Query 007749
Match_columns 591
No_of_seqs 418 out of 3020
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 14:49:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02339 NAD+ synthase (glutam 100.0 2E-119 4E-124 1013.8 60.0 589 1-589 1-589 (700)
2 KOG2303 Predicted NAD synthase 100.0 1E-118 3E-123 907.9 40.8 587 1-588 2-589 (706)
3 PRK02628 nadE NAD synthetase; 100.0 1E-96 2E-101 832.2 53.8 528 2-589 11-563 (679)
4 PRK13981 NAD synthetase; Provi 100.0 1.5E-88 3.3E-93 752.9 52.1 460 4-588 1-462 (540)
5 cd07570 GAT_Gln-NAD-synth Glut 100.0 3.8E-47 8.3E-52 385.0 28.8 251 5-286 1-252 (261)
6 TIGR03381 agmatine_aguB N-carb 100.0 2E-44 4.3E-49 368.6 26.4 253 4-287 1-268 (279)
7 PRK10438 C-N hydrolase family 100.0 6.2E-44 1.3E-48 360.2 26.1 246 1-289 1-249 (256)
8 cd07587 ML_beta-AS mammalian-l 100.0 3.9E-44 8.5E-49 376.7 24.8 257 2-287 62-349 (363)
9 cd07576 R-amidase_like Pseudom 100.0 4.3E-44 9.4E-49 361.1 24.0 248 5-289 1-250 (254)
10 cd07586 nitrilase_8 Uncharacte 100.0 9.5E-44 2.1E-48 361.8 26.2 252 5-289 1-259 (269)
11 cd07568 ML_beta-AS_like mammal 100.0 2.5E-43 5.5E-48 362.1 26.9 256 2-288 2-274 (287)
12 COG0171 NadE NAD synthase [Coe 100.0 1.6E-43 3.6E-48 350.8 19.6 205 328-589 5-209 (268)
13 COG0388 Predicted amidohydrola 100.0 9.9E-43 2.1E-47 355.3 25.3 254 3-287 2-259 (274)
14 PLN00202 beta-ureidopropionase 100.0 1.7E-42 3.8E-47 367.8 26.4 256 2-289 85-372 (405)
15 PF02540 NAD_synthase: NAD syn 100.0 1.4E-43 3.1E-48 351.6 15.3 188 332-588 2-189 (242)
16 cd07573 CPA N-carbamoylputresc 100.0 7.8E-42 1.7E-46 350.4 26.9 252 4-288 1-272 (284)
17 cd07572 nit Nit1, Nit 2, and r 100.0 3.9E-42 8.4E-47 349.1 24.3 249 5-288 1-262 (265)
18 cd07569 DCase N-carbamyl-D-ami 100.0 7.8E-42 1.7E-46 353.3 26.9 252 2-283 2-284 (302)
19 cd07583 nitrilase_5 Uncharacte 100.0 5.9E-42 1.3E-46 345.5 25.1 246 5-288 1-250 (253)
20 PLN02747 N-carbamolyputrescine 100.0 4.9E-42 1.1E-46 353.9 25.0 256 2-287 5-278 (296)
21 PRK00768 nadE NAD synthetase; 100.0 2.7E-42 5.8E-47 342.7 20.4 204 329-588 19-223 (268)
22 cd07580 nitrilase_2 Uncharacte 100.0 9.4E-42 2E-46 346.9 24.6 244 5-283 1-254 (268)
23 cd07564 nitrilases_CHs Nitrila 100.0 1E-41 2.3E-46 351.5 24.4 254 4-289 1-284 (297)
24 PLN02504 nitrilase 100.0 1.9E-41 4.1E-46 354.7 25.0 253 1-289 22-312 (346)
25 cd07581 nitrilase_3 Uncharacte 100.0 1.4E-41 3.1E-46 343.0 23.1 247 6-289 1-253 (255)
26 cd07584 nitrilase_6 Uncharacte 100.0 3.3E-41 7.1E-46 341.0 25.5 246 5-289 1-255 (258)
27 cd07565 aliphatic_amidase alip 100.0 4.9E-41 1.1E-45 344.8 25.4 246 4-286 1-259 (291)
28 cd07585 nitrilase_7 Uncharacte 100.0 3.4E-41 7.3E-46 341.5 23.6 242 5-283 1-247 (261)
29 cd07578 nitrilase_1_R1 First n 100.0 3.3E-41 7.1E-46 341.0 22.8 247 4-288 1-252 (258)
30 cd07579 nitrilase_1_R2 Second 100.0 8.6E-41 1.9E-45 341.1 24.4 236 5-279 1-255 (279)
31 cd07575 Xc-1258_like Xanthomon 100.0 1.2E-40 2.5E-45 335.9 24.4 245 4-289 1-247 (252)
32 PLN02798 nitrilase 100.0 1.8E-40 4E-45 340.5 25.5 253 2-288 9-275 (286)
33 cd07567 biotinidase_like bioti 100.0 1.2E-40 2.5E-45 341.1 22.9 237 5-278 2-279 (299)
34 cd07577 Ph0642_like Pyrococcus 100.0 4.4E-40 9.4E-45 333.0 22.4 237 5-281 1-243 (259)
35 cd07582 nitrilase_4 Uncharacte 100.0 2.4E-39 5.2E-44 333.5 25.2 253 5-284 2-283 (294)
36 cd07197 nitrilase Nitrilase su 100.0 5.9E-39 1.3E-43 322.9 26.6 240 6-284 1-246 (253)
37 cd07574 nitrilase_Rim1_like Un 100.0 3.4E-39 7.3E-44 330.3 24.2 246 4-285 1-269 (280)
38 PRK13287 amiF formamidase; Pro 100.0 6.4E-38 1.4E-42 326.4 25.5 248 2-286 12-271 (333)
39 PRK13286 amiE acylamide amidoh 100.0 5.6E-38 1.2E-42 327.3 23.3 245 3-286 12-272 (345)
40 PRK00876 nadE NAD synthetase; 100.0 3E-38 6.6E-43 323.5 19.9 207 329-589 13-259 (326)
41 PTZ00323 NAD+ synthase; Provis 100.0 3.1E-37 6.8E-42 312.1 19.2 207 325-588 24-231 (294)
42 PRK13980 NAD synthetase; Provi 100.0 9.1E-37 2E-41 308.5 19.7 191 328-588 10-200 (265)
43 cd07571 ALP_N-acyl_transferase 100.0 1.4E-36 3.1E-41 308.9 20.8 223 4-276 1-251 (270)
44 cd00553 NAD_synthase NAD+ synt 100.0 4.1E-36 9E-41 301.3 19.9 196 328-588 3-198 (248)
45 cd07566 ScNTA1_like Saccharomy 100.0 3.2E-35 6.9E-40 301.4 21.4 230 5-248 1-264 (295)
46 KOG0807 Carbon-nitrogen hydrol 100.0 6.1E-36 1.3E-40 281.0 13.9 256 4-290 16-283 (295)
47 KOG0806 Carbon-nitrogen hydrol 100.0 1.4E-31 2.9E-36 264.8 14.3 255 2-290 12-286 (298)
48 TIGR00552 nadE NAD+ synthetase 100.0 4E-30 8.6E-35 258.2 20.1 192 331-588 5-196 (250)
49 PF00795 CN_hydrolase: Carbon- 100.0 4.2E-30 9.1E-35 246.7 13.1 176 5-200 1-186 (186)
50 PRK00302 lnt apolipoprotein N- 100.0 2.4E-28 5.3E-33 269.7 20.1 224 3-275 219-470 (505)
51 TIGR00546 lnt apolipoprotein N 100.0 1.4E-28 3.1E-33 263.3 16.0 204 3-253 159-391 (391)
52 KOG0805 Carbon-nitrogen hydrol 100.0 6.8E-27 1.5E-31 220.4 20.0 247 1-283 15-299 (337)
53 KOG0808 Carbon-nitrogen hydrol 99.9 3.7E-24 8E-29 203.2 17.1 250 2-283 72-355 (387)
54 PRK12291 apolipoprotein N-acyl 99.9 6.1E-24 1.3E-28 227.6 19.9 188 4-235 195-406 (418)
55 COG0815 Lnt Apolipoprotein N-a 99.8 3.2E-19 6.9E-24 194.8 18.4 227 3-262 227-471 (518)
56 PRK13825 conjugal transfer pro 99.8 4.8E-19 1E-23 187.3 17.1 172 21-231 207-387 (388)
57 PF03054 tRNA_Me_trans: tRNA m 99.7 7.9E-18 1.7E-22 174.9 11.3 167 349-580 1-201 (356)
58 COG1606 ATP-utilizing enzymes 99.7 3.2E-17 6.9E-22 157.9 11.9 164 338-577 9-177 (269)
59 COG0482 TrmU Predicted tRNA(5- 99.7 4.1E-16 8.9E-21 159.5 14.2 165 348-579 3-198 (356)
60 TIGR00268 conserved hypothetic 99.7 3.8E-16 8.3E-21 157.1 13.6 162 338-576 4-170 (252)
61 KOG2805 tRNA (5-methylaminomet 99.6 8E-15 1.7E-19 144.0 12.1 165 348-579 5-206 (377)
62 PRK14664 tRNA-specific 2-thiou 99.6 1.5E-14 3.2E-19 151.3 12.8 163 348-579 5-191 (362)
63 TIGR00884 guaA_Cterm GMP synth 99.6 3.7E-14 8.1E-19 146.0 14.4 171 337-576 8-195 (311)
64 PRK14665 mnmA tRNA-specific 2- 99.6 2.7E-14 5.9E-19 149.6 12.8 165 349-579 6-196 (360)
65 cd01997 GMP_synthase_C The C-t 99.5 7.8E-14 1.7E-18 142.3 13.3 162 350-577 1-181 (295)
66 cd01998 tRNA_Me_trans tRNA met 99.5 3.4E-13 7.4E-18 141.7 16.4 164 350-579 1-196 (349)
67 PRK00143 mnmA tRNA-specific 2- 99.5 2.3E-13 5E-18 142.8 15.0 165 349-579 1-195 (346)
68 PLN02347 GMP synthetase 99.5 1.1E-13 2.4E-18 151.9 13.1 172 339-576 219-419 (536)
69 PRK00919 GMP synthase subunit 99.5 5E-13 1.1E-17 136.7 14.8 174 333-577 9-194 (307)
70 TIGR00420 trmU tRNA (5-methyla 99.5 3.8E-13 8.3E-18 141.1 13.7 165 349-579 1-199 (352)
71 PRK00074 guaA GMP synthase; Re 99.4 1.4E-12 3E-17 143.6 14.1 177 331-577 201-396 (511)
72 COG0519 GuaA GMP synthase, PP- 99.4 6.5E-13 1.4E-17 129.2 5.9 163 344-574 17-195 (315)
73 cd01990 Alpha_ANH_like_I This 99.4 4.7E-12 1E-16 123.3 11.8 152 351-576 1-158 (202)
74 PRK01565 thiamine biosynthesis 99.3 8.3E-12 1.8E-16 133.4 11.7 155 349-574 177-343 (394)
75 PRK11106 queuosine biosynthesi 99.2 4.1E-11 8.9E-16 118.0 10.0 158 349-562 2-180 (231)
76 TIGR02432 lysidine_TilS_N tRNA 99.2 6.6E-10 1.4E-14 107.0 14.8 152 350-572 1-173 (189)
77 cd01993 Alpha_ANH_like_II This 99.2 4.7E-10 1E-14 107.4 13.5 152 350-561 1-173 (185)
78 COG0603 Predicted PP-loop supe 99.1 2.3E-10 5E-15 110.1 10.3 162 348-561 2-179 (222)
79 PRK00509 argininosuccinate syn 99.1 5.4E-10 1.2E-14 118.0 13.7 152 348-563 2-167 (399)
80 TIGR00364 exsB protein. This p 99.1 4E-10 8.6E-15 109.7 9.3 165 351-577 1-187 (201)
81 PRK04527 argininosuccinate syn 99.1 1.2E-09 2.6E-14 115.0 13.0 153 349-563 3-169 (400)
82 PRK13820 argininosuccinate syn 99.0 2.4E-09 5.2E-14 113.1 14.3 152 348-562 2-163 (394)
83 PF06508 QueC: Queuosine biosy 99.0 5.4E-10 1.2E-14 108.9 7.2 160 350-561 1-176 (209)
84 PLN00200 argininosuccinate syn 99.0 1.6E-09 3.5E-14 114.6 11.0 161 349-572 6-176 (404)
85 cd01992 PP-ATPase N-terminal d 98.9 1.6E-08 3.4E-13 96.9 13.1 150 350-573 1-170 (185)
86 cd01996 Alpha_ANH_like_III Thi 98.9 2E-08 4.3E-13 93.3 12.0 120 350-529 3-123 (154)
87 TIGR00342 thiazole biosynthesi 98.9 2.1E-08 4.5E-13 106.6 12.9 155 349-574 173-339 (371)
88 KOG1622 GMP synthase [Nucleoti 98.8 6.9E-09 1.5E-13 107.1 8.3 185 337-574 222-416 (552)
89 cd01999 Argininosuccinate_Synt 98.8 3.1E-08 6.7E-13 104.8 13.2 151 351-561 1-162 (385)
90 cd01712 ThiI ThiI is required 98.8 5.9E-08 1.3E-12 92.4 13.0 149 350-569 1-161 (177)
91 PRK14561 hypothetical protein; 98.8 4.6E-08 1E-12 94.5 11.7 135 350-551 2-143 (194)
92 PRK08349 hypothetical protein; 98.8 1.3E-07 2.9E-12 91.7 14.4 157 350-576 2-171 (198)
93 TIGR03573 WbuX N-acetyl sugar 98.7 1.3E-07 2.9E-12 99.4 14.1 129 341-528 50-180 (343)
94 TIGR00032 argG argininosuccina 98.7 7.3E-08 1.6E-12 102.3 10.1 63 350-451 1-64 (394)
95 cd01713 PAPS_reductase This do 98.6 5.7E-07 1.2E-11 84.3 12.7 67 350-451 1-67 (173)
96 PRK08384 thiamine biosynthesis 98.6 7.3E-07 1.6E-11 94.3 13.9 143 349-559 181-336 (381)
97 PRK10696 tRNA 2-thiocytidine b 98.5 1.7E-06 3.6E-11 87.6 14.6 152 348-561 29-196 (258)
98 cd01995 ExsB ExsB is a transcr 98.4 1.5E-06 3.3E-11 82.0 8.9 52 350-439 1-52 (169)
99 KOG0571 Asparagine synthase (g 98.4 3.7E-06 8E-11 86.9 11.9 145 330-528 209-353 (543)
100 cd01991 Asn_Synthase_B_C The C 98.3 2.1E-06 4.5E-11 87.2 9.9 72 339-449 8-79 (269)
101 PRK08576 hypothetical protein; 98.3 5.1E-06 1.1E-10 89.2 12.3 76 332-445 218-293 (438)
102 PF01171 ATP_bind_3: PP-loop f 98.3 4.6E-06 1E-10 79.8 10.7 142 350-561 1-162 (182)
103 TIGR01536 asn_synth_AEB aspara 98.3 7.1E-06 1.5E-10 90.3 12.4 82 330-449 237-319 (467)
104 PF00733 Asn_synthase: Asparag 98.2 8E-06 1.7E-10 81.8 11.0 81 330-449 1-81 (255)
105 PF02568 ThiI: Thiamine biosyn 98.2 5.6E-06 1.2E-10 79.6 9.3 143 349-559 4-160 (197)
106 PRK05253 sulfate adenylyltrans 98.1 6.1E-05 1.3E-09 77.5 14.8 76 338-449 19-94 (301)
107 PRK09431 asnB asparagine synth 98.0 5.2E-05 1.1E-09 84.7 14.0 92 329-448 210-301 (554)
108 PTZ00077 asparagine synthetase 98.0 4.1E-05 8.8E-10 86.0 12.9 149 329-527 220-368 (586)
109 TIGR03108 eps_aminotran_1 exos 98.0 3.1E-05 6.6E-10 88.4 12.1 81 330-449 242-322 (628)
110 PLN02549 asparagine synthase ( 98.0 5.2E-05 1.1E-09 85.0 13.5 146 329-527 208-354 (578)
111 cd01994 Alpha_ANH_like_IV This 98.0 1.5E-05 3.3E-10 76.9 6.9 61 350-448 1-67 (194)
112 COG0037 MesJ tRNA(Ile)-lysidin 97.9 8.7E-05 1.9E-09 76.6 12.4 145 349-561 22-187 (298)
113 PRK01269 tRNA s(4)U8 sulfurtra 97.9 9E-05 1.9E-09 81.7 13.1 144 349-560 178-333 (482)
114 TIGR03679 arCOG00187 arCOG0018 97.9 5E-05 1.1E-09 74.7 9.3 24 425-448 42-65 (218)
115 PRK10660 tilS tRNA(Ile)-lysidi 97.9 0.00012 2.6E-09 79.5 13.1 76 338-448 7-84 (436)
116 TIGR03104 trio_amidotrans aspa 97.8 0.0001 2.2E-09 83.3 11.4 81 330-449 244-327 (589)
117 PRK05370 argininosuccinate syn 97.8 0.00021 4.5E-09 76.0 11.7 67 347-451 10-77 (447)
118 COG0367 AsnB Asparagine syntha 97.7 0.00025 5.5E-09 79.0 12.2 137 329-525 213-349 (542)
119 COG1365 Predicted ATPase (PP-l 97.6 0.0002 4.4E-09 67.9 8.0 156 328-554 32-200 (255)
120 PRK02090 phosphoadenosine phos 97.6 0.0007 1.5E-08 67.8 12.4 73 338-449 31-103 (241)
121 PRK13794 hypothetical protein; 97.5 0.0014 3E-08 72.0 14.4 74 337-448 237-310 (479)
122 COG0137 ArgG Argininosuccinate 97.5 0.00094 2E-08 69.2 12.0 66 348-451 4-70 (403)
123 PF01507 PAPS_reduct: Phosphoa 97.5 0.0014 3E-08 61.7 12.4 64 350-451 1-64 (174)
124 TIGR02039 CysD sulfate adenyly 97.4 0.003 6.5E-08 64.6 14.3 75 339-449 12-86 (294)
125 PRK13795 hypothetical protein; 97.3 0.0012 2.7E-08 75.0 10.4 80 331-449 227-306 (636)
126 COG0301 ThiI Thiamine biosynth 97.2 0.0024 5.3E-08 67.1 11.4 162 349-578 176-357 (383)
127 PRK12563 sulfate adenylyltrans 97.0 0.017 3.8E-07 59.4 14.2 76 338-449 29-104 (312)
128 TIGR00434 cysH phosophoadenyly 96.8 0.016 3.4E-07 56.8 12.4 62 349-448 14-75 (212)
129 PRK08557 hypothetical protein; 96.8 0.0089 1.9E-07 64.3 11.0 81 330-448 161-243 (417)
130 cd01986 Alpha_ANH_like Adenine 96.7 0.0033 7.2E-08 54.0 5.7 18 351-368 1-18 (103)
131 PF00764 Arginosuc_synth: Argi 96.6 0.0043 9.2E-08 65.7 7.0 63 352-452 1-64 (388)
132 COG2117 Predicted subunit of t 96.6 0.0054 1.2E-07 55.9 6.1 60 350-449 2-61 (198)
133 TIGR02057 PAPS_reductase phosp 96.4 0.067 1.4E-06 53.0 13.5 58 348-442 25-82 (226)
134 TIGR00289 conserved hypothetic 96.3 0.011 2.4E-07 58.1 7.4 25 425-449 44-68 (222)
135 COG0175 CysH 3'-phosphoadenosi 95.8 0.11 2.4E-06 52.6 12.2 64 349-450 40-103 (261)
136 TIGR03183 DNA_S_dndC putative 94.6 0.59 1.3E-05 50.8 13.6 68 349-445 14-88 (447)
137 PRK06850 hypothetical protein; 92.7 0.58 1.3E-05 51.5 9.7 84 331-444 18-108 (507)
138 cd01984 AANH_like Adenine nucl 92.7 0.37 8E-06 39.5 6.4 18 351-368 1-18 (86)
139 TIGR00290 MJ0570_dom MJ0570-re 92.2 0.46 9.9E-06 46.8 7.3 22 427-448 46-67 (223)
140 KOG1706 Argininosuccinate synt 89.8 0.7 1.5E-05 46.7 6.0 58 347-444 4-61 (412)
141 COG2102 Predicted ATPases of P 89.5 1.2 2.7E-05 43.3 7.3 64 350-450 2-70 (223)
142 PF01902 ATP_bind_4: ATP-bindi 87.4 0.72 1.6E-05 45.3 4.3 21 428-448 47-67 (218)
143 COG3969 Predicted phosphoadeno 85.4 1.7 3.6E-05 44.9 5.7 59 346-437 25-83 (407)
144 TIGR02055 APS_reductase thiore 83.4 20 0.00044 34.3 12.2 35 413-447 19-53 (191)
145 KOG0573 Asparagine synthase [A 81.9 0.87 1.9E-05 48.5 2.2 22 347-368 249-270 (520)
146 KOG2840 Uncharacterized conser 74.9 11 0.00025 38.7 7.6 74 349-452 52-125 (347)
147 PLN02309 5'-adenylylsulfate re 73.6 17 0.00036 39.9 9.1 33 413-445 136-168 (457)
148 TIGR00424 APS_reduc 5'-adenyly 72.9 18 0.00039 39.8 9.1 33 413-445 141-173 (463)
149 TIGR00542 hxl6Piso_put hexulos 54.2 36 0.00079 34.4 6.9 62 19-85 90-151 (279)
150 PRK13210 putative L-xylulose 5 52.0 41 0.00089 33.9 6.9 61 19-84 90-150 (284)
151 PRK13209 L-xylulose 5-phosphat 51.7 38 0.00082 34.3 6.6 62 19-85 95-156 (283)
152 PRK09856 fructoselysine 3-epim 45.0 67 0.0015 32.2 7.2 63 18-85 85-147 (275)
153 PRK09997 hydroxypyruvate isome 39.3 1.1E+02 0.0024 30.4 7.7 64 17-85 79-142 (258)
154 cd00019 AP2Ec AP endonuclease 39.3 1.2E+02 0.0025 30.7 7.9 62 18-85 80-141 (279)
155 COG1091 RfbD dTDP-4-dehydrorha 38.6 75 0.0016 32.5 6.2 64 175-245 34-108 (281)
156 KOG0733 Nuclear AAA ATPase (VC 38.0 2.9E+02 0.0064 31.5 10.8 39 429-467 238-284 (802)
157 cd07581 nitrilase_3 Uncharacte 37.1 1.2E+02 0.0026 29.9 7.5 72 183-256 22-106 (255)
158 COG1126 GlnQ ABC-type polar am 37.0 81 0.0018 31.1 5.7 77 26-114 144-221 (240)
159 TIGR03381 agmatine_aguB N-carb 36.2 1.2E+02 0.0025 30.5 7.3 71 183-256 24-110 (279)
160 cd07568 ML_beta-AS_like mammal 36.1 1.2E+02 0.0025 30.7 7.4 70 185-256 37-122 (287)
161 PF01261 AP_endonuc_2: Xylose 36.1 39 0.00085 31.9 3.6 63 20-85 68-130 (213)
162 COG2205 KdpD Osmosensitive K+ 35.2 1.5E+02 0.0032 34.8 8.4 74 349-456 249-328 (890)
163 cd07582 nitrilase_4 Uncharacte 35.1 1.1E+02 0.0024 31.2 7.0 66 190-256 41-124 (294)
164 COG4825 Uncharacterized membra 33.5 78 0.0017 32.3 5.1 103 338-452 198-310 (395)
165 TIGR03234 OH-pyruv-isom hydrox 33.3 2.3E+02 0.0049 28.0 8.8 60 21-85 82-141 (254)
166 PLN02798 nitrilase 32.1 1.7E+02 0.0037 29.7 7.8 71 184-256 35-119 (286)
167 cd07572 nit Nit1, Nit 2, and r 31.9 2E+02 0.0043 28.5 8.2 72 184-256 24-109 (265)
168 cd07584 nitrilase_6 Uncharacte 31.7 2.1E+02 0.0045 28.3 8.2 71 184-256 25-111 (258)
169 cd07576 R-amidase_like Pseudom 29.0 2.1E+02 0.0046 28.1 7.7 71 183-256 24-106 (254)
170 COG4598 HisP ABC-type histidin 28.0 2.2E+02 0.0047 27.4 6.8 71 26-107 160-230 (256)
171 cd07566 ScNTA1_like Saccharomy 27.1 2.6E+02 0.0057 28.7 8.1 66 190-256 35-116 (295)
172 PLN00202 beta-ureidopropionase 26.8 2.1E+02 0.0046 30.9 7.6 71 185-256 120-206 (405)
173 PF10087 DUF2325: Uncharacteri 26.2 1.6E+02 0.0034 24.6 5.3 43 188-235 45-87 (97)
174 PRK15018 1-acyl-sn-glycerol-3- 25.7 81 0.0018 31.5 3.9 33 16-48 119-151 (245)
175 KOG3147 6-phosphogluconolacton 24.8 79 0.0017 31.5 3.5 34 325-358 14-49 (252)
176 cd07573 CPA N-carbamoylputresc 24.7 2.5E+02 0.0054 28.2 7.5 72 183-256 24-111 (284)
177 PRK12358 putative 6-phosphoglu 24.5 78 0.0017 31.4 3.6 36 326-363 7-42 (239)
178 PRK12677 xylose isomerase; Pro 24.5 3.3E+02 0.0071 29.2 8.5 77 4-84 81-176 (384)
179 TIGR01198 pgl 6-phosphoglucono 24.4 90 0.002 30.9 4.0 33 327-359 4-38 (233)
180 PF09587 PGA_cap: Bacterial ca 24.4 5E+02 0.011 25.6 9.5 71 161-232 123-225 (250)
181 cd07567 biotinidase_like bioti 24.2 2.6E+02 0.0056 28.9 7.4 17 212-228 90-106 (299)
182 PRK10490 sensor protein KdpD; 24.1 4.8E+02 0.01 31.4 10.7 46 413-458 281-332 (895)
183 COG0363 NagB 6-phosphogluconol 23.9 86 0.0019 31.3 3.7 34 325-358 6-41 (238)
184 PF04273 DUF442: Putative phos 22.5 2.5E+02 0.0054 24.3 5.9 37 413-449 31-67 (110)
185 PRK09762 galactosamine-6-phosp 22.0 94 0.002 30.7 3.6 32 326-359 7-38 (232)
186 TIGR02631 xylA_Arthro xylose i 21.6 4.8E+02 0.01 28.0 9.1 61 19-84 111-177 (382)
187 PRK09989 hypothetical protein; 21.5 2.5E+02 0.0055 27.8 6.7 61 18-84 80-141 (258)
188 cd07197 nitrilase Nitrilase su 21.2 3.4E+02 0.0073 26.4 7.5 69 184-255 24-106 (253)
189 cd07583 nitrilase_5 Uncharacte 20.8 3.8E+02 0.0083 26.3 7.8 70 184-256 25-106 (253)
190 PLN02747 N-carbamolyputrescine 20.6 2.5E+02 0.0054 28.5 6.5 71 183-256 30-116 (296)
191 cd07587 ML_beta-AS mammalian-l 20.2 3.1E+02 0.0067 29.1 7.2 71 185-256 97-185 (363)
No 1
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=1.8e-119 Score=1013.81 Aligned_cols=589 Identities=79% Similarity=1.283 Sum_probs=535.9
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCC
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (591)
|++||||++|++++.+|+++|+++|+++|++|+++||||||||||++|||+|+|++.+.++.+.+++++++|++.+++++
T Consensus 1 ~~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~~~~~L~~La~~a~~~~ 80 (700)
T PLN02339 1 MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTHSWECLAEILVGDLTDG 80 (700)
T ss_pred CceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHHHHHHHHHHHhhcccCC
Confidence 88999999999999999999999999999999999999999999999999999999888888788899999999877889
Q ss_pred eEEEEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccce
Q 007749 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (591)
Q Consensus 81 i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~ 160 (591)
+++++|+|++.++++|||++++.+|+|++.|+|+|||+|++|+|+|||+||+.......|.+|..+..+.++..+|||+.
T Consensus 81 i~vvvG~p~~~~~~lYN~a~vi~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg~~ 160 (700)
T PLN02339 81 ILCDIGMPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDG 160 (700)
T ss_pred eEEEEeeeEEECCeEEEEEEEEeCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccCcc
Confidence 99999999888889999999999999999999999999999999999999985433344666777777778888999999
Q ss_pred eEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCcee
Q 007749 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (591)
Q Consensus 161 v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~ 240 (591)
+|++++++||++||||+|||+.++..++++|||||+|||+||+..||...|++++..++...++.|||+|++|+++++.+
T Consensus 161 ~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~yvyaN~~Ge~~~~lv 240 (700)
T PLN02339 161 YLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLY 240 (700)
T ss_pred eeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcEEEEcCCccCCCceE
Confidence 99999999999999999999866656999999999999999999999999999999999999999999999997767899
Q ss_pred eeccEEEEeCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhhhhccCCCCeeEeeccccCCCcccCCCCCcc
Q 007749 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (591)
Q Consensus 241 f~G~S~I~p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (591)
|+|+|+|.|+|++++++++|+++++++++++||++.++..|.+.++|.+.......+..++++|+++........+.+++
T Consensus 241 f~G~S~I~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (700)
T PLN02339 241 YDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSLSLVPSSPL 320 (700)
T ss_pred EcCceEEeCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhhhhcccccceeEEeeccCCccccccCCCCcc
Confidence 99999999999999999999764457999999999999999998888765443333455677777653221111245677
Q ss_pred ccCCCCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCC
Q 007749 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400 (591)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~ 400 (591)
++.|+.|.+||++++++||||||+++|.+|++||||||+|||++|+||+.||+++++|++.|+++|+.+++|+.+.+..+
T Consensus 321 ~~~~~~p~~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~ 400 (700)
T PLN02339 321 KIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGE 400 (700)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccc
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999998766667
Q ss_pred CCCChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchh
Q 007749 401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG 480 (591)
Q Consensus 401 ~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 480 (591)
+|.+++++++++++||+||+.+||+.|+++|++||+.||++|++|||+++++++.+++..+.|++|.|++.||.+.+|++
T Consensus 401 ~~~~~~~~~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~~~d~~ 480 (700)
T PLN02339 401 VPTDSKEFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNAENLA 480 (700)
T ss_pred cccchhhhhcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCcccchh
Confidence 89999999999999999999999999999999999999999999999999999999999888999999998888788999
Q ss_pred hhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCC
Q 007749 481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGY 560 (591)
Q Consensus 481 ~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~ 560 (591)
+||+|||+||+++|.+||++.+++|+.|+.|||||||+||.++||+|+|||++++++||++|+|++||+|++|+++.++.
T Consensus 481 ~~NiQAR~R~~~l~~~A~l~~~~~~~~g~~LvlgTgN~sE~~~Gy~T~ygd~~~~~~pi~~l~Kt~v~~l~~~~~~~~~~ 560 (700)
T PLN02339 481 LQNIQARIRMVLAFMLASLLPWVRGKSGFLLVLGSANVDEGLRGYLTKYDCSSADINPIGGISKQDLRSFLRWAATNLGY 560 (700)
T ss_pred hhcccHHHHHHHHHHHHhhcchhhccCCceEEEcCCCcchhheeeeeecCCCCcCccccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999667777774599999999999999999999999999999999999999999999988899
Q ss_pred ccccccccCCCCCCcccCCCCcccccccc
Q 007749 561 SSLAEIEAAPPTAELEPIRSNYSQVHKSI 589 (591)
Q Consensus 561 ~i~~~i~~~~psaeL~p~~~~~~q~de~~ 589 (591)
|||++|+++||||||+|+++++.|+||+-
T Consensus 561 ~il~~i~~~~pSaEL~p~~~~~~Q~dE~~ 589 (700)
T PLN02339 561 PSLAEVEAAPPTAELEPIRDDYSQTDEED 589 (700)
T ss_pred CcHHHHhcCCCCcccccCCCCCCCCCHHH
Confidence 99999999999999999887788999863
No 2
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.3e-118 Score=907.92 Aligned_cols=587 Identities=59% Similarity=0.998 Sum_probs=563.0
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCC
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (591)
+|.++||.|++|.+..|+++|.++|++.|++|++.||.+-+-||+-+|||.|+|.|++.+..-++|+.|.+|.+.-...+
T Consensus 2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~HswE~l~~l~~~~~~~~ 81 (706)
T KOG2303|consen 2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLLHSWEMLAELVESPVTQD 81 (706)
T ss_pred CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHHHHHHHHHHHHcCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998767789
Q ss_pred eEEEEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccce
Q 007749 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (591)
Q Consensus 81 i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~ 160 (591)
+.+.+|+|..+++..|||.+++-+|+|+.+++|+.|.+.|.|+|.|||+||.....++.|.+|..++...+|++|||||.
T Consensus 82 il~diGmPv~hr~~ryNCrv~~~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tVPfGda 161 (706)
T KOG2303|consen 82 ILCDIGMPVMHRNVRYNCRVLFLNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETVPFGDA 161 (706)
T ss_pred eeEecCCchhhhhhhhccceeecCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeeecccce
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred eEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCcee
Q 007749 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (591)
Q Consensus 161 v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~ 240 (591)
++++.+.-||.+||+++|.|.++...++++|+||++|.|.|+..++|.+.|..++...+.++|..|+|+|+-|++|++++
T Consensus 162 vl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYlyaNqrGCDG~RlY 241 (706)
T KOG2303|consen 162 VLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYLYANQRGCDGDRLY 241 (706)
T ss_pred eeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccEEEEeCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhhhhccCCCCeeEeeccccCCCcccCCCCCcc
Q 007749 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (591)
Q Consensus 241 f~G~S~I~p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (591)
|+|+|+|+-||+++||+.+|+-+|.++++|.||++.++..|...++.+.++..+..++.+.|+|+++........+..|+
T Consensus 242 ydGca~Ia~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~ 321 (706)
T KOG2303|consen 242 YDGCAMIAMNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPI 321 (706)
T ss_pred ecchhheeecceeeeecccccccceEEEEEEecHHHHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCc
Confidence 99999999999999999999999999999999999999999887887766666677999999999886544334566788
Q ss_pred ccCCCCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCC
Q 007749 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400 (591)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~ 400 (591)
+...++|+|||..+++||||||||++|..||+|+||||+||+.+|+||+.||++|++|+.+|+++|+.|++++..+ .++
T Consensus 322 e~~~hsPeeEia~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~ 400 (706)
T KOG2303|consen 322 EWKYHSPEEEIALGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISY 400 (706)
T ss_pred ccccCCcHHHhccCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCc
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999866 568
Q ss_pred CCCChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchh
Q 007749 401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLG 480 (591)
Q Consensus 401 ~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 480 (591)
.|.+|+++|++.+++|||.|.+||++|+.+|++||+.+|..|..|+|+.++.++++.|.-++|..|.|++.||++++.++
T Consensus 401 ~p~dp~~l~nri~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggsn~enla 480 (706)
T KOG2303|consen 401 TPTDPADLCNRILYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGSNRENLA 480 (706)
T ss_pred CCCCHHHHHHhhhhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCchhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCC
Q 007749 481 LQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGY 560 (591)
Q Consensus 481 ~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~ 560 (591)
+||||||+||++.|.+||+++|..++.|++||||+.|.||..+||.|||++++++++|||+++|+++|++++|+.+++|+
T Consensus 481 LQNiQARiRMvLaylfAqL~~wvr~~~GglLVLGSaNVDE~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a~~~~~l 560 (706)
T KOG2303|consen 481 LQNIQARIRMVLAYLFAQLLLWVRGRPGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYAKEKFGL 560 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCccchHhhhhhhhccccccccCCccCccHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCcccCCC-Cccccccc
Q 007749 561 SSLAEIEAAPPTAELEPIRS-NYSQVHKS 588 (591)
Q Consensus 561 ~i~~~i~~~~psaeL~p~~~-~~~q~de~ 588 (591)
|++++|++.||||||.|+.+ ++.|+||.
