Query 007748
Match_columns 591
No_of_seqs 132 out of 154
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zcc_A HAMP, osmolarity sensor 50.1 58 0.002 25.7 7.5 73 334-419 2-79 (114)
2 3zrx_A AF1503 protein, osmolar 30.8 1.8E+02 0.0062 22.6 7.6 73 334-419 2-79 (115)
3 3sxu_A DNA polymerase III subu 27.8 47 0.0016 30.5 3.9 43 110-152 1-48 (150)
4 3lnr_A Aerotaxis transducer AE 22.8 4.4E+02 0.015 24.2 9.6 123 137-271 24-162 (175)
5 3ghg_A Fibrinogen alpha chain; 21.8 1.7E+02 0.0058 32.5 7.2 20 423-442 139-158 (562)
6 3m91_B Prokaryotic ubiquitin-l 19.0 97 0.0033 23.4 3.3 28 429-456 7-34 (44)
7 1deq_A Fibrinogen (alpha chain 17.7 3.7E+02 0.013 28.7 8.5 19 368-386 83-101 (390)
8 4gwp_A Mediator of RNA polymer 15.0 5E+02 0.017 23.2 7.5 59 155-214 4-62 (115)
9 2odv_A Plectin 1, HD1; plakin 14.4 8.3E+02 0.028 23.7 11.4 122 318-450 21-152 (235)
10 3r84_A Mediator of RNA polymer 13.3 6E+02 0.021 21.5 7.4 57 156-213 2-58 (86)
No 1
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=50.08 E-value=58 Score=25.71 Aligned_cols=73 Identities=10% Similarity=0.277 Sum_probs=40.5
Q ss_pred HhhhhhHHhhHhhHHHHHHHhhccCCC----ccc-hHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHH
Q 007748 334 FFNDHVEQPLLSIRDELFETFRKRHKG----VME-VEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYE 408 (591)
Q Consensus 334 F~~nwV~ePl~~IrdeL~~T~R~~~~~----ims-k~sL~sd~~SLeRMV~dF~~D~~~~~~~~~~se~~~Lt~Vm~~YE 408 (591)
++..++..|+..+.+.+ ..+..++.. .-. .+++..=.+++.+|......-. +....++..--
T Consensus 2 ~~~~~i~~pl~~l~~~~-~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~------------~~~~~~~~~~s 68 (114)
T 3zcc_A 2 SHMSTITRPIIELSNTA-DKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKQLA------------DDGTLLMAGVS 68 (114)
T ss_dssp ---CTTHHHHHHHHHHH-HHHHTTCTTCCCTTTTCSSHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhh
Confidence 34567889999876544 455554422 222 3444444555566555544221 11334667778
Q ss_pred HhhcchhhHhh
Q 007748 409 KELMHPIQNLV 419 (591)
Q Consensus 409 ~eLk~Pikn~v 419 (591)
+|+|+|+..+.
T Consensus 69 hel~tpl~~i~ 79 (114)
T 3zcc_A 69 HDLRTPLTRIR 79 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHcChHHHHH
Confidence 89999987664
No 2
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=30.81 E-value=1.8e+02 Score=22.57 Aligned_cols=73 Identities=11% Similarity=0.322 Sum_probs=39.7
Q ss_pred HhhhhhHHhhHhhHHHHHHHhhccCCC----cc-chHHHhhchhHHHHHHHHHHhhccCCCCCCCcChhhHHHHHHHHHH
Q 007748 334 FFNDHVEQPLLSIRDELFETFRKRHKG----VM-EVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYE 408 (591)
Q Consensus 334 F~~nwV~ePl~~IrdeL~~T~R~~~~~----im-sk~sL~sd~~SLeRMV~dF~~D~~~~~~~~~~se~~~Lt~Vm~~YE 408 (591)
|+..++..|+..+.+. ...+..++.. +- .++++..=..++.+|+..+-.-. +........--
T Consensus 2 ~~~~~i~~pl~~l~~~-~~~i~~gdl~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~------------~~~~~~~~~~s 68 (115)
T 3zrx_A 2 SHMSTITRPIIELSNT-FDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKQLA------------DDRTLLMAGVS 68 (115)
T ss_dssp ---CTTHHHHHHHHHH-HHHHHTTCTTCCCTTTTCCSHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH-HHHHcCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 5567889999987654 3555554422 22 34455555556666655543221 01223455667
Q ss_pred HhhcchhhHhh
Q 007748 409 KELMHPIQNLV 419 (591)
Q Consensus 409 ~eLk~Pikn~v 419 (591)
+++++|+..+.
