis transme 99.8 5.6E-21 1.9E-25 214.1 8.7 147 399-559 353-525 (578)
59 3qf4_A ABC transporter, ATP-bi 99.8 9.9E-21 3.4E-25 212.5 9.7 169 399-583 355-549 (587)
60 3qf4_B Uncharacterized ABC tra 99.8 6.5E-21 2.2E-25 214.4 6.2 145 400-558 368-538 (598)
61 3ozx_A RNAse L inhibitor; ATP 99.8 1.1E-20 3.8E-25 210.1 7.5 168 403-584 284-459 (538)
62 3bk7_A ABC transporter ATP-bin 99.8 1.3E-20 4.4E-25 212.3 6.4 168 403-585 372-546 (607)
63 1yqt_A RNAse L inhibitor; ATP- 99.8 1.9E-20 6.4E-25 208.3 5.7 174 401-584 36-231 (538)
64 1yqt_A RNAse L inhibitor; ATP- 99.8 1.3E-20 4.5E-25 209.6 4.2 168 403-585 302-476 (538)
65 3bk7_A ABC transporter ATP-bin 99.8 4.1E-20 1.4E-24 208.2 5.3 174 401-584 106-301 (607)
66 3j16_B RLI1P; ribosome recycli 99.8 3.8E-19 1.3E-23 200.3 8.3 166 402-583 362-540 (608)
67 4f4c_A Multidrug resistance pr 99.8 1.5E-18 5.2E-23 210.7 12.7 156 401-573 1093-1274(1321)
68 3ux8_A Excinuclease ABC, A sub 99.8 4.6E-19 1.6E-23 201.7 7.5 176 399-584 30-276 (670)
69 3j16_B RLI1P; ribosome recycli 99.7 4.4E-19 1.5E-23 199.7 6.3 171 403-584 94-294 (608)
70 3ozx_A RNAse L inhibitor; ATP 99.7 3.5E-19 1.2E-23 198.1 4.2 164 411-584 23-210 (538)
71 3g5u_A MCG1178, multidrug resi 99.7 4E-18 1.4E-22 206.6 11.8 169 401-583 1047-1241(1284)
72 2iw3_A Elongation factor 3A; a 99.7 1.9E-18 6.6E-23 202.3 8.6 60 400-463 686-745 (986)
73 4f4c_A Multidrug resistance pr 99.7 3.9E-18 1.3E-22 207.1 11.5 155 399-572 430-610 (1321)
74 3g5u_A MCG1178, multidrug resi 99.7 3.3E-18 1.1E-22 207.2 10.7 154 400-572 403-582 (1284)
75 2iw3_A Elongation factor 3A; a 99.7 3E-17 1E-21 192.3 10.1 160 399-584 447-618 (986)
76 1tq4_A IIGP1, interferon-induc 99.7 6.4E-19 2.2E-23 189.9 -6.8 151 401-558 37-213 (413)
77 3ux8_A Excinuclease ABC, A sub 99.6 5.8E-16 2E-20 176.2 11.4 78 499-584 538-618 (670)
78 2npi_A Protein CLP1; CLP1-PCF1 99.6 3.5E-17 1.2E-21 178.8 -3.2 129 405-544 130-276 (460)
79 4gp7_A Metallophosphoesterase; 99.6 2.7E-16 9.1E-21 148.8 1.6 115 405-545 1-118 (171)
80 3b85_A Phosphate starvation-in 99.6 7.7E-17 2.6E-21 158.4 -4.0 123 402-557 15-146 (208)
81 2vf7_A UVRA2, excinuclease ABC 99.5 6.7E-15 2.3E-19 170.7 8.3 91 486-584 710-805 (842)
82 3sop_A Neuronal-specific septi 99.5 9.9E-16 3.4E-20 156.1 0.9 141 417-578 4-154 (270)
83 1ye8_A Protein THEP1, hypothet 99.5 2.5E-14 8.4E-19 137.0 9.4 102 417-546 2-119 (178)
84 4aby_A DNA repair protein RECN 99.5 9.9E-15 3.4E-19 155.6 5.7 57 505-573 296-354 (415)
85 2r6f_A Excinuclease ABC subuni 99.5 3.3E-14 1.1E-18 165.9 9.6 89 488-584 827-920 (972)
86 3pih_A Uvrabc system protein A 99.5 1.2E-13 4.2E-18 161.4 11.2 78 499-584 800-880 (916)
87 2ygr_A Uvrabc system protein A 99.5 8.8E-14 3E-18 162.7 9.7 89 488-584 845-938 (993)
88 1z6g_A Guanylate kinase; struc 99.4 2.2E-15 7.5E-20 148.2 -7.8 128 402-545 12-162 (218)
89 2vx8_A Nucleoporin-like protei 99.4 4.4E-13 1.5E-17 127.7 7.6 113 1-123 44-159 (169)
90 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 4.1E-13 1.4E-17 142.3 7.5 81 500-583 275-356 (365)
91 3aez_A Pantothenate kinase; tr 99.4 6.1E-14 2.1E-18 145.9 0.4 114 410-542 87-208 (312)
92 2pt7_A CAG-ALFA; ATPase, prote 99.3 5.7E-13 2E-17 139.5 6.7 92 402-539 160-251 (330)
93 1e69_A Chromosome segregation 99.3 1.1E-11 3.6E-16 128.8 10.3 75 499-581 214-291 (322)
94 2v9p_A Replication protein E1; 99.2 1.5E-12 5E-17 135.1 0.7 111 400-546 113-229 (305)
95 1tf7_A KAIC; homohexamer, hexa 99.2 3.3E-11 1.1E-15 133.3 11.1 134 409-571 277-417 (525)
96 2eyu_A Twitching motility prot 99.2 2.4E-11 8.1E-16 123.2 8.8 98 401-546 15-113 (261)
97 1tf7_A KAIC; homohexamer, hexa 99.2 4.5E-11 1.5E-15 132.2 11.4 148 399-573 24-187 (525)
98 1cr0_A DNA primase/helicase; R 99.2 1.1E-11 3.8E-16 126.4 5.9 52 400-453 22-74 (296)
99 2ehv_A Hypothetical protein PH 99.2 2.5E-11 8.7E-16 119.1 8.0 157 409-585 26-206 (251)
100 1znw_A Guanylate kinase, GMP k 99.2 3.6E-12 1.2E-16 123.6 0.1 157 401-573 10-186 (207)
101 2qm8_A GTPase/ATPase; G protei 99.1 5.6E-11 1.9E-15 124.6 8.8 148 401-577 43-206 (337)
102 3qkt_A DNA double-strand break 99.1 3.4E-10 1.2E-14 118.3 13.7 79 500-586 244-328 (339)
103 2w0m_A SSO2452; RECA, SSPF, un 99.1 2E-11 6.8E-16 118.0 4.0 52 400-453 9-61 (235)
104 3thx_B DNA mismatch repair pro 99.1 7.9E-11 2.7E-15 138.0 9.0 137 400-576 660-797 (918)
105 2i3b_A HCR-ntpase, human cance 99.1 1.2E-11 4E-16 119.6 1.4 122 417-563 3-137 (189)
106 3thx_A DNA mismatch repair pro 99.1 2E-10 6.9E-15 134.8 11.8 135 401-575 650-785 (934)
107 2jeo_A Uridine-cytidine kinase 99.1 9.9E-12 3.4E-16 123.7 0.2 130 398-543 10-148 (245)
108 2o8b_B DNA mismatch repair pro 99.1 7.1E-11 2.4E-15 140.0 7.3 143 401-582 770-923 (1022)
109 1ewq_A DNA mismatch repair pro 99.1 1.1E-10 3.7E-15 134.7 8.3 127 401-574 567-697 (765)
110 2qnr_A Septin-2, protein NEDD5 99.0 1.9E-11 6.5E-16 126.2 -0.2 147 400-577 11-168 (301)
111 2obl_A ESCN; ATPase, hydrolase 99.0 5.7E-11 2E-15 125.2 2.9 52 399-453 58-109 (347)
112 4a74_A DNA repair and recombin 99.0 2E-10 6.8E-15 111.3 6.3 43 409-453 21-70 (231)
113 1pzn_A RAD51, DNA repair and r 99.0 8.5E-10 2.9E-14 116.2 10.4 227 315-575 42-290 (349)
114 2dpy_A FLII, flagellum-specifi 98.9 2.4E-10 8.3E-15 124.0 3.0 50 399-451 144-193 (438)
115 3jvv_A Twitching mobility prot 98.9 1E-09 3.4E-14 116.1 7.4 40 409-450 119-159 (356)
116 1wb9_A DNA mismatch repair pro 98.9 1.6E-09 5.5E-14 125.5 9.2 133 401-574 596-729 (800)
117 3asz_A Uridine kinase; cytidin 98.9 1.5E-11 5.1E-16 118.7 -6.7 121 412-547 5-137 (211)
118 1nlf_A Regulatory protein REPA 98.9 6.5E-09 2.2E-13 105.1 12.0 140 409-574 26-180 (279)
119 2qag_C Septin-7; cell cycle, c 98.9 3.8E-10 1.3E-14 121.8 2.4 149 398-578 22-181 (418)
120 1htw_A HI0065; nucleotide-bind 98.8 6.5E-10 2.2E-14 104.4 2.0 50 401-453 21-70 (158)
121 1lw7_A Transcriptional regulat 98.8 6.6E-10 2.2E-14 117.2 2.1 130 402-538 157-329 (365)
122 2o5v_A DNA replication and rep 98.8 1.3E-08 4.4E-13 107.7 11.5 73 501-582 261-338 (359)
123 1pui_A ENGB, probable GTP-bind 98.8 2.3E-09 7.9E-14 102.4 4.8 146 401-559 16-198 (210)
124 2ewv_A Twitching motility prot 98.8 9.1E-09 3.1E-13 109.3 9.0 47 402-452 127-174 (372)
125 3ec2_A DNA replication protein 98.8 4.3E-08 1.5E-12 92.2 11.9 34 409-444 34-67 (180)
126 2qag_B Septin-6, protein NEDD5 98.7 2.4E-08 8.2E-13 107.9 9.2 156 403-573 30-217 (427)
127 2gza_A Type IV secretion syste 98.7 1.8E-08 6.1E-13 106.5 7.9 50 401-452 163-212 (361)
128 3szr_A Interferon-induced GTP- 98.7 4.8E-09 1.6E-13 118.2 3.7 37 417-453 47-84 (608)
129 2www_A Methylmalonic aciduria 98.7 3.1E-08 1.1E-12 104.2 8.4 137 416-577 75-225 (349)
130 2cvh_A DNA repair and recombin 98.7 1.2E-07 4E-12 91.1 11.6 107 403-543 9-120 (220)
131 2p67_A LAO/AO transport system 98.6 4.5E-08 1.6E-12 102.4 8.7 153 402-577 45-207 (341)
132 3p32_A Probable GTPase RV1496/ 98.6 1.5E-07 5.2E-12 98.9 11.4 144 413-577 77-230 (355)
133 1s96_A Guanylate kinase, GMP k 98.6 3.9E-08 1.3E-12 96.9 6.4 54 410-465 13-73 (219)
134 1n0w_A DNA repair protein RAD5 98.6 6E-08 2.1E-12 94.6 7.6 42 410-453 21-69 (243)
135 2kjq_A DNAA-related protein; s 98.6 7.3E-08 2.5E-12 89.2 7.5 29 412-442 35-63 (149)
136 2f1r_A Molybdopterin-guanine d 98.6 1.6E-09 5.4E-14 103.1 -4.4 101 417-521 4-120 (171)
137 2rcn_A Probable GTPase ENGC; Y 98.5 1E-08 3.4E-13 108.5 0.4 112 404-520 207-329 (358)
138 3euj_A Chromosome partition pr 98.5 2.9E-08 9.9E-13 108.8 3.0 51 400-453 17-67 (483)
139 1odf_A YGR205W, hypothetical 3 98.5 1.6E-08 5.3E-13 104.0 -0.2 121 413-544 29-168 (290)
140 1f2t_B RAD50 ABC-ATPase; DNA d 98.5 2.6E-07 8.9E-12 85.8 7.7 78 499-584 52-135 (148)
141 2bbw_A Adenylate kinase 4, AK4 98.4 3.9E-08 1.3E-12 97.5 1.1 38 415-452 27-67 (246)
142 1sxj_E Activator 1 40 kDa subu 98.4 6.9E-07 2.4E-11 92.4 9.2 36 418-453 39-75 (354)
143 3tr0_A Guanylate kinase, GMP k 98.4 2E-07 6.9E-12 88.7 4.4 54 408-467 2-64 (205)
144 2yv5_A YJEQ protein; hydrolase 98.4 5.6E-08 1.9E-12 100.2 0.3 103 412-517 164-300 (302)
145 1sq5_A Pantothenate kinase; P- 98.3 1.7E-07 5.8E-12 96.6 3.4 41 412-454 79-121 (308)
146 3lda_A DNA repair protein RAD5 98.3 2.5E-06 8.4E-11 91.5 12.3 192 314-543 89-288 (400)
147 1udx_A The GTP-binding protein 98.3 2.7E-08 9.2E-13 107.3 -3.5 123 404-546 148-284 (416)
148 3t34_A Dynamin-related protein 98.3 8E-07 2.8E-11 93.2 7.6 41 401-446 25-67 (360)
149 1oix_A RAS-related protein RAB 98.2 7.5E-07 2.6E-11 84.4 5.4 129 415-554 29-187 (191)
150 1yrb_A ATP(GTP)binding protein 98.2 2.9E-06 9.9E-11 83.9 9.7 155 415-577 14-184 (262)
151 3lnc_A Guanylate kinase, GMP k 98.2 2.8E-07 9.7E-12 90.2 2.2 38 401-440 15-53 (231)
152 3pih_A Uvrabc system protein A 98.2 4.8E-07 1.6E-11 106.1 4.2 129 434-573 387-524 (916)
153 2dr3_A UPF0273 protein PH0284; 98.2 4.2E-06 1.4E-10 81.5 9.6 44 408-453 18-61 (247)
154 3vaa_A Shikimate kinase, SK; s 98.2 7.4E-07 2.5E-11 85.4 3.3 42 396-439 8-49 (199)
155 2e87_A Hypothetical protein PH 98.2 1.6E-06 5.5E-11 91.0 6.0 26 414-439 166-191 (357)
156 1u0l_A Probable GTPase ENGC; p 98.1 7.2E-07 2.5E-11 91.7 2.8 50 412-463 168-229 (301)
157 1zp6_A Hypothetical protein AT 98.1 1.3E-06 4.4E-11 82.3 4.3 40 410-453 6-45 (191)
158 2oap_1 GSPE-2, type II secreti 98.1 7.5E-07 2.6E-11 98.4 2.4 51 401-453 248-298 (511)
159 2r6a_A DNAB helicase, replicat 98.1 3.7E-05 1.3E-09 83.3 15.2 183 373-573 157-362 (454)
160 1nij_A Hypothetical protein YJ 98.1 3.8E-07 1.3E-11 94.5 -0.5 37 417-453 6-50 (318)
161 1p9r_A General secretion pathw 98.0 1.2E-06 3.9E-11 94.6 2.1 41 411-453 165-205 (418)
162 4eun_A Thermoresistant glucoki 98.0 3.6E-06 1.2E-10 80.6 4.9 37 411-453 27-63 (200)
163 3tqc_A Pantothenate kinase; bi 98.0 4.1E-06 1.4E-10 87.3 5.6 44 412-455 89-134 (321)
164 3c8u_A Fructokinase; YP_612366 98.0 3.3E-06 1.1E-10 81.5 4.5 38 411-450 20-60 (208)
165 2dy1_A Elongation factor G; tr 98.0 4.8E-06 1.6E-10 94.8 6.2 132 410-577 6-139 (665)
166 2f9l_A RAB11B, member RAS onco 98.0 5.3E-06 1.8E-10 78.7 5.4 37 416-452 6-53 (199)
167 3izq_1 HBS1P, elongation facto 98.0 3.2E-06 1.1E-10 95.3 4.4 107 316-438 40-190 (611)
168 1lvg_A Guanylate kinase, GMP k 98.0 2.8E-06 9.4E-11 81.8 3.3 27 412-440 3-29 (198)
169 3a00_A Guanylate kinase, GMP k 98.0 1.9E-06 6.6E-11 81.6 1.9 28 416-443 2-29 (186)
170 3lxx_A GTPase IMAP family memb 97.9 1.8E-05 6.1E-10 77.6 8.6 30 414-443 28-57 (239)
171 1rz3_A Hypothetical protein rb 97.9 5.5E-06 1.9E-10 79.6 4.8 41 415-455 22-62 (201)
172 1t9h_A YLOQ, probable GTPase E 97.9 1.7E-06 5.9E-11 89.6 1.1 43 409-453 169-214 (307)
173 2zr9_A Protein RECA, recombina 97.9 1.7E-05 5.9E-10 83.4 8.5 41 410-452 58-98 (349)
174 2x8a_A Nuclear valosin-contain 97.9 4.2E-06 1.4E-10 84.9 3.5 52 396-453 29-80 (274)
175 1qhl_A Protein (cell division 97.9 5.1E-07 1.7E-11 89.7 -3.6 37 417-453 29-65 (227)
176 4dzz_A Plasmid partitioning pr 97.9 3.2E-05 1.1E-09 73.2 9.0 138 416-576 2-142 (206)
177 3uie_A Adenylyl-sulfate kinase 97.9 3.9E-06 1.3E-10 80.3 2.2 51 400-453 12-64 (200)
178 2bdt_A BH3686; alpha-beta prot 97.8 8.4E-06 2.9E-10 76.9 3.5 34 417-453 4-37 (189)
179 2ygr_A Uvrabc system protein A 97.8 2.6E-05 9E-10 91.7 8.3 79 498-584 515-595 (993)
180 4dcu_A GTP-binding protein ENG 97.8 4.8E-05 1.7E-09 82.4 9.2 114 417-578 25-145 (456)
181 2j41_A Guanylate kinase; GMP, 97.8 1.1E-05 3.9E-10 76.5 3.7 33 410-444 3-35 (207)
182 2ged_A SR-beta, signal recogni 97.8 2.9E-05 9.8E-10 72.6 6.4 24 415-438 48-71 (193)
183 1m2o_B GTP-binding protein SAR 97.8 1.3E-05 4.3E-10 75.7 3.7 33 402-437 13-45 (190)
184 2wsm_A Hydrogenase expression/ 97.7 4.6E-05 1.6E-09 73.1 7.6 134 415-577 30-167 (221)
185 3kta_B Chromosome segregation 97.7 7.8E-05 2.7E-09 70.8 9.0 79 500-586 60-141 (173)
186 2r6f_A Excinuclease ABC subuni 97.7 2.9E-05 1E-09 91.1 7.0 78 498-583 498-577 (972)
187 3kta_A Chromosome segregation 97.7 1.8E-05 6E-10 74.0 4.3 38 404-444 18-55 (182)
188 1nrj_A Signal recognition part 97.7 4.1E-05 1.4E-09 69.6 6.3 77 1-77 1-93 (158)
189 3la6_A Tyrosine-protein kinase 97.7 0.00013 4.5E-09 74.4 10.9 148 415-577 92-267 (286)
190 1ega_A Protein (GTP-binding pr 97.7 5E-05 1.7E-09 77.9 7.7 23 416-438 9-31 (301)
191 1nrj_B SR-beta, signal recogni 97.7 9.5E-05 3.3E-09 70.6 9.2 26 414-439 11-36 (218)
192 1f6b_A SAR1; gtpases, N-termin 97.7 1.2E-05 4E-10 76.6 2.6 34 401-437 14-47 (198)
193 1ixz_A ATP-dependent metallopr 97.7 1.4E-05 4.6E-10 79.1 2.9 48 400-453 38-85 (254)
194 1kgd_A CASK, peripheral plasma 97.7 1.5E-05 5.3E-10 75.0 2.8 35 412-448 4-39 (180)
195 4dhe_A Probable GTP-binding pr 97.7 8.1E-05 2.8E-09 71.2 7.9 24 415-438 29-52 (223)
196 1iy2_A ATP-dependent metallopr 97.7 1.5E-05 5.2E-10 80.1 2.9 47 401-453 63-109 (278)
197 1svi_A GTP-binding protein YSX 97.7 0.00015 5.2E-09 67.6 9.5 25 414-438 22-46 (195)
198 3ea0_A ATPase, para family; al 97.6 0.00026 9E-09 68.9 11.4 145 416-576 5-184 (245)
199 2vp4_A Deoxynucleoside kinase; 97.6 1.7E-05 5.8E-10 77.8 2.9 38 410-453 17-54 (230)
200 2vf7_A UVRA2, excinuclease ABC 97.6 6E-05 2.1E-09 87.7 7.7 78 499-584 374-453 (842)
201 3iev_A GTP-binding protein ERA 97.6 0.00011 3.9E-09 75.4 8.8 120 412-577 7-135 (308)
202 2ius_A DNA translocase FTSK; n 97.6 0.00011 3.8E-09 81.0 9.1 48 406-455 160-209 (512)
203 2dyk_A GTP-binding protein; GT 97.6 0.00015 5.1E-09 65.1 8.2 67 499-578 50-122 (161)
204 1jwy_B Dynamin A GTPase domain 97.6 0.0001 3.5E-09 74.9 7.5 23 417-439 26-48 (315)
205 3nwj_A ATSK2; P loop, shikimat 97.6 2E-05 7E-10 79.1 1.9 40 398-439 30-72 (250)
206 3dz8_A RAS-related protein RAB 97.5 0.00044 1.5E-08 64.6 10.9 119 416-578 24-142 (191)
207 3pqc_A Probable GTP-binding pr 97.5 0.00025 8.7E-09 65.6 9.1 23 416-438 24-46 (195)
208 1in4_A RUVB, holliday junction 97.5 9.5E-06 3.3E-10 84.2 -1.0 37 416-452 52-92 (334)
209 4e22_A Cytidylate kinase; P-lo 97.5 1.2E-05 4.2E-10 80.2 -0.2 35 411-447 25-62 (252)
210 3hr8_A Protein RECA; alpha and 97.5 0.00024 8.4E-09 74.9 9.6 40 410-451 58-97 (356)
211 3tau_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 73.3 3.9 28 412-441 7-34 (208)
212 3bfv_A CAPA1, CAPB2, membrane 97.5 0.00068 2.3E-08 68.5 12.5 148 415-577 82-257 (271)
213 1knq_A Gluconate kinase; ALFA/ 97.5 6.6E-05 2.3E-09 69.6 4.6 36 412-453 7-42 (175)
214 1u8z_A RAS-related protein RAL 97.5 0.00021 7.1E-09 64.1 7.8 23 416-438 5-27 (168)
215 2ce7_A Cell division protein F 97.5 0.00022 7.5E-09 78.0 9.1 34 402-439 40-73 (476)
216 1z06_A RAS-related protein RAB 97.5 8E-05 2.7E-09 69.5 4.6 123 414-578 19-141 (189)
217 1ky3_A GTP-binding protein YPT 97.5 9.1E-05 3.1E-09 67.7 4.9 24 415-438 8-31 (182)
218 4ad8_A DNA repair protein RECN 97.5 5.1E-05 1.7E-09 83.5 3.7 62 500-573 392-456 (517)
219 3t61_A Gluconokinase; PSI-biol 97.5 0.00017 5.9E-09 68.6 6.9 25 415-439 18-42 (202)
220 3cio_A ETK, tyrosine-protein k 97.4 0.00029 9.9E-09 72.2 9.0 147 415-577 104-279 (299)
221 1kao_A RAP2A; GTP-binding prot 97.4 6.5E-05 2.2E-09 67.5 3.6 22 416-437 4-25 (167)
222 1fzq_A ADP-ribosylation factor 97.4 0.00023 8E-09 66.3 7.6 23 415-437 16-38 (181)
223 2gj8_A MNME, tRNA modification 97.4 4.4E-05 1.5E-09 70.8 2.6 23 417-439 6-28 (172)
224 1hyq_A MIND, cell division inh 97.4 0.00049 1.7E-08 68.0 10.2 144 417-576 4-174 (263)
225 2hjg_A GTP-binding protein ENG 97.4 0.00022 7.5E-09 76.8 8.2 114 417-578 5-125 (436)
226 1svm_A Large T antigen; AAA+ f 97.4 6.6E-05 2.3E-09 79.8 4.0 57 401-462 157-217 (377)
227 1wf3_A GTP-binding protein; GT 97.4 0.00019 6.5E-09 73.7 7.3 116 417-578 9-131 (301)
228 2a9k_A RAS-related protein RAL 97.4 0.00026 9E-09 64.9 7.5 24 415-438 18-41 (187)
229 2fh5_B SR-beta, signal recogni 97.4 0.00018 6E-09 68.5 6.5 122 416-579 8-130 (214)
230 2xtp_A GTPase IMAP family memb 97.4 0.00033 1.1E-08 69.3 8.6 24 415-438 22-45 (260)
231 1zd9_A ADP-ribosylation factor 97.4 0.00022 7.7E-09 66.6 7.0 116 415-578 22-138 (188)
232 1z0f_A RAB14, member RAS oncog 97.4 0.00014 4.7E-09 66.3 5.4 24 415-438 15-38 (179)
233 3tkl_A RAS-related protein RAB 97.4 0.00031 1E-08 65.4 7.8 23 415-437 16-38 (196)
234 1z0j_A RAB-22, RAS-related pro 97.4 0.00025 8.7E-09 64.0 7.1 23 416-438 7-29 (170)
235 2fn4_A P23, RAS-related protei 97.4 0.00012 4.1E-09 66.9 4.9 24 415-438 9-32 (181)
236 3ney_A 55 kDa erythrocyte memb 97.4 7.7E-05 2.6E-09 72.4 3.8 27 412-440 18-44 (197)
237 1ek0_A Protein (GTP-binding pr 97.4 0.00026 8.8E-09 63.8 6.8 23 416-438 4-26 (170)
238 2zej_A Dardarin, leucine-rich 97.4 0.00017 5.7E-09 67.3 5.6 23 417-439 4-26 (184)
239 1zj6_A ADP-ribosylation factor 97.4 0.0002 6.7E-09 66.7 6.1 115 415-578 16-131 (187)
240 1g3q_A MIND ATPase, cell divis 97.4 0.00097 3.3E-08 64.5 11.3 144 416-577 3-176 (237)
241 3q85_A GTP-binding protein REM 97.4 9.7E-05 3.3E-09 67.0 3.8 23 416-438 3-25 (169)
242 1upt_A ARL1, ADP-ribosylation 97.4 0.00027 9.2E-09 64.0 6.7 23 415-437 7-29 (171)
243 2yvu_A Probable adenylyl-sulfa 97.4 9.7E-05 3.3E-09 69.4 3.8 39 416-454 14-52 (186)
244 3cr8_A Sulfate adenylyltranfer 97.3 6.9E-05 2.3E-09 83.5 3.0 40 410-451 366-407 (552)
245 1h65_A Chloroplast outer envel 97.3 0.00019 6.6E-09 71.9 6.1 49 375-438 14-62 (270)
246 2g6b_A RAS-related protein RAB 97.3 0.00014 4.9E-09 66.5 4.7 24 415-438 10-33 (180)
247 2erx_A GTP-binding protein DI- 97.3 0.00044 1.5E-08 62.3 7.7 22 416-437 4-25 (172)
248 3geh_A MNME, tRNA modification 97.3 0.00025 8.7E-09 77.2 7.2 114 417-578 226-344 (462)
249 2ph1_A Nucleotide-binding prot 97.3 0.00092 3.1E-08 66.5 10.7 147 417-576 20-194 (262)
250 2xau_A PRE-mRNA-splicing facto 97.3 7.2E-05 2.5E-09 86.5 2.8 116 412-547 108-228 (773)
251 2y8e_A RAB-protein 6, GH09086P 97.3 0.00016 5.5E-09 65.9 4.7 22 416-437 15-36 (179)
252 1r2q_A RAS-related protein RAB 97.3 0.00039 1.3E-08 62.6 7.1 23 415-437 6-28 (170)
253 3clv_A RAB5 protein, putative; 97.3 0.00016 5.5E-09 67.0 4.5 24 415-438 7-30 (208)
254 1r8s_A ADP-ribosylation factor 97.3 0.00039 1.3E-08 62.6 6.9 113 417-578 2-115 (164)
255 3q9l_A Septum site-determining 97.3 0.0016 5.6E-08 63.7 11.8 148 416-576 3-185 (260)
256 2nzj_A GTP-binding protein REM 97.3 0.00021 7.3E-09 64.9 5.0 24 415-438 4-27 (175)
257 2qtf_A Protein HFLX, GTP-bindi 97.3 0.0006 2.1E-08 72.0 9.0 46 417-462 181-240 (364)
258 3lxw_A GTPase IMAP family memb 97.3 0.00052 1.8E-08 68.1 8.0 25 414-438 20-44 (247)
259 2aka_B Dynamin-1; fusion prote 97.3 0.001 3.5E-08 66.7 10.3 23 417-439 28-50 (299)
260 2bov_A RAla, RAS-related prote 97.3 0.0005 1.7E-08 64.4 7.4 24 415-438 14-37 (206)
261 2efe_B Small GTP-binding prote 97.2 0.00037 1.2E-08 63.9 6.2 24 415-438 12-35 (181)
262 4eaq_A DTMP kinase, thymidylat 97.2 0.00019 6.5E-09 70.7 4.5 44 403-449 13-59 (229)
263 2h17_A ADP-ribosylation factor 97.2 0.00017 5.7E-09 66.9 3.8 25 414-438 20-44 (181)
264 2x2e_A Dynamin-1; nitration, h 97.2 0.00061 2.1E-08 71.1 8.4 23 417-439 33-55 (353)
265 2p5t_B PEZT; postsegregational 97.2 0.00076 2.6E-08 66.9 8.7 39 414-455 31-69 (253)
266 2oil_A CATX-8, RAS-related pro 97.2 0.0003 1E-08 65.7 5.4 24 415-438 25-48 (193)
267 2f7s_A C25KG, RAS-related prot 97.2 0.0014 4.7E-08 62.4 10.1 129 416-578 26-155 (217)
268 3m6a_A ATP-dependent protease 97.2 0.00015 5E-09 80.6 3.6 46 402-450 98-143 (543)
269 1gvn_B Zeta; postsegregational 97.2 0.0004 1.4E-08 70.8 6.5 61 380-455 10-70 (287)
270 2ce2_X GTPase HRAS; signaling 97.2 0.00027 9.4E-09 63.1 4.7 23 416-438 4-26 (166)
271 1kag_A SKI, shikimate kinase I 97.2 0.00016 5.6E-09 66.6 3.2 24 417-440 6-29 (173)
272 3auy_A DNA double-strand break 97.2 0.0006 2.1E-08 71.7 7.9 51 501-558 277-334 (371)
273 2il1_A RAB12; G-protein, GDP, 97.2 0.0002 6.7E-09 67.3 3.6 22 416-437 27-48 (192)
274 1cp2_A CP2, nitrogenase iron p 97.2 0.0014 4.9E-08 64.8 10.0 39 416-454 2-40 (269)
275 3kjh_A CO dehydrogenase/acetyl 97.2 0.0011 3.8E-08 64.1 9.0 36 418-453 3-38 (254)
276 3iby_A Ferrous iron transport 97.1 0.00079 2.7E-08 67.3 8.0 22 417-438 3-24 (256)
277 1ni3_A YCHF GTPase, YCHF GTP-b 97.1 0.00023 7.9E-09 76.0 4.3 39 410-450 17-67 (392)
278 1zbd_A Rabphilin-3A; G protein 97.1 0.00051 1.7E-08 64.6 6.3 23 416-438 9-31 (203)
279 3t5d_A Septin-7; GTP-binding p 97.1 0.0017 5.7E-08 65.2 10.4 25 413-437 6-30 (274)
280 2p5s_A RAS and EF-hand domain 97.1 0.00042 1.4E-08 65.3 5.6 25 414-438 27-51 (199)
281 3t1o_A Gliding protein MGLA; G 97.1 0.00047 1.6E-08 63.8 5.9 25 416-440 15-39 (198)
282 3kkq_A RAS-related protein M-R 97.1 0.00062 2.1E-08 62.7 6.7 24 415-438 18-41 (183)
283 3end_A Light-independent proto 97.1 0.00075 2.6E-08 68.6 7.5 40 415-454 41-80 (307)
284 3def_A T7I23.11 protein; chlor 97.1 0.00034 1.2E-08 69.8 4.9 23 415-437 36-58 (262)
285 1c1y_A RAS-related protein RAP 97.1 0.00052 1.8E-08 61.7 5.7 22 416-437 4-25 (167)
286 4dsu_A GTPase KRAS, isoform 2B 97.1 0.0002 6.9E-09 65.9 3.0 24 415-438 4-27 (189)
287 2o52_A RAS-related protein RAB 97.1 0.00059 2E-08 64.5 6.3 23 415-437 25-47 (200)
288 2oze_A ORF delta'; para, walke 97.1 0.0011 3.6E-08 67.0 8.5 149 417-576 36-224 (298)
289 1wms_A RAB-9, RAB9, RAS-relate 97.1 0.00051 1.7E-08 62.6 5.6 24 415-438 7-30 (177)
290 1z2a_A RAS-related protein RAB 97.1 0.00026 8.7E-09 63.8 3.4 24 415-438 5-28 (168)
291 3bc1_A RAS-related protein RAB 97.1 0.00035 1.2E-08 64.4 4.4 24 415-438 11-34 (195)
292 2fg5_A RAB-22B, RAS-related pr 97.1 0.00029 9.9E-09 66.0 3.8 24 415-438 23-46 (192)
293 3k9g_A PF-32 protein; ssgcid, 97.1 0.0015 5.1E-08 64.8 9.2 39 415-454 27-66 (267)
294 2hxs_A RAB-26, RAS-related pro 97.1 0.0003 1E-08 64.2 3.8 24 415-438 6-29 (178)
295 2pez_A Bifunctional 3'-phospho 97.1 0.00028 9.7E-09 65.7 3.7 37 412-450 4-41 (179)
296 4dcu_A GTP-binding protein ENG 97.1 0.00075 2.6E-08 73.0 7.5 25 414-438 194-218 (456)
297 2a5j_A RAS-related protein RAB 97.1 0.00048 1.6E-08 64.4 5.2 23 415-437 21-43 (191)
298 2bme_A RAB4A, RAS-related prot 97.1 0.00046 1.6E-08 63.6 5.0 24 415-438 10-33 (186)
299 1ksh_A ARF-like protein 2; sma 97.1 0.00028 9.5E-09 65.3 3.5 23 415-437 18-40 (186)
300 1jjv_A Dephospho-COA kinase; P 97.1 0.00022 7.4E-09 68.0 2.7 33 416-453 3-35 (206)
301 1xjc_A MOBB protein homolog; s 97.0 0.00042 1.4E-08 65.6 4.5 37 415-451 4-40 (169)
302 4afi_A AP-3 complex subunit de 97.0 0.0069 2.3E-07 57.5 12.9 103 4-120 57-166 (173)
303 1g16_A RAS-related protein SEC 97.0 0.00049 1.7E-08 62.0 4.8 23 416-438 4-26 (170)
304 2gf0_A GTP-binding protein DI- 97.0 0.0018 6E-08 60.3 8.7 23 415-437 8-30 (199)
305 3gee_A MNME, tRNA modification 97.0 0.00028 9.6E-09 77.2 3.6 118 417-578 235-357 (476)
306 1w1w_A Structural maintenance 97.0 0.00064 2.2E-08 72.8 6.3 81 500-587 329-412 (430)
307 2h5e_A Peptide chain release f 97.0 0.00063 2.1E-08 75.4 6.4 68 497-578 81-148 (529)
308 1cke_A CK, MSSA, protein (cyti 97.0 0.00015 5.2E-09 69.8 1.3 32 417-448 7-41 (227)
309 4a1f_A DNAB helicase, replicat 97.0 0.0019 6.6E-08 67.5 9.8 49 403-453 36-84 (338)
310 2cxx_A Probable GTP-binding pr 97.0 0.00097 3.3E-08 61.5 6.7 22 417-438 3-24 (190)
311 2qu8_A Putative nucleolar GTP- 97.0 0.0016 5.4E-08 63.0 8.5 23 415-437 29-51 (228)
312 3bh0_A DNAB-like replicative h 97.0 0.0032 1.1E-07 64.8 11.3 51 400-452 55-105 (315)
313 2bcg_Y Protein YP2, GTP-bindin 97.0 0.00027 9.4E-09 66.7 2.9 23 416-438 9-31 (206)
314 3cph_A RAS-related protein SEC 97.0 0.00056 1.9E-08 64.5 5.0 23 415-437 20-42 (213)
315 4bas_A ADP-ribosylation factor 97.0 0.00058 2E-08 63.6 5.1 24 414-437 16-39 (199)
316 1np6_A Molybdopterin-guanine d 97.0 0.00048 1.6E-08 65.3 4.5 34 417-450 8-41 (174)
317 2h57_A ADP-ribosylation factor 97.0 0.00025 8.6E-09 66.1 2.5 25 415-439 21-45 (190)
318 2b6h_A ADP-ribosylation factor 97.0 0.0014 4.6E-08 61.7 7.6 24 414-437 28-51 (192)
319 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00043 1.5E-08 63.6 3.9 25 415-439 23-47 (149)
320 2j1l_A RHO-related GTP-binding 97.0 0.00048 1.6E-08 66.0 4.4 23 415-437 34-56 (214)
321 3i8s_A Ferrous iron transport 97.0 0.0015 5.1E-08 65.8 8.1 23 416-438 4-26 (274)
322 3con_A GTPase NRAS; structural 97.0 0.00066 2.2E-08 63.0 5.1 24 415-438 21-44 (190)
323 1vg8_A RAS-related protein RAB 97.0 0.00015 5.1E-09 68.3 0.7 24 415-438 8-31 (207)
324 1w1w_A Structural maintenance 97.0 0.00039 1.3E-08 74.5 4.0 32 410-443 23-54 (430)
325 4gzl_A RAS-related C3 botulinu 97.0 0.00056 1.9E-08 65.0 4.7 24 414-437 29-52 (204)
326 2qt1_A Nicotinamide riboside k 97.0 0.00044 1.5E-08 66.0 4.0 29 410-440 18-46 (207)
327 2ew1_A RAS-related protein RAB 97.0 0.00058 2E-08 65.2 4.7 24 415-438 26-49 (201)
328 1wcv_1 SOJ, segregation protei 96.9 0.00094 3.2E-08 66.1 6.3 148 416-576 7-181 (257)
329 2z43_A DNA repair and recombin 96.9 0.0015 5.2E-08 67.4 8.1 95 347-452 49-150 (324)
330 3q72_A GTP-binding protein RAD 96.9 0.0011 3.7E-08 59.8 6.1 22 417-438 4-25 (166)
331 1m7g_A Adenylylsulfate kinase; 96.9 0.00042 1.5E-08 66.6 3.5 37 412-450 24-62 (211)
332 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.001 3.5E-08 66.4 6.4 41 415-455 4-44 (260)
333 2afh_E Nitrogenase iron protei 96.9 0.0037 1.3E-07 62.8 10.5 39 416-454 3-41 (289)
334 1fnn_A CDC6P, cell division co 96.9 0.004 1.4E-07 64.3 11.0 26 417-442 46-71 (389)
335 1mky_A Probable GTP-binding pr 96.9 0.0017 5.9E-08 69.8 8.5 21 417-437 3-23 (439)
336 2q6t_A DNAB replication FORK h 96.9 0.0063 2.2E-07 65.5 13.0 50 401-452 188-238 (444)
337 3reg_A RHO-like small GTPase; 96.9 0.00025 8.7E-09 66.3 1.7 24 415-438 23-46 (194)
338 2gf9_A RAS-related protein RAB 96.9 0.00019 6.5E-09 66.9 0.8 24 415-438 22-45 (189)
339 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00068 2.3E-08 62.9 4.6 24 415-438 7-30 (184)
340 2qpt_A EH domain-containing pr 96.9 0.00095 3.2E-08 74.3 6.4 23 416-438 66-88 (550)
341 2hup_A RAS-related protein RAB 96.9 0.0022 7.4E-08 60.7 8.0 23 415-437 29-51 (201)
342 2fv8_A H6, RHO-related GTP-bin 96.9 0.00037 1.3E-08 66.2 2.6 23 415-437 25-47 (207)
343 3k1j_A LON protease, ATP-depen 96.9 0.00039 1.3E-08 78.0 3.1 60 400-461 47-111 (604)
344 1x3s_A RAS-related protein RAB 96.9 0.0011 3.8E-08 61.3 5.7 23 416-438 16-38 (195)
345 1v5w_A DMC1, meiotic recombina 96.8 0.0027 9.2E-08 66.2 9.1 94 347-451 64-164 (343)
346 3zvr_A Dynamin-1; hydrolase, D 96.8 0.0025 8.6E-08 73.4 9.5 73 499-579 151-232 (772)
347 2hjg_A GTP-binding protein ENG 96.8 0.002 6.8E-08 69.2 8.2 25 414-438 174-198 (436)
348 1ukz_A Uridylate kinase; trans 96.8 0.0016 5.5E-08 61.6 6.6 28 412-439 12-39 (203)
349 3bwd_D RAC-like GTP-binding pr 96.8 0.0005 1.7E-08 63.0 2.9 23 415-437 8-30 (182)
350 4djt_A GTP-binding nuclear pro 96.8 0.00013 4.3E-09 69.7 -1.3 23 415-437 11-33 (218)
351 2yc2_C IFT27, small RAB-relate 96.8 0.00082 2.8E-08 62.9 4.3 23 416-438 21-43 (208)
352 3cbq_A GTP-binding protein REM 96.8 0.00076 2.6E-08 63.8 3.9 23 415-437 23-45 (195)
353 2hf9_A Probable hydrogenase ni 96.8 0.00099 3.4E-08 63.9 4.8 39 415-454 38-76 (226)
354 2atv_A RERG, RAS-like estrogen 96.8 0.0018 6.2E-08 60.6 6.4 24 415-438 28-51 (196)
355 1gwn_A RHO-related GTP-binding 96.8 0.00095 3.2E-08 63.8 4.5 24 415-438 28-51 (205)
356 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00092 3.1E-08 73.5 4.9 47 401-453 54-100 (499)
357 1sxj_C Activator 1 40 kDa subu 96.8 0.00025 8.5E-09 73.3 0.4 44 402-445 33-76 (340)
358 3sjy_A Translation initiation 96.8 0.0014 4.7E-08 69.8 6.1 134 415-578 8-143 (403)
359 3p26_A Elongation factor 1 alp 96.7 0.0016 5.5E-08 71.0 6.8 69 497-578 110-185 (483)
360 3tr5_A RF-3, peptide chain rel 96.7 0.00056 1.9E-08 75.8 3.1 67 497-577 81-147 (528)
361 2fu5_C RAS-related protein RAB 96.7 0.00099 3.4E-08 61.3 4.3 22 416-437 9-30 (183)
362 2j69_A Bacterial dynamin-like 96.7 0.0051 1.7E-07 70.2 11.0 69 498-579 174-245 (695)
363 3cwq_A Para family chromosome 96.7 0.004 1.4E-07 59.9 8.6 128 417-577 2-133 (209)
364 2i1q_A DNA repair and recombin 96.7 0.005 1.7E-07 63.1 9.7 107 318-438 13-121 (322)
365 1dar_A EF-G, elongation factor 96.7 0.0027 9.2E-08 72.5 8.0 68 497-578 76-143 (691)
366 3qks_A DNA double-strand break 96.7 0.001 3.5E-08 64.1 3.9 26 415-440 23-48 (203)
367 1wb1_A Translation elongation 96.6 0.0044 1.5E-07 67.7 9.3 68 497-578 72-139 (482)
368 2xex_A Elongation factor G; GT 96.6 0.0019 6.6E-08 73.7 6.6 68 497-578 74-141 (693)
369 2z4s_A Chromosomal replication 96.6 0.0049 1.7E-07 66.4 9.5 27 416-442 131-157 (440)
370 1gtv_A TMK, thymidylate kinase 96.6 0.00063 2.1E-08 64.7 2.2 33 417-449 2-34 (214)
371 2qag_A Septin-2, protein NEDD5 96.6 0.0016 5.6E-08 68.4 5.6 25 417-441 39-63 (361)
372 4fcw_A Chaperone protein CLPB; 96.6 0.0035 1.2E-07 63.1 7.8 37 417-453 49-85 (311)
373 1byi_A Dethiobiotin synthase; 96.6 0.007 2.4E-07 58.0 9.6 33 417-449 3-36 (224)
374 2gco_A H9, RHO-related GTP-bin 96.6 0.0006 2.1E-08 64.4 1.8 23 415-437 25-47 (201)
375 1d2e_A Elongation factor TU (E 96.6 0.0038 1.3E-07 66.3 8.1 128 416-578 4-133 (397)
376 1lnz_A SPO0B-associated GTP-bi 96.6 0.0028 9.6E-08 66.3 7.0 74 498-578 206-288 (342)
377 3llu_A RAS-related GTP-binding 96.6 0.0013 4.4E-08 61.9 4.0 72 498-577 69-142 (196)
378 2if2_A Dephospho-COA kinase; a 96.6 0.001 3.5E-08 63.0 3.3 22 416-437 2-23 (204)
379 2x77_A ADP-ribosylation factor 96.6 0.00025 8.4E-09 66.0 -1.1 22 415-436 22-43 (189)
380 3o47_A ADP-ribosylation factor 96.6 0.001 3.6E-08 68.9 3.5 117 414-578 164-280 (329)
381 2c78_A Elongation factor TU-A; 96.6 0.0027 9.1E-08 67.5 6.7 130 416-578 12-142 (405)
382 3umf_A Adenylate kinase; rossm 96.5 0.0027 9.4E-08 62.3 6.2 39 414-456 28-66 (217)
383 2qor_A Guanylate kinase; phosp 96.5 0.0011 3.7E-08 63.4 3.1 27 412-440 11-37 (204)
384 1y63_A LMAJ004144AAA protein; 96.5 0.0014 4.9E-08 61.5 3.8 32 405-438 2-33 (184)
385 3iqw_A Tail-anchored protein t 96.5 0.026 8.9E-07 58.8 13.7 39 415-453 16-54 (334)
386 3th5_A RAS-related C3 botulinu 95.5 0.00042 1.4E-08 65.4 0.0 24 414-437 29-52 (204)
387 2wji_A Ferrous iron transport 96.5 0.0013 4.3E-08 60.2 3.2 24 416-439 4-27 (165)
388 3zq6_A Putative arsenical pump 96.5 0.016 5.6E-07 59.6 11.8 38 416-453 15-52 (324)
389 3bgw_A DNAB-like replicative h 96.5 0.012 4E-07 63.7 11.1 51 401-453 185-235 (444)
390 3j2k_7 ERF3, eukaryotic polype 96.5 0.0024 8.2E-08 68.9 5.7 39 497-541 94-132 (439)
391 2w58_A DNAI, primosome compone 96.5 0.002 6.7E-08 61.0 4.4 36 416-451 55-90 (202)
392 2rdo_7 EF-G, elongation factor 96.5 0.0065 2.2E-07 69.5 9.4 68 497-578 81-148 (704)
393 1u94_A RECA protein, recombina 96.4 0.0076 2.6E-07 63.4 9.3 40 410-451 60-99 (356)
394 1xp8_A RECA protein, recombina 96.4 0.014 4.6E-07 61.7 10.9 42 410-453 71-112 (366)
395 2wjg_A FEOB, ferrous iron tran 96.4 0.0017 5.8E-08 59.9 3.4 24 415-438 7-30 (188)
396 1ly1_A Polynucleotide kinase; 96.4 0.0019 6.6E-08 59.3 3.6 37 415-455 2-38 (181)
397 2xj4_A MIPZ; replication, cell 96.4 0.0054 1.9E-07 61.8 7.2 114 416-538 5-136 (286)
398 1zun_B Sulfate adenylate trans 96.3 0.0099 3.4E-07 63.8 9.5 68 498-578 104-171 (434)
399 3cpj_B GTP-binding protein YPT 96.3 0.0025 8.5E-08 61.2 4.3 23 416-438 14-36 (223)
400 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0018 6.3E-08 68.2 3.5 36 405-440 14-49 (359)
401 3gj0_A GTP-binding nuclear pro 96.3 0.0012 4.3E-08 63.1 2.0 22 415-436 15-36 (221)
402 2zts_A Putative uncharacterize 96.3 0.012 4.2E-07 56.7 9.1 41 410-452 27-68 (251)
403 3r7w_A Gtpase1, GTP-binding pr 96.2 0.0078 2.7E-07 61.5 7.7 121 417-578 5-129 (307)
404 3q3j_B RHO-related GTP-binding 96.2 0.0016 5.6E-08 62.4 2.4 22 416-437 28-49 (214)
405 3kb2_A SPBC2 prophage-derived 96.2 0.0026 8.7E-08 58.0 3.6 23 417-439 3-25 (173)
406 2r8r_A Sensor protein; KDPD, P 96.2 0.0018 6.3E-08 64.1 2.6 41 412-453 4-44 (228)
407 1uf9_A TT1252 protein; P-loop, 96.2 0.0022 7.4E-08 60.3 3.0 26 413-438 6-31 (203)
408 3ug7_A Arsenical pump-driving 96.2 0.029 9.9E-07 58.5 11.9 38 416-453 27-64 (349)
409 1xzp_A Probable tRNA modificat 96.2 0.001 3.5E-08 72.9 0.8 23 416-438 244-266 (482)
410 1mky_A Probable GTP-binding pr 96.2 0.0032 1.1E-07 67.7 4.7 38 414-451 179-228 (439)
411 3b9p_A CG5977-PA, isoform A; A 96.2 0.011 3.9E-07 59.1 8.4 24 416-439 55-78 (297)
412 3cm0_A Adenylate kinase; ATP-b 96.1 0.0029 1E-07 58.7 3.7 23 417-439 6-28 (186)
413 3l0i_B RAS-related protein RAB 96.1 0.00039 1.3E-08 65.5 -2.5 22 415-436 33-54 (199)
414 3bos_A Putative DNA replicatio 96.1 0.0041 1.4E-07 59.4 4.6 37 417-453 54-90 (242)
415 2rhm_A Putative kinase; P-loop 96.1 0.0034 1.2E-07 58.4 3.8 25 415-439 5-29 (193)
416 1nks_A Adenylate kinase; therm 96.1 0.0043 1.5E-07 57.5 4.5 33 417-449 3-35 (194)
417 1kht_A Adenylate kinase; phosp 96.0 0.0036 1.2E-07 58.0 3.7 25 417-441 5-29 (192)
418 3cmw_A Protein RECA, recombina 96.0 0.12 4.1E-06 64.3 17.8 41 410-452 729-769 (1706)
419 1tev_A UMP-CMP kinase; ploop, 96.0 0.0042 1.4E-07 57.6 3.9 25 415-439 3-27 (196)
420 3k53_A Ferrous iron transport 96.0 0.0097 3.3E-07 59.4 6.7 24 416-439 4-27 (271)
421 3lvq_E ARF-GAP with SH3 domain 95.9 0.0037 1.3E-07 67.9 3.8 113 416-577 323-436 (497)
422 1qhx_A CPT, protein (chloramph 95.9 0.0039 1.3E-07 57.5 3.4 25 416-440 4-28 (178)
423 2elf_A Protein translation elo 95.9 0.012 4.2E-07 62.0 7.6 20 417-436 23-42 (370)
424 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0047 1.6E-07 65.1 4.4 34 417-450 37-70 (392)
425 2jaq_A Deoxyguanosine kinase; 95.9 0.0042 1.4E-07 58.2 3.6 24 417-440 2-25 (205)
426 3fkq_A NTRC-like two-domain pr 95.9 0.022 7.6E-07 59.7 9.5 40 413-452 141-181 (373)
427 3ez2_A Plasmid partition prote 95.9 0.013 4.4E-07 61.9 7.7 41 414-454 107-154 (398)
428 3pg5_A Uncharacterized protein 95.9 0.012 4.1E-07 61.7 7.3 38 417-454 3-41 (361)
429 4ad8_A DNA repair protein RECN 95.9 0.0019 6.6E-08 70.9 1.3 35 402-439 50-84 (517)
430 3llm_A ATP-dependent RNA helic 95.9 0.0099 3.4E-07 58.0 6.1 24 412-437 75-98 (235)
431 1vht_A Dephospho-COA kinase; s 95.8 0.0048 1.6E-07 59.2 3.7 23 415-437 4-26 (218)
432 2plr_A DTMP kinase, probable t 95.8 0.007 2.4E-07 57.0 4.8 30 416-446 5-34 (213)
433 3io3_A DEHA2D07832P; chaperone 95.8 0.044 1.5E-06 57.4 11.2 38 416-453 19-58 (348)
434 2z0h_A DTMP kinase, thymidylat 95.8 0.007 2.4E-07 56.4 4.6 31 417-447 2-32 (197)
435 3dpu_A RAB family protein; roc 95.8 0.012 4.1E-07 64.8 7.1 68 497-578 97-164 (535)
436 3lw7_A Adenylate kinase relate 95.8 0.0048 1.6E-07 55.8 3.1 19 417-435 3-21 (179)
437 1uj2_A Uridine-cytidine kinase 95.7 0.0073 2.5E-07 59.6 4.7 28 412-439 19-46 (252)
438 2c95_A Adenylate kinase 1; tra 95.7 0.0055 1.9E-07 57.2 3.6 24 416-439 10-33 (196)
439 3auy_A DNA double-strand break 95.7 0.0047 1.6E-07 64.9 3.4 22 416-437 26-47 (371)
440 1qf9_A UMP/CMP kinase, protein 95.7 0.0061 2.1E-07 56.4 3.8 25 415-439 6-30 (194)
441 3ice_A Transcription terminati 95.7 0.0077 2.6E-07 64.3 5.0 35 405-441 166-200 (422)
442 1q3t_A Cytidylate kinase; nucl 95.7 0.0064 2.2E-07 59.4 4.1 25 415-439 16-40 (236)
443 2bwj_A Adenylate kinase 5; pho 95.7 0.0059 2E-07 57.1 3.6 23 417-439 14-36 (199)
444 2ze6_A Isopentenyl transferase 95.7 0.0061 2.1E-07 60.6 3.8 23 417-439 3-25 (253)
445 3trf_A Shikimate kinase, SK; a 95.7 0.0062 2.1E-07 56.5 3.7 23 417-439 7-29 (185)
446 3ez9_A Para; DNA binding, wing 95.7 0.0076 2.6E-07 63.8 4.7 41 414-454 110-157 (403)
447 1nn5_A Similar to deoxythymidy 95.7 0.0079 2.7E-07 56.9 4.4 31 416-446 10-40 (215)
448 3r20_A Cytidylate kinase; stru 95.6 0.0066 2.3E-07 60.2 3.7 25 415-439 9-33 (233)
449 1via_A Shikimate kinase; struc 95.6 0.0058 2E-07 56.5 3.0 23 417-439 6-28 (175)
450 2b8t_A Thymidine kinase; deoxy 95.6 0.017 5.9E-07 56.8 6.5 36 412-449 11-46 (223)
451 2orw_A Thymidine kinase; TMTK, 95.6 0.012 4E-07 55.9 5.1 35 413-449 3-37 (184)
452 1g7s_A Translation initiation 95.5 0.0071 2.4E-07 67.9 4.2 66 499-578 71-136 (594)
453 2qby_A CDC6 homolog 1, cell di 95.5 0.0077 2.6E-07 61.7 4.1 28 415-442 45-72 (386)
454 2cdn_A Adenylate kinase; phosp 95.5 0.0087 3E-07 56.6 4.1 28 412-439 17-44 (201)
455 1a7j_A Phosphoribulokinase; tr 95.5 0.0045 1.5E-07 63.1 2.2 40 415-454 5-44 (290)
456 3iij_A Coilin-interacting nucl 95.5 0.0076 2.6E-07 55.8 3.6 23 417-439 13-35 (180)
457 2v54_A DTMP kinase, thymidylat 95.5 0.007 2.4E-07 56.9 3.3 23 417-439 6-28 (204)
458 3cmu_A Protein RECA, recombina 95.5 0.024 8.4E-07 71.3 9.0 41 410-452 1424-1464(2050)
459 1kk1_A EIF2gamma; initiation o 95.5 0.021 7.3E-07 60.6 7.5 23 416-438 11-33 (410)
460 2wwf_A Thymidilate kinase, put 95.5 0.0098 3.4E-07 56.2 4.4 31 416-446 11-41 (212)
461 2ywe_A GTP-binding protein LEP 95.5 0.018 6.1E-07 64.7 7.1 67 498-578 73-139 (600)
462 1jny_A EF-1-alpha, elongation 95.5 0.022 7.5E-07 61.1 7.6 23 416-438 7-29 (435)
463 2woj_A ATPase GET3; tail-ancho 95.5 0.11 3.7E-06 54.4 12.7 37 417-453 20-58 (354)
464 1ex7_A Guanylate kinase; subst 95.5 0.0067 2.3E-07 58.1 3.1 23 417-439 3-25 (186)
465 1lv7_A FTSH; alpha/beta domain 95.4 0.0082 2.8E-07 59.0 3.7 35 417-453 47-81 (257)
466 2ohf_A Protein OLA1, GTP-bindi 95.4 0.0068 2.3E-07 64.8 3.2 22 417-438 24-45 (396)
467 1l8q_A Chromosomal replication 95.4 0.0075 2.6E-07 61.5 3.4 35 417-451 39-73 (324)
468 1jbk_A CLPB protein; beta barr 95.4 0.014 4.7E-07 53.1 4.8 26 416-441 44-69 (195)
469 2pbr_A DTMP kinase, thymidylat 95.4 0.011 3.8E-07 54.8 4.2 30 417-446 2-31 (195)
470 1zak_A Adenylate kinase; ATP:A 95.3 0.0077 2.6E-07 57.9 3.0 26 415-440 5-30 (222)
471 3tlx_A Adenylate kinase 2; str 95.3 0.0095 3.2E-07 58.7 3.6 38 414-455 28-65 (243)
472 1zd8_A GTP:AMP phosphotransfer 95.3 0.0088 3E-07 57.8 3.3 25 415-439 7-31 (227)
473 3cb4_D GTP-binding protein LEP 95.2 0.013 4.4E-07 65.8 5.0 67 498-578 71-137 (599)
474 3qq5_A Small GTP-binding prote 95.2 0.0095 3.2E-07 64.1 3.7 25 413-437 32-56 (423)
475 4edh_A DTMP kinase, thymidylat 95.2 0.014 4.7E-07 56.9 4.6 35 412-448 5-39 (213)
476 3izy_P Translation initiation 95.2 0.0032 1.1E-07 69.8 0.1 114 415-577 4-117 (537)
477 2vli_A Antibiotic resistance p 95.2 0.0064 2.2E-07 56.1 2.1 25 415-439 5-29 (183)
478 3zvl_A Bifunctional polynucleo 95.2 0.044 1.5E-06 58.5 8.8 28 412-439 255-282 (416)
479 4dkx_A RAS-related protein RAB 95.2 0.018 6.1E-07 56.0 5.2 22 416-437 14-35 (216)
480 3ake_A Cytidylate kinase; CMP 95.1 0.011 3.9E-07 55.5 3.6 23 417-439 4-26 (208)
481 1q57_A DNA primase/helicase; d 95.1 0.028 9.5E-07 61.3 7.1 51 401-453 230-281 (503)
482 3d3q_A TRNA delta(2)-isopenten 95.1 0.015 5.2E-07 60.8 4.8 33 416-453 8-40 (340)
483 2f6r_A COA synthase, bifunctio 95.1 0.012 4.1E-07 59.5 3.9 26 412-437 72-97 (281)
484 4tmk_A Protein (thymidylate ki 95.1 0.017 5.7E-07 56.3 4.7 33 413-447 3-36 (213)
485 2lkc_A Translation initiation 95.1 0.012 4E-07 53.5 3.3 23 415-437 8-30 (178)
486 1aky_A Adenylate kinase; ATP:A 95.1 0.012 4.2E-07 56.4 3.7 24 416-439 5-28 (220)
487 3mca_A HBS1, elongation factor 95.0 0.0029 9.8E-08 71.0 -1.3 24 416-439 178-201 (592)
488 1z08_A RAS-related protein RAB 94.9 0.014 4.9E-07 52.3 3.5 23 416-438 7-29 (170)
489 3d8b_A Fidgetin-like protein 1 94.9 0.26 8.7E-06 51.2 13.5 25 415-439 117-141 (357)
490 3lv8_A DTMP kinase, thymidylat 94.9 0.018 6.2E-07 57.1 4.5 29 417-445 29-57 (236)
491 1e6c_A Shikimate kinase; phosp 94.9 0.013 4.3E-07 53.6 3.1 23 417-439 4-26 (173)
492 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.071 2.4E-06 55.5 9.1 27 410-438 120-146 (331)
493 2p65_A Hypothetical protein PF 94.9 0.019 6.4E-07 52.3 4.2 25 417-441 45-69 (187)
494 1zo1_I IF2, translation initia 94.9 0.0057 1.9E-07 67.3 0.8 24 415-438 4-27 (501)
495 1s0u_A EIF-2-gamma, translatio 94.9 0.047 1.6E-06 58.0 7.9 24 415-438 8-31 (408)
496 3b1v_A Ferrous iron uptake tra 94.9 0.013 4.5E-07 59.0 3.4 24 415-438 3-26 (272)
497 3sr0_A Adenylate kinase; phosp 94.9 0.014 4.7E-07 56.6 3.3 36 417-456 2-37 (206)
498 3cf0_A Transitional endoplasmi 94.8 0.015 5.2E-07 59.0 3.7 38 411-452 47-84 (301)
499 1sxj_D Activator 1 41 kDa subu 94.8 0.012 4.1E-07 60.0 2.9 29 412-440 55-83 (353)
500 1moz_A ARL1, ADP-ribosylation 94.8 0.0092 3.1E-07 54.5 1.8 23 414-436 17-39 (183)
No 1
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=100.00 E-value=1.4e-43 Score=339.68 Aligned_cols=138 Identities=33% Similarity=0.546 Sum_probs=103.8
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccCCCceeecCCCCceeeeeEeecccceEEEEEeccccc
Q 007747 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (591)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~v~leer~~~~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l~ 80 (591)
|.|+|+|||||||||||++ ++++++++|||+||++||||||+++++|.|| +|+|||+|+||||||||||||+|||
T Consensus 10 ~~D~~~IfTkGGvVLWs~~-~~~~~~~~~IN~LIr~VlLEER~~~~~y~~d----~ytlkW~l~NEl~LVFVvVYQ~iL~ 84 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQ-GVSDSCTGPVNALIRSVLLQERGGNNSFTHE----ALTLKYKLDNQFELVFVVGFQKILT 84 (185)
T ss_dssp SCSEEEEEETTSBEEEEEB-TTTBSCCCHHHHHHHHTGGGC-------CCC----CCEEEEEEETTTTEEEEEEESCGGG
T ss_pred ceeEEEEEeCCeEEEEeec-CCcccccchHHHHHHHhhhccccCCCceeEc----CeEEEEEEeccCCEEEEEEEccccc
Confidence 8999999999999999953 4456899999999999999999999999999 9999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhcCCcCC---------CccchHHHHHHHHHHHHHHHHHhhcccccCCCCCcccccCCCC
Q 007747 81 LLYVDDLLAMMKQSFSEIYDPKRT---------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQL 147 (591)
Q Consensus 81 l~yvd~ll~~v~~~f~~~y~~~~~---------~~~~f~~~f~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (591)
|+|||+||++|++.|+++|++.+. .+.+||++|+++|+++|..++.++ ++.|+ +|+++.++++
T Consensus 85 L~YiD~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~-~k~mr---~fees~ks~k 156 (185)
T 2fh5_A 85 LTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA-PTTMK---KFEDSEKAKK 156 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC----------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhh-HHhhc---cHhhhhhhhh
Confidence 999999999999999999977632 233799999999999999876554 66675 6889988877
No 2
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.98 E-value=5.5e-33 Score=291.40 Aligned_cols=252 Identities=42% Similarity=0.666 Sum_probs=214.3
Q ss_pred hccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccc
Q 007747 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDIL 403 (591)
Q Consensus 324 l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL 403 (591)
..+...++++++++++++|+++|+++||+.+++.+|++.+++.+.++++..+.++.+.+..++.++|.+++.+....+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 120 (328)
T 3e70_C 41 RILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLI 120 (328)
T ss_dssp -CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCSSCCCHH
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCccccchh
Confidence 34577999999999999999999999999999999999999999998887777788899999999999999876433321
Q ss_pred cccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHH
Q 007747 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPA 483 (591)
Q Consensus 404 ~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~ 483 (591)
. ......+ |.+++|+||||||||||+++|++++.|++|+|.+.++|+||.++++|++.+.+.++++++...++.++.