T Consensus 561 p~L~~il~a~pTAELePl~~g~~~QtDE~ 589 (706)
T KOG2303|consen 561 PALQSILDAPPTAELEPLTDGDYSQTDEA 589 (706)
T ss_pred hHHHHHhcCCCcccccccccCcccccchh
Confidence 99999999999999999985 89999985
No 3
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=1e-96 Score=832.21 Aligned_cols=528 Identities=25% Similarity=0.359 Sum_probs=444.8
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCe
Q 007749 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGI 81 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i 81 (591)
.+||||++|++++++|+++|+++|.+++++|+++|||||||||+++|||+++|++.+..+.+.+.+.++.|++.++++++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~~~~~l~~L~~~a~~~~i 90 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDAVEDALATLVEASADLDP 90 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHhhHHHHHHHHHHHhhcCE
Confidence 46999999999999999999999999999999999999999999999999999988877777777888999988888999
Q ss_pred EEEEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccc-e
Q 007749 82 LCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY-G 160 (591)
Q Consensus 82 ~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~-~ 160 (591)
++++|+|++.++++|||+++|++|+|++.|+|+|||+|++|+|+|||++|+.... ....+ .+..+|||+ .
T Consensus 91 ~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~--------~~~~~-~g~~vpfG~~~ 161 (679)
T PRK02628 91 LLVVGAPLRVRHRLYNCAVVIHRGRILGVVPKSYLPNYREFYEKRWFAPGDGARG--------ETIRL-CGQEVPFGTDL 161 (679)
T ss_pred EEEEeeEEEECCEEEEEEEEEcCCEEEEEeccccCCCCCcccccccccCCCCCCC--------ceEee-cCeeeccCCce
Confidence 9999999888899999999999999999999999999999999999999986310 00012 345899995 6
Q ss_pred eEEe---CCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcC-CCCCC
Q 007749 161 FIQF---LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDG 236 (591)
Q Consensus 161 v~~~---~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~-~G~~~ 236 (591)
+|++ +++|||++||||+|||+.+.+.++++|||||++||+||+..++...|+.+++++|.+++++|||+|+ +|.++
T Consensus 162 vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~~ 241 (679)
T PRK02628 162 LFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGEST 241 (679)
T ss_pred eEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccCC
Confidence 7776 6899999999999999877789999999999999999999999888888899999999999999987 55555
Q ss_pred CceeeeccEEEEeCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhhhhc---cCCCCeeEeeccccCCCccc
Q 007749 237 GRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASC---KTKIPSVAVPYNLCQPFNLK 313 (591)
Q Consensus 237 ~~~~f~G~S~I~p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 313 (591)
++.+|+|+|+|+++|++++++++|+++ +++++++||++.++..|.+.+.+.+.... ...+. +++|+++.+.. .
T Consensus 242 ~~~vf~G~S~I~~~G~vla~a~~f~~~-e~l~~adiDl~~v~~~R~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~-~ 317 (679)
T PRK02628 242 TDLAWDGQTLIYENGELLAESERFPRE-EQLIVADVDLERLRQERLRNGSFDDNARHRDESAPFR--TIPFALDPPAG-D 317 (679)
T ss_pred CCeEEeCeEEEEcCCeEEEecCCCCCC-CcEEEEEEcHHHHHHHHhhcCCcccchhcccccCCce--EEEeeccCCcc-c
Confidence 679999999999999999999999764 57999999999999999887877654311 11233 34555543221 1
Q ss_pred CCCCCccccCCCCCH---------HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCch
Q 007749 314 MSLSSPLKINYHSPE---------EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDE 384 (591)
Q Consensus 314 ~~~~~~~~~~~~~~~---------~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~ 384 (591)
..+.+++++.||.|. ++++.+++.||+||++++|.++++||||||+||+++|+++ ++++
T Consensus 318 ~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~-------~~a~----- 385 (679)
T PRK02628 318 LGLRRPVERFPFVPSDPARLDQRCYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVA-------AKAM----- 385 (679)
T ss_pred ccccCcCCCCCCCCcChhhhhhhHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHH-----
Confidence 123456777777665 7899999999999999999999999999999999988887 4553
Q ss_pred hHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCC
Q 007749 385 QVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 464 (591)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~ 464 (591)
++++..+ .+|++|+||+.++++.|.++|+++|+.||++|++|+|+++++.+...+...++
T Consensus 386 ------~~lg~~~-------------~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~~~~~~~~~~l~~~~~- 445 (679)
T PRK02628 386 ------DRLGLPR-------------KNILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHPFA- 445 (679)
T ss_pred ------HhhCCCc-------------ceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcHHHHHHHHHHhccccc-
Confidence 1233110 16999999999999999999999999999999999999999887665543211
Q ss_pred CCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhccccccc-CCCCCCCcCCCCCc
Q 007749 465 RPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKY-DCSSADINPIGSIS 543 (591)
Q Consensus 465 ~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~-gd~~~~~~Pl~~l~ 543 (591)
++.+.+|+++||+|||+||.+||.+| |+.|+ +||||||+||.++||+|+| ||++++++||+||+
T Consensus 446 -------~~~~~~~~t~~N~qaR~R~~~L~~~A-------n~~g~-lvl~Tgn~sE~~~Gy~T~~~GD~~~~~~~~~~l~ 510 (679)
T PRK02628 446 -------RGEPVYDVTFENVQAGERTQILFRLA-------NQHGG-IVIGTGDLSELALGWCTYGVGDHMSHYNVNASVP 510 (679)
T ss_pred -------cCCcccchhhhhhhHHHHHHHHHHHH-------hhcCc-EEEcCCchhhHHhCceecCCCCcccccccccCCc
Confidence 11234689999999999999999665 45575 9999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhc--C---CccccccccCCCCCCcccC-C-CCcccccccc
Q 007749 544 KQDLRTFLRWAATHL--G---YSSLAEIEAAPPTAELEPI-R-SNYSQVHKSI 589 (591)
Q Consensus 544 K~~v~~l~~~~~~~~--~---~~i~~~i~~~~psaeL~p~-~-~~~~q~de~~ 589 (591)
||+||+|+||++++. + .+||++|++|||||||+|. . ++++|+||+.
T Consensus 511 Kt~v~~l~~~~~~~~~~~~~~~~ip~~i~~~~psaeL~p~~~~g~~~q~ded~ 563 (679)
T PRK02628 511 KTLIQHLIRWVIASGQFDEAVSEVLLDILDTEISPELVPADKEGEIVQSTEDI 563 (679)
T ss_pred HHHHHHHHHHHHhhccccccchhhHHHHhcCCCCccccCCCCCCCCCCcchhc
Confidence 999999999986542 2 2588999999999999997 3 4678999975
No 4
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=1.5e-88 Score=752.92 Aligned_cols=460 Identities=29% Similarity=0.386 Sum_probs=405.5
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEE
Q 007749 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (591)
Q Consensus 4 ~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~i 83 (591)
||||++|+++.++|++.|+++|.+++++|+++|||||||||+++|||.+.|++..+.+...+.+.+.+|++.++ +++.+
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~La~~~~-~~i~i 79 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFLAACEAALERLAAATA-GGPAV 79 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHHHHHHHHHHHHHHhcC-CCCEE
Confidence 79999999999999999999999999999999999999999999999999987777777777888999999876 79999
Q ss_pred EEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccceeEE
Q 007749 84 SFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (591)
Q Consensus 84 ivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~~ 163 (591)
++|++++.++++||++++|++|++++.|+|+|||++++|+|.+||++|+.. .+|+
T Consensus 80 i~G~~~~~~~~~yNsa~vi~~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~~-------------------------~~~~ 134 (540)
T PRK13981 80 LVGHPWREGGKLYNAAALLDGGEVLATYRKQDLPNYGVFDEKRYFAPGPEP-------------------------GVVE 134 (540)
T ss_pred EEeCcEeeCCcEEEEEEEEECCeEEEEEeeeeCCCCCCcCccccccCCCCc-------------------------eEEE
Confidence 999998888999999999999999999999999999999999999999764 2789
Q ss_pred eCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeec
Q 007749 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDG 243 (591)
Q Consensus 164 ~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G 243 (591)
++++|||++||+|+|||+ +.+.++.+|||+|++|++|++..++...|..+++.||.||+++++++|++|.+ ++.+|+|
T Consensus 135 ~~g~rigv~IC~D~~~pe-~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~-~~~~f~G 212 (540)
T PRK13981 135 LKGVRIGVPICEDIWNPE-PAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQ-DELVFDG 212 (540)
T ss_pred ECCEEEEEEEehhhcCCc-HHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCC-CceEEeC
Confidence 999999999999999997 78899999999999999999988887778889999999999999999999988 7889999
Q ss_pred cEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhhhhccCCCCeeEeeccccCCCcccCCCCCcccc
Q 007749 244 CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKI 322 (591)
Q Consensus 244 ~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (591)
+|+|+ |+|+++++++.|++ +++++++|++.. .|+.. + .+..+
T Consensus 213 ~S~i~dp~G~il~~~~~~~e---~~l~~did~~~~--------~~~~~------------~--------------~~~~~ 255 (540)
T PRK13981 213 ASFVLNADGELAARLPAFEE---QIAVVDFDRGED--------GWRPL------------P--------------GPIAP 255 (540)
T ss_pred ceEEECCCCCEeeecCCCCC---cEEEEEEeecCC--------CcccC------------C--------------CCCCC
Confidence 99999 99999999998853 688999998631 11110 0 00001
Q ss_pred CCCCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCC
Q 007749 323 NYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFP 402 (591)
Q Consensus 323 ~~~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~ 402 (591)
+....++++++++.||+||++++|.++++||||||+|||++|+|+ ++++ +++
T Consensus 256 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la-------~~a~--------------g~~------ 307 (540)
T PRK13981 256 -PPEGEAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIA-------VDAL--------------GAE------ 307 (540)
T ss_pred -CCChHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHh--------------CcC------
Confidence 123467899999999999999999999999999999999999987 4553 322
Q ss_pred CChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhh
Q 007749 403 TDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQ 482 (591)
Q Consensus 403 ~~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 482 (591)
+|++++||+.++++.+.++|+++|+.||++|++|+|+++++++.+.+...++. ...+++.+
T Consensus 308 ---------~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~----------~~~~~~~~ 368 (540)
T PRK13981 308 ---------RVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEAALAPLFAG----------TEPDITEE 368 (540)
T ss_pred ---------cEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhhcC----------CCCCchHH
Confidence 59999999999999999999999999999999999999999987766653221 12478999
Q ss_pred hhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhc-CCc
Q 007749 483 NIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHL-GYS 561 (591)
Q Consensus 483 N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~-~~~ 561 (591)
|+|||+||.++|.+|+.. |+ +|+||||+||.++||+|+|||++++++||+||+|++||+|++|+++.. +.+
T Consensus 369 N~~ar~R~~~l~~~a~~~-------~~-lvlgt~n~sE~~~Gy~t~~GD~~~~~~pi~~l~K~~v~~la~~~~~~~~~~~ 440 (540)
T PRK13981 369 NLQSRIRGTLLMALSNKF-------GS-LVLTTGNKSEMAVGYATLYGDMAGGFAPIKDVYKTLVYRLCRWRNTVSPGEV 440 (540)
T ss_pred HHHHHHHHHHHHHHHhcc-------CC-EEEeCCccCHHHcCCeEecCCcccCccccCCCCHHHHHHHHHHHHhhcCCCc
Confidence 999999999999777644 64 999999999999999999999999999999999999999999987643 346
Q ss_pred cccccccCCCCCCcccCCCCccccccc
Q 007749 562 SLAEIEAAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 562 i~~~i~~~~psaeL~p~~~~~~q~de~ 588 (591)
+|+.|++|||||||+| .|+||+
T Consensus 441 vp~~i~~~~psa~l~~-----~q~de~ 462 (540)
T PRK13981 441 IPERIITKPPSAELRP-----NQTDQD 462 (540)
T ss_pred chHHHhCCCCCCCCCC-----CCcCcc
Confidence 8899999999999998 588876
No 5
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=3.8e-47 Score=385.02 Aligned_cols=251 Identities=35% Similarity=0.509 Sum_probs=227.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
|||++|+++..+|+++|++++.+++++|+++|+|||||||+++|||.+.+.+....+.+...+.++.|++.+++++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~la~~~~~~~i~ii 80 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEAAEEALEELAAATADLDIAVV 80 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHHHHHHHHHHHHhcccCCcEEE
Confidence 69999999999999999999999999999999999999999999999887766666666677889999998888899999
Q ss_pred EcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccceeEEe
Q 007749 85 FGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQF 164 (591)
Q Consensus 85 vG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~~~ 164 (591)
+|++++.++++||++++|.+|++++.|+|+||+++++|.|.+||++|+.. .+|++
T Consensus 81 ~G~~~~~~~~~yNs~~~i~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~-------------------------~~~~~ 135 (261)
T cd07570 81 VGLPLRHDGKLYNAAAVLQNGKILGVVPKQLLPNYGVFDEKRYFTPGDKP-------------------------DVLFF 135 (261)
T ss_pred EeceEecCCCEEEEEEEEeCCEEEEEEECccCcCCccccccccCccCCCC-------------------------CeEEE
Confidence 99999888899999999999999999999999999999999999999864 28999
Q ss_pred CCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeecc
Q 007749 165 LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGC 244 (591)
Q Consensus 165 ~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~ 244 (591)
+++|||++||+|.|||+.+.|.++++|||+|++|+++++..++..+|..++++||.+|+++++++|++|.. ++..|.|+
T Consensus 136 ~~~~ig~~IC~D~~fpe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~-~~~~~~G~ 214 (261)
T cd07570 136 KGLRIGVEICEDLWVPDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQ-DDLVFDGG 214 (261)
T ss_pred CCEEEEEEeecccCCCCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCC-ceEEEECc
Confidence 99999999999999998658899999999999999999877777677788999999999999999999987 67889999
Q ss_pred EEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCc
Q 007749 245 SCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (591)
Q Consensus 245 S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~ 286 (591)
|+|+ |+|+++++++.+ +.+++++|++.++..|.+.+.
T Consensus 215 S~ii~p~G~vl~~~~~~-----~~~~~~id~~~~~~~r~~~~~ 252 (261)
T cd07570 215 SFIADNDGELLAEAPRF-----EEDLADVDLDRLRSERRRNSS 252 (261)
T ss_pred eEEEcCCCCEEEecCcc-----eEEEEEEEEecCcccccccCC
Confidence 9999 999999998864 467899999999888876543
No 6
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=2e-44 Score=368.65 Aligned_cols=253 Identities=21% Similarity=0.249 Sum_probs=209.5
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHH-----HHHHHHHHhcccC
Q 007749 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-----WECLKDLLLGDWT 78 (591)
Q Consensus 4 ~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~-----~~~l~~la~~~~~ 78 (591)
||||++|+++. +|+++|++++.+++++|+++|||||||||++++||.+.+.. ..+.+.+ ...++.|++.+++
T Consensus 1 ~~ia~~Q~~~~-~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~--~~~~~~a~~~~~~~~~~~l~~~a~~ 77 (279)
T TIGR03381 1 VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQD--EDYFALAQPVEGHPAIKRFQALAKE 77 (279)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccc--cchHhhcCcCCCChHHHHHHHHHHH
Confidence 69999999986 99999999999999999999999999999999999876531 1111111 1233444444446
Q ss_pred CCeEEEEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccc
Q 007749 79 DGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (591)
Q Consensus 79 ~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~ 157 (591)
+++++++|++++.++++|||+++|+ +|++++.|+|+|||....|.|++||++|+...
T Consensus 78 ~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~---------------------- 135 (279)
T TIGR03381 78 LGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGF---------------------- 135 (279)
T ss_pred cCcEEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCC----------------------
Confidence 8999999999888889999999997 89999999999998766678999999997421
Q ss_pred cceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccc-----cchhHHHHHHHHHHHHcCcEEEEEcCC
Q 007749 158 GYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-----RKLDYRIRAFISATHSRGGVYMYSNHQ 232 (591)
Q Consensus 158 G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~-----gk~~~r~~l~~~~a~e~~~~~v~aN~~ 232 (591)
.+|+++++|+|++||||+|||+ ..|.++++|||+|++|++|+... .....|..++++||.+|+++++++|++
T Consensus 136 --~~f~~~~~~ig~~IC~D~~fpe-~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~ 212 (279)
T TIGR03381 136 --KVWDTRYGRIGVGICWDQWFPE-TARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRI 212 (279)
T ss_pred --ceEecCCceEEEEEEcCCcChH-HHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 2899999999999999999996 68899999999999999975421 222356677889999999999999999
Q ss_pred CCC---CCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCch
Q 007749 233 GCD---GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (591)
Q Consensus 233 G~~---~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~ 287 (591)
|.+ +++..|.|.|+|+ |+|+++++++.++ +++++++||++.++..|...+.+
T Consensus 213 G~~~~~~~~~~~~G~S~i~~p~G~il~~~~~~~---e~~~~~~id~~~~~~~r~~~~~~ 268 (279)
T TIGR03381 213 GTEVGDGGEQTFYGSSFIADHTGELVAEAGRSE---EAVLVATFDLDEIAKQRAAWGFF 268 (279)
T ss_pred cccCCCCCcceEeeeEEEECCCCcEeecCCCCC---CceEEEEeCHHHHHHHHhcCchh
Confidence 987 2467899999999 9999999998774 37999999999999988775554
No 7
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=6.2e-44 Score=360.17 Aligned_cols=246 Identities=15% Similarity=0.158 Sum_probs=201.8
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCC
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (591)
|++||||++|+++..+|++.|++++.+++++| +|||||||||+++|||...+...... .....+.|+++|+ +++
T Consensus 1 m~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~~~~~-~~~~~~~l~~~A~---~~~ 74 (256)
T PRK10438 1 MSGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAASSLP-QDDVVAWMTAKAQ---QTN 74 (256)
T ss_pred CCCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchhhccc-cchHHHHHHHHHH---HcC
Confidence 88999999999998899999999999999876 69999999999999998765321110 1234455666666 467
Q ss_pred eEEEEcce-eeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCcccccc
Q 007749 81 ILCSFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFG 158 (591)
Q Consensus 81 i~iivG~~-~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G 158 (591)
+ +++|.+ ++.++++|||+++|+ +|. ++.|+|+||++. +.|.+||+||+..
T Consensus 75 ~-~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~~------------------------ 126 (256)
T PRK10438 75 A-LIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNAR------------------------ 126 (256)
T ss_pred e-EEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCCc------------------------
Confidence 6 456765 445678999999998 565 689999999653 4689999999864
Q ss_pred ceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCc
Q 007749 159 YGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238 (591)
Q Consensus 159 ~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~ 238 (591)
.+|+++++|||++||||+|||| ..|.+ +|||+|++|++||.... ..|..++++||.||+++++++|++|.+++.
T Consensus 127 -~v~~~~~~~iG~~ICyD~~fPe-~~r~l--~gad~i~~~s~~~~~~~--~~~~~~~~aRA~En~~~vv~~n~~G~~~~~ 200 (256)
T PRK10438 127 -VIVEWRGWRILPLVCYDLRFPV-WSRNR--NDYDLALYVANWPAPRS--LHWQTLLTARAIENQAYVAGCNRVGSDGNG 200 (256)
T ss_pred -eEEEECCEEEEEEEEeecCCHH-HHHhh--cCCCEEEEecCCCCCch--HHHHHHHHHHHHhcCcEEEEecccccCCCC
Confidence 2899999999999999999996 55554 89999999999986433 356677899999999999999999987545
Q ss_pred eeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 239 LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 239 ~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
..|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|...+.+++
T Consensus 201 ~~~~G~S~ivdP~G~vl~~~~~~~---e~~i~~~idl~~~~~~R~~~~~l~~ 249 (256)
T PRK10438 201 HHYRGDSRIINPQGEIIATAEPHQ---ATRIDAELSLEALQEYREKFPAWRD 249 (256)
T ss_pred CEEcCceEEECCCCcEEEEcCCCC---cEEEEEEECHHHHHHHHHhCCcccc
Confidence 7899999999 9999999988764 3799999999999999987666544
No 8
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=3.9e-44 Score=376.67 Aligned_cols=257 Identities=16% Similarity=0.079 Sum_probs=207.7
Q ss_pred CceEEEEEecCCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc--ccchhhHHH--HHHHH
Q 007749 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF--LELDTVTHA--WECLK 70 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~-------~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~--~~~~~~~~~--~~~l~ 70 (591)
+.||||++|+++.. +|+++|++++.+++++|+++|||||||||++++||...... ....+.+.. .+.++
T Consensus 62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~ 141 (363)
T cd07587 62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTK 141 (363)
T ss_pred ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHH
Confidence 46999999998543 69999999999999999999999999999999998632110 011111111 12333
Q ss_pred HHHhcccCCCeEEEEcceeee---CCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhh
Q 007749 71 DLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (591)
Q Consensus 71 ~la~~~~~~~i~iivG~~~~~---~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~ 146 (591)
.|++.+++++++|++|+.++. ++++|||+++|+ +|+|++.|+|+|||.++.|.|++||.+|+...
T Consensus 142 ~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~----------- 210 (363)
T cd07587 142 FCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGH----------- 210 (363)
T ss_pred HHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCC-----------
Confidence 444444468999998988775 368999999998 89999999999999887789999999997521
Q ss_pred HhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEE
Q 007749 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVY 226 (591)
Q Consensus 147 ~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~ 226 (591)
.+|+++++|||++||||+|||+ .+|.++++|||||++|++|+....+ ..|..++++||.+|++++
T Consensus 211 -------------~vf~t~~griG~~ICyD~~fPe-~~r~la~~GAdiil~Psa~~~~~~~-~~w~~~~rarAieN~~fV 275 (363)
T cd07587 211 -------------PVFETQFGKIAVNICYGRHHPL-NWLMYGLNGAEIVFNPSATVGALSE-PMWPIEARNAAIANSYFT 275 (363)
T ss_pred -------------ceEEcCCceEEEEEecccCCcH-HHHHHHHcCCcEEEECCCcCCCCch-HHHHHHHHHHHHhcCcEE
Confidence 2899999999999999999996 6889999999999999999865443 356677899999999999
Q ss_pred EEEcCCCCCC---------------CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCch
Q 007749 227 MYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (591)
Q Consensus 227 v~aN~~G~~~---------------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~ 287 (591)
+++|++|.+. +...|.|+|+|+ |+|+++++++.+. +++++++||++.+++.|.+++.+
T Consensus 276 v~~NrvG~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~---E~ll~adiDl~~i~~~R~~~~~~ 349 (363)
T cd07587 276 VGINRVGTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRTPGLSRTR---DGLLVAELDLNLCRQVKDKWGFR 349 (363)
T ss_pred EEeccccccccccccccccccccccccccccceeEEECCCCCCccCCCCCC---CcEEEEEecHHHHHHHHhcCCCC
Confidence 9999999652 114689999999 9999998886553 37999999999999888875544
No 9
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=4.3e-44 Score=361.08 Aligned_cols=248 Identities=23% Similarity=0.241 Sum_probs=210.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
|||++|+++..+|+++|++++.+++++|+++|+|||||||+++|||.+.+.+.+.. .....+.++.|.+.+++++++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~~~ii 79 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLA-EPADGPALQALRAIARRHGIAIV 79 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhhh-cccCChHHHHHHHHHHHcCCEEE
Confidence 79999999989999999999999999999999999999999999999876543321 11111234444444456899999
Q ss_pred EcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccceeEE
Q 007749 85 FGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (591)
Q Consensus 85 vG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~~ 163 (591)
+|++++.++++|||+++|+ +|++++.|+|.||++ +.|.+||++|+.. .+|+
T Consensus 80 ~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~---~~E~~~~~~G~~~-------------------------~v~~ 131 (254)
T cd07576 80 VGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG---DSERAAFTPGDRF-------------------------PVVE 131 (254)
T ss_pred EeccccCCCceEEEEEEECCCCCEeeEEEeeccCC---cchhhhccCCCCc-------------------------eEEE
Confidence 9999988899999999997 799999999999986 3588999999764 2899
Q ss_pred eCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeec
Q 007749 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDG 243 (591)
Q Consensus 164 ~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G 243 (591)
++++|||++||+|+|||+ +.+.++++|||+|++|++++...+ ..|..+++.||.+|+++++++|++|.+ ++..|.|
T Consensus 132 ~~~~kig~~IC~D~~fpe-~~~~~~~~gadii~~p~~~~~~~~--~~~~~~~~~rA~en~~~vv~an~~G~~-~~~~~~G 207 (254)
T cd07576 132 LRGLRVGLLICYDVEFPE-LVRALALAGADLVLVPTALMEPYG--FVARTLVPARAFENQIFVAYANRCGAE-DGLTYVG 207 (254)
T ss_pred ECCeEEEEEEeecCCCCH-HHHHHHHCCCCEEEECCccCCCcc--hhhhhhhHHHHHhCCCEEEEEcccCCC-CCceeee
Confidence 999999999999999996 788999999999999998876555 346678899999999999999999988 6678999
Q ss_pred cEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 244 CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 244 ~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
+|+|+ |+|+++++++.+ +++++++||++.++..|.+.+.+.+
T Consensus 208 ~S~i~~p~G~il~~~~~~----e~~~~~~id~~~~~~~R~~~~~~~~ 250 (254)
T cd07576 208 LSSIAGPDGTVLARAGRG----EALLVADLDPAALAAARRENPYLAD 250 (254)
T ss_pred eeEEECCCCCEeEecCCC----CeEEEEEcCHHHHHhhhhcCchhhh
Confidence 99999 999999999875 2699999999999999987555443
No 10
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=9.5e-44 Score=361.75 Aligned_cols=252 Identities=24% Similarity=0.328 Sum_probs=216.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
|||++|+++..+|++.|++++.+++++|+++|||||||||+++|||.+.+.+.+.. .....+.++.|++.+ .++.++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~a--~~~~ii 77 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVA-MHADDPRLQALAEAS--GGICVV 77 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhh-cccchHHHHHHHHHc--CCCEEE
Confidence 69999999999999999999999999999999999999999999999876543211 112335677787764 279999
Q ss_pred Ecceeee-CCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccceeEE
Q 007749 85 FGMPVIK-GSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (591)
Q Consensus 85 vG~~~~~-~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~~ 163 (591)
+|++++. ++++||++++|.+|+++++|+|+|||+++.|.|.+||++|+.. .+|+
T Consensus 78 ~G~~~~~~~~~~yNt~~vi~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~~-------------------------~vf~ 132 (269)
T cd07586 78 FGFVEEGRDGRFYNSAAYLEDGRVVHVHRKVYLPTYGLFEEGRYFAPGSHL-------------------------RAFD 132 (269)
T ss_pred EeCeEEcCCCcEEEEEEEecCCEEEEEEEeEeCCCCCccceeeeecCCCcc-------------------------eEEE
Confidence 9999876 4899999999999999999999999988878899999999864 2899
Q ss_pred eCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccc-----cchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCc
Q 007749 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-----RKLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238 (591)
Q Consensus 164 ~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~-----gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~ 238 (591)
++++|||++||+|+|||+ ..+.++.+|||+|++|+++++.. +...+|..+.+.||.+++++++++|++|.+ +.
T Consensus 133 ~~~~~ig~~IC~D~~fp~-~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~-~~ 210 (269)
T cd07586 133 TRFGRAGVLICEDAWHPS-LPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVE-DG 210 (269)
T ss_pred eCCeEEEEEEEeccCCcH-HHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCc-CC
Confidence 999999999999999996 66789999999999999988742 223456778899999999999999999998 56
Q ss_pred eeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 239 LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 239 ~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
..|.|+|+|+ |+|+++++.+.++ +++++++||++.+++.|.+.+.+++
T Consensus 211 ~~~~G~S~ii~p~G~il~~~~~~~---~~~~~~~id~~~~~~~r~~~~~~~~ 259 (269)
T cd07586 211 VYFWGGSRVVDPDGEVVAEAPLFE---EDLLVAELDRSAIRRARFFSPTFRD 259 (269)
T ss_pred ceEeCCcEEECCCCCEEEecCCcc---ccEEEEEecHHHHHHHHhhCccccc
Confidence 7788999999 9999999998775 3699999999999988887666543
No 11
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=2.5e-43 Score=362.06 Aligned_cols=256 Identities=20% Similarity=0.172 Sum_probs=211.2
Q ss_pred CceEEEEEecCCC-------CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHH-----HHH
Q 007749 2 RLLKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAW-----ECL 69 (591)
Q Consensus 2 ~~~kVAl~Q~~~~-------~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~-----~~l 69 (591)
|.||||++|+++. .++.+.|++++.+++++|+++|||||||||++++||.+.+.. ..+.+.+. +.+
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~--~~~~~~~~~~~~~~~~ 79 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQD--TKWYEFAEEIPNGPTT 79 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccc--cchhhhcccCCCChHH
Confidence 6899999999975 489999999999999999999999999999999999765421 11111111 234
Q ss_pred HHHHhcccCCCeEEEEcceeee-CCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhH
Q 007749 70 KDLLLGDWTDGILCSFGMPVIK-GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEIS 147 (591)
Q Consensus 70 ~~la~~~~~~~i~iivG~~~~~-~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~ 147 (591)
+.|++.++++++++++|+.++. ++++||++++|+ +|++++.|+|+|||++++|.|.+||++|+...
T Consensus 80 ~~l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~------------ 147 (287)
T cd07568 80 KRFAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGY------------ 147 (287)
T ss_pred HHHHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCC------------
Confidence 4455555568999999987764 578999999998 89999999999999999899999999997421
Q ss_pred hhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEE
Q 007749 148 VALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYM 227 (591)
Q Consensus 148 ~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v 227 (591)
.+|+++++|||++||||+|||+ ..|.++++|||+|++|++++....+ ..|..+.++||.+|+++++
T Consensus 148 ------------~~f~~~~~~iG~~ICyD~~fpe-~~r~la~~Ga~li~~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv 213 (287)
T cd07568 148 ------------PVFDTAFGKIGVYICYDRHFPE-GWRALGLNGAEIVFNPSATVAGLSE-YLWKLEQPAAAVANGYFVG 213 (287)
T ss_pred ------------ceEEcCCceEEEEEEecccCch-HHHHHHHCCCeEEEECCcCCCCCch-hhhHHHHHHHHHHCCcEEE
Confidence 2899999999999999999996 6889999999999999998865433 2444567899999999999
Q ss_pred EEcCCCCCCC--ceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchh
Q 007749 228 YSNHQGCDGG--RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (591)
Q Consensus 228 ~aN~~G~~~~--~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~ 288 (591)
++|++|.+.. ...|.|.|+|+ |+|+++++++.++ +++++++||++.++..|.+.+.+.
T Consensus 214 ~~N~~G~~~~~~~~~~~G~S~ii~p~G~il~~~~~~~---~~~l~a~id~~~~~~~R~~~~~~~ 274 (287)
T cd07568 214 AINRVGTEAPWNIGEFYGSSYFVDPRGQFVASASRDK---DELLVAELDLDLIREVRDTWQFYR 274 (287)
T ss_pred EeccccccCCCccceEeceeEEECCCceEEEecCCCC---CeEEEEEecHHHHHHHHhhCchhh
Confidence 9999997632 25789999999 9999999998774 379999999999998887654443
No 12
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-43 Score=350.82 Aligned_cols=205 Identities=37% Similarity=0.489 Sum_probs=174.1
Q ss_pred HHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 007749 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (591)
.++.+.+++.||++|++++|.+++|||||||+|||++++|+ ++|++.+. ..+
T Consensus 5 ~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La-------~~A~~~~~----------~~~----------- 56 (268)
T COG0171 5 LEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALA-------VRALGKGD----------SKE----------- 56 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHH-------HHHhcccc----------chh-----------
Confidence 46788999999999999999999999999999999999998 67763210 011
Q ss_pred hhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 408 ~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
++.++.||+...++.+.++|+.+++.||+++.++||.++++++...+...+.. ...++++++|+|||
T Consensus 57 ----~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~~~---------~~~~~~~~~NikaR 123 (268)
T COG0171 57 ----NVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLKLFLG---------IYLEDLALGNIKAR 123 (268)
T ss_pred ----heeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhhhhcc---------cchhhHHHhhhhHH
Confidence 59999999876588899999999999999999999999999874444332211 12478999999999
Q ss_pred hcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccc
Q 007749 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~ 567 (591)
+||.++|.+|+ +.| .+|+||||+||.++||+|+|||++++++||++|+|++||+| ++.+|+| ++|+
T Consensus 124 ~Rm~~lY~~An-------~~~-~lVlGTgn~sE~~~Gy~TkyGDg~~d~~Pi~~L~KtqV~~L----a~~l~ip--e~I~ 189 (268)
T COG0171 124 LRMVILYAIAN-------KLG-GLVLGTGNKSELALGYFTKYGDGAVDINPIADLYKTQVYAL----ARHLGIP--EEIL 189 (268)
T ss_pred HHHHHHHHHHh-------hcC-CEEEcCCcHHHHhcCceecccCcccChhhhcCCcHHHHHHH----HHHcCCC--HHHh
Confidence 99999998776 447 49999999999999999999999999999999999999999 5566655 9999
Q ss_pred cCCCCCCcccCCCCcccccccc
Q 007749 568 AAPPTAELEPIRSNYSQVHKSI 589 (591)
Q Consensus 568 ~~~psaeL~p~~~~~~q~de~~ 589 (591)
+|||||||+|. ...|+||+-
T Consensus 190 ~k~PTAeL~~~--~~~q~DE~~ 209 (268)
T COG0171 190 KKPPTADLWPD--EPGQTDEAE 209 (268)
T ss_pred cCCCCccccCC--CCCCCCHHH
Confidence 99999999995 246888864
No 13
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=9.9e-43 Score=355.26 Aligned_cols=254 Identities=27% Similarity=0.315 Sum_probs=210.5
Q ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc-ccccchhhHHHHHHHHHHHhcccCCCe
Q 007749 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED-HFLELDTVTHAWECLKDLLLGDWTDGI 81 (591)
Q Consensus 3 ~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d-~~~~~~~~~~~~~~l~~la~~~~~~~i 81 (591)
+||||++|+++..+|+++|++++.+++++|+++|||||||||+++|||.+.+ ++.+........+.++.+.+.++ .+.
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~~~~~~~~~~~~~~~~~~~l~~~a~-~~~ 80 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAAAEAGEETLEFLAALAE-EGG 80 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCcccHHHHHhhhhccCChHHHHHHHHHH-hCC
Confidence 6999999999999999999999999999999999999999999999999985 44444333333334444544443 344
Q ss_pred EEEEcceeeeCCeeeEeEEEE-eCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccce
Q 007749 82 LCSFGMPVIKGSERYNCQVLC-LNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (591)
Q Consensus 82 ~iivG~~~~~~~~lyNsa~vi-~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~ 160 (591)
.+++|.+.......||+++++ .+|+++++|+|+|||++ .|+|+++|.+|+... .
T Consensus 81 ~~ivg~~~~~~~~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~------------------------~ 135 (274)
T COG0388 81 VIIVGGPLPEREKLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGV------------------------V 135 (274)
T ss_pred eEEEEeeeeccccceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccc------------------------e
Confidence 566776655443677777777 59999999999999987 677999999998651 2
Q ss_pred eEEeCCcceeEeeecccCCCChHHHHH-HhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCce
Q 007749 161 FIQFLDTAVAAEICEELFTPIPPHADL-ALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRL 239 (591)
Q Consensus 161 v~~~~~~~iGv~IC~D~~~pe~~~r~l-a~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~ 239 (591)
+|+++++|+|+.||||+|||+ ..+.+ +.+|||+|++|++++...+ ..+|..++++||.+|+++++++|++|.+....