T Consensus 69 hel~~~l~~i~ 79 (115)
T 3zrx_A 69 HDLRTPLTRIR 79 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhHHHHH
Confidence 88888877653
No 3
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=27.76 E-value=47 Score=30.48 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCcccceeEEeeecCch-----hhHHhHHHHHHHHHhcCCcccccccc
Q 007748 110 GSNAQKAYFMMFERGPF-----AFINGTAQILRDCMAEGGSVQHLCQS 152 (591)
Q Consensus 110 ~~~~~~~~fm~~ergp~-----af~~~~~~~~~~~~~~~s~~~~~~~s 152 (591)
|+++.++.|.++++.|- +...-+|+++++....|..+--.|.+
T Consensus 1 ~~~M~~v~FY~L~~~~~~~~l~~~~~~aCrL~~ka~~~G~rv~V~~~d 48 (150)
T 3sxu_A 1 GSHMKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACED 48 (150)
T ss_dssp ----CEEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCCCEEEEEEeCCCchhhhhhHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 68889999999999873 47777999999999999877444544
No 4
>3lnr_A Aerotaxis transducer AER2; HAMP domain, poly-HAMP domains, signaling protein; 2.64A {Pseudomonas aeruginosa}
Probab=22.81 E-value=4.4e+02 Score=24.18 Aligned_cols=123 Identities=12% Similarity=0.121 Sum_probs=71.2
Q ss_pred HHHHhcCCccccccccccchhhhhHHHHHHHHHHHHHHHHHH------HHHHhhhhhhcc-----cC-----CCCchhHH
Q 007748 137 RDCMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQV------YMEVEKYGEELV-----ED-----PEKLLPFL 200 (591)
Q Consensus 137 ~~~~~~~s~~~~~~~sas~~i~~r~~~l~~~~~~la~~l~~v------~~~~d~~~~~l~-----~~-----~~~sl~~~ 200 (591)
...+++|--++.+-....+-|..=...+..|+..|..++++| -.++..+.+... .. -.+....+
T Consensus 24 a~~IA~GDL~~~i~~~~~DEig~L~~al~~M~~~L~~~v~~i~~v~~l~~e~~~~a~~~~~Gdl~~R~d~~~~~G~~~~l 103 (175)
T 3lnr_A 24 LQSFADGQLDTAVGEAPAPGYERLYDSLRALQRQLREQRAELQQVESLEAGLAEMSRQHEAGWIDQTIPAERLEGRAARI 103 (175)
T ss_dssp HHHHHTTCCSSCCCCCSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCCCGGGCCTHHHHH
T ss_pred HHHHHCCCCCCCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCccccChHHHHH
Confidence 456778888777766667778777889999999999998877 334444333222 11 12345567
Q ss_pred HHHHHHHhhhhHHhhcccccccccccCCCCCCCcccccccCcccccCCCCcchhhHHHHHHHHHHHHHhHH
Q 007748 201 LVTINDLFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLD 271 (591)
Q Consensus 201 ~~~~~~~~~~Le~~~~~~~~~~~~~~~~dg~~~~~l~f~~lP~~~~~~~~~t~~~l~~~i~ll~~~l~kl~ 271 (591)
...+|.+...+...++...+.-..-. .|.++.+. ++ .+| .-..+++.+|-+.++|..+-
T Consensus 104 ~~~vN~~~~~~~~~~~~~~~v~~~~a--~GDl~~~i--~~-----~~G---~~~~lk~~lN~~~~~L~~~i 162 (175)
T 3lnr_A 104 AKGVNELVAAHIAVKMKVVSVVTAYG--QGNFEPLM--DR-----LPG---KKAQITEAIDGVRERLRGAA 162 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TSCCCCCC--CC-----CCG---GGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHh--CCCCCchh--hh-----CCc---hHHHHHHHHHHHHHHHHHHH
Confidence 77777777666655443322211111 12222222 11 122 23468888888888887653
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.77 E-value=1.7e+02 Score=32.52 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q 007748 423 LARALLIQVQKLKLDIETAM 442 (591)
Q Consensus 423 LvRaLLIQVQK~KVD~e~Am 442 (591)
.|+-+++.|||+-||++..|
T Consensus 139 nLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999988765
No 6
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=19.02 E-value=97 Score=23.45 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=22.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhhhH
Q 007748 429 IQVQKLKLDIETAMLELDQILRANEINF 456 (591)
Q Consensus 429 IQVQK~KVD~e~Am~gIDkLLKSqELnF 456 (591)
.|.|+..-|++.-+..||.+|..|---|
T Consensus 7 ~~~~~~~~~~D~lLDeId~vLE~NAeeF 34 (44)
T 3m91_B 7 ERREKLTEETDDLLDEIDDVLEENAEDF 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhHHHH
Confidence 4778888899999999999999997665
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=17.69 E-value=3.7e+02 Score=28.68 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=13.4
Q ss_pred hhchhHHHHHHHHHHhhcc
Q 007748 368 QMTSNSLHRMLLAFSEQTK 386 (591)
Q Consensus 368 ~sd~~SLeRMV~dF~~D~~ 386 (591)
..+..++-+++.++.++..
