BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007749
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
Synthetase From Cytophaga Hutchinsonii
Length = 634
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 163/596 (27%), Positives = 253/596 (42%), Gaps = 78/596 (13%)
Query: 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
+ +++ +N +D++ N+KNI ++I AK A I PEL ITGYGCED FL
Sbjct: 3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDW 62
Query: 61 TVTHAWE-CLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAND 119
A E C + + TD I S G+P YNC L N + K +LAN+
Sbjct: 63 VAETAIEYCFE--IAASCTD-ITVSLGLPXRIAGITYNCVCLVENGIVKGFSAKQFLANE 119
Query: 120 GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFT 179
G + E RWFTAW ++ F L N++ PFG D + EICE+ +
Sbjct: 120 GVHYETRWFTAWP-RNHTTTF-LYNDVKY-------PFGDVLYNVKDARIGFEICEDAWR 170
Query: 180 PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRL 239
G + +N S SH K R I + Y+Y+N G + GR
Sbjct: 171 TDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRX 230
Query: 240 YFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPS 299
+DG + G +I + + S K+V ++ A + D S
Sbjct: 231 IYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATD-----------------------S 267
Query: 300 VAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAF--GPGCWLWDYLRRSGASGFLLPLSG 357
P + +L E+E F L+DY R+S + GF+L LSG
Sbjct: 268 AETPETVLTQDDL---------------EKEFEFWEATSLGLFDYXRKSRSKGFVLSLSG 312
Query: 358 GADSSSVAAIVGCMCQLVVKEI------SNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411
GADSS+ A V + +KE+ + + D + H F +++
Sbjct: 313 GADSSACAIXVAEXIRKGLKELGLTAFLQKSNXETLFDLPALQHLP---FEEQAKKITAV 369
Query: 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVD 471
T + + NS ET AK LA+ IG+ + S+D + + + + + + ++ D
Sbjct: 370 FLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWEKD 429
Query: 472 GGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDC 531
++ LQNIQAR R + + L ++ L++ +SN EG GY T
Sbjct: 430 ------DITLQNIQARGRAPIIWXLTNVKQ--------ALLITTSNRSEGDVGYATXDGD 475
Query: 532 SSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQVHK 587
++ I PI + K +R++LRWA + L + PTAEL P S Y+Q +
Sbjct: 476 TAGGIAPIAGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAPTAELRP--SEYTQTDE 529
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 121/292 (41%), Gaps = 16/292 (5%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++VA C + D N ++ + + GA + + PEL ++GY ED L+ +
Sbjct: 12 FVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLL 71
Query: 63 THAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNY 122
+ L DL+ + G P+ YN V+ ++ + PK +L +
Sbjct: 72 DAVEDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREF 131
Query: 123 RELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI----QFLDTAVAAEICEELF 178
E R + ++ + V FG + + EICE++F
Sbjct: 132 YERRQMAPGDGERG----------TIRIGGADVAFGTDLLFAASDLPGFVLHVEICEDMF 181
Query: 179 TPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDGG 237
P+PP A+ AL G V N SGS + + + R SA+ Y+Y+ +G
Sbjct: 182 VPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTT 241
Query: 238 RLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289
L +DG + + NG ++A+ +F K V VA VD + + R + +F +
Sbjct: 242 DLAWDGQTMIWENGALLAESERFP-KGVRRSVADVDTELLRSERLRMGTFDD 292
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 120/292 (41%), Gaps = 16/292 (5%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++VA C + D N ++ + + GA + + PEL ++GY ED L+ +
Sbjct: 12 FVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLL 71
Query: 63 THAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNY 122
+ L DL+ + G P+ YN V+ ++ + PK +L +
Sbjct: 72 DAVEDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREF 131
Query: 123 RELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI----QFLDTAVAAEICEELF 178
E R + ++ + V FG + + EI E++F
Sbjct: 132 YERRQMAPGDGERG----------TIRIGGADVAFGTDLLFAASDLPGFVLHVEIAEDMF 181
Query: 179 TPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDGG 237
P+PP A+ AL G V N SGS + + + R SA+ Y+Y+ +G
Sbjct: 182 VPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTT 241