T Consensus 136 v~~~~~~kig~~IC~D~~fPe-~~~~~~a~~Gaeii~~p~a~~~~~~-~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~ 213 (274)
T COG0388 136 VFETDGGKIGLLICYDLRFPE-LARRLLALGGAELLLVPAAWPAERG-LDHWEVLLRARAIENQVYVLAANRAGFDGAGL 213 (274)
T ss_pred eEEeCCceEEEEEEeeccCHH-HHHHHHHhcCCeEEEEcCCCCCccc-HHHHHHHHHHHhhhcCceEEEecccCCCCCcc
Confidence 899999999999999999997 44555 8899999999999998777 45788889999999999999999999883348
Q ss_pred eeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCch
Q 007749 240 YFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (591)
Q Consensus 240 ~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~ 287 (591)
.|+|+|+|+ |+|++++++..+. ++++++++|++.+...|...+.+
T Consensus 214 ~~~G~S~i~~p~G~v~~~~~~~~---e~~~~~~id~~~~~~~r~~~~~~ 259 (274)
T COG0388 214 EFCGHSAIIDPDGEVLAEAGEEE---EGVLLADIDLAELAEVRRKIPVL 259 (274)
T ss_pred EEecceEEECCCccEEeecCCCC---CcEEEEEECHHHHHHHHhhCcch
Confidence 899999999 9999999998762 47999999999999988876544
No 14
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=1.7e-42 Score=367.75 Aligned_cols=256 Identities=16% Similarity=0.115 Sum_probs=209.3
Q ss_pred CceEEEEEecCCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc-ccchh----hHHHHHHH
Q 007749 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF-LELDT----VTHAWECL 69 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~-------~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~-~~~~~----~~~~~~~l 69 (591)
+.||||++|+++.. .+++.|++++.+++++|+++|||||||||++++||...... ....+ .....+.+
T Consensus 85 ~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l 164 (405)
T PLN00202 85 RVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFL 164 (405)
T ss_pred CeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHH
Confidence 46999999999642 69999999999999999999999999999999999641100 00011 11223345
Q ss_pred HHHHhcccCCCeEEEEcceeee---CCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchh
Q 007749 70 KDLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNE 145 (591)
Q Consensus 70 ~~la~~~~~~~i~iivG~~~~~---~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~ 145 (591)
+++| ++++++|++|+.++. ++++|||+++|+ +|+++++|+|+|||++++|.|+.||.+|+...
T Consensus 165 ~~lA---~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~---------- 231 (405)
T PLN00202 165 QELA---RKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGH---------- 231 (405)
T ss_pred HHHH---HHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCc----------
Confidence 5554 468999999987754 357999999997 79999999999999999899999999997521
Q ss_pred hHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcE
Q 007749 146 ISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (591)
Q Consensus 146 ~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~ 225 (591)
.+|+++++|||++||||+|||+ .+|.++++|||+|++|++|+...++ ..|..++++||.+|+++
T Consensus 232 --------------~vf~t~~gkiGv~ICYD~~FPE-~~r~la~~GAdiIl~Psa~~~~~~~-~~w~~~~raRAiEN~~f 295 (405)
T PLN00202 232 --------------PVFETAFGKIAVNICYGRHHPL-NWLAFGLNGAEIVFNPSATVGDLSE-PMWPIEARNAAIANSYF 295 (405)
T ss_pred --------------eEEEeCCCeEEEEEccccccHH-HHHHHHHCCCcEEEECCCCCCccCH-HHHHHHHHHHHHhcCCE
Confidence 3899999999999999999996 7889999999999999999865443 35667889999999999
Q ss_pred EEEEcCCCCCC---------------CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 226 YMYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 226 ~v~aN~~G~~~---------------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
++++|++|.+. +...|.|+|+|+ |+|++++++..+. +++++++||++.+++.|.+.+.+.+
T Consensus 296 vv~aNrvG~~~~~~~~~~~~g~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~---E~llvadIDl~~v~~~R~~~~~~~~ 372 (405)
T PLN00202 296 VGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRYK---DGLLISDMDLNLCRQLKDKWGFRMT 372 (405)
T ss_pred EEEeccccccccccccccccccccccccccccceeEEEcCCCCEeccCCCCC---CcEEEEEeCHHHHHHHHHhCCcccc
Confidence 99999999752 114689999999 9999999987553 3799999999999999988766554
No 15
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=100.00 E-value=1.4e-43 Score=351.60 Aligned_cols=188 Identities=40% Similarity=0.570 Sum_probs=164.3
Q ss_pred HhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcc
Q 007749 332 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411 (591)
Q Consensus 332 ~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (591)
+++++.||++|++++|.++++||||||+|||++|+|+ ++|+ |++
T Consensus 2 ~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La-------~~Al--------------g~~--------------- 45 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALA-------VKAL--------------GPD--------------- 45 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHH-------HHHH--------------GGG---------------
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHH-------HHHh--------------hhc---------------
Confidence 6778999999999999999999999999999999998 5664 433
Q ss_pred eEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHH
Q 007749 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMV 491 (591)
Q Consensus 412 ~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~ 491 (591)
+++|++||+..+++.+.++|+++|+.||++|.+|||+++++++.+.+... ..+++.+|+|+|+||.
T Consensus 46 ~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~~~~~--------------~~~~~~~Ni~aR~Rm~ 111 (242)
T PF02540_consen 46 NVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDPIFDAFLKSLEPA--------------DDDLARGNIQARIRMT 111 (242)
T ss_dssp EEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred cccccccccccCChHHHHHHHHHHHHhCCCeeccchHHHHHHHhhhhccc--------------hhhhhhhhHHHHHHHH
Confidence 69999999999999999999999999999999999999999988877653 1468899999999999
Q ss_pred HHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccCCC
Q 007749 492 LAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPP 571 (591)
Q Consensus 492 ~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~p 571 (591)
++|.+|+.. + .+|+||+|+||..+||+|+|||++++++||++|+|+|||+|++| +| +|++|++|+|
T Consensus 112 ~ly~~a~~~-------~-~lVlgT~N~sE~~~Gy~T~~GD~~~d~~Pi~~L~K~eV~~la~~----l~--ip~~ii~k~P 177 (242)
T PF02540_consen 112 TLYALANKY-------N-YLVLGTGNKSELLLGYFTKYGDGAGDIAPIADLYKTEVRELARY----LG--IPEEIIEKPP 177 (242)
T ss_dssp HHHHHHHHH-------T-EEEBE--CHHHHHHTCSHTTTTTSSSBETTTTS-HHHHHHHHHH----TT--CGHHHHCS--
T ss_pred HHHHHhccc-------c-eEEecCCcHHHhhcCcccccCcccccceeeCCcCHHHHHHHHHH----Hh--hHHHHhcCCC
Confidence 999888755 5 69999999999999999999999999999999999999999555 66 5599999999
Q ss_pred CCCcccCCCCccccccc
Q 007749 572 TAELEPIRSNYSQVHKS 588 (591)
Q Consensus 572 saeL~p~~~~~~q~de~ 588 (591)
||+|+| .|+||+
T Consensus 178 sa~L~~-----gqtDE~ 189 (242)
T PF02540_consen 178 SAGLWP-----GQTDED 189 (242)
T ss_dssp BHHSST-----T-BHHH
T ss_pred CCCCCC-----CCCCHH
Confidence 999998 689885
No 16
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=7.8e-42 Score=350.45 Aligned_cols=252 Identities=22% Similarity=0.250 Sum_probs=210.5
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccc------hhhHHHHHHHHHHHhccc
Q 007749 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL------DTVTHAWECLKDLLLGDW 77 (591)
Q Consensus 4 ~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~------~~~~~~~~~l~~la~~~~ 77 (591)
||||++|+++. +|+++|++++.+++++|+++|+|||||||++++||.+.+..... .......+.+.++++
T Consensus 1 ~~ia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~--- 76 (284)
T cd07573 1 VTVALVQMACS-EDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAK--- 76 (284)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHH---
Confidence 79999999986 99999999999999999999999999999999999887532111 111122234555554
Q ss_pred CCCeEEEEcceeee-CCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCC-CCCcccccccchhhHhhccCcc
Q 007749 78 TDGILCSFGMPVIK-GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWK-QKDQLEDFQLPNEISVALKQKS 154 (591)
Q Consensus 78 ~~~i~iivG~~~~~-~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~-~~~~~~~~~~p~~~~~~~~~~~ 154 (591)
++++++++|++++. ++++||++++|+ +|++++.|+|.|||....+.|.+||.+|+ ..
T Consensus 77 ~~~i~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~-------------------- 136 (284)
T cd07573 77 ELGVVIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGF-------------------- 136 (284)
T ss_pred HCCEEEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCC--------------------
Confidence 68999999998765 468999999998 89999999999999766678999999997 33
Q ss_pred ccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccc-------cchhHHHHHHHHHHHHcCcEEE
Q 007749 155 VPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-------RKLDYRIRAFISATHSRGGVYM 227 (591)
Q Consensus 155 vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~-------gk~~~r~~l~~~~a~e~~~~~v 227 (591)
.+|+++++|+|++||+|.|||+ ++|.++.+|||+|++|+++++.. .....|..+.+.||.+|+++++
T Consensus 137 -----~~~~~~~~~ig~~IC~D~~fpe-~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv 210 (284)
T cd07573 137 -----KVFDTRYGRIGVLICWDQWFPE-AARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVA 210 (284)
T ss_pred -----ceEecCCceEEEEEeccccchH-HHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEE
Confidence 2899999999999999999996 78899999999999999986632 2334567778999999999999
Q ss_pred EEcCCCCCC---CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchh
Q 007749 228 YSNHQGCDG---GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (591)
Q Consensus 228 ~aN~~G~~~---~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~ 288 (591)
++|++|.++ .+..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|...+.+.
T Consensus 211 ~an~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~~~~~~---~~v~~a~id~~~~~~~r~~~~~~~ 272 (284)
T cd07573 211 AVNRVGVEGDPGSGITFYGSSFIADPFGEILAQASRDE---EEILVAEFDLDEIEEVRRAWPFFR 272 (284)
T ss_pred EeccccccCCCCCCceeeceeEEECCCCCeeeccCCCC---CcEEEEEecHHHHHHHHhhChhhh
Confidence 999999873 268999999999 9999999998874 379999999999999987655443
No 17
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=3.9e-42 Score=349.05 Aligned_cols=249 Identities=20% Similarity=0.193 Sum_probs=209.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc---chhhHHHHHHHHHHHhcccCCCe
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE---LDTVTHAWECLKDLLLGDWTDGI 81 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~---~~~~~~~~~~l~~la~~~~~~~i 81 (591)
|||++|+++. +|+++|++++.+++++|+++|+|||||||++++||.+.+.... ........+.+.++++ ++++
T Consensus 1 kia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~i 76 (265)
T cd07572 1 RVALIQMTST-ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAK---EHGI 76 (265)
T ss_pred CEEEEEeeCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHH---HCCe
Confidence 6999999987 9999999999999999999999999999999999997665432 1222234445555555 5899
Q ss_pred EEEEc-ceeeeC--CeeeEeEEEEe-CCEEEEEEecccCCC-----CCCcccccccccCCCCCcccccccchhhHhhccC
Q 007749 82 LCSFG-MPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLAN-----DGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (591)
Q Consensus 82 ~iivG-~~~~~~--~~lyNsa~vi~-~G~il~~y~K~~Lp~-----~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~ 152 (591)
++++| ++++.+ +++||++++|+ +|++++.|+|+||++ ...|.|.+||++|+..
T Consensus 77 ~i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~------------------ 138 (265)
T cd07572 77 WLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEV------------------ 138 (265)
T ss_pred EEEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcc------------------
Confidence 99999 456655 89999999998 899999999999953 2236788999999754
Q ss_pred ccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCC
Q 007749 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (591)
Q Consensus 153 ~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~ 232 (591)
.+|+++++|+|++||+|.|||+ ..|.++.+|||+|++|++++...++. +|..+.+.||.+++++++++|++
T Consensus 139 -------~~~~~~~~~ig~~IC~D~~~pe-~~r~~~~~gadli~~p~~~~~~~~~~-~~~~~~~~rA~e~~~~vv~~n~~ 209 (265)
T cd07572 139 -------VVVDTPFGKIGLGICYDLRFPE-LARALARQGADILTVPAAFTMTTGPA-HWELLLRARAIENQCYVVAAAQA 209 (265)
T ss_pred -------eEEecCCceEEEEEEeccCcHH-HHHHHHHCCCCEEEECCCCCCCcchH-HHHHHHHHHHHhcCCEEEEEccc
Confidence 2899999999999999999996 78899999999999999988766653 46677899999999999999999
Q ss_pred CCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchh
Q 007749 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (591)
Q Consensus 233 G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~ 288 (591)
|.+++...|.|.|+|+ |+|+++++++.+ +++++++||++.+++.|.+.+.++
T Consensus 210 G~~~~~~~~~G~S~i~~p~G~il~~~~~~----~~~~~~~id~~~~~~~r~~~~~~~ 262 (265)
T cd07572 210 GDHEAGRETYGHSMIVDPWGEVLAEAGEG----EGVVVAEIDLDRLEEVRRQIPVLK 262 (265)
T ss_pred ccCCCCCeecceeEEECCCcHHHhhcCCC----CcEEEEEeCHHHHHHHHHhCcchh
Confidence 9886667899999999 999999998866 269999999999998888765543
No 18
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=7.8e-42 Score=353.30 Aligned_cols=252 Identities=19% Similarity=0.222 Sum_probs=202.8
Q ss_pred CceEEEEEecCCCCC--CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccc----hhhHHH--HHHHHHHH
Q 007749 2 RLLKVATCNLNNWAL--DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL----DTVTHA--WECLKDLL 73 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~~--d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~----~~~~~~--~~~l~~la 73 (591)
|+||||++|+++..+ +.+.|++++.+++++|+++|||||||||+++|||.+.+..... .+.+.. .+.++.|+
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF 81 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence 679999999998866 8999999999999999999999999999999999764322111 111110 11344455
Q ss_pred hcccCCCeEEEEcceeee-CC---eeeEeEEEEe-CCEEEEEEecccCCCCCCcc--------cccccccCC-CCCcccc
Q 007749 74 LGDWTDGILCSFGMPVIK-GS---ERYNCQVLCL-NRKIIMIRPKLWLANDGNYR--------ELRWFTAWK-QKDQLED 139 (591)
Q Consensus 74 ~~~~~~~i~iivG~~~~~-~~---~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~--------E~r~F~~G~-~~~~~~~ 139 (591)
+.++++++++++|++++. ++ ++||++++|+ +|+++++|+|+|||++++|. |+.||.+|+ ..
T Consensus 82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~----- 156 (302)
T cd07569 82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGF----- 156 (302)
T ss_pred HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCC-----
Confidence 555568999999998753 44 8999999996 89999999999999987753 667787776 32
Q ss_pred cccchhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccc------c--chhHH
Q 007749 140 FQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL------R--KLDYR 211 (591)
Q Consensus 140 ~~~p~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~------g--k~~~r 211 (591)
.+|+++++|||++||||+|||+ ..|.++.+|||||++|+++++.. . +...|
T Consensus 157 --------------------~v~~~~~~rig~~IC~D~~fpe-~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T cd07569 157 --------------------PVFRVPGGIMGMCICNDRRWPE-TWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHN 215 (302)
T ss_pred --------------------ceEecCCceEEEEEeeccccch-HHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHH
Confidence 2899999999999999999997 68899999999999987653311 1 11234
Q ss_pred HHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhcc
Q 007749 212 IRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (591)
Q Consensus 212 ~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~ 283 (591)
...+++||.||+++++++|++|.+ +...|.|+|+|+ |+|+++++++.+. +++++++||++.++..|..
T Consensus 216 ~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vla~~~~~~---e~~~~a~id~~~~~~~r~~ 284 (302)
T cd07569 216 LLSMQAGAYQNGTWVVAAAKAGME-DGCDLIGGSCIVAPTGEIVAQATTLE---DEVIVADCDLDLCREGRET 284 (302)
T ss_pred HHHHhhhhhcccceEEEeeccccC-CCceEecceEEECCCCCEEEecCCCC---CcEEEEEecHHHhhhcccc
Confidence 445678999999999999999988 567789999999 9999999998874 3699999999999888764
No 19
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.9e-42 Score=345.45 Aligned_cols=246 Identities=24% Similarity=0.285 Sum_probs=208.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-chhhHHHHHHHHHHHhcccCCCeEE
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-LDTVTHAWECLKDLLLGDWTDGILC 83 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~-~~~~~~~~~~l~~la~~~~~~~i~i 83 (591)
|||++|+++..+|+++|++++.+++++|+++|+|||||||++++||.+.+.... ........+.+.++++ ++++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~~~i 77 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAK---KHGVNI 77 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHH---HcCcEE
Confidence 699999999999999999999999999999999999999999999987664322 1122334445555554 589999
Q ss_pred EEcce-eeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCcccccccee
Q 007749 84 SFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGF 161 (591)
Q Consensus 84 ivG~~-~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v 161 (591)
++|++ +..++++|||+++|. +|++++.|+|+||+++ +.|.+||++|+.. .+
T Consensus 78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~~-------------------------~v 130 (253)
T cd07583 78 VAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDEL-------------------------EV 130 (253)
T ss_pred EeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCCc-------------------------eE
Confidence 99975 456789999999998 7999999999999886 4688999999864 28
Q ss_pred EEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceee
Q 007749 162 IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYF 241 (591)
Q Consensus 162 ~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f 241 (591)
|+++++|||++||+|.|||+ ..|.++++|||+|++|++|+.. ....|..+++.||.+|+++++++|++|.+ ++..|
T Consensus 131 ~~~~~~rig~~IC~D~~~pe-~~r~~~~~ga~ll~~ps~~~~~--~~~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~ 206 (253)
T cd07583 131 FELDGGKVGLFICYDLRFPE-LFRKLALEGAEILFVPAEWPAA--RIEHWRTLLRARAIENQAFVVACNRVGTD-GGNEF 206 (253)
T ss_pred EEeCCeEEEEEEEeccccHH-HHHHHHHcCCcEEEECCCCCCC--chHHHHHHHHHHHHHhCCEEEEEcCcccC-CCcee
Confidence 99999999999999999996 7889999999999999998753 23455667889999999999999999998 56788
Q ss_pred eccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchh
Q 007749 242 DGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (591)
Q Consensus 242 ~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~ 288 (591)
.|.|+|+ |+|+++++++. . +++++++||++.++..|...+.++
T Consensus 207 ~G~S~ii~p~G~il~~~~~-~---~~~~~~~i~l~~~~~~r~~~~~~~ 250 (253)
T cd07583 207 GGHSMVIDPWGEVLAEAGE-E---EEILTAEIDLEEVAEVRKKIPVFK 250 (253)
T ss_pred cceeEEECCCchhheecCC-C---ceEEEEEecHHHHHHHHHhCCchh
Confidence 9999999 99999999875 2 379999999999999888765544
No 20
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=4.9e-42 Score=353.94 Aligned_cols=256 Identities=19% Similarity=0.222 Sum_probs=208.8
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcc----cccchhhHHHHHHHHHHHhccc
Q 007749 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDH----FLELDTVTHAWECLKDLLLGDW 77 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~----~~~~~~~~~~~~~l~~la~~~~ 77 (591)
++||||++|+++ .+|+++|++++.+++++|+++|||||||||++++||.+.+. +......+. .+.++.|.+.++
T Consensus 5 ~~~~va~~Q~~~-~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~ 82 (296)
T PLN02747 5 RKVVVAALQFAC-SDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEG-HPTIARMQKLAK 82 (296)
T ss_pred cceEEEEEEecC-CCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCC-ChHHHHHHHHHH
Confidence 579999999997 58999999999999999999999999999999999986521 111111110 123444444444
Q ss_pred CCCeEEEEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCcccc
Q 007749 78 TDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (591)
Q Consensus 78 ~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp 156 (591)
+++++|++|++++.++++||++++|+ +|+++++|+|.|||....+.|..||++|+...
T Consensus 83 ~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~--------------------- 141 (296)
T PLN02747 83 ELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGF--------------------- 141 (296)
T ss_pred HcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCC---------------------
Confidence 68999999998888899999999997 89999999999998765667889999987421
Q ss_pred ccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCccc-----ccchhHHHHHHHHHHHHcCcEEEEEcC
Q 007749 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQ-----LRKLDYRIRAFISATHSRGGVYMYSNH 231 (591)
Q Consensus 157 ~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~-----~gk~~~r~~l~~~~a~e~~~~~v~aN~ 231 (591)
.+|+++++|+|++||+|.|||+ ..|.++.+|||+|++|++++.. ..+...|..+++++|.+|+++++++|+
T Consensus 142 ---~~~~~~~~rig~~IC~D~~fpe-~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~ 217 (296)
T PLN02747 142 ---KVFDTKFAKIGVAICWDQWFPE-AARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNR 217 (296)
T ss_pred ---eeEEcCCccEEEEEEccccchH-HHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEec
Confidence 2899999999999999999996 6889999999999999997432 123346677889999999999999999
Q ss_pred CCCC-------CCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCch
Q 007749 232 QGCD-------GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (591)
Q Consensus 232 ~G~~-------~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~ 287 (591)
+|.+ ..+..|.|+|+|+ |+|+++++++.+. +++++++||++.++..|...+.+
T Consensus 218 ~G~~~~~~~~g~~~~~~~G~S~i~~p~G~vl~~~~~~~---e~~~~adid~~~~~~~r~~~~~~ 278 (296)
T PLN02747 218 IGTEILETEHGPSKITFYGGSFIAGPTGEIVAEADDKA---EAVLVAEFDLDQIKSKRASWGVF 278 (296)
T ss_pred ccccccccccCCcCceEeeeeEEECCCCCEeecCCCCC---CcEEEEEEcHHHHHHHHHhCCch
Confidence 9963 1257899999999 9999999998764 37999999999999888765444
No 21
>PRK00768 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=2.7e-42 Score=342.69 Aligned_cols=204 Identities=27% Similarity=0.353 Sum_probs=166.5
Q ss_pred HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 007749 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (591)
Q Consensus 329 ~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (591)
++....++.||+||++++|++++|||||||+|||++|+|+ ++|++. .+.++.. +
T Consensus 19 ~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~-------~~A~~~-----------~~~~~~~--~------ 72 (268)
T PRK00768 19 EEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLA-------QLAVEE-----------LRAETGD--D------ 72 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHHHH-----------hcccccC--c------
Confidence 4455778899999999999999999999999999999987 344421 1111000 0
Q ss_pred hcceEEEEecCCCCCCHhhHHHHHHHHHHhCC-ceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 409 ~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
...++++.||. +++.+.++|+.+|+.||+ +|.+|||+++++++.+.+.. .+. +.++++.+|+|||
T Consensus 73 -~~~~~~l~mP~--~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~~l~~-~~~----------~~~~~a~~NiqAR 138 (268)
T PRK00768 73 -DYQFIAVRLPY--GVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVAALEA-AGI----------ELSDFVKGNIKAR 138 (268)
T ss_pred -ceeEEEEECCC--CCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHHHHhh-cCC----------CchhhHHHHHHHH
Confidence 00488999996 445689999999999999 89999999999999877653 111 2357899999999
Q ss_pred hcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccc
Q 007749 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~ 567 (591)
+||.++|.+|+.. | .+|+||+|+||.++||+|+|||++++++||++|+|++||+|++| +++| +.|+
T Consensus 139 lRm~~Ly~~An~~-------~-~lvlgT~N~sE~~~Gy~TkyGD~~~d~~pi~~L~KteV~~La~~----l~vP--~~ii 204 (268)
T PRK00768 139 ERMIAQYAIAGAT-------G-GLVVGTDHAAEAVTGFFTKFGDGGADILPLFGLNKRQGRALLAA----LGAP--EHLY 204 (268)
T ss_pred HHHHHHHHHHccC-------C-CEEEcCCcccHHHhCceeccCCccccchhhcCCcHHHHHHHHHH----hCCC--HHHh
Confidence 9999999887754 6 49999999999999999999999999999999999999999655 6655 9999
Q ss_pred cCCCCCCcccCCCCccccccc
Q 007749 568 AAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 568 ~~~psaeL~p~~~~~~q~de~ 588 (591)
+|||||||+|.. ..|+||+
T Consensus 205 ~k~Psa~L~~~~--~gq~DE~ 223 (268)
T PRK00768 205 EKVPTADLEDDR--PGLPDEV 223 (268)
T ss_pred cCCCCCCcCCCC--CCCCChh
Confidence 999999999853 3688875
No 22
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=9.4e-42 Score=346.94 Aligned_cols=244 Identities=24% Similarity=0.202 Sum_probs=204.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhh-----HHHHHHHHHHHhcccCC
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLGDWTD 79 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~-----~~~~~~l~~la~~~~~~ 79 (591)
|||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||.+.+......+. ....+.+.++++ ++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~ 77 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAEEVPDGASTRAWAELAA---EL 77 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhhccCCCCchHHHHHHHHH---Hc
Confidence 6999999999999999999999999999999999999999999999876532111111 112344555554 57
Q ss_pred CeEEEEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccc
Q 007749 80 GILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (591)
Q Consensus 80 ~i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~ 159 (591)
++++++|++++.++++||++++|+++++++.|+|+||++ .|.+||++|+...
T Consensus 78 ~~~i~~G~~~~~~~~~yNs~~vi~~~g~~~~y~K~~l~~----~e~~~f~~G~~~~------------------------ 129 (268)
T cd07580 78 GLYIVAGFAERDGDRLYNSAVLVGPDGVIGTYRKAHLWN----EEKLLFEPGDLGL------------------------ 129 (268)
T ss_pred CcEEEeecccccCCceEEEEEEECCCCcEEEEEEecCCc----hhcceecCCCCCC------------------------
Confidence 999999999888889999999999544789999999975 4889999998621
Q ss_pred eeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccch----hHHHHHHHHHHHHcCcEEEEEcCCCCC
Q 007749 160 GFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKL----DYRIRAFISATHSRGGVYMYSNHQGCD 235 (591)
Q Consensus 160 ~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~----~~r~~l~~~~a~e~~~~~v~aN~~G~~ 235 (591)
.+|+++++|+|++||||+|||+ ..|.++.+|||+|++|++|++..++. ..|..+.++||.+|+++++++|++|.+
T Consensus 130 ~v~~~~~~~ig~~IC~D~~fpe-~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~ 208 (268)
T cd07580 130 PVFDTPFGRIGVAICYDGWFPE-TFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE 208 (268)
T ss_pred ceEEcCCCcEEEEEECcccchH-HHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec
Confidence 2889999999999999999996 67899999999999999998765431 245567788999999999999999988
Q ss_pred CCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhcc
Q 007749 236 GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (591)
Q Consensus 236 ~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~ 283 (591)
++..|.|+|+|+ |+|+++++++.+.+ +++++++||++.++..|..
T Consensus 209 -~~~~~~G~S~ii~p~G~~~~~~~~~~~--~~~~~~~id~~~~~~~r~~ 254 (268)
T cd07580 209 -RGQPFIGQSLIVGPDGWPLAGPASGDE--EEILLADIDLTAARRKRIW 254 (268)
T ss_pred -cCceEeeeeEEECCCCCeeeecCCCCC--CeEEEEEecHHHHHHhhcC
Confidence 557899999999 99999999876533 4799999999999998876
No 23
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=1e-41 Score=351.45 Aligned_cols=254 Identities=19% Similarity=0.158 Sum_probs=208.7
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-----chhhH---HH----HHHHHH
Q 007749 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-----LDTVT---HA----WECLKD 71 (591)
Q Consensus 4 ~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~-----~~~~~---~~----~~~l~~ 71 (591)
||||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||+..+++.. +.+.. .+ ...++.
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELER 80 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHH
Confidence 7999999999889999999999999999999999999999999999987654422 11111 11 124556
Q ss_pred HHhcccCCCeEEEEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhc
Q 007749 72 LLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (591)
Q Consensus 72 la~~~~~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~ 150 (591)
|++.+++++++|++|++++.++++||++++|+ +|++++.|+|+|++ +.|.+||.+|+...
T Consensus 81 l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~----~~E~~~~~~g~~~~--------------- 141 (297)
T cd07564 81 LAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPT----HAERLVWGQGDGSG--------------- 141 (297)
T ss_pred HHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCC----chhhhhcccCCCCC---------------
Confidence 66666678999999998887889999999998 89999999999975 35889999987431
Q ss_pred cCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCC--cccccchhHHHHHHHHHHHHcCcEEEE
Q 007749 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGS--HHQLRKLDYRIRAFISATHSRGGVYMY 228 (591)
Q Consensus 151 ~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas--~~~~gk~~~r~~l~~~~a~e~~~~~v~ 228 (591)
. .+|+++++|||++||||+|||+ ..|.++++|||+|++++.+ +...++ .+|..++++||.+|++++++
T Consensus 142 ----~----~v~~~~~~kig~~ICyD~~fPe-~~r~~a~~ga~ii~~~~~~~~~~~~~~-~~~~~~~~arAien~~~vv~ 211 (297)
T cd07564 142 ----L----RVVDTPIGRLGALICWENYMPL-ARYALYAQGEQIHVAPWPDFSPYYLSR-EAWLAASRHYALEGRCFVLS 211 (297)
T ss_pred ----c----eEEecCCceEEEEEEhhcCCHH-HHHHHHHCCCeEEEECCCCcccccccH-HHHHHHHHHHHHhcCCEEEE
Confidence 0 2899999999999999999996 7889999999999997764 322333 46677889999999999999
Q ss_pred EcCCCCCC--------------CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 229 SNHQGCDG--------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 229 aN~~G~~~--------------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
+|++|.+. +...|.|+|+|+ |+|+++++++.+. +++++++||++.++..|..++.+++
T Consensus 212 ~N~vG~~~~~~~~~~~~~~~~~~~~~~~G~S~iv~P~G~il~~~~~~~---e~~l~a~id~~~~~~~r~~~~~~~~ 284 (297)
T cd07564 212 ACQVVTEEDIPADCEDDEEADPLEVLGGGGSAIVGPDGEVLAGPLPDE---EGILYADIDLDDIVEAKLDFDPVGH 284 (297)
T ss_pred cccccChhHcccccccccccccccccCCCceEEECCCCCeecCCCCCC---ceEEEEEecHHHHHHHHhcCCCCCC
Confidence 99999531 235689999999 9999999987653 4799999999999999987766654
No 24
>PLN02504 nitrilase
Probab=100.00 E-value=1.9e-41 Score=354.71 Aligned_cols=253 Identities=15% Similarity=0.128 Sum_probs=206.6
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc----------cch---hhHHH--
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL----------ELD---TVTHA-- 65 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~----------~~~---~~~~~-- 65 (591)
|+.||||++|+++..+|+++|++++.+++++|+++|||||||||+++|||+....+. ... +...+
T Consensus 22 ~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (346)
T PLN02504 22 SSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAID 101 (346)
T ss_pred CCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhccc
Confidence 457999999999999999999999999999999999999999999999998643222 001 11111
Q ss_pred --HHHHHHHHhcccCCCeEEEEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCccccccc
Q 007749 66 --WECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQL 142 (591)
Q Consensus 66 --~~~l~~la~~~~~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~ 142 (591)
...++.|++.+++++++|++|++++.++++||++++|+ +|++++.|+|+|+.. .|+++|.+|....
T Consensus 102 ~~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~------- 170 (346)
T PLN02504 102 VPGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGST------- 170 (346)
T ss_pred CCCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCC-------
Confidence 12356666666679999999999888889999999998 799999999998742 4889999987431
Q ss_pred chhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHc
Q 007749 143 PNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSR 222 (591)
Q Consensus 143 p~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~ 222 (591)
. .+|+++++|||++||||+|||+ ..|.++++|||||++|++++. ..|..++++||.+|
T Consensus 171 ------------~----~vf~~~~griG~lICyD~~fPe-~~r~la~~Gadii~~p~~~~~-----~~w~~~~rarA~En 228 (346)
T PLN02504 171 ------------I----PVYDTPIGKIGAVICWENRMPL-LRTAMYAKGIEIYCAPTADSR-----ETWQASMRHIALEG 228 (346)
T ss_pred ------------C----ceEEcCCceEEEEEeccchhHH-HHHHHHHCCCeEEEECCCCCc-----hhHHHHHHHHHHcc
Confidence 0 2899999999999999999996 788999999999999998742 35667889999999
Q ss_pred CcEEEEEcCCCC---------------CC----CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhc
Q 007749 223 GGVYMYSNHQGC---------------DG----GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (591)
Q Consensus 223 ~~~~v~aN~~G~---------------~~----~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~ 282 (591)
+++++++|++|. +. +...|.|+|+|+ |+|+++++.... ++++++++||++.+++.|.
T Consensus 229 ~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~---~e~il~adiDl~~i~~~R~ 305 (346)
T PLN02504 229 GCFVLSANQFCRRKDYPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYE---GEGLITADLDLGEIARAKF 305 (346)
T ss_pred CcEEEEecccccccccCcccccccccccccccccccccCcceEEECCCCCEecCCCCC---CCcEEEEEEcHHHHHHHHh
Confidence 999999999962 11 236789999999 999999887533 2479999999999998888
Q ss_pred cCCchhh
Q 007749 283 SISSFQE 289 (591)
Q Consensus 283 ~~~~~~~ 289 (591)
..+.+..
T Consensus 306 ~~~~~~~ 312 (346)
T PLN02504 306 DFDVVGH 312 (346)
T ss_pred hCCcccc
Confidence 7665544
No 25
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.4e-41 Score=343.03 Aligned_cols=247 Identities=21% Similarity=0.161 Sum_probs=207.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc---chhhHHHHHHHHHHHhcccCCCeE
Q 007749 6 VATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE---LDTVTHAWECLKDLLLGDWTDGIL 82 (591)
Q Consensus 6 VAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~---~~~~~~~~~~l~~la~~~~~~~i~ 82 (591)
||++|+++. +|+++|++++.+++++|+++|+|||||||++++||...+.... ........+.+.+++ ++++++
T Consensus 1 ia~~Q~~~~-~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a---~~~~i~ 76 (255)
T cd07581 1 VALAQFASS-GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLA---RELGIT 76 (255)
T ss_pred CEEEEeeCC-CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHH---HHcCeE
Confidence 699999986 9999999999999999999999999999999999987653211 111122333444454 468999
Q ss_pred EEEcceeeeC-CeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccce
Q 007749 83 CSFGMPVIKG-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (591)
Q Consensus 83 iivG~~~~~~-~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~ 160 (591)
+++|++++.+ +++||++++|+ +|++++.|+|.||+++..|.|.+||++|+... + .
T Consensus 77 iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~--------------------~---~ 133 (255)
T cd07581 77 VVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELP--------------------P---V 133 (255)
T ss_pred EEEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCC--------------------c---e
Confidence 9999998865 48999999996 89999999999998766678999999998621 0 2
Q ss_pred eEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCcee
Q 007749 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (591)
Q Consensus 161 v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~ 240 (591)
+++++++|+|++||+|.|||+ ..+.++.+|||+|++|++|+...+..++|..+++.||.+++++++++|++|. .
T Consensus 134 ~~~~~~~kig~~IC~D~~~pe-~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-----~ 207 (255)
T cd07581 134 VFVVGGVKVGLATCYDLRFPE-LARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-----R 207 (255)
T ss_pred EEecCCceEEEEEEecccCHH-HHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC-----C
Confidence 678888999999999999996 7889999999999999998766565667778899999999999999999986 5
Q ss_pred eeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
|.|.|+|+ |+|+++++.+.+ +++++++||++.++..|.+.+.+.+
T Consensus 208 ~~G~S~i~~p~G~i~~~~~~~----~~~l~~~id~~~~~~~r~~~~~~~~ 253 (255)
T cd07581 208 GIGRSMVVDPLGVVLADLGER----EGLLVADIDPERVEEAREALPVLEN 253 (255)
T ss_pred cccceEEECCCcceeeecCCC----CcEEEEEeCHHHHHHHHHhCcchhc
Confidence 88999999 999999998753 3799999999999999988766543
No 26
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.3e-41 Score=340.99 Aligned_cols=246 Identities=24% Similarity=0.238 Sum_probs=207.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-----chhhHHHHHHHHHHHhcccCC
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-----LDTVTHAWECLKDLLLGDWTD 79 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~-----~~~~~~~~~~l~~la~~~~~~ 79 (591)
|||++|+++..+|+++|++++++++++|+++|+|||||||+++|||.+.++... ........+.+.++++ ++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~ 77 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAK---EL 77 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHH---Hc
Confidence 699999999999999999999999999999999999999999999987553211 1111223445556655 58
Q ss_pred CeEEEEcceeeeC--CeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCcccc
Q 007749 80 GILCSFGMPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (591)
Q Consensus 80 ~i~iivG~~~~~~--~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp 156 (591)
++++++|++++.+ +++||++++|+ +|++++.|+|+||+. .|.+||++|+..
