Query 007748
Match_columns 591
No_of_seqs 132 out of 154
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 14:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08637 NCA2: ATP synthase re 100.0 6.6E-75 1.4E-79 594.6 24.2 261 316-581 19-290 (290)
2 PF13270 DUF4061: Domain of un 58.9 25 0.00054 31.5 5.6 54 158-215 32-85 (90)
3 KOG2546 Abl interactor ABI-1, 42.1 65 0.0014 36.3 6.6 68 361-434 15-85 (483)
4 PRK10755 sensor protein BasS/P 30.1 6.3E+02 0.014 26.1 14.3 70 336-418 82-155 (356)
5 PRK09467 envZ osmolarity senso 27.3 6.3E+02 0.014 26.7 11.2 70 336-418 174-247 (435)
6 TIGR01043 ATP_syn_A_arch ATP s 26.0 2.5E+02 0.0054 33.0 8.2 45 368-412 481-531 (578)
7 COG5000 NtrY Signal transducti 24.2 68 0.0015 37.9 3.3 31 454-484 83-117 (712)
8 PF03818 MadM: Malonate/sodium 23.9 1.7E+02 0.0036 24.7 4.6 18 442-459 1-18 (60)
9 PRK09470 cpxA two-component se 23.1 8.7E+02 0.019 25.7 11.3 68 338-418 189-261 (461)
10 PRK15321 putative type III sec 21.1 4.5E+02 0.0098 24.4 7.2 84 350-440 22-107 (120)
11 PF06109 HlyE: Haemolysin E (H 20.3 3.2E+02 0.0069 28.2 6.8 101 124-230 32-143 (299)
No 1
>PF08637 NCA2: ATP synthase regulation protein NCA2; InterPro: IPR013946 NCA2 (Nuclear Control of ATPase), is one of the two nuclear genes involved in the control of mitochondrial expression of subunits 6 and 8 of the Fo-F1 ATP synthase in Saccharomyces cerevisiae (Baker's yeast). Mutations in either NCA2 or NCA3 (IPR005556 from INTERPRO) dramatically lower the level of the co-transcript encoding subunits 6 and 8 [, ].
Probab=100.00 E-value=6.6e-75 Score=594.64 Aligned_cols=261 Identities=36% Similarity=0.542 Sum_probs=228.8
Q ss_pred ChhhHHHHHH-HHHHHHHHHhhhhhHHhhHhhHHHHHHHhhcc---CCCccchHHHhhchhHHHHHHHHHHhhccCCCCC
Q 007748 316 GSSDLENWIC-EAKDSMVGFFNDHVEQPLLSIRDELFETFRKR---HKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLP 391 (591)
Q Consensus 316 gs~~I~~wi~-~a~etv~~F~~nwV~ePl~~IrdeL~~T~R~~---~~~imsk~sL~sd~~SLeRMV~dF~~D~~~~~~~ 391 (591)
++++|.+|++ ++++|++|||+|||++|+++|+ +|+||+ +.++||+++|++|++||+|||+||++|+++.+..