T Consensus 121 ~-~~~~~~~--g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~ 197 (328)
T 3e70_C 121 E-EIRKAEK--PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPA 197 (328)
T ss_dssp H-HHHSSCS--SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHH
T ss_pred h-hcccCCC--CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHH
Confidence 1 1112234 459999999999999999999999999999999999999999999999999999999988877888888
Q ss_pred HHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007747 484 IVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563 (591)
Q Consensus 484 ~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~ 563 (591)
..+.+++......+++.+++||+|+++++..++.+|..+..+..|+..++|.++++|+|...++..|++.+
T Consensus 198 ~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~--------- 268 (328)
T 3e70_C 198 AVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAV--------- 268 (328)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhc---------
Confidence 88888888777778899999999999888889999988888888998887788999999999887775443
Q ss_pred ccceEEEeccccccCCcEEE-EEeccc
Q 007747 564 QLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 564 ~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
.++++|+||+|+ +.++|+ +++++.
T Consensus 269 -~it~iilTKlD~-~a~~G~~l~~~~~ 293 (328)
T 3e70_C 269 -KIDGIILTKLDA-DARGGAALSISYV 293 (328)
T ss_dssp -CCCEEEEECGGG-CSCCHHHHHHHHH
T ss_pred -CCCEEEEeCcCC-ccchhHHHHHHHH
Confidence 799999999999 567777 776653
No 3
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.97 E-value=1.8e-31 Score=289.35 Aligned_cols=255 Identities=24% Similarity=0.392 Sum_probs=224.1
Q ss_pred chHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007747 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (591)
Q Consensus 315 g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 394 (591)
..|++.|+++.|...||++++++.+++|+++|++++|+.+++..|++.+++.+.+.++....+..+.+.+++.++|.+++
T Consensus 8 ~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~L 87 (443)
T 3dm5_A 8 KALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87 (443)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999998887766555667788999999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhccccee
Q 007747 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (591)
Q Consensus 395 ~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~ 474 (591)
.+... . +.+ .+.|++++|+|++||||||++++||.++...+.+|.++++|+||+++++|+..+++..+++++
T Consensus 88 ~~~~~-~----~~~---~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 88 GTEAK-P----IEI---KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp TSSCC-C----CCC---CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred cCccc-c----ccc---CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 86321 1 111 245789999999999999999999999998889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHH
Q 007747 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L 554 (591)
......++..++.++++.+...++|++++||+|+.+....++.+|.++.....|+.++||-+++.|+++..+...|++.
T Consensus 160 ~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~- 238 (443)
T 3dm5_A 160 GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEA- 238 (443)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHS-
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhh-
Confidence 8777888999989999988888899999999999998889999999988888999999999999999999888777543
Q ss_pred HHhhcCCCCccceEEEeccccccCCcEEE-EEecc
Q 007747 555 ADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCR 588 (591)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~ 588 (591)
..++++|+||+|+. .++|+ +++.+
T Consensus 239 ---------~~i~gVIlTKlD~~-~~gG~~ls~~~ 263 (443)
T 3dm5_A 239 ---------TPIGSIIVTKLDGS-AKGGGALSAVA 263 (443)
T ss_dssp ---------CTTEEEEEECCSSC-SSHHHHHHHHH
T ss_pred ---------CCCeEEEEECCCCc-ccccHHHHHHH
Confidence 37899999999995 56666 66654
No 4
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.97 E-value=1.2e-31 Score=278.03 Aligned_cols=235 Identities=29% Similarity=0.411 Sum_probs=190.0
Q ss_pred ccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccc
Q 007747 325 AGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILR 404 (591)
Q Consensus 325 ~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~ 404 (591)
.|.+.++ +++.+++++++|+++||+.+++.+|++.+++.+.+.++.+ .+.+.+++.++|.+++.+... +.
T Consensus 22 ~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~---~~ 91 (302)
T 3b9q_A 22 LFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLEMLAKKNS---KT 91 (302)
T ss_dssp TTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCS----HHHHHHHHHHHHHHHHCC--C---CC
T ss_pred cCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHHHhCCccc---cc
Confidence 3566666 6789999999999999999999999999999888776543 457888999999999976432 34
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC-CCHH
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE-KDPA 483 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~-~d~~ 483 (591)
+++|.+.+|+ +++|+||||||||||+++|||++.|++|+|.+.++|+||.++++|++.+.+..+++++..... .++.
T Consensus 92 ~l~~~~~~g~--vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 92 ELQLGFRKPA--VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp SCCCCSSSCE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccCCCc--EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 6788887887 999999999999999999999999999999999999999999999999887778887665555 6777
Q ss_pred HHHHHHHHHhhhcCCCcchhccchhHH-----------HHHHHHHHHHhchhcCCCc--EEEEEecccCCCCHHHHHHHH
Q 007747 484 IVAKEAIQEATRNGSDVVLVDTAGRMQ-----------DNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 484 ~~a~~al~~~~~~~~d~vliDtSGg~~-----------qr~~LaraL~kl~~~~~Pd--lILLVDEPt~GlD~~~q~~~f 550 (591)
..+.+.+.++...+.+..++|++|+.+ |++.++++|. .+|+ ++++ | ||+|+|+..+...|
T Consensus 170 ~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~-----~~P~e~lLvL-D-ptsglD~~~~~~~~ 242 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS-----GAPNEILLVL-D-GNTGLNMLPQAREF 242 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTST-----TCCSEEEEEE-E-GGGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhc-----cCCCeeEEEE-e-CCCCcCHHHHHHHH
Confidence 777777776555567778889988753 5666666666 7898 6666 8 99999999887655
Q ss_pred HHHHHHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
++. .+++++|+||+|+. .++|. +++++.
T Consensus 243 ~~~----------~g~t~iiiThlD~~-~~~g~~l~~~~~ 271 (302)
T 3b9q_A 243 NEV----------VGITGLILTKLDGS-ARGGCVVSVVEE 271 (302)
T ss_dssp HHH----------TCCCEEEEECCSSC-SCTHHHHHHHHH
T ss_pred HHh----------cCCCEEEEeCCCCC-CccChheehHHH
Confidence 432 37899999999995 67777 887654
No 5
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.97 E-value=3e-31 Score=281.28 Aligned_cols=230 Identities=30% Similarity=0.445 Sum_probs=190.8
Q ss_pred hchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccccccc
Q 007747 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQ 412 (591)
Q Consensus 333 ~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~ 412 (591)
-++++.+++++++|+++||+.+++.+|++.+++.+.+.++.+ .+.+..++.++|.+++.+... ...++|.+.+
T Consensus 84 ~~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~---~~~l~l~~~~ 156 (359)
T 2og2_A 84 AETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLEMLAKKNS---KTELQLGFRK 156 (359)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCS----HHHHHHHHHHHHHHHHCCC------CSCCCCSSS
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHHHhCCccc---CCCcceecCC
Confidence 347899999999999999999999999999999988876643 467888999999999976532 1357777777
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC-CCHHHHHHHHHH
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE-KDPAIVAKEAIQ 491 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~-~d~~~~a~~al~ 491 (591)
|+ +++|+||||||||||+++|||++.|++|+|.+.++|+||.++++|+..+....+++++..... .++...+.+++.
T Consensus 157 g~--vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 157 PA--VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred Ce--EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 77 999999999999999999999999999999999999999999999999887778887765555 677777788777
Q ss_pred HhhhcCCCcchhccchhHH-----------HHHHHHHHHHhchhcCCCc--EEEEEecccCCCCHHHHHHHHHHHHHHhh
Q 007747 492 EATRNGSDVVLVDTAGRMQ-----------DNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 492 ~~~~~~~d~vliDtSGg~~-----------qr~~LaraL~kl~~~~~Pd--lILLVDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
++...+++.+++||+|+.+ |++.++++|. .+|+ +++| | ||+|+|+..+...|++.
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~-----~~P~e~lLvL-D-pttglD~~~~~~~~~~~----- 302 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS-----GAPNEILLVL-D-GNTGLNMLPQAREFNEV----- 302 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHST-----TCCSEEEEEE-E-GGGGGGGHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHh-----cCCCceEEEE-c-CCCCCCHHHHHHHHHHh-----
Confidence 6655567888899988753 6777777777 8899 5555 8 99999999987666433
Q ss_pred cCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 559 SSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 559 ~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
.+++++|+||+|+. .++|+ +++++.
T Consensus 303 -----~g~t~iiiThlD~~-~~gG~~lsi~~~ 328 (359)
T 2og2_A 303 -----VGITGLILTKLDGS-ARGGCVVSVVEE 328 (359)
T ss_dssp -----TCCCEEEEESCTTC-SCTHHHHHHHHH
T ss_pred -----cCCeEEEEecCccc-ccccHHHHHHHH
Confidence 37899999999995 77888 887754
No 6
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.97 E-value=4.4e-31 Score=286.00 Aligned_cols=255 Identities=23% Similarity=0.379 Sum_probs=223.3
Q ss_pred hHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007747 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (591)
Q Consensus 316 ~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~ 395 (591)
.|++.|+++.|...||++++++++++++++|+++||+.+++..+++.+++.+.+.++....+..+.+.+++.++|.+++.
T Consensus 5 ~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~ 84 (433)
T 3kl4_A 5 NIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFG 84 (433)
T ss_dssp THHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcC
Confidence 47789999999999999999999999999999999999999999999999988877665555677889999999999998
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceee
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~ 475 (591)
+..... +. ..+.|.+++|+||+||||||++++||+++.+.+++|+++++|+||.++++|+..+++.++++++.
T Consensus 85 ~~~~~~----~~---~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~ 157 (433)
T 3kl4_A 85 GDKEPN----VN---PTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG 157 (433)
T ss_dssp SSSCCC----CS---CCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC
T ss_pred cccccc----cc---ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceee
Confidence 643211 11 12357799999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHH--HHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHH
Q 007747 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ--DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~--qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 553 (591)
.....++..++..++..+...++|++++||+|+.+ ....++.++.++....+|+.++||.+++.|.++..++..|++.
T Consensus 158 ~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~ 237 (433)
T 3kl4_A 158 EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA 237 (433)
T ss_dssp CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc
Confidence 77778888888888888877789999999999988 8888999999888888999999999999999999988888655
Q ss_pred HHHhhcCCCCccceEEEeccccccCCcEEE-EEecc
Q 007747 554 LADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCR 588 (591)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~ 588 (591)
+ .++++|+||+|+. .++|+ +++++
T Consensus 238 ~----------~~~gVIlTKlD~~-a~~G~als~~~ 262 (433)
T 3kl4_A 238 S----------PIGSVIITKMDGT-AKGGGALSAVV 262 (433)
T ss_dssp C----------SSEEEEEECGGGC-SCHHHHHHHHH
T ss_pred c----------CCcEEEEeccccc-ccchHHHHHHH
Confidence 3 7899999999995 66676 77654
No 7
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.97 E-value=4.1e-31 Score=289.18 Aligned_cols=237 Identities=32% Similarity=0.461 Sum_probs=199.4
Q ss_pred CccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccc
Q 007747 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDV 406 (591)
Q Consensus 327 ~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~i 406 (591)
.+.+++ +.+++|+++|+++||+.+++.+|++++++.+.++.+... ..++.+|.+.|.+++.+. .+++
T Consensus 220 ~~~ide----~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~l~~~l~~~l~~~-----~~~I 286 (503)
T 2yhs_A 220 GKKIDD----DLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDA----EALYGLLKEEMGEILAKV-----DEPL 286 (503)
T ss_dssp TCBCSH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBG----GGHHHHHHHHHHHHHHTT-----BCCC
T ss_pred cCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHhCCC-----CCCc
Confidence 345664 488999999999999999999999999988876555432 456778888888888653 3578
Q ss_pred ccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHH
Q 007747 407 HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 486 (591)
Q Consensus 407 s~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a 486 (591)
+|.+..|+ +++|+||||||||||+++|+|++.+.+|+|.|.++|+||.++++|+..+..+.+++++....+.++...+
T Consensus 287 sl~i~~Ge--VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV 364 (503)
T 2yhs_A 287 NVEGKAPF--VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 364 (503)
T ss_dssp CCCSCTTE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHH
T ss_pred eeeccCCe--EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHH
Confidence 88888887 9999999999999999999999999999999999999999999999988777778877665666777778
Q ss_pred HHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhc------CCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 487 ~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~------~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
.+.+.++...++|++++||+|+.+.+..+|..|.+++.+ ..|+.+|||.+|++|++++.+++.|++.+
T Consensus 365 ~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~------ 438 (503)
T 2yhs_A 365 FDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------ 438 (503)
T ss_dssp HHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhc------
Confidence 888888777889999999999998888888888877553 35888888899999999999888886553
Q ss_pred CCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 561 PNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 561 ~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
+++++|+||+|+ ..++|. +++++.
T Consensus 439 ----~itgvIlTKLD~-takgG~~lsi~~~ 463 (503)
T 2yhs_A 439 ----GLTGITLTKLDG-TAKGGVIFSVADQ 463 (503)
T ss_dssp ----CCSEEEEECGGG-CSCCTHHHHHHHH
T ss_pred ----CCCEEEEEcCCC-cccccHHHHHHHH
Confidence 799999999999 467888 887764
No 8
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.97 E-value=4.8e-30 Score=277.40 Aligned_cols=253 Identities=28% Similarity=0.410 Sum_probs=219.2
Q ss_pred hHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007747 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (591)
Q Consensus 316 ~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~ 395 (591)
.|++.|+++.|.+.|+++++++.+++++.+|+++||+.+++.+|++.+++...|.++....+..+.+.+++.++|..++.
T Consensus 8 ~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~ 87 (425)
T 2ffh_A 8 RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEALG 87 (425)
T ss_dssp HHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHhC
Confidence 47789999999999999999999999999999999999999999999999999988766666778899999999999997
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceee
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~ 475 (591)
+.. .++++. + |.+++|+|+||+||||++.+||+++.+.+++|++.++|++|.++++|+..+.+..+++++.
T Consensus 88 ~~~-----~~i~l~--~--~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 88 GEA-----RLPVLK--D--RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp SSC-----CCCCCC--S--SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCc-----ccccCC--C--CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 543 456765 3 4599999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q 007747 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~ 555 (591)
.+...++..++.++++.+...++|++++||+|+.+....++.+|.++.....|+.++||-++++|+|++.+...|+..
T Consensus 159 ~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~-- 236 (425)
T 2ffh_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEK-- 236 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHH--
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhc--
Confidence 766678888778888877667899999999999887778888888777777899888888899999998887666543
Q ss_pred HhhcCCCCccceEEEeccccccCCcEEE-EEecc
Q 007747 556 DLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCR 588 (591)
Q Consensus 556 ~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~ 588 (591)
..++++|+||+|.. .++|. +++.+
T Consensus 237 --------l~i~GVIlTKlD~~-~~~g~alsi~~ 261 (425)
T 2ffh_A 237 --------VGVTGLVLTKLDGD-ARGGAALSARH 261 (425)
T ss_dssp --------TCCCEEEEESGGGC-SSCHHHHHHHH
T ss_pred --------CCceEEEEeCcCCc-ccHHHHHHHHH
Confidence 36899999999994 56666 66543
No 9
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.96 E-value=2.8e-29 Score=259.80 Aligned_cols=256 Identities=25% Similarity=0.393 Sum_probs=214.4
Q ss_pred cchHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Q 007747 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (591)
Q Consensus 314 ~g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~i 393 (591)
+..|+++|+++.|.+.++++++++.+++++++|+++||+.+++.+|++.+++...|.++....+..+.+...+.+.|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (297)
T 1j8m_F 4 LDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNL 83 (297)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999888877555556677888999999999
Q ss_pred cCCCCccccccc-cccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccc
Q 007747 394 LTPRRSIDILRD-VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (591)
Q Consensus 394 l~~~~~~~iL~~-is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~ 472 (591)
+.+.. .+ +++... |.+++|+|+||+||||++++||+++.+.+++|++.++|++|.++.+|+..+.+..+++
T Consensus 84 ~~~~~-----~~~i~~~~~---~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~ 155 (297)
T 1j8m_F 84 FGGDK-----EPKVIPDKI---PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP 155 (297)
T ss_dssp TTCSC-----CCCCSCSSS---SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCC
T ss_pred hcccc-----ccccccCCC---CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeE
Confidence 97543 34 666543 4599999999999999999999999999999999999999999999999999888999
Q ss_pred eeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHH--HHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHH
Q 007747 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ--DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 473 l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~--qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
++....+.++..++.++++.+...++|++++||+|+.+ ....++.+|.++.....|+.++||-+++.|.+...+...|
T Consensus 156 v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~ 235 (297)
T 1j8m_F 156 VYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKF 235 (297)
T ss_dssp EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHH
Confidence 87765567888877788887766789999999999998 7667887777666667899999889999998887765444
Q ss_pred HHHHHHhhcCCCCccceEEEeccccccCCcEEE-EEecc
Q 007747 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCR 588 (591)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~ 588 (591)
++ ...+.++|+||+|.. .++|. +++.+
T Consensus 236 ~~----------~~~i~gvVlnk~D~~-~~~g~~~~~~~ 263 (297)
T 1j8m_F 236 NQ----------ASKIGTIIITKMDGT-AKGGGALSAVA 263 (297)
T ss_dssp HH----------TCTTEEEEEECGGGC-TTHHHHHHHHH
T ss_pred Hh----------hCCCCEEEEeCCCCC-cchHHHHHHHH
Confidence 32 146789999999995 45554 55443
No 10
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.96 E-value=2.6e-29 Score=260.89 Aligned_cols=245 Identities=29% Similarity=0.432 Sum_probs=181.4
Q ss_pred HHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCC
Q 007747 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396 (591)
Q Consensus 317 ~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~ 396 (591)
|++.++++.+...+++ ++++.+++++++|+++||+.+++.+|++.+++.+. +.+..++.++|.+++.+
T Consensus 11 l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~l~~ 78 (304)
T 1rj9_A 11 LAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKEKLVGMLEP 78 (304)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHHHHTTTTCT
T ss_pred HHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCc
Confidence 4455666666656777 88999999999999999999999999999987543 24567788999999976
Q ss_pred CCcccccccccccc-----ccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhccc
Q 007747 397 RRSIDILRDVHAAK-----EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (591)
Q Consensus 397 ~~~~~iL~~is~~i-----~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v 471 (591)
....+.+..+++.- ..++|.+++|+||||||||||+++|++++.|++|+|.+.++|+||.++++|+..+.+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i 158 (304)
T 1rj9_A 79 DERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI 158 (304)
T ss_dssp TCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTC
T ss_pred ccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCc
Confidence 54210000112211 1123449999999999999999999999999999999999999999999999998877788
Q ss_pred ceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHH-----------HHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ-----------DNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 472 ~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~-----------qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
+++...++.++...+.+.+..+...+++.+++||+|+.+ ++..++|+|. .+|++++||.+|+++
T Consensus 159 ~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~-----~~P~~~lLvLDa~t~ 233 (304)
T 1rj9_A 159 PVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADP-----EEPKEVWLVLDAVTG 233 (304)
T ss_dssp CEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCT-----TCCSEEEEEEETTBC
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhc-----CCCCeEEEEEcHHHH
Confidence 877666667787777777776655678888999998753 4555666666 889988777889999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
.+..+++..|++.+ +++++|+||.|+. .++|+ ++++|+
T Consensus 234 ~~~~~~~~~~~~~~----------~~t~iivTh~d~~-a~gg~~l~i~~~ 272 (304)
T 1rj9_A 234 QNGLEQAKKFHEAV----------GLTGVIVTKLDGT-AKGGVLIPIVRT 272 (304)
T ss_dssp THHHHHHHHHHHHH----------CCSEEEEECTTSS-CCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHc----------CCcEEEEECCccc-ccccHHHHHHHH
Confidence 99988887775543 7899999999995 56777 887765
No 11
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.95 E-value=8.8e-29 Score=258.65 Aligned_cols=250 Identities=29% Similarity=0.417 Sum_probs=196.3
Q ss_pred hHHHHHHHhccC-ccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007747 316 WFSSMFQSIAGK-ANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (591)
Q Consensus 316 ~~~~~~~~l~g~-~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 394 (591)
.|++.|+++.+. +.++++ .+++++++|+++||+.+++.+|++.+++.+.+.++.. .+++++.++|.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~l 86 (320)
T 1zu4_A 17 NFSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFE------NIKDALVESLYQAY 86 (320)
T ss_dssp HHHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHH------HHHHHHHHHHHHHh
Confidence 355566666654 778874 7899999999999999999999999999887765432 28889999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhh---hccc
Q 007747 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR---RLQV 471 (591)
Q Consensus 395 ~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~---~l~v 471 (591)
.+....+++.+++|...+++ +++|+|+||+||||++++||+++.+.+++|++.++|++|.++++|+..+.+ ..++
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~--vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l 164 (320)
T 1zu4_A 87 TDNDWTNKKYRIDFKENRLN--IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKV 164 (320)
T ss_dssp HCSCC----CCCCCCTTSCE--EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTE
T ss_pred CcccccccccCccccCCCCe--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCc
Confidence 76654444567888766666 999999999999999999999999999999999999999999999988876 6677
Q ss_pred cee-ecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhc------CCCcEEEEEecccCCCCHH
Q 007747 472 PIF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 472 ~l~-~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~------~~PdlILLVDEPt~GlD~~ 544 (591)
+++ ....+.++...+.+++..+...++|++++||+|+.+....+|.+|.++..+ ..|+.++||-+++.+.+.+
T Consensus 165 ~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l 244 (320)
T 1zu4_A 165 DLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGV 244 (320)
T ss_dssp EEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHH
T ss_pred eEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHH
Confidence 776 444556777677777766666789999999999999877787777665443 3488888888999887776
Q ss_pred HHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE-EEecc
Q 007747 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCR 588 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~ 588 (591)
.+...|+ ....++++|+||+|.. .++|. +++.+
T Consensus 245 ~~~~~~~----------~~~~i~GvVltk~d~~-~~~g~~~~~~~ 278 (320)
T 1zu4_A 245 IQAEEFS----------KVADVSGIILTKMDST-SKGGIGLAIKE 278 (320)
T ss_dssp HHHHHHT----------TTSCCCEEEEECGGGC-SCTTHHHHHHH
T ss_pred HHHHHHh----------hcCCCcEEEEeCCCCC-CchhHHHHHHH
Confidence 6654332 1247899999999995 55665 65543
No 12
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.95 E-value=1e-27 Score=260.05 Aligned_cols=255 Identities=25% Similarity=0.415 Sum_probs=215.4
Q ss_pred chHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007747 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (591)
Q Consensus 315 g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 394 (591)
..|++.|+++.|.+.||++++++.+++++.+|+++||+.+++.+|++.+++...|.++....+..+.+.+++.++|.+++
T Consensus 7 ~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (433)
T 2xxa_A 7 DRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAM 86 (433)
T ss_dssp HHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHh
Confidence 34778999999999999999999999999999999999999999999999999998876655556678889999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-CcEEEEcccccceeeeecchhhhhhhcccce
Q 007747 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPI 473 (591)
Q Consensus 395 ~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l 473 (591)
.+... .+.+ ..+.|++++|+|++||||||+..+||.++... +.+|+++.+|+||.++++|+.++.+..++++
T Consensus 87 ~~~~~-----~~~~--~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v 159 (433)
T 2xxa_A 87 GEENQ-----TLNL--AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDF 159 (433)
T ss_dssp CSSSC-----CCCC--CSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEE
T ss_pred ccccc-----cccc--cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeE
Confidence 75431 2222 34567899999999999999999999999887 8899999999999999999999988889998
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHH
Q 007747 474 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (591)
Q Consensus 474 ~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 553 (591)
+..+.+.++..++.+++..+...++|++++||+|+.+....++.+|..+.....|+.++||-+++.|.|.+.+...|+..
T Consensus 160 ~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~ 239 (433)
T 2xxa_A 160 FPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEA 239 (433)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhcc
Confidence 87666678888878888877667899999999999887667888888777778999999988899999998877666432
Q ss_pred HHHhhcCCCCccceEEEeccccccCCcEEE-EEec
Q 007747 554 LADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMC 587 (591)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~ 587 (591)
..+.++|+||+|.. .++|. +++.
T Consensus 240 ----------l~i~gvVlnK~D~~-~~~g~~l~i~ 263 (433)
T 2xxa_A 240 ----------LPLTGVVLTKVDGD-ARGGAALSIR 263 (433)
T ss_dssp ----------SCCCCEEEECTTSS-SCCTHHHHHH
T ss_pred ----------CCCeEEEEecCCCC-ccHHHHHHHH
Confidence 36788999999994 55555 5543
No 13
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.95 E-value=8.2e-28 Score=249.89 Aligned_cols=236 Identities=31% Similarity=0.464 Sum_probs=189.6
Q ss_pred HHHHHHhc-cCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCC
Q 007747 318 SSMFQSIA-GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396 (591)
Q Consensus 318 ~~~~~~l~-g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~ 396 (591)
++.|+++. |. .+++ +.+++++++|+++||+.+++.+|++.+++ . +. . +.+++.++|.+++.+
T Consensus 31 ~~~~~~~~~~~-~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~------~----~~-~-~~~~~~~~l~~~l~~ 93 (306)
T 1vma_A 31 FGRVVKLLKGK-KLDD----ETREELEELLIQADVGVETTEYILERLEE------K----DG-D-ALESLKEIILEILNF 93 (306)
T ss_dssp HHHHHHHHTTC-CCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHTT------C----CS-C-HHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCC-CCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHh------c----CH-H-HHHHHHHHHHHHhCC
Confidence 34455554 45 7876 48999999999999999999999999965 1 11 2 778899999999976
Q ss_pred CCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeec
Q 007747 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476 (591)
Q Consensus 397 ~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~ 476 (591)
.. .+++...++ .+++|+|||||||||++++||+++.+.+++|.+.++|+||.++++|+..+.+.++++++..
T Consensus 94 ~~------~~~~~~~~~--~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~ 165 (306)
T 1vma_A 94 DT------KLNVPPEPP--FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISH 165 (306)
T ss_dssp CC------CCCCCSSSC--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECC
T ss_pred CC------CCcccCCCC--eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEec
Confidence 43 234443344 4999999999999999999999999999999999999999999999999999889988776
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhc------CCCcEEEEEecccCCCCHHHHHHHH
Q 007747 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 477 ~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~------~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
..+.++..++.+++..+...++|++++||+|+.+....++.+|.++..+ ..|+.++||-+++++.+.+.+...|
T Consensus 166 ~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~ 245 (306)
T 1vma_A 166 SEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIF 245 (306)
T ss_dssp STTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHH
Confidence 6677888777777777667789999999999987777887777766543 3589888888899888777776555
Q ss_pred HHHHHHhhcCCCCccceEEEeccccccCCcEEE-EEeccc
Q 007747 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCRE 589 (591)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~~ 589 (591)
++. ..++++|+||+|.. .++|+ +++++.
T Consensus 246 ~~~----------~~i~gvVlTk~D~~-~~gG~~l~~~~~ 274 (306)
T 1vma_A 246 KEA----------VNVTGIILTKLDGT-AKGGITLAIARE 274 (306)
T ss_dssp HHH----------SCCCEEEEECGGGC-SCTTHHHHHHHH
T ss_pred Hhc----------CCCCEEEEeCCCCc-cchHHHHHHHHH
Confidence 432 37899999999995 66776 766543
No 14
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.94 E-value=2.6e-26 Score=237.15 Aligned_cols=253 Identities=29% Similarity=0.423 Sum_probs=207.9
Q ss_pred hHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007747 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (591)
Q Consensus 316 ~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~ 395 (591)
.|++.++++.+.+.++++++.+.+++++..|+.+++..+++.+|++++.....|+.+....+..+.+...+.+.|...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (295)
T 1ls1_A 8 RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALG 87 (295)
T ss_dssp HHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHHC
Confidence 36678999999999999999999999999999999999999999999998877776643334445677778888888885
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceee
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~ 475 (591)
+.. +++++. +|+ +++|+|+||+||||++++||+++.+.+|+|.+.++|++|.+++.|+..+.+..+++++.
T Consensus 88 ~~~-----~~i~~~--~~~--~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~ 158 (295)
T 1ls1_A 88 GEA-----RLPVLK--DRN--LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp SSC-----CCCCCC--SSE--EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCC-----ceeecC--CCe--EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE
Confidence 432 467776 555 99999999999999999999999999999999999999999999999888888888876
Q ss_pred cCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q 007747 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~ 555 (591)
.+...++......++..+...++|++++||+|+......++.++.++.....|+.+++|-+++.+.+...+...|+..
T Consensus 159 ~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~-- 236 (295)
T 1ls1_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEK-- 236 (295)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHH--
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhc--
Confidence 555567777767777777667899999999998877777788887777767899988888899887777666555432
Q ss_pred HhhcCCCCccceEEEeccccccCCcEEE-EEecc
Q 007747 556 DLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSMCR 588 (591)
Q Consensus 556 ~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~~~ 588 (591)
..+.++|+||+|.. .++|. +++++
T Consensus 237 --------~~i~givlnk~d~~-~~~g~~~~~~~ 261 (295)
T 1ls1_A 237 --------VGVTGLVLTKLDGD-ARGGAALSARH 261 (295)
T ss_dssp --------TCCCEEEEECGGGC-SSCHHHHHHHH
T ss_pred --------CCCCEEEEECCCCC-ccHHHHHHHHH
Confidence 36889999999995 56666 66654
No 15
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.93 E-value=1.5e-26 Score=255.00 Aligned_cols=253 Identities=25% Similarity=0.438 Sum_probs=208.0
Q ss_pred hHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007747 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (591)
Q Consensus 316 ~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~ 395 (591)
.|++.|+++.+.+.++++++++++++++.+|+++||+.+++.++++.|++...+.++....+....+.+++.++|.+++.
T Consensus 9 ~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~ 88 (504)
T 2j37_W 9 KITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVD 88 (504)
T ss_dssp TTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHHhc
Confidence 45567888999999999999999999999999999999999999999999888887765556667888999999999998
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceee
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~ 475 (591)
+... .+. ...++|.+|+|+|++||||||++++|+.++...+.+|.++++|+||.++++|+..+....+++++.
T Consensus 89 ~~~~-----~~~--~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~ 161 (504)
T 2j37_W 89 PGVK-----AWT--PTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYG 161 (504)
T ss_dssp CCCC-----CCC--CCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEE
T ss_pred cccc-----hhc--cccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEc
Confidence 6432 111 223567799999999999999999999998877889999999999999999999998888999887
Q ss_pred cCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q 007747 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 476 ~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~ 555 (591)
.....++..++.+++..+...++|++++||+|+.+....++.++.++.....|+.++||-+++.|.+...+...|++.
T Consensus 162 ~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~-- 239 (504)
T 2j37_W 162 SYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDK-- 239 (504)
T ss_dssp CCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHH--
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhh--
Confidence 666778888877888877667899999999999876566777776655556899999999999999987776555443
Q ss_pred HhhcCCCCccceEEEeccccccCCcEEE-EEe
Q 007747 556 DLSSSPNPQLIDGILLTKFDTIDDKHYQ-WSM 586 (591)
Q Consensus 556 ~l~~~~~~~~it~IIlTK~D~i~d~vGa-ls~ 586 (591)
..++++|+||+|.. .+.|. +++
T Consensus 240 --------~~i~gvVlNK~D~~-~~~g~~l~~ 262 (504)
T 2j37_W 240 --------VDVASVIVTKLDGH-AKGGGALSA 262 (504)
T ss_dssp --------HCCCCEEEECTTSC-CCCTHHHHH
T ss_pred --------cCceEEEEeCCccc-cchHHHHHH
Confidence 26778999999996 45554 443
No 16
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.93 E-value=2.6e-26 Score=249.05 Aligned_cols=252 Identities=25% Similarity=0.394 Sum_probs=206.1
Q ss_pred chHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007747 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (591)
Q Consensus 315 g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 394 (591)
..|++.|+++.|.+.+|++++++.+++++.+|++++|+..++.++++.+++...+.++....+....+...+.++|.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 85 (432)
T 2v3c_C 6 ENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLL 85 (432)
T ss_dssp HHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999988777654333445568888999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhccccee
Q 007747 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (591)
Q Consensus 395 ~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~ 474 (591)
.+... .+.+..++|.+++|+|++||||||++++||+++...+.+|+++++|+||.++++|+..+++..+++++
T Consensus 86 ~~~~~-------~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~ 158 (432)
T 2v3c_C 86 GEEAK-------KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIY 158 (432)
T ss_dssp CCSCC-------CCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEE
T ss_pred CCCCc-------CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceE
Confidence 75422 12233466779999999999999999999999988888999999999999999999999888899988
Q ss_pred ecC-CCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHH
Q 007747 475 EKG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (591)
Q Consensus 475 ~~~-~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~ 553 (591)
... ...++..++.+++..+ .++|++++||+|+.+....++.+|.++.....|+.++||-+++.|+|...+...|+
T Consensus 159 ~~~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~-- 234 (432)
T 2v3c_C 159 GDETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFK-- 234 (432)
T ss_dssp CCSSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHH--
T ss_pred ecCCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHh--
Confidence 754 4555544555666655 67899999999999888888888888777789999999999999998776654432
Q ss_pred HHHhhcCCCCc-cceEEEeccccccCCcEEE-EEe
Q 007747 554 LADLSSSPNPQ-LIDGILLTKFDTIDDKHYQ-WSM 586 (591)
Q Consensus 554 L~~l~~~~~~~-~it~IIlTK~D~i~d~vGa-ls~ 586 (591)
... .++++|+||+|.. .++|. +++
T Consensus 235 --------~~~~~i~gvVlnK~D~~-~~~g~~l~~ 260 (432)
T 2v3c_C 235 --------EAVGEIGSIIVTKLDGS-AKGGGALSA 260 (432)
T ss_dssp --------TTSCSCEEEEEECSSSC-STTHHHHHH
T ss_pred --------hcccCCeEEEEeCCCCc-cchHHHHHH
Confidence 123 5789999999995 45554 544
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=1.7e-26 Score=236.64 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=136.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-----------eeeeecchhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT---- 464 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-----------RigaveQl~~---- 464 (591)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...
T Consensus 21 ~~~L~~isl~i~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 21 THALKGINMNIKRGE--VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp CEEEEEEEEEEETTS--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred CeEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 358999999999999 99999999999999999999999999999999998861 4999999652
Q ss_pred ---hhhhcccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 465 ---HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 465 ---~~~~l~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
..+++.+.. ..++... ...+.++++.+++..+ +..+..+||||+||+.||++|+ .+|+++|| |||
T Consensus 99 ~~tv~e~l~~~~--~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~-----~~P~lLlL-DEP 170 (275)
T 3gfo_A 99 SASVYQDVSFGA--VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV-----MEPKVLIL-DEP 170 (275)
T ss_dssp SSBHHHHHHHHH--HTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ECT
T ss_pred cCcHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-ECc
Confidence 222222221 1122222 2456667777766554 6888999999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhh-cCCCCccceEEEeccccccCCcEEEE
Q 007747 538 LVGNDAVDQLSKFNQKLADLS-SSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~-~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+|||+..+.. +.+.|..+. ..+.++.+.+|-+.-+..+||++..+
T Consensus 171 ts~LD~~~~~~-i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 171 TAGLDPMGVSE-IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp TTTCCHHHHHH-HHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEE
T ss_pred cccCCHHHHHH-HHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999755 447888876 44556666666667777778887654
No 18
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.93 E-value=4.9e-26 Score=241.05 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=132.2
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----------ceeeeecchhhhh
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRTHA 466 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----------~RigaveQl~~~~ 466 (591)
....+|++|||++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++ .++|+|+|...+.
T Consensus 15 ~~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPGE--ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp TTEEEEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred CCEEEEEeeEEEEcCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 34678999999999999 9999999999999999999999999999999999876 2499999976443
Q ss_pred hhc------ccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 RRL------QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 ~~l------~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
..+ .+++....... .....+.++++.+++.++ +..+.++||||+||++|||+|+ .+|+++|| ||||
T Consensus 93 p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~-----~~P~lLLL-DEPt 166 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA-----PDPELILL-DEPF 166 (359)
T ss_dssp TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTT
T ss_pred CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCc
Confidence 333 22221111111 223456777887777654 7889999999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHh-hcCCCCccceEEEecc----ccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADL-SSSPNPQLIDGILLTK----FDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l-~~~~~~~~it~IIlTK----~D~i~d~vGal 584 (591)
+|||+..+...+ ..|..+ .+. +++.|++|. +-.++|++..+
T Consensus 167 s~LD~~~r~~l~-~~l~~~~~~~----g~tvi~vTHd~~ea~~~aDri~vl 212 (359)
T 3fvq_A 167 SALDEQLRRQIR-EDMIAALRAN----GKSAVFVSHDREEALQYADRIAVM 212 (359)
T ss_dssp TTSCHHHHHHHH-HHHHHHHHHT----TCEEEEECCCHHHHHHHCSEEEEE
T ss_pred ccCCHHHHHHHH-HHHHHHHHhC----CCEEEEEeCCHHHHHHHCCEEEEE
Confidence 999999875544 444443 333 455555554 44567776554
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.93 E-value=8.4e-26 Score=228.81 Aligned_cols=177 Identities=19% Similarity=0.127 Sum_probs=134.2
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARR 468 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~~ 468 (591)
...+|++|||++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+...
T Consensus 19 ~~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 19 EFKALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp TEEEEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred CEeeEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 3468999999999999 99999999999999999999999999999999997751 38999997644333
Q ss_pred cc----cceeecC--CC------------CC--HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCC
Q 007747 469 LQ----VPIFEKG--YE------------KD--PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (591)
Q Consensus 469 l~----v~l~~~~--~~------------~d--~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~ 527 (591)
+. +.+.... ++ .. ....+.++++.+++..+ +..+.++||||+||+.||++|+ .+
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~-----~~ 171 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM-----TN 171 (257)
T ss_dssp SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH-----TC
T ss_pred CcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHH-----cC
Confidence 31 1111111 11 11 23455667777766543 6788899999999999999999 99
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 528 PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+++|| ||||+|||+..+.. +.+.|..+...+.++.+.+|.+..+..+||++..+
T Consensus 172 p~lllL-DEPts~LD~~~~~~-l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (257)
T 1g6h_A 172 PKMIVM-DEPIAGVAPGLAHD-IFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM 226 (257)
T ss_dssp CSEEEE-ESTTTTCCHHHHHH-HHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred CCEEEE-eCCccCCCHHHHHH-HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999 99999999999754 44788888665555555555555566677876553
No 20
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=3.5e-26 Score=227.12 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=130.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~~~~ 466 (591)
..+|+++||++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+.
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 17 YEILKGISLSVKKGE--FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp EEEEEEEEEEEETTC--EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred EeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 568999999999999 99999999999999999999999999999999997751 389999965333
Q ss_pred h------hcccceeecCCC-CCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 467 R------RLQVPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 467 ~------~l~v~l~~~~~~-~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
. ++.++....+.. ......+.++++.+++..+ +..+..+||||+||+.||++|+ .+|+++|| ||||
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL-DEPt 168 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALA-----NEPILLFA-DEPT 168 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTT-----TCCSEEEE-ESTT
T ss_pred CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCC
Confidence 2 222221111111 1122445667777766554 6788899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+.. +.+.|..+...+.++.+.+|-+.-+ .+||++..+
T Consensus 169 ~~LD~~~~~~-~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l 212 (224)
T 2pcj_A 169 GNLDSANTKR-VMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEM 212 (224)
T ss_dssp TTCCHHHHHH-HHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEE
T ss_pred CCCCHHHHHH-HHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 9999998754 4477887765544444444444334 456766443
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=6.7e-26 Score=229.80 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=134.9
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc--------eeeeecchhhhhhhc-
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL- 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l- 469 (591)
...+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++. ++|+++|...+...+
T Consensus 27 ~~~vl~~vsl~i~~Ge--i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 27 KKEILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp TEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred CEEEEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 3568999999999999 99999999999999999999999999999999998752 489999975433322
Q ss_pred ---ccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 470 ---QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 470 ---~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
++.+....++... ...+.++++.+++..+ +..+..+||||+||+.||++|+ .+|+++|| ||||+|||
T Consensus 105 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p~lllL-DEPts~LD 178 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM-----VNPRLAIL-DEPTSGLD 178 (256)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTTTCC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccccC
Confidence 1112111112222 2345667777666543 6778899999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+..+.. +.+.|..+...+.++.+.+|.+.-+..+||++..+
T Consensus 179 ~~~~~~-l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l 219 (256)
T 1vpl_A 179 VLNARE-VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 219 (256)
T ss_dssp HHHHHH-HHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred HHHHHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEE
Confidence 999754 44788888765555555666655566777877554
No 22
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=6e-26 Score=230.68 Aligned_cols=177 Identities=16% Similarity=0.125 Sum_probs=133.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------------------ee
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------------RS 456 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------------------Ri 456 (591)
...+|++|||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++
T Consensus 18 ~~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 18 GHEVLKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp TEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred CEEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 3468999999999999 99999999999999999999999999999999987652 38
Q ss_pred eeecchhhhhhhc----ccceee-cCCCCCH---HHHHHHHHHHhhhcCC--CcchhccchhHHHHHHHHHHHHhchhcC
Q 007747 457 GAVEQLRTHARRL----QVPIFE-KGYEKDP---AIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (591)
Q Consensus 457 gaveQl~~~~~~l----~v~l~~-~~~~~d~---~~~a~~al~~~~~~~~--d~vliDtSGg~~qr~~LaraL~kl~~~~ 526 (591)
|+++|...+...+ ++.+.. ..++... ...+.++++.+++..+ +..+..+||||+||+.||++|+ .
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~-----~ 170 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA-----M 170 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHH-----T
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHh-----c
Confidence 9999975333222 111111 1112222 2345667777666443 6778899999999999999999 9
Q ss_pred CCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 527 ~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|+++|| ||||+|||+..+.. +.+.|..+...+.++.+.+|.+.-+..+||++..+
T Consensus 171 ~p~lllL-DEPts~LD~~~~~~-~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (262)
T 1b0u_A 171 EPDVLLF-DEPTSALDPELVGE-VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 226 (262)
T ss_dssp CCSEEEE-ESTTTTSCHHHHHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred CCCEEEE-eCCCccCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999 99999999999754 44788888665555555555555556677877554
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=7.2e-26 Score=230.48 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=132.7
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-----------eeeeecchhhhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTHAR 467 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-----------RigaveQl~~~~~ 467 (591)
...+|++|||++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++. ++|+++|...+..
T Consensus 36 ~~~vL~~vsl~i~~Ge--i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 36 SLEVLKGINVHIREGE--VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp TEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred CEEEEEeeEEEEcCCC--EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 3568999999999999 99999999999999999999999999999999997751 3899999754332
Q ss_pred hc----ccceee-cCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 468 RL----QVPIFE-KGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 468 ~l----~v~l~~-~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
.+ ++.+.. ..++... ...+.++++.+++..+ +..+..+||||+||+.||++|+ .+|+++|| ||||
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~-----~~p~lllL-DEPt 187 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALA-----MEPKIMLF-DEPT 187 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTT
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH-----CCCCEEEE-eCCc
Confidence 22 111111 1112221 2445667777766543 6788899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+.. +.+.|..+...+.++.+.+|.+.-+..+||++..+
T Consensus 188 s~LD~~~~~~-~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 188 SALDPEMVGE-VLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp TTSCHHHHHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ccCCHHHHHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 9999999754 55788887655444444444444455667776543
No 24
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.92 E-value=1.2e-25 Score=224.98 Aligned_cols=174 Identities=20% Similarity=0.160 Sum_probs=128.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~~~~ 466 (591)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+.
T Consensus 18 ~~~L~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 458999999999999 99999999999999999999999999999999998751 399999976443
Q ss_pred h------hcccceeecC-CCCCH---HHHHHHHHHHhhhcC-C-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 467 R------RLQVPIFEKG-YEKDP---AIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 467 ~------~l~v~l~~~~-~~~d~---~~~a~~al~~~~~~~-~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
. ++.++..... ..... ...+.++++.+++.. . +..+.++||||+||+.|||+|+ .+|+++||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~-----~~p~llll- 169 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA-----NNPPIILA- 169 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 3 3322221111 11222 234455566655543 2 6778999999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||||+|||+..+.. +.+.|.++... +.++.+.+|-+.-. .+||++..
T Consensus 170 DEPts~LD~~~~~~-i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~ 217 (235)
T 3tif_A 170 DQPTWALDSKTGEK-IMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIY 217 (235)
T ss_dssp ESTTTTSCHHHHHH-HHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEE
T ss_pred eCCcccCCHHHHHH-HHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEE
Confidence 99999999999855 44777777643 44444444444423 45676644
No 25
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=6.3e-26 Score=240.60 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=135.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhh-
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTH- 465 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~- 465 (591)
...+|++|||++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.|+. ++|+|+|...+
T Consensus 40 ~~~aL~~vsl~i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~ 117 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117 (366)
T ss_dssp EEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCC
T ss_pred CeEEEEeeEEEEcCCC--EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccC
Confidence 3568999999999999 99999999999999999999999999999999998862 49999997643
Q ss_pred -----hhhcccceeecCCC-CCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 466 -----ARRLQVPIFEKGYE-KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 466 -----~~~l~v~l~~~~~~-~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
.+++.+++...+.. ......+.++++.+++..+ +..+..+||||+||+.|||+|+ .+|+++|| ||||
T Consensus 118 ~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~-----~~P~lLLl-DEPT 191 (366)
T 3tui_C 118 SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA-----SNPKVLLC-DQAT 191 (366)
T ss_dssp TTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT-----TCCSEEEE-ESTT
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCC
Confidence 33333322111111 1123456677777776553 7888999999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+|||+..+...+ +.|.++... +.++.+.+|-+.-+-.+||++..+
T Consensus 192 s~LD~~~~~~i~-~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl 237 (366)
T 3tui_C 192 SALDPATTRSIL-ELLKDINRRLGLTILLITHEMDVVKRICDCVAVI 237 (366)
T ss_dssp TTSCHHHHHHHH-HHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred ccCCHHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999986544 778877543 444444444444455668887654
No 26
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.5e-25 Score=224.69 Aligned_cols=175 Identities=15% Similarity=0.155 Sum_probs=133.1
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc----------eeeeecchhhhh---
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHA--- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~----------RigaveQl~~~~--- 466 (591)
..+|+++||++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+.
T Consensus 19 ~~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l 96 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred eeEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC
Confidence 468999999999999 99999999999999999999999999999999997751 399999965433
Q ss_pred ---hhcccceeecCCCCC-HHHHHHHHHHHhh-hcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 467 ---RRLQVPIFEKGYEKD-PAIVAKEAIQEAT-RNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 467 ---~~l~v~l~~~~~~~d-~~~~a~~al~~~~-~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
+++.+..+ ...... ....+.++++.+. +... +..+..+||||+||+.||++|+ .+|+++|| ||||+|
T Consensus 97 tv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p~lllL-DEPts~ 169 (240)
T 1ji0_A 97 TVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALM-----SRPKLLMM-DEPSLG 169 (240)
T ss_dssp BHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHT-----TCCSEEEE-ECTTTT
T ss_pred cHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCccc
Confidence 33222211 111122 2344566677663 5443 6778899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||+..+.. +.+.|..+...+.++.+.+|.+..+..+||++..+
T Consensus 170 LD~~~~~~-l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l 212 (240)
T 1ji0_A 170 LAPILVSE-VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp CCHHHHHH-HHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred CCHHHHHH-HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999754 44778887655555555555555555667876554
No 27
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.92 E-value=2.2e-25 Score=228.76 Aligned_cols=177 Identities=16% Similarity=0.125 Sum_probs=135.4
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-----------eeeeecchhhh--
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTH-- 465 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-----------RigaveQl~~~-- 465 (591)
...+|++|+|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.|.++. ++|+++|....
T Consensus 33 ~~~vL~~isl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 33 GKTILKKISWQIAKGD--KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp TEEEEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred CEEEEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 3568999999999999 99999999999999999999999999999999997753 38999996532
Q ss_pred ------hhhcccceee--cCCC-CC--HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ------ARRLQVPIFE--KGYE-KD--PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ------~~~l~v~l~~--~~~~-~d--~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++.+.... ..++ .. ....+.++++.+++..+ +..+.++||||+||+.|||+|+ .+|+++||
T Consensus 111 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p~lLlL 185 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM-----GQPQVLIL 185 (279)
T ss_dssp CTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH-----TCCSEEEE
T ss_pred CCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----CCCCEEEE
Confidence 2222221111 0011 11 12345666777666443 6788899999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCc--cceEEEeccccccCCcEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQ--LIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~--~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+.. +.+.|..+...+.++ .+.+|.+..+..+||++..+
T Consensus 186 -DEPts~LD~~~~~~-l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l 236 (279)
T 2ihy_A 186 -DEPAAGLDFIARES-LLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLL 236 (279)
T ss_dssp -ESTTTTCCHHHHHH-HHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEE
T ss_pred -eCCccccCHHHHHH-HHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999754 447788876556666 66777777777778887554
No 28
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=1e-25 Score=229.63 Aligned_cols=177 Identities=15% Similarity=0.088 Sum_probs=133.6
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh---
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH--- 465 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~--- 465 (591)
....+|++|||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+
T Consensus 22 ~~~~vL~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (266)
T 4g1u_C 22 QQQALINDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFP 99 (266)
T ss_dssp TTEEEEEEEEEEEETTC--EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSC
T ss_pred CCeeEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCC
Confidence 34578999999999999 99999999999999999999999999999999998862 38999996533
Q ss_pred ---hhhcccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcC------CCcEEEEEe
Q 007747 466 ---ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLN------NPDLVLFVG 535 (591)
Q Consensus 466 ---~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~------~PdlILLVD 535 (591)
.+++.+.... .........+.++++.+++..+ +..+..+||||+||+.|||+|+ . +|+++|| |
T Consensus 100 ~tv~e~l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~-----~~~~~~~~p~lLll-D 172 (266)
T 4g1u_C 100 FSVSEVIQMGRAP-YGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA-----QLWQPQPTPRWLFL-D 172 (266)
T ss_dssp CBHHHHHHGGGTT-SCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH-----HTCCSSCCCEEEEE-C
T ss_pred CCHHHHHHhhhhh-cCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh-----cccccCCCCCEEEE-e
Confidence 2322222111 1123345567778887776654 6788899999999999999999 7 9999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCC-CCccceEEEeccccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+|||+..+.. +.+.|..+.... .++.+.+|-+.-+..+||++..+
T Consensus 173 EPts~LD~~~~~~-i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl 221 (266)
T 4g1u_C 173 EPTSALDLYHQQH-TLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL 221 (266)
T ss_dssp CCCSSCCHHHHHH-HHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred CccccCCHHHHHH-HHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 9999999999854 447787776542 23333334444445567776553
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.92 E-value=2.9e-25 Score=226.09 Aligned_cols=176 Identities=16% Similarity=0.168 Sum_probs=133.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------ceeeeecchh-hh------h
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLR-TH------A 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------~RigaveQl~-~~------~ 466 (591)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++ .++|+++|.. .. .
T Consensus 20 ~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGE--CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 468999999999999 9999999999999999999999999999999999875 2489999974 22 2
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHhhhc--C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 467 ~~l~v~l~~~~~~~d~~~~a~~al~~~~~~--~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+++.+..............+.++++.+++. . .+..+..+||||+||+.||++|+ .+|+++|| ||||+|||+
T Consensus 98 enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p~lllL-DEPts~LD~ 171 (266)
T 2yz2_A 98 DEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV-----HEPDILIL-DEPLVGLDR 171 (266)
T ss_dssp HHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTTTCCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCccccCCH
Confidence 222221110011122234566778777765 4 36778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+.. +.+.|..+...+.++.+.+|-+.-+..+||++..+
T Consensus 172 ~~~~~-l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l 211 (266)
T 2yz2_A 172 EGKTD-LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVL 211 (266)
T ss_dssp HHHHH-HHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred HHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 98754 44778887654444555555555556667776544
No 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.92 E-value=1.4e-25 Score=239.23 Aligned_cols=173 Identities=19% Similarity=0.131 Sum_probs=133.3
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhhc-
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRL- 469 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~l- 469 (591)
....+|++|||++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++ .++|+|+|...+...+
T Consensus 14 g~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~lt 91 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91 (381)
T ss_dssp TTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSC
T ss_pred CCEEEEeeeEEEECCCC--EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCC
Confidence 34678999999999999 9999999999999999999999999999999999886 2499999976443333
Q ss_pred -----ccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 470 -----QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 470 -----~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
.+++. .++... ...+.++++.+++..+ +..+.++||||+||++|||+|+ .+|+++|| ||||++
T Consensus 92 V~eni~~~~~--~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~-----~~P~lLLL-DEPts~ 163 (381)
T 3rlf_A 92 VAENMSFGLK--LAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-----AEPSVFLL-DEPLSN 163 (381)
T ss_dssp HHHHHTHHHH--HTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH-----HCCSEEEE-ESTTTT
T ss_pred HHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCCcC
Confidence 22221 122222 2456667777776554 7889999999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEEE
Q 007747 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQW 584 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGal 584 (591)
||+..+...+ +.|..+..+ .+++.|++|. +-.++|++..+
T Consensus 164 LD~~~~~~l~-~~l~~l~~~---~g~tii~vTHd~~ea~~~aDri~vl 207 (381)
T 3rlf_A 164 LDAALRVQMR-IEISRLHKR---LGRTMIYVTHDQVEAMTLADKIVVL 207 (381)
T ss_dssp SCHHHHHHHH-HHHHHHHHH---HCCEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHH-HHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999875444 667776543 2455555554 44567776553
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.92 E-value=6.8e-26 Score=224.03 Aligned_cols=150 Identities=16% Similarity=0.160 Sum_probs=118.5
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----ceeeeecchhhhhh------hcc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHAR------RLQ 470 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----~RigaveQl~~~~~------~l~ 470 (591)
.+|+++||++.+|+ +++|+|||||||||||++|+|+++|+.|+|.+.|.++ .++|+++|...+.. ++.
T Consensus 23 ~il~~vsl~i~~Ge--~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 100 (214)
T 1sgw_A 23 PVLERITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLK 100 (214)
T ss_dssp EEEEEEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred eEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHH
Confidence 68999999999999 9999999999999999999999999999999999875 35999999754332 222
Q ss_pred cceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHH
Q 007747 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 471 v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
+.....+...+ ...+.++++.+++...+..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+.. +
T Consensus 101 ~~~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~-----~~p~lllL-DEPts~LD~~~~~~-l 172 (214)
T 1sgw_A 101 AVASLYGVKVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLL-----VNAEIYVL-DDPVVAIDEDSKHK-V 172 (214)
T ss_dssp HHHHHTTCCCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTT-----SCCSEEEE-ESTTTTSCTTTHHH-H
T ss_pred HHHHhcCCchH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCCcCCCHHHHHH-H
Confidence 21110111123 45566777777665446678899999999999999999 99999999 99999999998754 4
Q ss_pred HHHHHHhhcC
Q 007747 551 NQKLADLSSS 560 (591)
Q Consensus 551 ~~~L~~l~~~ 560 (591)
.+.|..+...
T Consensus 173 ~~~l~~~~~~ 182 (214)
T 1sgw_A 173 LKSILEILKE 182 (214)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 4777777643
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=2.9e-25 Score=223.08 Aligned_cols=173 Identities=20% Similarity=0.134 Sum_probs=130.4
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhcc----
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ---- 470 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l~---- 470 (591)
+|+++||++++ + +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+...+.
T Consensus 14 ~l~~isl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-D--YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-S--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-E--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 48999999999 9 99999999999999999999999999999999997752 4899999754333221
Q ss_pred cceeecCCCCC-HHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 471 VPIFEKGYEKD-PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 471 v~l~~~~~~~d-~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
+.+....++.. ....+.++++.+++.++ +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+..