T Consensus 78 ~i~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~~---------------------- 131 (258)
T cd07584 78 GVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQY---------------------- 131 (258)
T ss_pred CeEEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCCC----------------------
Confidence 9999999987643 68999999998 899999999999974 388899999764
Q ss_pred ccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCC
Q 007749 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (591)
Q Consensus 157 ~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~ 236 (591)
.+|+++++|+|++||+|+|||+ ..|.++++|||+|++|++|+.. ....|....+.||.||+++++++|++|.+
T Consensus 132 ---~~~~~~~~~~g~~IC~D~~fpe-~~r~~~~~gadll~~ps~~~~~--~~~~~~~~~~~rA~En~~~vv~~n~~g~~- 204 (258)
T cd07584 132 ---PVFDTPFGKIGVMICYDMGFPE-VARILTLKGAEVIFCPSAWREQ--DADIWDINLPARALENTVFVAAVNRVGNE- 204 (258)
T ss_pred ---eeEEcCCceEEEEEEcCccChH-HHHHHHHCCCcEEEECCccCCC--CchHHHHHHHHHHHhCCcEEEEECccccC-
Confidence 2889999999999999999996 7889999999999999998753 23455567889999999999999999988
Q ss_pred CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 237 ~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
++..|.|.|+|+ |+|+++++++.++ +++++++||++.++..|.+.+.+.+
T Consensus 205 ~~~~~~G~S~ii~p~G~il~~~~~~~---~~~~~~~id~~~~~~~r~~~p~~~~ 255 (258)
T cd07584 205 GDLVLFGKSKILNPRGQVLAEASEEA---EEILYAEIDLDAIADYRMTLPYLKD 255 (258)
T ss_pred CCceecceeEEECCCCceeeecCCCC---CcEEEEEeCHHHHHHHHhhCchhhh
Confidence 567899999999 9999999998774 3799999999999999988666543
No 27
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=4.9e-41 Score=344.81 Aligned_cols=246 Identities=17% Similarity=0.127 Sum_probs=198.6
Q ss_pred eEEEEEecCC----CCCCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCcCCCCCCcccccchhhHH-HHHHHHHHHhcc
Q 007749 4 LKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCEDHFLELDTVTH-AWECLKDLLLGD 76 (591)
Q Consensus 4 ~kVAl~Q~~~----~~~d~~~N~~~i~~~i~~A~~--~gadlvvfPEl~ltGy~~~d~~~~~~~~~~-~~~~l~~la~~~ 76 (591)
++||++|+++ ..+|+++|++++.+++++|++ +|+|||||||+++|||...... ..++... ..+.++.|++.+
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~-~~~~a~~~~~~~~~~l~~lA 79 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWT-MDETACTVPGPETDIFAEAC 79 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcch-hhhhccCCCChhHHHHHHHH
Confidence 4799999998 578999999999999999986 5999999999999999853211 0111110 012344455555
Q ss_pred cCCCeEEEEcceeeeC---CeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccC
Q 007749 77 WTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (591)
Q Consensus 77 ~~~~i~iivG~~~~~~---~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~ 152 (591)
+++++++++|++++.+ +++||++++|+ +|+++++|+|+||+. +..+|.+|+...
T Consensus 80 ~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~----------------- 137 (291)
T cd07565 80 KEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGT----------------- 137 (291)
T ss_pred HHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCc-----------------
Confidence 5689999999887653 68999999998 799999999999842 334578887521
Q ss_pred ccccccceeEEeC-CcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcC
Q 007749 153 KSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH 231 (591)
Q Consensus 153 ~~vp~G~~v~~~~-~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~ 231 (591)
.+|++. |+|||++||||+|||| ..|.++++|||+|++|++|+.... .+|..++++||.||+++++++|+
T Consensus 138 -------~v~~~~~g~riG~~ICyD~~fPe-~~r~la~~GAdill~ps~~~~~~~--~~w~~~~~aRA~En~~~vv~aN~ 207 (291)
T cd07565 138 -------PVCEGPKGSKIALIICHDGMYPE-IARECAYKGAELIIRIQGYMYPAK--DQWIITNKANAWCNLMYTASVNL 207 (291)
T ss_pred -------eeeECCCCCEEEEEEEcCCCCcH-HHHHHHHCCCeEEEECCcCCCCcc--hHHHHHHHHHHHhcCcEEEEecc
Confidence 277774 7799999999999996 788999999999999999886433 46777889999999999999999
Q ss_pred CCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCc
Q 007749 232 QGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (591)
Q Consensus 232 ~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~ 286 (591)
+|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.++..|...+.
T Consensus 208 ~G~~-~~~~~~G~S~ivdP~G~ila~~~~~~---e~i~~adid~~~~~~~R~~~~~ 259 (291)
T cd07565 208 AGFD-GVFSYFGESMIVNFDGRTLGEGGREP---DEIVTAELSPSLVRDARKNWGS 259 (291)
T ss_pred cccC-CCceeeeeeEEECCCCCEEEeCCCCC---CcEEEEEEcHHHHHHHHhcCCC
Confidence 9987 567899999999 9999999998763 3699999999999988876543
No 28
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.4e-41 Score=341.49 Aligned_cols=242 Identities=22% Similarity=0.254 Sum_probs=205.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccch--hhHHHHHHHHHHHhcccCCCeE
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD--TVTHAWECLKDLLLGDWTDGIL 82 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~--~~~~~~~~l~~la~~~~~~~i~ 82 (591)
|||++|+++..+|+++|++++.+++++|+++|+|||||||+++|||.+.+....+. ......+.+.++++ +++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~~~ 77 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLAR---RYGLT 77 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHHH---HcCcE
Confidence 69999999988999999999999999999999999999999999999876543311 11223444555554 58999
Q ss_pred EEEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccceeE
Q 007749 83 CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (591)
Q Consensus 83 iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~ 162 (591)
+++|++++.++++||++++|++++.++.|+|.||++. |.+||++|+.. .+|
T Consensus 78 i~~G~~~~~~~~~yNs~~vi~~~g~i~~y~K~~l~~~----E~~~~~~G~~~-------------------------~v~ 128 (261)
T cd07585 78 ILAGLIEKAGDRPYNTYLVCLPDGLVHRYRKLHLFRR----EHPYIAAGDEY-------------------------PVF 128 (261)
T ss_pred EEEeccccCCCceeEEEEEECCCCcEeEEeeecCCcc----ccceEcCCCCC-------------------------ceE
Confidence 9999998778899999999994344789999999863 88899999764 289
Q ss_pred EeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCccccc--chhHHHHHHHHHHHHcCcEEEEEcCCCCCCCcee
Q 007749 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (591)
Q Consensus 163 ~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~g--k~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~ 240 (591)
+++++|+|++||+|+|||+ ..|.++++|||+|++|++++...+ ....|...++.||.+++++++++|++|.+ ++..
T Consensus 129 ~~~~~rig~~IC~D~~~pe-~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~-~~~~ 206 (261)
T cd07585 129 ATPGVRFGILICYDNHFPE-NVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRD-GGEV 206 (261)
T ss_pred EcCCceEEEEEEcCCcCcH-HHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccC-CCce
Confidence 9999999999999999996 688999999999999999875432 23345567889999999999999999988 5788
Q ss_pred eeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhcc
Q 007749 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (591)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~ 283 (591)
|.|.|+|+ |+|+++++++.++ +++++++||++.++..|..
T Consensus 207 ~~G~S~i~~p~G~v~~~~~~~~---e~~l~~~id~~~~~~~r~~ 247 (261)
T cd07585 207 FPGGAMILDPYGRVLAETTSGG---DGMVVADLDLDLINTVRGR 247 (261)
T ss_pred ecceEEEECCCCCEEeccCCCC---CcEEEEEecHHHHHHhhcc
Confidence 99999999 9999999998874 3799999999999988875
No 29
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.3e-41 Score=341.03 Aligned_cols=247 Identities=20% Similarity=0.192 Sum_probs=199.0
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHH-HHHHHHHHhcccCCCeE
Q 007749 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-WECLKDLLLGDWTDGIL 82 (591)
Q Consensus 4 ~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~-~~~l~~la~~~~~~~i~ 82 (591)
+|||++|+++.++|++.|++++.+++++|+++|+|||||||+++|||++.+......+.+.. ...++.|++.++++++.
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 80 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCY 80 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcE
Confidence 58999999999999999999999999999999999999999999999876643222222211 01234444444468999
Q ss_pred EEEcceeee--CCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccce
Q 007749 83 CSFGMPVIK--GSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (591)
Q Consensus 83 iivG~~~~~--~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~ 160 (591)
+++|++++. ++++||++++|+++++++.|+|+|+. +.|.+||++|+... .
T Consensus 81 ii~G~~~~~~~~~~~yNs~~vi~~~g~~~~y~K~h~~----~~e~~~~~~g~~~~------------------------~ 132 (258)
T cd07578 81 IVVGLPEVDSRSGIYYNSAVLIGPSGVIGRHRKTHPY----ISEPKWAADGDLGH------------------------Q 132 (258)
T ss_pred EEEecceecCCCCCeeEEEEEECCCCcEEeEeeecCC----cccccccCCCCCCc------------------------e
Confidence 999999764 46899999999965589999999974 35889999987321 3
Q ss_pred eEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCcee
Q 007749 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (591)
Q Consensus 161 v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~ 240 (591)
+|+++++|+|++||+|+|||+ .+|.++++||++|++|++|+........ ...||.||+++++++|++|.+ ++..
T Consensus 133 v~~~~~~rig~~IC~D~~fpe-~~r~~~~~ga~ll~~ps~~~~~~~~~~~----~~~rA~en~~~vv~an~~G~~-~~~~ 206 (258)
T cd07578 133 VFDTEIGRIALLICMDIHFFE-TARLLALGGADVICHISNWLAERTPAPY----WINRAFENGCYLIESNRWGLE-RGVQ 206 (258)
T ss_pred EEECCCccEEEEEeeCCCchH-HHHHHHHcCCCEEEEcCCCCCCCCcchH----HHHhhhcCCeEEEEecceecc-CCcc
Confidence 899999999999999999996 7889999999999999998653332222 357999999999999999988 5678
Q ss_pred eeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhcc-CCchh
Q 007749 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS-ISSFQ 288 (591)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~-~~~~~ 288 (591)
|.|+|+|+ |+|+++++.+.. +++++++||++.++..|.. .+.++
T Consensus 207 ~~G~S~ii~p~G~il~~~~~~----e~~~~a~id~~~~~~~r~~~~~~~~ 252 (258)
T cd07578 207 FSGGSCIIEPDGTIQASIDSG----DGVALGEIDLDRARHRQFPGELVFT 252 (258)
T ss_pred eeeEEEEECCCCcEeeccCCC----CceEEEEecchHhhhhhcccchhhh
Confidence 99999999 999999987632 3799999999999888764 34433
No 30
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=8.6e-41 Score=341.10 Aligned_cols=236 Identities=18% Similarity=0.137 Sum_probs=190.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
|||++|+++.. |+++|++++.+++++|+++|+|||||||+++|||...+... ........+.|.++++ +++++++
T Consensus 1 ria~~Q~~~~~-d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~~~~-~~~~~~~~~~l~~lA~---~~~i~iv 75 (279)
T cd07579 1 RIAVAQFAPTP-DIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPASEA-ESDTGPAVSALRRLAR---RLRLYLV 75 (279)
T ss_pred CEEEEeccCcc-CHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChHHhc-ccCCCHHHHHHHHHHH---HcCeEEE
Confidence 69999999875 99999999999999999999999999999999997643221 1112233445555555 5899999
Q ss_pred EcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccceeEEe
Q 007749 85 FGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQF 164 (591)
Q Consensus 85 vG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~~~ 164 (591)
+|++++.++++||++++|+++++++.|+|+||++ .|..||++|+.. .+|++
T Consensus 76 ~G~~~~~~~~~yNs~~vi~~~G~i~~Y~K~hL~~----~E~~~f~~G~~~-------------------------~v~~~ 126 (279)
T cd07579 76 AGFAEADGDGLYNSAVLVGPEGLVGTYRKTHLIE----PERSWATPGDTW-------------------------PVYDL 126 (279)
T ss_pred EeceEccCCcEEEEEEEEeCCeeEEEEecccCCC----cchhhccCCCCC-------------------------eeEEc
Confidence 9999888889999999999544789999999975 388999999764 28999
Q ss_pred CCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcc-----------------cccchhHHHHHHHHHHHHcCcEEE
Q 007749 165 LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH-----------------QLRKLDYRIRAFISATHSRGGVYM 227 (591)
Q Consensus 165 ~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~-----------------~~gk~~~r~~l~~~~a~e~~~~~v 227 (591)
+++|||++||||+|||+ .+|.++++|||+|++|++++. ..++..++|.++++||.||+++++
T Consensus 127 ~~~kiG~~ICyD~~fPe-~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv 205 (279)
T cd07579 127 PLGRVGLLIGHDALFPE-AGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFA 205 (279)
T ss_pred CceeEEEEEeccccCcH-HHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEE
Confidence 99999999999999996 789999999999999998753 122212345689999999999999
Q ss_pred EEcCCCCCCCceeeeccEEEE-eCCcEEEecC-CCCCCceeEEEEEEechhhhh
Q 007749 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGS-QFSLKDVEIVVAQVDLDAVAG 279 (591)
Q Consensus 228 ~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~-~f~e~~~~~v~a~iDl~~~~~ 279 (591)
++|++|.. ..|.|+|+|+ |+|.++.... .... ++++++++||++.+++
T Consensus 206 ~aN~~g~~---~~~~G~S~ii~P~G~v~~~~~~~~~~-~e~~l~a~id~~~~~~ 255 (279)
T cd07579 206 FANVPDPA---RGYTGWSGVFGPDTFAFPRQEAAIGD-EEGIAWALIDTSNLDS 255 (279)
T ss_pred EeeccCCc---cccccccEEECCCeEEcchhhcccCC-CCcEEEEEecchhhcc
Confidence 99999865 2378999999 9999984311 0111 3479999999998875
No 31
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=1.2e-40 Score=335.85 Aligned_cols=245 Identities=18% Similarity=0.206 Sum_probs=202.9
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEE
Q 007749 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (591)
Q Consensus 4 ~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~i 83 (591)
||||++|+++.++|++.|++++.+++++|++ |+|||||||+++|||.+.+......+.....+.+.++++ ++++.+
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~---~~~i~i 76 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAK---KKGAAI 76 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHH---HCCeEE
Confidence 7999999999999999999999999999997 999999999999999876543333333334445555555 578988
Q ss_pred EEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccceeE
Q 007749 84 SFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (591)
Q Consensus 84 ivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~ 162 (591)
++|++++.++++||++++++ +|++ ..|+|+||++.+ .|..||++|+.. .+|
T Consensus 77 ~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~~-------------------------~~~ 128 (252)
T cd07575 77 TGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNER-------------------------VIV 128 (252)
T ss_pred EEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCCc-------------------------eEE
Confidence 88888878889999999998 6765 599999998653 588899999754 289
Q ss_pred EeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeee
Q 007749 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFD 242 (591)
Q Consensus 163 ~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~ 242 (591)
+++++|||++||+|+|||+ ..|.++. ||+|++|++|+... ...|..+.++||.+|+++++++|++|.++.+..|.
T Consensus 129 ~~~~~~ig~~IC~D~~~pe-~~r~~~~--a~lil~~s~~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~~ 203 (252)
T cd07575 129 EYKGWKILLQVCYDLRFPV-WSRNTND--YDLLLYVANWPAPR--RAAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYS 203 (252)
T ss_pred EECCEEEEEEEEeccCChH-HHHhhcC--CCEEEEeCCCCCCc--hHHHHHHhHHHHhhccceEEEecccccCCCCceEc
Confidence 9999999999999999997 5656543 99999999987543 23455677889999999999999999885578899
Q ss_pred ccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 243 GCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 243 G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
|.|+|+ |+|+++++++.+ ++++++++|++.++..|...+.+++
T Consensus 204 G~S~i~~p~G~~l~~~~~~----e~~i~~~id~~~~~~~r~~~~~~~~ 247 (252)
T cd07575 204 GDSAVIDPLGEPLAEAEED----EGVLTATLDKEALQEFREKFPFLKD 247 (252)
T ss_pred ceeEEECCCCceeeEcCCC----ceEEEEEECHHHHHHHHhhCCcccc
Confidence 999999 999999998865 3699999999999988887665544
No 32
>PLN02798 nitrilase
Probab=100.00 E-value=1.8e-40 Score=340.45 Aligned_cols=253 Identities=17% Similarity=0.150 Sum_probs=206.6
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCC-CcCCCCCCcccccc-hhhHHHHHHHHHHHhcccCC
Q 007749 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPEL-EITGYGCEDHFLEL-DTVTHAWECLKDLLLGDWTD 79 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl-~ltGy~~~d~~~~~-~~~~~~~~~l~~la~~~~~~ 79 (591)
+.||||++|+++ .+|++.|++++++++++|+++|||||||||+ .++||.+.+.+... .+.....+.|.++++ ++
T Consensus 9 ~~~ria~~Q~~~-~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~---~~ 84 (286)
T PLN02798 9 SSVRVAVAQMTS-TNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLAR---ES 84 (286)
T ss_pred CccEEEEEEccC-CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHH---Hc
Confidence 369999999986 5999999999999999999999999999998 46898865543211 122234455666665 57
Q ss_pred CeEEEEcc-eee--eCCeeeEeEEEEe-CCEEEEEEecccCC-----CCCCcccccccccCCCCCcccccccchhhHhhc
Q 007749 80 GILCSFGM-PVI--KGSERYNCQVLCL-NRKIIMIRPKLWLA-----NDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (591)
Q Consensus 80 ~i~iivG~-~~~--~~~~lyNsa~vi~-~G~il~~y~K~~Lp-----~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~ 150 (591)
++++++|. +++ .++++||++++|+ +|+|+++|+|+||+ ..+.+.|.+||++|+..
T Consensus 85 ~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~---------------- 148 (286)
T PLN02798 85 GLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTI---------------- 148 (286)
T ss_pred CeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCee----------------
Confidence 99999985 444 4578999999998 89999999999994 23345688999999754
Q ss_pred cCccccccceeEEeCCcceeEeeecccCCCChHHHHHH-hCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEE
Q 007749 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLA-LNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYS 229 (591)
Q Consensus 151 ~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la-~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~a 229 (591)
.+|+++++|||++||+|+|||+ ..|.++ ++|||+|++|++++...+. ..|..+++.||.+|+++++.+
T Consensus 149 ---------~v~~~~~~k~g~~IC~D~~fpe-~~r~~a~~~Gadlil~ps~~~~~~~~-~~~~~~~~~rAien~~~vv~a 217 (286)
T PLN02798 149 ---------VAVDSPVGRLGLTVCYDLRFPE-LYQQLRFEHGAQVLLVPSAFTKPTGE-AHWEVLLRARAIETQCYVIAA 217 (286)
T ss_pred ---------eEEecCCceEEEEEEEcccChH-HHHHHHHhCCCcEEEECCcCCCCCcH-HHHHHHHHHHHHHhCCEEEEe
Confidence 2889999999999999999996 778888 9999999999998765544 356677899999999999999
Q ss_pred cCCCCCCCceeeeccEEEE-eCCcEEEecCC-CCCCceeEEEEEEechhhhhhhccCCchh
Q 007749 230 NHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQ-FSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288 (591)
Q Consensus 230 N~~G~~~~~~~f~G~S~I~-p~G~ila~~~~-f~e~~~~~v~a~iDl~~~~~~R~~~~~~~ 288 (591)
|++|..+.+..|.|.|+|+ |+|+++++.+. ++ +++++++||++.++..|.+.+.++
T Consensus 218 n~~G~~~~~~~~~G~S~ii~p~G~il~~~~~~~~---e~~~~a~id~~~~~~~r~~~~~~~ 275 (286)
T PLN02798 218 AQAGKHNEKRESYGHALIIDPWGTVVARLPDRLS---TGIAVADIDLSLLDSVRTKMPIAE 275 (286)
T ss_pred cccCcCCCCceeeeeeEEECCCccchhhcCCCCC---CCEEEEEecHHHHHHHHHhCcchh
Confidence 9999875567889999999 99999999874 32 379999999999998888765543
No 33
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=1.2e-40 Score=341.14 Aligned_cols=237 Identities=16% Similarity=0.038 Sum_probs=193.3
Q ss_pred EEEEEecCCCCCCH-------HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccch-----------------
Q 007749 5 KVATCNLNNWALDF-------DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD----------------- 60 (591)
Q Consensus 5 kVAl~Q~~~~~~d~-------~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~----------------- 60 (591)
|+|+||+.+.+.|. ++|++++.+++++|+++|||||||||+++|||...+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (299)
T cd07567 2 IAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDP 81 (299)
T ss_pred EEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhcccccccccccccccc
Confidence 79999999998888 999999999999999999999999999999998766432110
Q ss_pred hhHHHHHHHHHHHhcccCCCeEEEEcceeee-----------C-CeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccc
Q 007749 61 TVTHAWECLKDLLLGDWTDGILCSFGMPVIK-----------G-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRW 127 (591)
Q Consensus 61 ~~~~~~~~l~~la~~~~~~~i~iivG~~~~~-----------~-~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~ 127 (591)
......+.++.|++.+++++++|++|++++. + +++||++++|+ +|+|+++|+|+||+ .|..|
T Consensus 82 ~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~~ 156 (299)
T cd07567 82 DRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPGF 156 (299)
T ss_pred cccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----ccccc
Confidence 0001123455566655578999999998763 2 26999999999 89999999999995 48889
Q ss_pred cccCCCCCcccccccchhhHhhccCccccccceeEEeCCc-ceeEeeecccCCCChHHHHHHhC-CCcEEEEecCCcccc
Q 007749 128 FTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDT-AVAAEICEELFTPIPPHADLALN-GVEVFMNASGSHHQL 205 (591)
Q Consensus 128 F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~~~~~~-~iGv~IC~D~~~pe~~~r~la~~-Gadlil~psas~~~~ 205 (591)
|.+|.... .+|+++++ |||++||||+|||| ..|.++++ |||+|++|++|+...
T Consensus 157 ~~~G~~~~------------------------~vf~t~~g~kiGvlICyD~~FPE-~~r~la~~~GAdlil~paaw~~~~ 211 (299)
T cd07567 157 DVPPEPEI------------------------VTFDTDFGVTFGIFTCFDILFKE-PALELVKKLGVDDIVFPTAWFSEL 211 (299)
T ss_pred cCCCCCCc------------------------eEEECCCCCEEEEEEEeeccchH-HHHHHHHhCCCCEEEECCccCCCC
Confidence 99986321 28999975 99999999999996 78899999 999999999997543
Q ss_pred cchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eC-CcEEEecCCCCCCceeEEEEEEechhhh
Q 007749 206 RKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VN-GDMIAQGSQFSLKDVEIVVAQVDLDAVA 278 (591)
Q Consensus 206 gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~-G~ila~~~~f~e~~~~~v~a~iDl~~~~ 278 (591)
+. ..|..++++||.+|+++++.||++|.. .|.|+|+|+ |+ |+++++++... ++++++++||++..+
T Consensus 212 ~~-~~w~~l~~arA~eN~~~vi~~N~~g~~----~~~G~S~iv~P~~G~v~a~~~~~~--~e~~l~~~id~~~~~ 279 (299)
T cd07567 212 PF-LTAVQIQQAWAYANGVNLLAANYNNPS----AGMTGSGIYAGRSGALVYHYDNEP--GGKLLVAEVPKLPSR 279 (299)
T ss_pred Cc-hhHHHHHHHHHHHcCceEEEecCCCCc----CccccceEEcCCCCcEEEEecCCC--CceEEEEEccCCccc
Confidence 33 356778899999999999999999864 367999999 99 99999986542 247999999998764
No 34
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.4e-40 Score=333.03 Aligned_cols=237 Identities=22% Similarity=0.214 Sum_probs=193.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHH--HHHHHHHHhcccCCCeE
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA--WECLKDLLLGDWTDGIL 82 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~--~~~l~~la~~~~~~~i~ 82 (591)
|||++|+++..+|++.|++++.+++++|+ ||||||||+++|||...+......+.+.. .+.++.|++.+++++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 77 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELARETGAY 77 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHhCcE
Confidence 69999999999999999999999999884 99999999999999864321101111110 12344555555568999
Q ss_pred EEEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccceeE
Q 007749 83 CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (591)
Q Consensus 83 iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~ 162 (591)
+++|++++.++++||++++|++++++++|+|+||++ .|.+||++|+... .+|
T Consensus 78 ii~G~~~~~~~~~yNs~~vi~~~Gi~~~y~K~~l~~----~e~~~~~~G~~~~------------------------~~~ 129 (259)
T cd07577 78 IVAGLPERDGDKFYNSAVVVGPEGYIGIYRKTHLFY----EEKLFFEPGDTGF------------------------RVF 129 (259)
T ss_pred EEecceeccCCceEEEEEEECCCccEeeEeeccCCh----hhhccccCCCCCC------------------------ceE
Confidence 999999888889999999999434999999999974 4889999998321 289
Q ss_pred EeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCC---Cce
Q 007749 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG---GRL 239 (591)
Q Consensus 163 ~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~---~~~ 239 (591)
+++++|+|++||||.|||+ ..|.++.+|||+|++|++++.. .|..+++.||.||+++++++|++|.+. ++.
T Consensus 130 ~~~~~~ig~~IC~D~~fpe-~~r~~~~~Gadli~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~ 203 (259)
T cd07577 130 DIGDIRIGVMICFDWYFPE-AARTLALKGADIIAHPANLVLP-----YCPKAMPIRALENRVFTITANRIGTEERGGETL 203 (259)
T ss_pred EeCCcEEEEEEEcCcccch-HHHHHHHcCCCEEEECCccCCc-----hhhhhhhHhhhhcCceEEEEecCcccCCCCCCc
Confidence 9999999999999999997 7889999999999999997632 344567899999999999999999762 457
Q ss_pred eeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhh
Q 007749 240 YFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281 (591)
Q Consensus 240 ~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R 281 (591)
.|.|.|+|+ |+|+++++++.++ ++++++++|++.++..|
T Consensus 204 ~~~G~S~i~~p~G~i~~~~~~~~---e~~~~~~id~~~~~~~~ 243 (259)
T cd07577 204 RFIGKSQITSPKGEVLARAPEDG---EEVLVAEIDPRLARDKR 243 (259)
T ss_pred eEeeeeEEECCCCCEEeecCCCC---CcEEEEEEchHHhhccc
Confidence 899999999 9999999998764 36899999999887655
No 35
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.4e-39 Score=333.47 Aligned_cols=253 Identities=18% Similarity=0.115 Sum_probs=194.6
Q ss_pred EEEEEecCCCC----CCHHHHHHHHHHHHHHHHH-----CCCeEEEcCCCCcCCCCCCcccccchhhHHHH----HHHHH
Q 007749 5 KVATCNLNNWA----LDFDCNLKNIKESIGRAKE-----AGAVIRLGPELEITGYGCEDHFLELDTVTHAW----ECLKD 71 (591)
Q Consensus 5 kVAl~Q~~~~~----~d~~~N~~~i~~~i~~A~~-----~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~----~~l~~ 71 (591)
+++++|..+.. +|+++|++++.+++++|++ +|||||||||+++|||.+.+......+.+.+. +.++.
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~ 81 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEA 81 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHH
Confidence 57888987755 8999999999999999987 47999999999999999866432211111111 23444
Q ss_pred HHhcccCCCeEEEEcceeeeC---CeeeEeEEEEe-CCEEEEEEecccCCCCCC-------ccc-ccccccCCCCCcccc
Q 007749 72 LLLGDWTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGN-------YRE-LRWFTAWKQKDQLED 139 (591)
Q Consensus 72 la~~~~~~~i~iivG~~~~~~---~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~-------f~E-~r~F~~G~~~~~~~~ 139 (591)
|++.+++++++|++|..++.+ +++||++++|+ +|++++.|+|+||+.... +.| ..+|.+|...
T Consensus 82 l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~----- 156 (294)
T cd07582 82 LGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDA----- 156 (294)
T ss_pred HHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCcccc-----
Confidence 444444689999999987653 68999999999 899999999999975311 011 0112222000
Q ss_pred cccchhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHH
Q 007749 140 FQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISAT 219 (591)
Q Consensus 140 ~~~p~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a 219 (591)
.| .+|+++++|||++||||+|||+ ..|.++++|||+|++|+++++... ...|..++++||
T Consensus 157 ----------------~~--~v~~~~~~~iG~~ICyD~~fpe-~~r~la~~Gadlil~psa~~~~~~-~~~~~~~~~arA 216 (294)
T cd07582 157 ----------------LF--PVADTEIGNLGCLACEEGLYPE-VARGLAMNGAEVLLRSSSEVPSVE-LDPWEIANRARA 216 (294)
T ss_pred ----------------cc--eeecCCCceEEEEEeecccChH-HHHHHHHCCCcEEEEcCCCCCCcc-hhhHHHHHHHHH
Confidence 01 3788999999999999999996 788999999999999999876543 234566789999
Q ss_pred HHcCcEEEEEcCCCCCCC---ceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccC
Q 007749 220 HSRGGVYMYSNHQGCDGG---RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (591)
Q Consensus 220 ~e~~~~~v~aN~~G~~~~---~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~ 284 (591)
.+|+++++++|++|.++. ...|.|+|+|+ |+|+++++++.+.+ +++++++||++.++..|.+.
T Consensus 217 ~en~~~vv~aN~~G~~~~~~~~~~~~G~S~ivdp~G~vla~~~~~~~--e~il~~~id~~~~~~~R~~~ 283 (294)
T cd07582 217 LENLAYVVSANSGGIYGSPYPADSFGGGSMIVDYKGRVLAEAGYGPG--SMVAGAEIDIEALRRARARP 283 (294)
T ss_pred HhcCCEEEEecccccCcccccCceecceeEEECCCCCEEEeCCCCCC--CeEEEEEEcHHHHHHHHHhc
Confidence 999999999999997643 36899999999 99999999987622 37999999999999888763
No 36
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=5.9e-39 Score=322.94 Aligned_cols=240 Identities=26% Similarity=0.311 Sum_probs=208.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccc----hhhHHHHHHHHHHHhcccCCCe
Q 007749 6 VATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL----DTVTHAWECLKDLLLGDWTDGI 81 (591)
Q Consensus 6 VAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~----~~~~~~~~~l~~la~~~~~~~i 81 (591)
||++|+++..+|+++|++++.+++++|+++|+|||||||++++||.+.+....+ .......+.+.++++ ++++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~i 77 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAK---ELGI 77 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHH---HhCe
Confidence 699999999999999999999999999999999999999999999987654321 222334455666655 5899
Q ss_pred EEEEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccce
Q 007749 82 LCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (591)
Q Consensus 82 ~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~ 160 (591)
.+++|++++.++++||+++++. +|++++.|+|.||++ |.|..||++|+.. .
T Consensus 78 ~ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~~-------------------------~ 129 (253)
T cd07197 78 YIVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDEF-------------------------P 129 (253)
T ss_pred EEEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCCC-------------------------c
Confidence 9999999887889999999998 699999999999987 4688999999764 2
Q ss_pred eEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCcee
Q 007749 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (591)
Q Consensus 161 v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~ 240 (591)
+|+++++|+|++||+|.|+|+ ..+.+..+|+|+|++|+++++.. ..++..+++.+|.+++++++++|.+|.. ++..
T Consensus 130 ~f~~~~~~ig~~IC~d~~~~~-~~~~~~~~g~dli~~ps~~~~~~--~~~~~~~~~~~A~e~~~~vv~~n~~G~~-~~~~ 205 (253)
T cd07197 130 VFDTPGGKIGLLICYDLRFPE-LARELALKGADIILVPAAWPTAR--REHWELLLRARAIENGVYVVAANRVGEE-GGLE 205 (253)
T ss_pred eEEcCCceEEEEEEecCCCcH-HHHHHHHCCCcEEEECCcCCCcc--hHHHHHHHHHHHHHhCCeEEEecCCCCC-CCcc
Confidence 899999999999999999996 68899999999999999988643 4567788999999999999999999988 5788
Q ss_pred eeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccC
Q 007749 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (591)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~ 284 (591)
|.|.|+|+ |+|+++++.+.+ + ++++++||++.+++.|...
T Consensus 206 ~~G~S~i~~p~G~~~~~~~~~-~---~~~~~~id~~~~~~~r~~~ 246 (253)
T cd07197 206 FAGGSMIVDPDGEVLAEASEE-E---GILVAELDLDELREARKRW 246 (253)
T ss_pred ccceeEEECCCCceeeecCCC-C---cEEEEEeCHHHHHHHHhhC
Confidence 99999999 999999999877 2 6899999999998888753
No 37
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.4e-39 Score=330.28 Aligned_cols=246 Identities=17% Similarity=0.088 Sum_probs=196.8
Q ss_pred eEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCC---CCCccc-cc------chhhHHHHHHHHHH
Q 007749 4 LKVATCNLNNWA-LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGY---GCEDHF-LE------LDTVTHAWECLKDL 72 (591)
Q Consensus 4 ~kVAl~Q~~~~~-~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy---~~~d~~-~~------~~~~~~~~~~l~~l 72 (591)
||||++|+++.. +|+++|++++++++++|+++|||||||||++++|| .+.+.. .. ..+.....+.+.++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSEL 80 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999874 89999999999999999999999999999999985 333321 00 11122233444455
Q ss_pred HhcccCCCeEEEEcc-eeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhc
Q 007749 73 LLGDWTDGILCSFGM-PVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (591)
Q Consensus 73 a~~~~~~~i~iivG~-~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~ 150 (591)
+ ++++++|++|. +++.++++||++++++ +|++ +.|+|.||++++ .|..+|.+|+..
