Query 007748
Match_columns 591
No_of_seqs 132 out of 154
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 09:31:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007748.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007748hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m1eb_ a.161.1.1 (B:) beta-ca 23.3 15 0.0011 28.3 1.6 52 156-222 7-58 (70)
2 d1ldja2 a.118.17.1 (A:17-410) 17.7 2E+02 0.014 26.9 9.0 95 287-385 103-199 (394)
3 d1au1a_ a.26.1.3 (A:) Interfer 10.0 4E+02 0.029 22.7 7.9 63 248-310 76-147 (166)
4 d1rh2a_ a.26.1.3 (A:) Interfer 9.5 3.4E+02 0.024 22.9 7.1 32 248-279 68-99 (154)
5 d2ftxb1 d.300.1.2 (B:155-213) 7.8 67 0.0049 23.9 1.3 14 16-29 44-58 (59)
6 d2p06a1 a.204.1.3 (A:1-84) Hyp 7.5 74 0.0054 24.2 1.5 31 528-563 43-73 (84)
7 d1t98a2 a.47.6.1 (A:119-281) C 7.0 89 0.0065 27.2 1.9 44 332-376 31-76 (163)
8 d2nn6b2 d.101.1.1 (B:151-240) 5.8 1.3E+02 0.0092 22.5 2.1 43 241-284 45-87 (90)
9 d1ufza_ a.5.9.1 (A:) HBS1-like 5.8 1.2E+02 0.0089 23.8 1.9 31 415-445 41-72 (83)
10 d1joya_ a.30.2.1 (A:) EnvZ his 5.2 4.1E+02 0.03 18.5 4.7 18 402-419 14-31 (67)
No 1
>d1m1eb_ a.161.1.1 (B:) beta-catenin-interacting protein ICAT {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.34 E-value=15 Score=28.33 Aligned_cols=52 Identities=27% Similarity=0.319 Sum_probs=35.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCchhHHHHHHHHHhhhhHHhhccccccc
Q 007748 156 HISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGHLHATR 222 (591)
Q Consensus 156 ~i~~r~~~l~~~~~~la~~l~~v~~~~d~~~~~l~~~~~~sl~~~~~~~~~~~~~Le~~~~~~~~~~ 222 (591)
|+..||.+|+.|| |+||.|+.+-+.=|.+.--+++.-++.+|......+.++
T Consensus 7 YtQQkveIL~aLr---------------KLGekLtp~ee~FL~~na~a~~~~lsqfekvs~d~Gs~d 58 (70)
T d1m1eb_ 7 YIQQKVRVLLMLR---------------KMGSNLTASEEEFLRTYAGVVNSQLSQLPPHSIDQGAED 58 (70)
T ss_dssp HHHHHHHHHHHHH---------------HTTCCCCHHHHHHHHHTHHHHHHHHTC-----CCCCSCC
T ss_pred HHHHHHHHHHHHH---------------HhcccCChhHHHHHHHhhHHHHHHHHhhhhhccccCCcc
Confidence 4777888888775 799999866666677777778888999998766666654
No 2
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.74 E-value=2e+02 Score=26.94 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=51.4
Q ss_pred chhhhhHHHhhhhhhhhhHHHHhhccCCcChhhHHHHHHHHHHHHHHHhhhhhHHhhH-hhHHHHHHHhhccCCC-ccch
Q 007748 287 ITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLL-SIRDELFETFRKRHKG-VMEV 364 (591)
Q Consensus 287 l~RyW~~~~~~~l~~~~~s~wl~r~s~l~gs~~I~~wi~~a~etv~~F~~nwV~ePl~-~IrdeL~~T~R~~~~~-imsk 364 (591)
+.+.|-.+..++-.+.-+..|+=|+-....+.+=...+.+..+.....|++.|..|+. .|.+.+++.|...+.| ..+.
T Consensus 103 ~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~~~~~~l~~~il~~I~~~R~g~~i~~ 182 (394)
T d1ldja2 103 YTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINT 182 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 4588998877655543333333333111111111122334556677889999999984 4666677777664443 4443
Q ss_pred HHHhhchhHHHHHHHHHHhhc
Q 007748 365 EEVQMTSNSLHRMLLAFSEQT 385 (591)
Q Consensus 365 ~sL~sd~~SLeRMV~dF~~D~ 385 (591)
+- ..++-+|.++.+.+.
T Consensus 183 ~l----i~~~i~~l~~l~~~~ 199 (394)
T d1ldja2 183 RL----ISGVVQSYVELGLNE 199 (394)
T ss_dssp HH----HHHHHHHHHHTSCCS
T ss_pred HH----HHHHHHHHHHhCcch
Confidence 22 456667777776553
No 3
>d1au1a_ a.26.1.3 (A:) Interferon-beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.97 E-value=4e+02 Score=22.66 Aligned_cols=63 Identities=17% Similarity=0.398 Sum_probs=41.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCc-------chhhhhHHHhhhhh--hhhhHHHHhh
Q 007748 248 GSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRK-------ITRYWVHYTCGAVG--LSFCSIWLLR 310 (591)
Q Consensus 248 ~~~~t~~~l~~~i~ll~~~l~kl~~~~~~~l~~~~~Ps~-------l~RyW~~~~~~~l~--~~~~s~wl~r 310 (591)
...|.+..+.++.+.|+..+..++.++.........|.. +.+|--.+...+-. .+.|++=++|
T Consensus 76 sa~Wnet~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~~~~~~l~lk~YF~rI~~yLk~K~YS~CAWEiVR 147 (166)
T d1au1a_ 76 STGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVR 147 (166)
T ss_dssp GGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCTTTHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcCcccchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345999999999999999999999998877755443322 45555554433222 3444444443
No 4
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.51 E-value=3.4e+02 Score=22.85 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=27.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 007748 248 GSQWTDCEIKDSINLIYQNLQKLDVYLSHMVA 279 (591)
Q Consensus 248 ~~~~t~~~l~~~i~ll~~~l~kl~~~~~~~l~ 279 (591)
...|.+..+.++++.|+..+..++.++.....