T Consensus 91 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-----~~p~lllL-DEPts~LD~~~~~~ 164 (240)
T 2onk_A 91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALV-----IQPRLLLL-DEPLSAVDLKTKGV 164 (240)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHT-----TCCSSBEE-ESTTSSCCHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccCCHHHHHH
Confidence 11111111111 13445666776666554 6778899999999999999999 99999999 99999999998754
Q ss_pred HHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 549 KFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 549 ~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.+.|..+... +.++.+.+|-+..+..+||++..+
T Consensus 165 -~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l 200 (240)
T 2onk_A 165 -LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200 (240)
T ss_dssp -HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred -HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44777777543 555555666555556667876544
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.91 E-value=4.9e-25 Score=233.58 Aligned_cols=177 Identities=16% Similarity=0.143 Sum_probs=132.3
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhhc--
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRL-- 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~l-- 469 (591)
...+|++++|++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++ .++|+|+|...+...+
T Consensus 15 ~~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDGE--FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp TEEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred CEEEEeeeEEEEcCCC--EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 3568999999999999 9999999999999999999999999999999999876 2499999975443333
Q ss_pred --ccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 --QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 --~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
++.+....++... ...+.++++.+++.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~-----~~P~lLLL-DEP~s~LD~ 166 (359)
T 2yyz_A 93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALV-----KQPKVLLF-DEPLSNLDA 166 (359)
T ss_dssp HHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTTTSCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCcccCCH
Confidence 1222111112111 1346677777776554 7888999999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+.. +.+.|..+... +.++.+.+|-+..+..++|++..+
T Consensus 167 ~~r~~-l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl 207 (359)
T 2yyz_A 167 NLRMI-MRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVF 207 (359)
T ss_dssp HHHHH-HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHH-HHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 98754 44677776543 333333344444445567876554
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=4.8e-25 Score=233.33 Aligned_cols=174 Identities=17% Similarity=0.165 Sum_probs=131.8
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhhhc--
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL-- 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~~l-- 469 (591)
...+|++++|++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++. ++|+|+|...+...+
T Consensus 27 ~~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 27 GARSVRGVSFQIREGE--MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp STTCEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CCEEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 4568999999999999 99999999999999999999999999999999998762 499999976443333
Q ss_pred --ccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 --QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 --~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
++.+....++... ...+.++++.+++.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+
T Consensus 105 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~-----~~P~lLLL-DEP~s~LD~ 178 (355)
T 1z47_A 105 YDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA-----PRPQVLLF-DEPFAAIDT 178 (355)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTCCSSH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccCCH
Confidence 1211111112122 3456677777776554 7888999999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGal 584 (591)
..+.. +.+.|..+... .+++.|++|. +..++|++..+
T Consensus 179 ~~r~~-l~~~l~~l~~~---~g~tvi~vTHd~~~a~~~adri~vl 219 (355)
T 1z47_A 179 QIRRE-LRTFVRQVHDE---MGVTSVFVTHDQEEALEVADRVLVL 219 (355)
T ss_dssp HHHHH-HHHHHHHHHHH---HTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHH-HHHHHHHHHHh---cCCEEEEECCCHHHHHHhCCEEEEE
Confidence 98754 44667776542 1345555554 44567776554
No 35
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=6.2e-25 Score=233.04 Aligned_cols=177 Identities=17% Similarity=0.159 Sum_probs=132.9
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhhc--
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRL-- 469 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~l-- 469 (591)
...+|++++|++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++ .++|+|+|...+...+
T Consensus 15 ~~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 15 NFTALNNINLKIKDGE--FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SSEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred CEEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 3568999999999999 9999999999999999999999999999999999876 2499999975443333
Q ss_pred ----ccceeecCCCC-CHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 470 ----QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 470 ----~v~l~~~~~~~-d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
.+++...+... +....+.++++.+++.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~-----~~P~lLLL-DEP~s~LD~ 166 (362)
T 2it1_A 93 YKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALV-----KEPEVLLL-DEPLSNLDA 166 (362)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESGGGGSCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECccccCCH
Confidence 22221111111 112456677887777665 7888999999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+.. +.+.|..+... +.++.+.+|-+..+..++|++..+
T Consensus 167 ~~r~~-l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 207 (362)
T 2it1_A 167 LLRLE-VRAELKRLQKELGITTVYVTHDQAEALAMADRIAVI 207 (362)
T ss_dssp HHHHH-HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHH-HHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 98754 44677776543 333333444444445567776554
No 36
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.91 E-value=7.8e-25 Score=233.18 Aligned_cols=177 Identities=15% Similarity=0.114 Sum_probs=131.3
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------------eeeeecchhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTH 465 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------------RigaveQl~~~ 465 (591)
...+|++++|++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++. ++|+|+|...+
T Consensus 15 ~~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 15 EVTAVREMSLEVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp TEEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred CEEEEeeeEEEEcCCC--EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 3568999999999999 99999999999999999999999999999999987642 38999997544
Q ss_pred hhhc----ccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 466 ARRL----QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 466 ~~~l----~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
...+ ++.+....++... ...+.++++.+++.++ +..+..+||||+||++|||+|+ .+|+++|| |||
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~-----~~P~lLLL-DEP 166 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV-----RKPQVFLM-DEP 166 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHH-----TCCSEEEE-ECT
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-CCC
Confidence 3333 1212111112222 2456677777776554 7888999999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|++||+..+.. +.+.|..+... +.++.+.+|-+..+..++|++..+
T Consensus 167 ~s~LD~~~r~~-l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 213 (372)
T 1g29_1 167 LSNLDAKLRVR-MRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVM 213 (372)
T ss_dssp TTTSCHHHHHH-HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CccCCHHHHHH-HHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence 99999998754 44667776543 333333333333345567776554
No 37
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.91 E-value=8e-25 Score=233.01 Aligned_cols=177 Identities=15% Similarity=0.110 Sum_probs=129.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhhcc-
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~l~- 470 (591)
...+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++ .++|+|+|...+...+.
T Consensus 23 ~~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 23 NFTAVNKLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp TEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred CEEEEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 3568999999999999 9999999999999999999999999999999999876 24999999765444332
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 471 ---v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
+.+....++... ...+.++++.+++.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+
T Consensus 101 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~-----~~P~lLLL-DEP~s~LD~ 174 (372)
T 1v43_A 101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIV-----VEPDVLLM-DEPLSNLDA 174 (372)
T ss_dssp HHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHT-----TCCSEEEE-ESTTTTSCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCccCCH
Confidence 212111112222 2456677777776554 6788999999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 544 VDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 544 ~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
..+.. +.+.|..+... +.++.+.+|-+..+..++|++..+
T Consensus 175 ~~r~~-l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl 215 (372)
T 1v43_A 175 KLRVA-MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVM 215 (372)
T ss_dssp HHHHH-HHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HHHHH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 98754 44677776543 333333334433445567776554
No 38
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.91 E-value=4.7e-25 Score=233.34 Aligned_cols=174 Identities=18% Similarity=0.119 Sum_probs=130.4
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------------eeeeecchhhhhhhc
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARRL 469 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------------RigaveQl~~~~~~l 469 (591)
+|++++|++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++. ++|+|+|...+...+
T Consensus 20 vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 8999999999999 99999999999999999999999999999999987642 389999975443333
Q ss_pred ----ccceeecCCCCCH---HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 470 ----QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 470 ----~v~l~~~~~~~d~---~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
++.+....++... ...+.++++.+++.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++|
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~-----~~P~lLLL-DEP~s~L 171 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV-----KDPSLLLL-DEPFSNL 171 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTTTS
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCcccC
Confidence 1222111122222 2456677777776554 7888999999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 542 DAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|+..+.. +.+.|..+... +.++.+.+|-+..+..++|++..+
T Consensus 172 D~~~r~~-l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl 214 (353)
T 1oxx_K 172 DARMRDS-ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVL 214 (353)
T ss_dssp CGGGHHH-HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9998754 44667776542 333333444444445567876554
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.91 E-value=3.8e-25 Score=233.59 Aligned_cols=172 Identities=20% Similarity=0.168 Sum_probs=131.0
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc-------eeeeecchhhhhh------h
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHAR------R 468 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~-------RigaveQl~~~~~------~ 468 (591)
+|++++|++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++. ++|+|+|...+.. +
T Consensus 15 ~l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGE--YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTC--EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCC--EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHH
Confidence 8999999999999 99999999999999999999999999999999998863 4999999754333 3
Q ss_pred cccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 469 LQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 469 l~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
+.+.+...+.. .. ..+.++++.+++.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+..+.
T Consensus 93 l~~~~~~~~~~-~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~-----~~P~lLLL-DEP~s~LD~~~~~ 164 (348)
T 3d31_A 93 LEFGMRMKKIK-DP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV-----TNPKILLL-DEPLSALDPRTQE 164 (348)
T ss_dssp HHHHHHHHCCC-CH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT-----SCCSEEEE-ESSSTTSCHHHHH
T ss_pred HHHHHHHcCCC-HH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECccccCCHHHHH
Confidence 32222111111 22 566778888877665 7888999999999999999999 99999999 9999999999875
Q ss_pred HHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 548 SKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 548 ~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
. +.+.|+.+... +.++.+.+|-+..+..++|++..+
T Consensus 165 ~-l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl 201 (348)
T 3d31_A 165 N-AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201 (348)
T ss_dssp H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred H-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4 44777777542 333333333333344567776543
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.91 E-value=1e-24 Score=220.22 Aligned_cols=172 Identities=16% Similarity=0.121 Sum_probs=129.5
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhhhcc-
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ- 470 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~~l~- 470 (591)
.+|++++|++.+|+ +++|+|||||||||||++|+|++.|+ |+|.+.|.++. ++|+++|...+...+.
T Consensus 14 ~vl~~vsl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGE--ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 47999999999999 99999999999999999999999999 99999998752 4899999654332221
Q ss_pred ---cceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCc-------EEEEEecccC
Q 007747 471 ---VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD-------LVLFVGEALV 539 (591)
Q Consensus 471 ---v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd-------lILLVDEPt~ 539 (591)
+.+.. ..... ...+.++++.+++..+ +..+..+||||+||+.||++|+ .+|+ ++|| ||||+
T Consensus 91 ~e~l~~~~-~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p~~~~~~~~lllL-DEPts 162 (249)
T 2qi9_C 91 WHYLTLHQ-HDKTR-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL-----QITPQANPAGQLLLL-DEPMN 162 (249)
T ss_dssp HHHHHTTC-SSTTC-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH-----HHCTTTCTTCCEEEE-SSTTT
T ss_pred HHHHHHhh-ccCCc-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH-----cCCCcCCCCCeEEEE-ECCcc
Confidence 11111 11112 4456677777766543 6778899999999999999999 8999 9999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
|||+..+. .+.+.|..+...+.++.+.+|.+.-+..++|++..+
T Consensus 163 ~LD~~~~~-~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l 206 (249)
T 2qi9_C 163 SLDVAQQS-ALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL 206 (249)
T ss_dssp TCCHHHHH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred cCCHHHHH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999875 455778887654444444444444444567776543
No 41
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=1.9e-24 Score=218.70 Aligned_cols=172 Identities=16% Similarity=0.119 Sum_probs=128.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhh------hhcccce
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA------RRLQVPI 473 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~------~~l~v~l 473 (591)
..+|+++||++++|+ +++|+||||||||||+++|+|+++|+.|+|.+. .++|+++|...+. +++.+..
T Consensus 18 ~~vl~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~----~~i~~v~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGD--ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY----QSIGFVPQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp TEEEEEEEEEEETTC--EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC----SCEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred CeEEEEEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe----ccEEEEcCCCccCCCCCHHHHHHHhh
Confidence 468999999999999 999999999999999999999999999999832 3599999965432 2222211
Q ss_pred eec-C-C---CCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHH
Q 007747 474 FEK-G-Y---EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (591)
Q Consensus 474 ~~~-~-~---~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~ 547 (591)
... + + .......+.++++.+++..+ +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p~lllL-DEPts~LD~~~~~ 165 (253)
T 2nq2_C 92 STHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA-----SECKLILL-DEPTSALDLANQD 165 (253)
T ss_dssp GGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH-----TTCSEEEE-SSSSTTSCHHHHH
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccCCHHHHH
Confidence 100 1 0 11122455667777766543 6778899999999999999999 99999999 9999999999975
Q ss_pred HHHHHHHHHhhcC-CCCccceEEEeccccccCCcEEEE
Q 007747 548 SKFNQKLADLSSS-PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 548 ~~f~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vGal 584 (591)
. +.+.|..+... +.++.+.+|-+.-+..+||++..+
T Consensus 166 ~-l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l 202 (253)
T 2nq2_C 166 I-VLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLL 202 (253)
T ss_dssp H-HHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred H-HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4 44778777654 445555555555555667776554
No 42
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.90 E-value=5.1e-24 Score=214.73 Aligned_cols=169 Identities=19% Similarity=0.205 Sum_probs=120.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhh----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~---- 466 (591)
..+|+++||++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+.
T Consensus 22 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 99 (247)
T 2ff7_A 22 PVILDNINLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99 (247)
T ss_dssp CEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBH
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccH
Confidence 468999999999999 99999999999999999999999999999999998752 389999975432
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHhhhcC------------CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG------------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 467 -~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~------------~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
+++.+. .. ... ...+.++++.+.+.. .+.....+||||+||+.|||+|+ .+|+++||
T Consensus 100 ~enl~~~--~~--~~~-~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~-----~~p~lllL 169 (247)
T 2ff7_A 100 IDNISLA--NP--GMS-VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV-----NNPKILIF 169 (247)
T ss_dssp HHHHTTT--CT--TCC-HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT-----TCCSEEEE
T ss_pred HHHHhcc--CC--CCC-HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 222221 11 112 223344444433221 12345689999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+.. +.+.|..+. .+.++.+.+|-+.-+.. +|++..+
T Consensus 170 -DEPts~LD~~~~~~-i~~~l~~~~-~g~tviivtH~~~~~~~-~d~v~~l 216 (247)
T 2ff7_A 170 -DEATSALDYESEHV-IMRNMHKIC-KGRTVIIIAHRLSTVKN-ADRIIVM 216 (247)
T ss_dssp -CCCCSCCCHHHHHH-HHHHHHHHH-TTSEEEEECSSGGGGTT-SSEEEEE
T ss_pred -eCCcccCCHHHHHH-HHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 99999999999754 447777774 33333333333333433 6665443
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=2.5e-24 Score=217.08 Aligned_cols=176 Identities=16% Similarity=0.110 Sum_probs=121.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhh--hhcCCcEEEEcccccc----------eeeeecchhhhhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~--l~~~~G~V~i~~~Dt~----------RigaveQl~~~~~ 467 (591)
..+|+++||++.+|+ +++|+||||||||||++.|+|+ +.|+.|+|.+.|.++. ++++++|...+..
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 16 ETILKGVNLVVPKGE--VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred EEEEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 568999999999999 9999999999999999999998 7899999999998752 2778888654332
Q ss_pred ------hcccceee-cCCCCC---HHHHHHHHHHHhhh-cC-CCcchhc-cchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 468 ------RLQVPIFE-KGYEKD---PAIVAKEAIQEATR-NG-SDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 468 ------~l~v~l~~-~~~~~d---~~~~a~~al~~~~~-~~-~d~vliD-tSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
++...... ...... ....+.++++.+++ .. .+..+.. +||||+||+.||++|+ .+|+++||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~-----~~p~lllL- 167 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV-----LEPTYAVL- 167 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH-----HCCSEEEE-
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 22211100 111111 12345566766665 23 2566677 9999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc-CCcEEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI-DDKHYQW 584 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i-~d~vGal 584 (591)
||||+|||+..+.. +.+.|..+...+.++.+.+|-+.-+..+ +|++..+
T Consensus 168 DEPts~LD~~~~~~-l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l 217 (250)
T 2d2e_A 168 DETDSGLDIDALKV-VARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVM 217 (250)
T ss_dssp ECGGGTTCHHHHHH-HHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred eCCCcCCCHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence 99999999998754 4477777755433333333433334444 3665543
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.90 E-value=7.8e-24 Score=215.49 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=125.7
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc------eee-eecchhhh----hhh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSG-AVEQLRTH----ARR 468 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~------Rig-aveQl~~~----~~~ 468 (591)
..+|++++|+++ |+ +++|+|||||||||||++|+|++ |+.|+|.+.+.++. ++| +++|...+ .++
T Consensus 18 ~~il~~vsl~i~-Ge--~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~en 93 (263)
T 2pjz_A 18 RFSLENINLEVN-GE--KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDI 93 (263)
T ss_dssp EEEEEEEEEEEC-SS--EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHH
T ss_pred ceeEEeeeEEEC-CE--EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHH
Confidence 468999999999 99 99999999999999999999999 99999999997753 589 99997644 222
Q ss_pred cccceeecCCCCCHHHHHHHHHHHhhhc-CC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 469 LQVPIFEKGYEKDPAIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 469 l~v~l~~~~~~~d~~~~a~~al~~~~~~-~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+ .++...+.. ....+.++++.+++. .. +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+
T Consensus 94 l--~~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p~lllL-DEPts~LD~~~~ 164 (263)
T 2pjz_A 94 V--YLYEELKGL-DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALA-----SQPEIVGL-DEPFENVDAARR 164 (263)
T ss_dssp H--HHHHHHTCC-CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHH-----TCCSEEEE-ECTTTTCCHHHH
T ss_pred H--HHhhhhcch-HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCccccCHHHH
Confidence 2 121111122 234456677777664 43 6778899999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEeccccccCC-cEEEE
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDD-KHYQW 584 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d-~vGal 584 (591)
.. +.+.|..+.. ++.+.+|-+.-+..++| ++..+
T Consensus 165 ~~-l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l 199 (263)
T 2pjz_A 165 HV-ISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFL 199 (263)
T ss_dssp HH-HHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEE
T ss_pred HH-HHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEE
Confidence 54 4466665543 33444444444556677 66543
No 45
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.89 E-value=7.6e-24 Score=215.78 Aligned_cols=173 Identities=20% Similarity=0.142 Sum_probs=123.9
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh--hcCCcEEEEcccccc----------eeeeecchhhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF----------RSGAVEQLRTHA 466 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--~~~~G~V~i~~~Dt~----------RigaveQl~~~~ 466 (591)
...+|++|+|++.+|+ +++|+||||||||||+++|+|++ .|+.|+|.+.|.++. ++|+++|...+.
T Consensus 32 ~~~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 32 DKAILRGLSLDVHPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp TEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred CEEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 3568999999999999 99999999999999999999984 688999999998752 288999976432
Q ss_pred hh------cccce--ee--cCC-CCCH---HHHHHHHHHHhhhc-CC-Ccchh-ccchhHHHHHHHHHHHHhchhcCCCc
Q 007747 467 RR------LQVPI--FE--KGY-EKDP---AIVAKEAIQEATRN-GS-DVVLV-DTAGRMQDNEPLMRALSKLIYLNNPD 529 (591)
Q Consensus 467 ~~------l~v~l--~~--~~~-~~d~---~~~a~~al~~~~~~-~~-d~vli-DtSGg~~qr~~LaraL~kl~~~~~Pd 529 (591)
.. +.... .. .+. .... ...+.++++.+++. .+ +..+. .+||||+||+.||++|+ .+|+
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~-----~~p~ 184 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV-----LEPE 184 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH-----HCCS
T ss_pred ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH-----hCCC
Confidence 22 11111 00 010 1111 23456677776664 23 55555 59999999999999999 9999
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc----cccc-CCcEEEE
Q 007747 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTI-DDKHYQW 584 (591)
Q Consensus 530 lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i-~d~vGal 584 (591)
++|| ||||+|||+..+.. +.+.|..+... +.+.+++|. +..+ +|++..+
T Consensus 185 lLlL-DEPts~LD~~~~~~-l~~~l~~l~~~----g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 185 LCIL-DESDSGLDIDALKV-VADGVNSLRDG----KRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp EEEE-ESTTTTCCHHHHHH-HHHHHHTTCCS----SCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred EEEE-eCCCCCCCHHHHHH-HHHHHHHHHhc----CCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 9999 99999999998754 44666666443 445555554 4443 6766543
No 46
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.89 E-value=1.6e-23 Score=213.93 Aligned_cols=170 Identities=20% Similarity=0.178 Sum_probs=120.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++|+|++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++. ++|+++|...+
T Consensus 32 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 109 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGK--VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109 (271)
T ss_dssp SCCEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBH
T ss_pred ceeeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccH
Confidence 568999999999999 99999999999999999999999999999999998752 38999996533
Q ss_pred hhhcccceeecCCCC-CHHH-H-----HHHHHHHh--hhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEe
Q 007747 466 ARRLQVPIFEKGYEK-DPAI-V-----AKEAIQEA--TRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~-d~~~-~-----a~~al~~~--~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVD 535 (591)
.+++.+.. ..+.. .... . +.+.++.+ ++.. .+..+..+||||+||+.|||+|+ .+|+++|| |
T Consensus 110 ~enl~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~-----~~p~lllL-D 181 (271)
T 2ixe_A 110 RENIAYGL--TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI-----RKPRLLIL-D 181 (271)
T ss_dssp HHHHHTTC--SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT-----TCCSEEEE-E
T ss_pred HHHHhhhc--ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh-----cCCCEEEE-E
Confidence 23332211 11111 1100 0 11223332 2222 35677899999999999999999 99999999 9
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc----ccccCCcEEEE
Q 007747 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK----FDTIDDKHYQW 584 (591)
Q Consensus 536 EPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK----~D~i~d~vGal 584 (591)
|||+|||+..+.. +.+.|..+... .+.+.|++|. +.. +|++..|
T Consensus 182 EPts~LD~~~~~~-i~~~l~~~~~~---~g~tviivtHd~~~~~~-~d~v~~l 229 (271)
T 2ixe_A 182 NATSALDAGNQLR-VQRLLYESPEW---ASRTVLLITQQLSLAER-AHHILFL 229 (271)
T ss_dssp STTTTCCHHHHHH-HHHHHHHCTTT---TTSEEEEECSCHHHHTT-CSEEEEE
T ss_pred CCccCCCHHHHHH-HHHHHHHHHhh---cCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 9999999999754 44666666432 1344555554 333 5665443
No 47
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.88 E-value=9.5e-24 Score=211.92 Aligned_cols=170 Identities=19% Similarity=0.199 Sum_probs=121.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~----- 465 (591)
..+|+++||++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.|.++ .++|+++|...+
T Consensus 15 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv 92 (243)
T 1mv5_A 15 EQILRDISFEAQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI 92 (243)
T ss_dssp SCSEEEEEEEECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred CceEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccH
Confidence 468999999999999 9999999999999999999999999999999999775 138999997543
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhhcCC-C-----------cchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-D-----------VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d-----------~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++.+.. . .... ...+.++++.+.+..+ + .....+||||+||+.|||+|+ .+|+++||
T Consensus 93 ~enl~~~~--~-~~~~-~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~-----~~p~lllL 163 (243)
T 1mv5_A 93 RENLTYGL--E-GDYT-DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL-----RNPKILML 163 (243)
T ss_dssp HHHTTSCT--T-SCSC-HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhhhc--c-CCCC-HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 23322211 1 1122 2334556666554432 2 224589999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
||||+|||+..+.. +.+.|..+. .+.++.+.+|-+.-+. .+|++..+
T Consensus 164 -DEPts~LD~~~~~~-i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v~~l 210 (243)
T 1mv5_A 164 -DEATASLDSESESM-VQKALDSLM-KGRTTLVIAHRLSTIV-DADKIYFI 210 (243)
T ss_dssp -ECCSCSSCSSSCCH-HHHHHHHHH-TTSEEEEECCSHHHHH-HCSEEEEE
T ss_pred -ECCcccCCHHHHHH-HHHHHHHhc-CCCEEEEEeCChHHHH-hCCEEEEE
Confidence 99999999988744 446777775 3333333333333233 25665443
No 48
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.88 E-value=3.8e-23 Score=209.80 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=117.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++||++++|+ +++|+||||||||||+++|+|++.+ .|+|.+.|.++. ++|+++|...+
T Consensus 33 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 109 (260)
T 2ghi_A 33 HRTLKSINFFIPSGT--TCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETI 109 (260)
T ss_dssp SCSEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEH
T ss_pred CceeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCH
Confidence 458999999999999 9999999999999999999999987 899999998752 38999997543
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhhcC----C--------CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG----S--------DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~----~--------d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++.+.. ..... ..+.++++.+.+.. . +..+..+||||+||+.|||+|+ .+|+++||
T Consensus 110 ~enl~~~~----~~~~~-~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p~lllL 179 (260)
T 2ghi_A 110 KYNILYGK----LDATD-EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL-----KDPKIVIF 179 (260)
T ss_dssp HHHHHTTC----TTCCH-HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhccC----CCCCH-HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 23322211 11122 22334444332211 1 2345689999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||||+|||+..+. .+.+.|..+.. +.++.+.+|-+.-+.. +|++..
T Consensus 180 -DEPts~LD~~~~~-~i~~~l~~l~~-~~tviivtH~~~~~~~-~d~i~~ 225 (260)
T 2ghi_A 180 -DEATSSLDSKTEY-LFQKAVEDLRK-NRTLIIIAHRLSTISS-AESIIL 225 (260)
T ss_dssp -ECCCCTTCHHHHH-HHHHHHHHHTT-TSEEEEECSSGGGSTT-CSEEEE
T ss_pred -ECccccCCHHHHH-HHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEE
Confidence 9999999999874 45577777753 3333333333332332 565543
No 49
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.88 E-value=6.5e-23 Score=205.30 Aligned_cols=134 Identities=19% Similarity=0.120 Sum_probs=101.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh-----hhhccccee
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 474 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~-----~~~l~v~l~ 474 (591)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.| ++|+++|...+ .+++.+.
T Consensus 18 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~~~~~tv~enl~~~-- 89 (237)
T 2cbz_A 18 PPTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----SVAYVPQQAWIQNDSLRENILFG-- 89 (237)
T ss_dssp CCSEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----CEEEECSSCCCCSEEHHHHHHTT--
T ss_pred CceeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----EEEEEcCCCcCCCcCHHHHhhCc--
Confidence 468999999999999 9999999999999999999999999999999988 59999997532 2222221
Q ss_pred ecCCCCCHHHHHHHHHH---HhhhcC------CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHH
Q 007747 475 EKGYEKDPAIVAKEAIQ---EATRNG------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~---~~~~~~------~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 545 (591)
. .........+.+++. .+.... .+..+..+||||+||+.|||+|+ .+|+++|| ||||+|||+..
T Consensus 90 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p~lllL-DEPts~LD~~~ 162 (237)
T 2cbz_A 90 C-QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY-----SNADIYLF-DDPLSAVDAHV 162 (237)
T ss_dssp S-CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH-----HCCSEEEE-ESTTTTSCHHH
T ss_pred c-ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-eCcccccCHHH
Confidence 1 111222222222211 111111 23556789999999999999999 99999999 99999999988
Q ss_pred HHH
Q 007747 546 QLS 548 (591)
Q Consensus 546 q~~ 548 (591)
+..
T Consensus 163 ~~~ 165 (237)
T 2cbz_A 163 GKH 165 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 50
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.87 E-value=3.6e-23 Score=206.02 Aligned_cols=131 Identities=16% Similarity=0.173 Sum_probs=99.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh-----hhhccccee
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 474 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~-----~~~l~v~l~ 474 (591)
..+|++++|++++|+ +++|+||||||||||+++|+|++.|+.|+|.+.+ ++|+++|...+ .+++.+..
T Consensus 21 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----~i~~v~q~~~~~~~tv~enl~~~~- 93 (229)
T 2pze_A 21 TPVLKDINFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQFSWIMPGTIKENIIFGV- 93 (229)
T ss_dssp CCSEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----CEEEECSSCCCCSBCHHHHHHTTS-
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----EEEEEecCCcccCCCHHHHhhccC-
Confidence 568999999999999 9999999999999999999999999999999987 69999996543 22222211
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc----CC--------CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 475 EKGYEKDPAIVAKEAIQEATRN----GS--------DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~~~----~~--------d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
..... ...++++.+... .+ +.....+||||+||+.|||+|+ .+|+++|| ||||+|||
T Consensus 94 ----~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~-----~~p~lllL-DEPts~LD 162 (229)
T 2pze_A 94 ----SYDEY-RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY-----KDADLYLL-DSPFGYLD 162 (229)
T ss_dssp ----CCCHH-HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH-----SCCSEEEE-ESTTTTSC
T ss_pred ----CcChH-HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-ECcccCCC
Confidence 11111 112222222111 01 1224689999999999999999 99999999 99999999
Q ss_pred HHHHHH
Q 007747 543 AVDQLS 548 (591)
Q Consensus 543 ~~~q~~ 548 (591)
+..+..
T Consensus 163 ~~~~~~ 168 (229)
T 2pze_A 163 VLTEKE 168 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998743
No 51
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=4e-23 Score=214.64 Aligned_cols=146 Identities=20% Similarity=0.215 Sum_probs=110.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++|||++++|+ +++||||||||||||+++|+|++.|+.|+|.+.|.|+. ++|+|+|...+
T Consensus 67 ~~vL~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv 144 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQ--TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144 (306)
T ss_dssp CEEEEEEEEEECTTC--EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEH
T ss_pred CceeeeeeEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccH
Confidence 568999999999999 99999999999999999999999999999999998872 49999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhhc--------CCC----cchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~d----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++.+. .. .... ..+.++++.+.+. +++ .....+||||+||++|||+|. .+|+++||
T Consensus 145 ~eNi~~~--~~--~~~~-~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~-----~~p~iLlL 214 (306)
T 3nh6_A 145 ADNIRYG--RV--TAGN-DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL-----KAPGIILL 214 (306)
T ss_dssp HHHHHTT--ST--TCCH-HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHHhh--cc--cCCH-HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 2332221 11 1112 2233333333221 122 233579999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
||||++||+..+.. +.+.|..+..
T Consensus 215 -DEPts~LD~~~~~~-i~~~l~~l~~ 238 (306)
T 3nh6_A 215 -DEATSALDTSNERA-IQASLAKVCA 238 (306)
T ss_dssp -ECCSSCCCHHHHHH-HHHHHHHHHT
T ss_pred -ECCcccCCHHHHHH-HHHHHHHHcC
Confidence 99999999998754 4467777654
No 52
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.87 E-value=2.3e-22 Score=207.92 Aligned_cols=227 Identities=23% Similarity=0.265 Sum_probs=166.9
Q ss_pred ChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccc
Q 007747 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESV-AASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAA 409 (591)
Q Consensus 331 ~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v-~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~ 409 (591)
...++++.+++++++|+++||+.+++.+|++.+ +..+.+... . .+.+..++.+.|.+++.+... +.+.
T Consensus 34 ~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~l~~~l~~~~~------~~~~ 102 (296)
T 2px0_A 34 YQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGL---T--EENVVGKLQEILCDMLPSADK------WQEP 102 (296)
T ss_dssp -----CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSSCC---C--TTTHHHHHHHHHHTTSCCGGG------SCCC
T ss_pred cccccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhcccCC---C--HHHHHHHHHHHHHHHhCCccc------cccc
Confidence 344677899999999999999999999999999 565544322 1 146778889999999875432 1221
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc-EEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHH
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 488 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G-~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~ 488 (591)
.+|+ +++|+|||||||||++++||+++.+..| +|.+.++|+||.++++|+..+.+.++++++.. .++.. ...
T Consensus 103 -~~g~--vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~~-l~~ 175 (296)
T 2px0_A 103 -IHSK--YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKEE-FQQ 175 (296)
T ss_dssp -CCSS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHHH-HHH
T ss_pred -CCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHHH-HHH
Confidence 2455 9999999999999999999999998555 99999999999999999999999888887543 22322 344
Q ss_pred HHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceE
Q 007747 489 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 568 (591)
Q Consensus 489 al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~ 568 (591)
++..+ .++|++++||+|+......++..|.+++....|+.+++|-+++.+++... .+........+++
T Consensus 176 al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~----------~~~~~~~~l~~~g 243 (296)
T 2px0_A 176 AKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMK----------HIVKRFSSVPVNQ 243 (296)
T ss_dssp HHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHH----------HHTTTTSSSCCCE
T ss_pred HHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHH----------HHHHHHhcCCCCE
Confidence 55543 67899999999999877778888877766556877777677777643222 2222223457899
Q ss_pred EEeccccccCCcEEE-EEecc
Q 007747 569 ILLTKFDTIDDKHYQ-WSMCR 588 (591)
Q Consensus 569 IIlTK~D~i~d~vGa-ls~~~ 588 (591)
+|+||+|.. .++|. +++.+
T Consensus 244 iVltk~D~~-~~~g~~~~~~~ 263 (296)
T 2px0_A 244 YIFTKIDET-TSLGSVFNILA 263 (296)
T ss_dssp EEEECTTTC-SCCHHHHHHHH
T ss_pred EEEeCCCcc-cchhHHHHHHH
Confidence 999999995 55665 66544
No 53
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=217.47 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=116.8
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhh--
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHA-- 466 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~-- 466 (591)
....+|++|||++.+|+ +++|+|||||||||||++|+|++. +.|+|.|.|.|+ .++|+|+|...+.
T Consensus 32 ~~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~ 108 (390)
T 3gd7_A 32 GGNAILENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG 108 (390)
T ss_dssp SSCCSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSE
T ss_pred CCeEEeeceeEEEcCCC--EEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCcc
Confidence 34578999999999999 999999999999999999999987 889999999886 2489999976432
Q ss_pred ---hhcccceeecCCCCCHHHHHHHHHHHhhhcCC-Ccchhc-----------cchhHHHHHHHHHHHHhchhcCCCcEE
Q 007747 467 ---RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVD-----------TAGRMQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 467 ---~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliD-----------tSGg~~qr~~LaraL~kl~~~~~PdlI 531 (591)
+++. ++ .......+.++++.+++..+ +..+.. +||||+||++|||+|+ .+|+++
T Consensus 109 tv~enl~--~~----~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~-----~~P~lL 177 (390)
T 3gd7_A 109 TFRKNLD--PN----AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL-----SKAKIL 177 (390)
T ss_dssp EHHHHHC--TT----CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH-----TTCCEE
T ss_pred CHHHHhh--hc----cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 2221 11 11223445566666655433 444444 9999999999999999 999999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
|| ||||++||+..+.. +.+.|..+.. ..+.|++|.
T Consensus 178 LL-DEPts~LD~~~~~~-l~~~l~~~~~-----~~tvi~vtH 212 (390)
T 3gd7_A 178 LL-DEPSAHLDPVTYQI-IRRTLKQAFA-----DCTVILCEA 212 (390)
T ss_dssp EE-ESHHHHSCHHHHHH-HHHHHHTTTT-----TSCEEEECS
T ss_pred EE-eCCccCCCHHHHHH-HHHHHHHHhC-----CCEEEEEEc
Confidence 99 99999999988754 3355554321 355566654
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.84 E-value=3.7e-22 Score=205.85 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=97.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhh-----hhccccee
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----RRLQVPIF 474 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~-----~~l~v~l~ 474 (591)
..+|+++||++++|+ +++|+|||||||||||++|+|++.|+.|+|.+.+ ++|+++|...+. +++. .
T Consensus 51 ~~vl~~isl~i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~l~~~tv~enl~-~-- 121 (290)
T 2bbs_A 51 TPVLKDINFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQNSWIMPGTIKENII-G-- 121 (290)
T ss_dssp CCSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----CEEEECSSCCCCSSBHHHHHH-T--
T ss_pred ceEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----EEEEEeCCCccCcccHHHHhh-C--
Confidence 458999999999999 9999999999999999999999999999999987 689999965432 2222 1
Q ss_pred ecCCCCCHHHHHHHHHHHhhhc----CC--------CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 475 EKGYEKDPAIVAKEAIQEATRN----GS--------DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~~~----~~--------d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
...... ...++++.+... .+ +.....+||||+||+.|||+|+ .+|+++|| ||||+|||
T Consensus 122 ---~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~-----~~p~lllL-DEPts~LD 191 (290)
T 2bbs_A 122 ---VSYDEY-RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY-----KDADLYLL-DSPFGYLD 191 (290)
T ss_dssp ---TCCCHH-HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHH-----SCCSEEEE-ESTTTTCC
T ss_pred ---cccchH-HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHH-----CCCCEEEE-ECCcccCC
Confidence 111111 112222222111 11 1223689999999999999999 99999999 99999999
Q ss_pred HHHHHH
Q 007747 543 AVDQLS 548 (591)
Q Consensus 543 ~~~q~~ 548 (591)
+..+..
T Consensus 192 ~~~~~~ 197 (290)
T 2bbs_A 192 VLTEKE 197 (290)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 55
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.84 E-value=3.9e-21 Score=215.45 Aligned_cols=169 Identities=20% Similarity=0.173 Sum_probs=122.8
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++||++++|+ +++|+|||||||||+++.|+|++.|+.|+|.+.|.|+. ++|+|+|...+
T Consensus 356 ~~~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 433 (582)
T 3b5x_A 356 KPALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433 (582)
T ss_pred ccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccH
Confidence 568999999999999 99999999999999999999999999999999998762 49999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhhc--------CCC----cchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~d----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++. +... ...+ .+.+.++++.++.. +++ .....+||||+||+.|||+|. .+|+++||
T Consensus 434 ~eni~--~~~~-~~~~-~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~-----~~p~illl 504 (582)
T 3b5x_A 434 ANNIA--YAAE-GEYT-REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL-----RDAPVLIL 504 (582)
T ss_pred HHHHh--ccCC-CCCC-HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 23322 2110 1112 23345555544332 222 223678999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||||++||+..+.. +.+.|..+.. ++++.+..|-+.-+. .+|++-.
T Consensus 505 -DEpts~LD~~~~~~-i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~ 550 (582)
T 3b5x_A 505 -DEATSALDTESERA-IQAALDELQK-NKTVLVIAHRLSTIE-QADEILV 550 (582)
T ss_pred -ECccccCCHHHHHH-HHHHHHHHcC-CCEEEEEecCHHHHH-hCCEEEE
Confidence 99999999998754 4577777653 344444444444444 3566544
No 56
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.83 E-value=3.4e-21 Score=216.45 Aligned_cols=149 Identities=23% Similarity=0.255 Sum_probs=113.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++||++++|+ +++|+|||||||||+++.|+|++.|+.|+|.+.|.|+. ++|+|+|...+
T Consensus 357 ~~vl~~isl~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 434 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGS--VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSI 434 (595)
T ss_dssp SEEEEEEEEEECTTC--EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBH
T ss_pred CccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCH
Confidence 358999999999999 99999999999999999999999999999999998862 48999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhhc--------CCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++... ...+.....+.+.++++.++.. +++..+ ..+||||+||+.|||+|. .+|+++||
T Consensus 435 ~eni~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~-----~~p~illl 507 (595)
T 2yl4_A 435 AENIAYG--ADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL-----KNPKILLL 507 (595)
T ss_dssp HHHHHTT--SSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhhc--CCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 3333221 1111111223345566554321 233333 689999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
||||++||+..+. .+.+.|..+..
T Consensus 508 -DEpts~LD~~~~~-~i~~~l~~~~~ 531 (595)
T 2yl4_A 508 -DEATSALDAENEY-LVQEALDRLMD 531 (595)
T ss_dssp -ECCCSSCCHHHHH-HHHHHHHHHHT
T ss_pred -ECcccCCCHHHHH-HHHHHHHHHhc
Confidence 9999999999874 45577777754
No 57
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.83 E-value=4.6e-21 Score=214.89 Aligned_cols=169 Identities=21% Similarity=0.208 Sum_probs=121.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++||++++|+ +++|+|||||||||+++.|+|++.|+.|+|.+.|.|+. ++|+++|...+
T Consensus 356 ~~~l~~v~~~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 433 (582)
T 3b60_A 356 VPALRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433 (582)
T ss_dssp CCSEEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBH
T ss_pred CccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCH
Confidence 568999999999999 99999999999999999999999999999999998862 49999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhhc--------CCC----cchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~d----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++... .. ...+. +.+.++++.++.. +++ .....+||||+||+.|||+|. .+|+++||
T Consensus 434 ~eni~~~--~~-~~~~~-~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~-----~~p~illl 504 (582)
T 3b60_A 434 ANNIAYA--RT-EEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL-----RDSPILIL 504 (582)
T ss_dssp HHHHHTT--TT-SCCCH-HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhcc--CC-CCCCH-HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 3332221 10 11222 3344555443321 122 234679999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||||++||+..+.. +.+.+..+.. ++++.+..|-+.-+. .||++-.
T Consensus 505 -DEpts~LD~~~~~~-i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i~~ 550 (582)
T 3b60_A 505 -DEATSALDTESERA-IQAALDELQK-NRTSLVIAHRLSTIE-QADEIVV 550 (582)
T ss_dssp -ETTTSSCCHHHHHH-HHHHHHHHHT-TSEEEEECSCGGGTT-TCSEEEE
T ss_pred -ECccccCCHHHHHH-HHHHHHHHhC-CCEEEEEeccHHHHH-hCCEEEE
Confidence 99999999998754 5577777754 333333333333333 3566543
No 58
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.82 E-value=5.6e-21 Score=214.08 Aligned_cols=147 Identities=22% Similarity=0.279 Sum_probs=111.4
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh----
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH---- 465 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~---- 465 (591)
...+|+++||++++|+ +++|+|||||||||+++.|+|++.|+.|+|.+.|.|+. ++|+++|...+
T Consensus 353 ~~~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 430 (578)
T 4a82_A 353 EAPILKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 430 (578)
T ss_dssp SCCSEEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSB
T ss_pred CCcceeeeEEEECCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCccc
Confidence 3468999999999999 99999999999999999999999999999999998873 49999997533
Q ss_pred -hhhcccceeecCCCCCHHHHHHHHHHHhhhc--------CCC----cchhccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 466 -ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 466 -~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~d----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
.+++... .. .... ..+.++++.+... +++ .....+||||+||+.|||+|. .+|+++|
T Consensus 431 v~eni~~~---~~-~~~~-~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~-----~~p~ill 500 (578)
T 4a82_A 431 VKENILLG---RP-TATD-EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL-----NNPPILI 500 (578)
T ss_dssp HHHHHGGG---CS-SCCH-HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH-----HCCSEEE
T ss_pred HHHHHhcC---CC-CCCH-HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH-----cCCCEEE
Confidence 3333221 11 1122 2233444433221 222 233578999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
| ||||+++|+..+. .+.+.+..+..
T Consensus 501 l-DEpts~LD~~~~~-~i~~~l~~~~~ 525 (578)
T 4a82_A 501 L-DEATSALDLESES-IIQEALDVLSK 525 (578)
T ss_dssp E-ESTTTTCCHHHHH-HHHHHHHHHTT
T ss_pred E-ECccccCCHHHHH-HHHHHHHHHcC
Confidence 9 9999999998864 45577776643
No 59
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=9.9e-21 Score=212.53 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=120.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh----
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH---- 465 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~---- 465 (591)
...+|+++||++++|+ +++|+|||||||||+++.|+|++.|+.|+|.+.|.|+. ++|+|+|...+
T Consensus 355 ~~~~l~~isl~i~~Ge--~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~t 432 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGS--LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGT 432 (587)
T ss_dssp SCCSEEEEEEEECTTC--EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEE
T ss_pred CCcceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCcc
Confidence 3568999999999999 99999999999999999999999999999999998872 49999997643
Q ss_pred -hhhcccceeecCCCCCHHHHHHHHHHHhhhc--------CCC----cchhccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 466 -ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 466 -~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~d----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
.+++... .. ..... .+.++++.+... +++ .....+||||+||+.|||+|. .+|+++|
T Consensus 433 v~eni~~~--~~--~~~~~-~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~-----~~p~ill 502 (587)
T 3qf4_A 433 IKENLKWG--RE--DATDD-EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV-----KKPKVLI 502 (587)
T ss_dssp HHHHHTTT--CS--SCCHH-HHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH-----TCCSEEE
T ss_pred HHHHHhcc--CC--CCCHH-HHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH-----cCCCEEE
Confidence 3333211 11 11222 223333332211 222 334679999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
| ||||+++|+......+ +.+..+.. ++++.+..|-+.-+. .+|++-.
T Consensus 503 l-DEpts~LD~~~~~~i~-~~l~~~~~-~~tvi~itH~l~~~~-~~d~i~v 549 (587)
T 3qf4_A 503 L-DDCTSSVDPITEKRIL-DGLKRYTK-GCTTFIITQKIPTAL-LADKILV 549 (587)
T ss_dssp E-ESCCTTSCHHHHHHHH-HHHHHHST-TCEEEEEESCHHHHT-TSSEEEE
T ss_pred E-ECCcccCCHHHHHHHH-HHHHHhCC-CCEEEEEecChHHHH-hCCEEEE
Confidence 9 9999999999875444 66766643 333333333333343 3566543
No 60
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=6.5e-21 Score=214.40 Aligned_cols=145 Identities=20% Similarity=0.221 Sum_probs=109.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|+++||++++|+ +++|+|||||||||+++.|+|++.|+.|+|.+.|.|+. ++|+++|...+
T Consensus 368 ~~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 445 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQ--KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTV 445 (598)
T ss_dssp SCSCCSEEEECCTTC--EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBH
T ss_pred CccccceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccH
Confidence 458999999999999 99999999999999999999999999999999998873 49999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhhc--------CCCc----chhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDV----VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~--------~~d~----vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++ .+.......+ .+.++++.+... +++. ....+||||+||+.|||+|. .+|+++||
T Consensus 446 ~eni--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~-----~~p~illl 515 (598)
T 3qf4_B 446 KENL--KYGNPGATDE---EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL-----ANPKILIL 515 (598)
T ss_dssp HHHH--HSSSTTCCTT---HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH-----TCCSEEEE
T ss_pred HHHH--hcCCCCCCHH---HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 2332 2211111111 123333222111 1221 22578999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhh
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||++||+..... +.+.+..+.
T Consensus 516 -DEpts~LD~~~~~~-i~~~l~~~~ 538 (598)
T 3qf4_B 516 -DEATSNVDTKTEKS-IQAAMWKLM 538 (598)
T ss_dssp -CCCCTTCCHHHHHH-HHHHHHHHH
T ss_pred -ECCccCCCHHHHHH-HHHHHHHHc
Confidence 99999999998754 446777765
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.81 E-value=1.1e-20 Score=210.10 Aligned_cols=168 Identities=14% Similarity=0.080 Sum_probs=120.4
Q ss_pred ccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhh------hhhhcccceeec
Q 007747 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT------HARRLQVPIFEK 476 (591)
Q Consensus 403 L~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~------~~~~l~v~l~~~ 476 (591)
|..+++++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+. ++++++|... ..+++.. ...
T Consensus 284 l~~~~~~i~~Ge--i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~i~~~~q~~~~~~~~tv~~~l~~--~~~ 356 (538)
T 3ozx_A 284 LVVDNGEAKEGE--IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---ILSYKPQRIFPNYDGTVQQYLEN--ASK 356 (538)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---CEEEECSSCCCCCSSBHHHHHHH--HCS
T ss_pred EEeccceECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---eeEeechhcccccCCCHHHHHHH--hhh
Confidence 445566788999 99999999999999999999999999999987654 4678887432 1222211 111
Q ss_pred CCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHH
Q 007747 477 GYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (591)
Q Consensus 477 ~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~ 555 (591)
.+.......+.++++.+.+... +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+...+ +.|.
T Consensus 357 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~-----~~p~lLlL-DEPT~gLD~~~~~~i~-~~l~ 429 (538)
T 3ozx_A 357 DALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLA-----KEADLYVL-DQPSSYLDVEERYIVA-KAIK 429 (538)
T ss_dssp STTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH-----SCCSEEEE-ESTTTTCCHHHHHHHH-HHHH
T ss_pred hccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccCCCHHHHHHHH-HHHH
Confidence 1111112334555555555443 6888999999999999999999 99999999 9999999999985544 7777
Q ss_pred Hhhc-CCCCccceEEEeccccccCCcEEEE
Q 007747 556 DLSS-SPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 556 ~l~~-~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++.. .+.++.+.+|-+.-+..+||++..+
T Consensus 430 ~l~~~~g~tvi~vsHdl~~~~~~aDri~vl 459 (538)
T 3ozx_A 430 RVTRERKAVTFIIDHDLSIHDYIADRIIVF 459 (538)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 7754 3334444444455566778887664
No 62
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.80 E-value=1.3e-20 Score=212.29 Aligned_cols=168 Identities=16% Similarity=0.122 Sum_probs=121.0
Q ss_pred ccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccc----ee-ecC
Q 007747 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP----IF-EKG 477 (591)
Q Consensus 403 L~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~----l~-~~~ 477 (591)
|+.++|++.+|+ +++|+|||||||||||+.|+|++.|+.|+|.+ ..++|+++|.......+.+. .. ...
T Consensus 372 l~~~~~~v~~Ge--i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 445 (607)
T 3bk7_A 372 LEVEPGEIRKGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK 445 (607)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH
T ss_pred EEecccccCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE----eeEEEEEecCccCCCCCcHHHHHHhhhccC
Confidence 444555578999 99999999999999999999999999999986 24699999975332111110 00 000
Q ss_pred CCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q 007747 478 YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (591)
Q Consensus 478 ~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~ 556 (591)
+ .. ...+.++++.+++... +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+... .+.|..
T Consensus 446 ~-~~-~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~-----~~p~lLlL-DEPt~~LD~~~~~~l-~~~l~~ 516 (607)
T 3bk7_A 446 L-NS-NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL-----RDADIYLL-DEPSAYLDVEQRLAV-SRAIRH 516 (607)
T ss_dssp H-HC-HHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHT-----SCCSEEEE-ECTTTTCCHHHHHHH-HHHHHH
T ss_pred C-CH-HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCccCCCHHHHHHH-HHHHHH
Confidence 0 01 2345566777666544 6788899999999999999999 99999999 999999999998554 477777
Q ss_pred hhc-CCCCccceEEEeccccccCCcEEEEE
Q 007747 557 LSS-SPNPQLIDGILLTKFDTIDDKHYQWS 585 (591)
Q Consensus 557 l~~-~~~~~~it~IIlTK~D~i~d~vGals 585 (591)
+.. .+.++.+.+|-+.-+..++|++..+.
T Consensus 517 l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 517 LMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 753 34444444444455566778776543
No 63
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.80 E-value=1.9e-20 Score=208.32 Aligned_cols=174 Identities=18% Similarity=0.132 Sum_probs=117.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEE---------EEccccc-----------ceeeeec
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV---------MMAACDT-----------FRSGAVE 460 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V---------~i~~~Dt-----------~Rigave 460 (591)
.+|.+++ .+.+|+ +++|+||||||||||+++|+|++.|+.|++ .+.|.+. .++++++
T Consensus 36 ~~l~~vs-~i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4789999 899999 999999999999999999999999999884 2233221 1345555
Q ss_pred chhhhhhhcc-cceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 461 QLRTHARRLQ-VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 461 Ql~~~~~~l~-v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
|.......+. ..+.......+....+.++++.+++... +..+.++||||+||+.||++|+ .+|+++|| ||||
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~-----~~P~lLlL-DEPT 186 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL-----RNATFYFF-DEPS 186 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH-----SCCSEEEE-ESTT
T ss_pred hhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCc
Confidence 5322111100 0000000000001234556666666543 6788899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++||+..+...+ +.|..+...+.++.+..|-+.-++.+||++..+
T Consensus 187 s~LD~~~~~~l~-~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 187 SYLDIRQRLNAA-RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231 (538)
T ss_dssp TTCCHHHHHHHH-HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999875544 778887664333333333334456677877554
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.80 E-value=1.3e-20 Score=209.58 Aligned_cols=168 Identities=15% Similarity=0.113 Sum_probs=117.8
Q ss_pred ccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccc----ee-ecC
Q 007747 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP----IF-EKG 477 (591)
Q Consensus 403 L~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~----l~-~~~ 477 (591)
|+.++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+ ..++|+++|.......+.+. .. ...
T Consensus 302 l~~~~~~i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~ 375 (538)
T 1yqt_A 302 LEVEPGEIKKGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----DLTVAYKPQYIKADYEGTVYELLSKIDASK 375 (538)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH
T ss_pred EEeCccccCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE----CceEEEEecCCcCCCCCcHHHHHHhhhccC
Confidence 445555668999 99999999999999999999999999999986 24699999975332111110 00 000
Q ss_pred CCCCHHHHHHHHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHH
Q 007747 478 YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (591)
Q Consensus 478 ~~~d~~~~a~~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~ 556 (591)
+ .+ ...+.++++.+.+.. .+..+..+|||++||+.||++|+ .+|+++|| ||||+|||+..+...+ +.|.+
T Consensus 376 ~-~~-~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~-----~~p~lLlL-DEPt~~LD~~~~~~i~-~~l~~ 446 (538)
T 1yqt_A 376 L-NS-NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLL-----RDADIYLL-DEPSAYLDVEQRLAVS-RAIRH 446 (538)
T ss_dssp H-TC-HHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHT-----SCCSEEEE-ECTTTTCCHHHHHHHH-HHHHH
T ss_pred C-CH-HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCcccCCHHHHHHHH-HHHHH
Confidence 0 11 123344444444432 36778899999999999999999 99999999 9999999999985544 77777
Q ss_pred hhc-CCCCccceEEEeccccccCCcEEEEE
Q 007747 557 LSS-SPNPQLIDGILLTKFDTIDDKHYQWS 585 (591)
Q Consensus 557 l~~-~~~~~~it~IIlTK~D~i~d~vGals 585 (591)
+.. .+.++.+.+|-+.-+..+||++..+.
T Consensus 447 l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 447 LMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp HHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 753 33344444444444566788876543
No 65
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.78 E-value=4.1e-20 Score=208.24 Aligned_cols=174 Identities=18% Similarity=0.127 Sum_probs=117.3
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEE---------EEccccc-----------ceeeeec
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV---------MMAACDT-----------FRSGAVE 460 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V---------~i~~~Dt-----------~Rigave 460 (591)
.+|.+++ .+.+|+ +++|+|||||||||||++|+|++.|+.|++ .+.|.++ .++++++
T Consensus 106 ~~l~~vs-~i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 3788999 899999 999999999999999999999999999985 2233321 1244555
Q ss_pred chhhhhhhc-ccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 461 QLRTHARRL-QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 461 Ql~~~~~~l-~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
|.......+ .-.+.......+....+.++++.+++... +..+..+||||+||+.||++|+ .+|+++|| ||||
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~-----~~P~lLlL-DEPT 256 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL-----RKAHFYFF-DEPS 256 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH-----SCCSEEEE-ECTT
T ss_pred chhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCc
Confidence 532111100 00000000000011234566777666543 6778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
++||+..+.. +.+.|..+...+.++.+..|-+.-++.++|++..+
T Consensus 257 s~LD~~~~~~-l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 257 SYLDIRQRLK-VARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp TTCCHHHHHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ccCCHHHHHH-HHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence 9999998754 44778888654333333334334456677877544
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.8e-19 Score=200.27 Aligned_cols=166 Identities=15% Similarity=0.113 Sum_probs=118.0
Q ss_pred cccccccccccC-----CceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh------hhhcc
Q 007747 402 ILRDVHAAKEQR-----KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH------ARRLQ 470 (591)
Q Consensus 402 iL~~is~~i~~G-----ep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~------~~~l~ 470 (591)
++++++|++.+| + +++|+||||||||||+++|+|++.|+.|+.. ...++++++|.... .+.+.
T Consensus 362 ~l~~vsl~v~~G~~~~GE--iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~----~~~~i~~~~q~~~~~~~~tv~e~~~ 435 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSE--ILVMMGENGTGKTTLIKLLAGALKPDEGQDI----PKLNVSMKPQKIAPKFPGTVRQLFF 435 (608)
T ss_dssp ECSSCEEEECCEECCTTC--EEEEESCTTSSHHHHHHHHHTSSCCSBCCCC----CSCCEEEECSSCCCCCCSBHHHHHH
T ss_pred ccCceEEEEecCccccce--EEEEECCCCCcHHHHHHHHhcCCCCCCCcCc----cCCcEEEecccccccCCccHHHHHH
Confidence 577899999888 6 8999999999999999999999999998731 12457888875321 11111
Q ss_pred cceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 471 VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 471 v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
..+ .....+ ...+.++++.+++..+ +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+...
T Consensus 436 ~~~--~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~-----~~p~lLlL-DEPT~gLD~~~~~~i 506 (608)
T 3j16_B 436 KKI--RGQFLN-PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALG-----IPADIYLI-DEPSAYLDSEQRIIC 506 (608)
T ss_dssp HHC--SSTTTS-HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTT-----SCCSEEEE-CCTTTTCCHHHHHHH
T ss_pred HHh--hccccc-HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCCCCCCHHHHHHH
Confidence 111 111112 2345567777776554 7888899999999999999999 99999999 999999999987544
Q ss_pred HHHHHHHhh-cCCCCccceEEEeccccccCCcEEE
Q 007747 550 FNQKLADLS-SSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 550 f~~~L~~l~-~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
+ +.|..+. ..+.++.+.+|-+.-+..++|++..
T Consensus 507 ~-~ll~~l~~~~g~tviivtHdl~~~~~~aDrviv 540 (608)
T 3j16_B 507 S-KVIRRFILHNKKTAFIVEHDFIMATYLADKVIV 540 (608)
T ss_dssp H-HHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred H-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4 6777764 3333444334444445566777755
No 67
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.75 E-value=1.5e-18 Score=210.68 Aligned_cols=156 Identities=20% Similarity=0.233 Sum_probs=117.1
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----h
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~-----~ 466 (591)
++|++|||++++|+ .++||||+||||||+++.|.+++.|+.|+|.|+|.|+. ++++|+|.+.+ .
T Consensus 1093 ~VL~~isl~I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQ--TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170 (1321)
T ss_dssp CSEEEEEEEECTTC--EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred ccccceeEEECCCC--EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHH
Confidence 58999999999999 99999999999999999999999999999999999982 59999998754 4
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcchh----ccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 467 ~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vli----DtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
+|+...+ .....+. +.+.+|++.+++ .++|..+. .+||||+||++|||||. .+|+++||
T Consensus 1171 eNI~~gl--d~~~~sd-~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll-----r~~~ILiL- 1241 (1321)
T 4f4c_A 1171 ENIIYGL--DPSSVTM-AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV-----RNPKILLL- 1241 (1321)
T ss_dssp HHHSSSS--CTTTSCH-HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH-----SCCSEEEE-
T ss_pred HHHhccC--CCCCCCH-HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH-----hCCCEEEE-
Confidence 4432111 0111222 234555555433 35666664 48999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
||||+++|+... ..+.+.|..+.. +.|.|+++.
T Consensus 1242 DEaTSaLD~~tE-~~Iq~~l~~~~~-----~~TvI~IAH 1274 (1321)
T 4f4c_A 1242 DEATSALDTESE-KVVQEALDRARE-----GRTCIVIAH 1274 (1321)
T ss_dssp ESCCCSTTSHHH-HHHHHHHTTTSS-----SSEEEEECS
T ss_pred eCccccCCHHHH-HHHHHHHHHHcC-----CCEEEEecc
Confidence 999999999875 334455543322 345555543
No 68
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.75 E-value=4.6e-19 Score=201.70 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=103.7
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHH---------------------HHHHhhhhcC-------CcEEEEcc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL---------------------AKVAYWLLQH-------KVSVMMAA 450 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL---------------------~kLAg~l~~~-------~G~V~i~~ 450 (591)
...+|++|||++++|+ +++|+||||||||||+ +.++++..|+ .+.|.+.+
T Consensus 30 ~~~~L~~vsl~i~~Ge--~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGK--LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp CSTTCCSEEEEEETTS--EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred CccceeccEEEECCCC--EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 4568999999999999 9999999999999998 7788888887 45566655
Q ss_pred ccc-----ceeeeecchhhhhhhc-----------------------ccceeecCC-CCCHHH----HH------HHHHH
Q 007747 451 CDT-----FRSGAVEQLRTHARRL-----------------------QVPIFEKGY-EKDPAI----VA------KEAIQ 491 (591)
Q Consensus 451 ~Dt-----~RigaveQl~~~~~~l-----------------------~v~l~~~~~-~~d~~~----~a------~~al~ 491 (591)
.+. .++|+++|...+...+ ++.++.... ...... .+ ...++
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 543 2366666643322110 111110000 000000 00 01233
Q ss_pred HhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCCc--EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccce
Q 007747 492 EATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567 (591)
Q Consensus 492 ~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd--lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it 567 (591)
.+++.. .+..+..+||||+||+.|||+|+ .+|+ ++|| ||||+|||+..+... .+.|..+...+.++.+.