T Consensus 81 a---~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~~---------------- 138 (280)
T cd07574 81 A---RKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDKL---------------- 138 (280)
T ss_pred H---HHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCCc----------------
Confidence 4 46899999996 5667889999999998 6766 999999998753 244457888754
Q ss_pred cCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEc
Q 007749 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSN 230 (591)
Q Consensus 151 ~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN 230 (591)
.+|+++++|||++||+|+|||+ +.|.++.+|||+|++|++++...+.. ++...+++||.+|+++++++|
T Consensus 139 ---------~v~~~~~~~ig~~IC~D~~fpe-~~r~l~~~ga~ii~~ps~~~~~~~~~-~~~~~~~arA~en~~~vv~an 207 (280)
T cd07574 139 ---------KVFDTDLGKIGILICYDSEFPE-LARALAEAGADLLLVPSCTDTRAGYW-RVRIGAQARALENQCYVVQSG 207 (280)
T ss_pred ---------eEEecCCccEEEEEecccccHH-HHHHHHHcCCCEEEECCcCCccccHH-HHHHHHHHHHHhhCceEEEeC
Confidence 2899999999999999999996 78899999999999999987554433 334457899999999999999
Q ss_pred CCCCCC---CceeeeccEEEE-eC------CcEEEecCCCCCCceeEEEEEEechhhhhhhccCC
Q 007749 231 HQGCDG---GRLYFDGCSCVV-VN------GDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSIS 285 (591)
Q Consensus 231 ~~G~~~---~~~~f~G~S~I~-p~------G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~ 285 (591)
++|.++ ....|.|+|+|+ |+ |.++++++.++ +++++++||++.++..|...+
T Consensus 208 ~~G~~~~~~~~~~~~G~S~i~~P~~~~~~~g~~l~~~~~~~---e~~~~a~iD~~~~~~~R~~~~ 269 (280)
T cd07574 208 TVGNAPWSPAVDVNYGQAAVYTPCDFGFPEDGILAEGEPNT---EGWLIADLDLEALRRLREEGS 269 (280)
T ss_pred CCCCCCCccccccccccceeecCCCCCCCCCCeEeecCCCC---CceEEEecCHHHHHHHhhcCC
Confidence 999874 146788999999 85 89999987764 369999999999999887643
No 38
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=6.4e-38 Score=326.45 Aligned_cols=248 Identities=19% Similarity=0.168 Sum_probs=198.1
Q ss_pred CceEEEEEecCC----CCCCHHHHHHHHHHHHHHHHHC--CCeEEEcCCCCcCCCCCCcccccchhhHHH-HHHHHHHHh
Q 007749 2 RLLKVATCNLNN----WALDFDCNLKNIKESIGRAKEA--GAVIRLGPELEITGYGCEDHFLELDTVTHA-WECLKDLLL 74 (591)
Q Consensus 2 ~~~kVAl~Q~~~----~~~d~~~N~~~i~~~i~~A~~~--gadlvvfPEl~ltGy~~~d~~~~~~~~~~~-~~~l~~la~ 74 (591)
..||||++|++. ..+|++.|++++.+++++|++. |+|||||||++++||...... ..++.... .+.++.|++
T Consensus 12 ~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~-~~~~a~~~~g~~~~~l~~ 90 (333)
T PRK13287 12 EGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWT-TEEFLCTVDGPEVDAFAQ 90 (333)
T ss_pred CceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccc-hhhhcccCCCHHHHHHHH
Confidence 469999999996 4689999999999999999864 999999999999999865321 11111111 124556666
Q ss_pred cccCCCeEEEEcceeee-CC-eeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhcc
Q 007749 75 GDWTDGILCSFGMPVIK-GS-ERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALK 151 (591)
Q Consensus 75 ~~~~~~i~iivG~~~~~-~~-~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~ 151 (591)
.++++++++++|..++. ++ ++|||+++|+ +|+++++|+|+|+.. +.++|+||+...
T Consensus 91 ~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~---------------- 149 (333)
T PRK13287 91 ACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGI---------------- 149 (333)
T ss_pred HHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCC----------------
Confidence 66678999999887654 33 3999999998 699999999999731 234577876321
Q ss_pred CccccccceeEEeC-CcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEc
Q 007749 152 QKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSN 230 (591)
Q Consensus 152 ~~~vp~G~~v~~~~-~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN 230 (591)
.+|++. |.|||++||+|.|||+ .+|.++++|||+|++|+++++... +.|....+++|.+|+++++++|
T Consensus 150 --------~v~~~~~g~kiG~~ICyD~~fPe-~~R~~a~~GAeill~~s~~~~~~~--~~w~~~~~arA~en~~~vv~an 218 (333)
T PRK13287 150 --------PVCDGPGGSKLAVCICHDGMFPE-MAREAAYKGANVMIRISGYSTQVR--EQWILTNRSNAWQNLMYTASVN 218 (333)
T ss_pred --------ceEECCCCceEEEEEEecccchH-HHHHHHHCCCeEEEECCccCCcch--hHHHHHHHHHHHhCCcEEEEEe
Confidence 277775 6799999999999996 788999999999999999887543 3455667889999999999999
Q ss_pred CCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCc
Q 007749 231 HQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (591)
Q Consensus 231 ~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~ 286 (591)
++|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|.....
T Consensus 219 ~~G~~-~~~~~~G~S~Iidp~G~vl~~~~~~~---~~ii~aeid~~~~~~~R~~~~~ 271 (333)
T PRK13287 219 LAGYD-GVFYYFGEGQVCNFDGTTLVQGHRNP---WEIVTAEVRPDLADEARLGWGL 271 (333)
T ss_pred ccccC-CCeeeeeeeEEECCCCcEEEeCCCCC---CeEEEEEEeHHHHHHHHHhcCc
Confidence 99988 567788999999 9999999998764 3799999999999999986544
No 39
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=5.6e-38 Score=327.28 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=193.3
Q ss_pred ceEEEEEecCC----CCCCHHHHHHHHHHHHHHHH--HCCCeEEEcCCCCcCCCCCCc--ccccchhhHHHHHHHHHHHh
Q 007749 3 LLKVATCNLNN----WALDFDCNLKNIKESIGRAK--EAGAVIRLGPELEITGYGCED--HFLELDTVTHAWECLKDLLL 74 (591)
Q Consensus 3 ~~kVAl~Q~~~----~~~d~~~N~~~i~~~i~~A~--~~gadlvvfPEl~ltGy~~~d--~~~~~~~~~~~~~~l~~la~ 74 (591)
.++||++|++. ...|++.|++++.+++++|+ ..|+|||||||++++||.... +......+.. ..++.|++
T Consensus 12 ~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~i~g--~~~~~l~~ 89 (345)
T PRK13286 12 TVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETASTIPG--EETAIFAE 89 (345)
T ss_pred ceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhcccCCC--HHHHHHHH
Confidence 48999999983 34689999999999999987 458999999999999965322 2111111111 12333444
Q ss_pred cccCCCeEEEEcce-ee----eCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHh
Q 007749 75 GDWTDGILCSFGMP-VI----KGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISV 148 (591)
Q Consensus 75 ~~~~~~i~iivG~~-~~----~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~ 148 (591)
.++++++++++|.. ++ .++++|||+++|+ +|+|+++|+|+|++ .+..+|.||+..
T Consensus 90 ~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~-----~~~e~~~pG~~~-------------- 150 (345)
T PRK13286 90 ACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPW-----CPIEGWYPGDCT-------------- 150 (345)
T ss_pred HHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCC-----chhhceecCCCC--------------
Confidence 44468888887765 33 1356999999998 79999999999974 244567888754
Q ss_pred hccCccccccceeEEeC-CcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEE
Q 007749 149 ALKQKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYM 227 (591)
Q Consensus 149 ~~~~~~vp~G~~v~~~~-~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v 227 (591)
.+|+++ |.|||++||+|.|||| .+|.++++|||+|++|++++.. ..++|..++++||.+|+++++
T Consensus 151 -----------~v~~~~~G~kiG~lIC~D~~fPE-~~R~la~~GAelii~psa~~~~--~~~~~~~~~rarA~eN~~yVv 216 (345)
T PRK13286 151 -----------YVSEGPKGLKISLIICDDGNYPE-IWRDCAMKGAELIVRCQGYMYP--AKEQQVLVAKAMAWANNCYVA 216 (345)
T ss_pred -----------EEEeCCCCcEEEEEEEecccChH-HHHHHHHcCCeEEEEccccCCC--chHHHHHHHHHHHHHCCCEEE
Confidence 277774 5699999999999996 7889999999999999997653 334677789999999999999
Q ss_pred EEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCc
Q 007749 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (591)
Q Consensus 228 ~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~ 286 (591)
++|++|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|.....
T Consensus 217 ~aN~~G~~-~~~~~~G~S~Ivdp~G~vla~~~~~~---e~ii~adld~~~i~~~R~~~~~ 272 (345)
T PRK13286 217 VANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEE---MGIQYAQLSVSQIRDARRNDQS 272 (345)
T ss_pred EEeccccc-CCceeeeeEEEECCCCcEEEecCCCC---CeEEEEEEeHHHHHHHHHhCCc
Confidence 99999987 567899999999 9999999987663 3799999999999999987544
No 40
>PRK00876 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=3e-38 Score=323.47 Aligned_cols=207 Identities=26% Similarity=0.354 Sum_probs=164.9
Q ss_pred HHHHhchhHHHHHHHHH-hCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 007749 329 EEIAFGPGCWLWDYLRR-SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (591)
Q Consensus 329 ~e~~~~~~~~l~d~l~~-~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (591)
++....+..+|++++++ .+.++++++||||+|||++|+|+ .+++ +..
T Consensus 13 ~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa-------~~a~--------------g~~----------- 60 (326)
T PRK00876 13 AAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALC-------VRAL--------------GKE----------- 60 (326)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH-------HHhh--------------CCC-----------
Confidence 45666788899999999 89999999999999999999887 3442 322
Q ss_pred hhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHH---------HhhhhhC--CCC-----Cc---
Q 007749 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLS---------LFQTLTG--KRP-----CY--- 468 (591)
Q Consensus 408 ~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~---------~~~~~~~--~~~-----~~--- 468 (591)
++++++||+..++..+.++|+.+|+.+|++|++++|+++++++.. .+....+ ... .+
T Consensus 61 ----~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~ 136 (326)
T PRK00876 61 ----RVYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDG 136 (326)
T ss_pred ----cEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECchHHHHhhhhhhhHHHHHHHHHHHhccccccccccccccc
Confidence 589999998878889999999999999999999999999887642 1111111 000 00
Q ss_pred --------cc--CCCC----------CCCchhhhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccc
Q 007749 469 --------KV--DGGS----------NVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTK 528 (591)
Q Consensus 469 --------~~--~~~~----------~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~ 528 (591)
.. .+++ ...+++.+|+|||+||+++|.+|+.. | .+|+||+|+||.++||+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~aR~Rm~~ly~~A~~~-------~-~lVlgT~NksE~~~Gy~Tk 208 (326)
T PRK00876 137 DGLNVFSLVVQDPDGEVTRKRLPANAYLQIVAATNFKQRTRKMVEYYHADRL-------N-YAVAGTPNRLEYDQGFFVK 208 (326)
T ss_pred cccccccccccCccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc-------C-CEEEcCCchhhHhhCCeee
Confidence 00 0000 01268899999999999999888755 6 5999999999999999999
Q ss_pred cCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccCCCCCCcccCCCCcccccccc
Q 007749 529 YDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEPIRSNYSQVHKSI 589 (591)
Q Consensus 529 ~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~psaeL~p~~~~~~q~de~~ 589 (591)
|||++++++||+||+|+|||+|++| +|+| +.|++|||||+|||. .|+||+.
T Consensus 209 yGD~~~d~~Pi~~L~Kt~V~~La~~----l~vP--~~Ii~k~PSa~L~~~----~q~de~~ 259 (326)
T PRK00876 209 NGDGAADLKPIAHLYKTQVYALAEH----LGVP--EEIRRRPPTTDTYSL----PQTQEEF 259 (326)
T ss_pred ecCccccchhccCCCHHHHHHHHHH----hCCC--HHHhcCCCCcccCCC----CCChhhh
Confidence 9999999999999999999999555 6655 999999999999974 3788764
No 41
>PTZ00323 NAD+ synthase; Provisional
Probab=100.00 E-value=3.1e-37 Score=312.07 Aligned_cols=207 Identities=22% Similarity=0.290 Sum_probs=171.3
Q ss_pred CCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCC
Q 007749 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (591)
Q Consensus 325 ~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~ 404 (591)
|+| +++......+|++||+++|.++++||||||+|||++|+|+ +++++. .
T Consensus 24 ~~~-~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa-------~~alg~--------------~-------- 73 (294)
T PTZ00323 24 FNP-AAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALC-------ARAMRM--------------P-------- 73 (294)
T ss_pred CCH-HHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHHhcc--------------c--------
Confidence 455 4666778899999999999999999999999999999988 466532 0
Q ss_pred hHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhh
Q 007749 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNI 484 (591)
Q Consensus 405 ~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~ 484 (591)
..+...+++++||+ +|++.+.++|+++|+.+|++|.+|||+++++++.+.+....+.. ..++..+|+
T Consensus 74 --~~~~~~~~~v~~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~~~~~~----------~~~~~~~n~ 140 (294)
T PTZ00323 74 --NSPIQKNVGLCQPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEKAVGIK----------GGAFARGQL 140 (294)
T ss_pred --cCCceEEEEEECCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhhhhccc----------chhhHHHhH
Confidence 01112689999996 58899999999999999999999999999999888877654321 235677899
Q ss_pred hhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhh-hcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccc
Q 007749 485 QARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEG-LRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSL 563 (591)
Q Consensus 485 qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~-~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~ 563 (591)
++|+||..+|.+|++. . ++..+ .+|+||||+||. .+||+|++||++++++|+++|+|++||+|+| .+|+|
T Consensus 141 ~ar~R~~~lY~la~~~-~-~~g~~-~lV~GT~N~sE~~~~Gy~t~~GDg~~d~~pia~L~K~eVr~LAr----~l~lp-- 211 (294)
T PTZ00323 141 RSYMRTPVAFYVAQLL-S-QEGTP-AVVMGTGNFDEDGYLGYFCKAGDGVVDVQLISDLHKSEVFLVAR----ELGVP-- 211 (294)
T ss_pred HHHHHhHHHHHHHHHH-h-hcCCC-eEEECCCCchhhhHhchHhhcCCCCcCchhhcCCcHHHHHHHHH----HcCCC--
Confidence 9999999999998755 1 22334 599999999995 6899999999999999999999999999954 56655
Q ss_pred cccccCCCCCCcccCCCCccccccc
Q 007749 564 AEIEAAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 564 ~~i~~~~psaeL~p~~~~~~q~de~ 588 (591)
+.||+|||||||++ .|+||+
T Consensus 212 ~~i~~kppSA~L~~-----~qtDE~ 231 (294)
T PTZ00323 212 ENTLQAAPSADLWE-----GQTDED 231 (294)
T ss_pred HHHhcCCCCcCcCC-----CCcCHh
Confidence 99999999999997 588875
No 42
>PRK13980 NAD synthetase; Provisional
Probab=100.00 E-value=9.1e-37 Score=308.54 Aligned_cols=191 Identities=35% Similarity=0.478 Sum_probs=166.3
Q ss_pred HHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 007749 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (591)
.+++...++.+|+++++++|.++++||||||+||+++|+++ .+++ +..
T Consensus 10 ~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~~--------------~~~----------- 57 (265)
T PRK13980 10 YEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLA-------VKAL--------------GKE----------- 57 (265)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHHh--------------Ccc-----------
Confidence 36788899999999999999999999999999999999888 3442 222
Q ss_pred hhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 408 ~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
++++++||+..+++.+.++|+.+|+.+|++|++++|+++++++...+.. ..++..+|+++|
T Consensus 58 ----~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~~~---------------~~~~~~~n~~aR 118 (265)
T PRK13980 58 ----NVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIPD---------------ADRLRVGNIMAR 118 (265)
T ss_pred ----ceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHccc---------------ccchHHHHHHHH
Confidence 5899999998888889999999999999999999999988877554321 135678999999
Q ss_pred hcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccc
Q 007749 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~ 567 (591)
+||.++|.+|+.. | .+|+||||+||..+||+|+|||++++++||++|+|++||+|++| +|+| ++|+
T Consensus 119 ~R~~~L~~~A~~~-------g-~lvlgTgn~sE~~~G~~t~~gD~~~~l~Pl~~l~K~eV~~la~~----lgip--~~i~ 184 (265)
T PRK13980 119 TRMVLLYDYANRE-------N-RLVLGTGNKSELLLGYFTKYGDGAVDLNPIGDLYKTQVRELARH----LGVP--EDII 184 (265)
T ss_pred HHHHHHHHHHhhc-------C-CEEEcCCCHhHHHhCCccCCCCcccCcccCCCCcHHHHHHHHHH----HCch--HHHh
Confidence 9999999887644 6 59999999999999999999999999999999999999999554 6655 9999
Q ss_pred cCCCCCCcccCCCCccccccc
Q 007749 568 AAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 568 ~~~psaeL~p~~~~~~q~de~ 588 (591)
+|||||||+| .|+||+
T Consensus 185 ~k~psa~L~~-----~q~De~ 200 (265)
T PRK13980 185 EKPPSADLWE-----GQTDEG 200 (265)
T ss_pred CCCCCcCCCC-----CCCCHH
Confidence 9999999998 588876
No 43
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=1.4e-36 Score=308.92 Aligned_cols=223 Identities=18% Similarity=0.128 Sum_probs=185.4
Q ss_pred eEEEEEecCCCCC------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhccc
Q 007749 4 LKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW 77 (591)
Q Consensus 4 ~kVAl~Q~~~~~~------d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~ 77 (591)
+|||++|+++..+ |+++|++++.+++++|+++|+|||||||++++||... ....+++|++.++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~~-----------~~~~~~~l~~~ak 69 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQR-----------DPDALARLARAAR 69 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccccc-----------CHHHHHHHHHHHH
Confidence 5899999998876 8899999999999999999999999999999999721 1223455555555
Q ss_pred CCCeEEEEcceeeeC--CeeeEeEEEEe-CCEEEEEEecccCCCCCCc---------------ccccccccCCCCCcccc
Q 007749 78 TDGILCSFGMPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLANDGNY---------------RELRWFTAWKQKDQLED 139 (591)
Q Consensus 78 ~~~i~iivG~~~~~~--~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f---------------~E~r~F~~G~~~~~~~~ 139 (591)
++++++++|++++.+ +++||++++|+ +|+++++|+|+||++++++ .|.++|.+|+..
T Consensus 70 ~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~----- 144 (270)
T cd07571 70 AVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGP----- 144 (270)
T ss_pred hcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCC-----
Confidence 689999999987765 48999999998 6889999999999987654 467888888754
Q ss_pred cccchhhHhhccCccccccceeEEeCC-cceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcc-ccc-chhHHHHHHH
Q 007749 140 FQLPNEISVALKQKSVPFGYGFIQFLD-TAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH-QLR-KLDYRIRAFI 216 (591)
Q Consensus 140 ~~~p~~~~~~~~~~~vp~G~~v~~~~~-~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~-~~g-k~~~r~~l~~ 216 (591)
.+|++++ +|+|++||+|+|||+ ..|.++.+|||+|++|+++.+ ... ...+++.+.+
T Consensus 145 --------------------~vf~~~~~~r~g~~IC~D~~fpe-~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~ 203 (270)
T cd07571 145 --------------------QPLLLGGGVRVGPLICYESIFPE-LVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMAR 203 (270)
T ss_pred --------------------CccccCCCceEEEEEEeeeeChH-HHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHH
Confidence 2789999 999999999999996 788999999999999998543 211 2345567789
Q ss_pred HHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechh
Q 007749 217 SATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDA 276 (591)
Q Consensus 217 ~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~ 276 (591)
.||.+|+++++++|+. |.|+|+ |+|+++++++.++ +++++++||++.
T Consensus 204 arA~en~~~vv~~n~~----------G~S~ivdp~G~ii~~~~~~~---e~~~~~~i~~~~ 251 (270)
T cd07571 204 LRAIETGRPLVRAANT----------GISAVIDPDGRIVARLPLFE---AGVLVAEVPLRT 251 (270)
T ss_pred HHHHHhCCCEEEEcCC----------eeeEEECCCCcEEeecCCCc---ceEEEEEeccCC
Confidence 9999999999999975 458899 9999999998764 379999999864
No 44
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=100.00 E-value=4.1e-36 Score=301.30 Aligned_cols=196 Identities=47% Similarity=0.685 Sum_probs=169.8
Q ss_pred HHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 007749 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (591)
.++++.+++.||++|++++|.++++|+||||+||+++|+++ ++++ +..
T Consensus 3 ~~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la-------~~~~--------------~~~----------- 50 (248)
T cd00553 3 LEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALA-------VRAL--------------GRE----------- 50 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHH-------HHHh--------------Ccc-----------
Confidence 36889999999999999999999999999999999999988 3442 211
Q ss_pred hhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 408 ~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
++++++||+..++..+.++|+.+|+.+|++|++++++++++.+...+....+. ...+.+.+|+|+|
T Consensus 51 ----~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~~~----------~~~~~~~~n~~ar 116 (248)
T cd00553 51 ----NVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPAVEAFLALLGESGGS----------ELEDLALGNIQAR 116 (248)
T ss_pred ----cEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHHHHHHHHHHhhhccc----------chhhHHHHhhHHH
Confidence 59999999988888999999999999999999999999988877666532111 2357889999999
Q ss_pred hcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccc
Q 007749 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~ 567 (591)
+||.++|.+|+.+ | .+|+||||++|..+||+|+|||++++++||++++|++||+|++| +|+| +.|+
T Consensus 117 ~R~~~Ly~~A~~~-------~-~~vlgTgn~~E~~~G~~t~~gd~~~~i~Pl~~l~K~eV~~la~~----~~ip--~~i~ 182 (248)
T cd00553 117 LRMVILYALANKL-------G-GLVLGTGNKSELLLGYFTKYGDGAADINPIGDLYKTQVRELARY----LGVP--ESII 182 (248)
T ss_pred HHHHHHHHHHHhc-------C-CEEEcCCcHhHHHhCCeeccCCcccCccccCCCcHHHHHHHHHH----HCch--HHHh
Confidence 9999999877644 6 59999999999999999999999999999999999999999555 5654 9999
Q ss_pred cCCCCCCcccCCCCccccccc
Q 007749 568 AAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 568 ~~~psaeL~p~~~~~~q~de~ 588 (591)
++||||+|+| .|+||+
T Consensus 183 ~k~psa~l~~-----~q~de~ 198 (248)
T cd00553 183 DKPPSAELWP-----GQTDED 198 (248)
T ss_pred cCCCCcccCC-----CCCCHH
Confidence 9999999998 588875
No 45
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=3.2e-35 Score=301.43 Aligned_cols=230 Identities=17% Similarity=0.172 Sum_probs=163.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHH----CCCeEEEcCCCCcCCCCCCcccccchhhHHH--HHHHHHHHhcccC
Q 007749 5 KVATCNLNNWALDFDCNLKNIKESIGRAKE----AGAVIRLGPELEITGYGCEDHFLELDTVTHA--WECLKDLLLGDWT 78 (591)
Q Consensus 5 kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~----~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~--~~~l~~la~~~~~ 78 (591)
|||++|+++..+|+++|++++.+++++|++ +|+|||||||+++|||...+......+.+.. ...++.+++.+++
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~ 80 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKK 80 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 699999999889999999999999999988 8999999999999999875432211121111 1223444444446
Q ss_pred CCeEEEEcceeeeC---CeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCcc
Q 007749 79 DGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKS 154 (591)
Q Consensus 79 ~~i~iivG~~~~~~---~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~ 154 (591)
++++|++|++++.+ +++|||+++|+ +|+++++|+|+||++. |..||.++.... ...+.. .+ ++..
T Consensus 81 ~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~----~~~~~~~e~~~~-~~~~~~-----~~-~G~~ 149 (295)
T cd07566 81 FNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYT----DEEWGCEENPGG-FQTFPL-----PF-AKDD 149 (295)
T ss_pred cCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCC----CcccccCCCCCc-cccccc-----cc-cccc
Confidence 89999999988754 48999999998 8999999999999864 334444433210 000000 00 0110
Q ss_pred ccccceeEEeCCcceeEeeecccC---C--C---ChHHHHHHhCCCcEEEEecCCcccccchh-------HH---HHHHH
Q 007749 155 VPFGYGFIQFLDTAVAAEICEELF---T--P---IPPHADLALNGVEVFMNASGSHHQLRKLD-------YR---IRAFI 216 (591)
Q Consensus 155 vp~G~~v~~~~~~~iGv~IC~D~~---~--p---e~~~r~la~~Gadlil~psas~~~~gk~~-------~r---~~l~~ 216 (591)
.+. .++.+.++|||++||||+| | | .+.+|.++++|||||++|++|+...+... .| ....+
T Consensus 150 ~~~--~~~~~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (295)
T cd07566 150 DFD--GGSVDVTLKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWL 227 (295)
T ss_pred ccc--ccccCCcceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHH
Confidence 000 0233458899999999996 7 5 13788999999999999999986443210 11 23345
Q ss_pred HHHH------HcCcEEEEEcCCCCCCCceeeeccEEEE
Q 007749 217 SATH------SRGGVYMYSNHQGCDGGRLYFDGCSCVV 248 (591)
Q Consensus 217 ~~a~------e~~~~~v~aN~~G~~~~~~~f~G~S~I~ 248 (591)
+|+. +|+++++++|++|.+ ++..|.|+|+|+
T Consensus 228 ~ra~~~~a~~eN~~~vv~~Nr~G~~-~~~~f~G~S~i~ 264 (295)
T cd07566 228 QRFEPLRAEPLEGTQVVFCNRIGTE-NDTLYAGSSAVI 264 (295)
T ss_pred HhhcccccCCCCceEEEEEeccCcc-CCceecCcccee
Confidence 5554 999999999999998 678899999987
No 46
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-36 Score=280.99 Aligned_cols=256 Identities=16% Similarity=0.131 Sum_probs=201.9
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHH-HHHHHHHHHhcccCCCeE
Q 007749 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTH-AWECLKDLLLGDWTDGIL 82 (591)
Q Consensus 4 ~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~-~~~~l~~la~~~~~~~i~ 82 (591)
-+||++|+.. ..|...|++...++|++|+++||++|.|||.|- |...+....-++.+. .-+.+++..+.+++++|+
T Consensus 16 ~~vAv~Qm~S-~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d--Fi~~n~~esi~Lae~l~~k~m~~y~elar~~nIw 92 (295)
T KOG0807|consen 16 KRVAVAQMTS-SNDLTKNLATCKELISEAAQKGAKLIFLPEAFD--FIGQNPLESIELAEPLDGKFMEQYRELARSHNIW 92 (295)
T ss_pred ceeEEEeecc-chHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh--hhcCCcccceecccccChHHHHHHHHHHHhcCee
Confidence 6899999975 699999999999999999999999999999872 222221111111111 223344444444579999
Q ss_pred EEEccee-ee---CCeeeEeEEEEe-CCEEEEEEecccCCC-----CCCcccccccccCCCCCcccccccchhhHhhccC
Q 007749 83 CSFGMPV-IK---GSERYNCQVLCL-NRKIIMIRPKLWLAN-----DGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (591)
Q Consensus 83 iivG~~~-~~---~~~lyNsa~vi~-~G~il~~y~K~~Lp~-----~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~ 152 (591)
+-+|... +. ..++||+-++|+ +|+|+..|+|.||++ ..-+.|...-.||....
T Consensus 93 lSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~----------------- 155 (295)
T KOG0807|consen 93 LSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIE----------------- 155 (295)
T ss_pred EEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccC-----------------
Confidence 9998644 32 268999999998 999999999999953 23344555555554431
Q ss_pred ccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCC
Q 007749 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (591)
Q Consensus 153 ~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~ 232 (591)
..++++-+|+|..||||++||| .+..+..+||+|+..|||.....|+. +|.-++++||.|++||||.+.++
T Consensus 156 -------~pv~tP~GklGlaICYDiRFpE-~sl~LR~~gA~iLtyPSAFT~~TG~A-HWEiLlRARAietQCYVvaaaQ~ 226 (295)
T KOG0807|consen 156 -------SPVDTPLGKLGLAICYDIRFPE-LSLKLRKMGAQILTYPSAFTIKTGEA-HWEILLRARAIETQCYVVAAAQV 226 (295)
T ss_pred -------CccCCcccccceeeeeeccCch-HHHHHHHcCCcEEeccchhhhcccHH-HHHHHHHHHHhhcceEEEehhhc
Confidence 2567888999999999999996 77799999999999999988878875 78889999999999999999999
Q ss_pred CCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhh
Q 007749 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQ 290 (591)
Q Consensus 233 G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~ 290 (591)
|.....-...|+|||+ |+|.++++.+.-+ ..++++|+||++.++..|..++.|...
T Consensus 227 G~HneKR~SyGhSMiVDPWGtVva~~se~~--~~~l~~AdiDlslld~lr~~mP~~~hR 283 (295)
T KOG0807|consen 227 GKHNEKRESYGHSMIVDPWGTVVARCSERT--GPGLILADIDLSLLDSLRTKMPLFNHR 283 (295)
T ss_pred ccccchhhccCcceEEcchhhhheecCCCC--CCceEEEEccHHHHHHHHHhCchhhhc
Confidence 9884445567999999 9999999997643 368999999999999999999988654
No 47
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=264.79 Aligned_cols=255 Identities=18% Similarity=0.157 Sum_probs=208.9
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-chhh------HHHHHHHHHHHh
Q 007749 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-LDTV------THAWECLKDLLL 74 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~-~~~~------~~~~~~l~~la~ 74 (591)
..+++|++|......+...|++.....+++|+++|++||||||.+++||...+.+.. .+.. ..+...++.+++
T Consensus 12 ~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~va~ 91 (298)
T KOG0806|consen 12 PNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEVAE 91 (298)
T ss_pred cccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHHHh
Confidence 468999999999888999999999999999999999999999999999998432221 1111 234455677766
Q ss_pred cccCCCeEEEEcceeee--CCeeeEeEEEEe-CCEEEEEEecccCCCCC-----CcccccccccCCCCCcccccccchhh
Q 007749 75 GDWTDGILCSFGMPVIK--GSERYNCQVLCL-NRKIIMIRPKLWLANDG-----NYRELRWFTAWKQKDQLEDFQLPNEI 146 (591)
Q Consensus 75 ~~~~~~i~iivG~~~~~--~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~-----~f~E~r~F~~G~~~~~~~~~~~p~~~ 146 (591)
+++++++.|+++.. ++++||++.+++ +|+.++.|+|.||++.. -|.|...|++|....
T Consensus 92 ---~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~----------- 157 (298)
T KOG0806|consen 92 ---RLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFT----------- 157 (298)
T ss_pred ---hceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCCC-----------
Confidence 58999999987654 479999999998 99999999999998642 167888899888752
Q ss_pred HhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCc---ccccchhHHHHHHHHHHHHcC
Q 007749 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSH---HQLRKLDYRIRAFISATHSRG 223 (591)
Q Consensus 147 ~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~---~~~gk~~~r~~l~~~~a~e~~ 223 (591)
++++..+|||+.||+|+|||+ +++.++++||++|+.|++|. -..+. .+|..+.++|+..|.
T Consensus 158 --------------~~~~~~gkfGi~IC~Di~F~d-~A~~~~~~g~~~ivyPtaw~~~~l~~~~-~hw~~~~~~~a~~n~ 221 (298)
T KOG0806|consen 158 --------------VVDTSYGKFGIFICFDIRFYD-PAMILVKDGADLIVYPTAWNNELLSAVP-LHWALLMRARANDNA 221 (298)
T ss_pred --------------cccCCCCceEEEEEecccccc-hHHHHHHcCCcEEEecchHhhhcccccc-hHHHHHHhCCcccce
Confidence 566777999999999999996 78899999999999999987 32332 356667888999999
Q ss_pred cEEEEEcCCCCCCCceeeec-cEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhh
Q 007749 224 GVYMYSNHQGCDGGRLYFDG-CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQ 290 (591)
Q Consensus 224 ~~~v~aN~~G~~~~~~~f~G-~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~ 290 (591)
.+++.+|..+..+..+...| +|.+. |.|++|+....- .+++++++|++.+.+.|+..+.+++.
T Consensus 222 ~~v~~~s~~~~~s~~y~~~gshs~~~~p~gkvl~a~~~~----~e~~~a~~d~~~~~~~rq~~~~~~~r 286 (298)
T KOG0806|consen 222 ANVHAPSPARTGSGIYAPRGSHSIMVNPTGKVLAAAVEK----EEIIYADVDPSAIASRRQGLPVFRQR 286 (298)
T ss_pred eeeeccCcCcCCceeeecCCcceeecCCcceEeeeccCC----CccccccCCHHHHHHHhcccchhhcc
Confidence 99999999876656677777 99999 999999887542 34899999999999999888877654
No 48
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.97 E-value=4e-30 Score=258.19 Aligned_cols=192 Identities=31% Similarity=0.434 Sum_probs=153.4
Q ss_pred HHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhc
Q 007749 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (591)
Q Consensus 331 ~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (591)
....+..+|++++++.+.++++||||||+||+++|+++ .+++ +.+
T Consensus 5 ~~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~-------~~~~--------------~~~-------------- 49 (250)
T TIGR00552 5 YVEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALC-------VEAL--------------GEQ-------------- 49 (250)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHH-------HHhh--------------CCc--------------
Confidence 34456678999999999999999999999999998887 3332 211
Q ss_pred ceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcH
Q 007749 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRM 490 (591)
Q Consensus 411 ~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~ 490 (591)
.+...++++..++..+.+.|+++|+.+|++|+++++++++..+...... ..+ +....+.+|+++|+|+
T Consensus 50 -~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~---~~~--------~~~~~~~~n~car~R~ 117 (250)
T TIGR00552 50 -NHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASFQAQTET---GDE--------LSDFLAKGNLKARLRM 117 (250)
T ss_pred -eEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHHHHHHHHHhcc---ccC--------CchHHHHHHHHHHHHH
Confidence 3444455555567889999999999999999999999888754332211 111 1223567899999999
Q ss_pred HHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccCC
Q 007749 491 VLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAP 570 (591)
Q Consensus 491 ~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~ 570 (591)
.++|.+|+.+ | .++++|||.+|..+||+|++||..+++.||++++|++|+++ ++.+|+| +.|++||
T Consensus 118 ~~L~~~A~~~-------g-~~~laTgh~~E~~~G~~t~~gd~~~~i~PL~~l~K~eV~~l----A~~~g~p--~~i~~k~ 183 (250)
T TIGR00552 118 AALYAIANKH-------N-LLVLGTGNKSELMLGYFTKYGDGGCDIAPIGDLFKTQVYEL----AKRLNVP--ERIIEKP 183 (250)
T ss_pred HHHHHHHHhc-------C-CEEEcCCcHHHHhhCCeecccCCccCccccCCCcHHHHHHH----HHHHCcc--HHHhCCC
Confidence 9999777644 6 49999999999999999999999999999999999999999 5556765 8899999
Q ss_pred CCCCcccCCCCccccccc
Q 007749 571 PTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 571 psaeL~p~~~~~~q~de~ 588 (591)
|||||+| .|+||+
T Consensus 184 psa~L~~-----~q~de~ 196 (250)
T TIGR00552 184 PTADLFD-----GQTDET 196 (250)
T ss_pred CCcCCCC-----CCcCHH
Confidence 9999998 488864
No 49
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.97 E-value=4.2e-30 Score=246.67 Aligned_cols=176 Identities=28% Similarity=0.335 Sum_probs=139.1
Q ss_pred EEEEEecCC--CCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCC----CcccccchhhHHH--HHHHHHHHhcc
Q 007749 5 KVATCNLNN--WALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC----EDHFLELDTVTHA--WECLKDLLLGD 76 (591)
Q Consensus 5 kVAl~Q~~~--~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~----~d~~~~~~~~~~~--~~~l~~la~~~ 76 (591)
|||++|+++ ...|.++|++++.+++++|+++|+|||||||++++||.. .+........... ...+..|.+.+
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 80 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELA 80 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHH
Confidence 899999997 889999999999999999999999999999999999943 2211111111100 23445555555
Q ss_pred cCCCeEEEEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcc-cccccccCCCCCcccccccchhhHhhccCcc
Q 007749 77 WTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYR-ELRWFTAWKQKDQLEDFQLPNEISVALKQKS 154 (591)
Q Consensus 77 ~~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~-E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~ 154 (591)
+++++++++|++++.++++||++++|+ +|++++.|+|+||+++++|. |.+||.+|.....