T Consensus 68 sa~Wnet~le~fl~~L~~Ql~~Le~Cl~~~~~ 99 (154)
T d1rh2a_ 68 SAAWDETLLDKFYTELYQQLNDLEACVIQGVG 99 (154)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44699999999999999999999988765543
No 5
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.80 E-value=67 Score=23.86 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=11.6
Q ss_pred hHH-HHhHHHHhhhh
Q 007748 16 LIS-SYSNYVWKRVA 29 (591)
Q Consensus 16 ~~~-~~~~~~~~~~~ 29 (591)
+++ ||++|+|.||+
T Consensus 44 ~S~fF~tnYiWd~L~ 58 (59)
T d2ftxb1 44 LSDFYKTKYIWERLG 58 (59)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhc
Confidence 445 99999999986
No 6
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.53 E-value=74 Score=24.15 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=23.7
Q ss_pred hhHHhHHHHHHHhhccCCchhhHhhHHHHHHHhcCC
Q 007748 528 LVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKP 563 (591)
Q Consensus 528 LLL~el~~L~~~v~~~~~~~~Ew~~f~eDL~DL~~~ 563 (591)
-|.-|++.||.++++ .+|..++..+.|.+|-
T Consensus 43 rlfeemdelreavek-----edwenlrdelldvanf 73 (84)
T d2p06a1 43 RLFEEMDELREAVEK-----EDWENLRDELLDVANF 73 (84)
T ss_dssp HHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 355688899988775 6899988888887753
No 7
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF (KicB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.95 E-value=89 Score=27.16 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHhhhhhHHhhHhhHHHHHHHhhccCCCccc--hHHHhhchhHHHH
Q 007748 332 VGFFNDHVEQPLLSIRDELFETFRKRHKGVME--VEEVQMTSNSLHR 376 (591)
Q Consensus 332 ~~F~~nwV~ePl~~IrdeL~~T~R~~~~~ims--k~sL~sd~~SLeR 376 (591)
...|+..|.-|++==..|+|+.|.- .+.+|+ .++++.+.+.|=.
T Consensus 31 e~~Wr~~V~apLkySVaeifd~Idl-~QR~mDeQQ~~Vk~eIA~LL~ 76 (163)
T d1t98a2 31 EFHWHRNVYAPLKYSVAEIFDSIDL-TQRLMDEQQQQVKDDIAQLLN 76 (163)
T ss_dssp HHHHHHHTHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhheeHHHHHhhhhH-HHHhHHHHHHHHHHHHHHHHH
Confidence 4789999999998766778887654 345676 5777777777744
No 8
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.83 E-value=1.3e+02 Score=22.49 Aligned_cols=43 Identities=9% Similarity=0.241 Sum_probs=35.2
Q ss_pred CcccccCCCCcchhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCC
Q 007748 241 LPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKP 284 (591)
Q Consensus 241 lP~~~~~~~~~t~~~l~~~i~ll~~~l~kl~~~~~~~l~~~~~P 284 (591)
.-.+.+++ .|+..++.+++.+..+...++...+++.++++.++
T Consensus 45 I~~~~~~g-~~~~~~~~~~l~~a~~~~~~i~~~~~~~l~~~~~e 87 (90)
T d2nn6b2 45 IALLEMDA-RLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 87 (90)
T ss_dssp EEEEEECS-CCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEec-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34445555 69999999999999999999999999888877554
No 9
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.80 E-value=1.2e+02 Score=23.76 Aligned_cols=31 Identities=16% Similarity=0.420 Sum_probs=25.0
Q ss_pred hhHhhhhhHHHHHHHH-HHHHhhhHHHHHHHH
Q 007748 415 IQNLVNGELARALLIQ-VQKLKLDIETAMLEL 445 (591)
Q Consensus 415 ikn~v~GdLvRaLLIQ-VQK~KVD~e~Am~gI 445 (591)
+|++|.-++.+.-|+| |=|.|-|++.|++.|
T Consensus 41 mR~VvGDsvpe~~lv~avlk~dydvekALd~v 72 (83)
T d1ufza_ 41 MREVLGDAVPDDILTEAILKHKFDVQKALSVV 72 (83)
T ss_dssp HHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHcccCCHHHHHHHHHHccCCHHHHHHHH
Confidence 6777777788888886 568999999998654
No 10
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]}
Probab=5.19 E-value=4.1e+02 Score=18.50 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=12.7
Q ss_pred HHHHHHHHhhcchhhHhh
Q 007748 402 IVMSRYEKELMHPIQNLV 419 (591)
Q Consensus 402 ~Vm~~YE~eLk~Pikn~v 419 (591)
.+...--+|||+|+..+-
T Consensus 14 ~f~~~vsHeLRTPLt~i~ 31 (67)
T d1joya_ 14 LLMAGVSHDLRTPLTRIR 31 (67)
T ss_dssp HHHTTTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 355556789999987653
Done!