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~-----~~p~~~lLlL-DEPtsgLD~~~~~~l-~~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIG-----SRLTGVLYVL-DEPSIGLHQRDNDRL-IATLKSMRDLGNTLIVV 260 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHH-----TCCCSCEEEE-ECTTTTCCGGGHHHH-HHHHHHHHHTTCEEEEE
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHh-----hCCCCCEEEE-ECCccCCCHHHHHHH-HHHHHHHHHcCCEEEEE
Confidence 333332 36778899999999999999999 9988 8888 999999999987544 47788887654433333
Q ss_pred EEEeccccccCCcEEEE
Q 007747 568 GILLTKFDTIDDKHYQW 584 (591)
Q Consensus 568 ~IIlTK~D~i~d~vGal 584 (591)
.|-+.-+.. ||++..+
T Consensus 261 tHd~~~~~~-~d~ii~l 276 (670)
T 3ux8_A 261 EHDEDTMLA-ADYLIDI 276 (670)
T ss_dssp CCCHHHHHH-CSEEEEE
T ss_pred eCCHHHHhh-CCEEEEe
Confidence 333333333 5655433
No 69
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.4e-19 Score=199.74 Aligned_cols=171 Identities=16% Similarity=0.093 Sum_probs=111.7
Q ss_pred ccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEE-----------Ecccccce---------ee--eec
Q 007747 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTFR---------SG--AVE 460 (591)
Q Consensus 403 L~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~-----------i~~~Dt~R---------ig--ave 460 (591)
|+.++ .+.+|+ +++|+|||||||||||++|+|++.|+.|+|. +.+.+... +. ...
T Consensus 94 l~~l~-~~~~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (608)
T 3j16_B 94 LHRLP-TPRPGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP 170 (608)
T ss_dssp EECCC-CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred ecCCC-CCCCCC--EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhch
Confidence 44444 467899 9999999999999999999999999999873 11111100 00 001
Q ss_pred c----hhhhhhh--cccc-eeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 461 Q----LRTHARR--LQVP-IFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 461 Q----l~~~~~~--l~v~-l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
| ....... ..+. +... ........+.++++.+++... +..+.++||||+|++.||++|+ .+|+++|
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~-----~~p~lll 244 (608)
T 3j16_B 171 QYVDNIPRAIKGPVQKVGELLKL-RMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV-----QEADVYM 244 (608)
T ss_dssp CCTTTHHHHCSSSSSHHHHHHHH-HCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHH-----SCCSEEE
T ss_pred hhhhhhhhhhcchhhHHHHHHhh-hhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHH-----hCCCEEE
Confidence 1 0000000 0000 0000 011112445667777666543 6778899999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
| ||||++||+..+...+ +.|..+...+.++.+..|-+.-++.++|++..+
T Consensus 245 l-DEPts~LD~~~~~~l~-~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 245 F-DEPSSYLDVKQRLNAA-QIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp E-ECTTTTCCHHHHHHHH-HHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred E-ECcccCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9 9999999999875544 778888766544444445455567778887654
No 70
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.74 E-value=3.5e-19 Score=198.06 Aligned_cols=164 Identities=14% Similarity=0.066 Sum_probs=106.1
Q ss_pred ccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEE-----------EEcccccc-----------eeeeecchhhhhhh
Q 007747 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV-----------MMAACDTF-----------RSGAVEQLRTHARR 468 (591)
Q Consensus 411 ~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V-----------~i~~~Dt~-----------RigaveQl~~~~~~ 468 (591)
.+|+ +++||||||||||||+++|+|++.|+.|+| .+.+.+.. .+....|.......
T Consensus 23 ~~Ge--i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 23 KNNT--ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CTTE--EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 4788 999999999999999999999999999987 34443321 01111111100000
Q ss_pred c-ccceeecCCCCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 469 L-QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 469 l-~v~l~~~~~~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+ ...+.......+....+.++++.+++... +..+.++||||+|++.||++|+ .+|+++|| ||||++||+..+
T Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~-----~~p~illl-DEPts~LD~~~~ 174 (538)
T 3ozx_A 101 FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL-----READVYIF-DQPSSYLDVRER 174 (538)
T ss_dssp TCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH-----SCCSEEEE-ESTTTTCCHHHH
T ss_pred hccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCcccCCHHHH
Confidence 0 00000000000001124456666665443 7788899999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
...+ +.|..+.. +.++.+..|-+.-++.+||++..+
T Consensus 175 ~~l~-~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl 210 (538)
T 3ozx_A 175 MNMA-KAIRELLK-NKYVIVVDHDLIVLDYLTDLIHII 210 (538)
T ss_dssp HHHH-HHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHH-HHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEe
Confidence 5544 77777754 444444444444566778876553
No 71
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.73 E-value=4e-18 Score=206.58 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=118.2
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----h
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~-----~ 466 (591)
.+|+++||++++|+ +++|+|||||||||+++.|+|++.|+.|+|.+.|.|+. ++|+|+|.+.+ .
T Consensus 1047 ~~l~~vsl~i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 1124 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQ--TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124 (1284)
T ss_dssp CSBSSCCEEECSSS--EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHH
T ss_pred eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHH
Confidence 58999999999999 99999999999999999999999999999999998872 49999998743 3
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEEEE
Q 007747 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (591)
Q Consensus 467 ~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlILLV 534 (591)
+++... ......... .+.++++.+.. .++|..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 1125 eNi~~~--~~~~~~~~~-~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~-----~~p~iLiL- 1195 (1284)
T 3g5u_A 1125 ENIAYG--DNSRVVSYE-EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV-----RQPHILLL- 1195 (1284)
T ss_dssp HHHTCC--CSSCCCCHH-HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH-----HCCSSEEE-
T ss_pred HHHhcc--CCCCCCCHH-HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 333221 111111222 22333333321 1233322 468999999999999999 99999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEE
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQ 583 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGa 583 (591)
||||+|+|+.... .+.+.|..+.. ++++.+-.|-+.-+.. ||++..
T Consensus 1196 DEpTs~lD~~~~~-~i~~~l~~~~~-~~tvi~isH~l~~i~~-~dri~v 1241 (1284)
T 3g5u_A 1196 DEATSALDTESEK-VVQEALDKARE-GRTCIVIAHRLSTIQN-ADLIVV 1241 (1284)
T ss_dssp ESCSSSCCHHHHH-HHHHHHHHHSS-SSCEEEECSCTTGGGS-CSEEEE
T ss_pred eCCcccCCHHHHH-HHHHHHHHhCC-CCEEEEEecCHHHHHc-CCEEEE
Confidence 9999999999864 45567766532 3333333333333433 565543
No 72
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.73 E-value=1.9e-18 Score=202.31 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=54.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchh
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR 463 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~ 463 (591)
..+|+++||++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+. .|+||++|..
T Consensus 686 ~~iL~dVSl~I~~Ge--ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--~~I~yv~Q~~ 745 (986)
T 2iw3_A 686 KPQITDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQHA 745 (986)
T ss_dssp SCSEEEEEEEEETTC--EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--CCEEEECHHH
T ss_pred ceeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--cceEeeccch
Confidence 457999999999999 99999999999999999999999999999998753 3788888854
No 73
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=3.9e-18 Score=207.13 Aligned_cols=155 Identities=22% Similarity=0.266 Sum_probs=118.8
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh----
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH---- 465 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~---- 465 (591)
...+|+|+||++++|+ .++||||+||||||+++.|.|++.|+.|+|.++|.|+. ++|+|+|.+.+
T Consensus 430 ~~~vL~~isl~i~~G~--~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~T 507 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQ--TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCT 507 (1321)
T ss_dssp TSCSEEEEEEEECTTC--EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEE
T ss_pred CCceeeceEEeecCCc--EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCc
Confidence 3568999999999999 99999999999999999999999999999999999873 49999997743
Q ss_pred -hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCCcch----hccchhHHHHHHHHHHHHhchhcCCCcEEE
Q 007747 466 -ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (591)
Q Consensus 466 -~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d~vl----iDtSGg~~qr~~LaraL~kl~~~~~PdlIL 532 (591)
.+|+ .+. .. ..+. +.+.+|++.+.. .+++..+ ..+||||+||++|||||. .+|+++|
T Consensus 508 I~eNI--~~g-~~-~~~~-~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~-----~~~~Ili 577 (1321)
T 4f4c_A 508 IEENI--SLG-KE-GITR-EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV-----RNPKILL 577 (1321)
T ss_dssp HHHHH--HTT-CT-TCCH-HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT-----TCCSEEE
T ss_pred hhHHH--hhh-cc-cchH-HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc-----cCCCEEE
Confidence 4433 221 11 1122 334455544332 3455555 458999999999999999 9999999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 533 LVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
| ||||+++|+... ..+.+.|..+.. +.|.|++|
T Consensus 578 L-DE~tSaLD~~te-~~i~~~l~~~~~-----~~T~iiia 610 (1321)
T 4f4c_A 578 L-DEATSALDAESE-GIVQQALDKAAK-----GRTTIIIA 610 (1321)
T ss_dssp E-ESTTTTSCTTTH-HHHHHHHHHHHT-----TSEEEEEC
T ss_pred E-ecccccCCHHHH-HHHHHHHHHHhC-----CCEEEEEc
Confidence 9 999999999874 566677877654 34445554
No 74
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.73 E-value=3.3e-18 Score=207.22 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=113.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhh-----
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~----- 465 (591)
..+|++|||++++|+ +++|||||||||||+++.|+|++.|+.|+|.+.|.|+. ++|+|+|...+
T Consensus 403 ~~vL~~isl~i~~G~--~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti 480 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQ--TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTI 480 (1284)
T ss_dssp CCSEEEEEEEECTTC--EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCH
T ss_pred CcceecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccH
Confidence 468999999999999 99999999999999999999999999999999998873 49999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhh--------cCCC----cchhccchhHHHHHHHHHHHHhchhcCCCcEEEE
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~--------~~~d----~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILL 533 (591)
.+++... .. ..... .+.++++.+.. .+++ .....+||||+||++|||+|. .+|+++||
T Consensus 481 ~eNi~~g--~~--~~~~~-~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~-----~~p~iliL 550 (1284)
T 3g5u_A 481 AENIRYG--RE--DVTMD-EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV-----RNPKILLL 550 (1284)
T ss_dssp HHHHHHH--CS--SCCHH-HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhcC--CC--CCCHH-HHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 3333221 11 11222 22333332211 1222 233578999999999999999 99999999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 534 VDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
||||++||+... ..+.+.+..+.. +.+.|++|
T Consensus 551 -DEpts~LD~~~~-~~i~~~l~~~~~-----~~t~i~it 582 (1284)
T 3g5u_A 551 -DEATSALDTESE-AVVQAALDKARE-----GRTTIVIA 582 (1284)
T ss_dssp -ESTTCSSCHHHH-HHHHHHHHHHHT-----TSEEEEEC
T ss_pred -ECCCCCCCHHHH-HHHHHHHHHHcC-----CCEEEEEe
Confidence 999999999875 455566666543 34445554
No 75
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.69 E-value=3e-17 Score=192.32 Aligned_cols=160 Identities=18% Similarity=0.112 Sum_probs=108.4
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc---cceeeeecchh-h------hhhh
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD---TFRSGAVEQLR-T------HARR 468 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D---t~RigaveQl~-~------~~~~ 468 (591)
...+|+++||++.+|+ +++|+|||||||||||++|+| |+| .+.+ ..++++++|.. . ..++
T Consensus 447 ~~~iL~~vsl~I~~Ge--~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~ 516 (986)
T 2iw3_A 447 AKILLNKTQLRLKRAR--RYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDIDGTHSDTSVLDF 516 (986)
T ss_dssp TEEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCCCCCCTTSBHHHH
T ss_pred CEEeEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccccccccCCcHHHH
Confidence 4568999999999999 999999999999999999995 222 1221 13567777642 1 1122
Q ss_pred cccceeecCCCCCHHHHHHHHHHHhhhc-C-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 469 LQVPIFEKGYEKDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 469 l~v~l~~~~~~~d~~~~a~~al~~~~~~-~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+.. ..++. ...+.++++.+++. . .+..+.++||||+||+.|+++|+ .+|+++|| ||||+|||+..+
T Consensus 517 l~~----~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~-----~~P~lLLL-DEPTs~LD~~~~ 584 (986)
T 2iw3_A 517 VFE----SGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVL-----RNADILLL-DEPTNHLDTVNV 584 (986)
T ss_dssp HHT----TCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHH-----TTCSEEEE-ESTTTTCCHHHH
T ss_pred HHH----hhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCccCCCHHHH
Confidence 111 11111 34456666666552 1 25678899999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEeccccccCCcEEEE
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~d~vGal 584 (591)
.. +.+.|.. .+.++.+.+|-+.-++.++|++..|
T Consensus 585 ~~-l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L 618 (986)
T 2iw3_A 585 AW-LVNYLNT---CGITSITISHDSVFLDNVCEYIINY 618 (986)
T ss_dssp HH-HHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEE
T ss_pred HH-HHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEE
Confidence 53 3355544 2233333333333456667776543
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.67 E-value=6.4e-19 Score=189.93 Aligned_cols=151 Identities=11% Similarity=0.081 Sum_probs=105.8
Q ss_pred ccccccccccccCC------------------ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecch
Q 007747 401 DILRDVHAAKEQRK------------------PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL 462 (591)
Q Consensus 401 ~iL~~is~~i~~Ge------------------p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl 462 (591)
.+|++|++.+++|+ +.+++|+|||||||||||++|+|++.|+.|+|.+.+.++.|.++++|.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 45666777776665 348999999999999999999999999999999998887666888886
Q ss_pred hhhhhhcccceee-cCCCCCHHHHHHHHHHHhhhcCCCcchhccchh--HHHHHHHHHHHHh-----chhcCCCcEEEEE
Q 007747 463 RTHARRLQVPIFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR--MQDNEPLMRALSK-----LIYLNNPDLVLFV 534 (591)
Q Consensus 463 ~~~~~~l~v~l~~-~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg--~~qr~~LaraL~k-----l~~~~~PdlILLV 534 (591)
.. ...+. +.. .+++.. ...+.++++.+.+.+++.++. +||| |+|++.++++|.. ++-.++|+++++
T Consensus 117 ~~-~~~lt--v~D~~g~~~~-~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllL- 190 (413)
T 1tq4_A 117 PN-IPNVV--FWDLPGIGST-NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDIT- 190 (413)
T ss_dssp SS-CTTEE--EEECCCGGGS-SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHH-
T ss_pred cc-cCCee--ehHhhcccch-HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccccc-
Confidence 32 22221 111 111111 123456677776666666666 9999 9999999999994 122348999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHhh
Q 007747 535 GEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 535 DEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
||||+|+|+..+.. +.+.+..+.
T Consensus 191 DEPtsgLD~~~~~~-l~~~l~~l~ 213 (413)
T 1tq4_A 191 NEADGEPQTFDKEK-VLQDIRLNC 213 (413)
T ss_dssp HHHTTCCTTCCHHH-HHHHHHHHH
T ss_pred CcccccCCHHHHHH-HHHHHHHHH
Confidence 99999999988754 446666663
No 77
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.63 E-value=5.8e-16 Score=176.18 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=56.6
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCC---cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
+..+..+||||+||+.|||+|+ .+| +++|| ||||+|||+..+... .+.|..+...+.++.+..|-+.-+.
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~-----~~p~~p~llll-DEPt~~LD~~~~~~i-~~~l~~l~~~g~tvi~vtHd~~~~~ 610 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELH-----RRSNGRTLYIL-DEPTTGLHVDDIARL-LDVLHRLVDNGDTVLVIEHNLDVIK 610 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHH-----SCCCSCEEEEE-ESTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred cCCchhCCHHHHHHHHHHHHHh-----hCCCCCcEEEE-eCCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5678899999999999999999 776 47777 999999999997554 4778888765444444444443343
Q ss_pred ccCCcEEEE
Q 007747 576 TIDDKHYQW 584 (591)
Q Consensus 576 ~i~d~vGal 584 (591)
.||++..+
T Consensus 611 -~~d~i~~l 618 (670)
T 3ux8_A 611 -TADYIIDL 618 (670)
T ss_dssp -TCSEEEEE
T ss_pred -hCCEEEEe
Confidence 36665444
No 78
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.5e-17 Score=178.77 Aligned_cols=129 Identities=11% Similarity=0.027 Sum_probs=91.2
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc-E-EEEccccc-ceeeeecchhhh---hhhc----cccee
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-S-VMMAACDT-FRSGAVEQLRTH---ARRL----QVPIF 474 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G-~-V~i~~~Dt-~RigaveQl~~~---~~~l----~v~l~ 474 (591)
+++|.+.+|+ +++|+||||||||||+++|+|++.|++| + |.+.+ |. .++++++|.... ...+ ++ +.
T Consensus 130 ~vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 130 KIRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp HHHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred cCceEeCCCC--EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeeeeccchhhcccccccchhhhh-cc
Confidence 5788888999 9999999999999999999999999999 9 98887 44 348889886521 1111 11 11
Q ss_pred ecC-CCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHH--HHhchhcCCCcE----EEEEec-ccCCCCHH
Q 007747 475 EKG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRA--LSKLIYLNNPDL----VLFVGE-ALVGNDAV 544 (591)
Q Consensus 475 ~~~-~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~Lara--L~kl~~~~~Pdl----ILLVDE-Pt~GlD~~ 544 (591)
... .+......+..+++.+++..+.. ..++||||+||+.++++ |+ .+|++ +|| || ||++||+.
T Consensus 206 ~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~-----~~p~i~~sGLlL-DEpPts~LD~~ 276 (460)
T 2npi_A 206 QSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLH-----LDPQVRRSGCIV-DTPSISQLDEN 276 (460)
T ss_dssp CBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHH-----HCHHHHHSCEEE-ECCCGGGSCSS
T ss_pred cccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhc-----cCcccCcceEEE-eCCcccccChh
Confidence 110 11111111122222222222212 66899999999999999 99 89999 999 99 99999997
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.57 E-value=2.7e-16 Score=148.81 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=69.7
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHH
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI 484 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~ 484 (591)
+|+|++++|+ +++|+|||||||||+++++.+ |... ...|..| |+++|...... +.. ....
T Consensus 1 ~vsl~i~~ge--i~~l~G~nGsGKSTl~~~~~~------~~~~-~~~d~~~-g~~~~~~~~~~-----~~~-----~~~~ 60 (171)
T 4gp7_A 1 SMKLTIPELS--LVVLIGSSGSGKSTFAKKHFK------PTEV-ISSDFCR-GLMSDDENDQT-----VTG-----AAFD 60 (171)
T ss_dssp CEEEEEESSE--EEEEECCTTSCHHHHHHHHSC------GGGE-EEHHHHH-HHHCSSTTCGG-----GHH-----HHHH
T ss_pred CccccCCCCE--EEEEECCCCCCHHHHHHHHcc------CCeE-EccHHHH-HHhcCcccchh-----hHH-----HHHH
Confidence 5789999999 999999999999999997432 1111 2223222 33433221000 000 0000
Q ss_pred HHHHHHHHhhhcCCCcc---hhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHH
Q 007747 485 VAKEAIQEATRNGSDVV---LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (591)
Q Consensus 485 ~a~~al~~~~~~~~d~v---liDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 545 (591)
............++..+ ....+||++|++.||++|. .+|++++| ||||+++|+..
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~-----~~p~~lll-DEPt~~Ld~~~ 118 (171)
T 4gp7_A 61 VLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYH-----CFPVAVVF-NLPEKVCQERN 118 (171)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTT-----CEEEEEEE-CCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcC-----CcEEEEEE-eCCHHHHHHHH
Confidence 01111111111222211 2235999999999999999 99999999 99999999984
No 80
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.56 E-value=7.7e-17 Score=158.37 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=77.1
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc--ccc---c-ceeeeecchhhhhhhc-cc--c
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--ACD---T-FRSGAVEQLRTHARRL-QV--P 472 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~--~~D---t-~RigaveQl~~~~~~l-~v--~ 472 (591)
+|++| .+|+ +++|+||||||||||+++|+|+ .|+.|+|... ..+ . .++|+++|.. .+++ .. +
T Consensus 15 ~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~~~ 85 (208)
T 3b85_A 15 YVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYLRP 85 (208)
T ss_dssp HHHHH----HHCS--EEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHH
T ss_pred HHHhc----cCCC--EEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHHHH
Confidence 45554 4789 9999999999999999999999 9999988531 111 1 2488999864 2222 11 0
Q ss_pred eeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHH
Q 007747 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552 (591)
Q Consensus 473 l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~ 552 (591)
++...........+.++++. +. ||+||+.|||+|+ .+|+++|| ||||+| .+ ..+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~----gl---------Gq~qrv~lAraL~-----~~p~lllL-DEPts~----~~-~~l~~ 141 (208)
T 3b85_A 86 LHDALRDMVEPEVIPKLMEA----GI---------VEVAPLAYMRGRT-----LNDAFVIL-DEAQNT----TP-AQMKM 141 (208)
T ss_dssp HHHHHTTTSCTTHHHHHHHT----TS---------EEEEEGGGGTTCC-----BCSEEEEE-CSGGGC----CH-HHHHH
T ss_pred HHHHHHHhccHHHHHHHHHh----CC---------chHHHHHHHHHHh-----cCCCEEEE-eCCccc----cH-HHHHH
Confidence 01000000001122222221 11 9999999999999 99999999 999999 22 23335
Q ss_pred HHHHh
Q 007747 553 KLADL 557 (591)
Q Consensus 553 ~L~~l 557 (591)
.|..+
T Consensus 142 ~l~~l 146 (208)
T 3b85_A 142 FLTRL 146 (208)
T ss_dssp HHTTB
T ss_pred HHHHh
Confidence 56555
No 81
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.53 E-value=6.7e-15 Score=170.69 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=65.6
Q ss_pred HHHHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCC---CcEEEEEecccCCCCHHHHHHHHHHHHHHhhcC
Q 007747 486 AKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNN---PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (591)
Q Consensus 486 a~~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~---PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~ 560 (591)
+.++++.+.+.. .+..+..+|||++||+.||++|+ .+ |+++|| ||||+|||+.++.. +.+.|..+...
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~-----~~p~~p~lLIL-DEPTsGLD~~~~~~-l~~lL~~L~~~ 782 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELR-----RSGRGGTVYVL-DEPTTGLHPADVER-LQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTS-----SCCSSCEEEEE-ECTTTTCCHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHH-----hCCCCCCEEEE-ECCCCCCCHHHHHH-HHHHHHHHHhC
Confidence 344555555443 25678899999999999999999 75 688888 99999999999754 55788888776
Q ss_pred CCCccceEEEeccccccCCcEEEE
Q 007747 561 PNPQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 561 ~~~~~it~IIlTK~D~i~d~vGal 584 (591)
+.++.+..|-+.-+ .++|++..|
T Consensus 783 G~tVIvisHdl~~i-~~aDrii~L 805 (842)
T 2vf7_A 783 GNTVIAVEHKMQVV-AASDWVLDI 805 (842)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEE
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEE
Confidence 55555555555555 456766544
No 82
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.53 E-value=9.9e-16 Score=156.13 Aligned_cols=141 Identities=16% Similarity=0.081 Sum_probs=82.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc------ceeeeecchhhhhhhccc----ceeecCCCCCHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLRTHARRLQV----PIFEKGYEKDPAIVA 486 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt------~RigaveQl~~~~~~l~v----~l~~~~~~~d~~~~a 486 (591)
.++||||||||||||++.|+|++.|+.|+|.+.|.++ .++|+++|...+...+.+ .+............+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 7999999999999999999999999999999988765 248999997654333322 111111111111122
Q ss_pred HHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccc
Q 007747 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 566 (591)
Q Consensus 487 ~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~i 566 (591)
.+.+. ..-.+...-.+|||++|++.++|+++ . ++|+|||+.|+|+.+. +.++.+... .-
T Consensus 84 ~~~~~---~~~~~~~~~~LS~G~~qrv~iaRal~-----~----lllldep~~gL~~lD~-----~~l~~L~~~----~~ 142 (270)
T 3sop_A 84 EKYIN---EQYEKFLKEEVNIARKKRIPDTRVHC-----C----LYFISPTGHSLRPLDL-----EFMKHLSKV----VN 142 (270)
T ss_dssp HHHHH---HHHHHHHHHHSCTTCCSSCCCCSCCE-----E----EEEECCCSSSCCHHHH-----HHHHHHHTT----SE
T ss_pred HHHHH---HHHHhhhHHhcCcccchhhhhheeee-----e----eEEEecCCCcCCHHHH-----HHHHHHHhc----Cc
Confidence 22221 11113456689999999999999876 2 4445999999999884 445556543 33
Q ss_pred eEEEeccccccC
Q 007747 567 DGILLTKFDTID 578 (591)
Q Consensus 567 t~IIlTK~D~i~ 578 (591)
-.+|++|.|.+.
T Consensus 143 vI~Vi~K~D~lt 154 (270)
T 3sop_A 143 IIPVIAKADTMT 154 (270)
T ss_dssp EEEEETTGGGSC
T ss_pred EEEEEeccccCC
Confidence 458899999863
No 83
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.51 E-value=2.5e-14 Score=136.97 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=71.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---------ceeeeecchhhhhhhcccceeecCCCCCHHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---------~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~ 487 (591)
.++|+||||||||||+++|+|++. |.+.|.++ .++|+++|..+..+++ +...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~----~~~~~~~~------ 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI----FSSKFFTS------ 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE----EEETTCCC------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH----HHhhcCCc------
Confidence 689999999999999999999985 22222211 3578887754221111 11110000
Q ss_pred HHHHHhhhcCCCcchhccchhHHHHHHHHHH-----HHhchhcCCCcEEEEEec--ccCCCCHHHH
Q 007747 488 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRA-----LSKLIYLNNPDLVLFVGE--ALVGNDAVDQ 546 (591)
Q Consensus 488 ~al~~~~~~~~d~vliDtSGg~~qr~~Lara-----L~kl~~~~~PdlILLVDE--Pt~GlD~~~q 546 (591)
....+..+.++||||+|++.++++ |. .+|+++|| || ||+++|+..+
T Consensus 67 -------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~-----~~p~llil-DEigp~~~ld~~~~ 119 (178)
T 1ye8_A 67 -------KKLVGSYGVNVQYFEELAIPILERAYREAKK-----DRRKVIII-DEIGKMELFSKKFR 119 (178)
T ss_dssp -------SSEETTEEECHHHHHHHHHHHHHHHHHHHHH-----CTTCEEEE-CCCSTTGGGCHHHH
T ss_pred -------cccccccccCcCHHHHHHHHHHhhccccccc-----cCCCEEEE-eCCCCcccCCHHHH
Confidence 011245677899999999999996 88 89999999 99 9999998775
No 84
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.50 E-value=9.9e-15 Score=155.64 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHHHHHhchhcCCC--cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 505 TAGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 505 tSGg~~qr~~LaraL~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
+|||++|++.||++|. .+| +++|| ||||+|||+..+.. +.+.|..+. . +.+.|++|.
T Consensus 296 lSgGe~qrl~lA~~l~-----~~~~~~~LlL-DEpt~~LD~~~~~~-l~~~L~~l~-~----~~~vi~itH 354 (415)
T 4aby_A 296 ASGGELSRVMLAVSTV-----LGADTPSVVF-DEVDAGIGGAAAIA-VAEQLSRLA-D----TRQVLVVTH 354 (415)
T ss_dssp SCHHHHHHHHHHHHHH-----HCCSSSEEEE-SSTTTTCCHHHHHH-HHHHHHHHT-T----TSEEEEECS
T ss_pred cCHhHHHHHHHHHHHH-----hCCCCCEEEE-ECCCCCCCHHHHHH-HHHHHHHHh-C----CCEEEEEeC
Confidence 5999999999999999 888 99999 99999999998754 447777776 2 344455544
No 85
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.49 E-value=3.3e-14 Score=165.85 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=62.5
Q ss_pred HHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCC---cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007747 488 EAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (591)
Q Consensus 488 ~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (591)
++++.+++.. .+..+..+|||++||+.||++|+ .+| +++|| ||||+|||+.++.. +.+.|..+...+.
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~-----~~p~~p~lLIL-DEPTsGLD~~~~~~-l~~lL~~L~~~G~ 899 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELH-----RRSNGRTLYIL-DEPTTGLHVDDIAR-LLDVLHRLVDNGD 899 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHS-----SCCCSCEEEEE-ECTTTTCCHHHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHh-----cCCCCCCEEEE-ECCCCCCCHHHHHH-HHHHHHHHHhCCC
Confidence 4455555443 35678899999999999999999 765 78888 99999999998754 4577888876654
Q ss_pred CccceEEEeccccccCCcEEEE
Q 007747 563 PQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 563 ~~~it~IIlTK~D~i~d~vGal 584 (591)
++.+..|-+.-+. .+|++..+
T Consensus 900 TVIvisHdl~~i~-~aDrIivL 920 (972)
T 2r6f_A 900 TVLVIEHNLDVIK-TADYIIDL 920 (972)
T ss_dssp EEEEECCCHHHHT-TCSEEEEE
T ss_pred EEEEEcCCHHHHH-hCCEEEEE
Confidence 4444444444343 46665444
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.45 E-value=1.2e-13 Score=161.39 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=54.9
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCC---cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
+.....+||||+||+.||++|+ .+| .++|| ||||+|||+.++.. +.+.|..+...+.++.+..|-+.-+.
T Consensus 800 gq~~~~LSGGErQRV~LAraL~-----~~p~~p~LLIL-DEPTsGLD~~~~~~-L~~lL~~L~~~G~TVIvI~HdL~~i~ 872 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELR-----KRDTGRTLYIL-DEPTVGLHFEDVRK-LVEVLHRLVDRGNTVIVIEHNLDVIK 872 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHT-----SCCCSSEEEEE-ESTTTTCCHHHHHH-HHHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred cCCccCCCHHHHHHHHHHHHHh-----hCCCCCCEEEE-ECCCCCCCHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4567789999999999999998 655 67777 99999999999754 45788888765444433333333333
Q ss_pred ccCCcEEEE
Q 007747 576 TIDDKHYQW 584 (591)
Q Consensus 576 ~i~d~vGal 584 (591)
. +|++..|
T Consensus 873 ~-ADrIivL 880 (916)
T 3pih_A 873 N-ADHIIDL 880 (916)
T ss_dssp T-CSEEEEE
T ss_pred h-CCEEEEe
Confidence 3 5555433
No 87
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.45 E-value=8.8e-14 Score=162.73 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=62.2
Q ss_pred HHHHHhhhcC--CCcchhccchhHHHHHHHHHHHHhchhcCCC---cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007747 488 EAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (591)
Q Consensus 488 ~al~~~~~~~--~d~vliDtSGg~~qr~~LaraL~kl~~~~~P---dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (591)
++++.+++.. .+..+..+|||++||+.||++|+ .+| +++|| ||||+|||+.++.. +.+.|..+...+.
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~-----~~p~~p~lLIL-DEPTsGLD~~~~~~-l~~lL~~L~~~G~ 917 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQ-----KRSTGRTVYIL-DEPTTGLHFDDIRK-LLNVINGLVDKGN 917 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHS-----SCCCSSEEEEE-ESTTTTCCHHHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHH-----hCCCCCCEEEE-ECCCCCCCHHHHHH-HHHHHHHHHhCCC
Confidence 4455555432 35678899999999999999999 765 78888 99999999998744 4477888776544
Q ss_pred CccceEEEeccccccCCcEEEE
Q 007747 563 PQLIDGILLTKFDTIDDKHYQW 584 (591)
Q Consensus 563 ~~~it~IIlTK~D~i~d~vGal 584 (591)
++.+..|-+.-+. .+|++..|
T Consensus 918 TVIvisHdl~~i~-~aDrIivL 938 (993)
T 2ygr_A 918 TVIVIEHNLDVIK-TSDWIIDL 938 (993)
T ss_dssp EEEEECCCHHHHT-TCSEEEEE
T ss_pred EEEEEcCCHHHHH-hCCEEEEE
Confidence 4444444443343 46665544
No 88
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.39 E-value=2.2e-15 Score=148.20 Aligned_cols=128 Identities=12% Similarity=0.002 Sum_probs=78.6
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----------ceeeeecchhhhhhhc--
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARRL-- 469 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----------~RigaveQl~~~~~~l-- 469 (591)
-|++|+|++++|+ +++|+||||||||||+++|+|++ | |.|.+ +.+. .++++++|.......+
T Consensus 12 ~l~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 12 SGLVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ----------CCC--CEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 4789999999999 99999999999999999999988 5 88888 6543 2478888876544332
Q ss_pred ---ccc---eeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHH-----HHHHHhchhcCCCcEEEEEeccc
Q 007747 470 ---QVP---IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPL-----MRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 470 ---~v~---l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~L-----araL~kl~~~~~PdlILLVDEPt 538 (591)
.+. +....|+... ..+.++++.... -..-.++|||++||..+ +++|. ..|++++| |||+
T Consensus 86 ~~~~l~~~~~~~~~~g~~~-~~i~~~l~~~~~---~il~~~lsggq~qR~~i~~~~~~~~ll-----~~~~~~~L-de~~ 155 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLK-SEYDKAKEQNKI---CLFEMNINGVKQLKKSTHIKNALYIFI-----KPPSTDVL-LSRL 155 (218)
T ss_dssp TTCEEEEEEETTEEEEEEH-HHHHHHHHTTCE---EEEEECHHHHHHHTTCSSCCSCEEEEE-----ECSCHHHH-HHHH
T ss_pred ccchhhhhhcccccCCCcH-HHHHHHHhCCCc---EEEEecHHHHHHHHHHhcCCCcEEEEE-----eCcCHHHH-HHHH
Confidence 111 1111222222 223444432111 12226789999999888 55555 67888887 9999
Q ss_pred CCCCHHH
Q 007747 539 VGNDAVD 545 (591)
Q Consensus 539 ~GlD~~~ 545 (591)
+++|...
T Consensus 156 ~~~d~~~ 162 (218)
T 1z6g_A 156 LTRNTEN 162 (218)
T ss_dssp HHTCCCC
T ss_pred HhcCCCC
Confidence 9998643
No 89
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.38 E-value=4.4e-13 Score=127.72 Aligned_cols=113 Identities=12% Similarity=0.176 Sum_probs=93.6
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccCCCceeecCCCCceeeeeEeecccceEEEEEeccccc
Q 007747 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (591)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~v~leer~~~~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l~ 80 (591)
|++.+++|++||+|||+++.. ...+.++++.+|+.+.. +.+..+|++| +|+++|..+| ||+|++|+++.+.
T Consensus 44 M~ilYa~VaRG~~VLae~t~~-~gnf~~iak~ll~kl~~--~~~r~s~~~~----~y~fHyl~~n--gl~yl~I~D~~yp 114 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWC-GGNFLEVTEQILAKIPS--ENNKLTYSHG----NYLFHYICQD--RIVYLCITDDDFE 114 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESS-CBSHHHHHHHHHTTSCS--SCEEEEEEET----TEEEEEEEET--TEEEEEEEETTSC
T ss_pred CceEEEEEEcCCEEEEEeccC-CCCHHHHHHHHHhhCCC--CCCceEEEEC----CEEEEEEEEC--CEEEEEEEccccc
Confidence 999999999999999995432 24566777777777765 4455689999 9999999987 8999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhcCCcC---CCccchHHHHHHHHHHHHHH
Q 007747 81 LLYVDDLLAMMKQSFSEIYDPKR---TDYSDFDEMFRQLRKEAEAR 123 (591)
Q Consensus 81 l~yvd~ll~~v~~~f~~~y~~~~---~~~~~f~~~f~~~l~~~e~~ 123 (591)
..+...||++|+.+|...|++.. ..| .|++.|+..|++.+..
T Consensus 115 ~r~AF~fLedI~~eF~~~y~~~~~~a~py-sf~~eF~~~Lk~~~~~ 159 (169)
T 2vx8_A 115 RSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQLKH 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGTCCTT-TTHHHHHHHHSCC---
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCCc-chhHHHHHHHHHHHHH
Confidence 99999999999999999998643 256 7999999999876654
No 90
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.37 E-value=4.1e-13 Score=142.30 Aligned_cols=81 Identities=11% Similarity=-0.029 Sum_probs=55.2
Q ss_pred cchhccchhHHHHHHHHHHHHhc-hhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccC
Q 007747 500 VVLVDTAGRMQDNEPLMRALSKL-IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (591)
Q Consensus 500 ~vliDtSGg~~qr~~LaraL~kl-~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~ 578 (591)
..+.++||||+|++.|+++|+.. .-..+|+++|| ||||+|||+..+...+ +.|..+...+.++.+..|.+.-. ..+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lll-DEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~itH~~~~~-~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFI-DEGFSSLDTENKEKIA-SVLKELERLNKVIVFITHDREFS-EAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEE-ESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEEESCHHHH-TTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEE-eCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEecchHHH-HhC
Confidence 45668999999999999998721 11258999999 9999999999975444 77777765544444444444332 235
Q ss_pred CcEEE
Q 007747 579 DKHYQ 583 (591)
Q Consensus 579 d~vGa 583 (591)
|++..
T Consensus 352 d~~~~ 356 (365)
T 3qf7_A 352 DRKLR 356 (365)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 55533
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.36 E-value=6.1e-14 Score=145.86 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=80.4
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhh-----hhhcccceee-cCC-CCCH
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE-KGY-EKDP 482 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~-----~~~l~v~l~~-~~~-~~d~ 482 (591)
+.+|+ +++|+||||||||||+++|+|++.|..|. .++++++|...+ .+++. ++. .+. ....
T Consensus 87 ~~~g~--ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------~~v~~v~qd~~~~~~t~~e~~~--~~~~~g~~~~~d 154 (312)
T 3aez_A 87 RPVPF--IIGVAGSVAVGKSTTARVLQALLARWDHH--------PRVDLVTTDGFLYPNAELQRRN--LMHRKGFPESYN 154 (312)
T ss_dssp SCCCE--EEEEECCTTSCHHHHHHHHHHHHHTSTTC--------CCEEEEEGGGGBCCHHHHHHTT--CTTCTTSGGGBC
T ss_pred CCCCE--EEEEECCCCchHHHHHHHHHhhccccCCC--------CeEEEEecCccCCcccHHHHHH--HHHhcCCChHHH
Confidence 45676 99999999999999999999999987652 234555554322 22222 111 111 1111
Q ss_pred HHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC
Q 007747 483 AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (591)
Q Consensus 483 ~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD 542 (591)
...+.+.++.+. .+. +..+-.+|||++|++.+++++. .+|+++|| |||+..+|
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~-----~~p~ilIl-Dep~~~~d 208 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVV-----RHPDILIL-EGLNVLQT 208 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEE-----CSCSEEEE-ECTTTTCC
T ss_pred HHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhc-----cCCCEEEE-CCccccCC
Confidence 234556666666 444 4677789999999999999888 89999999 99999985
No 92
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.35 E-value=5.7e-13 Score=139.46 Aligned_cols=92 Identities=17% Similarity=0.314 Sum_probs=73.5
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCC
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 481 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d 481 (591)
+++++++.+.+|+ +++|+||||||||||++.|+|++.|+.|.|.+.+.+.+.. . .+.+ .+.++.
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~---~---~~~~--~i~~~~------ 223 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF---K---HHKN--YTQLFF------ 223 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC---S---SCSS--EEEEEC------
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc---c---cchh--EEEEEe------
Confidence 5667888888999 9999999999999999999999999999999987653221 1 0111 111110
Q ss_pred HHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC
Q 007747 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (591)
Q Consensus 482 ~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~ 539 (591)
. ||++|+..|+++|. .+|+++|+ |||++
T Consensus 224 ----------------------g--gg~~~r~~la~aL~-----~~p~ilil-dE~~~ 251 (330)
T 2pt7_A 224 ----------------------G--GNITSADCLKSCLR-----MRPDRIIL-GELRS 251 (330)
T ss_dssp ----------------------B--TTBCHHHHHHHHTT-----SCCSEEEE-CCCCS
T ss_pred ----------------------C--CChhHHHHHHHHhh-----hCCCEEEE-cCCCh
Confidence 0 89999999999999 99999999 99998
No 93
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.26 E-value=1.1e-11 Score=128.82 Aligned_cols=75 Identities=16% Similarity=0.066 Sum_probs=52.3
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc---c
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF---D 575 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~---D 575 (591)
+..+..+|||++|++.|+++|+.+ ...+|+++|| ||||++||+..+.. +.+.|..+.. +.+.|++|.- -
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~-~~~~~~~lll-DEp~~~LD~~~~~~-l~~~l~~~~~-----~~~vi~~tH~~~~~ 285 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALM-EIKPSPFYVL-DEVDSPLDDYNAER-FKRLLKENSK-----HTQFIVITHNKIVM 285 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHT-TTSCCSEEEE-ESCCSSCCHHHHHH-HHHHHHHHTT-----TSEEEEECCCTTGG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHh-ccCCCCEEEE-eCCCCCCCHHHHHH-HHHHHHHhcC-----CCeEEEEECCHHHH
Confidence 345678999999999999999721 1146788888 99999999998754 4467766632 3344555542 2
Q ss_pred ccCCcE
Q 007747 576 TIDDKH 581 (591)
Q Consensus 576 ~i~d~v 581 (591)
.++|++
T Consensus 286 ~~~d~~ 291 (322)
T 1e69_A 286 EAADLL 291 (322)
T ss_dssp GGCSEE
T ss_pred hhCceE
Confidence 356664
No 94
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.21 E-value=1.5e-12 Score=135.11 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=78.9
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchh-----hhhh-hcccce
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-----THAR-RLQVPI 473 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~-----~~~~-~l~v~l 473 (591)
..+|+++++.+++|+ +++|+||||||||||++.|+|++ .|+|... ++|.. +..+ ++. +
T Consensus 113 ~~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~---------v~q~~~lf~~ti~~~ni~--~ 176 (305)
T 2v9p_A 113 INALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF---------ANHKSHFWLASLADTRAA--L 176 (305)
T ss_dssp HHHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH---TCEEECG---------GGTTSGGGGGGGTTCSCE--E
T ss_pred hhhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc---CceEEEE---------ecCccccccccHHHHhhc--c
Confidence 358999999999999 99999999999999999999998 7998543 33332 2222 222 2
Q ss_pred eecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 474 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 474 ~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
.... .. .+.+.++.+-..+++ ...+||||+|| ||+|. .+|+++| |++||+...
T Consensus 177 ~~~~---~~--~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll-----~~p~iLl-----Ts~LD~~~~ 229 (305)
T 2v9p_A 177 VDDA---TH--ACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQI-----KAPPLLV-----TSNIDVQAE 229 (305)
T ss_dssp EEEE---CH--HHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEE-----CCCCEEE-----EESSCSTTC
T ss_pred Cccc---cH--HHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHh-----CCCCEEE-----ECCCCHHHH
Confidence 1111 11 233344431112334 56899999999 99999 8999988 999999775
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.20 E-value=3.3e-11 Score=133.30 Aligned_cols=134 Identities=10% Similarity=-0.054 Sum_probs=91.2
Q ss_pred ccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEE-EEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHH
Q 007747 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV-MMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (591)
Q Consensus 409 ~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V-~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~ 487 (591)
.+.+|+ +++|+||||+|||||+..|++.+.+.++++ .+...+.. .|+......+++ +..
T Consensus 277 ~i~~G~--i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~-----~~l~~~~~~~g~---------~~~---- 336 (525)
T 1tf7_A 277 GFFKDS--IILATGATGTGKTLLVSRFVENACANKERAILFAYEESR-----AQLLRNAYSWGM---------DFE---- 336 (525)
T ss_dssp SEESSC--EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH-----HHHHHHHHTTSC---------CHH----
T ss_pred CCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH-----HHHHHHHHHcCC---------CHH----
Confidence 466899 999999999999999999999998875544 44444331 233322222221 211
Q ss_pred HHHHHhhhcC-CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH-----HHHHHHHHHHHHhhcCC
Q 007747 488 EAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV-----DQLSKFNQKLADLSSSP 561 (591)
Q Consensus 488 ~al~~~~~~~-~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~-----~q~~~f~~~L~~l~~~~ 561 (591)
++. ..+... .+..+..+|||++|++.+++++. .+|+++++ | ||+++|.. .+ ..+.+.+..+...+
T Consensus 337 ~~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~-----~~p~llil-D-p~~~Ld~~~~~~~~~-~~i~~ll~~l~~~g 407 (525)
T 1tf7_A 337 EME-RQNLLKIVCAYPESAGLEDHLQIIKSEIND-----FKPARIAI-D-SLSALARGVSNNAFR-QFVIGVTGYAKQEE 407 (525)
T ss_dssp HHH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-E-CHHHHTSSSCHHHHH-HHHHHHHHHHHHTT
T ss_pred HHH-hCCCEEEEEeccccCCHHHHHHHHHHHHHh-----hCCCEEEE-c-ChHHHHhhCChHHHH-HHHHHHHHHHHhCC
Confidence 111 111111 24566788999999999999999 99999999 9 99999987 54 34446777777665
Q ss_pred CCccceEEEe
Q 007747 562 NPQLIDGILL 571 (591)
Q Consensus 562 ~~~~it~IIl 571 (591)
.++.+.+|..
T Consensus 408 ~tvilvsh~~ 417 (525)
T 1tf7_A 408 ITGLFTNTSD 417 (525)
T ss_dssp CEEEEEEECS
T ss_pred CEEEEEECcc
Confidence 5555555555
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.20 E-value=2.4e-11 Score=123.16 Aligned_cols=98 Identities=21% Similarity=0.319 Sum_probs=70.0
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-CcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
.+|++++ +.+|+ +++|+||||||||||+++|++++.|+ .|+|.+.+.++ +++.|.. +.+....
T Consensus 15 ~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i---~~~~~~~-------~~~v~q~-- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI---EYVFKHK-------KSIVNQR-- 78 (261)
T ss_dssp THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC---CSCCCCS-------SSEEEEE--
T ss_pred HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc---eeecCCc-------ceeeeHH--
Confidence 4677887 67888 99999999999999999999999997 89999988764 2333211 0010000
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
..+.+. ..-+..++++|. .+|+++|+ |||+ |+...
T Consensus 79 ---------------~~gl~~--------~~l~~~la~aL~-----~~p~illl-DEp~---D~~~~ 113 (261)
T 2eyu_A 79 ---------------EVGEDT--------KSFADALRAALR-----EDPDVIFV-GEMR---DLETV 113 (261)
T ss_dssp ---------------EBTTTB--------SCHHHHHHHHHH-----HCCSEEEE-SCCC---SHHHH
T ss_pred ---------------HhCCCH--------HHHHHHHHHHHh-----hCCCEEEe-CCCC---CHHHH
Confidence 001110 011689999999 89999999 9999 77654
No 97
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.19 E-value=4.5e-11 Score=132.23 Aligned_cols=148 Identities=13% Similarity=0.068 Sum_probs=95.1
Q ss_pred cccccccccc-ccccCCceEEEEEccCCCcHHHHHHH--HHhhhhcCCcEEEEccccc--------ceeeeecchhhhhh
Q 007747 399 SIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAK--VAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHAR 467 (591)
Q Consensus 399 ~~~iL~~is~-~i~~Gep~ii~LvGpNGsGKTTlL~k--LAg~l~~~~G~V~i~~~Dt--------~RigaveQl~~~~~ 467 (591)
.+.+|++|++ .+++|+ +++|+||||||||||++. ++|++.|..|.|.+.+.+. .++|+++|......
T Consensus 24 g~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 3678999999 999999 999999999999999999 6799998999999998775 24778887544322
Q ss_pred hcccceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC-----CC
Q 007747 468 RLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-----ND 542 (591)
Q Consensus 468 ~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G-----lD 542 (591)
+ +.+.. .+. . ....+ +.+.-+-......+..+|. ..+|+++++ ||||+. +|
T Consensus 102 ~--l~~~~-~~~-~-------------~~~~~--~l~~~~l~~~~~~~~~~LS----~g~~~~lil-De~t~~~~~~~lD 157 (525)
T 1tf7_A 102 K--LFILD-ASP-D-------------PEGQE--VVGGFDLSALIERINYAIQ----KYRARRVSI-DSVTSVFQQYDAS 157 (525)
T ss_dssp S--EEEEE-CCC-C-------------SSCCS--CCSSHHHHHHHHHHHHHHH----HHTCSEEEE-ECSTTTSTTTCCH
T ss_pred c--EEEEe-cCc-c-------------cchhh--hhcccCHHHHHHHHHHHHH----HcCCCEEEE-CCHHHHHHhcCCH
Confidence 1 21111 111 0 00001 1122222222333444443 258999998 999974 57
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
+..+. .+.+.+..+...+.++.+..|.+..
T Consensus 158 ~~~~~-~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 158 SVVRR-ELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp HHHHH-HHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred HHHHH-HHHHHHHHHHHCCCEEEEEecCCCC
Confidence 77664 3447777776654444544454444
No 98
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.19 E-value=1.1e-11 Score=126.39 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=46.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc-EEEEccccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDT 453 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G-~V~i~~~Dt 453 (591)
..+|+++++.+.+|+ +++|+||||+||||++..|++.+.+..| +|.+.+.+.
T Consensus 22 ~~~Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 22 CTGINDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CTTHHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred HHHHHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 567899999999999 9999999999999999999999998866 887776543
No 99
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.18 E-value=2.5e-11 Score=119.10 Aligned_cols=157 Identities=10% Similarity=-0.034 Sum_probs=80.3
Q ss_pred ccccCCceEEEEEccCCCcHHHHHHHHH--hhhhcCCcEEEEcccccc--------eeeeecchhhhhhhcccceeecCC
Q 007747 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVA--YWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQVPIFEKGY 478 (591)
Q Consensus 409 ~i~~Gep~ii~LvGpNGsGKTTlL~kLA--g~l~~~~G~V~i~~~Dt~--------RigaveQl~~~~~~l~v~l~~~~~ 478 (591)
.+++|+ +++|+||||||||||++.|+ +++.+.++.+.+.+.+.. ++|+.+|.......+. ++...
T Consensus 26 gi~~G~--~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~- 100 (251)
T 2ehv_A 26 GFPEGT--TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA--IVDGV- 100 (251)
T ss_dssp SEETTC--EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE--EEC---
T ss_pred CCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE--EEEcc-
Confidence 567899 99999999999999999999 554566666666654431 2444444322222111 11100
Q ss_pred CCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCC----HHHHHHHHHHHH
Q 007747 479 EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND----AVDQLSKFNQKL 554 (591)
Q Consensus 479 ~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD----~~~q~~~f~~~L 554 (591)
. ....... .... ...+..+.. .++..+...+...+|+++++ |||++++| +......+.+.+
T Consensus 101 ~-~~~~~~~--------~~~~-~~~~~~~~~----~~~~~~~~~l~~~~p~~lil-Dep~~~ld~~~d~~~~~~~l~~l~ 165 (251)
T 2ehv_A 101 S-SVVGLPS--------EEKF-VLEDRFNVD----NFLRYIYRVVKAINAKRLVI-DSIPSIALRLEEERKIREVLLKLN 165 (251)
T ss_dssp ---------------------------CCHH----HHHHHHHHHHHHTTCSEEEE-ECHHHHHHHSSSGGGHHHHHHHHH
T ss_pred c-ccccccc--------ccce-eccCcccHH----HHHHHHHHHHHhhCCCEEEE-ccHHHHHhhcCCHHHHHHHHHHHH
Confidence 0 0000000 0000 001111111 11222222223479999999 99999986 233334455677
Q ss_pred HHhhcCCCCccceEEEeccc---------cccC-CcEEEEE
Q 007747 555 ADLSSSPNPQLIDGILLTKF---------DTID-DKHYQWS 585 (591)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~---------D~i~-d~vGals 585 (591)
..+.+.+.++.+..|.+... ..++ |++..+.
T Consensus 166 ~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 166 TILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 77766555555555554443 3455 7766653
No 100
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.15 E-value=3.6e-12 Score=123.58 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=78.8
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-----ceeeeecchhhhhhhcc----c
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQ----V 471 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-----~RigaveQl~~~~~~l~----v 471 (591)
.++++ .++.+|+ +++|+||||||||||+++|+|++....+.+.+.+.+. .++++++|.......+. +
T Consensus 10 ~~~~~--~~i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 10 PTARG--QPAAVGR--VVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp -----------CCC--EEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred cCCCC--CCCCCCC--EEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 34555 4677999 9999999999999999999999852222211211111 24889998765433321 1
Q ss_pred c----eee--cCCCCCHHHHHHHHHHHhhhcCCCcch-hccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC---
Q 007747 472 P----IFE--KGYEKDPAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN--- 541 (591)
Q Consensus 472 ~----l~~--~~~~~d~~~~a~~al~~~~~~~~d~vl-iDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl--- 541 (591)
. ++. ..++..... +.+.+.. ....++ .+..|....+......|. +-+.+|++++| |||+.|+
T Consensus 86 ~~~~~~~~n~~~~g~~~~~-~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~lS--~l~~~p~~~~L-Dep~~~l~~~ 157 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQP-VRAAAAT----GVPVLIEVDLAGARAIKKTMPEAVT--VFLAPPSWQDL-QARLIGRGTE 157 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHH-HHHHHHH----TCCEEEECCHHHHHHHHHHCTTSEE--EEEECSCHHHH-HHHHHTTSCS
T ss_pred eeehhhcCchhhcCCcHHH-HHHHHHc----CCeEEEEeCHHHHHHHHHhcCCcEE--EEEECCCHHHH-HHHHHhcCCC
Confidence 1 111 112222221 1222211 112111 344555443333333221 11268888888 9999998
Q ss_pred -CHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 542 -DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 542 -D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
|+..+ ..+.+.+.++... .+.+.+++|.
T Consensus 158 ~d~~~~-~~l~~~l~~l~~~---~g~tvi~vtH 186 (207)
T 1znw_A 158 TADVIQ-RRLDTARIELAAQ---GDFDKVVVNR 186 (207)
T ss_dssp CHHHHH-HHHHHHHHHHHGG---GGSSEEEECS
T ss_pred CHHHHH-HHHHHHHHHHhhh---ccCcEEEECC
Confidence 55554 3444667777532 2455566653
No 101
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.14 E-value=5.6e-11 Score=124.63 Aligned_cols=148 Identities=24% Similarity=0.249 Sum_probs=93.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce-------------eeeecchhhhhh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------SGAVEQLRTHAR 467 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R-------------igaveQl~~~~~ 467 (591)
.+|+++++.+.+|+ +++|+||||||||||+++|++++.|++|+|.+.+.|+.. +|+++|...
T Consensus 43 ~~l~~i~~~~~~g~--~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~--- 117 (337)
T 2qm8_A 43 DLIDAVLPQTGRAI--RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN--- 117 (337)
T ss_dssp HHHHHHGGGCCCSE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT---
T ss_pred HHHHhCCcccCCCe--EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc---
Confidence 46788999998888 999999999999999999999999999999999988742 333333221
Q ss_pred hcccceeecCCCC---CHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 468 RLQVPIFEKGYEK---DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 468 ~l~v~l~~~~~~~---d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
+......... .......+++..+...+++++++||+|-.+... .+. ...|++++|-+|..+.+.
T Consensus 118 ---~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~----~v~-----~~~d~vl~v~d~~~~~~~- 184 (337)
T 2qm8_A 118 ---AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET----AVA-----DLTDFFLVLMLPGAGDEL- 184 (337)
T ss_dssp ---EEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH----HHH-----TTSSEEEEEECSCC-----
T ss_pred ---cccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh----hHH-----hhCCEEEEEEcCCCcccH-
Confidence 1111000000 112233344444556788999999999654332 233 578988887777655321
Q ss_pred HHHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
..+...+. ...+.++++|+|..
T Consensus 185 ---~~i~~~i~--------~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 185 ---QGIKKGIF--------ELADMIAVNKADDG 206 (337)
T ss_dssp -----CCTTHH--------HHCSEEEEECCSTT
T ss_pred ---HHHHHHHh--------ccccEEEEEchhcc
Confidence 10100010 12456888999964
No 102
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.13 E-value=3.4e-10 Score=118.34 Aligned_cols=79 Identities=11% Similarity=-0.031 Sum_probs=51.5
Q ss_pred cchhccchhHHHHHHH------HHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 500 VVLVDTAGRMQDNEPL------MRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 500 ~vliDtSGg~~qr~~L------araL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
..+..+|||++|++.| +++|. .+|+++|| ||||+|||+..+... .+.|..+...+.++.+.+|-..
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~-----~~p~~lll-DEp~~~LD~~~~~~l-~~~l~~~~~~~~~vi~~sH~~~- 315 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLA-----GEISLLIL-DEPTPYLDEERRRKL-ITIMERYLKKIPQVILVSHDEE- 315 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTT-----TTTCEEEE-ECCCTTCCHHHHHHH-HHHHHHTGGGSSEEEEEESCGG-
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhc-----CCCCEEEE-ECCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEEChHH-
Confidence 3467799999996544 45554 78999999 999999999987544 4677776554333333333322
Q ss_pred ccccCCcEEEEEe
Q 007747 574 FDTIDDKHYQWSM 586 (591)
Q Consensus 574 ~D~i~d~vGals~ 586 (591)
+-.++|++..+.+
T Consensus 316 ~~~~~d~~~~l~~ 328 (339)
T 3qkt_A 316 LKDAADHVIRISL 328 (339)
T ss_dssp GGGGCSEEEEEEE
T ss_pred HHHhCCEEEEEEe
Confidence 3334666655543
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.12 E-value=2e-11 Score=118.05 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=44.4
Q ss_pred ccccccccc-ccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 400 IDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 400 ~~iL~~is~-~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
...|+++.. .+++|+ +++|+||||+||||+++.|++.+.+.+++|.+.+.+.
T Consensus 9 ~~~Ld~~~~ggi~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGF--FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CHHHHGGGTTSEETTC--EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred chHHHHHhcCCCcCCC--EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 345666665 678899 9999999999999999999998888889999887664
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.11 E-value=7.9e-11 Score=137.96 Aligned_cols=137 Identities=16% Similarity=0.202 Sum_probs=86.0
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-CCcEEEEcccccceeeeecchhhhhhhcccceeecCC
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 478 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~ 478 (591)
..++++++|.+.+|+ +++|+||||+||||+|+.|+++... ..|. +..+...+++.+.+ ++...
T Consensus 660 ~~V~ndvsl~~~~g~--i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~--~vpa~~~~i~~~d~-----------i~~~i- 723 (918)
T 3thx_B 660 QYVPNNTDLSEDSER--VMIITGPNMGGKSSYIKQVALITIMAQIGS--YVPAEEATIGIVDG-----------IFTRM- 723 (918)
T ss_dssp SSCCEEEEECTTSCC--EEEEESCCCHHHHHHHHHHHHHHHHHHHTC--CBSSSEEEEECCSE-----------EEEEC-
T ss_pred ceecccccccCCCCe--EEEEECCCCCchHHHHHHHHHHHHHhhcCc--cccchhhhhhHHHH-----------HHHhC-
Confidence 357789999999999 9999999999999999999875432 1111 00111112222221 11110
Q ss_pred CCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhh
Q 007747 479 EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 479 ~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
+. .+ .....+-..+++|++...++++ + .+|+++|| |||++|+|+.+.......++..+.
T Consensus 724 g~------~d--------~l~~~~stfs~em~~~~~il~~-a-----~~p~LlLL-DEP~~GlD~~~~~~i~~~il~~L~ 782 (918)
T 3thx_B 724 GA------AD--------NIYKGRSTFMEELTDTAEIIRK-A-----TSQSLVIL-DELGRGTSTHDGIAIAYATLEYFI 782 (918)
T ss_dssp ------------------------CCHHHHHHHHHHHHHH-C-----CTTCEEEE-ESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred Ch------HH--------HHHHhHHHhhHHHHHHHHHHHh-c-----cCCCEEEE-eCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00 00 0111233458899998888877 4 79999999 999999999988666556676665
Q ss_pred cCCCCccceEEEeccccc
Q 007747 559 SSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 559 ~~~~~~~it~IIlTK~D~ 576 (591)
.. .+.+++++|..-.