T Consensus 81 ~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~------------------ 142 (186)
T PF00795_consen 81 KENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFP------------------ 142 (186)
T ss_dssp HHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESE------------------
T ss_pred HhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceee------------------
Confidence 568999999999999999999999999 79999999999999999998 9999999843210
Q ss_pred ccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecC
Q 007749 155 VPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASG 200 (591)
Q Consensus 155 vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psa 200 (591)
.|...+++++|+|||++||||.|||+ ..+.++.+|||+|++||+
T Consensus 143 -~~~~~~~~~~g~~ig~~ICyd~~fp~-~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 143 -VFETPVFDFGGGRIGVLICYDLRFPE-LVRELAKQGADILINPSA 186 (186)
T ss_dssp -EEEETETEETTEEEEEEEGGGGGSHH-HHHHHHHTTESEEEEEE-
T ss_pred -eeecceeeeccceEEEEEEcccCChH-HHHHHHHCCCCEEEeCCC
Confidence 01112456678999999999999996 778999999999999986
No 50
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.96 E-value=2.4e-28 Score=269.71 Aligned_cols=224 Identities=21% Similarity=0.138 Sum_probs=173.7
Q ss_pred ceEEEEEecCCCC------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcc
Q 007749 3 LLKVATCNLNNWA------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD 76 (591)
Q Consensus 3 ~~kVAl~Q~~~~~------~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~ 76 (591)
.+|||++|+|+.. ++.++|++++.++++++ ++|+|+|||||.++++|. .+. .+...+.+.++++
T Consensus 219 ~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~~------~~~~~~~l~~~a~-- 288 (505)
T PRK00302 219 ALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-EDL------PQAFLKALDDLAR-- 288 (505)
T ss_pred CcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-ccc------cHHHHHHHHHHHH--
Confidence 5899999999876 56789999999999844 579999999999998763 111 1112234555554
Q ss_pred cCCCeEEEEcceeeeC---C-eeeEeEEEEeCCEEEEEEecccCCCCCCcccc---------------cccccCCCCCcc
Q 007749 77 WTDGILCSFGMPVIKG---S-ERYNCQVLCLNRKIIMIRPKLWLANDGNYREL---------------RWFTAWKQKDQL 137 (591)
Q Consensus 77 ~~~~i~iivG~~~~~~---~-~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~---------------r~F~~G~~~~~~ 137 (591)
++++.+++|.+++.+ + ++||+++++++|+++++|+|+||.+++||-.. .+|++|+...
T Consensus 289 -~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~~~-- 365 (505)
T PRK00302 289 -EKGSALITGAPRAENKQGRYDYYNSIYVLGPYGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYVQ-- 365 (505)
T ss_pred -hCCCEEEEecccccCCCCCCceeeEEEEECCCCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCCCC--
Confidence 589999999986543 3 69999999998999999999999998875321 1345554210
Q ss_pred cccccchhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcc-cccc-hhHHHHHH
Q 007749 138 EDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH-QLRK-LDYRIRAF 215 (591)
Q Consensus 138 ~~~~~p~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~-~~gk-~~~r~~l~ 215 (591)
.++++++.|+|+.||||.+||+ ..|.++.+|||+|++|++..| .... ..++..+.
T Consensus 366 ----------------------~v~~~~~~~ig~~ICyE~~fpe-~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~ 422 (505)
T PRK00302 366 ----------------------PPLLAKGLKLAPLICYEIIFPE-EVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMA 422 (505)
T ss_pred ----------------------CCcccCCceEEEEEeehhcChH-HHHhhccCCCCEEEEccchhhcCCCCchHHHHHHH
Confidence 2778899999999999999996 778999999999999998543 2222 23567788
Q ss_pred HHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEech
Q 007749 216 ISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLD 275 (591)
Q Consensus 216 ~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~ 275 (591)
+.||.||+++++.+|+. |.|.|+ |+|+++++.+.++ ++++++++|+.
T Consensus 423 ~~RAiEng~~vvra~n~----------G~Saiidp~G~i~~~~~~~~---~~~l~~~i~~~ 470 (505)
T PRK00302 423 RMRALELGRPLIRATNT----------GITAVIDPLGRIIAQLPQFT---EGVLDGTVPPT 470 (505)
T ss_pred HHHHHHhCCceEEecCc----------eeeEEECCCCCEeeecCCCc---eeEEEEEeccC
Confidence 99999999999999875 457888 9999999998774 37888998873
No 51
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.96 E-value=1.4e-28 Score=263.26 Aligned_cols=204 Identities=19% Similarity=0.123 Sum_probs=161.5
Q ss_pred ceEEEEEecCCCCC------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcc
Q 007749 3 LLKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD 76 (591)
Q Consensus 3 ~~kVAl~Q~~~~~~------d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~ 76 (591)
.+|||++|.|+... +.++|++++.+++++|++ |+|||||||+++++|...+. +...+.+.++++
T Consensus 159 ~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~~-------~~~~~~l~~~a~-- 228 (391)
T TIGR00546 159 TLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENSP-------QKLADRLKLLVL-- 228 (391)
T ss_pred cceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhCc-------HHHHHHHHHHHH--
Confidence 58999999998664 468899999999998876 99999999999999854221 112334455554
Q ss_pred cCCCeEEEEcceeeeCC---eeeEeEEEEe-CCEEEEEEecccCCCCCCccc----------------ccccccCCCCCc
Q 007749 77 WTDGILCSFGMPVIKGS---ERYNCQVLCL-NRKIIMIRPKLWLANDGNYRE----------------LRWFTAWKQKDQ 136 (591)
Q Consensus 77 ~~~~i~iivG~~~~~~~---~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E----------------~r~F~~G~~~~~ 136 (591)
++++.+++|.+...++ ++||++++++ +|+++++|+|+||.+++||-. .++|++|++.
T Consensus 229 -~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~~~-- 305 (391)
T TIGR00546 229 -SKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPGP-- 305 (391)
T ss_pred -hCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCCCC--
Confidence 5899999999865443 7999999998 799999999999999887533 1345555432
Q ss_pred ccccccchhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCccccc--chhHHHHH
Q 007749 137 LEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRA 214 (591)
Q Consensus 137 ~~~~~~p~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~g--k~~~r~~l 214 (591)
.+++++++|+|+.||||.+||+ ..|.++++|||+|++||+++|-.. ...++..+
T Consensus 306 -----------------------~~~~~~~~~~g~~ICyE~~fp~-~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~ 361 (391)
T TIGR00546 306 -----------------------QVLKLPGGKIAPLICYESIFPD-LVRASARQGAELLVNLTNDAWFGDSSGPWQHFAL 361 (391)
T ss_pred -----------------------CCCcCCCceeeeeEEeehhchH-HHHhhccCCCCEEEEecchhhcCCCCChHHHHHH
Confidence 2678889999999999999996 778999999999999999765222 13466788
Q ss_pred HHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eCCcE
Q 007749 215 FISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDM 253 (591)
Q Consensus 215 ~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~G~i 253 (591)
.+.||.||+++++.+|+.| .|.|+ |+|++
T Consensus 362 ~~~RAiEn~~~vvra~n~G----------~S~vidp~G~i 391 (391)
T TIGR00546 362 ARFRAIENGRPLVRATNTG----------ISAVIDPRGRT 391 (391)
T ss_pred HHHHHHHhCCcEEEecCCc----------eeEEECCCCCC
Confidence 8999999999999999875 46777 99975
No 52
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.95 E-value=6.8e-27 Score=220.43 Aligned_cols=247 Identities=17% Similarity=0.161 Sum_probs=201.0
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc----------chhhH---HHH-
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----------LDTVT---HAW- 66 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~----------~~~~~---~~~- 66 (591)
|.+.||+++|......|....++++++++.+|+++||+||+|||.++.||+-+..|.- .+|.. .+.
T Consensus 15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIe 94 (337)
T KOG0805|consen 15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIE 94 (337)
T ss_pred ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhc
Confidence 4678999999999999999999999999999999999999999999999997654421 12222 121
Q ss_pred ---HHHHHHHhcccCCCeEEEEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCccccccc
Q 007749 67 ---ECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQL 142 (591)
Q Consensus 67 ---~~l~~la~~~~~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~ 142 (591)
..+++|+..++++++++++|..++++-.+|-++++++ +|..++++||. +|+-. |+-.+-.|+..
T Consensus 95 v~gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKl-mPTal---ERciWGqGDGS-------- 162 (337)
T KOG0805|consen 95 VPGPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKL-MPTAL---ERCIWGQGDGS-------- 162 (337)
T ss_pred CCChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCcccccccccc-ccchh---hheeeccCCCc--------
Confidence 2467777777789999999999999999999999998 89999999998 66643 66666666543
Q ss_pred chhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHc
Q 007749 143 PNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSR 222 (591)
Q Consensus 143 p~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~ 222 (591)
++| ||+++-+|||-.|||+.+.|. .+..|..+|.+|.+.|++.. ...|..-++..|.|-
T Consensus 163 -----------TiP----V~dT~iGKIG~AICWEN~MPl-~R~alY~KgieIycAPT~D~-----r~~w~~sM~~IAlEG 221 (337)
T KOG0805|consen 163 -----------TIP----VYDTPIGKIGAAICWENRMPL-YRTALYAKGIEIYCAPTADG-----RKEWQSSMLHIALEG 221 (337)
T ss_pred -----------ccc----eeecccchhceeeecccccHH-HHHHHHhcCcEEEeccCCCC-----cHHHHHhhhheeecC
Confidence 333 899999999999999999994 66788899999999999853 235677788999999
Q ss_pred CcEEEEEcCCCCC-------------------CCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhc
Q 007749 223 GGVYMYSNHQGCD-------------------GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (591)
Q Consensus 223 ~~~~v~aN~~G~~-------------------~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~ 282 (591)
+|+++.+++.=.. .++.+..|+|.|+ |-|++++. |.|. .++++++++|++.+.++|.
T Consensus 222 ~cFvlSA~QF~k~~d~p~~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~Vlag-P~~~--~EgL~tadldl~dIA~ak~ 298 (337)
T KOG0805|consen 222 GCFVLSACQFCKRKDFPDHPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAG-PNFE--SEGLITADLDLGDIARAKL 298 (337)
T ss_pred ceEEEEhhhhcccccCCCCchhhcccchhccCCCcceecCCcEEEccccceecC-CCcC--ccceEEEeccchhhhhhcc
Confidence 9999999985211 1456778999999 99999984 5665 3589999999999987665
Q ss_pred c
Q 007749 283 S 283 (591)
Q Consensus 283 ~ 283 (591)
.
T Consensus 299 d 299 (337)
T KOG0805|consen 299 D 299 (337)
T ss_pred c
Confidence 4
No 53
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.92 E-value=3.7e-24 Score=203.21 Aligned_cols=250 Identities=16% Similarity=0.148 Sum_probs=189.5
Q ss_pred CceEEEEEecCCC---CCC----HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCC--Ccccccchhh-----HHHHH
Q 007749 2 RLLKVATCNLNNW---ALD----FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC--EDHFLELDTV-----THAWE 67 (591)
Q Consensus 2 ~~~kVAl~Q~~~~---~~d----~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~--~d~~~~~~~~-----~~~~~ 67 (591)
|.+||+++|-.+. ... ..+-.+++...|+.|+..|+.+|+|.|.+...|.. .+.+..-+|. ....+
T Consensus 72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~ 151 (387)
T KOG0808|consen 72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK 151 (387)
T ss_pred cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence 4589999997652 222 34556778888888999999999999998776541 1211112222 23456
Q ss_pred HHHHHHhcccCCCeEEEEcceee---eCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccc
Q 007749 68 CLKDLLLGDWTDGILCSFGMPVI---KGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (591)
Q Consensus 68 ~l~~la~~~~~~~i~iivG~~~~---~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p 143 (591)
.+++||+ +++|.|+-...++ +++.++|++++|. +|.++++.||.|+|--|.|.|..|+..|+-.
T Consensus 152 flqklak---khdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lg--------- 219 (387)
T KOG0808|consen 152 FLQKLAK---KHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLG--------- 219 (387)
T ss_pred HHHHHHh---hCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCC---------
Confidence 7888887 4898877655554 3678999999998 8999999999999999999999999888753
Q ss_pred hhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcC
Q 007749 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (591)
Q Consensus 144 ~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~ 223 (591)
.+||++..+|||+-|||-..+|. -+..+++.||+||+|||+.--.+... .|---.+..|..|.
T Consensus 220 ---------------hpvfet~fgriavnicygrhhpl-nwlmy~lngaeiifnpsatvgalsep-lwpiearnaaianh 282 (387)
T KOG0808|consen 220 ---------------HPVFETVFGRIAVNICYGRHHPL-NWLMYGLNGAEIIFNPSATVGALSEP-LWPIEARNAAIANH 282 (387)
T ss_pred ---------------CceeeeecceEEEEeeccCCCch-hhhhhhccCceEEECCccccccccCc-cCchhhhhhhhhhc
Confidence 25999999999999999999996 45689999999999999863222211 12122566788899
Q ss_pred cEEEEEcCCCCC--------C-------CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhcc
Q 007749 224 GVYMYSNHQGCD--------G-------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (591)
Q Consensus 224 ~~~v~aN~~G~~--------~-------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~ 283 (591)
++.+..|++|.+ + +-..|.|+|.+. |++..--...+.. ++++++++||..+++.+..
T Consensus 283 ~ft~~inrvgtevfpneftsgdgkpah~dfghfygssy~aapd~srtp~lsr~r---dgllia~ldlnlcrq~kd~ 355 (387)
T KOG0808|consen 283 YFTGSINRVGTEVFPNEFTSGDGKPAHNDFGHFYGSSYFAAPDASRTPSLSRYR---DGLLIADLDLNLCRQYKDK 355 (387)
T ss_pred eEEEeecccccccCCCcccCCCCCcccccccccccceeeecCCCCCCccccccc---cceEEeecchHHHHHhhhh
Confidence 999999999965 1 124689999999 9998765555553 4899999999999876644
No 54
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.92 E-value=6.1e-24 Score=227.61 Aligned_cols=188 Identities=12% Similarity=0.008 Sum_probs=145.8
Q ss_pred eEEEEEecCCCCCC------HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhccc
Q 007749 4 LKVATCNLNNWALD------FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW 77 (591)
Q Consensus 4 ~kVAl~Q~~~~~~d------~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~ 77 (591)
.+|+++|.|..+.. .+.|++++.+++++|.++|+|+|||||.+++.|...+ ...++++++.+
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~~-----------~~~~~~l~~~~- 262 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNNS-----------PILLDKLKELS- 262 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhhC-----------HHHHHHHHHhc-
Confidence 48999999975332 3689999999999998889999999999987653221 12344555542
Q ss_pred CCCeEEEEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcc----------------cccccccCCCCCcccccc
Q 007749 78 TDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYR----------------ELRWFTAWKQKDQLEDFQ 141 (591)
Q Consensus 78 ~~~i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~----------------E~r~F~~G~~~~~~~~~~ 141 (591)
.++.+++|.+..+++++|||++++++|+ ++.|+|+||.++|||- |..+|++|+..
T Consensus 263 -~~~~ii~G~~~~~~~~~yNS~~vi~~G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~------- 333 (418)
T PRK12291 263 -HKITIITGALRVEDGHIYNSTYIFSKGN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKF------- 333 (418)
T ss_pred -cCCcEEEeeeeccCCceEEEEEEECCCC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCC-------
Confidence 4788999998776678999999998887 7899999999998742 33455555433
Q ss_pred cchhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccc--hhHHHHHHHHHH
Q 007749 142 LPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRK--LDYRIRAFISAT 219 (591)
Q Consensus 142 ~p~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk--~~~r~~l~~~~a 219 (591)
.++++++.|+|+.||||.+||+ ..| +|||+|+++|++.|--.. ..++..+++.||
T Consensus 334 ------------------~~~~~~g~~ig~lICYE~~Fpe-l~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RA 390 (418)
T PRK12291 334 ------------------SDFTLDGVKFRNAICYEATSEE-LYE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYA 390 (418)
T ss_pred ------------------cceeeCCeEEEEEEeeeecchH-hhc----cCCCEEEEecccccCCCChhHHHHHHHHHHHH
Confidence 2678899999999999999996 333 899999999987662221 235567788899
Q ss_pred HHcCcEEEEEcCCCCC
Q 007749 220 HSRGGVYMYSNHQGCD 235 (591)
Q Consensus 220 ~e~~~~~v~aN~~G~~ 235 (591)
.|++.+++.+.+.|.+
T Consensus 391 iE~g~pvvratNtGiS 406 (418)
T PRK12291 391 RKYGKTIYHSANGSPS 406 (418)
T ss_pred HHhCCcEEEEcCCcee
Confidence 9999999999888865
No 55
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=3.2e-19 Score=194.82 Aligned_cols=227 Identities=19% Similarity=0.118 Sum_probs=150.1
Q ss_pred ceEEEEEecCCC---CCCHHHHHHHHHHHH---HHHH--HCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHh
Q 007749 3 LLKVATCNLNNW---ALDFDCNLKNIKESI---GRAK--EAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLL 74 (591)
Q Consensus 3 ~~kVAl~Q~~~~---~~d~~~N~~~i~~~i---~~A~--~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~ 74 (591)
.++|+++|.|+. ..|.++=...+...+ ..+. .+++|+||+||.+++ +...+. .+.+.++.+
T Consensus 227 ~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p-~~~~~~----------~~~~~~~~~ 295 (518)
T COG0815 227 TLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALP-FDLTRH----------PDALARLAE 295 (518)
T ss_pred ceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccc-cchhhc----------chHHHHHHH
Confidence 589999999975 234333222222222 2222 378999999999987 222221 111333333
Q ss_pred cccCCCeEEEEcceee--eCCe--eeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhh
Q 007749 75 GDWTDGILCSFGMPVI--KGSE--RYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVA 149 (591)
Q Consensus 75 ~~~~~~i~iivG~~~~--~~~~--lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~ 149 (591)
...+.+..+++|.... .+++ +|||+++++ +|+++.+|+|.||.|+|||-.-..+-+.-... +.+| ..++
T Consensus 296 ~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~----~~~~--~~~f 369 (518)
T COG0815 296 ALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFF----LNLP--MSDF 369 (518)
T ss_pred HHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhh----hccc--cccc
Confidence 3335678899994332 2444 899999999 55999999999999999875533222111100 0000 0011
Q ss_pred ccCccccccceeEEeC-CcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccc---hhHHHHHHHHHHHHcCcE
Q 007749 150 LKQKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRK---LDYRIRAFISATHSRGGV 225 (591)
Q Consensus 150 ~~~~~vp~G~~v~~~~-~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk---~~~r~~l~~~~a~e~~~~ 225 (591)
..|.. ..++.+. +.|+++.||||.-||+ ..|....+|||+|+|+|+..| +++ ..++..+.+.||.|++.+
T Consensus 370 ~~G~~----~~v~~~~~~~~~~~~ICYE~~F~~-~~r~~~~qga~~Lin~SNDAW-f~~s~~p~QH~~~a~~RAiE~grp 443 (518)
T COG0815 370 SRGPG----PQVLLLAGGPKIAPLICYEAIFPE-LVRASARQGAELLLNLSNDAW-FGGSWGPYQHFQQARVRAVELGRP 443 (518)
T ss_pred cCCCC----CcceecCCCceeeceeeehhhchH-HHHHhhcCCCcEEEEcccccc-cCCCcchHHHHHHHHHHHHhcCCc
Confidence 11111 1245554 4679999999999996 678999999999999998665 222 235667789999999999
Q ss_pred EEEEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCC
Q 007749 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSL 262 (591)
Q Consensus 226 ~v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e 262 (591)
++.+.+.|.+ .|+ |.|+++++.+.|+.
T Consensus 444 ~iRAtNtGiS----------avIdp~Gri~~~l~~~~~ 471 (518)
T COG0815 444 LVRATNTGIS----------AVIDPRGRILAQLPYFTR 471 (518)
T ss_pred EEEEcCCcce----------EEECCCCCEEeecCCCCc
Confidence 9999888865 566 99999999998864
No 56
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.81 E-value=4.8e-19 Score=187.28 Aligned_cols=172 Identities=12% Similarity=0.024 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEEcceeeeCCeeeEeEE
Q 007749 21 NLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQV 100 (591)
Q Consensus 21 N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iivG~~~~~~~~lyNsa~ 100 (591)
+..++.+.+++|.++|+|+|||||+++++|..... . .+.+.+ +++++.+++|..+++++++||+++
T Consensus 207 ~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~~----~-------~~~~~l---~~~~i~II~G~~~~~~~~~yNsa~ 272 (388)
T PRK13825 207 RRRELIATVRAAAAAGARVVVLPESALGFWTPTTE----R-------LWRESL---RGSDVTVIAGAAVVDPGGYDNVLV 272 (388)
T ss_pred HHHHHHHHHHhhcccCCCEEEccCccccccccccc----H-------HHHHHH---HhCCCeEEEEeeecCCCCceEEEE
Confidence 33455667788888899999999999999864211 1 112222 357899999998877888999999
Q ss_pred EEeCCEEEEEEecccCCCCCCcc-------cccccccCCCCCcccccccchhhHhhccCccccccceeEEeCCcceeEee
Q 007749 101 LCLNRKIIMIRPKLWLANDGNYR-------ELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEI 173 (591)
Q Consensus 101 vi~~G~il~~y~K~~Lp~~~~f~-------E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~v~~~~~~~iGv~I 173 (591)
++++++....|+|+||.++++|. |..+|.+|.. ++.+|++++.|+|++|
T Consensus 273 v~~~~G~~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~------------------------~~~vf~l~g~rvg~lI 328 (388)
T PRK13825 273 AISAGGGRILYRERMPVPVSMWQPWRPWTGQGGGARAHFF------------------------ANPVVEIDGRRAAPLI 328 (388)
T ss_pred EEeCCCCeeeEeeeeCcCccccCchHHhhccccCCCCCCC------------------------CCCceeeCCeEEEEEE
Confidence 99953335599999998777643 3334443321 1237889999999999
Q ss_pred ecccCCCChHHHHHHhCCCcEEEEecCCcccccch--hHHHHHHHHHHHHcCcEEEEEcC
Q 007749 174 CEELFTPIPPHADLALNGVEVFMNASGSHHQLRKL--DYRIRAFISATHSRGGVYMYSNH 231 (591)
Q Consensus 174 C~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~--~~r~~l~~~~a~e~~~~~v~aN~ 231 (591)
|||.+||.+ .+....+|+|+|++|++..|..+.. .+.+.+.+.+|+|++.+++.+.+
T Consensus 329 CYE~~F~~p-el~~~~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 329 CYEQLLVWP-VLQSMLHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred eeeecCcHH-HHHhhccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 999998532 2233479999999999876644432 34567889999999999987643
No 57
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.74 E-value=7.9e-18 Score=174.87 Aligned_cols=167 Identities=22% Similarity=0.240 Sum_probs=101.4
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCC-----
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS----- 423 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~s----- 423 (591)
++|+||||||||||++|+|+ .+ .|. .|+++||-....
T Consensus 1 ~kV~vamSGGVDSsvaA~LL-------k~---------------~G~----------------~V~Gv~m~~~~~~~~~~ 42 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALL-------KE---------------QGY----------------DVIGVTMRNWDEEDESG 42 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHH-------HH---------------CT-----------------EEEEEEEE-SS-SSSHH
T ss_pred CeEEEEccCCHHHHHHHHHH-------Hh---------------hcc----------------cceEEEEEEeccccccC
Confidence 47999999999999999887 22 354 499999986544
Q ss_pred ----CHhhHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhhh--hhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHH
Q 007749 424 ----SQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFML 496 (591)
Q Consensus 424 ----s~~t~~~A~~la~~lG~~~~~i~i~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~ 496 (591)
++.+.++|+++|+.|||+|+++|+.+.|.. +++.|.+ ..|.+| .+++.+|-+-++.. |+..
T Consensus 43 ~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TP----------NPcv~CN~~IKF~~--l~~~ 110 (356)
T PF03054_consen 43 KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTP----------NPCVLCNRFIKFGA--LLEY 110 (356)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT--------------HHHHHHHHTTTTH--HHHH
T ss_pred CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCC----------ChHHhhchhhhHHH--HHHH
Confidence 245789999999999999999999987753 3333333 247777 45778898755554 4443
Q ss_pred HccCcccccCCCCeEEEcCCchhhhhcc-----ccccc-----CCCC------------CCCcCCCCCcHHHHHHHHHHH
Q 007749 497 ASLLPWVHNKPGFYLVLGSSNVDEGLRG-----YLTKY-----DCSS------------ADINPIGSISKQDLRTFLRWA 554 (591)
Q Consensus 497 a~~~~~~~~~~g~~lvl~t~n~sE~~~G-----~~t~~-----gd~~------------~~~~Pl~~l~K~~v~~l~~~~ 554 (591)
|.. ..| .-.++|||+...... |.-.- -|++ ..++||++++|+|||++
T Consensus 111 a~~------~~g-~d~iATGHYAri~~~~~~~~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~i---- 179 (356)
T PF03054_consen 111 ADE------GLG-ADYIATGHYARIEKDEKNGRYRLLRGADPKKDQSYFLSRLPQEQLSRLIFPLGELTKEEVREI---- 179 (356)
T ss_dssp HHT------TTT--SEEE---SEEEEEES-TTEEEEEE-SSTTC--GGGGTT--HHHHCCEE-TCCCS-HHHHHHH----
T ss_pred HHh------hcC-CCeeccceeEEEEeeccCCceEEEecCCCCCCceEEEEecCHHHHHhhcCCCCCCCHHHHHHH----
Confidence 432 146 478999997643222 11111 1333 36889999999999999
Q ss_pred HHhcCCccccccccCCCCCCcccCCC
Q 007749 555 ATHLGYSSLAEIEAAPPTAELEPIRS 580 (591)
Q Consensus 555 ~~~~~~~i~~~i~~~~psaeL~p~~~ 580 (591)
|+++|++ +.+|+.|.++|.+++
T Consensus 180 A~~~gl~----~a~k~eSq~iCFi~~ 201 (356)
T PF03054_consen 180 AREAGLP----VAEKKESQGICFIGD 201 (356)
T ss_dssp HHHCT-T----TTT-----SSTTTCC
T ss_pred HHhcCCc----ccCccccceEEEecC
Confidence 8889999 999999999999863
No 58
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.72 E-value=3.2e-17 Score=157.87 Aligned_cols=164 Identities=23% Similarity=0.283 Sum_probs=120.7
Q ss_pred HHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 007749 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (591)
Q Consensus 338 ~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 417 (591)
-|+.|++.. .+++|++|||+|||++|.++ .+++ | + ++.|||
T Consensus 9 ~l~~~ik~~--~kv~vAfSGGvDSslLa~la-------~~~l--------------G-~---------------~v~AvT 49 (269)
T COG1606 9 RLKKAIKEK--KKVVVAFSGGVDSSLLAKLA-------KEAL--------------G-D---------------NVVAVT 49 (269)
T ss_pred HHHHHHhhc--CeEEEEecCCccHHHHHHHH-------HHHh--------------c-c---------------ceEEEE
Confidence 467788876 49999999999999999887 4664 4 2 589999
Q ss_pred cCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHH
Q 007749 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLA 497 (591)
Q Consensus 418 m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a 497 (591)
..|+..+..+++.|+..|+.+|++|..|++..+-- .|. .|.-.||..|.-..+.
T Consensus 50 v~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~~----~~~----------------------~n~~~rCY~CK~~v~~ 103 (269)
T COG1606 50 VDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMDP----EFK----------------------ENPENRCYLCKRAVYS 103 (269)
T ss_pred EecCCCChhhhhHHHHHHHHhCCcceeeehhhcch----hhc----------------------cCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999965421 111 1222222222222222
Q ss_pred ccCcccccCCCCeEEEcCCchhhh---hcccccccCCCCCCCcCC--CCCcHHHHHHHHHHHHHhcCCccccccccCCCC
Q 007749 498 SLLPWVHNKPGFYLVLGSSNVDEG---LRGYLTKYDCSSADINPI--GSISKQDLRTFLRWAATHLGYSSLAEIEAAPPT 572 (591)
Q Consensus 498 ~~~~~~~~~~g~~lvl~t~n~sE~---~~G~~t~~gd~~~~~~Pl--~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~ps 572 (591)
.+. ..+.+.|...|+...|.|++ ..|+...+-. ++-+|+ .+++|.+|+++ ++.+|++ +|+||+.
T Consensus 104 ~l~-~~a~~~Gyd~V~dGtNasDl~~~RPG~rA~kE~--gi~sPl~e~gitk~eIre~----a~~lgl~----~~~kp~~ 172 (269)
T COG1606 104 TLV-EEAEKRGYDVVADGTNASDLFDYRPGLRALKEL--GIRSPLAEFGITKKEIREI----AKSLGLP----TWDKPSM 172 (269)
T ss_pred HHH-HHHHHcCCCEEEeCCcHHHhcCCCcchhhHHhc--CCCChHHHhCCcHHHHHHH----HHHcCCC----cccCccc
Confidence 222 34445566689988899876 3444444333 677999 58999999999 8889999 9999999
Q ss_pred CCccc
Q 007749 573 AELEP 577 (591)
Q Consensus 573 aeL~p 577 (591)
|||.-
T Consensus 173 aCl~s 177 (269)
T COG1606 173 ACLAS 177 (269)
T ss_pred ccccc
Confidence 99974
No 59
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.1e-16 Score=159.50 Aligned_cols=165 Identities=22% Similarity=0.277 Sum_probs=120.5
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC-----
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN----- 422 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~----- 422 (591)
..+++++||||+|||++|+|+. + .|+ .|.+++|....
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk-------~---------------QGy----------------eViGl~m~~~~~~~~~ 44 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLK-------E---------------QGY----------------EVIGLFMKNWDEDGGG 44 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEEeeccCCCC
Confidence 4689999999999999999872 2 355 49999997544
Q ss_pred --CCHhhHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhhhh--hCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHH
Q 007749 423 --SSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQTL--TGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLA 497 (591)
Q Consensus 423 --ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a 497 (591)
++.++..+|+++|+.|||+|+++|+++.+.. +...|.+. .|.+| .++..+|-.-.++..+-++
T Consensus 45 ~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~TP----------NPci~CN~~iKF~~~l~~a-- 112 (356)
T COG0482 45 GCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTP----------NPCILCNKEIKFKALLDYA-- 112 (356)
T ss_pred cCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHHHhCCCCC----------CcchhcCHHHHHHHHHHHH--
Confidence 6778899999999999999999999987653 23333332 36666 3456778765565544332
Q ss_pred ccCcccccCCCCeEEEcCCchhhhh---------cccccccCCCC------------CCCcCCCCCcHHHHHHHHHHHHH
Q 007749 498 SLLPWVHNKPGFYLVLGSSNVDEGL---------RGYLTKYDCSS------------ADINPIGSISKQDLRTFLRWAAT 556 (591)
Q Consensus 498 ~~~~~~~~~~g~~lvl~t~n~sE~~---------~G~~t~~gd~~------------~~~~Pl~~l~K~~v~~l~~~~~~ 556 (591)
.+.| +-.+.|||+.... .|-... -|.+ ..++|||++.|.+||++ |+
T Consensus 113 -------~~lg-ad~iATGHYar~~~~~~~~~l~r~~D~~-KDQsYfL~~~~~~ql~~~lFPlG~l~K~evR~i----A~ 179 (356)
T COG0482 113 -------KELG-ADYIATGHYARQREDEGIELLLRGVDLN-KDQSYFLYALSQEQLERLLFPLGDLEKLEVRPI----AA 179 (356)
T ss_pred -------HHcC-CCeEEEeeeEeeecCCcccccccCCCcc-cchhheecccCHHHHhhccccCCCCCHHHHHHH----HH
Confidence 2336 4788898864322 121111 1333 35999999999999999 77
Q ss_pred hcCCccccccccCCCCCCcccCC
Q 007749 557 HLGYSSLAEIEAAPPTAELEPIR 579 (591)
Q Consensus 557 ~~~~~i~~~i~~~~psaeL~p~~ 579 (591)
+.|++ +.+|+-|.++|..+
T Consensus 180 ~~gL~----~a~KkdS~~ICFi~ 198 (356)
T COG0482 180 EKGLP----TAKKKDSQGICFIG 198 (356)
T ss_pred HcCCC----ccCcccCCcceecC
Confidence 88999 99999999999876
No 60
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.67 E-value=3.8e-16 Score=157.06 Aligned_cols=162 Identities=27% Similarity=0.375 Sum_probs=111.9
Q ss_pred HHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 007749 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (591)
Q Consensus 338 ~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 417 (591)
.|+++|++. ++++|++|||+||+++++++. + .|. .+++++
T Consensus 4 ~l~~~l~~~--~~vlVa~SGGvDSs~ll~la~-------~---------------~g~----------------~v~av~ 43 (252)
T TIGR00268 4 NLRNFLKEF--KKVLIAYSGGVDSSLLAAVCS-------D---------------AGT----------------EVLAIT 43 (252)
T ss_pred HHHHHHHhc--CCEEEEecCcHHHHHHHHHHH-------H---------------hCC----------------CEEEEE
Confidence 477888875 789999999999999888772 2 121 488999
Q ss_pred cCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHH
Q 007749 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLA 497 (591)
Q Consensus 418 m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a 497 (591)
+.+...+..+.+.|+++|+.+|++|++++++++.+. +.. ..+ +++..| .+.++..++.+|
T Consensus 44 ~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~~~~----~~~---n~~--------~~c~~c-----k~~~~~~l~~~A 103 (252)
T TIGR00268 44 VVSPSISPRELEDAIIIAKEIGVNHEFVKIDKMINP----FRA---NVE--------ERCYFC-----KKMVLSILVKEA 103 (252)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHHHHH----HHh---CCC--------cccchh-----hHHHHHHHHHHH
Confidence 998777788889999999999999999999765332 221 111 112211 122333444333
Q ss_pred ccCcccccCCCCeEEEcCCchhhhh---cccccccCCCCCCCcCCC--CCcHHHHHHHHHHHHHhcCCccccccccCCCC
Q 007749 498 SLLPWVHNKPGFYLVLGSSNVDEGL---RGYLTKYDCSSADINPIG--SISKQDLRTFLRWAATHLGYSSLAEIEAAPPT 572 (591)
Q Consensus 498 ~~~~~~~~~~g~~lvl~t~n~sE~~---~G~~t~~gd~~~~~~Pl~--~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~ps 572 (591)
++.|...++...|.++.. .|+....++ ++++||. +++|.+|+++ ++++|+| +|++|++
T Consensus 104 -------~~~g~~~I~~G~n~dD~~~~rpg~~a~~~~--~~~~PL~~~~l~K~eIr~l----a~~~gl~----~~~~ps~ 166 (252)
T TIGR00268 104 -------EKRGYDVVVDGTNADDLFDHRPGYRAVKEF--NGVSPWAEFGITKKEIREI----AKSLGIS----FPDKPSE 166 (252)
T ss_pred -------HHcCCCEEEECCCCcccccccHHHHHHHHc--CCCCcchhcCCCHHHHHHH----HHHcCCC----ccCCCCC
Confidence 344643344444666644 454444333 4569996 4899999999 8889999 9999999
Q ss_pred CCcc
Q 007749 573 AELE 576 (591)
Q Consensus 573 aeL~ 576 (591)
+||.
T Consensus 167 ~Cl~ 170 (252)
T TIGR00268 167 ACLA 170 (252)
T ss_pred CceE
Confidence 9985
No 61
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8e-15 Score=144.00 Aligned_cols=165 Identities=18% Similarity=0.279 Sum_probs=119.0
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCC-------
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS------- 420 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~------- 420 (591)
..+|+|+||||+|||+.|.|++ . .|. ++.+|||..
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~-------~---------------~g~----------------~v~gv~M~nWd~~de~ 46 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLLA-------A---------------RGY----------------NVTGVFMKNWDSLDEF 46 (377)
T ss_pred cceEEEEecCCchHHHHHHHHH-------h---------------cCC----------------CeeEEeeecccccccc
Confidence 4689999999999999888873 1 243 599999963
Q ss_pred --CCCCHhhHHHHHHHHHHhCCceEEEecHH-----HHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHH
Q 007749 421 --ENSSQETRMLAKKLADEIGSWHLDVSIDT-----VVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLA 493 (591)
Q Consensus 421 --~~ss~~t~~~A~~la~~lG~~~~~i~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l 493 (591)
....+.+..+|+.+|+.|+|+++.+|... +|..+++.++. |.+|+.++ .+|-+-+......