Query: 238 RLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289
L +DG + + NG ++A+ +F K V VA VD + + R + +F +
Sbjct: 242 DLAWDGQTMIWENGALLAESERFP-KGVRRSVADVDTELLRSERLRMGTFDD 292
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 48/215 (22%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
+L Y++++GA GF+L +SGG DS+ + G + QL V+ I + A+R+ H
Sbjct: 28 FLKQYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVESIREEGGDAQFIAVRLPH-- 81
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
G++ + + LA K SW D I + VSAF
Sbjct: 82 ---------------------GTQQDEDDAQ-LALKFIKPDKSWKFD--IKSTVSAFSDQ 117
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
+Q TG + + N++AR RM+ + + + G LVLG+ +
Sbjct: 118 YQQETG----------DQLTDFNKGNVKARTRMIAQYAIG-------GQEGL-LVLGTDH 159
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLR 552
E + G+ TKY AD+ P+ ++K+ RT L+
Sbjct: 160 AAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLK 194
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 48/215 (22%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
+L DY++++GA GF+L +SGG DS+ + G + QL V+EI N
Sbjct: 29 FLKDYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVEEIRN-------------EGG 71
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
N F A R+ Y V E+ +Q LA + S D++ + V AF +
Sbjct: 72 NATF------IAVRLPYKV-QKDEDDAQ----LALQFIQADQSVAFDIA--STVDAFSNQ 118
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
++ L + ++ + N++ARIRMV + + + G LV+G+ +
Sbjct: 119 YENLLDE----------SLTDFNKGNVKARIRMVTQYAIGG-------QKGL-LVIGTDH 160
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLR 552
E + G+ TK+ AD+ P+ ++K+ R L+
Sbjct: 161 AAEAVTGFFTKFGDGGADLLPLTGLTKRQGRALLQ 195
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
Length = 590
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 141/598 (23%), Positives = 228/598 (38%), Gaps = 126/598 (21%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT 63
L++A +++ D N + I + E GA + PE+ +TGY ED L V
Sbjct: 5 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVE 64
Query: 64 HAWECLKDL--------------LLG--DWTDGILCSFGMPVIKGSERYNCQVLCLNRKI 107
+ L++L L+G D ++ +G P G+ R VL R +
Sbjct: 65 ASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPA--GAPRNAAAVLHRGR-V 121
Query: 108 IMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDT 167
+ K L N G + E R+F +P + ++P ++
Sbjct: 122 ALTFAKHHLPNYGVFDEFRYF-------------VPGD--------TMPI----VRLHGV 156
Query: 168 AVAAEICEELFTP--IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225
+A ICE+L+ P A A G+ + +NAS ++ K D R+ G
Sbjct: 157 DIALAICEDLWQDGGRVPAARSAGAGLLLSVNAS--PYERDKDDTRLELVRKRAQEAGCT 214
Query: 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284
Y G L FDG S VV +G+++A+ QFS V + DLD A
Sbjct: 215 TAYLAMIGGQD-ELVFDGDSIVVDRDGEVVARAPQFSEGCVVL-----DLDLPAAEAEPP 268
Query: 285 SSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLR 344
+ + +I + + + +++ +++ +EE+ L Y+
Sbjct: 269 TGVVDDG---LRIDRLVISEEPLPAYEAELAGGYADRLD---ADEEVYSALVVGLRAYVA 322
Query: 345 RSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404
++G L+ LSGG DS+ VAAI C + G + V
Sbjct: 323 KNGFRSVLIGLSGGIDSALVAAIA---CDAL------GAQNV------------------ 355
Query: 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 464
Y V M S+ SS ++ A +LA G VSI+ + A+++ LTG
Sbjct: 356 ---------YGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASL-GLTG- 404
Query: 465 RPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRG 524
L +N+Q+R+R + L + N+ G ++VL N E G
Sbjct: 405 --------------LAEENLQSRLR-------GTTLMAISNQEG-HIVLAPGNKSELAVG 442
Query: 525 YLTKYDCSSADINPIGSISKQDLRTFLRW---AATHLGYS-SLAEIE-AAPPTAELEP 577
Y T Y S PI + K + W AA G + + E PP+AEL P
Sbjct: 443 YSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRP 500
>pdb|3DPI|A Chain A, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
pdb|3DPI|B Chain B, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
Length = 285
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 101/249 (40%), Gaps = 50/249 (20%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
++ DYLR +G +L +SGG DSS+ G + QL V+ + R Y