T Consensus 783 ~~---~g~tvl~vTH~~e 797 (918)
T 3thx_B 783 RD---VKSLTLFVTHYPP 797 (918)
T ss_dssp HT---TCCEEEEECSCGG
T ss_pred Hh---cCCeEEEEeCcHH
Confidence 42 2455666666533
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.10 E-value=1.2e-11 Score=119.60 Aligned_cols=122 Identities=21% Similarity=0.162 Sum_probs=70.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-------ceeeeecchhhhhhhcccceeecCCCCCHHHHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-------~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~a 489 (591)
+++|+||||||||||+++|+|++. +.| |.+.+.++ .++|++.|.. ....-.+..+ .......
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~-~g~~~~l~~~--~~~~~~~------ 71 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL-SGTRGPLSRV--GLEPPPG------ 71 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET-TSCEEEEEEC--CCCCCSS------
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec-ccceehhhcc--cccCCcc------
Confidence 899999999999999999999999 888 87776544 1355555542 1100000000 0000000
Q ss_pred HHHhhhcCCCcchhccchhHHHHHHHHH----HHHhchhcCCCcEEEEEec--ccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007747 490 IQEATRNGSDVVLVDTAGRMQDNEPLMR----ALSKLIYLNNPDLVLFVGE--ALVGNDAVDQLSKFNQKLADLSSSPNP 563 (591)
Q Consensus 490 l~~~~~~~~d~vliDtSGg~~qr~~Lar----aL~kl~~~~~PdlILLVDE--Pt~GlD~~~q~~~f~~~L~~l~~~~~~ 563 (591)
...........+++++++.....++ |+. .+|+++|+ || |+..+|... .+.|.++.....+
T Consensus 72 ---~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~-----~~~dvlil-DE~g~~~~~~~~~-----~~~l~~~l~~~~~ 137 (189)
T 2i3b_A 72 ---KRECRVGQYVVDLTSFEQLALPVLRNADCSSG-----PGQRVCVI-DEIGKMELFSQLF-----IQAVRQTLSTPGT 137 (189)
T ss_dssp ---SCCEESSSSEECHHHHHTTTTTTTCCCCCCCS-----SCCCCEEE-CCCSTTTTTCSHH-----HHHHHHHHHCSSC
T ss_pred ---ccccccceEEEcchHHHHHHHHHHhhhhHhhc-----cCCCEEEE-eCCCccccccHHH-----HHHHHHHHhCCCc
Confidence 0000112334567887776553322 233 78999999 99 787777643 3555555554433
No 106
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.10 E-value=2e-10 Score=134.82 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=80.8
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-cCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
.++++++|.+.+|+ +++|+||||+||||+|+.|+.... ...|. +..++..+++.+.+ ++... +
T Consensus 650 ~v~ndisl~~~~g~--i~~ItGpNGsGKSTlLr~ial~~~~aq~G~--~vpa~~~~~~~~d~-----------i~~~i-g 713 (934)
T 3thx_A 650 FIPNDVYFEKDKQM--FHIITGPNMGGKSTYIRQTGVIVLMAQIGC--FVPCESAEVSIVDC-----------ILARV-G 713 (934)
T ss_dssp CCCEEEEEETTTBC--EEEEECCTTSSHHHHHHHHHHHHHHHHHTC--CBSEEEEEEECCSE-----------EEEEC-C
T ss_pred eecccceeecCCCe--EEEEECCCCCCHHHHHHHHHHHHHHHhcCC--ccccccccchHHHH-----------HHHhc-C
Confidence 36678999998899 999999999999999999964322 12120 00011111221111 11110 0
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
. .+......|++|.++..++++|.. +.+|+++|| |||++|+|+.+.......++..+..
T Consensus 714 ~-----------------~d~l~~~lStf~~e~~~~a~il~~---a~~~sLlLL-DEp~~GlD~~~~~~i~~~il~~l~~ 772 (934)
T 3thx_A 714 A-----------------GDSQLKGVSTFMAEMLETASILRS---ATKDSLIII-DELGRGTSTYDGFGLAWAISEYIAT 772 (934)
T ss_dssp --------------------------CHHHHHHHHHHHHHHH---CCTTCEEEE-ESCSCSSCHHHHHHHHHHHHHHHHH
T ss_pred c-----------------hhhHHHhHhhhHHHHHHHHHHHHh---ccCCcEEEE-eCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 012233567777777777777732 279999999 9999999999876665566777764
Q ss_pred CCCCccceEEEecccc
Q 007747 560 SPNPQLIDGILLTKFD 575 (591)
Q Consensus 560 ~~~~~~it~IIlTK~D 575 (591)
. .+.+++++|...
T Consensus 773 ~---~g~~vl~aTH~~ 785 (934)
T 3thx_A 773 K---IGAFCMFATHFH 785 (934)
T ss_dssp T---TCCEEEEEESCG
T ss_pred c---CCCEEEEEcCcH
Confidence 3 134455555543
No 107
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.09 E-value=9.9e-12 Score=123.73 Aligned_cols=130 Identities=16% Similarity=0.090 Sum_probs=68.5
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhccc----ce
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV----PI 473 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v----~l 473 (591)
....+|++++|++.+|. +++|+|||||||||++++|++++ |.+.+. .--.++++++|.. ++..+.+ .+
T Consensus 10 ~~~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~ 81 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKA 81 (245)
T ss_dssp -------------CCSE--EEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHH
T ss_pred CCceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCc-CccccCHhHhhhh
Confidence 34568999999999998 99999999999999999999977 222111 0012355666643 2221111 00
Q ss_pred eecCCC-CCH----HHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 474 FEKGYE-KDP----AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 474 ~~~~~~-~d~----~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
....+. .++ ...+.+.++.+ ....+..+-.+|+|+++++.+ +++. .+|+++|+ |||....+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l-~~~~~~~~~~ls~g~~~r~~~-~~~~-----~~~~~lil-Dg~~~~~~~ 148 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNI-VEGKTVEVPTYDFVTHSRLPE-TTVV-----YPADVVLF-EGILVFYSQ 148 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHH-HTTCCEEECCEETTTTEECSS-CEEE-----CCCSEEEE-ECTTTTTSH
T ss_pred hccCCCCCCcccccHHHHHHHHHHH-HCCCCeecccccccccCccCc-eEEe-----cCCCEEEE-eCccccccH
Confidence 001011 001 12223334433 233466677889999998765 3333 68888888 999877654
No 108
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.09 E-value=7.1e-11 Score=140.01 Aligned_cols=143 Identities=18% Similarity=0.111 Sum_probs=88.0
Q ss_pred cccccccccccc-------CCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceee-eecchhhhhhhccc-
Q 007747 401 DILRDVHAAKEQ-------RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG-AVEQLRTHARRLQV- 471 (591)
Q Consensus 401 ~iL~~is~~i~~-------Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Rig-aveQl~~~~~~l~v- 471 (591)
.++++++|.+.+ |+ +++|+||||+||||+|+.| |++.+. .++| +|+|... .+.+
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~--i~~ItGpNgsGKSTlLr~i-Gl~~~~-----------aqiG~~Vpq~~~---~l~v~ 832 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAY--CVLVTGPNMGGKSTLMRQA-GLLAVM-----------AQMGCYVPAEVC---RLTPI 832 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCC--EEEEECCTTSSHHHHHHHH-HHHHHH-----------HTTTCCEESSEE---EECCC
T ss_pred eEeeeeeeccccccccCCCCc--EEEEECCCCCChHHHHHHH-HHHHHH-----------hheeEEeccCcC---CCCHH
Confidence 478889998876 77 9999999999999999999 887641 2345 6776431 1111
Q ss_pred -ceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHH
Q 007747 472 -PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (591)
Q Consensus 472 -~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f 550 (591)
.++.. .+... . + ..-+-..+++|.+ +.++++++ .+|.++|| |||+.|+|+.+....+
T Consensus 833 d~I~~r-ig~~d--~----~--------~~~~stf~~em~~-~a~al~la-----~~~sLlLL-DEp~~Gtd~~dg~~~~ 890 (1022)
T 2o8b_B 833 DRVFTR-LGASD--R----I--------MSGESTFFVELSE-TASILMHA-----TAHSLVLV-DELGRGTATFDGTAIA 890 (1022)
T ss_dssp SBEEEE-CC-----------------------CHHHHHHHH-HHHHHHHC-----CTTCEEEE-ECTTTTSCHHHHHHHH
T ss_pred HHHHHH-cCCHH--H----H--------hhchhhhHHHHHH-HHHHHHhC-----CCCcEEEE-ECCCCCCChHHHHHHH
Confidence 01111 11100 0 0 0111234566654 77888888 89999999 9999999999865555
Q ss_pred HHHHHHhhcC-CCCccceEEEeccccccCCcEE
Q 007747 551 NQKLADLSSS-PNPQLIDGILLTKFDTIDDKHY 582 (591)
Q Consensus 551 ~~~L~~l~~~-~~~~~it~IIlTK~D~i~d~vG 582 (591)
...|..+... +.++.+++|...-+...+++++
T Consensus 891 ~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~ 923 (1022)
T 2o8b_B 891 NAVVKELAETIKCRTLFSTHYHSLVEDYSQNVA 923 (1022)
T ss_dssp HHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSS
T ss_pred HHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcce
Confidence 5778777654 3333333333333344455443
No 109
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.08 E-value=1.1e-10 Score=134.69 Aligned_cols=127 Identities=21% Similarity=0.222 Sum_probs=82.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-cCCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
.++++++|. |+ +++|+||||+||||+|+.|+|+.. +..|.+. .....++|+++|+.. .+++
T Consensus 567 ~vl~disl~---g~--i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--pa~~~~i~~v~~i~~---~~~~-------- 628 (765)
T 1ewq_A 567 FVPNDLEMA---HE--LVLITGPNMAGKSTFLRQTALIALLAQVGSFV--PAEEAHLPLFDGIYT---RIGA-------- 628 (765)
T ss_dssp CCCEEEEES---SC--EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECCCSEEEE---ECCC--------
T ss_pred eEeeeccCC---Cc--EEEEECCCCCChHHHHHHHHhhhhhcccCcee--ehhccceeeHHHhhc---cCCH--------
Confidence 467788887 88 999999999999999999999874 6666542 222345666665211 1110
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc---cCCCCHHHHHHHHHHHHHH
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA---LVGNDAVDQLSKFNQKLAD 556 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP---t~GlD~~~q~~~f~~~L~~ 556 (591)
. +.+....|+++.++..++++|.. ..+|+++|| ||| |+++|+......+.+.|.
T Consensus 629 ~------------------d~l~~g~S~~~~e~~~la~il~~---a~~p~LlLL-DEpgrGTs~lD~~~~~~~i~~~L~- 685 (765)
T 1ewq_A 629 S------------------DDLAGGKSTFMVEMEEVALILKE---ATENSLVLL-DEVGRGTSSLDGVAIATAVAEALH- 685 (765)
T ss_dssp ------------------------CCSHHHHHHHHHHHHHHH---CCTTEEEEE-ESTTTTSCHHHHHHHHHHHHHHHH-
T ss_pred H------------------HHHHhcccHHHHHHHHHHHHHHh---ccCCCEEEE-ECCCCCCCCcCHHHHHHHHHHHHH-
Confidence 0 01112357889899999888831 289999999 999 788887664333333333
Q ss_pred hhcCCCCccceEEEeccc
Q 007747 557 LSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 557 l~~~~~~~~it~IIlTK~ 574 (591)
. .+.+.+++|..
T Consensus 686 --~----~g~~vl~~TH~ 697 (765)
T 1ewq_A 686 --E----RRAYTLFATHY 697 (765)
T ss_dssp --H----HTCEEEEECCC
T ss_pred --h----CCCEEEEEeCC
Confidence 2 24556666654
No 110
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.04 E-value=1.9e-11 Score=126.16 Aligned_cols=147 Identities=19% Similarity=0.170 Sum_probs=68.6
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhh-hhcCCcEEEEccccc------ceeeeecchhhhhhhcccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMAACDT------FRSGAVEQLRTHARRLQVP 472 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~-l~~~~G~V~i~~~Dt------~RigaveQl~~~~~~l~v~ 472 (591)
..++++++|. ++||||||||||||++.|+|. +.|..| |.+.+.++ ..++++.|.......+ .
T Consensus 11 ~~~l~~~~~~--------I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l--t 79 (301)
T 2qnr_A 11 KSVKKGFEFT--------LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRL--T 79 (301)
T ss_dssp -------CEE--------EEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEE--E
T ss_pred EEEEcCCCEE--------EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCc--c
Confidence 4577888774 499999999999999999997 777777 66554432 2356666543222122 1
Q ss_pred eeec-CCCC--CHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC-CCCHHHHHH
Q 007747 473 IFEK-GYEK--DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQLS 548 (591)
Q Consensus 473 l~~~-~~~~--d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~-GlD~~~q~~ 548 (591)
++.. +++. .........+.++. ..++..+.++|||++|++.+++++ .+|++||||. |+|+.+.
T Consensus 80 v~Dt~g~~~~~~~~e~~~~l~~~l~-~~~~~~~~~~sgg~rqrv~~ara~----------~ll~ldePt~~~Ld~~~~-- 146 (301)
T 2qnr_A 80 VVDTPGYGDAINCRDCFKTIISYID-EQFERYLHDESGLNRRHIIDNRVH----------CCFYFISPFGHGLKPLDV-- 146 (301)
T ss_dssp EEEEC-----------CTTHHHHHH-HHHHHHHHHHTSSCCTTCCCCCCC----------EEEEEECSSSSSCCHHHH--
T ss_pred hhhhhhhhhhcCcHHHHHHHHHHHH-HHHHHHHHHhCHHhhhhhhhhhhh----------heeeeecCcccCCCHHHH--
Confidence 1110 1110 00000001111111 112456778899998876554443 3555599998 5999873
Q ss_pred HHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 549 KFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
+.++.+... ..-.+|++|.|..
T Consensus 147 ---~~l~~l~~~----~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 147 ---AFMKAIHNK----VNIVPVIAKADTL 168 (301)
T ss_dssp ---HHHHHHTTT----SCEEEEECCGGGS
T ss_pred ---HHHHHHHhc----CCEEEEEEeCCCC
Confidence 445555421 2345889999975
No 111
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.03 E-value=5.7e-11 Score=125.22 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=47.1
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.+.+|+++ |.+.+|+ +++|+||||||||||+++|+|++.|+.|.|.+.|.+.
T Consensus 58 g~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG 109 (347)
T ss_dssp SCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred CCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH
Confidence 35678899 9999999 9999999999999999999999999999999888653
No 112
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.03 E-value=2e-10 Score=111.28 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=34.3
Q ss_pred ccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-------CCcEEEEccccc
Q 007747 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-------HKVSVMMAACDT 453 (591)
Q Consensus 409 ~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-------~~G~V~i~~~Dt 453 (591)
.+++|+ +++|+||||||||||++.|++.+.+ .++.|.+.+.+.
T Consensus 21 gi~~G~--~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 21 GIETQA--ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SEESSE--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCCc--EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 356888 9999999999999999999997665 344666666554
No 113
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.00 E-value=8.5e-10 Score=116.19 Aligned_cols=227 Identities=16% Similarity=0.134 Sum_probs=117.8
Q ss_pred chHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007747 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (591)
Q Consensus 315 g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il 394 (591)
|+-....+.|.....-|-+++... .-++....++++..-+.++++.+...+. .+.|.+.....+. .....++-
T Consensus 42 Gi~~~~~~kL~~ag~~t~~~~~~~--~~~~L~~~~~~s~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~--~~~~~~is 114 (349)
T 1pzn_A 42 GVGPATAEKLREAGYDTLEAIAVA--SPIELKEVAGISEGTALKIIQAARKAAN---LGTFMRADEYLKK--RATIGRIS 114 (349)
T ss_dssp TCCHHHHHHHHTTTCCSHHHHHTC--CHHHHHHHHCCCHHHHHHHHHHHHHHCS---TTSCEEHHHHHHH--HHTCCEEC
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhC--CHHHHHhhcCCCHHHHHHHHHHHhhhcc---ccCCccHHHHHhh--hccCCeec
Confidence 443456666666665555443211 1223333478898889999998877642 1245544433221 11111111
Q ss_pred CCCCcccccccc-ccccccCCceEEEEEccCCCcHHHHHHHHHhhh--hcCC----cE-EEEcccccceeeeecchhhhh
Q 007747 395 TPRRSIDILRDV-HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHK----VS-VMMAACDTFRSGAVEQLRTHA 466 (591)
Q Consensus 395 ~~~~~~~iL~~i-s~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l--~~~~----G~-V~i~~~Dt~RigaveQl~~~~ 466 (591)
+ ....|+.+ .+.+++|+ ++.|+||||+||||++..|++.+ .|+. |+ |.|.+.++++ ..++..+.
T Consensus 115 T---G~~~LD~lL~ggi~~G~--i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~---~~~i~~i~ 186 (349)
T 1pzn_A 115 T---GSKSLDKLLGGGIETQA--ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIA 186 (349)
T ss_dssp C---SCHHHHHHHTSSEESSE--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC---HHHHHHHH
T ss_pred C---CCHHHHHHhcCCCCCCe--EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC---HHHHHHHH
Confidence 1 22345554 47788999 99999999999999999999987 4443 68 7777777642 11222222
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhch--hcCCCcEEEEEecccCCCCHH
Q 007747 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLI--YLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 467 ~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~--~~~~PdlILLVDEPt~GlD~~ 544 (591)
+.+++ +.. .+++ +..+...-.++++.+.+.+++++..-+ ...+|+++++ |||++++|+.
T Consensus 187 q~~~~---------~~~----~v~~-----ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl-Ds~ta~ld~~ 247 (349)
T 1pzn_A 187 QNRGL---------DPD----EVLK-----HIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV-DSLTSHFRSE 247 (349)
T ss_dssp HTTTC---------CHH----HHGG-----GEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE-ETSSTTHHHH
T ss_pred HHcCC---------CHH----HHhh-----CEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEE-eCchHhhhhh
Confidence 22211 111 0000 000000011344555555555544100 0057888888 9999999874
Q ss_pred H--------H---HHHHHHHHHHhhc-CCCCccceEEEecccc
Q 007747 545 D--------Q---LSKFNQKLADLSS-SPNPQLIDGILLTKFD 575 (591)
Q Consensus 545 ~--------q---~~~f~~~L~~l~~-~~~~~~it~IIlTK~D 575 (591)
. + ...+-..|..+.. .+.++.++.++.++.|
T Consensus 248 ~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 248 YIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 1 1 2233344444443 2344455555555444
No 114
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.93 E-value=2.4e-10 Score=124.01 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=46.8
Q ss_pred ccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc
Q 007747 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (591)
Q Consensus 399 ~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~ 451 (591)
...+|+++ |.+.+|+ +++|+||||||||||+++|+|++.++.|.|.+.|.
T Consensus 144 g~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 35688999 9999999 99999999999999999999999999999999987
No 115
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.92 E-value=1e-09 Score=116.13 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=32.9
Q ss_pred ccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-CcEEEEcc
Q 007747 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAA 450 (591)
Q Consensus 409 ~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-~G~V~i~~ 450 (591)
...+|+ +++|+|||||||||||+.|++++.+. +|.|....
T Consensus 119 ~~~~~g--~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 119 SDVPRG--LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp HHCSSE--EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HhCCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 344666 99999999999999999999999987 56665443
No 116
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.91 E-value=1.6e-09 Score=125.52 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=78.2
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-CCcEEEEcccccceeeeecchhhhhhhcccceeecCCC
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~ 479 (591)
.+++++++. .+|+ +++|+||||+||||+|+.|+|+... ..|.. ......++++++|+.. .+++
T Consensus 596 ~vlndisl~-~~g~--i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~--vpa~~~~i~~~~~i~~---~~~~-------- 659 (800)
T 1wb9_A 596 FIANPLNLS-PQRR--MLIITGPNMGGKSTYMRQTALIALMAYIGSY--VPAQKVEIGPIDRIFT---RVGA-------- 659 (800)
T ss_dssp CCCEEEEEC-SSSC--EEEEECCTTSSHHHHHHHHHHHHHHHTTTCC--BSSSEEEECCCCEEEE---EEC---------
T ss_pred eeeeccccc-CCCc--EEEEECCCCCChHHHHHHHHHHHHHHhcCcc--cchhcccceeHHHHHh---hCCH--------
Confidence 467889998 7888 9999999999999999999997543 22311 1112234555555211 1110
Q ss_pred CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 480 ~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
.+. + . ..+...+++|.+...+ ..++ .+|+++|| |||++|+|+.+....+...+..+..
T Consensus 660 ~d~--l-~------------~~~stf~~e~~~~~~i-l~~a-----~~psLlLL-DEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 660 ADD--L-A------------SGRSTFMVEMTETANI-LHNA-----TEYSLVLM-DEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp -------------------------CHHHHHHHHHH-HHHC-----CTTEEEEE-ESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred HHH--H-H------------hhhhhhhHHHHHHHHH-HHhc-----cCCCEEEE-ECCCCCCChhHHHHHHHHHHHHHHh
Confidence 000 0 0 0011234555532222 2233 78999999 9999999998876554566777765
Q ss_pred CCCCccceEEEeccc
Q 007747 560 SPNPQLIDGILLTKF 574 (591)
Q Consensus 560 ~~~~~~it~IIlTK~ 574 (591)
. .+.+++++|..
T Consensus 718 ~---~g~~vl~~TH~ 729 (800)
T 1wb9_A 718 K---IKALTLFATHY 729 (800)
T ss_dssp T---TCCEEEEECSC
T ss_pred c---cCCeEEEEeCC
Confidence 2 13445555554
No 117
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.91 E-value=1.5e-11 Score=118.68 Aligned_cols=121 Identities=20% Similarity=0.129 Sum_probs=68.8
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~ 491 (591)
+|+ +++|+|||||||||+++.|++++.| .|.+...|.+-... ..+ +..++..+.+ ......+ ...+.++++
T Consensus 5 ~~~--~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~-~~~-~~~~~~~~~~-~~~~~~~-~~~~~~~l~ 75 (211)
T 3asz_A 5 KPF--VIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDL-GHL-PLEERLRVNY-DHPDAFD-LALYLEHAQ 75 (211)
T ss_dssp CCE--EEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCC-TTS-CHHHHHHSCT-TSGGGBC-HHHHHHHHH
T ss_pred CcE--EEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCc-ccc-cHHHhcCCCC-CChhhhh-HHHHHHHHH
Confidence 455 9999999999999999999999876 34444444321000 000 1111111111 0000112 233445565
Q ss_pred HhhhcCC-CcchhccchhHH----HHHHHHHHHHhchhcCCCcEEEEEecccCC-------CCHHHHH
Q 007747 492 EATRNGS-DVVLVDTAGRMQ----DNEPLMRALSKLIYLNNPDLVLFVGEALVG-------NDAVDQL 547 (591)
Q Consensus 492 ~~~~~~~-d~vliDtSGg~~----qr~~LaraL~kl~~~~~PdlILLVDEPt~G-------lD~~~q~ 547 (591)
.+...+. +....++++|++ +++.+++++. .+|.++++ |||+.+ +|+....
T Consensus 76 ~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li-----~~~~ll~~-de~~~~~~d~~i~ld~~~~~ 137 (211)
T 3asz_A 76 ALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVI-----LEGILVLY-PKELRDLMDLKVFVDADADE 137 (211)
T ss_dssp HHHTTCCEEECCEETTTTEECSSCEEECCCSEEE-----EESTTTTS-SHHHHTTCSEEEEEECCHHH
T ss_pred HHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEE-----Eeehhhcc-CHHHHHhcCEEEEEeCCHHH
Confidence 5554433 456788999875 3334444444 66777777 899988 7875543
No 118
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.90 E-value=6.5e-09 Score=105.13 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=77.0
Q ss_pred ccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC----------CcEEEEcccccceeeeecchhhhhhhcccceeecCC
Q 007747 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----------KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 478 (591)
Q Consensus 409 ~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~----------~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~ 478 (591)
.+.+|+ +++|+||||+||||++..|++.+... .+.|.+....- ...++......++..+
T Consensus 26 gl~~G~--i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~----~~~~~~~r~~~~g~~~----- 94 (279)
T 1nlf_A 26 NMVAGT--VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED----PPTAIHHRLHALGAHL----- 94 (279)
T ss_dssp TEETTS--EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS----CHHHHHHHHHHHHTTS-----
T ss_pred CccCCC--EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC----CHHHHHHHHHHHHhhc-----
Confidence 456899 99999999999999999999876531 23333221110 0011111111111111
Q ss_pred CCCHHHHHHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC--CCCHHHH--HHHHHHH
Q 007747 479 EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV--GNDAVDQ--LSKFNQK 553 (591)
Q Consensus 479 ~~d~~~~a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~--GlD~~~q--~~~f~~~ 553 (591)
.. .....+++.+..... +..+..+|+++.+ .+++++ .+|++|++ |||++ ++|.... ...+...
T Consensus 95 --~~-~~~~~~~~~l~l~~~~~~~~~~ls~g~~~---~i~~l~-----~~~~livl-De~~~~~~~d~~~~~~~~~~~~~ 162 (279)
T 1nlf_A 95 --SA-EERQAVADGLLIQPLIGSLPNIMAPEWFD---GLKRAA-----EGRRLMVL-DTLRRFHIEEENASGPMAQVIGR 162 (279)
T ss_dssp --CH-HHHHHHHHHEEECCCTTSCCCTTSHHHHH---HHHHHH-----TTCSEEEE-ECGGGGCCSCTTCHHHHHHHHHH
T ss_pred --Ch-hhhhhccCceEEeecCCCCcccCCHHHHH---HHHHhc-----CCCCEEEE-CCHHHhcCCCcCchHHHHHHHHH
Confidence 11 122333444433332 3445567888754 345676 68999998 99999 8886321 2333355
Q ss_pred HHHhhcCCCCccceEEEeccc
Q 007747 554 LADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~ 574 (591)
|..+... .+++.++++..
T Consensus 163 L~~l~~~---~g~tvi~i~H~ 180 (279)
T 1nlf_A 163 MEAIAAD---TGCSIVFLHHA 180 (279)
T ss_dssp HHHHHHH---HCCEEEEEEEC
T ss_pred HHHHHHH---cCCEEEEEecC
Confidence 6665422 24455555443
No 119
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=3.8e-10 Score=121.80 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=74.6
Q ss_pred CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc--EEEEccccc---ceeeeecchhhhhhhcccc
Q 007747 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV--SVMMAACDT---FRSGAVEQLRTHARRLQVP 472 (591)
Q Consensus 398 ~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G--~V~i~~~Dt---~RigaveQl~~~~~~l~v~ 472 (591)
....++++++|. ++|||+||||||||++.|+|...+..| .+.+....+ ..++++.|.......+ .
T Consensus 22 ~~~~vl~~vsf~--------I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~L--t 91 (418)
T 2qag_C 22 YRKSVKRGFEFT--------LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL--T 91 (418)
T ss_dssp TTTTCC-CCCEE--------EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEE--E
T ss_pred CCEEEecCCCEE--------EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccce--e
Confidence 345678888874 499999999999999999998764332 111111122 2356666643322122 1
Q ss_pred eeec-CCCCC--HHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCc--EEEEEeccc-CCCCHHHH
Q 007747 473 IFEK-GYEKD--PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEAL-VGNDAVDQ 546 (591)
Q Consensus 473 l~~~-~~~~d--~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd--lILLVDEPt-~GlD~~~q 546 (591)
++.. +++.. .......+++++. -.+..++++++.+++++. .+|+ ++|++|||| .|+|+.+.
T Consensus 92 v~Dt~g~~~~~~~~~~~~~i~~~i~--------~~~~~~l~qr~~IaRal~-----~d~~~~vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 92 IVDTPGFGDAVDNSNCWQPVIDYID--------SKFEDYLNAESRVNRRQM-----PDNRVQCCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp EEECC-----------CHHHHHHHH--------HHHHHHTTTSCC-CCCCC-----CCC-CCEEEEECCC-CCSCCHHHH
T ss_pred eeechhhhhhccchhhHHHHHHHHH--------HHHHHHHHHHHHHHHHhc-----cCCCeeEEEEEecCcccCCCHHHH
Confidence 1111 11110 0000011111111 012334556677777766 7777 344449999 69999874
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEeccccccC
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~ 578 (591)
..+..+.. ...-.+|++|+|.+.
T Consensus 159 -----~~lk~L~~----~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 159 -----EFMKRLHE----KVNIIPLIAKADTLT 181 (418)
T ss_dssp -----HHHHHHTT----TSEEEEEEESTTSSC
T ss_pred -----HHHHHHhc----cCcEEEEEEcccCcc
Confidence 33444442 234568999999864
No 120
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.84 E-value=6.5e-10 Score=104.43 Aligned_cols=50 Identities=18% Similarity=0.060 Sum_probs=46.3
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.++++++|.+.+|+ +++|+||||||||||++.|+|++ |..|+|.+.+.++
T Consensus 21 ~~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 21 FAEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 46788999999999 99999999999999999999999 9999999988776
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.83 E-value=6.6e-10 Score=117.17 Aligned_cols=130 Identities=13% Similarity=0.082 Sum_probs=75.6
Q ss_pred ccccccccccc--CCceEEEEEccCCCcHHHHHHHHHhhhhcCC----cEEEEc----cccc-------ceeeeecchhh
Q 007747 402 ILRDVHAAKEQ--RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK----VSVMMA----ACDT-------FRSGAVEQLRT 464 (591)
Q Consensus 402 iL~~is~~i~~--Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~----G~V~i~----~~Dt-------~RigaveQl~~ 464 (591)
+...|++.+.+ |+ .++|+||||||||||+++|+|++.|.. |+|.+. +.+. .+++++.|...
T Consensus 157 ~~~~v~~~v~~~lg~--k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAK--TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCE--EEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhC--eEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHH
Confidence 34568888888 98 999999999999999999999999988 887763 2221 12455554332
Q ss_pred hhh---hcccceeecCCCCCHH-HHHH---------HHHHHh-hhcCCCcchhc------------cchhHHHHHHHHHH
Q 007747 465 HAR---RLQVPIFEKGYEKDPA-IVAK---------EAIQEA-TRNGSDVVLVD------------TAGRMQDNEPLMRA 518 (591)
Q Consensus 465 ~~~---~l~v~l~~~~~~~d~~-~~a~---------~al~~~-~~~~~d~vliD------------tSGg~~qr~~Lara 518 (591)
... .-++.+.. .+.. .... ..+..+ ...+++..+.| ++++++++..++++
T Consensus 235 ~~~~t~~~nl~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~ 310 (365)
T 1lw7_A 235 DYAVRHSHKIAFID----TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQL 310 (365)
T ss_dssp HHHHHHCSSEEEES----SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHH
T ss_pred HHHHhccCCEEEEe----CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHH
Confidence 110 00121211 1110 0000 011111 12245554443 46778888888888
Q ss_pred HHhchhcCCCcEEEEEeccc
Q 007747 519 LSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 519 L~kl~~~~~PdlILLVDEPt 538 (591)
|.++....++.++++ |||+
T Consensus 311 l~~l~~~~~~~ilil-de~~ 329 (365)
T 1lw7_A 311 LKKLLDKYKVPYIEI-ESPS 329 (365)
T ss_dssp HHHHHHGGGCCCEEE-ECSS
T ss_pred HHHHHHHcCCCEEEe-CCCC
Confidence 876655557777777 8885
No 122
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.82 E-value=1.3e-08 Score=107.75 Aligned_cols=73 Identities=8% Similarity=-0.029 Sum_probs=50.8
Q ss_pred chh-ccchhHHHHHHHHHHHHhc--hh--cCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 501 VLV-DTAGRMQDNEPLMRALSKL--IY--LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 501 vli-DtSGg~~qr~~LaraL~kl--~~--~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
.+. .+||||+|++.|+++|+++ +. ..+|+++|| ||||++||+..+...+ +.+..+. .+.|+.|..+
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLL-DEp~s~LD~~~~~~l~-~~l~~~~-------qt~i~~th~~ 331 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLL-DDFTAELDPHRRQYLL-DLAASVP-------QAIVTGTELA 331 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEE-CCGGGCCCHHHHHHHH-HHHHHSS-------EEEEEESSCC
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEE-eCccccCCHHHHHHHH-HHHHhcC-------cEEEEEEecc
Confidence 344 5899999999999999842 21 258999999 9999999999875433 4444331 4556666644
Q ss_pred ccCCcEE
Q 007747 576 TIDDKHY 582 (591)
Q Consensus 576 ~i~d~vG 582 (591)
..++++.
T Consensus 332 ~~~~~i~ 338 (359)
T 2o5v_A 332 PGAALTL 338 (359)
T ss_dssp TTCSEEE
T ss_pred ccCCEEE
Confidence 4455543
No 123
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.81 E-value=2.3e-09 Score=102.38 Aligned_cols=146 Identities=15% Similarity=0.057 Sum_probs=76.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh-----hcCCcEEEEcc-------cccce-eeeec-------
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-----LQHKVSVMMAA-------CDTFR-SGAVE------- 460 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l-----~~~~G~V~i~~-------~Dt~R-igave------- 460 (591)
.++++ |.+.+|. .++|+|+||||||||++.|+|.. .|+.|.+.+.+ ..+.. .|...
T Consensus 16 ~~l~~--~~~~~~~--~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 91 (210)
T 1pui_A 16 PDIRH--LPSDTGI--EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEM 91 (210)
T ss_dssp SSGGG--SSCSCSE--EEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CC
T ss_pred CCHhH--CCCCCCc--EEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHH
Confidence 45666 6667777 99999999999999999999887 66666654322 11110 22211
Q ss_pred --chh----hhhh---hcc-cc-eeecCCCCCHHHHHHHHHHHhhhcCCCcch----hc-cchhHHHH-HHHHHHHHhch
Q 007747 461 --QLR----THAR---RLQ-VP-IFEKGYEKDPAIVAKEAIQEATRNGSDVVL----VD-TAGRMQDN-EPLMRALSKLI 523 (591)
Q Consensus 461 --Ql~----~~~~---~l~-v~-l~~~~~~~d~~~~a~~al~~~~~~~~d~vl----iD-tSGg~~qr-~~LaraL~kl~ 523 (591)
+.+ .+.+ ... +- ++.......... .++...+...+...++ +| ++++++++ +..+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~--- 166 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV--- 166 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH---
Confidence 111 1111 111 11 111111122211 1222222233333222 34 48888887 67888887
Q ss_pred hcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhc
Q 007747 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (591)
Q Consensus 524 ~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~ 559 (591)
.+|..+++ |||++++|.......+ +.|..+..
T Consensus 167 --~~~~~~~~-~~~~Sal~~~~~~~l~-~~l~~~~~ 198 (210)
T 1pui_A 167 --LAFNGDVQ-VETFSSLKKQGVDKLR-QKLDTWFS 198 (210)
T ss_dssp --GGGCSCEE-EEECBTTTTBSHHHHH-HHHHHHHC
T ss_pred --HhcCCCCc-eEEEeecCCCCHHHHH-HHHHHHHh
Confidence 67776677 9999999998775555 45555443
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.79 E-value=9.1e-09 Score=109.26 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=38.7
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-CcEEEEcccc
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACD 452 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-~G~V~i~~~D 452 (591)
+|++++ +.+|+ +++|+||||||||||+++|++++.+. .|+|.+.+.+
T Consensus 127 ~l~~l~--~~~g~--~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 127 KVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp SHHHHT--TSSSE--EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred HHHHHh--hcCCC--EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 344443 45777 99999999999999999999999987 8999877654
No 125
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.76 E-value=4.3e-08 Score=92.19 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=29.0
Q ss_pred ccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc
Q 007747 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444 (591)
Q Consensus 409 ~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G 444 (591)
.+.+|+ .++|+||||+||||+++.|++.+.+..|
T Consensus 34 ~~~~g~--~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 34 NPEEGK--GLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp CGGGCC--EEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred cccCCC--EEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 344677 9999999999999999999999976544
No 126
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.71 E-value=2.4e-08 Score=107.87 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=82.9
Q ss_pred ccccccccccCCceE--EEEEccCCCcHHHHHHHHHhhhhcCCcE-EEE-ccccc-ceeeeecchhhhhhhcccc-eeec
Q 007747 403 LRDVHAAKEQRKPYV--VVFVGVNGVGKSTNLAKVAYWLLQHKVS-VMM-AACDT-FRSGAVEQLRTHARRLQVP-IFEK 476 (591)
Q Consensus 403 L~~is~~i~~Gep~i--i~LvGpNGsGKTTlL~kLAg~l~~~~G~-V~i-~~~Dt-~RigaveQl~~~~~~l~v~-l~~~ 476 (591)
|++++|.+.+|+ + ++|||||||||||||+.|+|+.. .|. +.- ....+ .++++++|...+...+.+. ....
T Consensus 30 L~~vsl~i~~Ge--i~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 30 DQLVNKSVSQGF--CFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp HHHHHHSCC-CC--EEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred cCCCceEecCCC--eeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 889999999999 8 99999999999999999999842 121 110 00111 2478888865433222211 0000
Q ss_pred CCCCCHH-----------HHHHHHHHHh-hhc----C-CC------c-chhccchh-HHHHHHHHHHHHhchhcCCCcEE
Q 007747 477 GYEKDPA-----------IVAKEAIQEA-TRN----G-SD------V-VLVDTAGR-MQDNEPLMRALSKLIYLNNPDLV 531 (591)
Q Consensus 477 ~~~~d~~-----------~~a~~al~~~-~~~----~-~d------~-vliDtSGg-~~qr~~LaraL~kl~~~~~PdlI 531 (591)
+...+.. ....+.+... ... . .| + .++|+..+ ....+.+|++|. .++.+|
T Consensus 106 g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-----~~~~vI 180 (427)
T 2qag_B 106 GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-----SKVNII 180 (427)
T ss_dssp CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-----SCSEEE
T ss_pred hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-----hCCCEE
Confidence 1111110 1111222211 111 0 11 1 12444333 345577888887 677777
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHH-hhcCCCCccceEEEecc
Q 007747 532 LFVGEALVGNDAVDQLSKFNQKLAD-LSSSPNPQLIDGILLTK 573 (591)
Q Consensus 532 LLVDEPt~GlD~~~q~~~f~~~L~~-l~~~~~~~~it~IIlTK 573 (591)
++ ++|+..+.+......+ +.+.. +... ++..+.++-
T Consensus 181 ~V-i~KtD~Lt~~E~~~l~-~~I~~~L~~~----gi~I~~is~ 217 (427)
T 2qag_B 181 PI-IAKADAISKSELTKFK-IKITSELVSN----GVQIYQFPT 217 (427)
T ss_dssp EE-ESCGGGSCHHHHHHHH-HHHHHHHBTT----BCCCCCCC-
T ss_pred EE-EcchhccchHHHHHHH-HHHHHHHHHc----CCcEEecCC
Confidence 77 9999999887754444 55553 6554 444455553
No 127
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.70 E-value=1.8e-08 Score=106.53 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=45.5
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D 452 (591)
++++++++.+.+|+ +++|+||||||||||++.|++++.|+.|.|.+.+.+
T Consensus 163 ~~~~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~ 212 (361)
T 2gza_A 163 DYMSFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP 212 (361)
T ss_dssp CHHHHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS
T ss_pred HHHHHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc
Confidence 35678899999999 999999999999999999999999999999998653
No 128
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.70 E-value=4.8e-09 Score=118.23 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=28.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhc-CCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~-~~G~V~i~~~Dt 453 (591)
.++|||||||||||+|+.|+|++.| +.|.|.+.+.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 4999999999999999999999988 799999888774
No 129
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.67 E-value=3.1e-08 Score=104.19 Aligned_cols=137 Identities=22% Similarity=0.292 Sum_probs=76.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce---eeeecchhhhhhhccc--ceeec---------CCCCC
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVEQLRTHARRLQV--PIFEK---------GYEKD 481 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R---igaveQl~~~~~~l~v--~l~~~---------~~~~d 481 (591)
.+++|+|++|||||||++.|++++.+.+++|.+.+.|++. .|++...+...+.++. ..+.. +...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~ 154 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRT 154 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHH
Confidence 4999999999999999999999999999999999999854 3444443333222221 01110 11111
Q ss_pred HHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC
Q 007747 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (591)
Q Consensus 482 ~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~ 561 (591)
. .+++..+...+++++++||+|-.+.. ..+. ...|++++|-+|..|.+... +.. .+.
T Consensus 155 ~----~~~~~~~~~~~~~~iliDT~Gi~~~~----~~l~-----~~~d~vl~V~d~~~~~~~~~----i~~---~il--- 211 (349)
T 2www_A 155 T----NEAILLCEGAGYDIILIETVGVGQSE----FAVA-----DMVDMFVLLLPPAGGDELQG----IKR---GII--- 211 (349)
T ss_dssp H----HHHHHHHHHTTCSEEEEECCCC--CH----HHHH-----TTCSEEEEEECCC-------------------C---
T ss_pred H----HHHHHhhccCCCCEEEEECCCcchhh----hhHH-----hhCCEEEEEEcCCcchhHHH----hHH---HHH---
Confidence 1 22333344567899999999954332 2234 57898888888877643211 101 111
Q ss_pred CCccceEEEecccccc
Q 007747 562 NPQLIDGILLTKFDTI 577 (591)
Q Consensus 562 ~~~~it~IIlTK~D~i 577 (591)
.....++++|+|..
T Consensus 212 --~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 212 --EMADLVAVTKSDGD 225 (349)
T ss_dssp --CSCSEEEECCCSGG
T ss_pred --hcCCEEEEeeecCC
Confidence 12457899999985
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.66 E-value=1.2e-07 Score=91.06 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=62.2
Q ss_pred cccccc-ccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc-ceeeeecchhhhhhhcccceeecCCCC
Q 007747 403 LRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-FRSGAVEQLRTHARRLQVPIFEKGYEK 480 (591)
Q Consensus 403 L~~is~-~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt-~RigaveQl~~~~~~l~v~l~~~~~~~ 480 (591)
|+.+.. .+++|+ +++|+||||+||||++..|++ +.++.|.+...+. +.. .++..+.+.++ .
T Consensus 9 LD~~l~Ggi~~G~--~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~---~~~~~~~~~~~---------~ 71 (220)
T 2cvh_A 9 LDSLLGGGFAPGV--LTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSP---ERLVQMAETRG---------L 71 (220)
T ss_dssp HHHHTTSSBCTTS--EEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCH---HHHHHHHHTTT---------C
T ss_pred HHHhhcCCCcCCE--EEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCH---HHHHHHHHhcC---------C
Confidence 444433 466888 999999999999999999999 3455666654432 111 11111111111 1
Q ss_pred CHHHHHHHHHHHhhhcCCCcchhccchhHH--HHHHHHHHHHhchhcC-CCcEEEEEecccCCCCH
Q 007747 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQ--DNEPLMRALSKLIYLN-NPDLVLFVGEALVGNDA 543 (591)
Q Consensus 481 d~~~~a~~al~~~~~~~~d~vliDtSGg~~--qr~~LaraL~kl~~~~-~PdlILLVDEPt~GlD~ 543 (591)
+... .++ ...+.+.+++++ +.+..++++. . +|+++++ |||++.+|.
T Consensus 72 ~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~llii-D~~~~~l~~ 120 (220)
T 2cvh_A 72 NPEE----ALS-------RFILFTPSDFKEQRRVIGSLKKTV-----DSNFALVVV-DSITAHYRA 120 (220)
T ss_dssp CHHH----HHH-------HEEEECCTTTSHHHHHHHHHHHHC-----CTTEEEEEE-ECCCCCTTG
T ss_pred ChHH----Hhh-------cEEEEecCCHHHHHHHHHHHHHHh-----hcCCCEEEE-cCcHHHhhh
Confidence 2211 111 112344455543 3445555555 3 5888888 999999986
No 131
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.64 E-value=4.5e-08 Score=102.43 Aligned_cols=153 Identities=23% Similarity=0.234 Sum_probs=84.3
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccccee---eeecchhhhhhhc----cccee
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---GAVEQLRTHARRL----QVPIF 474 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Ri---gaveQl~~~~~~l----~v~l~ 474 (591)
++.++++....+. +++|+|++|+||||+++.|++.+.+.+++|.+.+.|.++. |.+.......+.+ +..+.
T Consensus 45 ~~~~l~~~~~~~~--~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~ 122 (341)
T 2p67_A 45 LLDAIMPYCGNTL--RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR 122 (341)
T ss_dssp HHHHHGGGCSCSE--EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEE
T ss_pred HHHhCCcccCCCE--EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceee
Confidence 3445566555665 9999999999999999999999999999999999998542 1111111111111 11111
Q ss_pred ecCCC---CCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHH
Q 007747 475 EKGYE---KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (591)
Q Consensus 475 ~~~~~---~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~ 551 (591)
..... ........+.+..+...+++++++||+|-...... +. ...|.+|+|-+|..+.+. . .+.
T Consensus 123 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~----~~-----~~aD~vl~Vvd~~~~~~~-~---~l~ 189 (341)
T 2p67_A 123 PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE----VA-----RMVDCFISLQIAGGGDDL-Q---GIK 189 (341)
T ss_dssp EECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH----HH-----TTCSEEEEEECC-------C---CCC
T ss_pred cCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH----HH-----HhCCEEEEEEeCCccHHH-H---HHH
Confidence 10000 01111222333333456789999999995432221 23 688999988888765321 1 000
Q ss_pred HHHHHhhcCCCCccceEEEecccccc
Q 007747 552 QKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
... . .....++++|+|..
T Consensus 190 ~~~--~------~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 190 KGL--M------EVADLIVINKDDGD 207 (341)
T ss_dssp HHH--H------HHCSEEEECCCCTT
T ss_pred Hhh--h------cccCEEEEECCCCC
Confidence 000 0 02346999999985
No 132
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.60 E-value=1.5e-07 Score=98.93 Aligned_cols=144 Identities=24% Similarity=0.276 Sum_probs=84.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc---ceeeeecchhhhhhhc----ccceeecCCCCC---H
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---FRSGAVEQLRTHARRL----QVPIFEKGYEKD---P 482 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt---~RigaveQl~~~~~~l----~v~l~~~~~~~d---~ 482 (591)
+++.+++|+|+.||||||+++.|+..+...+.+|.+..+|+ ++.|++.+.+.....+ ++.+........ .
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 34569999999999999999999998888888999999995 4456665554433222 233222222211 1
Q ss_pred HHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007747 483 AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (591)
Q Consensus 483 ~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (591)
.....+++..+...+++++++||+|-.+... .+. ...|++|+|-+|..+.+... +. .. .
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~----~~~-----~~aD~vl~V~d~~~~~~~~~--------l~---~~-~ 215 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQSEV----AVA-----NMVDTFVLLTLARTGDQLQG--------IK---KG-V 215 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSHHH----HHH-----TTCSEEEEEEESSTTCTTTT--------CC---TT-S
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcHHH----HHH-----HhCCEEEEEECCCCCccHHH--------HH---Hh-H
Confidence 2333455556666788999999998433222 223 67899988888876643210 10 00 0
Q ss_pred CccceEEEecccccc
Q 007747 563 PQLIDGILLTKFDTI 577 (591)
Q Consensus 563 ~~~it~IIlTK~D~i 577 (591)
......++++|+|..
T Consensus 216 ~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 216 LELADIVVVNKADGE 230 (355)
T ss_dssp GGGCSEEEEECCCGG
T ss_pred hhcCCEEEEECCCCc
Confidence 012567999999974
No 133
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.60 E-value=3.9e-08 Score=96.91 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=40.7
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhc--CCcEEEEcccccc-----eeeeecchhhh
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTF-----RSGAVEQLRTH 465 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~--~~G~V~i~~~Dt~-----RigaveQl~~~ 465 (591)
.++|+ +++|+||||||||||+++|+|++.| ..|.|.+.+.+.. .++|++|....
T Consensus 13 ~~~G~--ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~ 73 (219)
T 1s96_A 13 MAQGT--LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE 73 (219)
T ss_dssp --CCC--EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH
Confidence 45788 9999999999999999999999875 5677777665432 25666665443
No 134
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.60 E-value=6e-08 Score=94.56 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=33.0
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhh--hhc-----CCcEEEEccccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQ-----HKVSVMMAACDT 453 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~--l~~-----~~G~V~i~~~Dt 453 (591)
+++|+ +++|+||||+||||++..|++. +.+ ..+.+.+.+.+.
T Consensus 21 i~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 21 IETGS--ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp EETTS--EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcCCe--EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 45888 9999999999999999999984 443 455666666553
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.58 E-value=7.3e-08 Score=89.19 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=26.6
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcC
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH 442 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~ 442 (591)
+|+ +++|+||||+||||+++.|++.+.+.
T Consensus 35 ~g~--~~~l~G~~G~GKTtL~~~i~~~~~~~ 63 (149)
T 2kjq_A 35 HGQ--FIYVWGEEGAGKSHLLQAWVAQALEA 63 (149)
T ss_dssp CCS--EEEEESSSTTTTCHHHHHHHHHHHTT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 577 99999999999999999999998874
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.57 E-value=1.6e-09 Score=103.11 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=57.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcC---CcEEEEcccccceeee--ecchhh-hhh----hc--ccceeecCCCCCHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFRSGA--VEQLRT-HAR----RL--QVPIFEKGYEKDPAI 484 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~---~G~V~i~~~Dt~Riga--veQl~~-~~~----~l--~v~l~~~~~~~d~~~ 484 (591)
+++|+|++||||||+++.|++++.+. .|.|.+.+.+++.+.. ...++. ... .. +..++... .+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~--~~~~~ 81 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR--VSEEE 81 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE--CCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec--CChhh
Confidence 89999999999999999999999998 6899988876432210 111110 000 00 00011111 12221
Q ss_pred --HHHHHHHH-hhhcCCCcchhc-cchhHHHHHHHHHHHHh
Q 007747 485 --VAKEAIQE-ATRNGSDVVLVD-TAGRMQDNEPLMRALSK 521 (591)
Q Consensus 485 --~a~~al~~-~~~~~~d~vliD-tSGg~~qr~~LaraL~k 521 (591)
.+.+.+.. +. ++|..+.+ +|||++||+.|+|++..
T Consensus 82 ~a~l~~~i~~~l~--g~dt~i~EglSgGq~qri~lARall~ 120 (171)
T 2f1r_A 82 GNDLDWIYERYLS--DYDLVITEGFSKAGKDRIVVVKKPEE 120 (171)
T ss_dssp HTCHHHHHHHHTT--TCSEEEEESCGGGCCCEEEECSSGGG
T ss_pred hhCHHHHHHhhCC--CCCEEEECCcCCCCCcEEEEEecccC
Confidence 22333333 32 67766554 79999999999999984
No 137
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.54 E-value=1e-08 Score=108.52 Aligned_cols=112 Identities=15% Similarity=0.044 Sum_probs=67.0
Q ss_pred cccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh-cCCcEEEEc-cccc-----ceeeeecchhhhhhhcccceeec
Q 007747 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMA-ACDT-----FRSGAVEQLRTHARRLQVPIFEK 476 (591)
Q Consensus 404 ~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~-~~~G~V~i~-~~Dt-----~RigaveQl~~~~~~l~v~l~~~ 476 (591)
+++++.. +|+ +++|+|||||||||||+.|+|.+. +..|.|.+. |.+. .++++++|...+....++.-+.
T Consensus 207 ~~L~~~~-~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~- 282 (358)
T 2rcn_A 207 KPLEEAL-TGR--ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG- 282 (358)
T ss_dssp HHHHHHH-TTS--EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC-
T ss_pred HHHHHhc-CCC--EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh-
Confidence 3444432 677 999999999999999999999999 999999886 4321 3578888754433333321111
Q ss_pred CCCCCHHHH---HHHHHHHhhhcCC-CcchhccchhHHHHHHHHHHHH
Q 007747 477 GYEKDPAIV---AKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALS 520 (591)
Q Consensus 477 ~~~~d~~~~---a~~al~~~~~~~~-d~vliDtSGg~~qr~~LaraL~ 520 (591)
......... +.++++.+++..+ +.....+| |+++++++++++.
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 112223222 2233444444443 56777889 9999999988664
No 138
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.51 E-value=2.9e-08 Score=108.84 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=47.5
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
..+|++++|++++ + +++|+|||||||||||++|+|++.|+.|+|.+.|.++
T Consensus 17 ~~~l~~vsl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-L--VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-S--EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-c--eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 3578999999999 8 9999999999999999999999999999999998776
No 139
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.48 E-value=1.6e-08 Score=104.03 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=69.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhhhhcCC---cEEEEcccccceeeeecchhhhhhhccc-----ceee-cC-CCCCH
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK---VSVMMAACDTFRSGAVEQLRTHARRLQV-----PIFE-KG-YEKDP 482 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~---G~V~i~~~Dt~RigaveQl~~~~~~l~v-----~l~~-~~-~~~d~ 482 (591)
+.|.+|+|+|++||||||++++|++++.+.+ ..+.++..|.|-... ....++.. +++. .+ .....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~-----~~~~~l~~~~~~~~l~~~~g~p~a~d 103 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTH-----EDQLKLNEQFKNNKLLQGRGLPGTHD 103 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCH-----HHHHHHHHHTTTCGGGSSSCSTTSBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCCh-----HHHHHHhccccccchhhhccCcchhH
Confidence 4566999999999999999999999997642 134443556542110 11111111 1111 01 11111
Q ss_pred HHHHHHHHHHhhhc------C---CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 483 AIVAKEAIQEATRN------G---SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 483 ~~~a~~al~~~~~~------~---~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
.....+.+..+... . ....-..+|||++++++++++.. .+|+++|+ ||+++++|+.
T Consensus 104 ~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~-----~~~~IlIl-EG~~~~ld~~ 168 (290)
T 1odf_A 104 MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIK-----LPVDIFIL-EGWFLGFNPI 168 (290)
T ss_dssp HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEE-----SSCSEEEE-EESSTTCCCC
T ss_pred HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceE-----cCCCEEEE-eCccccCCcc
Confidence 22333444443221 0 11223467999999887765444 37888888 9999999974
No 140
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.46 E-value=2.6e-07 Score=85.80 Aligned_cols=78 Identities=12% Similarity=-0.002 Sum_probs=55.8
Q ss_pred CcchhccchhHHHHHHHH------HHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 499 DVVLVDTAGRMQDNEPLM------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 499 d~vliDtSGg~~qr~~La------raL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
+..+..+||||+|++.|+ ++|. .+|+++|| ||||+|||+..+. .+.+.+..+...+.++.+.+|..
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~-----~~p~lllL-DEPt~~LD~~~~~-~l~~~l~~~~~~~~tiiivsH~~- 123 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLA-----GEISLLIL-DEPTPYLDEERRR-KLITIMERYLKKIPQVILVSHDE- 123 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHH-----SSCSEEEE-ESCSCTTCHHHHH-HHHHHHHHTGGGSSEEEEEESCG-
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHc-----CCCCEEEE-ECCCccCCHHHHH-HHHHHHHHHHccCCEEEEEEChH-
Confidence 455678999999999886 7777 89999999 9999999998864 45577777765444444444444
Q ss_pred cccccCCcEEEE
Q 007747 573 KFDTIDDKHYQW 584 (591)
Q Consensus 573 K~D~i~d~vGal 584 (591)
.+..++|++..+
T Consensus 124 ~~~~~~d~ii~l 135 (148)
T 1f2t_B 124 ELKDAADHVIRI 135 (148)
T ss_dssp GGGGGCSEEEEE
T ss_pred HHHHhCCEEEEE
Confidence 234456665544
No 141
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.43 E-value=3.9e-08 Score=97.49 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=32.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHH---hhhhcCCcEEEEcccc
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVA---YWLLQHKVSVMMAACD 452 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLA---g~l~~~~G~V~i~~~D 452 (591)
|.+++|+|||||||||+++.|+ |+..++.|.|.+.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 3499999999999999999999 8888888887766543
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=6.9e-07 Score=92.37 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=26.1
Q ss_pred EEEEccCCCcHHHHHHHHHh-hhhcCCcEEEEccccc
Q 007747 418 VVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACDT 453 (591)
Q Consensus 418 i~LvGpNGsGKTTlL~kLAg-~l~~~~G~V~i~~~Dt 453 (591)
+.|+||||+||||+++.|++ ++.+..|.|.+.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 89999999999999999999 6778889888876553
No 143
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.36 E-value=2e-07 Score=88.70 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=38.8
Q ss_pred cccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc---------eeeeecchhhhhh
Q 007747 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHAR 467 (591)
Q Consensus 408 ~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~---------RigaveQl~~~~~ 467 (591)
+++.+|+ +++|+|||||||||++++|++++ | .+.+.+.++. .+++++|......
T Consensus 2 ~~m~~g~--ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (205)
T 3tr0_A 2 NAMNKAN--LFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64 (205)
T ss_dssp ---CCCC--EEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CcCCCCc--EEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHH
Confidence 4456788 99999999999999999999986 3 4666554442 3678888665433
No 144
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.35 E-value=5.6e-08 Score=100.19 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=63.1
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEE---cccccc---------eeeeecchhhh----------hhhc
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDTF---------RSGAVEQLRTH----------ARRL 469 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i---~~~Dt~---------RigaveQl~~~----------~~~l 469 (591)
.|+ +++|+||||||||||++.|+ .+.|..|.|.+ .|.++. ++|++.|.+.+ .+++
T Consensus 164 ~G~--i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l 240 (302)
T 2yv5_A 164 EGF--ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPREV 240 (302)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGGG
T ss_pred cCc--EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHHH
Confidence 577 99999999999999999999 99999999999 776652 36888775411 1222
Q ss_pred --ccc----e---eec-CCCCCHHHHHHHHHHHhhhcC--CCcchhccchhHHHHHHHHH
Q 007747 470 --QVP----I---FEK-GYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMR 517 (591)
Q Consensus 470 --~v~----l---~~~-~~~~d~~~~a~~al~~~~~~~--~d~vliDtSGg~~qr~~Lar 517 (591)
.++ + +.. ....++...+.++++..++.. ++.++..+||..++.+.++|
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122 0 111 112234445667777665542 35566677886677777765
No 145
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.34 E-value=1.7e-07 Score=96.64 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=35.9
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhh--cCCcEEEEcccccc
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTF 454 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~--~~~G~V~i~~~Dt~ 454 (591)
+|+ +++|+|||||||||++++|++++. |++|+|.+...|-+
T Consensus 79 ~g~--iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 79 IPY--IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCE--EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCE--EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 455 999999999999999999999998 89999999655543
No 146
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.33 E-value=2.5e-06 Score=91.54 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=99.1
Q ss_pred cchHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Q 007747 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (591)
Q Consensus 314 ~g~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~i 393 (591)
.|+-....+.|......|-+++... .-++....++++..-+.++++.+++... ..|.+.....+. ...+.++
T Consensus 89 ~gi~~~~~~~L~~ag~~tv~~~~~~--~~~~L~~~~gis~~~~~~i~~~a~~~~~----~~~~ta~~l~~~--~~~~~~i 160 (400)
T 3lda_A 89 NGITMADVKKLRESGLHTAEAVAYA--PRKDLLEIKGISEAKADKLLNEAARLVP----MGFVTAADFHMR--RSELICL 160 (400)
T ss_dssp TTCCHHHHHHHHHTTCCBHHHHHHS--CHHHHHTSTTCCHHHHHHHHHHHHHHSC----CSCCCHHHHHHH--HHTSCEE
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHhC--CHHHHHHHhCCCHHHHHHHHHHHHHhcc----ccCCCHHHHHhh--hccCCcc
Confidence 3444566777777666665554321 1223233469999999999998876442 134443332221 1111111
Q ss_pred cCCCCccccccccc-cccccCCceEEEEEccCCCcHHHHHHHHH--hhhhcC-----CcEEEEcccccceeeeecchhhh
Q 007747 394 LTPRRSIDILRDVH-AAKEQRKPYVVVFVGVNGVGKSTNLAKVA--YWLLQH-----KVSVMMAACDTFRSGAVEQLRTH 465 (591)
Q Consensus 394 l~~~~~~~iL~~is-~~i~~Gep~ii~LvGpNGsGKTTlL~kLA--g~l~~~-----~G~V~i~~~Dt~RigaveQl~~~ 465 (591)
-+ ...-|+.+- --+.+|+ +++|+||+|+|||||+..|| +.+.+. ++.|+|.+.++++. ..++.+
T Consensus 161 ~T---G~~~LD~lLgGGI~~Ge--i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~---~rl~~~ 232 (400)
T 3lda_A 161 TT---GSKNLDTLLGGGVETGS--ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP---VRLVSI 232 (400)
T ss_dssp CC---SCHHHHHHTTTSEETTS--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH---HHHHHH
T ss_pred cc---CChhHHHHhcCCcCCCc--EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCH---HHHHHH
Confidence 11 122233221 2456899 99999999999999999765 444332 23566666665432 112223
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCH
Q 007747 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (591)
Q Consensus 466 ~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~ 543 (591)
++.+++. +. .+++ .+.+........+...+.++. .++...+|++|++ |||+..++.