T Consensus 47 ~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~L~~Y~~--G~TPNPDI----------~CN~~IKFg~~~~ 114 (377)
T KOG2805|consen 47 GSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPFLEEYEN--GRTPNPDI----------LCNKHIKFGKFFK 114 (377)
T ss_pred ccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHHHHHHhc--CCCCCCCc----------cccceeeccHHHH
Confidence 33467899999999999999999999965 34445555554 77775322 4565544432222
Q ss_pred HHHHccCcccccCCCCeEEEcCCchhhhhccccccc-----------CCC------------CCCCcCCCCCcHHHHHHH
Q 007749 494 FMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKY-----------DCS------------SADINPIGSISKQDLRTF 550 (591)
Q Consensus 494 ~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~-----------gd~------------~~~~~Pl~~l~K~~v~~l 550 (591)
+.-++.|+ -+|+|||+....++-.+.. -|. ...+.||+.++|++||.|
T Consensus 115 --------~a~en~~~-d~latGHYAr~~~~~~~~~~~~l~~~~d~~KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~l 185 (377)
T KOG2805|consen 115 --------HAIENLGY-DWLATGHYARVVLEDEDNAESHLLISKDMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKL 185 (377)
T ss_pred --------HHHHhcCC-CeEEeeeeeeeecCcccCcceeEeecccccCCceeEeecccHHHHHhhhccCcccCHHHHHHH
Confidence 22234564 5899999876655543310 111 135889999999999999
Q ss_pred HHHHHHhcCCccccccccCCCCCCcccCC
Q 007749 551 LRWAATHLGYSSLAEIEAAPPTAELEPIR 579 (591)
Q Consensus 551 ~~~~~~~~~~~i~~~i~~~~psaeL~p~~ 579 (591)
|+..|+| +.+||.|.++|.++
T Consensus 186 ----A~~~gf~----~aeK~eSqGICFvg 206 (377)
T KOG2805|consen 186 ----AKQAGFP----NAEKPESQGICFVG 206 (377)
T ss_pred ----HHhcCCc----cccCcccceeEEec
Confidence 8888999 89999999999976
No 62
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.57 E-value=1.5e-14 Score=151.27 Aligned_cols=163 Identities=21% Similarity=0.250 Sum_probs=112.3
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhh
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t 427 (591)
.++++|++|||+||+++|+++. . .|. .|++++|+.. ..+
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~--------~--------------~G~----------------eV~av~~~~~---~~e 43 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQ--------E--------------QGY----------------EIVGVTMRVW---GDE 43 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHH--------H--------------cCC----------------cEEEEEecCc---chh
Confidence 3689999999999999887762 1 232 4899999864 234
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHH-HHHHHhhh--hhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccc
Q 007749 428 RMLAKKLADEIGSWHLDVSIDTVVS-AFLSLFQT--LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVH 504 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~ 504 (591)
.++|+++|+.||++|+++|+++.+. .+...+.+ ..|.+| ..+..+|..-|.+ .++.+|
T Consensus 44 ~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G~tp----------npC~~Cn~~iKf~--~L~~~A------- 104 (362)
T PRK14664 44 PQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTP----------NPCVMCNPLFKFR--MLIEWA------- 104 (362)
T ss_pred HHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcCCCC----------CCchhhhHHHHHH--HHHHHH-------
Confidence 5689999999999999999986554 22222222 235555 3456677654443 344334
Q ss_pred cCCCCeEEEcCCchhhhhc--c-cccccC-----CCC------------CCCcCCCCCcHHHHHHHHHHHHHhcCCcccc
Q 007749 505 NKPGFYLVLGSSNVDEGLR--G-YLTKYD-----CSS------------ADINPIGSISKQDLRTFLRWAATHLGYSSLA 564 (591)
Q Consensus 505 ~~~g~~lvl~t~n~sE~~~--G-~~t~~g-----d~~------------~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~ 564 (591)
++.| .-++.|||...... | +.-..| |.+ ..+.||++++|+|||++ +++.|++
T Consensus 105 ~~~G-~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsyfl~~l~~~~l~~~ifPLg~~~K~evr~~----A~~~gl~--- 176 (362)
T PRK14664 105 DKLG-CAWIATGHYSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDILRRCIFPLGNYTKQTVREY----LREKGYE--- 176 (362)
T ss_pred HHcC-CCEEEECCccccccCCCeEEEEEcCCCcchHHHHHHhcCHHHHhHHhccCccCCHHHHHHH----HHHcCCC---
Confidence 3446 47899999874321 2 111112 222 36899999999999999 7788988
Q ss_pred cc-ccCCCCCCcccCC
Q 007749 565 EI-EAAPPTAELEPIR 579 (591)
Q Consensus 565 ~i-~~~~psaeL~p~~ 579 (591)
+ .+|+.|.++|.+.
T Consensus 177 -~~a~k~dSq~iCFi~ 191 (362)
T PRK14664 177 -AKSKEGESMEVCFIK 191 (362)
T ss_pred -CCCCCCCCCcceeec
Confidence 6 7899999999974
No 63
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.56 E-value=3.7e-14 Score=145.99 Aligned_cols=171 Identities=23% Similarity=0.300 Sum_probs=108.6
Q ss_pred HHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 007749 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (591)
Q Consensus 337 ~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 416 (591)
..|++.+. .++++|++|||+||+++|+++ .+++ |. +++++
T Consensus 8 ~~l~~~v~---~~kVvValSGGVDSsvla~ll-------~~~~--------------G~----------------~v~av 47 (311)
T TIGR00884 8 EEIREQVG---DAKVIIALSGGVDSSVAAVLA-------HRAI--------------GD----------------RLTCV 47 (311)
T ss_pred HHHHHHhC---CCcEEEEecCChHHHHHHHHH-------HHHh--------------CC----------------CEEEE
Confidence 34556554 389999999999999998887 3442 32 48999
Q ss_pred ecCCCCCCHhhHHHHHHH-HHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHH
Q 007749 417 FMGSENSSQETRMLAKKL-ADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFM 495 (591)
Q Consensus 417 ~m~~~~ss~~t~~~A~~l-a~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~ 495 (591)
++.+...+..+.+++.+. ++.+|++|+++++++.+ .+.+..+. +| .+ .+.+..|.+...+..
T Consensus 48 ~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~f---l~~l~~v~--~p----------~~--~r~~~~~~~~~~~~~ 110 (311)
T TIGR00884 48 FVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERF---LSALKGVT--DP----------EE--KRKIIGRVFIEVFER 110 (311)
T ss_pred EEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHH---HhhhcCCC--Ch----------HH--HHHHHHHHHHHHHHH
Confidence 999877666677777665 55899999999997643 22232211 11 11 112222233333443
Q ss_pred HHccCcccccCCC-C-eEEEcCC--chhhhhccc----cccc---C----CCCCCCcCCCCCcHHHHHHHHHHHHHhcCC
Q 007749 496 LASLLPWVHNKPG-F-YLVLGSS--NVDEGLRGY----LTKY---D----CSSADINPIGSISKQDLRTFLRWAATHLGY 560 (591)
Q Consensus 496 ~a~~~~~~~~~~g-~-~lvl~t~--n~sE~~~G~----~t~~---g----d~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~ 560 (591)
+|. +.| . .++.||. |..|...|- .+.+ | ...+.+.||.+++|+|||++ ++.+|+
T Consensus 111 ~A~-------~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~~~~~~~ii~PL~~l~K~EVr~l----a~~lgL 179 (311)
T TIGR00884 111 EAK-------KIGDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKL----GKELGL 179 (311)
T ss_pred HHH-------HCCCCCEEEECCCChhhhhhccChhHhhhccCccccCChhhcCceEEEcccCcHHHHHHH----HHHcCC
Confidence 333 334 2 3666662 333544441 0111 1 12458999999999999999 888898
Q ss_pred ccccccccCC-CCCCcc
Q 007749 561 SSLAEIEAAP-PTAELE 576 (591)
Q Consensus 561 ~i~~~i~~~~-psaeL~ 576 (591)
|. +-+|++| |.|||.
T Consensus 180 p~-~~~~~~Pf~~p~La 195 (311)
T TIGR00884 180 PE-EIVWRHPFPGPGLA 195 (311)
T ss_pred CH-HHhhCCCCCCCceE
Confidence 72 5578999 999986
No 64
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.55 E-value=2.7e-14 Score=149.60 Aligned_cols=165 Identities=22% Similarity=0.278 Sum_probs=111.8
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC--CCHh
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQE 426 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~--ss~~ 426 (591)
++++|++|||+||+++|+|+. + .|. .|++++|.... .+..
T Consensus 6 ~kVlValSGGVDSsvaa~LL~-------~---------------~G~----------------~V~~v~~~~~~~~~~~~ 47 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLL-------E---------------AGY----------------EVTGVTFRFYEFNGSTE 47 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEecCCCCCChH
Confidence 689999999999999888872 2 232 48999997543 3566
Q ss_pred hHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhhhh--hCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCccc
Q 007749 427 TRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQTL--TGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWV 503 (591)
Q Consensus 427 t~~~A~~la~~lG~~~~~i~i~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~ 503 (591)
+.++|+++|+.||++|+++|+++.+.. +.+.|.+. .+.+| ..+..+|-.. |...++.+|.
T Consensus 48 d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~~g~tp----------npC~~Cnr~i--kf~~l~~~A~----- 110 (360)
T PRK14665 48 YLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYMSGHTP----------VPCTLCNNYL--KWPLLAKIAD----- 110 (360)
T ss_pred HHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHhccCCC----------CHHHHHHHHH--HHHHHHHHHH-----
Confidence 789999999999999999999876543 22222221 13443 3344555543 3334454443
Q ss_pred ccCCCCeEEEcCCchhhh--hcc-ccccc-----CCCC------------CCCcCCCCCcHHHHHHHHHHHHHhcCC-cc
Q 007749 504 HNKPGFYLVLGSSNVDEG--LRG-YLTKY-----DCSS------------ADINPIGSISKQDLRTFLRWAATHLGY-SS 562 (591)
Q Consensus 504 ~~~~g~~lvl~t~n~sE~--~~G-~~t~~-----gd~~------------~~~~Pl~~l~K~~v~~l~~~~~~~~~~-~i 562 (591)
+.| .-.+.|||.... .-| |.... .|.+ ..+.||++++|+|||++ ++++|+ +
T Consensus 111 --~~G-~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyfL~~l~~~~l~~~ifPLg~~~K~eVr~~----A~~~gl~~- 182 (360)
T PRK14665 111 --EMG-IFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKSEARAY----AAERGFEK- 182 (360)
T ss_pred --HcC-CCEEEECCccceeccCCcEEEEeecCCCCCceEEecCCCHHHHhheeccCcCCCHHHHHHH----HHHCCCCc-
Confidence 346 467888887532 112 21111 2222 35899999999999999 777886 5
Q ss_pred ccccccCCCCCCcccCC
Q 007749 563 LAEIEAAPPTAELEPIR 579 (591)
Q Consensus 563 ~~~i~~~~psaeL~p~~ 579 (591)
+.+|+.|+++|..+
T Consensus 183 ---~a~k~eSq~iCF~~ 196 (360)
T PRK14665 183 ---VAKKRDSLGVCFCP 196 (360)
T ss_pred ---cCcCCCCCccccCC
Confidence 78999999999875
No 65
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.53 E-value=7.8e-14 Score=142.31 Aligned_cols=162 Identities=25% Similarity=0.325 Sum_probs=102.8
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
+++|++|||+||+++|+++ .+++ |. .++++++.+......+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll-------~~~l--------------G~----------------~v~aV~vd~g~~~~~E~~ 43 (295)
T cd01997 1 KVILALSGGVDSTVAAVLL-------HKAI--------------GD----------------RLTCVFVDNGLLRKNEAE 43 (295)
T ss_pred CEEEEEcCChHHHHHHHHH-------HHHh--------------CC----------------cEEEEEecCCCCChHHHH
Confidence 5899999999999999887 3442 32 489999998776777889
Q ss_pred HHHHHHHHhCC-ceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCCC
Q 007749 430 LAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (591)
Q Consensus 430 ~A~~la~~lG~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g 508 (591)
.++++|+.+|+ +|+++++++. +.+.+..+. +| .. ..-+.-|.+.-.+...| ++.|
T Consensus 44 ~~~~~~~~~g~i~~~vvd~~e~---fl~~l~~v~--np----------e~--rr~~~g~~~~~~l~~~A-------~~~g 99 (295)
T cd01997 44 RVEELFSKLLGINLIVVDASER---FLSALKGVT--DP----------EE--KRKIIGETFIEVFEEEA-------KKLG 99 (295)
T ss_pred HHHHHHHHhCCCcEEEEcCcHH---HHHHhcCCC--CH----------HH--HHHHhhHHHHHHHHHHH-------HHcC
Confidence 99999999987 9999999753 222222110 01 10 01111123333344333 3434
Q ss_pred -C-eEEEcC--Cchhhhhcccc------ccc---C----CCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccCC-
Q 007749 509 -F-YLVLGS--SNVDEGLRGYL------TKY---D----CSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAP- 570 (591)
Q Consensus 509 -~-~lvl~t--~n~sE~~~G~~------t~~---g----d~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~- 570 (591)
. .++.|| +|..|...... +.. | ...+.+.||.+++|.|||++ ++++|+|. +-+|++|
T Consensus 100 ~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~a~~~~~vi~PL~~l~K~EVR~l----ar~lGLp~-~~~~~~Pf 174 (295)
T cd01997 100 LAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPEDMKLKLIEPLRDLFKDEVREL----GRELGLPE-EIVERHPF 174 (295)
T ss_pred CCCEEEECCcccchhhhcccccccccccccccccccchHhhCCcccccccCcHHHHHHH----HHHcCCCc-hhhCCCCC
Confidence 2 355554 22334332111 001 2 22467999999999999999 88899871 3459999
Q ss_pred CCCCccc
Q 007749 571 PTAELEP 577 (591)
Q Consensus 571 psaeL~p 577 (591)
|.|||.-
T Consensus 175 p~p~La~ 181 (295)
T cd01997 175 PGPGLAV 181 (295)
T ss_pred CCCccee
Confidence 9999974
No 66
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.50 E-value=3.4e-13 Score=141.74 Aligned_cols=164 Identities=24% Similarity=0.290 Sum_probs=108.5
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC-------
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN------- 422 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~------- 422 (591)
+++|++|||+||+++|+++. + .+. .+++++|....
T Consensus 1 kVlValSGGvDSsvla~lL~-------~---------------~g~----------------~v~~v~i~~~~~~~~~~~ 42 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLK-------E---------------QGY----------------EVIGVFMKNWDEDDGKGG 42 (349)
T ss_pred CEEEEecCCHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEecccccccccC
Confidence 48999999999999888762 1 232 38899986542
Q ss_pred -CCHhhHHHHHHHHHHhCCceEEEecHHHHH-HHHHHhhh--hhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHc
Q 007749 423 -SSQETRMLAKKLADEIGSWHLDVSIDTVVS-AFLSLFQT--LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLAS 498 (591)
Q Consensus 423 -ss~~t~~~A~~la~~lG~~~~~i~i~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~ 498 (591)
.+..+.++|+++|+.+|++|+++++++.+. .+...+.+ ..|.+| ..+..+|..- |...+..+|.
T Consensus 43 ~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~i~~~~~g~tp----------npc~~C~r~i--kf~~l~~~A~ 110 (349)
T cd01998 43 CCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPFLEEYKKGRTP----------NPDILCNKEI--KFGALLDYAK 110 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHHHHHHHcCCCC----------CchHhhhhHH--HHHHHHHHHH
Confidence 356788999999999999999999976443 12222221 124444 2344555543 3333333343
Q ss_pred cCcccccCCCCeEEEcCCchhhhhc---c-cccc-----cCCC------------CCCCcCCCCCcHHHHHHHHHHHHHh
Q 007749 499 LLPWVHNKPGFYLVLGSSNVDEGLR---G-YLTK-----YDCS------------SADINPIGSISKQDLRTFLRWAATH 557 (591)
Q Consensus 499 ~~~~~~~~~g~~lvl~t~n~sE~~~---G-~~t~-----~gd~------------~~~~~Pl~~l~K~~v~~l~~~~~~~ 557 (591)
+.| .-.+.|||...... + +.-+ .+|. ...+.||++++|+|||++ +++
T Consensus 111 -------~~g-~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~~l~~ii~PL~~~~K~eVr~~----A~~ 178 (349)
T cd01998 111 -------KLG-ADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQLSRLIFPLGDLTKPEVREI----AKE 178 (349)
T ss_pred -------HcC-cCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCHHHHhheeecCCCCCHHHHHHH----HHH
Confidence 335 35677776543211 1 1010 1122 357999999999999999 788
Q ss_pred cCCccccccccCCCCCCcccCC
Q 007749 558 LGYSSLAEIEAAPPTAELEPIR 579 (591)
Q Consensus 558 ~~~~i~~~i~~~~psaeL~p~~ 579 (591)
+|+| +++||.|+++|.++
T Consensus 179 ~gl~----~~~k~~s~~iCFi~ 196 (349)
T cd01998 179 LGLP----VAKKKDSQGICFIG 196 (349)
T ss_pred cCCC----CCCCCCCCceEEec
Confidence 8999 99999999999976
No 67
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.50 E-value=2.3e-13 Score=142.79 Aligned_cols=165 Identities=22% Similarity=0.313 Sum_probs=109.4
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC------
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN------ 422 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~------ 422 (591)
++++|+||||+||+++|+++. + .+. .|.+++|....
T Consensus 1 ~kVlValSGGvDSsvla~lL~-------~---------------~G~----------------~V~~v~~~~~~~~~~~~ 42 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLK-------E---------------QGY----------------EVIGVFMKLWDDDDETG 42 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEeCCCcccccc
Confidence 378999999999999887762 1 232 37888887532
Q ss_pred ----CCHhhHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhhh--hhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHH
Q 007749 423 ----SSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQT--LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFM 495 (591)
Q Consensus 423 ----ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~ 495 (591)
.+..+.+.|+++|+.||++|+++++++.+.. +.+.+.+ ..|.+| ..+..+|... |...++.
T Consensus 43 ~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~~~~~~~~~g~tp----------npc~~C~r~i--k~~~l~~ 110 (346)
T PRK00143 43 KGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVIDYFLDEYKAGRTP----------NPCVLCNKEI--KFKAFLE 110 (346)
T ss_pred cCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHHHHHcCCCC----------CcChhhhHHH--HHHHHHH
Confidence 2567888999999999999999999765531 2222221 124444 3455667553 3334444
Q ss_pred HHccCcccccCCCCeEEEcCCchhhh------hcc--------cc---cccCCCCCCCcCCCCCcHHHHHHHHHHHHHhc
Q 007749 496 LASLLPWVHNKPGFYLVLGSSNVDEG------LRG--------YL---TKYDCSSADINPIGSISKQDLRTFLRWAATHL 558 (591)
Q Consensus 496 ~a~~~~~~~~~~g~~lvl~t~n~sE~------~~G--------~~---t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~ 558 (591)
.|. +.|. -.|.|||.... ..| |+ .........+.||++++|.|||++ ++++
T Consensus 111 ~A~-------~~g~-~~IATGH~a~d~~~~~L~rg~d~~kDqsy~l~~l~~~~l~~~i~PL~~~~K~eVr~~----A~~~ 178 (346)
T PRK00143 111 YAR-------ELGA-DYIATGHYARIRDGRELLRGVDPNKDQSYFLYQLTQEQLAKLLFPLGELTKPEVREI----AEEA 178 (346)
T ss_pred HHH-------HCCC-CEEEeeeeccccccceEEEccCCCcChhhhhccCCHHHhcceeccCccCCHHHHHHH----HHHc
Confidence 443 3353 56777664321 112 11 000112357999999999999999 8888
Q ss_pred CCccccccccCCCCCCcccCC
Q 007749 559 GYSSLAEIEAAPPTAELEPIR 579 (591)
Q Consensus 559 ~~~i~~~i~~~~psaeL~p~~ 579 (591)
|+| ++++|.|.++|.++
T Consensus 179 gl~----~~~k~~s~~icf~~ 195 (346)
T PRK00143 179 GLP----VAKKKDSQGICFIG 195 (346)
T ss_pred CCC----cCCCCCCCcccCCC
Confidence 999 89999999998865
No 68
>PLN02347 GMP synthetase
Probab=99.50 E-value=1.1e-13 Score=151.95 Aligned_cols=172 Identities=21% Similarity=0.224 Sum_probs=104.9
Q ss_pred HHHHHHHhC-CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 007749 339 LWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (591)
Q Consensus 339 l~d~l~~~~-~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 417 (591)
+.+..++.+ .++++||||||+||+++|+++ .+++ | + +++|++
T Consensus 219 i~~i~~~~~~~~~vvvalSGGVDSsvla~l~-------~~al--------------G-~---------------~v~av~ 261 (536)
T PLN02347 219 IELIKATVGPDEHVICALSGGVDSTVAATLV-------HKAI--------------G-D---------------RLHCVF 261 (536)
T ss_pred HHHHHHHhccCCeEEEEecCChhHHHHHHHH-------HHHh--------------C-C---------------cEEEEE
Confidence 344444555 467999999999999999988 4553 3 2 599999
Q ss_pred cCCCCCCHhhHHHH-HHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhh---hhhhhhcHHHH
Q 007749 418 MGSENSSQETRMLA-KKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQ---NIQARIRMVLA 493 (591)
Q Consensus 418 m~~~~ss~~t~~~A-~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---N~qaR~R~~~l 493 (591)
+++...+..+.++| +.+|+.+|++|.++|+++ .|++.++.+.+.+. ++.++.. .+..++.
T Consensus 262 id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e---~fl~~l~~~~~pe~---------k~~~~~~~f~~~f~~~~---- 325 (536)
T PLN02347 262 VDNGLLRYKEQERVMETFKRDLHLPVTCVDASE---RFLSKLKGVTDPEK---------KRKIIGAEFIEVFDEFA---- 325 (536)
T ss_pred EeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcH---HHHhhCCCCCChHH---------hcchhCchHHHHHHHHH----
Confidence 99766555444555 889999999999999975 44555555432211 1222222 1111111
Q ss_pred HHHHccCcccccCCC---CeEEEcC--Cchhhh--hccc--------cc-------ccCCCCCCCcCCCCCcHHHHHHHH
Q 007749 494 FMLASLLPWVHNKPG---FYLVLGS--SNVDEG--LRGY--------LT-------KYDCSSADINPIGSISKQDLRTFL 551 (591)
Q Consensus 494 ~~~a~~~~~~~~~~g---~~lvl~t--~n~sE~--~~G~--------~t-------~~gd~~~~~~Pl~~l~K~~v~~l~ 551 (591)
- .++.+.| ..++-|| .|..|+ ..|. -| ......+.++||++++|+|||++
T Consensus 326 ~-------~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn~~~l~~~~~~~ii~PL~~l~K~eVR~l- 397 (536)
T PLN02347 326 H-------KLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKL- 397 (536)
T ss_pred H-------HHHHhhCCCCcEEccCCcccccccccCCCCCccccccceeeecccccChHHHHCccccchhhCcHHHHHHH-
Confidence 0 1111112 1245555 233342 2332 00 11233578999999999999999
Q ss_pred HHHHHhcCCccccccc-cC-CCCCCcc
Q 007749 552 RWAATHLGYSSLAEIE-AA-PPTAELE 576 (591)
Q Consensus 552 ~~~~~~~~~~i~~~i~-~~-~psaeL~ 576 (591)
++++|+| ++++ ++ +|.|||.
T Consensus 398 ---a~~lgl~--~~~~~~~p~p~p~La 419 (536)
T PLN02347 398 ---GRLLGVP--EAFLKRHPFPGPGLA 419 (536)
T ss_pred ---HHHcCCC--HHHhcCCCcCCCCEE
Confidence 7788876 5554 55 5678986
No 69
>PRK00919 GMP synthase subunit B; Validated
Probab=99.48 E-value=5e-13 Score=136.73 Aligned_cols=174 Identities=21% Similarity=0.221 Sum_probs=110.5
Q ss_pred hchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcce
Q 007749 333 FGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRI 412 (591)
Q Consensus 333 ~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (591)
......|++.+. .++++|++|||+||+++|+++ .+++ |. +
T Consensus 9 ~~~~~~l~~~~~---~~kVlVa~SGGVDSsvla~la-------~~~l--------------G~----------------~ 48 (307)
T PRK00919 9 EEAIEEIREEIG---DGKAIIALSGGVDSSVAAVLA-------HRAI--------------GD----------------R 48 (307)
T ss_pred HHHHHHHHHHhC---CCCEEEEecCCHHHHHHHHHH-------HHHh--------------CC----------------e
Confidence 334455666654 489999999999999998887 3442 32 5
Q ss_pred EEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHH
Q 007749 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVL 492 (591)
Q Consensus 413 v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~ 492 (591)
++++++.+......+.+.|+++|+.+ ++|.++++++.+ .+.+..+ .+| .. .+.+..|.+...
T Consensus 49 v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~f---l~~L~~v--~np----------e~--rr~~c~r~~~~~ 110 (307)
T PRK00919 49 LTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRF---LDALKGV--TDP----------EE--KRKIIGETFIRV 110 (307)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHH---HHhccCC--CCh----------HH--hhhHHHHHHHHH
Confidence 89999998877788899999999988 999999997633 2223221 111 11 112222333333
Q ss_pred HHHHHccCcccccCCCC-eEEEcCC--chhhhhcccccc-------cCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCcc
Q 007749 493 AFMLASLLPWVHNKPGF-YLVLGSS--NVDEGLRGYLTK-------YDCSSADINPIGSISKQDLRTFLRWAATHLGYSS 562 (591)
Q Consensus 493 l~~~a~~~~~~~~~~g~-~lvl~t~--n~sE~~~G~~t~-------~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i 562 (591)
+..+| ++.|. .++.||. |..|..-|..+. .....+.+.||.+++|.|||++ ++++|+|
T Consensus 111 ~~~~A-------~~~g~~~Ia~Gtn~dD~iE~r~~iks~~nv~gl~~~~~~~Ii~PL~~l~K~EVr~l----a~~lGLp- 178 (307)
T PRK00919 111 FEEVA-------KEIGAEYLVQGTIAPDWIESEGGIKSHHNVGGLPEGMVLKIVEPLRDLYKDEVREV----ARALGLP- 178 (307)
T ss_pred HHHHH-------HHcCCCEEEECCCCcchhhccCcccccccccccChhhcCCcccCchhCcHHHHHHH----HHHcCCC-
Confidence 33333 33342 3666652 222332221111 1123468999999999999999 8889988
Q ss_pred ccccc--cCCCCCCccc
Q 007749 563 LAEIE--AAPPTAELEP 577 (591)
Q Consensus 563 ~~~i~--~~~psaeL~p 577 (591)
..++ ++||+|||.-
T Consensus 179 -~~~~~r~p~~~pcLa~ 194 (307)
T PRK00919 179 -EEISERMPFPGPGLAV 194 (307)
T ss_pred -hhhhCCCCCCCCceeE
Confidence 3333 6779999863
No 70
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=99.47 E-value=3.8e-13 Score=141.11 Aligned_cols=165 Identities=20% Similarity=0.172 Sum_probs=108.0
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCC-------
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE------- 421 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~------- 421 (591)
++++|++|||+||+++|+++. + .+. .|++++|...
T Consensus 1 ~kVlValSGGvDSsv~a~lL~-------~---------------~G~----------------~V~~v~~~~~~~~~~~~ 42 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLK-------Q---------------QGY----------------EVVGVFMKNWEEDDKND 42 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEEccccccccc
Confidence 368999999999999988872 2 232 4899999411
Q ss_pred ---CCCHhhHHHHHHHHHHhCCceEEEecHHHHHH-HHHHhhhh--hCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHH
Q 007749 422 ---NSSQETRMLAKKLADEIGSWHLDVSIDTVVSA-FLSLFQTL--TGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFM 495 (591)
Q Consensus 422 ---~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~ 495 (591)
..+..+.++|+++|+.||++|+++++++.+.. +...+.+. .|.+| ..+..+|..-|.+ .++.
T Consensus 43 ~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~~~~~~y~~g~tp----------npC~~Cnr~iKf~--~l~~ 110 (352)
T TIGR00420 43 GHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFEPFIQEYKEGRTP----------NPDILCNKFIKFG--AFLE 110 (352)
T ss_pred ccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHHHHHHHHcCCCC----------CcchhhhHHHHHH--HHHH
Confidence 13566889999999999999999999875532 22222221 24444 3345566653333 3333
Q ss_pred HHccCcccccCC-CCeEEEcCCchh---hhhccccccc-----CCC------------CCCCcCCCCCcHHHHHHHHHHH
Q 007749 496 LASLLPWVHNKP-GFYLVLGSSNVD---EGLRGYLTKY-----DCS------------SADINPIGSISKQDLRTFLRWA 554 (591)
Q Consensus 496 ~a~~~~~~~~~~-g~~lvl~t~n~s---E~~~G~~t~~-----gd~------------~~~~~Pl~~l~K~~v~~l~~~~ 554 (591)
.| .+. |. -.+.|||.. +....+.-+. .|. ...+.||++++|.||+++
T Consensus 111 ~a-------~~~~G~-~~IATGHya~~~~d~~~~~l~~~~d~~kDqsy~L~~l~~~~l~~~i~PL~~~~K~EVr~~---- 178 (352)
T TIGR00420 111 YA-------AELLGN-DKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLYHLSHEQLAKLLFPLGELLKPEVRQI---- 178 (352)
T ss_pred HH-------HHHcCC-CEEEECCcceEeCCCCcEEEEEccCCCcCcceecccCCHHHhhhhcccCCCCCHHHHHHH----
Confidence 33 232 53 567777743 1111111111 122 347889999999999999
Q ss_pred HHhcCCccccccccCCCCCCcccCC
Q 007749 555 ATHLGYSSLAEIEAAPPTAELEPIR 579 (591)
Q Consensus 555 ~~~~~~~i~~~i~~~~psaeL~p~~ 579 (591)
++..|++ .++|+.|.++|..+
T Consensus 179 A~~~gl~----~~~k~~Sq~iCFi~ 199 (352)
T TIGR00420 179 AKNAGLP----TAEKKDSQGICFIG 199 (352)
T ss_pred HHHcCCC----CCCCCCCCCeEEec
Confidence 7778988 88899999999764
No 71
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.42 E-value=1.4e-12 Score=143.56 Aligned_cols=177 Identities=20% Similarity=0.201 Sum_probs=108.3
Q ss_pred HHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhc
Q 007749 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (591)
Q Consensus 331 ~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (591)
........|+++++. ++++|++|||+||+++|+++ .+++ | .
T Consensus 201 ~~~~~~~~l~~~v~~---~~vlva~SGGvDS~vll~ll-------~~~l--------------g-~-------------- 241 (511)
T PRK00074 201 FIEEAIEEIREQVGD---KKVILGLSGGVDSSVAAVLL-------HKAI--------------G-D-------------- 241 (511)
T ss_pred HHHHHHHHHHHhcCC---CcEEEEeCCCccHHHHHHHH-------HHHh--------------C-C--------------
Confidence 334444567776653 79999999999999998887 3442 3 1
Q ss_pred ceEEEEecCCCCCCHhhHHHHHH-HHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhc
Q 007749 411 RIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIR 489 (591)
Q Consensus 411 ~~v~~v~m~~~~ss~~t~~~A~~-la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R 489 (591)
+++++++++......+.+++.+ +|+.+|++|+++++++.+ .+.+..+. .| .+ ...+.-+.+
T Consensus 242 -~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f---~~~l~g~~--~~----------~~--~r~~~~~~~ 303 (511)
T PRK00074 242 -QLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRF---LSALAGVT--DP----------EE--KRKIIGREF 303 (511)
T ss_pred -ceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHH---HHhccCCC--Cc----------HH--hhhhhhHHH
Confidence 4899999987655566677775 789999999999997543 22222210 11 11 001110111
Q ss_pred HHHHHHHHccCcccccCC-CCeEEEcCC-chhhhh--cccc---cc------cCC----CCCCCcCCCCCcHHHHHHHHH
Q 007749 490 MVLAFMLASLLPWVHNKP-GFYLVLGSS-NVDEGL--RGYL---TK------YDC----SSADINPIGSISKQDLRTFLR 552 (591)
Q Consensus 490 ~~~l~~~a~~~~~~~~~~-g~~lvl~t~-n~sE~~--~G~~---t~------~gd----~~~~~~Pl~~l~K~~v~~l~~ 552 (591)
...+. ..+.+. |. -+|.|| |+++.. .+.. +. .|. ..+.+.||.+++|.|||++
T Consensus 304 ~~~~~-------~~a~~~~g~-~~latGhn~dD~~Et~~~~~~~~ik~~~~l~Gl~~~~~~~ii~PL~~l~K~EIr~~-- 373 (511)
T PRK00074 304 IEVFE-------EEAKKLGGV-KFLAQGTLYPDVIESGGTKKAATIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKL-- 373 (511)
T ss_pred HHHHH-------HHHHHccCC-CEEEECCCcchhhhhcCCCCccccccccCccCcChhHhcccccchhhcCHHHHHHH--
Confidence 11222 334444 43 334443 344321 1110 00 122 2368999999999999999
Q ss_pred HHHHhcCCccccccccCC-CCCCccc
Q 007749 553 WAATHLGYSSLAEIEAAP-PTAELEP 577 (591)
Q Consensus 553 ~~~~~~~~~i~~~i~~~~-psaeL~p 577 (591)
++++|+| .+.+|++| |.|||.-
T Consensus 374 --a~~~gLp-~~~~~~~p~p~~~la~ 396 (511)
T PRK00074 374 --GLELGLP-EEIVYRHPFPGPGLAI 396 (511)
T ss_pred --HHHcCCC-HHHhCCCCCCCCceee
Confidence 7778876 25577999 9999863
No 72
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.36 E-value=6.5e-13 Score=129.20 Aligned_cols=163 Identities=23% Similarity=0.307 Sum_probs=112.3
Q ss_pred HHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCC
Q 007749 344 RRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS 423 (591)
Q Consensus 344 ~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~s 423 (591)
.+.|.+++++|||||+|||++|.|+ .+|+ |. ++++++.....-
T Consensus 17 ~~vg~~kvi~alSGGVDSsv~a~L~-------~~Ai--------------Gd----------------~l~cvfVD~GLl 59 (315)
T COG0519 17 EQVGDGKVILALSGGVDSSVAAVLA-------HRAI--------------GD----------------QLTCVFVDHGLL 59 (315)
T ss_pred HHhCCceEEEEecCCCcHHHHHHHH-------HHHh--------------hc----------------ceEEEEecCCcc
Confidence 4567889999999999999999888 4675 31 589999997666
Q ss_pred CHhhHHHHHH-HHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcc
Q 007749 424 SQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (591)
Q Consensus 424 s~~t~~~A~~-la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~ 502 (591)
...+.+...+ +.+.+|++...+|-. +.|++.++.++..+.+.+.+|.++.+ .++ +
T Consensus 60 R~~E~e~V~~~f~~~~~~nl~~VdA~---~~Fl~~L~GvtDPE~KRKiIG~~FI~--VFe-------------------~ 115 (315)
T COG0519 60 RKGEAEQVVEMFREHLGLNLIVVDAK---DRFLSALKGVTDPEEKRKIIGREFIE--VFE-------------------E 115 (315)
T ss_pred cCCcHHHHHHHHHhhcCCceEEEchH---HHHHHHhcCCCCHHHHHHHHHHHHHH--HHH-------------------H
Confidence 5555555554 666699999999885 57788888776555555444433221 111 1
Q ss_pred cccCCC-CeEEEcC--------C------chhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccc
Q 007749 503 VHNKPG-FYLVLGS--------S------NVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (591)
Q Consensus 503 ~~~~~g-~~lvl~t--------~------n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~ 567 (591)
.|++.+ -.|+.|| + =+|.+.+|-... .+....+.||.+|+|+|||+| ++.+|+| ++++
T Consensus 116 ea~k~~~~~LaQGTiYpDvIES~~g~~~~IKSHHNVGGLP~-~m~lkLvEPLr~LfKDEVR~l----g~~LGlp--~~iv 188 (315)
T COG0519 116 EAKKLGAEFLAQGTIYPDVIESGTGKAGTIKSHHNVGGLPE-DMKLKLVEPLRELFKDEVREL----GRELGLP--EEIV 188 (315)
T ss_pred HHHhCCcceEEecccccceeeecCCCCCccccccccCCCcc-ccceeeeHHHHHHhHHHHHHH----HHHhCCC--HHHh
Confidence 111111 0233443 1 245666665443 244568999999999999999 8889988 9999
Q ss_pred cCCCCCC
Q 007749 568 AAPPTAE 574 (591)
Q Consensus 568 ~~~psae 574 (591)
.+.|.|+
T Consensus 189 ~RhPFPG 195 (315)
T COG0519 189 YRHPFPG 195 (315)
T ss_pred ccCCCCC
Confidence 9999876
No 73
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.36 E-value=4.7e-12 Score=123.30 Aligned_cols=152 Identities=21% Similarity=0.169 Sum_probs=101.8
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHHH
Q 007749 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (591)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~ 430 (591)
++|++|||+||++++.++. +. +.. .++++++.....+..+.+.