T Consensus 19 ~r~~i~~wi~~~~~~t~~~f~~nwV~~Pl~~I~----~tlr~d~~s~~~i~s~~sL~~d~~SLeRMv~dF~~d~~~~~~~ 94 (290)
T PF08637_consen 19 NRDEIDNWIQENAVETVRGFWKNWVWEPLKSIW----DTLRHDEKSEIAIMSKESLQSDMESLERMVVDFAKDNSPNMPA 94 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 6799999999 8999999999999999999965 556664 4679999999999999999999999999875432
Q ss_pred CC-----cChhhHHHHHHHHHHHhhcchhhHhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHhhhHHHH
Q 007748 392 EN-----ASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFI 466 (591)
Q Consensus 392 ~~-----~se~~~Lt~Vm~~YE~eLk~Pikn~v~GdLvRaLLIQVQK~KVD~e~Am~gIDkLLKSqELnF~~vA~~PA~L 466 (591)
+. ..++|+||+||++||+||||||||+|+|+|+|+|||||||+|||+++||+|||||||||||||||||++|||+
T Consensus 95 ~~~~l~~~v~~Gdlt~Vm~~YE~el~~Pik~~v~G~LvR~LLIQvQK~KVD~~~Am~gID~LLkSneL~F~iva~~Pa~l 174 (290)
T PF08637_consen 95 DLEELRQQVREGDLTPVMKRYEKELKHPIKNIVRGDLVRALLIQVQKTKVDVEVAMSGIDKLLKSNELNFGIVAASPAFL 174 (290)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhHHHH
Confidence 11 1345789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcccccchhHHHHHHHH--HHHHHHHHHhhhccccccCcchhhhcccchhHHhHHHHHHHhhccC
Q 007748 467 LSFILLMLVRAWFKQDSRAEGRGRVARIQRRL--IIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHA 544 (591)
Q Consensus 467 i~~~l~~~vr~~~~~~~~~e~rgr~ar~~rr~--lL~~IERlL~~~~~~~~~~~~~~a~~~~GLLL~el~~L~~~v~~~~ 544 (591)
++|+++++++++++.+++..++++..+.++++ +|++|||+|+....+........+++++|+|+|++|+||+.+..+.
T Consensus 175 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ieRlL~~~~~~~~~~~~~~~~~~~GlLl~~~~~L~~~~~~~~ 254 (290)
T PF08637_consen 175 ISYGLYRWLRRLFKSRKGARRRRRQRRKQRRMRRSLRNIERLLNSSNNETPTQDGELSYKDHGLLLLELHRLRRSAERLL 254 (290)
T ss_pred HHHHHHHHHHHHHccCccccccchhhHHHHHHHHHHHHHHHHHhccccccccccccchHHhHhHHHHHHHHHHHHHHHhC
Confidence 99999999999999888877666766566655 7899999998665422334456678999999999999999988743
Q ss_pred CchhhHhhHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 007748 545 KETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMY 581 (591)
Q Consensus 545 ~~~~Ew~~f~eDL~DL~~~~l~v~~KL~Vv~Rm~~~Y 581 (591)
+..++.+|+|||+||++++.++++|++|++||||+|
T Consensus 255 -p~~~~~e~~eDl~dL~~~~~~~~~kl~vv~Rm~~~Y 290 (290)
T PF08637_consen 255 -PASERREWLEDLNDLADPRLGVSQKLRVVERMWRSY 290 (290)
T ss_pred -CHhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhC
Confidence 455566667999999999999999999999999999
No 2
>PF13270 DUF4061: Domain of unknown function (DUF4061)
Probab=58.86 E-value=25 Score=31.45 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCchhHHHHHHHHHhhhhHHhh
Q 007748 158 SERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASI 215 (591)
Q Consensus 158 ~~r~~~l~~~~~~la~~l~~v~~~~d~~~~~l~~~~~~sl~~~~~~~~~~~~~Le~~~ 215 (591)
=+.++-.+.+|+.|| ..|.++|...+...+.+++.-...-.+++.|+++||..-
T Consensus 32 ~eqM~~IReqQE~La----rlHfeL~~~~~~~~e~~~~~~~~~~~nm~~L~~~Le~Ls 85 (90)
T PF13270_consen 32 MEQMTKIREQQEKLA----RLHFELDSEQEEFREDSESNKTQSDENMDKLFSNLEQLS 85 (90)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHhhcccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 467888899999986 568888888877766666777778889999999999753
No 3
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=42.06 E-value=65 Score=36.33 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=46.1
Q ss_pred ccchHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHHHhhcc---hhhHhhhhhHHHHHHHHHHHH
Q 007748 361 VMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKELMH---PIQNLVNGELARALLIQVQKL 434 (591)
Q Consensus 361 imsk~sL~sd~~SLeRMV~dF~~D~~~~~~~~~~se~~~Lt~Vm~~YE~eLk~---Pikn~v~GdLvRaLLIQVQK~ 434 (591)
-+.+++|.+.-+-|+| |.|||+|+.-+.. .....++ ..+.|+.+=-. =..|.+.|+.+|+|-||-++.