T Consensus 233 a~~~gl~---------~~----~vle-------ni~~~~~~~~~~~~~~l~~~~-~~l~~~~~~llVI-Ds~t~~~~~ 288 (400)
T 3lda_A 233 AQRFGLD---------PD----DALN-------NVAYARAYNADHQLRLLDAAA-QMMSESRFSLIVV-DSVMALYRT 288 (400)
T ss_dssp HHHTTCC---------HH----HHHH-------TEEEEECCSHHHHHHHHHHHH-HHHHHSCEEEEEE-ETGGGGCC-
T ss_pred HHHcCCC---------hH----hHhh-------cEEEeccCChHHHHHHHHHHH-HHHHhcCCceEEe-cchhhhCch
Confidence 3333321 11 1111 111222222333333333222 2333368888888 999998875
No 147
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.31 E-value=2.7e-08 Score=107.29 Aligned_cols=123 Identities=20% Similarity=0.071 Sum_probs=69.4
Q ss_pred cccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc----ceeeeecchh----hhhhhccccee-
Q 007747 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLR----THARRLQVPIF- 474 (591)
Q Consensus 404 ~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt----~RigaveQl~----~~~~~l~v~l~- 474 (591)
++++++++.+. +++|||+|||||||||+.|++... .+.+.+. ..+|.+.+.. ++.+..++.-.
T Consensus 148 ~~i~lelk~g~--~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a 219 (416)
T 1udx_A 148 RRLRLELMLIA--DVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 219 (416)
T ss_dssp EEEEEEECCSC--SEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCG
T ss_pred eeeeeEEcCCC--EEEEECCCCCcHHHHHHHHHcCCc------cccCcccceecceeeEEEecCcceEEEEeccccccch
Confidence 57899999999 999999999999999999998732 1111110 1244444321 11111111000
Q ss_pred ecCCCCCHHHHHHHHHHHhh----hcCC-CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 475 EKGYEKDPAIVAKEAIQEAT----RNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 475 ~~~~~~d~~~~a~~al~~~~----~~~~-d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
........ .. .+.++.+. ..+. +..+-+++++++++..++++|. ..|.++++ +.+|....
T Consensus 220 ~~~~~L~~-~f-l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~-----~~P~ILVl-----NKlDl~~~ 284 (416)
T 1udx_A 220 SEGKGLGL-EF-LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALL-----RRPSLVAL-----NKVDLLEE 284 (416)
T ss_dssp GGSCCSCH-HH-HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHH-----HSCEEEEE-----ECCTTSCH
T ss_pred hhhhhhhH-HH-HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhh-----cCCEEEEE-----ECCChhhH
Confidence 00000001 00 11111110 0111 2345567899999999999998 78887776 78887654
No 148
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.30 E-value=8e-07 Score=93.24 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=28.8
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHh--hhhcCCcEE
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSV 446 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg--~l~~~~G~V 446 (591)
.+|+++++.++ .|+|||++||||||+|+.|+| +++...|.|
T Consensus 25 ~~l~~i~~~lp-----~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 25 SALPTLWDSLP-----AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp CCC----CCCC-----EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred cccccccccCC-----EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 46777877653 799999999999999999999 555444433
No 149
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.25 E-value=7.5e-07 Score=84.41 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=68.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhc-----------CCcEEEEccccc----ceeeeecc----hhhhhhhcc--cce
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQ-----------HKVSVMMAACDT----FRSGAVEQ----LRTHARRLQ--VPI 473 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~-----------~~G~V~i~~~Dt----~RigaveQ----l~~~~~~l~--v~l 473 (591)
...++|+|+||||||||++.|++...+ ..|.|.+.+.++ +..+..++ ...+.+... +-+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 108 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV 108 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence 357999999999999999999997654 356777766543 11111111 111222211 112
Q ss_pred eecCCCCCHH--HHHHHHHHHhhh-cCCC--cc----hhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH
Q 007747 474 FEKGYEKDPA--IVAKEAIQEATR-NGSD--VV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (591)
Q Consensus 474 ~~~~~~~d~~--~~a~~al~~~~~-~~~d--~v----liDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~ 544 (591)
+.. .+.. ..+...+..+.. ...+ ++ -+|+..........+++|+ .+|.+.++ | ++++|..
T Consensus 109 ~d~---~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~l-d--~Sald~~ 177 (191)
T 1oix_A 109 YDI---AKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNGLSFI-E--TSALDST 177 (191)
T ss_dssp EET---TCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEE-E--CCTTTCT
T ss_pred EEC---cCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEE-E--EeCCCCC
Confidence 211 1111 111111111111 1111 11 1344433334467788888 67887776 6 9999998
Q ss_pred HHHHHHHHHH
Q 007747 545 DQLSKFNQKL 554 (591)
Q Consensus 545 ~q~~~f~~~L 554 (591)
.....|+.+.
T Consensus 178 ~v~~l~~~l~ 187 (191)
T 1oix_A 178 NVEAAFQTIL 187 (191)
T ss_dssp THHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8766664433
No 150
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.24 E-value=2.9e-06 Score=83.91 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=84.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeee----------ecchhhhhh-hcccc--eeec-CCCC
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA----------VEQLRTHAR-RLQVP--IFEK-GYEK 480 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Riga----------veQl~~~~~-~l~v~--l~~~-~~~~ 480 (591)
+.+++++|..||||||+++.|+..+. .+.+|.++..|...... ....+.... .+... +... ....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 56899999999999999999999888 88899999988732110 000110000 00000 0000 0000
Q ss_pred CHHHHHHHHHHHhhhcCCCcchhccchhHHHHH--HHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhh
Q 007747 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNE--PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 481 d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~--~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
.......+.++.+. .+++++++||+|...... .+...+...+ .+ +++++|-++....++.+....+...+....
T Consensus 93 ~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 93 EKFNEYLNKILRLE-KENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp TTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 01112223333332 347999999999875321 1122232222 45 888877888888887664332211211111
Q ss_pred cCCCCccceEEEecccccc
Q 007747 559 SSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 559 ~~~~~~~it~IIlTK~D~i 577 (591)
... ....++++|+|..
T Consensus 169 ~~~---~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 169 RLG---ATTIPALNKVDLL 184 (262)
T ss_dssp HHT---SCEEEEECCGGGC
T ss_pred ccC---CCeEEEEeccccc
Confidence 111 2345899999985
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.23 E-value=2.8e-07 Score=90.22 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=22.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHH-hhhh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA-YWLL 440 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLA-g~l~ 440 (591)
....++||.+.+|+ +++|+|||||||||++++|+ +++.
T Consensus 15 ~~~~~~sl~v~~G~--ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGV--ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCC--EEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCC--EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34578999999999 99999999999999999999 9984
No 152
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.22 E-value=4.8e-07 Score=106.06 Aligned_cols=129 Identities=11% Similarity=0.042 Sum_probs=76.0
Q ss_pred HHHhhhhcCCcEEEEcccccceee--eecchhhhhhhcccceeecCCCCCHH---HHHHHHHHHhhhcC--CCcchhccc
Q 007747 434 KVAYWLLQHKVSVMMAACDTFRSG--AVEQLRTHARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNG--SDVVLVDTA 506 (591)
Q Consensus 434 kLAg~l~~~~G~V~i~~~Dt~Rig--aveQl~~~~~~l~v~l~~~~~~~d~~---~~a~~al~~~~~~~--~d~vliDtS 506 (591)
|....+.|..+.|.|.|.++.... .+.+...+..++.+............ ....+.+..+++.. .+..+..+|
T Consensus 387 C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~~~~LS 466 (916)
T 3pih_A 387 CGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLS 466 (916)
T ss_dssp TCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSBGGGCC
T ss_pred cccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCCcccCC
Confidence 344567888999999998762211 11122222222222110000000000 11122233333322 357788999
Q ss_pred hhHHHHHHHHHHHHhchhcCCCc--EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 507 GRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 507 Gg~~qr~~LaraL~kl~~~~~Pd--lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
||++||+.||++|. .+|+ ++|| ||||+|||+.++...+ +.|..+... +.+.|++|.
T Consensus 467 GGe~QRv~LAraL~-----~~p~~~lllL-DEPT~gLD~~~~~~l~-~~L~~L~~~----G~TvivVtH 524 (916)
T 3pih_A 467 GGESQRIRLATQIG-----SGLTGVIYVL-DEPTIGLHPRDTERLI-KTLKKLRDL----GNTVIVVEH 524 (916)
T ss_dssp HHHHHHHHHHHHHH-----TTCCSCEEEE-ECTTTTCCGGGHHHHH-HHHHHTTTT----TCEEEEECC
T ss_pred HHHHHHHHHHHHHh-----hCCCCcEEEE-ECCccCCCHHHHHHHH-HHHHHHHhc----CCEEEEEeC
Confidence 99999999999999 8776 8888 9999999999975544 777777655 455555554
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.19 E-value=4.2e-06 Score=81.48 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=34.7
Q ss_pred cccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 408 ~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
--+++|+ +++|+||||+||||++..++....+.++.|.+.+.+.
T Consensus 18 gGl~~G~--~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 18 GGIPERN--VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TSEETTC--EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCCc--EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 3466888 9999999999999998888766556677777766543
No 154
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=7.4e-07 Score=85.37 Aligned_cols=42 Identities=17% Similarity=0.016 Sum_probs=24.8
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+.....++++|+|.+.+++ +|+|+||+||||||+.+.|+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------------CCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444567899999999998 99999999999999999999877
No 155
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.15 E-value=1.6e-06 Score=91.01 Aligned_cols=26 Identities=35% Similarity=0.263 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.+..++|+|++|||||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998743
No 156
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.13 E-value=7.2e-07 Score=91.68 Aligned_cols=50 Identities=26% Similarity=0.234 Sum_probs=34.3
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEE---cccccc---------eeeeecchh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDTF---------RSGAVEQLR 463 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i---~~~Dt~---------RigaveQl~ 463 (591)
.|+ +++|+|||||||||||++|+|++.|+.|+|.+ .|.++. ++|+++|.+
T Consensus 168 ~ge--iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p 229 (301)
T 1u0l_A 168 KGK--ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTP 229 (301)
T ss_dssp SSS--EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSC
T ss_pred cCC--eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECc
Confidence 577 99999999999999999999999999999999 776652 267777754
No 157
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.13 E-value=1.3e-06 Score=82.28 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=34.9
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
+.+|+ +++|+|||||||||+++.|++. +..|.|.+.+.+.
T Consensus 6 i~~g~--~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGN--ILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTE--EEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred CCCCe--EEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 45677 9999999999999999999997 6778999987664
No 158
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.10 E-value=7.5e-07 Score=98.42 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=45.3
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.+++++++.+..|+ +++|+|||||||||||+.|++++.|+.|.|.+.+.+-
T Consensus 248 ~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E 298 (511)
T 2oap_1 248 GVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTRE 298 (511)
T ss_dssp HHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCC
T ss_pred HHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCccc
Confidence 45677888888898 8999999999999999999999999999999987653
No 159
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.09 E-value=3.7e-05 Score=83.30 Aligned_cols=183 Identities=12% Similarity=0.136 Sum_probs=98.3
Q ss_pred CCccchHHHHHHHHHHHHHHHcCCC-------CccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-Cc
Q 007747 373 ASFTRISSIVQAAMEEALVRILTPR-------RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KV 444 (591)
Q Consensus 373 ~~~~~~~~~v~~~l~~~L~~il~~~-------~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-~G 444 (591)
..+.++.+.+...+ +.+.+..... .....|+++..-+.+|+ +++|.|++|+||||++..|++.+.+. +.
T Consensus 157 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~tG~~~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~g~ 233 (454)
T 2r6a_A 157 GAFKNIKDILVQTY-DNIEMLHNRDGEITGIPTGFTELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKTNE 233 (454)
T ss_dssp CCCCCHHHHHHHHH-HHHHHHHSCCCCCCSBCCSCHHHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHSSC
T ss_pred ccCccHHHHHHHHH-HHHHHHHhCCCCCCCCCCCcHHHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhCCC
Confidence 34555665555443 3344433211 12456777777788999 99999999999999999999887764 55
Q ss_pred EEEEcccccceeeeecchhhh--hhhcccceee--cC-CCCCHHHHHHHHHHHhhhcCCCcchhcc---chhHHHHHHHH
Q 007747 445 SVMMAACDTFRSGAVEQLRTH--ARRLQVPIFE--KG-YEKDPAIVAKEAIQEATRNGSDVVLVDT---AGRMQDNEPLM 516 (591)
Q Consensus 445 ~V~i~~~Dt~RigaveQl~~~--~~~l~v~l~~--~~-~~~d~~~~a~~al~~~~~~~~d~vliDt---SGg~~qr~~La 516 (591)
.|++.+.+.-. .|+... +...++++.. .+ ........+.+++..+.. ....+.|+ +.++. ...+
T Consensus 234 ~Vl~~s~E~s~----~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~--~~l~i~d~~~~s~~~i--~~~~ 305 (454)
T 2r6a_A 234 NVAIFSLEMSA----QQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSN--AGIYIDDTPSIRVSDI--RAKC 305 (454)
T ss_dssp CEEEEESSSCH----HHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHS--SCEEEECCTTCCHHHH--HHHH
T ss_pred cEEEEECCCCH----HHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHH--HHHH
Confidence 88888765421 232221 2222333211 11 111112233444444332 23444444 33332 2444
Q ss_pred HHHHhchhcCCCcEEEEEecccCCCCH-------HHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 517 RALSKLIYLNNPDLVLFVGEALVGNDA-------VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 517 raL~kl~~~~~PdlILLVDEPt~GlD~-------~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
+.+. ...+|++|++ |+++..... ......+-..|+.++.. .+++.++++.
T Consensus 306 ~~l~---~~~~~~livI-D~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke---~~i~vi~~sq 362 (454)
T 2r6a_A 306 RRLK---QESGLGMIVI-DYLQLIQGSGRSKENRQQEVSEISRSLKALARE---LEVPVIALSQ 362 (454)
T ss_dssp HHHH---TTTCCCEEEE-ECGGGSCCSCC----CHHHHHHHHHHHHHHHHH---HTCCEEEEEC
T ss_pred HHHH---HHcCCCEEEE-ccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hCCeEEEEec
Confidence 5444 3357888888 999876532 11223333455555432 3455566554
No 160
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.08 E-value=3.8e-07 Score=94.50 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=33.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh--------hcCCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL--------LQHKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l--------~~~~G~V~i~~~Dt 453 (591)
+++|+|+|||||||+|+.|+++. .++.|.|.|++.++
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 89999999999999999999986 67889998887665
No 161
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.04 E-value=1.2e-06 Score=94.61 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=36.9
Q ss_pred ccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 411 ~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.+|+ +++|+|||||||||||+.|++++.+..|+|.+.+.++
T Consensus 165 ~~gg--ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHG--IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSE--EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCC--eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 3566 9999999999999999999999999999999987654
No 162
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.01 E-value=3.6e-06 Score=80.58 Aligned_cols=37 Identities=32% Similarity=0.223 Sum_probs=32.0
Q ss_pred ccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 411 ~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.+|+ +++|+|||||||||+++.|++.+ |.+.+.+.+.
T Consensus 27 ~~g~--~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 27 EPTR--HVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp -CCC--EEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 4567 99999999999999999999987 7788887665
No 163
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.01 E-value=4.1e-06 Score=87.31 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=38.8
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhh--cCCcEEEEcccccce
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFR 455 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~--~~~G~V~i~~~Dt~R 455 (591)
.+.|++++|+|||||||||++++|++++. +.+|.|.+.+.|.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 45688999999999999999999999987 467899999988764
No 164
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.01 E-value=3.3e-06 Score=81.48 Aligned_cols=38 Identities=32% Similarity=0.303 Sum_probs=30.7
Q ss_pred ccCCceEEEEEccCCCcHHHHHHHHHhhhhcC---CcEEEEcc
Q 007747 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAA 450 (591)
Q Consensus 411 ~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~---~G~V~i~~ 450 (591)
.+|+ +++|+||||||||||+++|++++.+. .|.|.+.+
T Consensus 20 ~~g~--~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQ--LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCE--EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCe--EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 3566 99999999999999999999999875 34444443
No 165
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.99 E-value=4.8e-06 Score=94.77 Aligned_cols=132 Identities=20% Similarity=0.125 Sum_probs=72.5
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhc--CCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHH
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~--~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~ 487 (591)
+..++ .++|+|++|+|||||++.|++...+ ..|+| +.+..+.. +.++. ..+.+.+......
T Consensus 6 ~~~~~--~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d--~~~~e--~~~giti~~~~~~---------- 68 (665)
T 2dy1_A 6 GAMIR--TVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTD--YTPEA--KLHRTTVRTGVAP---------- 68 (665)
T ss_dssp CCCEE--EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSC--CSHHH--HHTTSCCSCEEEE----------
T ss_pred cCCCc--EEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccccc--CCHHH--HhcCCeEEecceE----------
Confidence 34556 9999999999999999999987654 45665 22222110 00000 0011111000000
Q ss_pred HHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccce
Q 007747 488 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567 (591)
Q Consensus 488 ~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it 567 (591)
+....+...++||+|.........+++. ..+..++|-+|+.|+++... . .+..+...+ ..-
T Consensus 69 -----~~~~~~~~nliDTpG~~~f~~~~~~~l~------~ad~~ilVvD~~~g~~~qt~-~----~~~~~~~~~---ip~ 129 (665)
T 2dy1_A 69 -----LLFRGHRVFLLDAPGYGDFVGEIRGALE------AADAALVAVSAEAGVQVGTE-R----AWTVAERLG---LPR 129 (665)
T ss_dssp -----EEETTEEEEEEECCCSGGGHHHHHHHHH------HCSEEEEEEETTTCSCHHHH-H----HHHHHHHTT---CCE
T ss_pred -----EeeCCEEEEEEeCCCccchHHHHHHHHh------hcCcEEEEEcCCcccchhHH-H----HHHHHHHcc---CCE
Confidence 0001345668899987665544555554 34555555559999997654 2 233333222 234
Q ss_pred EEEecccccc
Q 007747 568 GILLTKFDTI 577 (591)
Q Consensus 568 ~IIlTK~D~i 577 (591)
.++++|+|..
T Consensus 130 ilv~NKiD~~ 139 (665)
T 2dy1_A 130 MVVVTKLDKG 139 (665)
T ss_dssp EEEEECGGGC
T ss_pred EEEecCCchh
Confidence 5789999974
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.98 E-value=5.3e-06 Score=78.66 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhh-----cC------CcEEEEcccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLL-----QH------KVSVMMAACD 452 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~-----~~------~G~V~i~~~D 452 (591)
+.++|+|+||||||||++.|++... |+ .|.|.+.+.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 4789999999999999999998642 32 3567776643
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.98 E-value=3.2e-06 Score=95.35 Aligned_cols=107 Identities=23% Similarity=0.224 Sum_probs=54.1
Q ss_pred hHHHHHHHhccCccCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc-
Q 007747 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL- 394 (591)
Q Consensus 316 ~~~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il- 394 (591)
.+..-|+.+.+ +++.+++.++....-.| +.+.+.++..+.++++..+.+....+.+.+.+.+.++-
T Consensus 40 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (611)
T 3izq_1 40 TLKAQLQDYQG---WDNLSLKLALFDNNFDL----------ESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISI 106 (611)
T ss_dssp THHHHHHHHHC---CCSSHHHHHHHHTTTCS----------SHHHHHHHHTTCSSSCC----------------------
T ss_pred HHHHHHHHhcC---cchhHHHHHHHHhhccH----------HHHHHHHHHHhccccccCCCChHHHHHHHHHHHHHhhcc
Confidence 35566666665 78887777665554333 67788888888888888777777677777777776651
Q ss_pred -------------------------------------------CCCCccccccccccccccCCceEEEEEccCCCcHHHH
Q 007747 395 -------------------------------------------TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTN 431 (591)
Q Consensus 395 -------------------------------------------~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTl 431 (591)
.+....++...+. ....+..++|||..|+|||||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~k~~lkV~ivG~~n~GKSTL 183 (611)
T 3izq_1 107 SQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVK---SALPHLSFVVLGHVDAGKSTL 183 (611)
T ss_dssp ------------------------------------------------------CC---CCCCCCEEEEECCSSSCHHHH
T ss_pred cccccchhcccccccccccccccccchhhhhhhhhhhhccccCCCCcchhHHHHHh---ccCCceEEEEEECCCCCHHHH
Confidence 0111111111111 122345799999999999999
Q ss_pred HHHHHhh
Q 007747 432 LAKVAYW 438 (591)
Q Consensus 432 L~kLAg~ 438 (591)
++.|.+.
T Consensus 184 in~Ll~~ 190 (611)
T 3izq_1 184 MGRLLYD 190 (611)
T ss_dssp HHHHHSC
T ss_pred HHHHHHh
Confidence 9999754
No 168
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.98 E-value=2.8e-06 Score=81.75 Aligned_cols=27 Identities=37% Similarity=0.335 Sum_probs=23.6
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
+|+ +++|+|||||||||++++|++++.
T Consensus 3 ~g~--~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPR--PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --C--CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHhhCc
Confidence 566 899999999999999999999885
No 169
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.96 E-value=1.9e-06 Score=81.64 Aligned_cols=28 Identities=32% Similarity=0.259 Sum_probs=24.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCC
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHK 443 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~ 443 (591)
.+++|+|||||||||++++|++++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 3899999999999999999999987433
No 170
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.95 E-value=1.8e-05 Score=77.62 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhhhcCC
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHK 443 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l~~~~ 443 (591)
.+..++|+|++|||||||++.|++......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~ 57 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHS 57 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCcc
Confidence 345799999999999999999997554433
No 171
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.94 E-value=5.5e-06 Score=79.58 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=37.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R 455 (591)
+.+++|+|++||||||+++.|++++.+.+|.|.+.+.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 34999999999999999999999999999999998888753
No 172
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.93 E-value=1.7e-06 Score=89.60 Aligned_cols=43 Identities=30% Similarity=0.282 Sum_probs=24.7
Q ss_pred ccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEE---ccccc
Q 007747 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDT 453 (591)
Q Consensus 409 ~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i---~~~Dt 453 (591)
.+.+|+ +++|+|||||||||||+.|+|.+.+..|.|.+ .|.++
T Consensus 169 ~~~~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 169 PHFQDK--TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp GGGTTS--EEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred hhcCCC--EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence 345788 99999999999999999999999999999998 56555
No 173
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.92 E-value=1.7e-05 Score=83.36 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=34.4
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D 452 (591)
+++|+ ++.|.||+|+||||++..++......++.|.+...+
T Consensus 58 l~~G~--iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 58 LPRGR--VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45788 999999999999999999997777777777776554
No 174
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.91 E-value=4.2e-06 Score=84.90 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=42.7
Q ss_pred CCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 396 ~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
|.....+++++++.++.| ++|+||||+||||+++.||+.+.+ +.|.+.+.++
T Consensus 29 ~~~~~~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 29 PVRNPDQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp HHHSHHHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred HhhCHHHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 334456888898887665 899999999999999999998765 6788888776
No 175
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.90 E-value=5.1e-07 Score=89.69 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=29.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
+++|+|||||||||+|.+|+|++.|+.|.|.+.+.++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 8999999999999999999999999999998877654
No 176
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.89 E-value=3.2e-05 Score=73.21 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=82.4
Q ss_pred eEEEEEcc-CCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhh--hhcccceeecCCCCCHHHHHHHHHHH
Q 007747 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA--RRLQVPIFEKGYEKDPAIVAKEAIQE 492 (591)
Q Consensus 416 ~ii~LvGp-NGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~--~~l~v~l~~~~~~~d~~~~a~~al~~ 492 (591)
.+|+|.++ -|+||||+...||..+...+.+|++..+|.... +..+. ...++++..... ....+.++.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~ 71 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS-----LTNWSKAGKAAFDVFTAAS-----EKDVYGIRK 71 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH-----HHHHHTTSCCSSEEEECCS-----HHHHHTHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC-----HHHHHhcCCCCCcEEecCc-----HHHHHHHHH
Confidence 37788854 669999999999998888888999999995321 11111 111334433221 233444554
Q ss_pred hhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 493 ATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 493 ~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
+. ..+|++++|++++... ....+. ...|.+++|-+|...- .. ...+.+.+..+........+ ++|++
T Consensus 72 l~-~~yD~viiD~~~~~~~---~~~~~l-----~~ad~viiv~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~-~vv~N 138 (206)
T 4dzz_A 72 DL-ADYDFAIVDGAGSLSV---ITSAAV-----MVSDLVIIPVTPSPLD--FS-AAGSVVTVLEAQAYSRKVEA-RFLIT 138 (206)
T ss_dssp HT-TTSSEEEEECCSSSSH---HHHHHH-----HHCSEEEEEECSCTTT--HH-HHHHHHHHHTTSCGGGCCEE-EEEEC
T ss_pred hc-CCCCEEEEECCCCCCH---HHHHHH-----HHCCEEEEEecCCHHH--HH-HHHHHHHHHHHHHhCCCCcE-EEEEe
Confidence 43 3589999999988732 222233 2467888877775543 22 23333444443321222344 89999
Q ss_pred cccc
Q 007747 573 KFDT 576 (591)
Q Consensus 573 K~D~ 576 (591)
+++.
T Consensus 139 ~~~~ 142 (206)
T 4dzz_A 139 RKIE 142 (206)
T ss_dssp SBCT
T ss_pred ccCC
Confidence 9985
No 177
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.87 E-value=3.9e-06 Score=80.35 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=39.3
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEE--EEccccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV--MMAACDT 453 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V--~i~~~Dt 453 (591)
+...+..++...+|+ +++|+||+||||||+++.|++.+. ..|.+ .+.+.+.
T Consensus 12 ~~~~~~~~~~~~~g~--~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGC--VIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCE--EEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCe--EEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 334445555556677 999999999999999999999987 56766 7766554
No 178
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.81 E-value=8.4e-06 Score=76.86 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=30.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
+++|+|||||||||+++.|++ +.+|.|.+.+.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 899999999999999999987 5678898887665
No 179
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.81 E-value=2.6e-05 Score=91.72 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=57.3
Q ss_pred CCcchhccchhHHHHHHHHHHHHhchhcCCC--cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 498 ~d~vliDtSGg~~qr~~LaraL~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
.+..+..+|||++||+.||++|. .+| +++|| ||||+|||+.+....+ +.|+.+...+.++.+-.|-+.-++
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~-----~~~~~~llIL-DEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIvVeHdl~~i~ 587 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIG-----SGLVGVLYVL-DEPSIGLHQRDNRRLI-ETLTRLRDLGNTLIVVEHDEDTIE 587 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHT-----TCCCSCEEEE-ECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEECCCHHHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHHh-----hCCCCcEEEE-eCcccCCCHHHHHHHH-HHHHHHHHcCCEEEEECCCHHHHH
Confidence 46778899999999999999999 774 77777 9999999999975544 788888776444433333333444
Q ss_pred ccCCcEEEE
Q 007747 576 TIDDKHYQW 584 (591)
Q Consensus 576 ~i~d~vGal 584 (591)
.+|++-.|
T Consensus 588 -~ADrIi~L 595 (993)
T 2ygr_A 588 -HADWIVDI 595 (993)
T ss_dssp -TCSEEEEE
T ss_pred -hCCEEEEe
Confidence 35655443
No 180
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.78 E-value=4.8e-05 Score=82.36 Aligned_cols=114 Identities=25% Similarity=0.276 Sum_probs=60.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
.++|||.+|||||||++.|++- + .+.+.+....... ..+.. +...
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~------~----------~~~v~~~~g~t~~---~~~~~----------------~~~~ 69 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE------R----------ISIVEDTPGVTRD---RIYSS----------------AEWL 69 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE------E----------EC--------------CEEEE----------------CTTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC------C----------CcccCCCCCccee---EEEEE----------------EEEC
Confidence 8999999999999999999762 1 1112211110000 00000 0112
Q ss_pred CCCcchhccchh-------HHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEE
Q 007747 497 GSDVVLVDTAGR-------MQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 497 ~~d~vliDtSGg-------~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (591)
+....++||+|- +.+-..++.... .++|.+|||-++..++...+. ..+..+.... ..-.+
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~-----~~ad~il~VvD~~~~~~~~d~-----~l~~~l~~~~---~pvil 136 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM-----DEADVIIFMVNGREGVTAADE-----EVAKILYRTK---KPVVL 136 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHH-----HHCSEEEEEEESSSCSCHHHH-----HHHHHHTTCC---SCEEE
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhH-----hhCCEEEEEEeCCCCCChHHH-----HHHHHHHHcC---CCEEE
Confidence 446788999983 222222333333 478999888888888887664 2223333322 23458
Q ss_pred EeccccccC
Q 007747 570 LLTKFDTID 578 (591)
Q Consensus 570 IlTK~D~i~ 578 (591)
+++|+|...
T Consensus 137 V~NK~D~~~ 145 (456)
T 4dcu_A 137 AVNKLDNTE 145 (456)
T ss_dssp EEECC----
T ss_pred EEECccchh
Confidence 899999753
No 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.77 E-value=1.1e-05 Score=76.48 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=28.0
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G 444 (591)
+.+|+ +++|+|||||||||+++.|++++.|..|
T Consensus 3 i~~g~--~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 3 NEKGL--LIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp -CCCC--EEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCC--EEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 45777 9999999999999999999999866433
No 182
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.77 E-value=2.9e-05 Score=72.56 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|+.||||||+++.|++-
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999874
No 183
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.75 E-value=1.3e-05 Score=75.68 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=20.1
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHh
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+++++++..+.. .++|+|++||||||+++.+++
T Consensus 13 ~l~~~~~~~~~~---ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG---KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C---EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc---EEEEECCCCCCHHHHHHHHhc
Confidence 455666654443 689999999999999999986
No 184
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.75 E-value=4.6e-05 Score=73.07 Aligned_cols=134 Identities=14% Similarity=0.180 Sum_probs=71.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeec---C-CCCCHHHHHHHHH
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK---G-YEKDPAIVAKEAI 490 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~---~-~~~d~~~~a~~al 490 (591)
+.+++|+|+.||||||+++.|++.+... .++.+...|+.. . +.. ......++.+... + +.... ....+++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~-~-~d~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS-K-ADY--ERVRRFGIKAEAISTGKECHLDA-HMIYHRL 103 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC-H-HHH--HHHHTTTCEEEECCCTTCSSCCH-HHHHTTG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC-c-hhH--HHHHhCCCcEEEecCCceeeccc-HHHHHHH
Confidence 3489999999999999999999876544 677777777642 1 110 1111112221111 0 11111 1222222
Q ss_pred HHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEE
Q 007747 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (591)
Q Consensus 491 ~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (591)
. ...+++.+++||+|...... ... ..++.+++|-+++.+.+.... +...+ . ....++
T Consensus 104 ~--~~~~~d~iiidt~G~~~~~~--------~~~-~~~~~~i~vvd~~~~~~~~~~---~~~~~---~------~~~iiv 160 (221)
T 2wsm_A 104 K--KFSDCDLLLIENVGNLICPV--------DFD-LGENYRVVMVSVTEGDDVVEK---HPEIF---R------VADLIV 160 (221)
T ss_dssp G--GGTTCSEEEEEEEEBSSGGG--------GCC-CSCSEEEEEEEGGGCTTHHHH---CHHHH---H------TCSEEE
T ss_pred H--hcCCCCEEEEeCCCCCCCCc--------hhc-cccCcEEEEEeCCCcchhhhh---hhhhh---h------cCCEEE
Confidence 2 33467999999998411000 001 234556666667777543221 11111 1 235699
Q ss_pred ecccccc
Q 007747 571 LTKFDTI 577 (591)
Q Consensus 571 lTK~D~i 577 (591)
++|+|..
T Consensus 161 ~NK~Dl~ 167 (221)
T 2wsm_A 161 INKVALA 167 (221)
T ss_dssp EECGGGH
T ss_pred EecccCC
Confidence 9999974
No 185
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.74 E-value=7.8e-05 Score=70.84 Aligned_cols=79 Identities=18% Similarity=0.105 Sum_probs=53.2
Q ss_pred cchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc---c
Q 007747 500 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD---T 576 (591)
Q Consensus 500 ~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D---~ 576 (591)
..+..+|||++|++.|+++|+. ....+|+++|| |||++|||+.... .+.+.|..+... ...|++|.-+ .
T Consensus 60 ~~~~~LSgGekqr~ala~~la~-~~~~~~~~llL-DEp~a~LD~~~~~-~~~~~l~~~~~~-----~~~ivith~~~~~~ 131 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAI-QKFKPAPFYLF-DEIDAHLDDANVK-RVADLIKESSKE-----SQFIVITLRDVMMA 131 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHH-HHHSCCSEEEE-ESTTTTCCHHHHH-HHHHHHHHHTTT-----SEEEEECSCHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHh-cccCCCCEEEE-CCCccCCCHHHHH-HHHHHHHHhccC-----CEEEEEEecHHHHH
Confidence 4466789999999999999971 11245688888 9999999999874 444677766543 2345555332 2
Q ss_pred cCCcEEEEEe
Q 007747 577 IDDKHYQWSM 586 (591)
Q Consensus 577 i~d~vGals~ 586 (591)
.+|++..+.|
T Consensus 132 ~ad~i~~v~~ 141 (173)
T 3kta_B 132 NADKIIGVSM 141 (173)
T ss_dssp TCSEEEEEEE
T ss_pred hCCEEEEEEe
Confidence 4555544444
No 186
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.73 E-value=2.9e-05 Score=91.06 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=55.8
Q ss_pred CCcchhccchhHHHHHHHHHHHHhchhcCCC--cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 498 ~d~vliDtSGg~~qr~~LaraL~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
.+..+-.+|||++||+.||++|. .+| +++|| ||||+|||+.+....+ +.|+.+...+.++.+-.|-+.-++
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~-----~~~~~~llIL-DEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIvVeHdl~~i~ 570 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIG-----SRLTGVLYVL-DEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVVEHDEDTML 570 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHT-----TCCCSCEEEE-ECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEEECCCHHHHH
T ss_pred cCCccccCCHHHHHHHHHHHHHh-----hCCCCCEEEE-eCcccCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHH
Confidence 36778899999999999999999 774 77777 9999999999875444 788888765443333333322343
Q ss_pred ccCCcEEE
Q 007747 576 TIDDKHYQ 583 (591)
Q Consensus 576 ~i~d~vGa 583 (591)
.+|++-.
T Consensus 571 -~ADrIi~ 577 (972)
T 2r6f_A 571 -AADYLID 577 (972)
T ss_dssp -SCSEEEE
T ss_pred -hCCEEEE
Confidence 2555443
No 187
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.73 E-value=1.8e-05 Score=74.04 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=30.9
Q ss_pred cccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc
Q 007747 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444 (591)
Q Consensus 404 ~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G 444 (591)
+++++.+.+| +++|+|||||||||++..|++++.+..+
T Consensus 18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 4566666554 8999999999999999999998876544
No 188
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=97.73 E-value=4.1e-05 Score=69.61 Aligned_cols=77 Identities=19% Similarity=0.447 Sum_probs=54.9
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccCC--------Cceeec----C----CCCceeeeeEee
Q 007747 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL--------ASFNYD----S----AGAAYTLKWTFH 64 (591)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~v~leer~~~--------~~~~~~----~----~~~~~~lkw~~~ 64 (591)
|+|+|.|||..|=||+.+.--.-......||++|.+.|..--+-+ ..|.|. + .-.+|+..|...
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 999999999999999984322334566789999999987532211 112221 0 012899999999
Q ss_pred cccceEEEEEecc
Q 007747 65 NELGLVFVAVYQR 77 (591)
Q Consensus 65 ne~~lvfv~vyq~ 77 (591)
+...|+||+-|-.
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 9999999999965
No 189
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.72 E-value=0.00013 Score=74.44 Aligned_cols=148 Identities=17% Similarity=0.233 Sum_probs=86.9
Q ss_pred ceEEEEEccC-CCcHHHHHHHHHhhhhcCCcEEEEcccccceeeee--cch---hhhhhh----------------cccc
Q 007747 415 PYVVVFVGVN-GVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV--EQL---RTHARR----------------LQVP 472 (591)
Q Consensus 415 p~ii~LvGpN-GsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Rigav--eQl---~~~~~~----------------l~v~ 472 (591)
+++|+|.|+. |+||||+..-||..+...+.+|+++.+|..+...- +.+ ..+.+. -++.
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l~ 171 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFD 171 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCEE
Confidence 4499999875 89999999999998888888999999998542110 000 001100 1222
Q ss_pred eeecCC-CCCHHH-----HHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 473 IFEKGY-EKDPAI-----VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 473 l~~~~~-~~d~~~-----~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+...+. ..++.+ ...+.++.+. ..||++++|++....- .-+..+. ...|.+|+|-+|...- ...
T Consensus 172 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~--~da~~l~-----~~aD~vllVv~~~~~~--~~~ 241 (286)
T 3la6_A 172 LIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAV--TDAAIVG-----RHVGTTLMVARYAVNT--LKE 241 (286)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTC--THHHHHT-----TTCSEEEEEEETTTSB--HHH
T ss_pred EEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcch--HHHHHHH-----HHCCeEEEEEeCCCCc--HHH
Confidence 322222 123332 2344455443 3589999999876532 1233455 5678888877764321 222
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
. ...+..+...+ ..+.++|+++++.-
T Consensus 242 ~---~~~~~~l~~~g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 242 V---ETSLSRFEQNG--IPVKGVILNSIFRR 267 (286)
T ss_dssp H---HHHHHHHHHTT--CCCCEEEEEEECCC
T ss_pred H---HHHHHHHHhCC--CCEEEEEEcCcccc
Confidence 2 23344444332 46788999999863
No 190
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.71 E-value=5e-05 Score=77.86 Aligned_cols=23 Identities=39% Similarity=0.342 Sum_probs=21.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.+++|+|++|||||||++.|+|.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 38999999999999999999985
No 191
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.71 E-value=9.5e-05 Score=70.58 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.+..++|+|+.||||||+++.|++-.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998743
No 192
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.70 E-value=1.2e-05 Score=76.56 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=26.3
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHh
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.+++++++..+. ..++|+|++||||||+++.+++
T Consensus 14 ~~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhc
Confidence 355666665543 3689999999999999999864
No 193
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.69 E-value=1.4e-05 Score=79.11 Aligned_cols=48 Identities=23% Similarity=0.174 Sum_probs=39.2
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
..+++++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.+.+.
T Consensus 38 ~~~~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 38 PSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp HHHHHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 35678888877655 88999999999999999999875 67788877654
No 194
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.67 E-value=1.5e-05 Score=75.04 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.1
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhc-CCcEEEE
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMM 448 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-~~G~V~i 448 (591)
.|+ +++|+|||||||||++++|++.+.+ ..+.|..
T Consensus 4 ~g~--~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRK--TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCC--EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 467 9999999999999999999998753 3344443
No 195
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.67 E-value=8.1e-05 Score=71.23 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
...++|+|..|||||||++.|++-
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 347899999999999999999764
No 196
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.66 E-value=1.5e-05 Score=80.10 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=38.5
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.+++++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.+.+.
T Consensus 63 ~~l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~ 109 (278)
T 1iy2_A 63 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 109 (278)
T ss_dssp HHHHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence 4677888876554 88999999999999999999875 67788877654
No 197
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.66 E-value=0.00015 Score=67.55 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.+..++|+|+.||||||+++.|++-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999863
No 198
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.65 E-value=0.00026 Score=68.86 Aligned_cols=145 Identities=19% Similarity=0.114 Sum_probs=85.6
Q ss_pred eEEEEEcc-CCCcHHHHHHHHHhhhhcC-CcEEEEcccccceeee------ecchhhhhhh-------------------
Q 007747 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGA------VEQLRTHARR------------------- 468 (591)
Q Consensus 416 ~ii~LvGp-NGsGKTTlL~kLAg~l~~~-~G~V~i~~~Dt~Riga------veQl~~~~~~------------------- 468 (591)
.+|+|++. -|+||||+...||..+... +.+|+++.+|..+... ......+.+.
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQHI 84 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSEEE
T ss_pred eEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhEec
Confidence 48888876 4799999999999988877 8899999999752111 1100011000
Q ss_pred -cccceeecCCCCCH-------HHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC
Q 007747 469 -LQVPIFEKGYEKDP-------AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (591)
Q Consensus 469 -l~v~l~~~~~~~d~-------~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G 540 (591)
-++.+... +... .....+.++.+. ..||++++|++++... ....+. ...|.+++|-+|.
T Consensus 85 ~~~l~~l~~--~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~---~~~~~l-----~~ad~viiv~~~~-- 151 (245)
T 3ea0_A 85 SPSLDLIPS--PATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDH---VGVWVL-----EHLDELCIVTTPS-- 151 (245)
T ss_dssp ETTEEEECC--CSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCT---THHHHG-----GGCSEEEEEECSS--
T ss_pred CCCeEEEcC--CCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCch---HHHHHH-----HHCCEEEEEecCc--
Confidence 02222221 1111 123344555443 3689999999987632 333344 4678888877764
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
... .......+..+...+.....-++|+++++.
T Consensus 152 --~~~-~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 152 --LQS-LRRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp --HHH-HHHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred --HHH-HHHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 222 233334455554444345567899999986
No 199
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.65 E-value=1.7e-05 Score=77.79 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=32.9
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
..+|+ +++|+|+|||||||+++.|+++ +|+|.+.+.+.
T Consensus 17 ~~~g~--~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 17 GTQPF--TVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TCCCE--EEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCce--EEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 34676 9999999999999999999998 78888887664
No 200
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.63 E-value=6e-05 Score=87.72 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=56.4
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCCc--EEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~Pd--lILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
+..+..+|||++|++.||++|. .+|+ ++|| ||||++||+.+... +.+.|..+...+.++.+-.|-+.-++
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~-----~~p~~~llIL-DEPT~~Ld~~~~~~-L~~~l~~L~~~G~TVIvVeHdl~~l~- 445 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLY-----SNLFGVVYVL-DEPSAGLHPADTEA-LLSALENLKRGGNSLFVVEHDLDVIR- 445 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTT-----TCCCSCEEEE-ECTTTTCCGGGHHH-HHHHHHHHHTTTCEEEEECCCHHHHT-
T ss_pred cCCcCcCCHHHHHHHHHHHHHh-----hCCCCeEEEe-eCccccCCHHHHHH-HHHHHHHHHHcCCEEEEEcCCHHHHH-
Confidence 6778899999999999999999 8885 7777 99999999998754 44788888776444433333333343
Q ss_pred cCCcEEEE
Q 007747 577 IDDKHYQW 584 (591)
Q Consensus 577 i~d~vGal 584 (591)
.+|++-.|
T Consensus 446 ~aD~ii~l 453 (842)
T 2vf7_A 446 RADWLVDV 453 (842)
T ss_dssp TCSEEEEE
T ss_pred hCCEEEEe
Confidence 25554433
No 201
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.62 E-value=0.00011 Score=75.39 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=66.1
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~ 491 (591)
++.++.++|+|..|||||||++.|.|.-. .+.... .|. +.....+ .+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~------~i~s~~-------~~t-T~~~~~~--~~~~~-------------- 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKV------SIISPK-------AGT-TRMRVLG--VKNIP-------------- 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCC------SCCCSS-------SCC-CCSCEEE--EEEET--------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCc------cccCCC-------CCc-eeeEEEE--EEecC--------------
Confidence 34566999999999999999999986321 110000 000 0000000 00000
Q ss_pred HhhhcCCCcchhccchhHHH---------HHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007747 492 EATRNGSDVVLVDTAGRMQD---------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (591)
Q Consensus 492 ~~~~~~~d~vliDtSGg~~q---------r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (591)
.+..++++||+|-... ....+.... .++|.+|+|-+++.+....+. ..+ +..+...
T Consensus 57 ----~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l-----~~aD~il~VvD~~~~~~~~~~-~~~---~~~l~~~-- 121 (308)
T 3iev_A 57 ----NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL-----EEADVILFMIDATEGWRPRDE-EIY---QNFIKPL-- 121 (308)
T ss_dssp ----TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH-----HHCSEEEEEEETTTBSCHHHH-HHH---HHHTGGG--
T ss_pred ----CCCeEEEEECcCCCccccchhHHHHHHHHHHHHh-----hcCCEEEEEEeCCCCCCchhH-HHH---HHHHHhc--
Confidence 0345778899886321 111222222 478999988889888776553 221 3333332
Q ss_pred CccceEEEecccccc
Q 007747 563 PQLIDGILLTKFDTI 577 (591)
Q Consensus 563 ~~~it~IIlTK~D~i 577 (591)
.....+++||+|.+
T Consensus 122 -~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 122 -NKPVIVVINKIDKI 135 (308)
T ss_dssp -CCCEEEEEECGGGS
T ss_pred -CCCEEEEEECccCC
Confidence 13456899999986
No 202
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.62 E-value=0.00011 Score=81.03 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=36.5
Q ss_pred cccccccCCceEEEEEccCCCcHHHHHHHHHh--hhhcCCcEEEEcccccce
Q 007747 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSVMMAACDTFR 455 (591)
Q Consensus 406 is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg--~l~~~~G~V~i~~~Dt~R 455 (591)
+.+.+..+. .++|+|.+||||||+|+.|.. ++..+.+.|.+...|...
T Consensus 160 v~ldL~~~p--HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 160 VVADLAKMP--HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEEGGGSC--SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEEcccCc--eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 445555665 789999999999999999875 334456788888888654
No 203
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.60 E-value=0.00015 Score=65.06 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=39.5
Q ss_pred CcchhccchhHHH------HHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 499 DVVLVDTAGRMQD------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 499 d~vliDtSGg~~q------r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
...++||+|.... ......... ...+.+++|-+++.+...... .+.+.+.. . ...-.+++|
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-----~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~---~---~~p~ilv~n 116 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRAL-----EDAEVVLFAVDGRAELTQADY--EVAEYLRR---K---GKPVILVAT 116 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHT-----TTCSEEEEEEESSSCCCHHHH--HHHHHHHH---H---TCCEEEEEE
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHH-----HhCCEEEEEEECCCcccHhHH--HHHHHHHh---c---CCCEEEEEE
Confidence 4567888886541 122223333 578888888888887765442 22233322 1 123469999
Q ss_pred cccccC
Q 007747 573 KFDTID 578 (591)
Q Consensus 573 K~D~i~ 578 (591)
|+|...
T Consensus 117 K~Dl~~ 122 (161)
T 2dyk_A 117 KVDDPK 122 (161)
T ss_dssp CCCSGG
T ss_pred Cccccc
Confidence 999854
No 204
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.57 E-value=0.0001 Score=74.93 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.++|+|..||||||+++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999864
No 205
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.55 E-value=2e-05 Score=79.09 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=35.5
Q ss_pred Ccccccccccccccc---CCceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 398 RSIDILRDVHAAKEQ---RKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 398 ~~~~iL~~is~~i~~---Gep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
....+|++++|.+.+ |+ +++|+|++||||||+.+.|++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence 345689999999999 99 99999999999999999999866
No 206
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.54 E-value=0.00044 Score=64.58 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=63.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~ 495 (591)
.-++|+|+.|||||||++.+++-....... .-.+.+.+ ...... ..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~----------------~~~~~~-----------------~~ 69 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFV-STVGIDFK----------------VKTVYR-----------------HE 69 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEE-EEETTTEE----------------EEEEEE-----------------TT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccC-CCeeeEEE----------------EEEEEE-----------------CC
Confidence 479999999999999999998643221111 11111110 000000 01
Q ss_pred cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 496 ~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
..+.+.++||+|....+. +..... .+.+.+|+|-+++... .......+...+.... .....-.++++|+|
T Consensus 70 ~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~---~~~~piilv~nK~D 139 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRT-ITTAYY-----RGAMGFILMYDITNEE-SFNAVQDWATQIKTYS---WDNAQVILVGNKCD 139 (191)
T ss_dssp TTEEEEEECHHHHHHCHH-HHHHHH-----TTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHS---CTTCEEEEEEECTT
T ss_pred EEEEEEEEeCCChHHHHH-HHHHHH-----ccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhc---CCCCCEEEEEECCC
Confidence 123467889999665443 444444 5788888877665421 1122222223333222 12234568899999
Q ss_pred ccC
Q 007747 576 TID 578 (591)
Q Consensus 576 ~i~ 578 (591)
...
T Consensus 140 l~~ 142 (191)
T 3dz8_A 140 MEE 142 (191)
T ss_dssp CGG
T ss_pred Ccc
Confidence 743
No 207
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.54 E-value=0.00025 Score=65.62 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++|+|+.||||||+++.|.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999999764
No 208
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.52 E-value=9.5e-06 Score=84.24 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=29.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhh----hcCCcEEEEcccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWL----LQHKVSVMMAACD 452 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l----~~~~G~V~i~~~D 452 (591)
..++|+||||+||||+++.||+.+ .+..|.+...+.|
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 479999999999999999999988 5556666554444
No 209
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.52 E-value=1.2e-05 Score=80.16 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.4
Q ss_pred ccCCceEEEEEccCCCcHHHHHHHHH---hhhhcCCcEEE
Q 007747 411 EQRKPYVVVFVGVNGVGKSTNLAKVA---YWLLQHKVSVM 447 (591)
Q Consensus 411 ~~Gep~ii~LvGpNGsGKTTlL~kLA---g~l~~~~G~V~ 447 (591)
.+|. +|+|+|||||||||+++.|+ |+..++.|.|.
T Consensus 25 ~~g~--~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAP--VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSC--EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 4567 99999999999999999999 88888888877
No 210
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.51 E-value=0.00024 Score=74.90 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=34.3
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~ 451 (591)
+++|+ ++.|+||+|+|||||+..|+..+.+.+|+|++.+.
T Consensus 58 i~~G~--i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 58 YPRGR--IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp EETTE--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCc--EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45777 99999999999999999999998888888766543
No 211
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.51 E-value=4.9e-05 Score=73.33 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=25.7
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhc
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~ 441 (591)
+|+ +++|+|||||||||+++.|++.+.+
T Consensus 7 ~g~--~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGL--LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCC--EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCc--EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 567 9999999999999999999998865
No 212
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.51 E-value=0.00068 Score=68.47 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=83.8
Q ss_pred ceEEEEEcc-CCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeee--cch---hhhhhh----------------cccc
Q 007747 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV--EQL---RTHARR----------------LQVP 472 (591)
Q Consensus 415 p~ii~LvGp-NGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Rigav--eQl---~~~~~~----------------l~v~ 472 (591)
+++++|.|+ .|+||||+...||..+...+.+|+++.+|..+.... +.+ ..+.+. -++.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l~ 161 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDLD 161 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCEE
Confidence 449999987 589999999999998888888999999997542111 000 001000 1222
Q ss_pred eeecCC-CCCHHH-----HHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 473 IFEKGY-EKDPAI-----VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 473 l~~~~~-~~d~~~-----~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+...+. ..++.+ ...+.++.+. ..+|++++|+++.... .-+..+. ...|.+|+|-+|... ....
T Consensus 162 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~--~d~~~l~-----~~aD~vilVv~~~~~--~~~~ 231 (271)
T 3bfv_A 162 VLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTV--TDAQLFS-----KFTGNVVYVVNSENN--NKDE 231 (271)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTC--SHHHHHH-----HHHCEEEEEEETTSC--CHHH
T ss_pred EEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchH--HHHHHHH-----HHCCEEEEEEeCCCC--cHHH
Confidence 322221 123332 2334455443 4589999999886532 1122232 233667777766432 2222
Q ss_pred HHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
.. ..+..+... ...+-++|++++|.-
T Consensus 232 ~~---~~~~~l~~~--~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 232 VK---KGKELIEAT--GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HH---HHHHHHHTT--TCEEEEEEEEEECC-
T ss_pred HH---HHHHHHHhC--CCCEEEEEEeCCcCC
Confidence 22 334444332 245678999999863
No 213
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.50 E-value=6.6e-05 Score=69.64 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=30.0
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
+|+ +++|+|+|||||||+++.|++.+ |.+.+.+-+.
T Consensus 7 ~g~--~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 7 DHH--IYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TSE--EEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCc--EEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 455 99999999999999999999876 6677766554
No 214
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.50 E-value=0.00021 Score=64.13 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.-++|+|+.||||||+++.+++-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.48 E-value=0.00022 Score=78.05 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=25.9
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.+.++.+.++. -+.|+||+|+||||+++.|++.+
T Consensus 40 ~~~~~g~~~p~----gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPK----GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCS----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCC----eEEEECCCCCCHHHHHHHHHHHc
Confidence 44555554433 47899999999999999999854
No 216
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.46 E-value=8e-05 Score=69.50 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=63.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~ 493 (591)
++..++|+|+.|||||||++.|++-....... .+ + ++.+...... .
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~------~t--~-------------~~~~~~~~~~-------------~ 64 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE------AT--I-------------GVDFRERAVD-------------I 64 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC------CC--C-------------SCCEEEEEEE-------------E
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC------CC--c-------------ceEEEEEEEE-------------E
Confidence 34579999999999999999998632111000 00 0 0000000000 0
Q ss_pred hhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 494 ~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
....+.+.++||+|..+.+..+..... .+.+.+|+|-+++.... ......+...+..... .....-.+++||
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~-----~~~d~iilv~D~~~~~s-~~~~~~~~~~i~~~~~--~~~~piilv~nK 136 (189)
T 1z06_A 65 DGERIKIQLWDTAGQERFRKSMVQHYY-----RNVHAVVFVYDMTNMAS-FHSLPAWIEECKQHLL--ANDIPRILVGNK 136 (189)
T ss_dssp TTEEEEEEEEECCCSHHHHTTTHHHHH-----TTCCEEEEEEETTCHHH-HHTHHHHHHHHHHHCC--CSCCCEEEEEEC
T ss_pred CCEEEEEEEEECCCchhhhhhhhHHHh-----cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcC--CCCCCEEEEEEC
Confidence 001235678899997765534555555 68888888776654211 1111222122222221 112334689999
Q ss_pred ccccC
Q 007747 574 FDTID 578 (591)
Q Consensus 574 ~D~i~ 578 (591)
+|...
T Consensus 137 ~Dl~~ 141 (189)
T 1z06_A 137 CDLRS 141 (189)
T ss_dssp TTCGG
T ss_pred ccccc
Confidence 99853
No 217
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.46 E-value=9.1e-05 Score=67.74 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|+.||||||+++.+++-
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 218
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.46 E-value=5.1e-05 Score=83.54 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=48.9
Q ss_pred cchhcc-chhHHHHHHHHHHHHhchhcCCC--cEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 500 VVLVDT-AGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 500 ~vliDt-SGg~~qr~~LaraL~kl~~~~~P--dlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
..+..+ |||++|++.||++|. .+| +++|| ||||+|||+..+.. +.+.|..+.. + .+.|++|.
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~-----~~~~~~~lil-DEp~~gld~~~~~~-i~~~l~~~~~-~----~~vi~itH 456 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTV-----LGADTPSVVF-DEVDAGIGGAAAIA-VAEQLSRLAD-T----RQVLVVTH 456 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHH-----HCCCSSEEEE-CSCSSSCCTHHHHH-HHHHHHHHHH-H----SEEEEECC
T ss_pred ccHHhcCCHHHHHHHHHHHHHH-----hCCCCCEEEE-eCCcCCCCHHHHHH-HHHHHHHHhC-C----CEEEEEec
Confidence 456677 999999999999999 899 99999 99999999998744 4477777764 2 34455554
No 219
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.45 E-value=0.00017 Score=68.56 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
|.+|+|+|++||||||+.+.|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4489999999999999999999876
No 220
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.45 E-value=0.00029 Score=72.20 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=84.2
Q ss_pred ceEEEEEcc-CCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecch-----hhhhhh----------------cccc
Q 007747 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL-----RTHARR----------------LQVP 472 (591)
Q Consensus 415 p~ii~LvGp-NGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl-----~~~~~~----------------l~v~ 472 (591)
+.+|+|.|+ .|+||||+..-||..+...+.+|+++.+|..+...-..+ ..+.+. -++.
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l~ 183 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFD 183 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTEE
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCEE
Confidence 449999998 589999999999998887888999999998432111000 001110 1222
Q ss_pred eeecCC-CCCHH-----HHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC-CCCHHH
Q 007747 473 IFEKGY-EKDPA-----IVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVD 545 (591)
Q Consensus 473 l~~~~~-~~d~~-----~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~-GlD~~~ 545 (591)
+...+. ..++. ....+.++.+. ..+|.+++|+++...- .-+..+. ...|.+|+|-.|.. ..+...
T Consensus 184 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~--~d~~~l~-----~~ad~vilV~~~~~~~~~~~~ 255 (299)
T 3cio_A 184 VITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAV--SDAAVVG-----RSVGTSLLVARFGLNTAKEVS 255 (299)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTC--THHHHHG-----GGCSEEEEEEETTTSCTTHHH
T ss_pred EEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchh--HHHHHHH-----HHCCEEEEEEcCCCChHHHHH
Confidence 222221 12232 22344455443 4589999999887641 1122344 34677777666533 333322
Q ss_pred HHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
..+..+... ...+.++|++++|.-
T Consensus 256 ------~~~~~l~~~--~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 256 ------LSMQRLEQA--GVNIKGAILNGVIKR 279 (299)
T ss_dssp ------HHHHHHHHT--TCCCCCEEEEECCCC
T ss_pred ------HHHHHHHhC--CCCeEEEEEeCCccC
Confidence 223333332 234667999999874
No 221
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.45 E-value=6.5e-05 Score=67.46 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
..++|+|+.||||||+++.+++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999985
No 222
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.45 E-value=0.00023 Score=66.26 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|++||||||+++.+++
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999875
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.44 E-value=4.4e-05 Score=70.84 Aligned_cols=23 Identities=35% Similarity=0.292 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.++|+|++|||||||++.|++..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998753
No 224
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.43 E-value=0.00049 Score=67.96 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=78.1
Q ss_pred EEEEEc-cCCCcHHHHHHHHHhhhhcCCcEEEEcccccceee------eec---chhhhh-------h-----hccccee
Q 007747 417 VVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG------AVE---QLRTHA-------R-----RLQVPIF 474 (591)
Q Consensus 417 ii~LvG-pNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Rig------ave---Ql~~~~-------~-----~l~v~l~ 474 (591)
+|+|++ ..|+||||+...||..+...+.+|+++.+|..... .-. .+..+. + .-++.+.
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~l 83 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKVV 83 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEEE
Confidence 666654 56799999999999988877889999999974211 000 011000 0 0122222
Q ss_pred ecCCCCCH-----HHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 475 EKGYEKDP-----AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 475 ~~~~~~d~-----~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
......+. .....+.++.+. ..+|++++|++++... ....+. ...|.+|+|-+|.. ........
T Consensus 84 p~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~---~~~~~~-----~~ad~vi~v~~~~~--~~~~~~~~ 152 (263)
T 1hyq_A 84 PAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLER---SAVIAI-----AAAQELLLVVNPEI--SSITDGLK 152 (263)
T ss_dssp ECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSH---HHHHHH-----HHSSEEEEEECSSH--HHHHHHHH
T ss_pred cCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCCh---HHHHHH-----HHCCEEEEEeCCCh--hHHHHHHH
Confidence 21110011 122233444443 5689999999987652 222222 24567777666642 11222222
Q ss_pred HHHHHHHhhcCCCCccceEEEeccccc
Q 007747 550 FNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
+.+.+... ...+.++|+++++.