Sbjct: 36 FVADYLRTAGLRACVLGISGGIDSSTA----GRLAQLAVERL------------RASGY- 78
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
D+R A R+ Y + + R LA ADE +++D V
Sbjct: 79 ------DARFVAMRLPYGA---QHDEADARRALAFVRADET------LTVD--VKPAADA 121
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
+D ++ L NI+AR RM+ + +A V V+G+ +
Sbjct: 122 MLAALAAGGLAYLDHAQ--QDFVLGNIKARERMIAQYAVAGARNGV--------VIGTDH 171
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577
E + G+ TK+ AD+ P+ ++K+ +R R LG ++ PTA+LE
Sbjct: 172 AAESVMGFFTKFGDGGADVLPLAGLTKRRVRALARM----LGADEPLVLKT--PTADLET 225
Query: 578 IRSNYSQVH 586
+R H
Sbjct: 226 LRPQRPDEH 234
>pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|B Chain B, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|C Chain C, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|D Chain D, Structure Of Nmn Synthetase From Francisella Tularensis
Length = 249
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 54/207 (26%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
WL D A GF++ LSGG DS+ A++ A++ G
Sbjct: 19 WLSDSCMNYPAEGFVIGLSGGIDSAVAASL----------------------AVKTG--- 53
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
PT + + + S+N+ + A +L + + H +SI AFL+
Sbjct: 54 ---LPTTA----------LILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLAS 100
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
Q+ T + +N + + N QAR+RM+ + A +N+ +V+G+ N
Sbjct: 101 TQSFTNLQ--------NNRQLVIKGNAQARLRMMYLYAYAQ----QYNR----IVIGTDN 144
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISK 544
E GY TK+ +ADI P+ ++ K
Sbjct: 145 ACEWYMGYFTKFGDGAADILPLVNLKK 171
>pdb|2E18|A Chain A, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
pdb|2E18|B Chain B, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
Length = 257
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 89/209 (42%), Gaps = 60/209 (28%)
Query: 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYAN 398
+ +++R G +G ++ +SGG DS++VA + G E+V
Sbjct: 13 ILEFIREKGNNGVVIGISGGVDSATVAYLATKAL---------GKEKVLG---------- 53
Query: 399 GEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLF 458
+ F EN E AK +A+++G + ++I +V +F+
Sbjct: 54 -------------LIMPYF---ENKDVED---AKLVAEKLGIGYKVINIKPIVDSFVENL 94
Query: 459 QTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNV 518
+ N++ GL NI +R RM++ + A+ L + VLG+SN
Sbjct: 95 EL--------------NLDRKGLGNIMSRTRMIMLYAHANSLGRI--------VLGTSNR 132
Query: 519 DEGLRGYLTKYDCSSADINPIGSISKQDL 547
E L GY TK+ ++D PI ++ K ++
Sbjct: 133 SEFLTGYFTKWGDGASDYAPIINLYKTEV 161
>pdb|3P52|A Chain A, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
pdb|3P52|B Chain B, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
Length = 249
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 65/233 (27%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
++ + ++ S + G +L LSGG DS A+V +C+ +KE
Sbjct: 16 FIQEKVKNSQSQGVVLGLSGGIDS----ALVATLCKRALKEN------------------ 53
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
+ + ++ S++ A +L ++ + + I +++ AF
Sbjct: 54 ---------------VFALLXPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAF--- 95
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
+ N + L N ARIR L + ++L LV+G+SN
Sbjct: 96 ------------IKQSENTTLVSLGNFAARIRXSLLYDYSAL--------KNSLVIGTSN 135
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAP 570
E L GY T Y + NPIGS+ K ++ ++ H + I+ AP
Sbjct: 136 KSELLLGYGTIYGDLACAFNPIGSLYKSEIYALAKYLNLHENF-----IKKAP 183
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 94/241 (39%), Gaps = 58/241 (24%)
Query: 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYAN 398
+ DY+ ++G G ++ LSGG DS+ V L V + G E+V+A + Y
Sbjct: 291 VRDYIGKNGFPGAIIGLSGGVDSALV---------LAVAVDALGAERVRA-VMMPSRYTA 340
Query: 399 GEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLF 458
G TD+ + A+R +G + +++I + AF
Sbjct: 341 GISTTDAADMARR--------------------------VGVRYDEIAIAPMFDAF---- 370
Query: 459 QTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNV 518
R + E+ +NIQARIR +LL + NK G +VL + N
Sbjct: 371 ------RASLAAEFAGLAEDATEENIQARIR-------GTLLMALSNKFG-SIVLTTGNK 416