T Consensus 15 p~gR~al~~s~~nL~r-VadycednYiQs~----~kk~ale-etk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L 85 (483)
T KOG2546|consen 15 PDGRKALRSSYDNLPR-VADYCEDNYIQSA----DKKAALE-ETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQL 85 (483)
T ss_pred cccHHHHHHHHHhhHh-hhhhhhhchhccc----cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3558899999999999 8999999865421 1223333 33444443222 245778899999999997764
No 4
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=30.13 E-value=6.3e+02 Score=26.07 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=39.1
Q ss_pred hhhhHHhhHhhHHHHHHHhhccCCC----ccchHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHHHhh
Q 007748 336 NDHVEQPLLSIRDELFETFRKRHKG----VMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKEL 411 (591)
Q Consensus 336 ~nwV~ePl~~IrdeL~~T~R~~~~~----imsk~sL~sd~~SLeRMV~dF~~D~~~~~~~~~~se~~~Lt~Vm~~YE~eL 411 (591)
..|+..|+..+.+.+ +.+..++.. .-+.+.+..-.+++.+|+...-... +....+....-+|+
T Consensus 82 ~~~~~~pl~~l~~~~-~~~~~~~~~~~~~~~~~~E~~~l~~~~n~~~~~l~~~~------------~~~~~~~~~~sHel 148 (356)
T PRK10755 82 VRWITRPLAELQKEL-EARTADNLTPIAIHSSTLEIEAVTSALNQLVSRLTSTL------------DQERLFTADVAHEL 148 (356)
T ss_pred HHHHHhHHHHHHHHH-HhcCcccCCccCCCCChHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhHhh
Confidence 568889999876543 333232211 1234455555566666665543322 11123556677899
Q ss_pred cchhhHh
Q 007748 412 MHPIQNL 418 (591)
Q Consensus 412 k~Pikn~ 418 (591)
|+|+..+
T Consensus 149 rtPL~~i 155 (356)
T PRK10755 149 RTPLAGI 155 (356)
T ss_pred cChHHHH
Confidence 9998764
No 5
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=27.27 E-value=6.3e+02 Score=26.71 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=38.6
Q ss_pred hhhhHHhhHhhHHHHHHHhhccCCC----ccchHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHHHhh
Q 007748 336 NDHVEQPLLSIRDELFETFRKRHKG----VMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKEL 411 (591)
Q Consensus 336 ~nwV~ePl~~IrdeL~~T~R~~~~~----imsk~sL~sd~~SLeRMV~dF~~D~~~~~~~~~~se~~~Lt~Vm~~YE~eL 411 (591)
..|+..|+..+.+.+ ..+..++.. .-.++++..=.+++.+|+..--+- .+.-..++..--+||
T Consensus 174 ~r~~~~pl~~l~~~~-~~~~~g~~~~~~~~~~~~Ei~~L~~~~n~m~~~l~~~------------~~~~~~~~~~lsHeL 240 (435)
T PRK09467 174 IRIQNRPLVALEHAA-LQVGKGEIPPPLREYGASEVRSVTRAFNQMAAGIKQL------------EDDRTLLMAGVSHDL 240 (435)
T ss_pred HHHHHhHHHHHHHHH-HHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhhc
Confidence 457889999887554 444443321 223455555556666665543211 011222444556899
Q ss_pred cchhhHh
Q 007748 412 MHPIQNL 418 (591)
Q Consensus 412 k~Pikn~ 418 (591)
|+|+..+
T Consensus 241 rtPL~~i 247 (435)
T PRK09467 241 RTPLTRI 247 (435)
T ss_pred cchHHHH
Confidence 9998865
No 6
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=25.99 E-value=2.5e+02 Score=33.02 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=29.0
Q ss_pred hhchhHHH--HHHH-HHHhhccCCCCCCCcC--h-hhHHHHHHHHHHHhhc
Q 007748 368 QMTSNSLH--RMLL-AFSEQTKGQKLPENAS--D-QEMLEIVMSRYEKELM 412 (591)
Q Consensus 368 ~sd~~SLe--RMV~-dF~~D~~~~~~~~~~s--e-~~~Lt~Vm~~YE~eLk 412 (591)
+.|..-|+ |++. +|.+|+.-+......+ + -.+|..++.-||+..+
T Consensus 481 ~~d~~il~~a~~i~e~FLqQ~~~~~~d~~~~~~k~~~~L~~i~~~~~~~~~ 531 (578)
T TIGR01043 481 ERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIMNFYDEAME 531 (578)
T ss_pred HHHHHHHHHhHHHHHhhCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46677777 8876 8998875433322222 2 2457788888888665
No 7
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=24.19 E-value=68 Score=37.86 Aligned_cols=31 Identities=23% Similarity=0.595 Sum_probs=23.9
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHH----HHhhcCcc
Q 007748 454 INFAVLAALPAFILSFILLMLVR----AWFKQDSR 484 (591)
Q Consensus 454 LnF~~vA~~PA~Li~~~l~~~vr----~~~~~~~~ 484 (591)
-.|++||++||+++..+..+.+. +||..+..