T Consensus 153 ~~~~l~~~-----~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 153 TKIVAERL-----GTKVLGVVVNRITT 174 (263)
T ss_dssp HHHHHHHH-----TCEEEEEEEEEECT
T ss_pred HHHHHHhc-----CCCeeEEEEccCCc
Confidence 22333322 23567899999886
No 225
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.43 E-value=0.00022 Score=76.76 Aligned_cols=114 Identities=25% Similarity=0.269 Sum_probs=57.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
.++|||.+|||||||++.|++-- +. .+......... . .+.. +...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~------~~----------~v~~~~g~T~d--~-~~~~----------------~~~~ 49 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER------IS----------IVEDTPGVTRD--R-IYSS----------------AEWL 49 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE------CC-----------------------C-EEEE----------------CTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC------ce----------eecCCCCCccc--e-EEEE----------------EEEC
Confidence 78999999999999999997521 10 01100000000 0 0000 0112
Q ss_pred CCCcchhccchhHHH-------HHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEE
Q 007747 497 GSDVVLVDTAGRMQD-------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 497 ~~d~vliDtSGg~~q-------r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (591)
+....++||+|-... -...+.... .++|++|+|-+++.|+...+. .+.+. +.... ..-.+
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~-----~~ad~il~vvD~~~~~~~~d~--~~~~~---l~~~~---~pvil 116 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM-----DEADVIIFMVNGREGVTAADE--EVAKI---LYRTK---KPVVL 116 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHH-----HHCSEEEEEEETTTCSCHHHH--HHHHH---HTTCC---SCEEE
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHH-----HhCCEEEEEEeCCCCCCHHHH--HHHHH---HHHcC---CCEEE
Confidence 346778999986421 111222222 478999988899999887653 12222 22222 34568
Q ss_pred EeccccccC
Q 007747 570 LLTKFDTID 578 (591)
Q Consensus 570 IlTK~D~i~ 578 (591)
+++|+|...
T Consensus 117 v~NK~D~~~ 125 (436)
T 2hjg_A 117 AVNKLDNTE 125 (436)
T ss_dssp EEECCCC--
T ss_pred EEECccCcc
Confidence 999999853
No 226
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.43 E-value=6.6e-05 Score=79.83 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=43.5
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc--c--cceeeeecch
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--D--TFRSGAVEQL 462 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~--D--t~RigaveQl 462 (591)
.+++++++.+++|+ +++|+||||+||||+++.|++.+ +|.+..... + .|.+|.++|-
T Consensus 157 ~~l~~~~~~i~~~~--~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~ 217 (377)
T 1svm_A 157 DFLKCMVYNIPKKR--YWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQ 217 (377)
T ss_dssp HHHHHHHHCCTTCC--EEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTC
T ss_pred HHHHhcccccCCCC--EEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcch
Confidence 56788899999999 99999999999999999999864 577665221 1 1345665654
No 227
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.43 E-value=0.00019 Score=73.73 Aligned_cols=116 Identities=20% Similarity=0.155 Sum_probs=64.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
.++|+|.+|||||||++.|.+.-. .+.. ..+|. +.....++ +. ..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~------~ivs-------~~~~t-Tr~~i~~i--~~-------------------~~ 53 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKV------APIS-------PRPQT-TRKRLRGI--LT-------------------EG 53 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC------SCCC-------SSSCC-CCSCEEEE--EE-------------------ET
T ss_pred EEEEECCCCCCHHHHHHHHhCCce------eeec-------CCCCc-eeEEEEEE--EE-------------------eC
Confidence 799999999999999999986321 1000 00110 00000000 00 11
Q ss_pred CCCcchhccchhHHHH-------HHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEE
Q 007747 497 GSDVVLVDTAGRMQDN-------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr-------~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (591)
+....++||+|-...+ ...+.... .+.|.+|+|-+++.+....+. ..+..+.... ......+
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l-----~~ad~il~VvD~~~~~~~~~~-----~i~~~l~~~~-~~~p~il 122 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEAL-----ADVNAVVWVVDLRHPPTPEDE-----LVARALKPLV-GKVPILL 122 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHT-----SSCSEEEEEEETTSCCCHHHH-----HHHHHHGGGT-TTSCEEE
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHH-----hcCCEEEEEEECCCCCChHHH-----HHHHHHHhhc-CCCCEEE
Confidence 2356788999854311 11222222 688999998899988876543 2223333221 1234568
Q ss_pred EeccccccC
Q 007747 570 LLTKFDTID 578 (591)
Q Consensus 570 IlTK~D~i~ 578 (591)
+++|+|...
T Consensus 123 V~NK~Dl~~ 131 (301)
T 1wf3_A 123 VGNKLDAAK 131 (301)
T ss_dssp EEECGGGCS
T ss_pred EEECcccCC
Confidence 999999864
No 228
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.42 E-value=0.00026 Score=64.91 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|+.|||||||++.|++-
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 347999999999999999999853
No 229
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.42 E-value=0.00018 Score=68.49 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=64.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~ 495 (591)
..++|+|+.|||||||++.+++-..+..+ .+ ...... .+.... .
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~~~~~-------~~-----------~~~~~~--~~~~~~----------------~ 51 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-------TS-----------ITDSSA--IYKVNN----------------N 51 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCBC-------CC-----------CSCEEE--EEECSS----------------T
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccc-------CC-----------cceeeE--EEEecC----------------C
Confidence 47899999999999999999864322111 00 000000 000000 0
Q ss_pred cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHH-HHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV-DQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 496 ~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~-~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
.++.+.++||+|..+.+..+..... .+++.+++|-+++.-.+.. .....+...+..... ......-.++.||+
T Consensus 52 ~~~~~~i~Dt~G~~~~~~~~~~~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~ 125 (214)
T 2fh5_B 52 RGNSLTLIDLPGHESLRFQLLDRFK-----SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA-LKNSPSLLIACNKQ 125 (214)
T ss_dssp TCCEEEEEECCCCHHHHHHHHHHHG-----GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT-STTCCEEEEEEECT
T ss_pred CccEEEEEECCCChhHHHHHHHHHH-----hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhh-cccCCCEEEEEECC
Confidence 1345778999998765554555554 5778888776665411101 111112122221111 11123456999999
Q ss_pred cccCC
Q 007747 575 DTIDD 579 (591)
Q Consensus 575 D~i~d 579 (591)
|....
T Consensus 126 Dl~~~ 130 (214)
T 2fh5_B 126 DIAMA 130 (214)
T ss_dssp TSTTC
T ss_pred CCCCc
Confidence 98643
No 230
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.41 E-value=0.00033 Score=69.29 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..|+|+|+.|||||||++.|++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999863
No 231
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.41 E-value=0.00022 Score=66.56 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=62.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~ 494 (591)
+..++|+|+.|||||||++.|++-...... ..+ ++ ..+... .
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------~~t--~~-------------~~~~~~-----------------~ 63 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDM------IPT--VG-------------FNMRKI-----------------T 63 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC------CCC--CS-------------EEEEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCcc------CCC--Cc-------------eeEEEE-----------------E
Confidence 457999999999999999999863211100 000 00 000000 0
Q ss_pred hcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC-CCccceEEEecc
Q 007747 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTK 573 (591)
Q Consensus 495 ~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK 573 (591)
..++.+.++||+|..+.+. +..... .+.+.+++|-+.+......... ..+..+.... .....-.+++||
T Consensus 64 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~D~~~~~s~~~~~----~~~~~~~~~~~~~~~piilv~NK 133 (188)
T 1zd9_A 64 KGNVTIKLWDIGGQPRFRS-MWERYC-----RGVSAIVYMVDAADQEKIEASK----NELHNLLDKPQLQGIPVLVLGNK 133 (188)
T ss_dssp ETTEEEEEEEECCSHHHHT-THHHHH-----TTCSEEEEEEETTCGGGHHHHH----HHHHHHHTCGGGTTCCEEEEEEC
T ss_pred eCCEEEEEEECCCCHhHHH-HHHHHH-----ccCCEEEEEEECCCHHHHHHHH----HHHHHHHhCcccCCCCEEEEEEC
Confidence 1134567889998765433 333333 5788888877766533222221 2233332211 012335689999
Q ss_pred ccccC
Q 007747 574 FDTID 578 (591)
Q Consensus 574 ~D~i~ 578 (591)
+|...
T Consensus 134 ~Dl~~ 138 (188)
T 1zd9_A 134 RDLPG 138 (188)
T ss_dssp TTSTT
T ss_pred CCCcc
Confidence 99853
No 232
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.40 E-value=0.00014 Score=66.33 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
...++|+|+.||||||+++.|++-
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 347999999999999999999863
No 233
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.40 E-value=0.00031 Score=65.37 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|+.||||||+++.|++
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 44799999999999999999985
No 234
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.40 E-value=0.00025 Score=63.96 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.-++|+|+.||||||+++.+++-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 235
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.40 E-value=0.00012 Score=66.85 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|+.||||||+++.|++-
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.40 E-value=7.7e-05 Score=72.41 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.5
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
+|+ +++|+||+||||||+++.|++.+.
T Consensus 18 ~g~--~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRK--TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCC--EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCC--EEEEECcCCCCHHHHHHHHHhhCC
Confidence 567 999999999999999999998764
No 237
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.38 E-value=0.00026 Score=63.81 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.-++|+|+.||||||+++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999854
No 238
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.37 E-value=0.00017 Score=67.32 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.++|+|++|||||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
No 239
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=0.0002 Score=66.69 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=60.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~ 494 (591)
...++|+|+.||||||+++.+++-... . . ..| +| .....+ .
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~---~--~--~~t--~~-----------~~~~~~-------------------~ 56 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV---H--T--SPT--IG-----------SNVEEI-------------------V 56 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE---E--E--ECC--SC-----------SSCEEE-------------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC---c--C--cCC--Cc-----------cceEEE-------------------E
Confidence 347999999999999999999852111 0 0 001 00 000000 0
Q ss_pred hcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC-CCccceEEEecc
Q 007747 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTK 573 (591)
Q Consensus 495 ~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK 573 (591)
..+..+.++||+|..+.+. +.+... .+.+.+++|-+++.......... .+..+.... .....-.+++||
T Consensus 57 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~s~~~~~~----~~~~~~~~~~~~~~piilv~NK 126 (187)
T 1zj6_A 57 INNTRFLMWDIGGQESLRS-SWNTYY-----TNTEFVIVVVDSTDRERISVTRE----ELYKMLAHEDLRKAGLLIFANK 126 (187)
T ss_dssp ETTEEEEEEECCC----CG-GGHHHH-----TTCCEEEEEEETTCTTTHHHHHH----HHHHHHTSGGGTTCEEEEEEEC
T ss_pred ECCEEEEEEECCCCHhHHH-HHHHHh-----cCCCEEEEEEeCCCHHHHHHHHH----HHHHHHhchhhCCCeEEEEEEC
Confidence 0124567889988755332 233333 57888888877776643333222 222332210 112345689999
Q ss_pred ccccC
Q 007747 574 FDTID 578 (591)
Q Consensus 574 ~D~i~ 578 (591)
+|...
T Consensus 127 ~Dl~~ 131 (187)
T 1zj6_A 127 QDVKE 131 (187)
T ss_dssp TTSTT
T ss_pred CCCcC
Confidence 99853
No 240
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.37 E-value=0.00097 Score=64.54 Aligned_cols=144 Identities=18% Similarity=0.162 Sum_probs=81.0
Q ss_pred eEEEEEcc-CCCcHHHHHHHHHhhhhcCCcEEEEccccccee------eeec---chhhhh-------hh------cccc
Q 007747 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------GAVE---QLRTHA-------RR------LQVP 472 (591)
Q Consensus 416 ~ii~LvGp-NGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Ri------gave---Ql~~~~-------~~------l~v~ 472 (591)
++|+|+|. -|+||||+...||..+...+.+|++..+|..+. |.-. .+..+. +. -++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 37777765 579999999999998887788999999987421 1000 011000 00 1222
Q ss_pred eeecCCCCCH-------HHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHH
Q 007747 473 IFEKGYEKDP-------AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (591)
Q Consensus 473 l~~~~~~~d~-------~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~ 545 (591)
+.. +. ... .....+.++.+. ..+|++++|++++.. .....+. ...|.+++|-+|.. ....
T Consensus 83 ~lp-~~-~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~---~~~~~~~-----~~ad~vi~v~~~~~--~~~~ 149 (237)
T 1g3q_A 83 VLP-GA-VDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQ---LDAMSAM-----LSGEEALLVTNPEI--SCLT 149 (237)
T ss_dssp EEC-CC-CSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSS---HHHHHHH-----TTCSEEEEEECSCH--HHHH
T ss_pred EEe-CC-CccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcC---HHHHHHH-----HHCCeEEEEecCCc--ccHH
Confidence 221 11 111 112233444433 468999999988765 2333444 56788888777642 1122
Q ss_pred HHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
.....+..+... ...+.++|+++++.-
T Consensus 150 ---~~~~~~~~l~~~--~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 150 ---DTMKVGIVLKKA--GLAILGFVLNRYGRS 176 (237)
T ss_dssp ---HHHHHHHHHHHT--TCEEEEEEEEEETSC
T ss_pred ---HHHHHHHHHHhC--CCceEEEEEecCCcc
Confidence 222333334332 235678999999863
No 241
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.36 E-value=9.7e-05 Score=66.99 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.-++|+|+.||||||+++.+++.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999754
No 242
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.36 E-value=0.00027 Score=64.00 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|+.||||||+++.+++
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999975
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.35 E-value=9.7e-05 Score=69.40 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=33.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
.+++|+|++||||||+++.|+..+.+.++.|.+...|..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 399999999999999999999999888888876655543
No 244
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.35 E-value=6.9e-05 Score=83.50 Aligned_cols=40 Identities=30% Similarity=0.349 Sum_probs=34.0
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc-EEE-Eccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVM-MAAC 451 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G-~V~-i~~~ 451 (591)
+.+|+ +++|+|+|||||||++++|++.+.+.+| +|. +.+.
T Consensus 366 ~~~G~--iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGF--TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGSCE--EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cccce--EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 34677 9999999999999999999999998876 786 5443
No 245
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.35 E-value=0.00019 Score=71.86 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhh
Q 007747 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 375 ~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
|......++..+.+.+.++... ...+..++++|..|+|||||++.|++-
T Consensus 14 ~~~l~~~~~~~l~~~~~~~~~~---------------~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 14 INTFAPATQTKLLELLGNLKQE---------------DVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHT---------------TCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred hhhccHHHHHHHHHHHHHHhhc---------------CCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4444555666665555554321 112447999999999999999999863
No 246
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.34 E-value=0.00014 Score=66.53 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|+.||||||+++.+++-
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 347899999999999999999863
No 247
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.33 E-value=0.00044 Score=62.35 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.-++|+|+.||||||+++.|++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
No 248
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.33 E-value=0.00025 Score=77.23 Aligned_cols=114 Identities=25% Similarity=0.232 Sum_probs=58.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
.++|+|+.|||||||++.|++.-... +..... .. . ... ...+...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~a~----------------v~~~~g-------------tT--~-d~~---~~~i~~~ 270 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDRAI----------------VTDLPG-------------TT--R-DVV---ESQLVVG 270 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHBSC----------------CSCCTT-------------CC--H-HHH---HHEEEET
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCccc----------------ccCCCC-------------ee--E-EEE---EEEEEEC
Confidence 69999999999999999998742110 000000 00 0 000 0011123
Q ss_pred CCCcchhccchhHHHHHH-----HHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEe
Q 007747 497 GSDVVLVDTAGRMQDNEP-----LMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 571 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~-----LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIl 571 (591)
+..+.++||+|-...... +.+.+. ...++|++|+|-+++.+...... ..+..+.. ....+++
T Consensus 271 g~~v~liDT~G~~~~~~~ve~~gi~~~~~---~~~~aD~vl~VvD~s~~~~~~~~-----~i~~~l~~-----~piivV~ 337 (462)
T 3geh_A 271 GIPVQVLDTAGIRETSDQVEKIGVERSRQ---AANTADLVLLTIDAATGWTTGDQ-----EIYEQVKH-----RPLILVM 337 (462)
T ss_dssp TEEEEECC--------------------C---CCCSCSEEEEEEETTTCSCHHHH-----HHHHHHTT-----SCEEEEE
T ss_pred CEEEEEEECCccccchhHHHHHHHHHHhh---hhhcCCEEEEEeccCCCCCHHHH-----HHHHhccC-----CcEEEEE
Confidence 445788999995332111 122222 23678999988888888776542 22333322 2456899
Q ss_pred ccccccC
Q 007747 572 TKFDTID 578 (591)
Q Consensus 572 TK~D~i~ 578 (591)
||+|...
T Consensus 338 NK~Dl~~ 344 (462)
T 3geh_A 338 NKIDLVE 344 (462)
T ss_dssp ECTTSSC
T ss_pred ECCCCCc
Confidence 9999853
No 249
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.32 E-value=0.00092 Score=66.48 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=78.9
Q ss_pred EEEEEccC-CCcHHHHHHHHHhhhhcCCcEEEEcccccceeee--ecchh---------hhhh----hcccceeecCC--
Q 007747 417 VVVFVGVN-GVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--VEQLR---------THAR----RLQVPIFEKGY-- 478 (591)
Q Consensus 417 ii~LvGpN-GsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Riga--veQl~---------~~~~----~l~v~l~~~~~-- 478 (591)
+|+|++.- |+||||+..-||..+...+.+|+++.+|...... ..... .+.. .-++.+...+.
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~~~ 99 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQFLL 99 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGGGS
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccccC
Confidence 78877654 7999999999999888778899999999754111 00000 0000 00111111100
Q ss_pred -C-------CC--HHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHH
Q 007747 479 -E-------KD--PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (591)
Q Consensus 479 -~-------~d--~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~ 548 (591)
. .. ......+.++.+....||++++|++++.........++. ..|.+|+|-+|... .... ..
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~------~aD~viiv~~~~~~-s~~~-~~ 171 (262)
T 2ph1_A 100 PKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDA------KPTGVVVVSTPQEL-TAVI-VE 171 (262)
T ss_dssp TTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHH------CCSEEEEEECSSSC-CHHH-HH
T ss_pred CCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhc------cCCeEEEEecCccc-hHHH-HH
Confidence 0 01 112333333332225689999999988643221122222 45778777777642 2222 21
Q ss_pred HHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 549 KFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
..+..+... ...+-++|++++|.
T Consensus 172 ---~~~~~l~~~--~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 172 ---KAINMAEET--NTSVLGLVENMSYF 194 (262)
T ss_dssp ---HHHHHHHTT--TCCEEEEEETTCCE
T ss_pred ---HHHHHHHhC--CCCEEEEEECCCcc
Confidence 333333332 23566799999874
No 250
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.32 E-value=7.2e-05 Score=86.51 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=65.3
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcC---CcEEEEcccccceeeeecchhhhhhhcccceee-cCCCCCHHHHHH
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE-KGYEKDPAIVAK 487 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~---~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~-~~~~~d~~~~a~ 487 (591)
.|+ +++++||||+||||++..+++..... ++.|.+. . ..|..+..+...+...+++.+.. .++....
T Consensus 108 ~~~--~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl-~-P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~----- 178 (773)
T 2xau_A 108 NNQ--IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT-Q-PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF----- 178 (773)
T ss_dssp HCS--EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE-E-SCHHHHHHHHHHHHHHTTCCBTTTEEEEETT-----
T ss_pred CCC--eEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec-C-chHHHHHHHHHHHHHHhCCchhheecceecc-----
Confidence 456 89999999999999998887654432 3345543 2 23444444434444444332211 0110000
Q ss_pred HHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccC-CCCHHHHH
Q 007747 488 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQL 547 (591)
Q Consensus 488 ~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~-GlD~~~q~ 547 (591)
-.....+..++-+++|+.++..+.+.+. .++++|++ |||.. ++|.....
T Consensus 179 -----~~~~~~~~~I~v~T~G~l~r~l~~~~~l-----~~~~~lIl-DEah~R~ld~d~~~ 228 (773)
T 2xau_A 179 -----ENKTSNKTILKYMTDGMLLREAMEDHDL-----SRYSCIIL-DEAHERTLATDILM 228 (773)
T ss_dssp -----EEECCTTCSEEEEEHHHHHHHHHHSTTC-----TTEEEEEE-CSGGGCCHHHHHHH
T ss_pred -----ccccCCCCCEEEECHHHHHHHHhhCccc-----cCCCEEEe-cCccccccchHHHH
Confidence 0001123334445677777766665544 78888888 99996 88765443
No 251
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.31 E-value=0.00016 Score=65.87 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.-++|+|+.||||||+++.+++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999985
No 252
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.31 E-value=0.00039 Score=62.60 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+.-++|+|+.||||||+++.|++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 34789999999999999999986
No 253
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.30 E-value=0.00016 Score=67.00 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.|||||||++.|++-
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999975
No 254
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.29 E-value=0.00039 Score=62.63 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=60.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
-++|+|+.||||||+++.+++-..... ..| ++ .....+ ...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~-------~~t--~~-----------~~~~~~-------------------~~~ 42 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT-------IPT--IG-----------FNVETV-------------------EYK 42 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-------CCC--SS-----------CCEEEE-------------------ECS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc-------cCc--Cc-----------eeEEEE-------------------EEC
Confidence 478999999999999999975321100 000 00 000000 012
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCC-CCccceEEEecccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFD 575 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~D 575 (591)
+....++||+|..+.+. +..... .+.+.+++|-+++......... ..+..+.... .....-.++.||+|
T Consensus 43 ~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRP-LWRHYF-----QNTQGLIFVVDSNDRERVNEAR----EELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp SCEEEEEECCCCGGGHH-HHHHHT-----TTCSEEEEEEETTCGGGHHHHH----HHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEEcCCChhhHH-HHHHHh-----ccCCEEEEEEECCCHHHHHHHH----HHHHHHHhchhhcCCeEEEEEECcC
Confidence 34567889998765432 333344 6788888877766542222211 2233332211 11234568999999
Q ss_pred ccC
Q 007747 576 TID 578 (591)
Q Consensus 576 ~i~ 578 (591)
...
T Consensus 113 l~~ 115 (164)
T 1r8s_A 113 LPN 115 (164)
T ss_dssp STT
T ss_pred CcC
Confidence 853
No 255
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.28 E-value=0.0016 Score=63.74 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=82.1
Q ss_pred eEEEEEccC-CCcHHHHHHHHHhhhhcCCcEEEEcccccceee--eecc--------hhh-------hhhh-------cc
Q 007747 416 YVVVFVGVN-GVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG--AVEQ--------LRT-------HARR-------LQ 470 (591)
Q Consensus 416 ~ii~LvGpN-GsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Rig--aveQ--------l~~-------~~~~-------l~ 470 (591)
++|+|+|.. |+||||+...||..+...+.+|++..+|..... .... +.. +.+. -+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 378887664 599999999999998888889999999973211 0000 000 0000 12
Q ss_pred cceeecCCCC----CHHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHH
Q 007747 471 VPIFEKGYEK----DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (591)
Q Consensus 471 v~l~~~~~~~----d~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q 546 (591)
+.+....... -......+.++.+....||++++|++++... ....+. ...|.+++|-+|. ...
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~---~~~~~l-----~~ad~vi~v~~~~----~~s- 149 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET---GALMAL-----YFADEAIITTNPE----VSS- 149 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSH---HHHHHH-----HTCSEEEEEECSS----HHH-
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCH---HHHHHH-----HhCCEEEEEecCC----hhH-
Confidence 2222111110 0123344555555433799999999887653 233333 3678888877663 222
Q ss_pred HHHHHHHHHHhhcCCC------CccceEEEeccccc
Q 007747 547 LSKFNQKLADLSSSPN------PQLIDGILLTKFDT 576 (591)
Q Consensus 547 ~~~f~~~L~~l~~~~~------~~~it~IIlTK~D~ 576 (591)
.......+..+..... ....-++|+++++.
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 150 VRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred HHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 2223334444433221 11356899999874
No 256
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.28 E-value=0.00021 Score=64.92 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.|||||||++.|++-
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 347999999999999999999853
No 257
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.26 E-value=0.0006 Score=71.96 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=32.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhh-----------cCCcEEEEcccccc---eeeeecch
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLL-----------QHKVSVMMAACDTF---RSGAVEQL 462 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~-----------~~~G~V~i~~~Dt~---RigaveQl 462 (591)
+++|+|++|||||||++.|++... +..+.|.+.+..+. -+|++.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~l 240 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGI 240 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcC
Confidence 699999999999999999998654 34567777664331 25655543
No 258
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.26 E-value=0.00052 Score=68.09 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.+..|+|||.+|||||||++.|.+-
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999874
No 259
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.26 E-value=0.001 Score=66.73 Aligned_cols=23 Identities=26% Similarity=0.240 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.++|+|..||||||+++.|+|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999753
No 260
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.25 E-value=0.0005 Score=64.43 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
...++|+|+.|||||||++.|.+-
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999853
No 261
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.24 E-value=0.00037 Score=63.85 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.||||||+++.+++-
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999853
No 262
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.23 E-value=0.00019 Score=70.69 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=31.4
Q ss_pred ccccccccc---cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc
Q 007747 403 LRDVHAAKE---QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (591)
Q Consensus 403 L~~is~~i~---~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~ 449 (591)
|.++++.+. .|. +|+|.||+||||||++++|+.++.+ ++.|...
T Consensus 13 ~~~~~~~~~~~~~g~--~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSA--FITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCE--EEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCe--EEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 344555543 565 9999999999999999999999988 7777543
No 263
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.23 E-value=0.00017 Score=66.92 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+...++|+|+.||||||+++.|++-
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999863
No 264
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.22 E-value=0.00061 Score=71.14 Aligned_cols=23 Identities=26% Similarity=0.240 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.++|||..||||||+++.|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
No 265
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.22 E-value=0.00076 Score=66.95 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=29.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R 455 (591)
.|.+++|+|++||||||+.+.|+..+. .+.+. ...|.+|
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~-~~~D~~r 69 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVI-IDGDSFR 69 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEE-ECGGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEE-EecHHHH
Confidence 455999999999999999999998764 23344 4456665
No 266
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.22 E-value=0.0003 Score=65.68 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.|||||||++.|++-
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999863
No 267
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.20 E-value=0.0014 Score=62.37 Aligned_cols=129 Identities=17% Similarity=0.100 Sum_probs=64.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~ 495 (591)
.-++|+|+.|||||||++.|++-..... ...-.+.+... . .+.+.. ..... .....
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~-----------~--~~~~~~--~~~~~--------~~~~~ 81 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPK-FITTVGIDFRE-----------K--RVVYNA--QGPNG--------SSGKA 81 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCE-EEEEEEEEEEE-----------E--EEEEEC-----------------CCE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcC-CCCceeEEEEE-----------E--EEEECC--ccccc--------cccCc
Confidence 4689999999999999999986322111 01111111100 0 001100 00000 00111
Q ss_pred cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC-CccceEEEeccc
Q 007747 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKF 574 (591)
Q Consensus 496 ~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK~ 574 (591)
..+.+.++||+|....+. +..... .+.+.+|+|-+++.. .. .......+..+..... ....-.+++||+
T Consensus 82 ~~~~l~l~Dt~G~~~~~~-~~~~~~-----~~~d~iilV~D~~~~---~s-~~~~~~~l~~i~~~~~~~~~piilV~NK~ 151 (217)
T 2f7s_A 82 FKVHLQLWDTAGQERFRS-LTTAFF-----RDAMGFLLMFDLTSQ---QS-FLNVRNWMSQLQANAYCENPDIVLIGNKA 151 (217)
T ss_dssp EEEEEEEEEEESHHHHHH-HHHHHH-----TTCCEEEEEEETTCH---HH-HHHHHHHHHTCCCCCTTTCCEEEEEEECT
T ss_pred eeEEEEEEECCCcHhHHh-HHHHHh-----cCCCEEEEEEECcCH---HH-HHHHHHHHHHHHHhcCcCCCCEEEEEECC
Confidence 234578899999765433 344444 578888877666542 21 1222223333332211 223456899999
Q ss_pred cccC
Q 007747 575 DTID 578 (591)
Q Consensus 575 D~i~ 578 (591)
|...
T Consensus 152 Dl~~ 155 (217)
T 2f7s_A 152 DLPD 155 (217)
T ss_dssp TCGG
T ss_pred cccc
Confidence 9854
No 268
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.20 E-value=0.00015 Score=80.58 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=37.2
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcc
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~ 450 (591)
++.++++.+ +|. +++|+||||+||||+++.|++.+.+..+.|.+.+
T Consensus 98 ~l~~~~~~~-~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGP--ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSC--EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHhcccC-CCC--EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 445566665 566 9999999999999999999999987777776554
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.0004 Score=70.76 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce
Q 007747 380 SIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (591)
Q Consensus 380 ~~v~~~l~~~L~~il~~~~~~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R 455 (591)
..+...+.+.+..++.... ....|.++.|+||+||||||+.+.|+..+. .+-+.| ..|++|
T Consensus 10 ~~~~~~~~~~~~~~l~~~~------------~~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~I-s~D~~R 70 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKK------------AVESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVI-DNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------CCSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEE-CTHHHH
T ss_pred HHHHHHHHHHHHHHhcccc------------CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEE-echHhH
Confidence 4566677777777765321 123466999999999999999999987552 233444 467766
No 270
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.19 E-value=0.00027 Score=63.07 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++++|+.||||||+++.+++-
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.19 E-value=0.00016 Score=66.60 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=22.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
+++|+||+||||||+++.|++.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999999874
No 272
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.18 E-value=0.0006 Score=71.74 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=38.6
Q ss_pred chhccchhHHHHHHH------HHHHHhchhcCC-CcEEEEEecccCCCCHHHHHHHHHHHHHHhh
Q 007747 501 VLVDTAGRMQDNEPL------MRALSKLIYLNN-PDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (591)
Q Consensus 501 vliDtSGg~~qr~~L------araL~kl~~~~~-PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~ 558 (591)
.+..+|||+++++.| +++|. .+ |+++|| |||++|||+..+.. +.+.|..+.
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~-----~~~~~~lll-DEp~~~LD~~~~~~-l~~~l~~~~ 334 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALI-----GNRVECIIL-DEPTVYLDENRRAK-LAEIFRKVK 334 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHH-----SSCCSEEEE-ESTTTTCCHHHHHH-HHHHHHHCC
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHh-----cCCCCeEEE-eCCCCcCCHHHHHH-HHHHHHHhc
Confidence 345789999998855 45555 78 999999 99999999988744 335665553
No 273
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.17 E-value=0.0002 Score=67.30 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.-++|+|+.||||||+++.|++
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999975
No 274
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.16 E-value=0.0014 Score=64.80 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=34.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
++|+|.|.-|+||||+..-||..+...+.+|+++.+|..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 377788999999999999999988877889999999974
No 275
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.15 E-value=0.0011 Score=64.15 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=32.8
Q ss_pred EEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 418 VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 418 i~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
|+|.|.-|+||||+..-||..+...+.+|+++.+|.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 556899999999999999999988888999999997
No 276
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.15 E-value=0.00079 Score=67.34 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.++|+|..|||||||++.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999875
No 277
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.15 E-value=0.00023 Score=76.04 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=32.8
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHh------------hhhcCCcEEEEcc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAY------------WLLQHKVSVMMAA 450 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg------------~l~~~~G~V~i~~ 450 (591)
+..|. .++|||+||||||||++.|+| .+.|+.|.|.+.+
T Consensus 17 v~~g~--~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 17 PGNNL--KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSCC--EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred ccCCC--EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 34666 999999999999999999999 4457788888765
No 278
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.15 E-value=0.00051 Score=64.59 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.-++|+|+.|||||||++.|++-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999753
No 279
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.14 E-value=0.0017 Score=65.18 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHh
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
|....++|+|..|+|||||++.|.+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSS
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhC
Confidence 4345799999999999999999864
No 280
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.14 E-value=0.00042 Score=65.31 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.+..++|+|+.|||||||++.|++-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3458999999999999999999863
No 281
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.14 E-value=0.00047 Score=63.83 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
.-++|+|+.|||||||++.|.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4689999999999999998887543
No 282
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.14 E-value=0.00062 Score=62.67 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
...++|+|+.||||||+++.+++-
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999853
No 283
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.11 E-value=0.00075 Score=68.56 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=36.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
+.+|+|.|--|+||||+..-||..+...+.+|+++.+|..
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4589999999999999999999988888889999999973
No 284
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.10 E-value=0.00034 Score=69.78 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|..|||||||++.|.+
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999986
No 285
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.10 E-value=0.00052 Score=61.68 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.-++|+|+.||||||+++.+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
No 286
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.10 E-value=0.0002 Score=65.94 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.|||||||++.|++-
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999863
No 287
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.10 E-value=0.00059 Score=64.51 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+.-++|+|+.|||||||++.|++
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999975
No 288
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.10 E-value=0.0011 Score=66.97 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=81.7
Q ss_pred EEEEEc---cCCCcHHHHHHHHHhhhhcCCcEEEEcccccceee-----e---ec-chhhhhhh--------------cc
Q 007747 417 VVVFVG---VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG-----A---VE-QLRTHARR--------------LQ 470 (591)
Q Consensus 417 ii~LvG---pNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Rig-----a---ve-Ql~~~~~~--------------l~ 470 (591)
+++|++ .-|+||||+...||..+...+.+|+++.+|..... . .. ....+.+. -+
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 115 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTDN 115 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESSSS
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccCCC
Confidence 777776 78999999999999988877889999999985421 0 00 00011110 01
Q ss_pred cceeecCCCCC-------------HHHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecc
Q 007747 471 VPIFEKGYEKD-------------PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (591)
Q Consensus 471 v~l~~~~~~~d-------------~~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEP 537 (591)
+.+........ ......++++.+. ..||++++|++++.... ...+|. ..|.+|+|-+|
T Consensus 116 l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~--~~~~l~------~aD~viiv~~~ 186 (298)
T 2oze_A 116 LDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVY--TNNAIV------ASDYVMIPLQA 186 (298)
T ss_dssp EEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHH--HHHHHH------HCSEEEEEECG
T ss_pred eEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHH--HHHHHH------HCCeEEEEecC
Confidence 22221111000 0112333343332 46899999998876432 122333 36788887777
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcC-CCCccceEEEeccccc
Q 007747 538 LVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTKFDT 576 (591)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK~D~ 576 (591)
... +... ...+.+.+..+... .....+-++|++++|.
T Consensus 187 ~~~-s~~~-~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 187 EEE-STNN-IQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp GGC-CHHH-HHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred cHH-HHHH-HHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 542 2222 22232444443221 1234567899999986
No 289
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.10 E-value=0.00051 Score=62.64 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.||||||+++.+++-
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999753
No 290
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.09 E-value=0.00026 Score=63.83 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.||||||+++.|++-
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999863
No 291
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.08 E-value=0.00035 Score=64.41 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|+.|||||||++.|++-
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999863
No 292
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.00029 Score=66.04 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..-++|+|+.||||||+++.|++-
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999863
No 293
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.08 E-value=0.0015 Score=64.78 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=33.3
Q ss_pred ceEEEEEccC-CCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 415 PYVVVFVGVN-GVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 415 p~ii~LvGpN-GsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
+.+|+|++.. |+||||+..-||..+. .+.+|+++.+|..
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 4488887654 5999999999999888 8889999999974
No 294
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.07 E-value=0.0003 Score=64.24 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.||||||+++.+++-
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999999863
No 295
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.07 E-value=0.00028 Score=65.75 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=29.2
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc-EEEEcc
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAA 450 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G-~V~i~~ 450 (591)
+|. +++|+|++||||||+++.|+.++.+.+. .|.+.+
T Consensus 4 ~g~--~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGC--TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCc--EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 455 9999999999999999999999877443 344443
No 296
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.07 E-value=0.00075 Score=72.98 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.+..++|+|..|+||||+++.|++.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccceeEEecCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999853
No 297
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.07 E-value=0.00048 Score=64.37 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
..-++|+|+.||||||+++.|++
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45799999999999999999986
No 298
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.07 E-value=0.00046 Score=63.59 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.||||||+++.+++-
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999999854
No 299
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.06 E-value=0.00028 Score=65.33 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|+.||||||+++.+++
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999975
No 300
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.05 E-value=0.00022 Score=67.99 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=25.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
++++|+|++||||||+.+.|+++ |...+.+-+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH
Confidence 58999999999999999999983 4444544333
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.04 E-value=0.00042 Score=65.63 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=30.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~ 451 (591)
+.+++|+|++||||||++.+|+..+...+.+|.+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 3489999999999999999999998877767665543
No 302
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=97.03 E-value=0.0069 Score=57.54 Aligned_cols=103 Identities=13% Similarity=0.223 Sum_probs=76.2
Q ss_pred eEEEeecCcEEEeeccccCCCCCCChhHHHHHhhhhccccC----CCceeecCCCCceeeeeEeecccceEEEEEecccc
Q 007747 4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSG----LASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRIL 79 (591)
Q Consensus 4 ~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~v~leer~~----~~~~~~~~~~~~~~lkw~~~ne~~lvfv~vyq~~l 79 (591)
..+.+.+|.+||..++.. . .....+.+.+| +|.. ..+|+++ +|+.++...| |++|+++=.+-.
T Consensus 57 ~Ya~VArg~tiLAE~t~~----~-gnf~~va~~iL--~kip~~~~r~t~~~~----~y~fHyl~~d--gl~yl~i~D~~~ 123 (173)
T 4afi_A 57 LFAVVARGTTILAKHAWC----G-GNFLEVTEQIL--AKIPSENNKLTYSHG----NYLFHYICQD--RIVYLCITDDDF 123 (173)
T ss_dssp EEEEEEETTEEEEEEESS----C-CCHHHHHHHHH--TTSCSSSEEEEEEET----TEEEEEEEET--TEEEEEEEETTS
T ss_pred EEEEEECCCEEEEEccCC----C-CCHHHHHHHHH--HhCCCCCCeEEEEEC----CEEEEEEEEC--CEEEEEEECCcc
Confidence 356788999999984332 2 33457777777 3432 2478999 9999998865 788999877777
Q ss_pred chhcHHHHHHHHHHHHHHhcCCcC---CCccchHHHHHHHHHHH
Q 007747 80 HLLYVDDLLAMMKQSFSEIYDPKR---TDYSDFDEMFRQLRKEA 120 (591)
Q Consensus 80 ~l~yvd~ll~~v~~~f~~~y~~~~---~~~~~f~~~f~~~l~~~ 120 (591)
.-.-.=.||++|+.+|...|+... ..| .|+..|...|++.
T Consensus 124 ~rr~aF~FLedI~~eF~~~yg~~~~ta~py-a~~~eF~~~L~~~ 166 (173)
T 4afi_A 124 ERSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQ 166 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGTCCTT-TTHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHhchhhhhccCc-chhHHHHHHHHHH
Confidence 655566689999999999997543 345 7898999999865
No 303
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.03 E-value=0.00049 Score=62.04 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.-++|+|+.||||||+++.+++-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 304
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.03 E-value=0.0018 Score=60.30 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
..-++|+|+.|||||||++.|.+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45799999999999999999986
No 305
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.02 E-value=0.00028 Score=77.19 Aligned_cols=118 Identities=19% Similarity=0.139 Sum_probs=56.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
.++|+|+.|||||||++.|++.-. .+.+ + ........... .+...
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~------a~vs-~---------~~gtT~d~~~~-------------------~i~~~ 279 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQER------AIVS-H---------MPGTTRDYIEE-------------------CFIHD 279 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC----------------------------------CE-------------------EEEET
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC------cccC-C---------CCCceEEEEEE-------------------EEEEC
Confidence 699999999999999999976321 1100 0 00000000000 00112
Q ss_pred CCCcchhccchhHHHHHHH-----HHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEe
Q 007747 497 GSDVVLVDTAGRMQDNEPL-----MRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 571 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~L-----araL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIl 571 (591)
+..+.++||+|-......+ .+.+. ...++|++|+|-+++.+..... .......+..+. .....+++
T Consensus 280 g~~l~liDT~G~~~~~~~ve~~gi~~~~~---~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~l~~l~-----~~piIvV~ 350 (476)
T 3gee_A 280 KTMFRLTDTAGLREAGEEIEHEGIRRSRM---KMAEADLILYLLDLGTERLDDE-LTEIRELKAAHP-----AAKFLTVA 350 (476)
T ss_dssp TEEEEEEC--------------------C---CCSSCSEEEEEEETTTCSSGGG-HHHHHHHHHHCT-----TSEEEEEE
T ss_pred CeEEEEEECCCCCcchhHHHHHHHHHHHh---hcccCCEEEEEEECCCCcchhh-hHHHHHHHHhcC-----CCCEEEEE
Confidence 3457889999965422111 11221 2368899999888888776521 111223343333 13456899
Q ss_pred ccccccC
Q 007747 572 TKFDTID 578 (591)
Q Consensus 572 TK~D~i~ 578 (591)
+|+|...
T Consensus 351 NK~Dl~~ 357 (476)
T 3gee_A 351 NKLDRAA 357 (476)
T ss_dssp ECTTSCT
T ss_pred ECcCCCC
Confidence 9999854
No 306
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.02 E-value=0.00064 Score=72.82 Aligned_cols=81 Identities=7% Similarity=-0.030 Sum_probs=54.3
Q ss_pred cchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc---c
Q 007747 500 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD---T 576 (591)
Q Consensus 500 ~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D---~ 576 (591)
..+..+|||+++++.|+++|+... ..+|+++|| |||+++||+..+. .+.+.|..+... +.+.||+|.-+ .
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~-~~~~~~lll-DEp~~~LD~~~~~-~l~~~l~~~~~~----~~~~ii~th~~~~~~ 401 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINS-YQPSPFFVL-DEVDAALDITNVQ-RIAAYIRRHRNP----DLQFIVISLKNTMFE 401 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHT-SSCCSEEEE-SSTTTTCCHHHHH-HHHHHHHHHCBT----TBEEEEECSCHHHHT
T ss_pred cccccCCcchHHHHHHHHHHHHhc-CCCCCEEEe-CCCcccCCHHHHH-HHHHHHHHHhcC----CCEEEEEECCHHHHH
Confidence 345678999999999999998322 247888888 9999999999874 444666665432 33445555322 2
Q ss_pred cCCcEEEEEec
Q 007747 577 IDDKHYQWSMC 587 (591)
Q Consensus 577 i~d~vGals~~ 587 (591)
.+|++-.|.+.
T Consensus 402 ~~d~~~~~~~~ 412 (430)
T 1w1w_A 402 KSDALVGVYRQ 412 (430)
T ss_dssp TCSEEEEEEEE
T ss_pred hCCEEEEEEEe
Confidence 35555545443
No 307
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.02 E-value=0.00063 Score=75.36 Aligned_cols=68 Identities=22% Similarity=0.139 Sum_probs=43.0
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
++.+.++||+|-........+.+ ...|.+|+|-+++.|...... ..+..+.... ..-.++++|+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l------~~aD~~IlVvDa~~g~~~~t~-----~~~~~~~~~~---ipiivviNK~Dl 146 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTL------TAVDCCLMVIDAAKGVEDRTR-----KLMEVTRLRD---TPILTFMNKLDR 146 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGG------GGCSEEEEEEETTTCSCHHHH-----HHHHHHTTTT---CCEEEEEECTTS
T ss_pred CeEEEEEECCCChhHHHHHHHHH------HHCCEEEEEEeCCccchHHHH-----HHHHHHHHcC---CCEEEEEcCcCC
Confidence 45678999999755333334443 478888888889998765432 2233332222 224689999998
Q ss_pred cC
Q 007747 577 ID 578 (591)
Q Consensus 577 i~ 578 (591)
..
T Consensus 147 ~~ 148 (529)
T 2h5e_A 147 DI 148 (529)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 308
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.02 E-value=0.00015 Score=69.80 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=25.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh---hcCCcEEEE
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL---LQHKVSVMM 448 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l---~~~~G~V~i 448 (591)
+++|+||+||||||+++.|++.+ .++.|.+..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 89999999999999999999876 344444433
No 309
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.02 E-value=0.0019 Score=67.55 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=38.5
Q ss_pred ccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 403 L~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
|+.+..-+.+|+ ++.|.|++|+||||++..||......++.|++...+.
T Consensus 36 LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 36 LDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp HHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred HHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 333333456888 9999999999999999999987666778888876553
No 310
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.01 E-value=0.00097 Score=61.48 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.++|+|+.||||||+++.+++-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999999863
No 311
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.01 E-value=0.0016 Score=62.97 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|+.|||||||++.|++
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999975
No 312
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.01 E-value=0.0032 Score=64.77 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=39.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D 452 (591)
...|+.+.--+.+|+ ++.|.|++|+||||++..||......+..|++....
T Consensus 55 ~~~LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 55 FTELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CHHHHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred hHHHHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 334555555577899 999999999999999999996655555678777655
No 313
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.00 E-value=0.00027 Score=66.72 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.-++|+|+.|||||||++.|++-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999763
No 314
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.00 E-value=0.00056 Score=64.54 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+.-++|+|+.|||||||++.|++
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999985
No 315
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.00 E-value=0.00058 Score=63.60 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.++.++|+|+.|||||||++.|++
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999875
No 316
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.00 E-value=0.00048 Score=65.34 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=28.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~ 450 (591)
+++|+|++||||||+++.|++.+.+.+.+|....
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 8999999999999999999998877665555443
No 317
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.99 E-value=0.00025 Score=66.10 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
...++|+|+.|||||||++.|++-.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999997643
No 318
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.98 E-value=0.0014 Score=61.67 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+...++|+|+.||||||+++.+++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445899999999999999999863
No 319
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.98 E-value=0.00043 Score=63.65 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
|.+.+|+||||+||||+|..|+..+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999999655
No 320
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.97 E-value=0.00048 Score=65.96 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|+.||||||+++.|++
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999985
No 321
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.97 E-value=0.0015 Score=65.81 Aligned_cols=23 Identities=17% Similarity=0.246 Sum_probs=20.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++|+|..|||||||++.|+|.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 322
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.96 E-value=0.00066 Score=63.00 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|+.||||||+++.|++-
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999863
No 323
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.96 E-value=0.00015 Score=68.27 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|+.|||||||++.|.+-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 347999999999999999999864
No 324
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.96 E-value=0.00039 Score=74.50 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=26.4
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCC
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK 443 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~ 443 (591)
+..|+ +++|+||||+||||+|..|++++.+..
T Consensus 23 ~~~~~--~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 23 FGESN--FTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp CTTCS--EEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred ecCCC--EEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 34566 999999999999999999999887643
No 325
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.96 E-value=0.00056 Score=64.99 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHHh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
++..++|+|+.||||||+++.+++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345799999999999999999985
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.96 E-value=0.00044 Score=65.98 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.9
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
+.+|. +++|+|++||||||+++.|++.+.
T Consensus 18 ~~~~~--~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 18 GSKTF--IIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp SCCCE--EEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCCe--EEEEECCCCCCHHHHHHHHHHhcC
Confidence 34555 999999999999999999998763
No 327
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.95 E-value=0.00058 Score=65.22 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..-++|+|+.||||||+++.+++-
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 347899999999999999999863
No 328
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.94 E-value=0.00094 Score=66.14 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=80.3
Q ss_pred eEEEEEcc-CCCcHHHHHHHHHhhhhcCCcEEEEccccccee-----eeecchhhhhhh-------------cccceeec
Q 007747 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-----GAVEQLRTHARR-------------LQVPIFEK 476 (591)
Q Consensus 416 ~ii~LvGp-NGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Ri-----gaveQl~~~~~~-------------l~v~l~~~ 476 (591)
++|+|++. -|+||||+...||..+...+.+|+++.+|.... |.-. ...+.+. -++.+...
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~~-~~~l~~~l~~~~~~~~i~~~~~l~vlp~ 85 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRA-ERGVYHLLQGEPLEGLVHPVDGFHLLPA 85 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCC-SCCHHHHHTTCCGGGTCEEETTEEEECC
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCCC-CCCHHHHHcCCCHHHHccccCCEEEEeC
Confidence 38888854 579999999999998887788999999997421 1000 0011110 12222221
Q ss_pred CCCCCHHHHH-------HHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHH
Q 007747 477 GYEKDPAIVA-------KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (591)
Q Consensus 477 ~~~~d~~~~a-------~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~ 549 (591)
+....... ....+.+....||++++|++++.... ...+|. ..|.+|+|-+|.. ........
T Consensus 86 --~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~~--~~~~l~------~aD~viiv~~~~~--~s~~~~~~ 153 (257)
T 1wcv_1 86 --TPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPL--TLNALA------AAEGVVVPVQAEY--YALEGVAG 153 (257)
T ss_dssp --CTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCHH--HHHHHH------HCSEEEEEEESST--HHHHHHHH
T ss_pred --ChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCHH--HHHHHH------HCCeEEEEecCch--HHHHHHHH
Confidence 12221110 11112222256899999998875322 222333 4577887776643 22222333
Q ss_pred HHHHHHHhhcCC-CCccceEEEeccccc
Q 007747 550 FNQKLADLSSSP-NPQLIDGILLTKFDT 576 (591)
Q Consensus 550 f~~~L~~l~~~~-~~~~it~IIlTK~D~ 576 (591)
+.+.+..+.... ....+-++|+++++.
T Consensus 154 ~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 154 LLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 334454443221 223456799999886
No 329
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.94 E-value=0.0015 Score=67.36 Aligned_cols=95 Identities=14% Similarity=0.188 Sum_probs=38.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccc-cccccCCceEEEEEccCC
Q 007747 347 MTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH-AAKEQRKPYVVVFVGVNG 425 (591)
Q Consensus 347 l~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is-~~i~~Gep~ii~LvGpNG 425 (591)
..++++..-+.++++.+...+.. .|.+..... +....+..-......|+.+- --+++|+ ++.|.||+|
T Consensus 49 ~~~g~s~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~i~TG~~~LD~~L~GGl~~G~--i~~i~G~~G 117 (324)
T 2z43_A 49 VAAGIPLSTAQKIIKEARDALDI----RFKTALEVK-----KERMNVKKISTGSQALDGLLAGGIETRT--MTEFFGEFG 117 (324)
T ss_dssp ---------------------------CCCCHHHHH-----HHHCSCCEECCSCHHHHHHTTTSEETTS--EEEEEESTT
T ss_pred HhhCCCHHHHHHHHHHHHhhccc----Cccchhhhh-----hhhccCCcccCCchhHHHhcCCCCCCCc--EEEEECCCC
Confidence 34677777777777777654321 233333221 11111000001122233322 2456888 999999999
Q ss_pred CcHHHHHHHHHhhh-hcC-----CcEEEEcccc
Q 007747 426 VGKSTNLAKVAYWL-LQH-----KVSVMMAACD 452 (591)
Q Consensus 426 sGKTTlL~kLAg~l-~~~-----~G~V~i~~~D 452 (591)
+||||++..|+... .+. ++.|.+...+
T Consensus 118 sGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 118 SGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 99999999999754 332 5566555443
No 330
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.93 E-value=0.0011 Score=59.76 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
-++|+|+.||||||+++.+++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999998753
No 331
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.92 E-value=0.00042 Score=66.58 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=30.3
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCc--EEEEcc
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV--SVMMAA 450 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G--~V~i~~ 450 (591)
.|. +++|+|++||||||+.+.|+..+.+..| .+.+.+
T Consensus 24 ~~~--~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 24 RGL--TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp SCE--EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 455 9999999999999999999999886555 555543
No 332
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.92 E-value=0.001 Score=66.35 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=31.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R 455 (591)
+.+|+|+|++||||||+.+.|+..+...+..+.+...|.+|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 44899999999999999999998876555555544556543
No 333
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.91 E-value=0.0037 Score=62.82 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=34.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
++|+|.|.-|+||||+..-||..+...+.+|+++.+|..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 477888999999999999999988877889999999974
No 334
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.91 E-value=0.004 Score=64.26 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=24.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcC
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQH 442 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~ 442 (591)
.++|+||+|+||||+++.+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999988765
No 335
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.91 E-value=0.0017 Score=69.77 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg 437 (591)
.++|||..+||||||++.|++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~ 23 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVK 23 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999986
No 336
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.91 E-value=0.0063 Score=65.49 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=38.4
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc-CCcEEEEcccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACD 452 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~-~~G~V~i~~~D 452 (591)
..|+.+.--+.+|. ++.|.|++|+||||++..||..... .+..|++....
T Consensus 188 ~~LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp HHHHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred HhhhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34555554567898 9999999999999999999976654 45577776654
No 337
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.90 E-value=0.00025 Score=66.31 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.||||||+++.+++-
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 338
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.90 E-value=0.00019 Score=66.91 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..-++|+|+.||||||+++.|++-
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999863
No 339
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.90 E-value=0.00068 Score=62.91 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.||||||+++.+++-
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 340
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.88 E-value=0.00095 Score=74.26 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=21.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++|+|..|||||||++.|.|.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999975
No 341
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.88 E-value=0.0022 Score=60.74 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|+.||||||+++.+++
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 34799999999999999999975
No 342
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.00037 Score=66.24 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|+.||||||+++.|++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 34799999999999999999986
No 343
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.86 E-value=0.00039 Score=77.99 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=45.4
Q ss_pred cccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCC-cEEEEccccc----ceeeeecc
Q 007747 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VSVMMAACDT----FRSGAVEQ 461 (591)
Q Consensus 400 ~~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~-G~V~i~~~Dt----~RigaveQ 461 (591)
..+++.+++.+..|+ .++|+||||+||||+++.|++++.+.. +.+.+.+... -.++++++
T Consensus 47 ~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~ 111 (604)
T 3k1j_A 47 EHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPA 111 (604)
T ss_dssp HHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEET
T ss_pred hhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEec
Confidence 345677788888888 899999999999999999999998776 6666654332 13555544
No 344
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.85 E-value=0.0011 Score=61.30 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++|+|+.||||||+++.|++-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999763
No 345
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.84 E-value=0.0027 Score=66.20 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=38.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccc-cccccCCceEEEEEccCC
Q 007747 347 MTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH-AAKEQRKPYVVVFVGVNG 425 (591)
Q Consensus 347 l~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~~~~~~iL~~is-~~i~~Gep~ii~LvGpNG 425 (591)
..++++..-+.++++.+...+. ..|.+..... +...++..-......|+.+- --++.|+ ++.|+||+|
T Consensus 64 ~~~~is~~~~~~~~~~a~~~~~----~~~~~~~~~~-----~~~~~~~~i~TG~~~LD~~LgGGl~~G~--i~~I~G~~G 132 (343)
T 1v5w_A 64 NVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS-----EKRKMVFHITTGSQEFDKLLGGGIESMA--ITEAFGEFR 132 (343)
T ss_dssp --------------------------CCSEEHHHHH-----HHGGGCCCBCCSCHHHHHHTTSSBCSSE--EEEEECCTT
T ss_pred HhhCCCHHHHHHHHHHHHhhcc----cCCCcHHHHH-----hhhcccceeecCChhHHHHhcCCCCCCe--EEEEECCCC
Confidence 3467888888888887765432 1243333222 11111111011122233322 2456788 999999999
Q ss_pred CcHHHHHHHHHhhh-hc-----CCcEEEEccc
Q 007747 426 VGKSTNLAKVAYWL-LQ-----HKVSVMMAAC 451 (591)
Q Consensus 426 sGKTTlL~kLAg~l-~~-----~~G~V~i~~~ 451 (591)
+||||++..||... .+ .++.|.+...
T Consensus 133 sGKTtla~~la~~~~~~~~~gg~~~~vlyi~~ 164 (343)
T 1v5w_A 133 TGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT 164 (343)
T ss_dssp CTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES
T ss_pred CCHHHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 99999999999753 33 3556655543
No 346
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.83 E-value=0.0025 Score=73.42 Aligned_cols=73 Identities=21% Similarity=0.234 Sum_probs=42.1
Q ss_pred CcchhccchhHH-------H--HHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEE
Q 007747 499 DVVLVDTAGRMQ-------D--NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 499 d~vliDtSGg~~-------q--r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (591)
+++++||+|-.. . ...+-..+.+++. ...|++|+|-++..+....+.. ..+..+...+ ....+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g---~pvIl 222 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDAL----KIAKEVDPQG---QRTIG 222 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHH----HHHHHHCTTC---SSEEE
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcC---CCEEE
Confidence 477999999433 0 1112222222222 6789999988888765443321 2334444332 34679
Q ss_pred EeccccccCC
Q 007747 570 LLTKFDTIDD 579 (591)
Q Consensus 570 IlTK~D~i~d 579 (591)
++||+|.+..
T Consensus 223 VlNKiDlv~~ 232 (772)
T 3zvr_A 223 VITKLDLMDE 232 (772)
T ss_dssp EEECTTSSCT
T ss_pred EEeCcccCCc
Confidence 9999999743
No 347
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.83 E-value=0.002 Score=69.24 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.+..++|||..|||||||++.|++-
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 348
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.82 E-value=0.0016 Score=61.61 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.2
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+.+|.+|+|+|+.||||||+.+.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4456799999999999999999998654
No 349
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.82 E-value=0.0005 Score=62.98 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+.-++|+|+.||||||+++.+++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999875
No 350
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.81 E-value=0.00013 Score=69.71 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+.-++|+|+.|||||||++.|++
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999998874
No 351
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.79 E-value=0.00082 Score=62.93 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=5.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++|+|+.|||||||++.|++-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998754
No 352
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.77 E-value=0.00076 Score=63.78 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
...++|||+.|||||||++.+++
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999864
No 353
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.77 E-value=0.00099 Score=63.88 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=30.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
++.++|+|..||||||+++.++..+... .++.+.+.|..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 4589999999999999999999876544 56666666653
No 354
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.76 E-value=0.0018 Score=60.62 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.-++|+|+.||||||+++.+++-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999863
No 355
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.76 E-value=0.00095 Score=63.80 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..-++|+|+.|||||||++.+++.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999874
No 356
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.76 E-value=0.00092 Score=73.55 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=37.6
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.++.++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.+.+.
T Consensus 54 ~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred hhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 4567777776554 88999999999999999999874 56777777665
No 357
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.00025 Score=73.29 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=32.0
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcE
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS 445 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~ 445 (591)
+++.++..+..|+...+.|.||+|+||||+++.|++.+.+..+.
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 34444455556662228999999999999999999987665543
No 358
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.75 E-value=0.0014 Score=69.78 Aligned_cols=134 Identities=15% Similarity=0.075 Sum_probs=67.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCC-cEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~-G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~ 493 (591)
...++++|..|+|||||++.|++...... +... . .++....... ................ ..
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~---~---~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~ 70 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE---T---NIGVCESCKK-PEAYVTEPSCKSCGSD----------DE 70 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE---E---EEEECTTSCT-TTTEESSSCCGGGTCC----------SC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccc---c---ceeecccccc-ccceeccccccccccc----------cc
Confidence 34899999999999999999998543321 1110 0 0111100000 0000000000000000 00
Q ss_pred hhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC-CHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN-DAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 494 ~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl-D~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
......+.++||+|.........+.+ ...|.+|||-+++.+. .+... ..+ ..+..+.. ..-.+++|
T Consensus 71 ~~~~~~~~iiDtPGh~~~~~~~~~~~------~~~D~~ilVvda~~~~~~~qt~-~~~-~~~~~~~~-----~~iivviN 137 (403)
T 3sjy_A 71 PKFLRRISFIDAPGHEVLMATMLSGA------ALMDGAILVVAANEPFPQPQTR-EHF-VALGIIGV-----KNLIIVQN 137 (403)
T ss_dssp CEEEEEEEEEECCCCGGGHHHHHHHH------TTCSEEEEEEETTSCSSCHHHH-HHH-HHHHHHTC-----CCEEEEEE
T ss_pred ccccceEEEEECCCcHHHHHHHHHHH------hhCCEEEEEEECCCCCCcHHHH-HHH-HHHHHcCC-----CCEEEEEE
Confidence 00113577899999655443333333 5789998888888876 43332 212 23322211 12358899
Q ss_pred cccccC
Q 007747 573 KFDTID 578 (591)
Q Consensus 573 K~D~i~ 578 (591)
|+|.+.