Query: 519 DEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRW--AATHLGYSSLA--EIEAAPPTAE 574
E GY T Y + I I+K + R+ AA G + I P+AE
Sbjct: 417 SEMAVGYCTLYGDMAGGFAVIKDIAKTLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAE 476
Query: 575 L 575
L
Sbjct: 477 L 477
>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNG|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNH|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Helicobacter Pylori
Length = 268
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 92/242 (38%), Gaps = 70/242 (28%)
Query: 338 WLWDYL----RRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRI 393
+L D+L ++ G + LSGG DS A+VG +CQ V KE +
Sbjct: 11 YLCDFLEKEVQKRGFKKVVYGLSGGLDS----AVVGVLCQKVFKENA------------- 53
Query: 394 GHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSA 453
+ + M S S E + A L ++ + + SI +
Sbjct: 54 --------------------HALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAI 93
Query: 454 FLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVL 513
F S F+ + R N AR+RM AF+ + ++ LV+
Sbjct: 94 FSSHFKDASLTRK---------------GNFCARLRM--AFL------YDYSLKSDSLVI 130
Query: 514 GSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTA 573
G+SN E + GY T + + INPIG + K ++ R +I PP+A
Sbjct: 131 GTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELARRLNIP------KKILNKPPSA 184
Query: 574 EL 575
+L
Sbjct: 185 DL 186
>pdb|1D9U|A Chain A, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasacharide
pdb|1D9U|B Chain B, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasacharide
pdb|3D3D|A Chain A, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasaccharide
pdb|3D3D|B Chain B, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasaccharide
Length = 154
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 105 RKIIMIRPKLWLANDGNYREL-RWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163
RK++ + PKL G Y+ L RW+ A++++ L+DF ++ +VAL+Q I
Sbjct: 50 RKLVTLNPKLKSTGAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMID 109
Query: 164 FLDTAVAAEICEELFTPIP 182
D A + C ++ +P
Sbjct: 110 RGDIRQAIDRCSNIWASLP 128
>pdb|1WXE|A Chain A, E.Coli Nad Synthetase, Amp
pdb|1WXF|A Chain A, E.Coli Nad Synthetase
pdb|1WXG|A Chain A, E.Coli Nad Synthetase, Dnd
pdb|1WXH|A Chain A, E.coli Nad Synthetase, Nad
pdb|1WXI|A Chain A, E.Coli Nad Synthetase, Amp.Pp
Length = 275
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 61/233 (26%)
Query: 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEI--SNGDEQVKADAIRIGHYANGEFPTDSREF 408
+L +SGG DS+ + G +CQ+ + E+ G+E ++ A+R+ + D ++
Sbjct: 43 LVLGISGGQDST----LAGKLCQMAINELRLETGNESLQFIAVRLPYGVQA----DEQDC 94
Query: 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCY 468
I + Q R+L + A L+ Q L
Sbjct: 95 QDAIAFI---------QPDRVLTV----------------NIKGAVLASEQALR------ 123
Query: 469 KVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTK 528
+ G + + N +AR RM + +A + V V+G+ + E + G+ TK
Sbjct: 124 --EAGIELSDFVRGNEKARERMKAQYSIAGMTSGV--------VVGTDHAAEAITGFFTK 173
Query: 529 YDCSSADINPIGSISKQDLRTFLRWAA--THLGYSSLAEIEAAPPTAELEPIR 579
Y DINP+ ++K+ + L A HL + PTA+LE R
Sbjct: 174 YGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKA--------PTADLEDDR 218
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 45/284 (15%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++KVA +N L+ D N ++ I A + GA + + PEL TGY E T
Sbjct: 1 MVKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFE-------TR 53
Query: 63 THAWECLKDLLLGDWTDGIL---CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAND 119
+E + + G+ T ++ G+ ++ G+ + VL +++ P+ ++
Sbjct: 54 EEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGTAEKDGDVLY--NSAVVVGPRGFI--- 108
Query: 120 GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFT 179
G YR++ F +++K E P ++ + F GF++ V I + F
Sbjct: 109 GKYRKIHLF--YREKFFFE----PGDLGFRV------FDLGFMK-----VGVMIXFDWFF 151
Query: 180 PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAF-ISATHSRGGVYMYSNHQGCDGGR 238
P LAL G +V +H + Y RA I A ++ VY + + +
Sbjct: 152 PESART-LALKGADVI-----AHPANLVMPYAPRAMPIRALENK--VYTVTADRVGEERG 203