T Consensus 83 ~lFslvav~Pavivaifs~~~in~gld~WF~~kt~ 117 (712)
T COG5000 83 GLFSLVAVIPAVIVAIFSAQFINLGLDRWFSKKTQ 117 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH
Confidence 36999999999999877666554 79876543
No 8
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=23.94 E-value=1.7e+02 Score=24.70 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhhHHHH
Q 007748 442 MLELDQILRANEINFAVL 459 (591)
Q Consensus 442 m~gIDkLLKSqELnF~~v 459 (591)
|+.|.+.+..|.|+++|.
T Consensus 1 me~i~~vl~~ngLitaFa 18 (60)
T PF03818_consen 1 MEMIEKVLTKNGLITAFA 18 (60)
T ss_pred ChHHHHHHhhCchHHHHH
Confidence 567889999999998765
No 9
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=23.08 E-value=8.7e+02 Score=25.73 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=35.2
Q ss_pred hhHHhhHhhHHHHHHHhhccCCCc-----cchHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHHHhhc
Q 007748 338 HVEQPLLSIRDELFETFRKRHKGV-----MEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKELM 412 (591)
Q Consensus 338 wV~ePl~~IrdeL~~T~R~~~~~i-----msk~sL~sd~~SLeRMV~dF~~D~~~~~~~~~~se~~~Lt~Vm~~YE~eLk 412 (591)
.+..|++.+.+.+ ..+..++... ..++++..=.+++.+|+.....-. +....+.+.--+|++
T Consensus 189 ~i~~pl~~l~~~~-~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~------------~~~~~~~~~~shel~ 255 (461)
T PRK09470 189 SLAKPARKLKNAA-DEVAQGNLRQHPELETGPQEFRQAGASFNQMVTALERMM------------TSQQRLLSDISHELR 255 (461)
T ss_pred HHHHHHHHHHHHH-HHHhcCCCccccCCCCChHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhHhhC
Confidence 4567888776543 4455544221 124444444555555554332111 011224555678999
Q ss_pred chhhHh
Q 007748 413 HPIQNL 418 (591)
Q Consensus 413 ~Pikn~ 418 (591)
+|+.++
T Consensus 256 tpl~~i 261 (461)
T PRK09470 256 TPLTRL 261 (461)
T ss_pred CHHHHH
Confidence 998864
No 10
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=21.12 E-value=4.5e+02 Score=24.38 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=52.1
Q ss_pred HHHHhhccCCCccchHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhh--HHHHHHHHHHHhhcchhhHhhhhhHHHHH
Q 007748 350 LFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQE--MLEIVMSRYEKELMHPIQNLVNGELARAL 427 (591)
Q Consensus 350 L~~T~R~~~~~imsk~sL~sd~~SLeRMV~dF~~D~~~~~~~~~~se~~--~Lt~Vm~~YE~eLk~Pikn~v~GdLvRaL 427 (591)
.+.+++.-. ...|.+.++ ++..|-+.+|..-+.++..-.. -+|| ++..+++. .+--+|++-.+.|-||-.+
T Consensus 22 F~Q~l~~LP-~la~S~~~K---D~I~q~m~~F~dp~~G~pAF~s-~~QQ~~mlq~~l~k--~~~~t~L~E~L~GVlV~~~ 94 (120)
T PRK15321 22 FYQRLLALP-ESASSETLK---DSIYQEMNAFKDPNSGDSAFVS-FEQQTAMLQNMLAK--VEPGTHLYEALNGVLVGTM 94 (120)
T ss_pred HHHHHHhCC-cccCcHHHH---HHHHHHHHHhCCCCCCCccccc-HHHHHHHHHHHHHh--cCCCchHHHHHhhhHHhhc