T Consensus 138 K~Dl~~ 143 (403)
T 3sjy_A 138 KVDVVS 143 (403)
T ss_dssp CGGGSC
T ss_pred Cccccc
Confidence 999853
No 359
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.75 E-value=0.0016 Score=71.01 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=40.0
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCC-------CCHHHHHHHHHHHHHHhhcCCCCccceEE
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-------NDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~G-------lD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (591)
+..+.++||+|-.+......+.+ ...|.+|||-+++.| ...... +.+..+...+ ...-.+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~------~~aD~~llVvDa~~g~~~~~~~~~~qt~-----e~~~~~~~~~--~~~iIv 176 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGI------SQADMAILCVDCSTNAFESGFDLDGQTK-----EHMLLASSLG--IHNLII 176 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHH------TTCSEEEEEEECCC------CCCCHHHH-----HHHHHHHHTT--CCCEEE
T ss_pred CceEEEEECCCcHHHHHHHHHhh------hhCCEEEEEEECCCCccccccchhhhHH-----HHHHHHHHcC--CCcEEE
Confidence 34678999999765443333333 588999888888876 333322 1122222211 112357
Q ss_pred EeccccccC
Q 007747 570 LLTKFDTID 578 (591)
Q Consensus 570 IlTK~D~i~ 578 (591)
+++|+|...
T Consensus 177 viNK~Dl~~ 185 (483)
T 3p26_A 177 AMNKMDNVD 185 (483)
T ss_dssp EEECGGGGT
T ss_pred EEECcCccc
Confidence 899999864
No 360
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.74 E-value=0.00056 Score=75.78 Aligned_cols=67 Identities=21% Similarity=0.134 Sum_probs=44.0
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
++.+.++||+|-........+.+. ..|.+|+|-+++.|...... . .+..+.... ....++++|+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~------~aD~allVvDa~~g~~~~t~-~----~~~~~~~~~---iPiivviNK~Dl 146 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLT------AVDSALMVIDAAKGVEPRTI-K----LMEVCRLRH---TPIMTFINKMDR 146 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGG------GCSEEEEEEETTTCSCHHHH-H----HHHHHHTTT---CCEEEEEECTTS
T ss_pred CEEEEEEECCCchhHHHHHHHHHH------hCCEEEEEEeCCCCCCHHHH-H----HHHHHHHcC---CCEEEEEeCCCC
Confidence 345789999997654444444443 78999888899999876653 2 233333322 235689999998
Q ss_pred c
Q 007747 577 I 577 (591)
Q Consensus 577 i 577 (591)
.
T Consensus 147 ~ 147 (528)
T 3tr5_A 147 D 147 (528)
T ss_dssp C
T ss_pred c
Confidence 5
No 361
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.74 E-value=0.00099 Score=61.26 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=9.9
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
..++|+|+.||||||+++.+++
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999874
No 362
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.73 E-value=0.0051 Score=70.25 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=42.6
Q ss_pred CCcchhccchhHHH--HHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHH-hhcCCCCccceEEEeccc
Q 007747 498 SDVVLVDTAGRMQD--NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD-LSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 498 ~d~vliDtSGg~~q--r~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~-l~~~~~~~~it~IIlTK~ 574 (591)
.++.++||+|-... ...++.... .+.|++|+|-+++.+....+. . .+.. +.... ....+|+||+
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i-----~~aD~vL~Vvda~~~~s~~e~-~----~l~~~l~~~~---~~iiiVlNK~ 240 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYV-----NNCHAILFVMRASQPCTLGER-R----YLENYIKGRG---LTVFFLVNAW 240 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHH-----HSSSEEEEEEETTSTTCHHHH-H----HHHHHTTTSC---CCEEEEEECG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHH-----HhCCEEEEEEeCCCccchhHH-H----HHHHHHHhhC---CCEEEEEECc
Confidence 46889999996542 223333333 578999998888888765543 2 2222 22221 2267899999
Q ss_pred cccCC
Q 007747 575 DTIDD 579 (591)
Q Consensus 575 D~i~d 579 (591)
|.+.+
T Consensus 241 Dl~~~ 245 (695)
T 2j69_A 241 DQVRE 245 (695)
T ss_dssp GGGGG
T ss_pred ccccc
Confidence 98643
No 363
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.71 E-value=0.004 Score=59.95 Aligned_cols=128 Identities=20% Similarity=0.237 Sum_probs=73.0
Q ss_pred EEEEE-ccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhh--hhcccceeecCCCCCHHHHHHHHHHHh
Q 007747 417 VVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA--RRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (591)
Q Consensus 417 ii~Lv-GpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~--~~l~v~l~~~~~~~d~~~~a~~al~~~ 493 (591)
+|+|+ +--|+||||+..-||..+...+ +|++..+|..... ..+. +.+...+... + .++.+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~-----~~~~~~~~l~~~vi~~----~-------~l~~l 64 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA-----TGWGKRGSLPFKVVDE----R-------QAAKY 64 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH-----HHHHHHSCCSSEEEEG----G-------GHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH-----HHHhcCCCCCcceeCH----H-------HHHHh
Confidence 56665 4568999999999999888777 9999999975311 0111 0111111110 0 23333
Q ss_pred hhcCCCcchhccchh-HHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 494 TRNGSDVVLVDTAGR-MQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 494 ~~~~~d~vliDtSGg-~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
...+|++++|++++ ... ....+. ...|.+|+|-+|.. ....... ..+..+.... ... -++|++
T Consensus 65 -~~~yD~viiD~p~~~~~~---~~~~~l-----~~aD~viiv~~~~~--~~~~~~~---~~~~~l~~~~-~~~-~~vv~N 128 (209)
T 3cwq_A 65 -APKYQNIVIDTQARPEDE---DLEALA-----DGCDLLVIPSTPDA--LALDALM---LTIETLQKLG-NNR-FRILLT 128 (209)
T ss_dssp -GGGCSEEEEEEECCCSSS---HHHHHH-----HTSSEEEEEECSSH--HHHHHHH---HHHHHHHHTC-SSS-EEEEEC
T ss_pred -hhcCCEEEEeCCCCcCcH---HHHHHH-----HHCCEEEEEecCCc--hhHHHHH---HHHHHHHhcc-CCC-EEEEEE
Confidence 24689999999988 432 222233 36788888777643 1122222 3333333311 112 468999
Q ss_pred ccccc
Q 007747 573 KFDTI 577 (591)
Q Consensus 573 K~D~i 577 (591)
+++.-
T Consensus 129 ~~~~~ 133 (209)
T 3cwq_A 129 IIPPY 133 (209)
T ss_dssp SBCCT
T ss_pred ecCCc
Confidence 99874
No 364
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.70 E-value=0.005 Score=63.06 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=59.3
Q ss_pred HHHHHHhccCccCChhchHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCC
Q 007747 318 SSMFQSIAGKANLDKADLEPALKALKDRLM-TKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396 (591)
Q Consensus 318 ~~~~~~l~g~~~l~~~dl~~~l~~i~~~Ll-~~~V~~~ia~~l~~~v~~~l~g~~~~~~~~~~~~v~~~l~~~L~~il~~ 396 (591)
..+.+.|.....-|-+++.. .-...|. ..+++.+-+.++++.+++.+.. .|.+.....+ ....+..-
T Consensus 13 ~~~~~kL~~~gi~t~~~~~~---~~~~~L~~~~gis~~~a~~~i~~a~~~~~~----~~~~~~~~~~-----~~~~~~~i 80 (322)
T 2i1q_A 13 PSTAEKLVEAGYIDFMKIAT---ATVGELTDIEGISEKAAAKMIMGARDLCDL----GFKSGIDLLK-----QRSTVWKL 80 (322)
T ss_dssp HHHHHHHHHHTCCSHHHHHT---CCHHHHHTSTTCCHHHHHHHHHHHHHHTTC----SCCCTHHHHH-----HHTTCCEE
T ss_pred HHHHHHHHHcCCCcHHHHHh---CCHHHHHHhhCcCHHHHHHHHHHHHHhhhh----cCCcHHHHHH-----HhccCCee
Confidence 34455555444444444322 1122233 4689999999999988776431 2433333221 11111000
Q ss_pred CCccccccccc-cccccCCceEEEEEccCCCcHHHHHHHHHhh
Q 007747 397 RRSIDILRDVH-AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 397 ~~~~~iL~~is-~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
......|+.+- --+++|+ ++.|.|++|+||||++..++.-
T Consensus 81 ~TG~~~LD~~l~GGl~~g~--i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 81 STSSSELDSVLGGGLESQS--VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CCSCHHHHHHTTSSEETTE--EEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCChhHHHhcCCCccCCe--EEEEECCCCCCHHHHHHHHHHH
Confidence 01122333322 2356788 9999999999999999999863
No 365
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.66 E-value=0.0027 Score=72.48 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=44.9
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
++.+.++||+|.........+++. ..|.+|+|-+++.|...... ..+ ..+.... ....++++|+|.
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~------~aD~~ilVvDa~~g~~~~t~-~~~----~~~~~~~---~p~ivviNKiD~ 141 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMR------VLDGAIVVFDSSQGVEPQSE-TVW----RQAEKYK---VPRIAFANKMDK 141 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHH------HCSEEEEEEETTTCSCHHHH-HHH----HHHHHTT---CCEEEEEECTTS
T ss_pred CeEEEEEECcCccchHHHHHHHHH------HCCEEEEEEECCCCcchhhH-HHH----HHHHHcC---CCEEEEEECCCc
Confidence 456789999997654555555555 57888888889988876553 223 2222221 334588999998
Q ss_pred cC
Q 007747 577 ID 578 (591)
Q Consensus 577 i~ 578 (591)
..
T Consensus 142 ~~ 143 (691)
T 1dar_A 142 TG 143 (691)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 366
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.66 E-value=0.001 Score=64.13 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
|.+.+|+||||+||||++..|+..+-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34999999999999999999986543
No 367
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.65 E-value=0.0044 Score=67.68 Aligned_cols=68 Identities=22% Similarity=0.179 Sum_probs=42.6
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
+..+.++||+|-... ...+..-. ...|.+|||-+++.|..+.... .+..+...+ +.+ .++++|+|.
T Consensus 72 ~~~i~iiDtPGh~~~-~~~~~~~~-----~~aD~~ilVvda~~g~~~qt~e-----~l~~~~~~~--ip~-IvviNK~Dl 137 (482)
T 1wb1_A 72 NYRITLVDAPGHADL-IRAVVSAA-----DIIDLALIVVDAKEGPKTQTGE-----HMLILDHFN--IPI-IVVITKSDN 137 (482)
T ss_dssp TEEEEECCCSSHHHH-HHHHHHHT-----TSCCEEEEEEETTTCSCHHHHH-----HHHHHHHTT--CCB-CEEEECTTS
T ss_pred CEEEEEEECCChHHH-HHHHHHHH-----hhCCEEEEEEecCCCccHHHHH-----HHHHHHHcC--CCE-EEEEECCCc
Confidence 345788999996543 23333333 6889998888898887665532 222222222 233 699999998
Q ss_pred cC
Q 007747 577 ID 578 (591)
Q Consensus 577 i~ 578 (591)
..
T Consensus 138 ~~ 139 (482)
T 1wb1_A 138 AG 139 (482)
T ss_dssp SC
T ss_pred cc
Confidence 63
No 368
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.64 E-value=0.0019 Score=73.72 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=44.5
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
++.+.++||+|-..-.....++|. ..|.+|+|-+++.|....+. ..+ ..+.... ....++++|+|.
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~------~aD~~llVvDa~~g~~~~~~-~~~----~~~~~~~---~p~ilviNK~Dl 139 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLR------VLDGAVTVLDAQSGVEPQTE-TVW----RQATTYG---VPRIVFVNKMDK 139 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHH------HCSEEEEEEETTTBSCHHHH-HHH----HHHHHTT---CCEEEEEECTTS
T ss_pred CeeEEEEECcCCcchHHHHHHHHH------HCCEEEEEECCCCCCcHHHH-HHH----HHHHHcC---CCEEEEEECCCc
Confidence 356789999997654444555555 57888888889988876553 223 2222222 335589999998
Q ss_pred cC
Q 007747 577 ID 578 (591)
Q Consensus 577 i~ 578 (591)
..
T Consensus 140 ~~ 141 (693)
T 2xex_A 140 LG 141 (693)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 369
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.63 E-value=0.0049 Score=66.43 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcC
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQH 442 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~ 442 (591)
..+.|.||+|+||||++..|++.+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 378999999999999999999877543
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.63 E-value=0.00063 Score=64.73 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=28.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~ 449 (591)
+|+|+|++||||||+++.|+..+...+..|.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 789999999999999999999988766666654
No 371
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.63 E-value=0.0016 Score=68.39 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQ 441 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~ 441 (591)
.++|||++|+|||||++.|.+....
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC-
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999775433
No 372
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.63 E-value=0.0035 Score=63.06 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=31.5
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.+.|+||+|+||||+++.|+..+.+.++.+...+|..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 7999999999999999999999888777666665554
No 373
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.62 E-value=0.007 Score=57.96 Aligned_cols=33 Identities=12% Similarity=-0.018 Sum_probs=28.8
Q ss_pred EEEEEcc-CCCcHHHHHHHHHhhhhcCCcEEEEc
Q 007747 417 VVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMA 449 (591)
Q Consensus 417 ii~LvGp-NGsGKTTlL~kLAg~l~~~~G~V~i~ 449 (591)
+++|+|. .|+||||+..-||..+...+.+|++.
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 7888887 58999999999999888888899884
No 374
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.59 E-value=0.0006 Score=64.41 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+.-++|+|+.||||||+++.+++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999986
No 375
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.59 E-value=0.0038 Score=66.27 Aligned_cols=128 Identities=16% Similarity=0.036 Sum_probs=66.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc--ccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--ACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~--~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~ 493 (591)
..++++|..|+|||||++.|++.....+...... ..|... .++ .-++.+..... .+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e~------~~giTi~~~~~-------------~~ 61 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAP---EER------ARGITINAAHV-------------EY 61 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCC---EEE------ETTEEEECEEE-------------EE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCH---HHH------hcCcEEEeeeE-------------Ee
Confidence 3689999999999999999997643322110000 001000 000 00111100000 00
Q ss_pred hhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 494 ~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
...+..+.++||+|-..... .+..-. ...|.+|||-+++.|..+... +. +..+...+ +..-.+++||
T Consensus 62 ~~~~~~~~iiDtpG~~~f~~-~~~~~~-----~~aD~~ilVvda~~g~~~qt~-e~----l~~~~~~~--vp~iivviNK 128 (397)
T 1d2e_A 62 STAARHYAHTDCPGHADYVK-NMITGT-----APLDGCILVVAANDGPMPQTR-EH----LLLARQIG--VEHVVVYVNK 128 (397)
T ss_dssp ECSSCEEEEEECSSHHHHHH-HHHHTS-----SCCSEEEEEEETTTCSCHHHH-HH----HHHHHHTT--CCCEEEEEEC
T ss_pred ccCCeEEEEEECCChHHHHH-HHHhhH-----hhCCEEEEEEECCCCCCHHHH-HH----HHHHHHcC--CCeEEEEEEC
Confidence 11235678999999765322 222222 688999988889988765443 22 22222221 1112478999
Q ss_pred ccccC
Q 007747 574 FDTID 578 (591)
Q Consensus 574 ~D~i~ 578 (591)
+|...
T Consensus 129 ~Dl~~ 133 (397)
T 1d2e_A 129 ADAVQ 133 (397)
T ss_dssp GGGCS
T ss_pred cccCC
Confidence 99864
No 376
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.59 E-value=0.0028 Score=66.34 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=41.3
Q ss_pred CCcchhccchhHHH---H----HHHHHHHHhchhcCCCcEEEEEecccCC--CCHHHHHHHHHHHHHHhhcCCCCccceE
Q 007747 498 SDVVLVDTAGRMQD---N----EPLMRALSKLIYLNNPDLVLFVGEALVG--NDAVDQLSKFNQKLADLSSSPNPQLIDG 568 (591)
Q Consensus 498 ~d~vliDtSGg~~q---r----~~LaraL~kl~~~~~PdlILLVDEPt~G--lD~~~q~~~f~~~L~~l~~~~~~~~it~ 568 (591)
....++||+|-... . ..+.+.+ ...+++|+|-+.+.. -++......+...|..+..... ...-.
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i------~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~-~~p~i 278 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHI------ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT-ERPQI 278 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHH------HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT-TSCBC
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHH------HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhc-CCCEE
Confidence 35678899885321 1 1122222 246777776666652 6677666555555555432111 12345
Q ss_pred EEeccccccC
Q 007747 569 ILLTKFDTID 578 (591)
Q Consensus 569 IIlTK~D~i~ 578 (591)
+++||+|...
T Consensus 279 lV~NK~Dl~~ 288 (342)
T 1lnz_A 279 IVANKMDMPE 288 (342)
T ss_dssp BEEECTTSTT
T ss_pred EEEECccCCC
Confidence 8999999853
No 377
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.58 E-value=0.0013 Score=61.86 Aligned_cols=72 Identities=14% Similarity=0.275 Sum_probs=39.3
Q ss_pred CCcchhccchhHHHHHHHH--HHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccc
Q 007747 498 SDVVLVDTAGRMQDNEPLM--RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (591)
Q Consensus 498 ~d~vliDtSGg~~qr~~La--raL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (591)
+.+.+.||+|..+.+.... .... .+.+.+|+|-+.+... ......+...+..+.... ....-.++.+|+|
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~-----~~~~~~i~v~d~~~~~--~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 140 (196)
T 3llu_A 69 VNFQIWDFPGQMDFFDPTFDYEMIF-----RGTGALIYVIDAQDDY--MEALTRLHITVSKAYKVN-PDMNFEVFIHKVD 140 (196)
T ss_dssp CCEEEEECCSSCCTTCTTCCHHHHH-----HTCSEEEEEEETTSCC--HHHHHHHHHHHHHHHHHC-TTCEEEEEEECGG
T ss_pred eEEEEEECCCCHHHHhhhhhccccc-----ccCCEEEEEEECCCch--HHHHHHHHHHHHHHHhcC-CCCcEEEEEeccc
Confidence 4677889998654222110 2222 3678888777777652 222333444454442111 1234468899999
Q ss_pred cc
Q 007747 576 TI 577 (591)
Q Consensus 576 ~i 577 (591)
.+
T Consensus 141 l~ 142 (196)
T 3llu_A 141 GL 142 (196)
T ss_dssp GS
T ss_pred cC
Confidence 64
No 378
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.58 E-value=0.001 Score=63.04 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=20.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.+|+|+|+|||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999999
No 379
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.57 E-value=0.00025 Score=66.00 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHH
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVA 436 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLA 436 (591)
+..++|+|+.||||||+++.++
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999884
No 380
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.56 E-value=0.001 Score=68.85 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=59.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~ 493 (591)
++..|+|+|..|||||||++.|.+-. +. .... +. ++.+...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~------~~-~~~p-----------T~----~~~~~~~----------------- 204 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGE------IV-TTIP-----------TI----GFNVETV----------------- 204 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSC------CE-EEEE-----------ET----TEEEEEE-----------------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCC------CC-Cccc-----------cc----ceEEEEE-----------------
Confidence 44579999999999999999885321 10 0000 11 0111100
Q ss_pred hhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecc
Q 007747 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (591)
Q Consensus 494 ~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (591)
...+..+.++||+|....+. +..... ...+.+|+|-+++...........+...+. ........-.++++|
T Consensus 205 ~~~~~~l~i~Dt~G~~~~~~-~~~~~~-----~~ad~vilV~D~~~~~s~~~~~~~~~~~~~---~~~~~~~piilV~NK 275 (329)
T 3o47_A 205 EYKNISFTVWDVGGQDKIRP-LWRHYF-----QNTQGLIFVVDSNDRERVNEAREELMRMLA---EDELRDAVLLVFANK 275 (329)
T ss_dssp EETTEEEEEEECC-----CC-SHHHHH-----TTEEEEEEEEETTCSSSHHHHHHHHHHHHT---CGGGTTCEEEEEEEC
T ss_pred ecCcEEEEEEECCCCHhHHH-HHHHHh-----ccCCEEEEEEECCchHHHHHHHHHHHHHHh---hhccCCCeEEEEEEC
Confidence 01234567899999654332 233334 578888888777654333332222222221 111112345688999
Q ss_pred ccccC
Q 007747 574 FDTID 578 (591)
Q Consensus 574 ~D~i~ 578 (591)
+|...
T Consensus 276 ~Dl~~ 280 (329)
T 3o47_A 276 QDLPN 280 (329)
T ss_dssp TTSTT
T ss_pred ccCCc
Confidence 99754
No 381
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.56 E-value=0.0027 Score=67.51 Aligned_cols=130 Identities=16% Similarity=0.135 Sum_probs=67.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccccee-eeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-GAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Ri-gaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~ 494 (591)
..++++|..|+|||||++.|++.....+.. ..|.. ..+++... ....++.+..... .+.
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~------~~~~~~~~~d~~~~-e~~~GiTi~~~~~-------------~~~ 71 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPN------VEVKDYGDIDKAPE-ERARGITINTAHV-------------EYE 71 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTT------SCCCCHHHHSCSHH-HHHHTCCCSCEEE-------------EEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCcc------ccccchhhccCCHH-HHHcCCCEEeeee-------------Eec
Confidence 479999999999999999999864432210 00100 00111100 0001111100000 001
Q ss_pred hcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 495 ~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
..+..+.++||+|-........+. . ...|.+|||-+++.|...... . .+..+...+. ..-.++++|+
T Consensus 72 ~~~~~~~iiDtpG~~~f~~~~~~~-~-----~~aD~~ilVvda~~g~~~qt~-~----~l~~~~~~~i--p~iivviNK~ 138 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYIKNMITG-A-----AQMDGAILVVSAADGPMPQTR-E----HILLARQVGV--PYIVVFMNKV 138 (405)
T ss_dssp CSSCEEEEEECCCSGGGHHHHHHH-H-----TTCSSEEEEEETTTCCCHHHH-H----HHHHHHHTTC--CCEEEEEECG
T ss_pred cCCeEEEEEECCChHHHHHHHHHH-H-----HHCCEEEEEEECCCCCcHHHH-H----HHHHHHHcCC--CEEEEEEECc
Confidence 123567899999976543333333 3 588888888889888765432 2 2222222211 1124789999
Q ss_pred cccC
Q 007747 575 DTID 578 (591)
Q Consensus 575 D~i~ 578 (591)
|...
T Consensus 139 Dl~~ 142 (405)
T 2c78_A 139 DMVD 142 (405)
T ss_dssp GGCC
T ss_pred cccC
Confidence 9863
No 382
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.54 E-value=0.0027 Score=62.27 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=31.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccccee
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Ri 456 (591)
+|++|.|+||.||||+|..+.|+-.+ |-+.|...|.+|.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~----g~~hIstGdllR~ 66 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF----HFNHLSSGDLLRA 66 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH----CCEEECHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----CCceEcHHHHHHH
Confidence 46699999999999999999999765 3456777787773
No 383
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.52 E-value=0.0011 Score=63.36 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.9
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
+|. +++|+||+||||||+++.|+..+.
T Consensus 11 ~~~--~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIP--PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCC--CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCC--EEEEECCCCCCHHHHHHHHHHhCc
Confidence 556 999999999999999999998763
No 384
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.52 E-value=0.0014 Score=61.55 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.9
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhh
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
++++....+. +|+|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~--~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGI--NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSC--EEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCC--EEEEECCCCCCHHHHHHHHHHh
Confidence 4566666666 9999999999999999999876
No 385
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.51 E-value=0.026 Score=58.75 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=35.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
+.++.+-|.-|+||||+...+|..+...+.+|+++.+|.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 348888999999999999999998888888999999995
No 386
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.51 E-value=0.00042 Score=65.43 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHHh
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
++..++|+|+.||||||+++.+++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 344799999999999999988864
No 387
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.49 E-value=0.0013 Score=60.17 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
..++|+|++||||||+++.|++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998753
No 388
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.48 E-value=0.016 Score=59.63 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=34.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.++.+-|.-|+||||+...||..+...+.+|+++.+|.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 47788899999999999999998888888999999997
No 389
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.46 E-value=0.012 Score=63.70 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=39.2
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.-|+.+.--+.+|. ++.|.|++|+||||++..||......+..|++.....
T Consensus 185 ~~LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 185 TELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp HHHHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred HHHHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34555444567888 9999999999999999999876554577888877654
No 390
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.46 E-value=0.0024 Score=68.91 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=27.1
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCC
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~Gl 541 (591)
+....++||+|-.+......+.+ ..+|.+|||-+++.|.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~------~~aD~~ilVVDa~~g~ 132 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGA------SQADLAVLVISARKGE 132 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhH------hhCCEEEEEEECCCCc
Confidence 44678999999665433333333 4789998888888774
No 391
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.46 E-value=0.002 Score=60.98 Aligned_cols=36 Identities=31% Similarity=0.312 Sum_probs=29.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~ 451 (591)
..+.|.||+|+||||++..|+..+...+..+.+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 378999999999999999999988776666655443
No 392
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.45 E-value=0.0065 Score=69.51 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=44.0
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
.+.+.++||+|...-.....++|. ..|.+|+|-+++.|...... .. +....... ....++++|+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~------~aD~aIlVvDa~~gv~~qt~-~~----~~~~~~~~---ip~ilviNKiD~ 146 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMR------VLDGAVMVYCAVGGVQPQSE-TV----WRQANKYK---VPRIAFVNKMDR 146 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHH------HCCEEEEEEeCCCCCcHHHH-HH----HHHHHHcC---CCEEEEEeCCCc
Confidence 367889999997654555555555 67888888889988755432 22 22222221 234588999998
Q ss_pred cC
Q 007747 577 ID 578 (591)
Q Consensus 577 i~ 578 (591)
..
T Consensus 147 ~~ 148 (704)
T 2rdo_7 147 MG 148 (704)
T ss_pred cc
Confidence 54
No 393
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.45 E-value=0.0076 Score=63.39 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=33.3
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~ 451 (591)
+++|. ++.|.|++|+||||++..++......++.|++...
T Consensus 60 l~~G~--ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45788 99999999999999999999877666777776654
No 394
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.41 E-value=0.014 Score=61.71 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=34.4
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
++.|. ++.|.|+.|+||||++..++......++.|++...+.
T Consensus 71 l~~G~--li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 71 IPRGR--ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCc--EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45788 9999999999999999999876666677888876653
No 395
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.37 E-value=0.0017 Score=59.93 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|++|||||||++.|++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 396
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.36 E-value=0.0019 Score=59.27 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R 455 (591)
|.+|+|+|++||||||+.+.|+.. ..|-+.+. .|.+|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~-~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK---NPGFYNIN-RDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH---STTEEEEC-HHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh---cCCcEEec-HHHHH
Confidence 458999999999999999999872 12334443 46544
No 397
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.35 E-value=0.0054 Score=61.80 Aligned_cols=114 Identities=22% Similarity=0.206 Sum_probs=65.0
Q ss_pred eEEEEEcc-CCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeec--chh-hhhhh----c--cc-ceeecC----CCC
Q 007747 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE--QLR-THARR----L--QV-PIFEKG----YEK 480 (591)
Q Consensus 416 ~ii~LvGp-NGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Rigave--Ql~-~~~~~----l--~v-~l~~~~----~~~ 480 (591)
++|+|++. -|+||||+..-||..+...+.+|+++.+|..+...-. ... .+.+. + ++ .+...+ ...
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~~ 84 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAER 84 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTTS
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcCh
Confidence 37888754 5799999999999998888889999999983211111 000 01000 0 11 111100 000
Q ss_pred CH---HHHHHHHHHHhhhcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEeccc
Q 007747 481 DP---AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (591)
Q Consensus 481 d~---~~~a~~al~~~~~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt 538 (591)
.. .....+.++.+. ..+|++++|++++.- .....+. ...|.+|+|-+|.
T Consensus 85 ~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~---~~~~~~l-----~~aD~viiv~~~~ 136 (286)
T 2xj4_A 85 PEEEQVAGFEAAFARAM-AECDFILIDTPGGDS---AITRMAH-----GRADLVVTPMNDS 136 (286)
T ss_dssp CHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCC---HHHHHHH-----HTCSEEEEEEESS
T ss_pred hhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCcc---HHHHHHH-----HHCCEEEEEEcCC
Confidence 00 113344454443 468999999998862 2233333 3668888877764
No 398
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.33 E-value=0.0099 Score=63.79 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=41.1
Q ss_pred CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 498 ~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
..+.++||+|-.+......+. . ..+|.+|||-+++.|.-+... ..+ ..+. ..+ ...-.++++|+|..
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~-~-----~~aD~~ilVvDa~~g~~~qt~-~~l-~~~~---~~~--~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATG-A-----STCDLAIILVDARYGVQTQTR-RHS-YIAS---LLG--IKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHH-H-----TTCSEEEEEEETTTCSCHHHH-HHH-HHHH---HTT--CCEEEEEEECTTTT
T ss_pred ceEEEEECCChHHHHHHHHHH-H-----hhCCEEEEEEECCCCCcHHHH-HHH-HHHH---HcC--CCeEEEEEEcCcCC
Confidence 357789999966543333333 3 589999888889888755442 111 2222 111 11235789999986
Q ss_pred C
Q 007747 578 D 578 (591)
Q Consensus 578 ~ 578 (591)
.
T Consensus 171 ~ 171 (434)
T 1zun_B 171 G 171 (434)
T ss_dssp T
T ss_pred c
Confidence 4
No 399
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0025 Score=61.23 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.-++|+|+.|||||||++.|++-
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 400
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.31 E-value=0.0018 Score=68.20 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=28.5
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
.+++.+.+|+...++|+|++|+||||+.+.||+.+.
T Consensus 14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 444555677755699999999999999999997653
No 401
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.30 E-value=0.0012 Score=63.06 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHH
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVA 436 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLA 436 (591)
...++|+|+.||||||+++.+.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999843
No 402
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.30 E-value=0.012 Score=56.67 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=31.5
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhh-hhcCCcEEEEcccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMAACD 452 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~-l~~~~G~V~i~~~D 452 (591)
+++|. ++.|.|++|+||||++..+|.- ....+..|++...+
T Consensus 27 l~~G~--l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGT--TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTC--EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 56888 9999999999999999887743 34445667776654
No 403
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.24 E-value=0.0078 Score=61.52 Aligned_cols=121 Identities=16% Similarity=0.159 Sum_probs=64.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~~ 496 (591)
-++|+|+.||||||+++.+.+-..+... +. +..-.++.+..... ..
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~~~~~~-------~~-----------~~~Ti~~~~~~~~~----------------~~ 50 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDT-------RR-----------LGATIDVEHSHLRF----------------LG 50 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCCCTGGG-------GG-----------CCCCCSEEEEEEEE----------------TT
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCccc-------cC-----------cCCccceEEEEEEe----------------CC
Confidence 6899999999999999998754221100 00 00000111100000 01
Q ss_pred CCCcchhccchhHHHHH----HHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEec
Q 007747 497 GSDVVLVDTAGRMQDNE----PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~----~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (591)
+....++||+|...... .+..... .+++.+++|-+++... ....+..+...+..+.... ....-.++++
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~-----~~ad~vi~V~D~t~~~-s~~~l~~~~~~l~~l~~~~-~~~piilv~N 123 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFMENYFTKQKDHIF-----QMVQVLIHVFDVESTE-VLKDIEIFAKALKQLRKYS-PDAKIFVLLH 123 (307)
T ss_dssp TEEEEEEEECCSHHHHHHHHTTTHHHHH-----TTCSEEEEEEETTCSC-HHHHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred ceEEEEEECCCcHHHhhhhhhhHHHHHh-----ccCCEEEEEEECCChh-hHHHHHHHHHHHHHHHHhC-CCCeEEEEEe
Confidence 23567889998765422 2233333 6889988888877653 2222333334444443221 1234568899
Q ss_pred cccccC
Q 007747 573 KFDTID 578 (591)
Q Consensus 573 K~D~i~ 578 (591)
|+|...
T Consensus 124 K~Dl~~ 129 (307)
T 3r7w_A 124 KMDLVQ 129 (307)
T ss_dssp CGGGSC
T ss_pred cccccc
Confidence 999854
No 404
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.22 E-value=0.0016 Score=62.37 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.-++|+|+.|||||||++.+++
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999999986
No 405
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.22 E-value=0.0026 Score=58.00 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999765
No 406
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.19 E-value=0.0018 Score=64.10 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=34.3
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.|+ -.+.+.|+.|+||||+...++..+...+.+|.+...|+
T Consensus 4 ~g~-l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGR-LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCC-EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred Cce-EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 454 35888999999999999999988877777898888876
No 407
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.19 E-value=0.0022 Score=60.31 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhh
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
++|.+|+|+|+.||||||+.+.|+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45779999999999999999999875
No 408
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.19 E-value=0.029 Score=58.50 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=34.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.++.+-|.-|+||||+...||..+...+.+|+++.+|.
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36777789999999999999998888888999999997
No 409
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.19 E-value=0.001 Score=72.90 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++|+|++|||||||++.|++-
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC
Confidence 37999999999999999999875
No 410
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.19 E-value=0.0032 Score=67.73 Aligned_cols=38 Identities=24% Similarity=0.175 Sum_probs=30.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhhh------------cCCcEEEEccc
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWLL------------QHKVSVMMAAC 451 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l~------------~~~G~V~i~~~ 451 (591)
.+..++|||++|||||||++.|+|... +..|.+.+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 356899999999999999999998753 44567776665
No 411
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.17 E-value=0.011 Score=59.08 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
..+.|.||+|+||||+++.|+..+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 389999999999999999999865
No 412
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.15 E-value=0.0029 Score=58.74 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+|+|+|++||||||+.+.|+..+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999755
No 413
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.13 E-value=0.00039 Score=65.53 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=19.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHH
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVA 436 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLA 436 (591)
+.-|+|+|+.||||||+++.|+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSB
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999998875
No 414
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.11 E-value=0.0041 Score=59.38 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=30.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.+.|.||+|+||||+++.|+..+...+..+.+..+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 8999999999999999999988776666666665543
No 415
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.09 E-value=0.0034 Score=58.44 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
|.+|+|+|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4599999999999999999999765
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.08 E-value=0.0043 Score=57.47 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=26.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~ 449 (591)
+|+|+|+.||||||+.+.|+..+...+..+.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 799999999999999999998876444444433
No 417
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.03 E-value=0.0036 Score=58.04 Aligned_cols=25 Identities=40% Similarity=0.440 Sum_probs=22.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQ 441 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~ 441 (591)
+|+|+|+.||||||+.+.|+..+..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999987653
No 418
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.01 E-value=0.12 Score=64.26 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=35.2
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D 452 (591)
+.+|+ ++.|.||+|+||||++..+|......+++|++...+
T Consensus 729 l~~G~--lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 729 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred cCCCc--eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 56888 999999999999999999998877777788776544
No 419
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0042 Score=57.62 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
|.+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998654
No 420
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.96 E-value=0.0097 Score=59.35 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
..++|+|++|||||||++.|+|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998753
No 421
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=95.94 E-value=0.0037 Score=67.89 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=61.2
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~~ 495 (591)
..++|+|..|||||||++.|.+-.... ...| . ++.+... ..
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~~-------~~~T-----------~----~~~~~~~-----------------~~ 363 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPT-----------V----GFNVETV-----------------TY 363 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCC-------CCCC-----------S----SEEEEEE-----------------ES
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCC-------cCCc-----------c----ceeEEEE-----------------Ee
Confidence 478999999999999999997632110 0001 0 1111000 01
Q ss_pred cCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCC-CccceEEEeccc
Q 007747 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKF 574 (591)
Q Consensus 496 ~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK~ 574 (591)
.++.+.++||+|....+. +.... ..+.+.+|+|-+.+......... ..+..+..... .-..-.++++|+
T Consensus 364 ~~~~~~l~Dt~G~~~~~~-~~~~~-----~~~ad~~i~V~D~~~~~s~~~~~----~~~~~~~~~~~~~~~p~ilv~NK~ 433 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRP-LWRHY-----YTGTQGLIFVVDCADRDRIDEAR----QELHRIINDREMRDAIILIFANKQ 433 (497)
T ss_dssp SSCEEEEEEECCCGGGSG-GGGGG-----GTTCCEEEEEEETTCGGGHHHHH----HHHHHHHTSGGGTTCEEEEEEECC
T ss_pred CCEEEEEEECCCcHHHHH-HHHHH-----hccCCEEEEEEECcchhHHHHHH----HHHHHHhhhhhcCCCcEEEEEECC
Confidence 235677899999554322 11212 26789988887777643322222 22223322111 113356899999
Q ss_pred ccc
Q 007747 575 DTI 577 (591)
Q Consensus 575 D~i 577 (591)
|..
T Consensus 434 Dl~ 436 (497)
T 3lvq_E 434 DLP 436 (497)
T ss_dssp SSS
T ss_pred CCC
Confidence 974
No 422
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.93 E-value=0.0039 Score=57.47 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.4
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
.+|.|+|+.||||||+.+.|+..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999997653
No 423
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=95.92 E-value=0.012 Score=61.98 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKVA 436 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLA 436 (591)
.++++|..++|||||++.|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999886
No 424
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.92 E-value=0.0047 Score=65.08 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=30.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~ 450 (591)
.++|+||+|+||||+++.|+..+...+++|.+..
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 6889999999999999999988888888887753
No 425
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.92 E-value=0.0042 Score=58.18 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
+|+|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998763
No 426
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.92 E-value=0.022 Score=59.73 Aligned_cols=40 Identities=30% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCceEEEEEc-cCCCcHHHHHHHHHhhhhcCCcEEEEcccc
Q 007747 413 RKPYVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (591)
Q Consensus 413 Gep~ii~LvG-pNGsGKTTlL~kLAg~l~~~~G~V~i~~~D 452 (591)
+.+++|+|+| --|+||||+...||..+...+.+|++..+|
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3456999996 678999999999998887777799999998
No 427
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.91 E-value=0.013 Score=61.88 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=33.6
Q ss_pred CceEEEEE-ccCCCcHHHHHHHHHhhhh------cCCcEEEEcccccc
Q 007747 414 KPYVVVFV-GVNGVGKSTNLAKVAYWLL------QHKVSVMMAACDTF 454 (591)
Q Consensus 414 ep~ii~Lv-GpNGsGKTTlL~kLAg~l~------~~~G~V~i~~~Dt~ 454 (591)
.+++|+|+ |--|+||||+...||..+. ..+.+|+++.+|..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 45688888 5567999999999998876 35789999999973
No 428
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=95.90 E-value=0.012 Score=61.66 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=32.5
Q ss_pred EEEEE-ccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 417 VVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 417 ii~Lv-GpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
+|+|+ +--|+||||+..-||..+-..+.+|+++.+|..
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q 41 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ 41 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 66666 556799999999999888878889999999974
No 429
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.89 E-value=0.0019 Score=70.93 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=28.9
Q ss_pred cccccccccccCCceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 402 iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.++++++.+.+| +.+|+|+||+||||+|..|++++
T Consensus 50 ~~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG---FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS---EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC---eEEEEcCCCCCHHHHHHHHHHHh
Confidence 456677776555 89999999999999999998763
No 430
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.85 E-value=0.0099 Score=57.95 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=20.9
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.|+ .++++||+||||||++..++.
T Consensus 75 ~g~--~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 75 QNS--VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HCS--EEEEECCTTSSHHHHHHHHHH
T ss_pred cCC--EEEEEeCCCCCcHHhHHHHHh
Confidence 567 999999999999999887764
No 431
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.85 E-value=0.0048 Score=59.17 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
|.+|+|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999987
No 432
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.83 E-value=0.007 Score=56.99 Aligned_cols=30 Identities=27% Similarity=0.627 Sum_probs=25.3
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEE
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V 446 (591)
.+|+|+|+.||||||+.+.|+..+...+ .|
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~ 34 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DV 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE
Confidence 3899999999999999999998776543 44
No 433
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.80 E-value=0.044 Score=57.37 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=34.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhh--cCCcEEEEccccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDT 453 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~--~~~G~V~i~~~Dt 453 (591)
.++.+.|.-|+||||+...||..+. ..+.+|+++.+|.
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 4899999999999999999998887 7888999999985
No 434
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.80 E-value=0.007 Score=56.45 Aligned_cols=31 Identities=32% Similarity=0.588 Sum_probs=25.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEE
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 447 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~ 447 (591)
+|+|.|+.||||||+.+.|+..+...+..|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999999999999988866555554
No 435
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.79 E-value=0.012 Score=64.77 Aligned_cols=68 Identities=6% Similarity=0.056 Sum_probs=38.9
Q ss_pred CCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccc
Q 007747 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (591)
Q Consensus 497 ~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~ 576 (591)
+....+.||+|....+. +...+. .+++++|+|-+++...+. ..+...+..+.. ...-.++.||+|.
T Consensus 97 ~~~~~i~Dt~G~e~~~~-~~~~~l-----~~~d~ii~V~D~s~~~~~----~~~~~~l~~~~~----~~pvilV~NK~Dl 162 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHA-SHQFFM-----TRSSVYMLLLDSRTDSNK----HYWLRHIEKYGG----KSPVIVVMNKIDE 162 (535)
T ss_dssp TCEEEEECCCSCCTTTT-TCHHHH-----HSSEEEEEEECGGGGGGH----HHHHHHHHHHSS----SCCEEEEECCTTT
T ss_pred eEEEEEEECCcHHHHHH-HHHHHc-----cCCcEEEEEEeCCCchhH----HHHHHHHHHhCC----CCCEEEEEECCCc
Confidence 34577899998443222 222223 468888888877765322 223333443332 1234689999998
Q ss_pred cC
Q 007747 577 ID 578 (591)
Q Consensus 577 i~ 578 (591)
..
T Consensus 163 ~~ 164 (535)
T 3dpu_A 163 NP 164 (535)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 436
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.75 E-value=0.0048 Score=55.79 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=18.3
Q ss_pred EEEEEccCCCcHHHHHHHH
Q 007747 417 VVVFVGVNGVGKSTNLAKV 435 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kL 435 (591)
+|+|+||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999998
No 437
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.75 E-value=0.0073 Score=59.60 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.5
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.+.|.+|+|.|+.||||||+.+.|+..+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467799999999999999999998754
No 438
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.74 E-value=0.0055 Score=57.17 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.+|+|+|+.||||||+.+.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999999999765
No 439
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.74 E-value=0.0047 Score=64.90 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
.+.+|+|+||+||||+|-.|+.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999999986
No 440
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.73 E-value=0.0061 Score=56.42 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
|.+|+|+|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999998765
No 441
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.73 E-value=0.0077 Score=64.33 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=30.9
Q ss_pred ccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhc
Q 007747 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (591)
Q Consensus 405 ~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~ 441 (591)
|+.+.+.+|+ .++|+||+|+||||+++.|++++..
T Consensus 166 D~~~pi~rGQ--r~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 166 DLASPIGRGQ--RGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HHHSCCBTTC--EEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeeeeecCCc--EEEEecCCCCChhHHHHHHHHHHhh
Confidence 5666777899 9999999999999999999998764
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.72 E-value=0.0064 Score=59.36 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+.+++|+|++||||||+.+.|+..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3399999999999999999999754
No 443
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.69 E-value=0.0059 Score=57.08 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+|+|+|+.||||||+.+.|+..+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999766
No 444
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.68 E-value=0.0061 Score=60.64 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+++|+||+||||||+.+.||..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 78999999999999999999865
No 445
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.68 E-value=0.0062 Score=56.53 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+|+|+|+.||||||+.+.|+..+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999765
No 446
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.66 E-value=0.0076 Score=63.83 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=26.9
Q ss_pred CceEEEEE-ccCCCcHHHHHHHHHhhhh------cCCcEEEEcccccc
Q 007747 414 KPYVVVFV-GVNGVGKSTNLAKVAYWLL------QHKVSVMMAACDTF 454 (591)
Q Consensus 414 ep~ii~Lv-GpNGsGKTTlL~kLAg~l~------~~~G~V~i~~~Dt~ 454 (591)
.+++|+|+ |--|+||||+...||..+. ..+.+|+++.+|..
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 45588888 5668999999999998876 46789999999973
No 447
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.66 E-value=0.0079 Score=56.94 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=25.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEE
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V 446 (591)
.+|+|+|+.||||||+.+.|+..+...+..|
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3999999999999999999998775444444
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.59 E-value=0.0066 Score=60.22 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
|.+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999999655
No 449
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.57 E-value=0.0058 Score=56.49 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+|+|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68899999999999999999765
No 450
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.57 E-value=0.017 Score=56.82 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=31.3
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~ 449 (591)
+|. ++.+.|+.|+||||++-.++..+...+.+|++.
T Consensus 11 ~G~--i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGW--IEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCE--EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcE--EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 466 999999999999999999998877777788877
No 451
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.56 E-value=0.012 Score=55.90 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=28.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEc
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~ 449 (591)
|. ++.+.||.|+||||++..++..+...+.+|++.
T Consensus 3 g~--i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GK--LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CC--EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cE--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 55 899999999999999988887666666777774
No 452
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.55 E-value=0.0071 Score=67.86 Aligned_cols=66 Identities=20% Similarity=0.107 Sum_probs=40.4
Q ss_pred CcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccccccC
Q 007747 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (591)
Q Consensus 499 d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i~ 578 (591)
.+.++||+|-..-.....+ .....|.+|||-+++.|..+.+. . .+..+.... ..-.++++|+|...
T Consensus 71 ~i~liDTPGhe~F~~~~~r------~~~~aD~aILVvDa~~Gv~~qT~-e----~l~~l~~~~---vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKR------GGALADLAILIVDINEGFKPQTQ-E----ALNILRMYR---TPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTTSBCS------SSBSCSEEEEEEETTTCCCHHHH-H----HHHHHHHTT---CCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHHHHHH------HHhhCCEEEEEEECCCCccHhHH-H----HHHHHHHcC---CeEEEEeccccccc
Confidence 4678999996432111111 12468999998999999876553 2 233333322 23569999999853
No 453
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.54 E-value=0.0077 Score=61.70 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcC
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQH 442 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~ 442 (591)
+..++|.||+|+||||+++.++..+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3489999999999999999999887664
No 454
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.52 E-value=0.0087 Score=56.58 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.1
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
...|.+|+|+|+.||||||+.+.|+..+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445699999999999999999999765
No 455
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.51 E-value=0.0045 Score=63.10 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=27.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccc
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~ 454 (591)
+.+|+|.||.||||||+.+.|+..+...+.++.+...|-|
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4599999999999999999999866543444666666653
No 456
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.51 E-value=0.0076 Score=55.84 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+|+|+|+.||||||+.+.|+..+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999654
No 457
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.50 E-value=0.007 Score=56.91 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=21.9
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+|+|+|+.||||||+.+.|+..+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999876
No 458
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.50 E-value=0.024 Score=71.27 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=34.1
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D 452 (591)
+++|+ ++.|+||.|+||||+...++.-....++++.+...+
T Consensus 1424 i~~g~--~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp EETTS--EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 55677 999999999999999999987766678888877654
No 459
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=95.49 E-value=0.021 Score=60.57 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.7
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++++|..|+|||||++.|.|.
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~ 33 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGV 33 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 460
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.49 E-value=0.0098 Score=56.23 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=25.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEE
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V 446 (591)
.+|+|+|+.||||||+.+.|+..+......+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3999999999999999999998765433333
No 461
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.49 E-value=0.018 Score=64.72 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=45.3
Q ss_pred CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 498 ~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
+.+.++||+|-..-.....+.|. ..|.+|||-+++.|..+... ..+..++ ... ..-.++++|+|..
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~------~aD~aILVVDa~~gv~~qt~-~~~~~a~----~~~---ipiIvviNKiDl~ 138 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALA------ACEGALLLIDASQGIEAQTV-ANFWKAV----EQD---LVIIPVINKIDLP 138 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHH------TCSEEEEEEETTTBCCHHHH-HHHHHHH----HTT---CEEEEEEECTTST
T ss_pred EEEEEEECCCcHhHHHHHHHHHH------hCCEEEEEEECCCCccHHHH-HHHHHHH----HCC---CCEEEEEeccCcc
Confidence 45678999998776666666665 67888888889999877553 3332222 221 2356899999985
Q ss_pred C
Q 007747 578 D 578 (591)
Q Consensus 578 ~ 578 (591)
.
T Consensus 139 ~ 139 (600)
T 2ywe_A 139 S 139 (600)
T ss_dssp T
T ss_pred c
Confidence 4
No 462
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=95.49 E-value=0.022 Score=61.12 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++++|..|+|||||++.|.+.
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 463
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.48 E-value=0.11 Score=54.35 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=33.2
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhh--cCCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~--~~~G~V~i~~~Dt 453 (591)
++.+-|--|+||||+...||..+. ..+.+|+++.+|.
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 667778899999999999998887 7888999999997
No 464
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.46 E-value=0.0067 Score=58.10 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.|+|+||+||||||+++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987543
No 465
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.41 E-value=0.0082 Score=59.01 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=26.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
-+.|+||+|+||||+++.|++.+... -+.+.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 58899999999999999999876421 345554443
No 466
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.40 E-value=0.0068 Score=64.77 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
.++|||++|||||||++.|++.
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999986
No 467
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.39 E-value=0.0075 Score=61.49 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=28.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~ 451 (591)
.+.|.||+|+||||+++.|+..+.+.+..+....+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 68899999999999999999988766555554443
No 468
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.39 E-value=0.014 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.8
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~ 441 (591)
..+.|+||.|+||||+++.++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 37889999999999999999987654
No 469
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.36 E-value=0.011 Score=54.81 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=25.0
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEE
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V 446 (591)
+|+|+|+.||||||+.+.|+..+...+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~ 31 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFV 31 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 689999999999999999998875544433
No 470
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.31 E-value=0.0077 Score=57.94 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
|.+|+|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44899999999999999999997663
No 471
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.28 E-value=0.0095 Score=58.73 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=28.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccce
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~R 455 (591)
.|.+|+|+||.||||||+.+.|+..+ |-..+..-|+.|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~----g~~~is~~~~~r 65 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH----CYCHLSTGDLLR 65 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH----CCEEEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEecHHHHH
Confidence 45589999999999999999998655 334454445544
No 472
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.26 E-value=0.0088 Score=57.83 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
|.+|+|+|+.||||||+.+.|+..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3489999999999999999999654
No 473
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.25 E-value=0.013 Score=65.84 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=44.8
Q ss_pred CCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEecccccc
Q 007747 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (591)
Q Consensus 498 ~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D~i 577 (591)
+.+.++||+|-........+.|. ..|.+|||-+++.|..+... ..+..++ ... ..-.++++|+|..
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~------~aD~aILVVDa~~gv~~qt~-~~~~~~~----~~~---ipiIvViNKiDl~ 136 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLA------ACEGALLVVDAGQGVEAQTL-ANCYTAM----EMD---LEVVPVLNKIDLP 136 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHH------HCSEEEEEEETTTCCCTHHH-HHHHHHH----HTT---CEEEEEEECTTST
T ss_pred EEEEEEECCCchHHHHHHHHHHH------HCCEEEEEEECCCCCCHHHH-HHHHHHH----HCC---CCEEEeeeccCcc
Confidence 45678999998766666666665 56888888889998876553 2232222 221 2356899999985
Q ss_pred C
Q 007747 578 D 578 (591)
Q Consensus 578 ~ 578 (591)
.
T Consensus 137 ~ 137 (599)
T 3cb4_D 137 A 137 (599)
T ss_dssp T
T ss_pred c
Confidence 4
No 474
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=95.25 E-value=0.0095 Score=64.14 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.0
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHh
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+....++|+|..|+|||||++.|.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~ 56 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVG 56 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHc
Confidence 3445899999999999999988765
No 475
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.24 E-value=0.014 Score=56.87 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=29.9
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEE
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i 448 (591)
.|. +|+|.|+.||||||.++.|+.++...+..|.+
T Consensus 5 ~g~--~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 5 TGL--FVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp CCE--EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred Cce--EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 355 99999999999999999999999877666654
No 476
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=95.24 E-value=0.0032 Score=69.82 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=63.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccccceeeeecchhhhhhhcccceeecCCCCCHHHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~RigaveQl~~~~~~l~v~l~~~~~~~d~~~~a~~al~~~~ 494 (591)
|..++|+|..|+|||||++.|.+-..... . .+.+.| .++...+. .
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~----------~-~~giT~------~i~~~~v~--~---------------- 48 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM----------E-AGGITQ------HIGAFLVS--L---------------- 48 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS----------S-SCCBCC------CTTSCCBC--S----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc----------c-CCceeE------EEeEEEEE--e----------------
Confidence 44789999999999999999986432110 0 000000 00000000 0
Q ss_pred hcCCCcchhccchhHHHHHHHHHHHHhchhcCCCcEEEEEecccCCCCHHHHHHHHHHHHHHhhcCCCCccceEEEeccc
Q 007747 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (591)
Q Consensus 495 ~~~~d~vliDtSGg~~qr~~LaraL~kl~~~~~PdlILLVDEPt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (591)
..+..+.++||+|.........+ .....|.+|||-+++.|.-+... +.+..+..... .-.++++|+
T Consensus 49 ~~g~~i~~iDTPGhe~f~~~~~~------~~~~aD~vILVVDa~dg~~~qt~-----e~l~~~~~~~v---PiIVViNKi 114 (537)
T 3izy_P 49 PSGEKITFLDTPGHAAFSAMRAR------GTQVTDIVILVVAADDGVMKQTV-----ESIQHAKDAHV---PIVLAINKC 114 (537)
T ss_dssp SCSSCCBCEECSSSCCTTTSBBS------SSBSBSSCEEECBSSSCCCHHHH-----HHHHHHHTTTC---CEEECCBSG
T ss_pred CCCCEEEEEECCChHHHHHHHHH------HHccCCEEEEEEECCCCccHHHH-----HHHHHHHHcCC---cEEEEEecc
Confidence 01234678999994321111111 12467888888889888877553 23333333322 246889999
Q ss_pred ccc
Q 007747 575 DTI 577 (591)
Q Consensus 575 D~i 577 (591)
|..
T Consensus 115 Dl~ 117 (537)
T 3izy_P 115 DKA 117 (537)
T ss_dssp GGT
T ss_pred ccc
Confidence 985
No 477
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.24 E-value=0.0064 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
|.+|+|+|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4599999999999999999998654
No 478
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.21 E-value=0.044 Score=58.51 Aligned_cols=28 Identities=39% Similarity=0.420 Sum_probs=23.7
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
...|.+|+|+|++||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456799999999999999999998644
No 479
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.18 E-value=0.018 Score=55.97 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=19.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+-|+|||..|||||||+..++.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 5689999999999999998864
No 480
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.15 E-value=0.011 Score=55.47 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+|+|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999865
No 481
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.13 E-value=0.028 Score=61.29 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=37.9
Q ss_pred ccccccccccccCCceEEEEEccCCCcHHHHHHHHHhhhhcC-CcEEEEccccc
Q 007747 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDT 453 (591)
Q Consensus 401 ~iL~~is~~i~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~-~G~V~i~~~Dt 453 (591)
.-|+.+.--+.+|+ ++.|.|++|+||||++.-||...... +..|++...+.
T Consensus 230 ~~LD~~lgGl~~G~--l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 230 TGINDKTLGARGGE--VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TTHHHHHCCCCTTC--EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred hhhhHhhcccCCCe--EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 34444433467888 99999999999999999998665544 66788776553
No 482
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.13 E-value=0.015 Score=60.82 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=26.5
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccc
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt 453 (591)
.+|+|+||+||||||+...|+..+. +.+..+|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceecccc
Confidence 4899999999999999999997663 34555554
No 483
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.12 E-value=0.012 Score=59.46 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.5
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg 437 (591)
++.|++|+|+|+.||||||+.+.|+.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999999984
No 484
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.09 E-value=0.017 Score=56.34 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=28.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHHhhhhcCCc-EEE
Q 007747 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVM 447 (591)
Q Consensus 413 Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G-~V~ 447 (591)
|. +|+|.|+.||||||.++.|+.++...+. .|.
T Consensus 3 g~--~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~ 36 (213)
T 4tmk_A 3 SK--YIVIEGLEGAGKTTARNVVVETLEQLGIRDMV 36 (213)
T ss_dssp CC--EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred Ce--EEEEECCCCCCHHHHHHHHHHHHHHcCCCcce
Confidence 55 9999999999999999999999887665 453
No 485
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.09 E-value=0.012 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHHh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg 437 (591)
+..++|+|+.||||||+++.|++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999986
No 486
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.08 E-value=0.012 Score=56.42 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.1
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
.+|+|+|+.||||||+.+.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999999766
No 487
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=95.00 E-value=0.0029 Score=71.01 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEccCCCcHHHHHHHHHhhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
..++|||..++|||||++.|.+..
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Confidence 469999999999999999997643
No 488
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.95 E-value=0.014 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred eEEEEEccCCCcHHHHHHHHHhh
Q 007747 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 416 ~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
..++|+|+.||||||+++.+++-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 489
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.94 E-value=0.26 Score=51.20 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
|..+.|.||.|+||||+++.|+..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4489999999999999999999765
No 490
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.93 E-value=0.018 Score=57.08 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=26.6
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcE
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVS 445 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~ 445 (591)
+|+|.|+.||||||.++.|+.++...+.+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998876655
No 491
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.93 E-value=0.013 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHhhh
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l 439 (591)
+|+|+|+.||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999765
No 492
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.93 E-value=0.071 Score=55.50 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.9
Q ss_pred cccCCceEEEEEccCCCcHHHHHHHHHhh
Q 007747 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 410 i~~Gep~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+.+|. ++.|.||.|+||||+...++..
T Consensus 120 i~~gs--viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASG--MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESE--EEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCc--EEEEEcCCCCCHHHHHHHHHHh
Confidence 34566 8899999999999999999865
No 493
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.91 E-value=0.019 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhc
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQ 441 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~ 441 (591)
.+.|+||.|+||||+++.++..+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999987754
No 494
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=94.91 E-value=0.0057 Score=67.29 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
|.+++|+|..|+|||||+..|.+-
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~ 27 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRST 27 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999753
No 495
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.90 E-value=0.047 Score=57.95 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
...++++|..++|||||++.|.|.
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~ 31 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGV 31 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Confidence 347899999999999999999864
No 496
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.89 E-value=0.013 Score=59.05 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHHhh
Q 007747 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (591)
Q Consensus 415 p~ii~LvGpNGsGKTTlL~kLAg~ 438 (591)
+..++|+|++||||||+++.|+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999874
No 497
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.85 E-value=0.014 Score=56.60 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=29.4
Q ss_pred EEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEccccccee
Q 007747 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (591)
Q Consensus 417 ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~Dt~Ri 456 (591)
+|.|+||.||||+|..+.|+-.+ |=+.|.+.|.+|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g~~~istGdllR~ 37 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----GFVHISTGDILRE 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----CCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCeEEcHHHHHHH
Confidence 68899999999999999999765 3456777788773
No 498
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.83 E-value=0.015 Score=58.96 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=27.9
Q ss_pred ccCCceEEEEEccCCCcHHHHHHHHHhhhhcCCcEEEEcccc
Q 007747 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (591)
Q Consensus 411 ~~Gep~ii~LvGpNGsGKTTlL~kLAg~l~~~~G~V~i~~~D 452 (591)
..+. .+.|.||+|+||||+++.|+..+. ..-+.+.+.+
T Consensus 47 ~~~~--~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~ 84 (301)
T 3cf0_A 47 TPSK--GVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE 84 (301)
T ss_dssp CCCS--EEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHH
T ss_pred CCCc--eEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHH
Confidence 3455 899999999999999999998763 3334444433
No 499
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.81 E-value=0.012 Score=59.97 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=23.5
Q ss_pred cCCceEEEEEccCCCcHHHHHHHHHhhhh
Q 007747 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (591)
Q Consensus 412 ~Gep~ii~LvGpNGsGKTTlL~kLAg~l~ 440 (591)
.|.+..+.|.||+|+||||+++.|+..+.
T Consensus 55 ~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 55 SANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44322489999999999999999998764
No 500
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.81 E-value=0.0092 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHH
Q 007747 414 KPYVVVFVGVNGVGKSTNLAKVA 436 (591)
Q Consensus 414 ep~ii~LvGpNGsGKTTlL~kLA 436 (591)
++..++|+|++||||||+++.++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34589999999999999998885
Done!