T Consensus 83 ~~~~~~y~~~~~~~lk~~~ 101 (390)
T 1deq_A 83 SKDSNTLTKNIVELMRGDF 101 (390)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3566777788888887753
No 8
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=14.99 E-value=5e+02 Score=23.22 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=39.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCchhHHHHHHHHHhhhhHHh
Q 007748 155 VHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEAS 214 (591)
Q Consensus 155 ~~i~~r~~~l~~~~~~la~~l~~v~~~~d~~~~~l~~~~~~sl~~~~~~~~~~~~~Le~~ 214 (591)
.+|.||+..|..+-..|+++|.+.-.=++.+.+.- +..+..=++.-..+..+.+.|+.+
T Consensus 4 ~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK-~g~~~~K~qF~~~~~~fY~~Ls~~ 62 (115)
T 4gwp_A 4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELK-RGNESVKPQFENHVKQFYERLDKS 62 (115)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCccchHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988777777776532 222222233444455555666544
No 9
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=14.35 E-value=8.3e+02 Score=23.69 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHH--HHhhhhhHHhhHhhHHHHHHHhhccCCC--ccchHHHhhchhHHHHHHHHHHhhccCCCCCCC
Q 007748 318 SDLENWICEAKDSMV--GFFNDHVEQPLLSIRDELFETFRKRHKG--VMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPEN 393 (591)
Q Consensus 318 ~~I~~wi~~a~etv~--~F~~nwV~ePl~~IrdeL~~T~R~~~~~--imsk~sL~sd~~SLeRMV~dF~~D~~~~~~~~~ 393 (591)
+++..||+.....+. .|=.+. .-++....+ |.+||.+++. +..|..|+.-..+|+-.+.. ....+|+.
T Consensus 21 s~Ll~WI~~~~~~l~~r~f~~sl--~~vq~~l~~-f~~fr~~ekppk~~EK~~Le~ll~~lqtklr~-----~~~~ppeg 92 (235)
T 2odv_A 21 LLLLQWMRHHTAAFEERRFPSSF--EEIEILWSQ-FLKFKEMELPAKEADKNRSKGIYQSLEGAVQA-----GQLKVPPG 92 (235)
T ss_dssp HHHHHHHHHHHHHHHCC-CCSSH--HHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT-----TSSCCCTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCCH--HHHHHHHHH-HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCC
Confidence 578888887444332 333222 123333333 6777775543 67788888888888887773 11233444
Q ss_pred cChh------hHHHHHHHHHHHhhcchhhHhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 007748 394 ASDQ------EMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILR 450 (591)
Q Consensus 394 ~se~------~~Lt~Vm~~YE~eLk~Pikn~v~GdLvRaLLIQVQK~KVD~e~Am~gIDkLLK 450 (591)
.... +.|...+..+|+.|+.=|+-+ +-.-.|---+|+-=.+.+.-+++++.+|+
T Consensus 93 ~~~~di~~~W~~Le~ae~eRe~aL~~el~Rl---erLe~La~kf~rka~~~e~~L~~~~~~L~ 152 (235)
T 2odv_A 93 YHPLDVEKEWGKLHVAILEREKQLRSEFERL---EALQRIVTKLQMEAGLAEEQLNQADALLQ 152 (235)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 236677777887666554321 00001112345555678888999999993
No 10
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=13.33 E-value=6e+02 Score=21.52 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCchhHHHHHHHHHhhhhHH
Q 007748 156 HISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEA 213 (591)
Q Consensus 156 ~i~~r~~~l~~~~~~la~~l~~v~~~~d~~~~~l~~~~~~sl~~~~~~~~~~~~~Le~ 213 (591)
+|.||+..|+++-..+|+.|-..=.=++.+.+.- ..++..=+..-..+..+++.|+.
T Consensus 2 ~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k-~~~~~~K~~F~~~t~~fy~tL~~ 58 (86)
T 3r84_A 2 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELK-RGNESVKPQFENHVKQFYERLDK 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCcHhHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999998876655555555432 23334444555566666666654
Done!