Confidence 344455423 355656565 8888888888755544321111 1333 34444444 4447899999999999999
Q ss_pred HHHHHHHhhhHHH
Q 007748 428 LIQVQKLKLDIET 440 (591)
Q Consensus 428 LIQVQK~KVD~e~ 440 (591)
=.|-|-+|-=-++
T Consensus 95 N~Q~QM~sWMQe~ 107 (120)
T PRK15321 95 NAQSQMTSWMQEI 107 (120)
T ss_pred cHHHHHHHHHHHH
Confidence 9998887754333
No 11
>PF06109 HlyE: Haemolysin E (HlyE); InterPro: IPR010356 This family consists of several enterobacterial haemolysin (HlyE) proteins. Haemolysin E (HlyE) is a novel pore-forming toxin of Escherichia coli, Salmonella typhi, and Shigella flexneri. HlyE is unrelated to the well characterised pore-forming E. coli haemolysins of the RTX family, haemolysin A (HlyA), and the enterohaemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, it is evident that expression of HlyE in the absence of the RTX toxins is sufficient to give a haemolytic phenotype in E. coli. HlyE is a protein of 34 kDa that is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR, such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonisation of the host [].; PDB: 2WCD_P 1QOY_A.
Probab=20.35 E-value=3.2e+02 Score=28.20 Aligned_cols=101 Identities=23% Similarity=0.178 Sum_probs=62.0
Q ss_pred CchhhHHhHHHHHHHHHhcCCccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------cccCCCCc
Q 007748 124 GPFAFINGTAQILRDCMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEE-------LVEDPEKL 196 (591)
Q Consensus 124 gp~af~~~~~~~~~~~~~~~s~~~~~~~sas~~i~~r~~~l~~~~~~la~~l~~v~~~~d~~~~~-------l~~~~~~s 196 (591)
=|+.=++.|.+.+.|...+- .|+||--+-+--+.|-.-|..---..--||.=.+.--.. +.+--++.
T Consensus 32 ipw~tf~~tikelsrfk~ey------sq~as~lvg~ik~llm~sqd~yfeatq~vyewcgv~tqll~ay~~lf~ey~ekk 105 (299)
T PF06109_consen 32 IPWQTFNDTIKELSRFKQEY------SQSASTLVGDIKSLLMNSQDRYFEATQTVYEWCGVTTQLLTAYISLFNEYNEKK 105 (299)
T ss_dssp S-HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--TTT
T ss_pred CCchhHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHhcchHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhh
Confidence 48888999999998887554 478888877766777666655444444444332221111 11334444
Q ss_pred hhH----HHHHHHHHhhhhHHhhcccccccccccCCCC
Q 007748 197 LPF----LLVTINDLFSKLEASIGHLHATRQGDSSIDG 230 (591)
Q Consensus 197 l~~----~~~~~~~~~~~Le~~~~~~~~~~~~~~~~dg 230 (591)
-++ +..++++=+.|||..-.++|++.|+--+..|
T Consensus 106 asaqk~ilikvlddgi~kl~~aq~sl~~ssqsfn~asg 143 (299)
T PF06109_consen 106 ASAQKDILIKVLDDGIIKLNKAQQSLHVSSQSFNNASG 143 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccceehhhhcchhhHHHHHHHHHhhhhhhhccccc
Confidence 444 7788888899999877777777554333333
Done!