Query: 239 LYFDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281
L F G S + ++++ S+ + E+ VA++DL V R
Sbjct: 204 LKFIGKSLIASPKAEVLSMASE---TEEEVGVAEIDLSLVRNKR 244
>pdb|3Q4G|A Chain A, Structure Of Nad Synthetase From Vibrio Cholerae
pdb|3Q4G|B Chain B, Structure Of Nad Synthetase From Vibrio Cholerae
Length = 279
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 483 NIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSI 542
N++AR R V + +A + LVLG+ + E + G+ TK+ + D+ P+ +
Sbjct: 145 NVKARARXVAQYEIAGYVGG--------LVLGTDHSAENITGFYTKFGDGACDLAPLFGL 196
Query: 543 SKQDLRTFLRW--AATHLGYSSLAEIEAAPPTAELEPI 578
+K+ +R + A L Y + PTA+LE +
Sbjct: 197 NKRQVRLLAKTLGAPEQLVYKT--------PTADLEEL 226
>pdb|3HMQ|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Nad
Synthetase (Nade) From Salmonella Typhimurium Lt2 In
Complex With Nad(+)
Length = 275
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAA--THLGYSSLAEIEA 568
+V+G+ + E + G+ TKY DINP+ ++K+ + L HL Y +
Sbjct: 156 VVVGTDHAAEAITGFFTKYGDGGTDINPLHRLNKRQGKQLLAALGCPEHL-YKKV----- 209
Query: 569 APPTAELEPIR 579
PTA+LE R
Sbjct: 210 --PTADLEDDR 218
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 103/276 (37%), Gaps = 43/276 (15%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT 63
+KV L+ D N ++ I A + GA + + PEL TGY E D
Sbjct: 2 VKVGYIQXEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQ 61
Query: 64 HAWECLKDLLLGDWTD--GILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGN 121
E L + G+ G G+ YN V+ R I G
Sbjct: 62 QIPEGETTTFLXELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGYI-----------GK 110
Query: 122 YRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPI 181
YR++ F +++K E P ++ + F GF + V IC + F P
Sbjct: 111 YRKIHLF--YREKVFFE----PGDLGFKV------FDIGFAK-----VGVXICFDWFFPE 153
Query: 182 PPHADLALNGVEVFMNASGSHHQLRKLDYRIRAF-ISATHSRGGVYMYSNHQGCDGGRLY 240
LAL G E+ +H Y RA I A +R VY + + + L
Sbjct: 154 SART-LALKGAEII-----AHPANLVXPYAPRAXPIRALENR--VYTITADRVGEERGLK 205
Query: 241 FDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLD 275
F G S + ++++ S+ + EI V ++DL+
Sbjct: 206 FIGKSLIASPKAEVLSIASE---TEEEIGVVEIDLN 238
>pdb|1H4J|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|E Chain E, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|G Chain G, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
Length = 599
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSAD 535
+++GSS + G+RGYLT YD + +
Sbjct: 169 VIIGSSGAELGVRGYLTAYDVKTGE 193
>pdb|1W6S|A Chain A, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
pdb|1W6S|C Chain C, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
Length = 599
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSAD 535
+++GSS + G+RGYLT YD + +
Sbjct: 169 VIIGSSGAELGVRGYLTAYDVKTGE 193
>pdb|1H4I|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4I|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase
Length = 599
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSAD 535
+++GSS + G+RGYLT YD + +
Sbjct: 169 VIIGSSGAELGVRGYLTAYDVKTGE 193
>pdb|1LRW|A Chain A, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
pdb|1LRW|C Chain C, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
Length = 600
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 511 LVLGSSNVDEGLRGYLTKYDCSSADI 536
+++GSS + G+RGY+T YD S ++
Sbjct: 169 VLVGSSGAELGVRGYVTAYDVKSGEM 194
>pdb|2BBD|A Chain A, Crystal Structure Of The Stiv Mcp
pdb|2BBD|B Chain B, Crystal Structure Of The Stiv Mcp
pdb|2BBD|C Chain C, Crystal Structure Of The Stiv Mcp
pdb|2BBD|D Chain D, Crystal Structure Of The Stiv Mcp
Length = 350
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 284 ISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320
I S + +PS PYNL Q FNL S L
Sbjct: 38 IGSISNSGTAAVTLPSAPFPYNLVQTFNLSYEGSKTL 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,161,572
Number of Sequences: 62578
Number of extensions: 759027
Number of successful extensions: 1638
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1597
Number of HSP's gapped (non-prelim): 36
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)