T Consensus 1 vvva~SGG~DS~~ll~ll~-------~~---------------~~~---------------~v~~v~vd~g~~~~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAV-------DA---------------LGD---------------RVLAVTATSPLFPRRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHHH-------HH---------------hCC---------------cEEEEEeCCCCCCHHHHHH
Confidence 5899999999999888772 22 111 3789999877667889999
Q ss_pred HHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCCCCe
Q 007749 431 AKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFY 510 (591)
Q Consensus 431 A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~ 510 (591)
|+++|+.+|++|+++++++..... +. +..+ . ......+.|+..+..+|. +.|.
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~~~~~---~~---~~~~-----------~--~~~~~r~~~~~~l~~~a~-------~~g~- 96 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDELDDPE---FA---KNPP-----------D--RCYLCKKALYEALKEIAE-------ELGL- 96 (202)
T ss_pred HHHHHHHcCCcEEEEeCCccccHH---Hh---cCCC-----------C--ccchhHHHHHHHHHHHHH-------HCCC-
Confidence 999999999999999997533211 11 1111 1 112333445545554443 4453
Q ss_pred EEEcCC-chhhhhcc---cccccCCCCCCCcCCC--CCcHHHHHHHHHHHHHhcCCccccccccCCCCCCcc
Q 007749 511 LVLGSS-NVDEGLRG---YLTKYDCSSADINPIG--SISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELE 576 (591)
Q Consensus 511 lvl~t~-n~sE~~~G---~~t~~gd~~~~~~Pl~--~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~psaeL~ 576 (591)
-++.|| |.++..-+ ..... ....+.||. +++|.+|+++ ++++|+| ++++|+++|++
T Consensus 97 ~~I~~G~~~dD~~e~~~~~~~~~--~~~iirPL~~~~~~K~ei~~~----a~~~gl~----~~~~~~~~c~~ 158 (202)
T cd01990 97 DVVLDGTNADDLGDYRPGLKALR--ELGVRSPLAEAGLGKAEIREL----ARELGLP----TWDKPAMACLA 158 (202)
T ss_pred CEEEEcCccccCcccChHHHHHH--HcCCcCchhhcCCCHHHHHHH----HHHcCCC----CcCCCCcchHH
Confidence 333343 56665433 22222 246899998 7999999999 7778988 78999999974
No 74
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.31 E-value=8.3e-12 Score=133.43 Aligned_cols=155 Identities=22% Similarity=0.223 Sum_probs=105.0
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCC-CCCCHhh
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS-ENSSQET 427 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~-~~ss~~t 427 (591)
++++++||||+||+++|.++. + .|. .++++++.+ .++++.+
T Consensus 177 gkvvvllSGGiDS~vaa~l~~-------k---------------~G~----------------~v~av~~~~~~~~~~~~ 218 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAM-------K---------------RGV----------------EIEAVHFHSPPYTSERA 218 (394)
T ss_pred CCEEEEECCChhHHHHHHHHH-------H---------------CCC----------------EEEEEEEeCCCCCcHHH
Confidence 579999999999999888762 2 132 478888865 3567778
Q ss_pred HHHHHHHHHHhC-----CceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcc
Q 007749 428 RMLAKKLADEIG-----SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (591)
Q Consensus 428 ~~~A~~la~~lG-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~ 502 (591)
.+.++++|+.|+ ++|+++|++++.+++.. ..+ .. ..+++..|+++.++..+|+
T Consensus 219 ~~~~~~~a~~l~~~~~~i~~~vv~~~~~~~~i~~-------~~~----------~~-~~~v~~Rr~~~~~a~~~A~---- 276 (394)
T PRK01565 219 KEKVIDLARILAKYGGRIKLHVVPFTEIQEEIKK-------KVP----------ES-YLMTLMRRFMMRIADKIAE---- 276 (394)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHhh-------cCC----------Cc-eEEEeHHHHHHHHHHHHHH----
Confidence 899999999995 99999999886543321 111 11 1234555666666665554
Q ss_pred cccCCCCeEEEcCCch-----hhhhccccccc-CCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccCCCCCC
Q 007749 503 VHNKPGFYLVLGSSNV-----DEGLRGYLTKY-DCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAE 574 (591)
Q Consensus 503 ~~~~~g~~lvl~t~n~-----sE~~~G~~t~~-gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~psae 574 (591)
+.| ..+|.||+- |+...|+.... +.....+.||.+++|+||+++ ++++|.. .++.+|+.+|
T Consensus 277 ---~~g-~~~IvtG~~~~d~~sqt~~~l~~i~~~~~~~V~rPLig~~K~EI~~l----Ar~iG~~---~~s~~p~~~c 343 (394)
T PRK01565 277 ---KRG-ALAIVTGESLGQVASQTLESMYAINAVTNLPVLRPLIGMDKEEIIEI----AKEIGTY---DISILPYEDC 343 (394)
T ss_pred ---HcC-CCEEEEccccccccHHHHHHHHHHhhccCcEEEECCCCCCHHHHHHH----HHHhCCH---HHhcCCCcCe
Confidence 446 366666654 44445554331 223457999999999999999 7778852 3677888867
No 75
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.22 E-value=4.1e-11 Score=118.03 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=98.7
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++|++|||+||+++++++. +. + + .|+++++.+...+..++
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~-------~~---------------~-~---------------~v~alt~dygq~~~~El 43 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQAL-------QQ---------------Y-D---------------EVHCVTFDYGQRHRAEI 43 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHH-------hc---------------C-C---------------eEEEEEEEeCCCCHHHH
Confidence 579999999999999887761 11 1 1 48999999887778899
Q ss_pred HHHHHHHHHhCCc-eEEEecHHHHHHH-HHHhhhhhCCCCCcccCCCCCCCchhhhhhhh---hhcHHHHHHHHccCccc
Q 007749 429 MLAKKLADEIGSW-HLDVSIDTVVSAF-LSLFQTLTGKRPCYKVDGGSNVENLGLQNIQA---RIRMVLAFMLASLLPWV 503 (591)
Q Consensus 429 ~~A~~la~~lG~~-~~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qa---R~R~~~l~~~a~~~~~~ 503 (591)
+.|+++|+.+|++ |++|+++.+. .+ .+.+.+..-..|.. +...+|+.. ..|..++..+|..+ +.
T Consensus 44 ~~a~~ia~~~gi~~h~vid~~~l~-~l~~s~Lt~~~~~~p~~---------~~~~~~~~~~~vP~RN~lflslAa~~-A~ 112 (231)
T PRK11106 44 DVARELALKLGARAHKVLDVTLLN-ELAVSSLTRDSIPVPDY---------EPEADGLPNTFVPGRNILFLTLAAIY-AY 112 (231)
T ss_pred HHHHHHHHHcCCCeEEEEeccccc-cccccccccccccCCcc---------ccccCCCCCEEEecHHHHHHHHHHHH-HH
Confidence 9999999999996 9999997532 11 01111100001110 000123333 35777777666532 23
Q ss_pred ccCCCCeEEEcCC--chhhhhcc-------------cccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcC-Ccc
Q 007749 504 HNKPGFYLVLGSS--NVDEGLRG-------------YLTKYDCSSADINPIGSISKQDLRTFLRWAATHLG-YSS 562 (591)
Q Consensus 504 ~~~~g~~lvl~t~--n~sE~~~G-------------~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~-~~i 562 (591)
+...+ .+++|+. |.+...-| +.+. ......+|+.+++|.||+++ ++++| +|.
T Consensus 113 ~~g~~-~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~~~~--~~i~I~aPl~~lsK~eI~~l----~~~lg~v~~ 180 (231)
T PRK11106 113 QVKAE-AVITGVCETDFSGYPDCRDEFVKALNHAVSLGMA--KDIRFETPLMWLNKAETWAL----ADYYGQLDL 180 (231)
T ss_pred HcCCC-EEEEeeccCcCCCCCCCCHHHHHHHHHHHHhccC--CCcEEEecCCCCCHHHHHHH----HHHcCCccc
Confidence 33333 4777773 22211111 1121 12568999999999999999 88888 763
No 76
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.16 E-value=6.6e-10 Score=106.96 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=96.3
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCC--CHhh
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS--SQET 427 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~s--s~~t 427 (591)
+++|++|||.||++++.++. +..+ +.+. .+.++++..... ++.+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~-------~~~~-----------~~~~----------------~v~~v~vd~g~~~~~~~~ 46 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLL-------KLQP-----------KLKI----------------RLIAAHVDHGLRPESDEE 46 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHHH-----------HcCC----------------CEEEEEeCCCCChhHHHH
Confidence 48999999999999888873 2210 0121 378899876543 3567
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCC
Q 007749 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~ 507 (591)
.+.++++|+.+|++++.++++.... ... .....++...++|+..++.+|.. .
T Consensus 47 ~~~~~~~~~~~gi~~~~~~~~~~~~------~~~---------------~~~~~~~~~r~~R~~~l~~~a~~-------~ 98 (189)
T TIGR02432 47 AEFVQQFCKKLNIPLEIKKVDVKAL------AKG---------------KKKNLEEAAREARYDFFEEIAKK-------H 98 (189)
T ss_pred HHHHHHHHHHcCCCEEEEEecchhh------ccc---------------cCCCHHHHHHHHHHHHHHHHHHH-------c
Confidence 8999999999999999999853211 000 00113455667888777766653 3
Q ss_pred CCeEEEcCCc-hhhhh--------ccc-----ccc-----cCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCcccccccc
Q 007749 508 GFYLVLGSSN-VDEGL--------RGY-----LTK-----YDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEA 568 (591)
Q Consensus 508 g~~lvl~t~n-~sE~~--------~G~-----~t~-----~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~ 568 (591)
|. -++.||+ .++.+ .|. ..+ ++.....+.||.+++|.||+++ ++.+++| +++
T Consensus 99 g~-~~i~~Gh~~~D~~e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~~~k~ei~~~----~~~~~lp----~~~ 169 (189)
T TIGR02432 99 GA-DYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLGISKSEIEEY----LKENGLP----WFE 169 (189)
T ss_pred CC-CEEEEcCccHHHHHHHHHHHHcCCCcccccCCccccccCCCCEEECCCCCCCHHHHHHH----HHHcCCC----eee
Confidence 53 3333333 44322 222 111 1113347999999999999999 7778888 666
Q ss_pred CCCC
Q 007749 569 APPT 572 (591)
Q Consensus 569 ~~ps 572 (591)
.+..
T Consensus 170 ~~~~ 173 (189)
T TIGR02432 170 DETN 173 (189)
T ss_pred CCCC
Confidence 6543
No 77
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.15 E-value=4.7e-10 Score=107.36 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=95.4
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC--CCHhh
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQET 427 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~--ss~~t 427 (591)
+++|++|||+||++++.++. +... +.+.. ..++++++.... .++.+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~-------~~~~-----------~~~~~--------------~~~~~~~~d~~~~~~~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLK-------KLQR-----------RYPYG--------------FELEALTVDEGIPGYRDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHHh-----------hcCCC--------------eEEEEEEEECCCCCCcHHH
Confidence 48999999999999888773 2210 00000 147888887543 45678
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCC
Q 007749 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~ 507 (591)
.+.++++|+.+|+++..+++++.+ ....... .+ .....++...|.|+..++.+|.. .
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~-----~~----------~~~~~~~~c~~~r~~~l~~~a~~-------~ 105 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEY-TDDIEVK-----KR----------GGKSPCSLCGVLRRGLLNKIAKE-------L 105 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhc-chhhhhh-----cc----------CCCCCCCccHHHHHHHHHHHHHH-------c
Confidence 899999999999999999997544 1100000 01 11123456667788787866653 3
Q ss_pred CCeEEEcCCc-hhhhhc--------cc-----c-----cccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCc
Q 007749 508 GFYLVLGSSN-VDEGLR--------GY-----L-----TKYDCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (591)
Q Consensus 508 g~~lvl~t~n-~sE~~~--------G~-----~-----t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~ 561 (591)
|. -++.||+ .++.+- |. . .........+.||.+++|.||+++ ++.+|+|
T Consensus 106 g~-~~l~~Gh~~dD~~et~l~~~~~g~~~~~~~~~~~~~~~~~~~~iirPL~~~~k~eI~~~----~~~~~l~ 173 (185)
T cd01993 106 GA-DKLATGHNLDDEAETLLMNLLRGGILRLMRPGPILYLDEGDVTRIRPLVYVREKEIVLY----AELNGLP 173 (185)
T ss_pred CC-CEEEEcCChHHHHHHHHHHHHhcCHHHHcCCCCccccCCCCceEEeecccCCHHHHHHH----HHHcCCC
Confidence 53 3444444 444321 21 1 112233467899999999999999 6667887
No 78
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.13 E-value=2.3e-10 Score=110.12 Aligned_cols=162 Identities=19% Similarity=0.170 Sum_probs=103.4
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhh
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t 427 (591)
.++.+|-||||+||+++|+.+. +. +. .|+++++........+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~-------~~---------------~~----------------ev~alsfdYGQrh~~E 43 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAK-------KE---------------GY----------------EVHALTFDYGQRHRKE 43 (222)
T ss_pred CceEEEEccCChhHHHHHHHHH-------hc---------------CC----------------EEEEEEeeCCCCcHHH
Confidence 3678999999999999887762 22 22 5999999988888999
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHH-HHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccC
Q 007749 428 RMLAKKLADEIGSWHLDVSIDTVVSAF-LSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~ 506 (591)
.+.|+++|+.||++|++||++-+-+ + .+.+.+--...|+.. . .....-|.-...|+.+++.+|..+ +.++.
T Consensus 44 le~A~~iak~lgv~~~iid~~~~~~-~~~saLtd~~~~vp~~~-----~-~~~~~p~t~VP~RN~iflsiA~~~-Ae~~g 115 (222)
T COG0603 44 LEAAKELAKKLGVPHHIIDVDLLGE-IGGSALTDDSIDVPKYE-----F-AEEEIPATFVPARNLIFLSIAAAY-AEALG 115 (222)
T ss_pred HHHHHHHHHHcCCCeEEechhHHhh-cCCCcCcCCCccccccc-----c-ccccCcceEeccccHHHHHHHHHH-HHHcC
Confidence 9999999999999999999975432 2 011111000112100 0 001112333367888888888755 44443
Q ss_pred CCCeEEEcCC---------chhh------hhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCc
Q 007749 507 PGFYLVLGSS---------NVDE------GLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (591)
Q Consensus 507 ~g~~lvl~t~---------n~sE------~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~ 561 (591)
.. .+++|-. ++.| .++-+.|..|-.. ..+||..++|.++.++ +.++|.|
T Consensus 116 ~~-~I~~Gv~~~D~sgYPDcrpefi~a~~~~~~l~~~~~~~~-i~aPl~~l~Ka~iv~l----~~elg~~ 179 (222)
T COG0603 116 AD-AIIIGVNEEDFSGYPDCRPEFIEALNEALNLGTEKGVRI-IHAPLMELTKAEIVKL----ADELGVP 179 (222)
T ss_pred CC-eEEEEecccccCCCCCCCHHHHHHHHHHHHhhccCCccE-EeCCeeeccHHHHHHH----HHHhCCc
Confidence 33 3666642 2222 2233344443322 5899999999999999 7777754
No 79
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.13 E-value=5.4e-10 Score=118.00 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=94.4
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhh
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t 427 (591)
.++++|++|||+||++++.++ .+. +|. .|+++++.+... .+
T Consensus 2 ~~kVvva~SGGlDSsvla~~l-------~e~--------------lG~----------------eViavt~d~Gq~--~d 42 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWL-------KET--------------YGC----------------EVIAFTADVGQG--EE 42 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHH-------HHh--------------hCC----------------eEEEEEEecCCH--HH
Confidence 468999999999999988776 232 232 489999987654 68
Q ss_pred HHHHHHHHHHhCC-ceEEEecHHHHH-HHH-HHhhh---hhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCc
Q 007749 428 RMLAKKLADEIGS-WHLDVSIDTVVS-AFL-SLFQT---LTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLP 501 (591)
Q Consensus 428 ~~~A~~la~~lG~-~~~~i~i~~~~~-~~~-~~~~~---~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~ 501 (591)
.++|+++|+.+|+ +|+++|+.+.+. .+. ..+.. -.+..| ..++++|..- ...+.
T Consensus 43 le~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~~y~g~yp----------l~~~lcr~~i---~~~l~------- 102 (399)
T PRK00509 43 LEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANALYEGKYP----------LGTALARPLI---AKKLV------- 102 (399)
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhChHhcCcCC----------CchHHHHHHH---HHHHH-------
Confidence 8999999999998 578889986553 222 22221 012333 2233333221 11222
Q ss_pred ccccCCCCeEEE-cC----CchhhhhcccccccCCCCCCCcCCCCC---cHHHHHHHHHHHHHhcCCccc
Q 007749 502 WVHNKPGFYLVL-GS----SNVDEGLRGYLTKYDCSSADINPIGSI---SKQDLRTFLRWAATHLGYSSL 563 (591)
Q Consensus 502 ~~~~~~g~~lvl-~t----~n~sE~~~G~~t~~gd~~~~~~Pl~~l---~K~~v~~l~~~~~~~~~~~i~ 563 (591)
+.+.+.|...+. |+ .+..+...|+.... ...+.++|+.++ +|.++|++ ++++|+|++
T Consensus 103 ~~A~~~G~~~IA~G~t~kGnDq~rf~~g~~al~-pel~VisPlre~~~~tK~eir~~----A~~~Gipv~ 167 (399)
T PRK00509 103 EIARKEGADAVAHGCTGKGNDQVRFELGIAALA-PDLKVIAPWREWDLKSREELIAY----AEEHGIPIP 167 (399)
T ss_pred HHHHHcCCCEEEeCCCcCCCCHHHHHHHHHHhC-CCCeeecchhhcCCCCHHHHHHH----HHHcCCCCC
Confidence 344455643333 33 12234444544443 234799999876 99999999 888898853
No 80
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.08 E-value=4e-10 Score=109.67 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=96.4
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHHH
Q 007749 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (591)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~ 430 (591)
++|++|||+||+++++++. + .+. .+++++++.......+.+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~-------~---------------~g~----------------~v~~~~~~~~~~~~~e~~~ 42 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAK-------D---------------EGY----------------EVHAITFDYGQRHSRELES 42 (201)
T ss_pred CEEEeccHHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEECCCCCHHHHHH
Confidence 4799999999999887762 1 121 4889999876666778899
Q ss_pred HHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhh---hh----hhcHHHHHHHHccCccc
Q 007749 431 AKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNI---QA----RIRMVLAFMLASLLPWV 503 (591)
Q Consensus 431 A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~---qa----R~R~~~l~~~a~~~~~~ 503 (591)
|+++|+.+|++|++++++.+.......+ .+..+. .. ...|. +. ..|..+++.+|. .+
T Consensus 43 a~~~a~~lgi~~~~~~~~~~~~~~~~~~---~~~~~~---------~~-~~~~~~~~~~~~~~~~r~~~~~~~a~---~~ 106 (201)
T TIGR00364 43 ARKIAEALGIEHHVIDLSLLKQLGGSAL---TDESEI---------PP-QKSNEEDTLPNTFVPGRNAIFLSIAA---SY 106 (201)
T ss_pred HHHHHHHhCCCeEEEechhhcccccccc---cCCCCC---------CC-cCccccCCCCCeeecCCcHHHHHHHH---HH
Confidence 9999999999999999975321000011 111110 00 01121 11 245545444443 33
Q ss_pred ccCCCC-eEEEcCCchhhhh------ccc----ccc--cC--CCCCCCcCCCCCcHHHHHHHHHHHHHhcCCcccccccc
Q 007749 504 HNKPGF-YLVLGSSNVDEGL------RGY----LTK--YD--CSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEA 568 (591)
Q Consensus 504 ~~~~g~-~lvl~t~n~sE~~------~G~----~t~--~g--d~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~ 568 (591)
|.+.|. .+++|. |.++.. .+| .+. .+ -....+.|+.+++|.||+++ ++++|.- ++..
T Consensus 107 A~~~g~~~v~~G~-~~~d~~~~~d~~~~f~~~~~~~~~~~~~~~~~i~~Pl~~~~K~eI~~l----a~~~g~~---~~~~ 178 (201)
T TIGR00364 107 AEALGAEAVITGV-CETDFSGYPDCRDEFVKAFNHALNLGMLTPVKIRAPLMDLTKAEIVQL----ADELGVL---DLVI 178 (201)
T ss_pred HHHCCCCEEEEEe-ccCcCCCCCCCcHHHHHHHHHHHHhhcCCCeEEEECCcCCCHHHHHHH----HHHcCCc---cccH
Confidence 434442 355655 333321 111 010 01 11237999999999999999 7778821 1224
Q ss_pred CCCCCCccc
Q 007749 569 APPTAELEP 577 (591)
Q Consensus 569 ~~psaeL~p 577 (591)
++...|+.+
T Consensus 179 ~~t~sC~~~ 187 (201)
T TIGR00364 179 KLTYSCYAG 187 (201)
T ss_pred hhCCcCCCc
Confidence 677788886
No 81
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.07 E-value=1.2e-09 Score=115.04 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=97.3
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++|++|||+|||+++.++ ++ .|. .|+|+++.+...+..+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l--------~e--------------~G~----------------~Viavt~d~gq~~~~El 44 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYL--------QE--------------RGY----------------AVHTVFADTGGVDAEER 44 (400)
T ss_pred CcEEEEEcCChHHHHHHHHH--------HH--------------cCC----------------cEEEEEEEeCCCCHHHH
Confidence 68999999999999988776 22 232 48999999877667899
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHHHH-HHHHhhh----hhCCCCCcccCCCCCCCchhhhhhhhhhcH-HHHHHHHccCc
Q 007749 429 MLAKKLADEIGS-WHLDVSIDTVVSA-FLSLFQT----LTGKRPCYKVDGGSNVENLGLQNIQARIRM-VLAFMLASLLP 501 (591)
Q Consensus 429 ~~A~~la~~lG~-~~~~i~i~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~-~~l~~~a~~~~ 501 (591)
++|+++|+.+|+ +|+++|+++.+.. +...+-+ .-|..|. .++ +|+-. -.+.
T Consensus 45 ~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~y~G~yPl----------~~~-----nR~~~~~~l~------- 102 (400)
T PRK04527 45 DFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEGYQGQYPL----------LVS-----DRYLIVDAAL------- 102 (400)
T ss_pred HHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchhhcCCCCC----------ccc-----cHHHHHHHHH-------
Confidence 999999999999 5999999987753 3322211 0133341 111 22211 1222
Q ss_pred ccccCCCCe-EEEcCCch-h---hhhcccccccCCCCCCCcCCC--CCcHHHHHHHHHHHHHhcCCccc
Q 007749 502 WVHNKPGFY-LVLGSSNV-D---EGLRGYLTKYDCSSADINPIG--SISKQDLRTFLRWAATHLGYSSL 563 (591)
Q Consensus 502 ~~~~~~g~~-lvl~t~n~-s---E~~~G~~t~~gd~~~~~~Pl~--~l~K~~v~~l~~~~~~~~~~~i~ 563 (591)
+.+.+.|.. +.-|+.++ + +...|..... ..+.++|+. +++|.++|+-....+++.|+|++
T Consensus 103 e~A~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~--el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 103 KRAEELGTRIIAHGCTGMGNDQVRFDLAVKALG--DYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred HHHHHCCCCEEEecCcCCCCchhhccHHHHHhh--cCCccchHHHhcCcccccHHHHHHHHHHcCCCCC
Confidence 344444532 44555333 2 3444544442 568999995 56677787665544777898854
No 82
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.04 E-value=2.4e-09 Score=113.11 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=90.0
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhh
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t 427 (591)
.++++|++|||+||++++.++ .++ .+.+ .|+++++... .+..+
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL-------~e~--------------~g~~---------------~Viav~vd~g-~~~~e 44 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLL-------KEK--------------YGYD---------------EVITVTVDVG-QPEEE 44 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHH-------HHh--------------cCCC---------------EEEEEEEECC-CChHH
Confidence 368999999999999988776 222 2321 3889999864 33567
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHH-HHH-HHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCccccc
Q 007749 428 RMLAKKLADEIGSWHLDVSIDTVVS-AFL-SLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHN 505 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~ 505 (591)
.+.++++|+.+|++|+++|+.+.+. .+. ..++. ..+. . + -+-.+..+ .++|...+. +.++
T Consensus 45 ~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~---n~~~---~-g-Ypl~~~~c---R~~i~~~l~-------e~A~ 106 (394)
T PRK13820 45 IKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKA---NALY---E-G-YPLGTALA---RPLIAEKIV-------EVAE 106 (394)
T ss_pred HHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHh---Cccc---c-C-CcCcHHHH---HHHHHHHHH-------HHHH
Confidence 8889999999999999999985443 332 22221 0000 0 0 00001111 122333333 3344
Q ss_pred CCCCeEEEcCCc--h--hhh--hcccccccCCCCCCCcCCCC--CcHHHHHHHHHHHHHhcCCcc
Q 007749 506 KPGFYLVLGSSN--V--DEG--LRGYLTKYDCSSADINPIGS--ISKQDLRTFLRWAATHLGYSS 562 (591)
Q Consensus 506 ~~g~~lvl~t~n--~--sE~--~~G~~t~~gd~~~~~~Pl~~--l~K~~v~~l~~~~~~~~~~~i 562 (591)
+.|. -++.+|+ . |.. ..|.... ..++++|+.+ ++|.+++++ +++.|+|+
T Consensus 107 e~G~-~~IA~G~t~~gnDq~rfe~~~~a~---~l~viaP~re~~ltK~ei~~y----a~~~gip~ 163 (394)
T PRK13820 107 KEGA-SAIAHGCTGKGNDQLRFEAVFRAS---DLEVIAPIRELNLTREWEIEY----AKEKGIPV 163 (394)
T ss_pred HcCC-CEEEECCCCCcchHHHHHHhhHhh---cCeeeCchhccCCCHHHHHHH----HHHcCCCC
Confidence 4563 3333322 2 322 2332222 3578999977 899999999 77788874
No 83
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.01 E-value=5.4e-10 Score=108.92 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=87.8
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
|++|.+|||+||+++++++. + .+. .+++++.........+.+
T Consensus 1 Kavvl~SGG~DSt~~l~~~~-------~---------------~~~----------------~v~al~~~YGq~~~~El~ 42 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAK-------K---------------EGY----------------EVYALTFDYGQRHRRELE 42 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHH-------H---------------H-S----------------EEEEEEEESSSTTCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEECCCCCHHHHH
Confidence 57899999999999888762 2 232 589999998777888999
Q ss_pred HHHHHHHHhCC-ceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCCC
Q 007749 430 LAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (591)
Q Consensus 430 ~A~~la~~lG~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g 508 (591)
.|+++|+.+|+ +|++|+++.+.+-..+.+.+-....|.- ....-...+.--..|+.+++.+|..+ +.+...+
T Consensus 43 ~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~~~v~~~------~~~~~~~~~t~vP~RN~l~lsiAa~~-A~~~g~~ 115 (209)
T PF06508_consen 43 AAKKIAKKLGVKEHEVIDLSFLKEIGGSALTDDSIEVPEE------EYSEESIPSTYVPFRNGLFLSIAASY-AESLGAE 115 (209)
T ss_dssp HHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHHTT------------------------TTHHHHHHHHHHHH-HHHHT-S
T ss_pred HHHHHHHHhCCCCCEEeeHHHHHhhCCCcccCCCcCCccc------ccccCCCCceEEecCcHHHHHHHHHH-HHHCCCC
Confidence 99999999999 9999999865432222222210001100 00001122333367888888888755 4444444
Q ss_pred CeEEEcCCchhhhhccccc--------------c-cCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCc
Q 007749 509 FYLVLGSSNVDEGLRGYLT--------------K-YDCSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (591)
Q Consensus 509 ~~lvl~t~n~sE~~~G~~t--------------~-~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~ 561 (591)
.+++|.. .++. .||.. . .+......+|+.+++|.||.++ +.++|.|
T Consensus 116 -~i~~G~~-~~D~-~~ypDc~~~F~~~~~~~~~~~~~~~v~i~~P~~~~tK~eiv~~----~~~lg~~ 176 (209)
T PF06508_consen 116 -AIYIGVN-AEDA-SGYPDCRPEFIDAMNRLLNLGEGGPVRIETPLIDLTKAEIVKL----GVELGVP 176 (209)
T ss_dssp -EEEE----S-ST-T--GGGSHHHHHHHHHHHHHHHTS--EEE-TTTT--HHHHHHH----HHHTTHH
T ss_pred -EEEEEEC-cCcc-CCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCHHHHHHH----HHHcCCC
Confidence 4777763 2221 12211 0 1234457899999999999999 7677744
No 84
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.00 E-value=1.6e-09 Score=114.62 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=91.9
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++|++|||+||++++.++. +. .+. .|+++++.... ...+.
T Consensus 6 ~kVvva~SGGlDSsvla~~L~-------e~--------------~G~----------------eViav~id~Gq-~~~el 47 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLR-------EN--------------YGC----------------EVVCFTADVGQ-GIEEL 47 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHH-------Hh--------------hCC----------------eEEEEEEECCC-ChHHH
Confidence 589999999999999887762 22 232 48999998764 44688
Q ss_pred HHHHHHHHHhCCce-EEEecHHHHHHHHHHhh-hhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccC
Q 007749 429 MLAKKLADEIGSWH-LDVSIDTVVSAFLSLFQ-TLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (591)
Q Consensus 429 ~~A~~la~~lG~~~-~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~ 506 (591)
+.|+++|+.+|+++ +++|+.+.|. ..+. +..-..+. .+-++-.-.+=.|-.+ +..+.+.+++
T Consensus 48 ~~a~~~A~~lGi~~~~v~dl~~ef~---~~~i~p~i~~Na~---------ye~~Y~~~tsl~Rp~i----~~~lv~~A~~ 111 (404)
T PLN00200 48 EGLEAKAKASGAKQLVVKDLREEFV---RDYIFPCLRANAI---------YEGKYLLGTSMARPLI----AKAMVDIAKE 111 (404)
T ss_pred HHHHHHHHHcCCCEEEEEeCHHHHH---HhhcCHHHHcCCc---------ccceeccccchhhHHH----HHHHHHHHHH
Confidence 99999999999985 7778865442 1111 10000000 0000111111112111 1111244455
Q ss_pred CCCeEEE-cC-C---chhhhhcccccccCCCCCCCcCCCCC---cHHHHHHHHHHHHHhcCCccccccccCCCC
Q 007749 507 PGFYLVL-GS-S---NVDEGLRGYLTKYDCSSADINPIGSI---SKQDLRTFLRWAATHLGYSSLAEIEAAPPT 572 (591)
Q Consensus 507 ~g~~lvl-~t-~---n~sE~~~G~~t~~gd~~~~~~Pl~~l---~K~~v~~l~~~~~~~~~~~i~~~i~~~~ps 572 (591)
.|...|. |+ + +......|+.... -..+.++|+.+. +|++++++ ++++|+| ++++|.+
T Consensus 112 ~G~~~VahG~tgkGnDq~rf~~~~~al~-pel~ViaPlre~~~~~r~e~~~~----A~~~Gip----v~~~~~~ 176 (404)
T PLN00200 112 VGADAVAHGATGKGNDQVRFELTFFALN-PELKVVAPWREWDIKGREDLIEY----AKKHNIP----VPVTKKS 176 (404)
T ss_pred cCCCEEEeCCcCCCCcHHHHHHHHHHhC-CCCeeeCchhhcCCCCHHHHHHH----HHHcCCC----CCCCCCC
Confidence 5643333 22 1 1223444444442 233799999765 39999999 8888998 6655543
No 85
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.91 E-value=1.6e-08 Score=96.94 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=89.1
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCC--Hhh
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSS--QET 427 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss--~~t 427 (591)
+++|++|||+||++++.++. +... ..+. .+.++++...... .++
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~-------~~~~-----------~~~~----------------~v~~v~id~~~~~~~~~~ 46 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLS-------ELKP-----------RLGL----------------RLVAVHVDHGLRPESDEE 46 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHH-------HHHH-----------HcCC----------------cEEEEEecCCCCchHHHH
Confidence 58999999999999888772 2210 0011 4889999865443 478
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCC
Q 007749 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~ 507 (591)
.+.++++|+.+|++++++... ... +.. .+ .+....++|...+..+|. +.
T Consensus 47 ~~~~~~~~~~~~i~~~~~~~~---------~~~--~~~--------~~-----~~~~~r~~r~~~l~~~a~-------~~ 95 (185)
T cd01992 47 AAFVADLCAKLGIPLYILVVA---------LAP--KPG--------GN-----LEAAAREARYDFFAEIAK-------EH 95 (185)
T ss_pred HHHHHHHHHHcCCcEEEEeec---------ccc--CCC--------CC-----HHHHHHHHHHHHHHHHHH-------Hc
Confidence 999999999999999988110 000 000 01 112223445455554443 34
Q ss_pred CCeEEEcCCc-hhhhhc--------c--ccccc-------CCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccC
Q 007749 508 GFYLVLGSSN-VDEGLR--------G--YLTKY-------DCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAA 569 (591)
Q Consensus 508 g~~lvl~t~n-~sE~~~--------G--~~t~~-------gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~ 569 (591)
|. -.+.||+ .++.+- | ...+. ......+.||.+++|.||+++ ++++|+| ++..
T Consensus 96 ~~-~~i~~Gh~~dD~~e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~~k~eI~~~----~~~~~l~----~~~~ 166 (185)
T cd01992 96 GA-DVLLTAHHADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGITRAEIEAY----LRENGLP----WWED 166 (185)
T ss_pred CC-CEEEEcCCcHHHHHHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCCCHHHHHHH----HHHcCCC----eEEC
Confidence 53 3333333 333211 1 11111 123347899999999999999 7778998 6655
Q ss_pred CCCC
Q 007749 570 PPTA 573 (591)
Q Consensus 570 ~psa 573 (591)
+.+.
T Consensus 167 ~~~~ 170 (185)
T cd01992 167 PSNE 170 (185)
T ss_pred CCCC
Confidence 5443
No 86
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.88 E-value=2e-08 Score=93.35 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=76.1
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
.++|++|||+||+++++++. +. +.. .+.+++++....++++.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~~-------~~---------------~~~---------------~v~~v~~~~g~~~~~~~~ 45 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLK-------EK---------------YGL---------------NPLAVTVDNGFNSEEAVK 45 (154)
T ss_pred CEEEECCCchhHHHHHHHHH-------HH---------------hCC---------------ceEEEEeCCCCCCHHHHH
Confidence 47999999999999888762 22 111 377888887666777889
Q ss_pred HHHHHHHH-hCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCCC
Q 007749 430 LAKKLADE-IGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (591)
Q Consensus 430 ~A~~la~~-lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g 508 (591)
.++++|+. +++.+..+++++..+.....+. +... .. ++...|.|...+..+|. +.|
T Consensus 46 ~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~----------~p---~~~~~~~~~~~~~~~A~-------~~g 102 (154)
T cd01996 46 NIKNLIKKGLDLDHLVINPEEMKDLQLARFK---AKVG----------DP---CWPCDTAIFTSLYKVAL-------KFG 102 (154)
T ss_pred HHHHHHHhCCCeEEEecCHHHHHHHHHHHHh---cccC----------CC---ChhhhHHHHHHHHHHHH-------HhC
Confidence 99999999 4444455666554443333322 1111 11 12334555555554443 446
Q ss_pred CeEEEcCCchhhhhccccccc
Q 007749 509 FYLVLGSSNVDEGLRGYLTKY 529 (591)
Q Consensus 509 ~~lvl~t~n~sE~~~G~~t~~ 529 (591)
...++...|.+|...||.++.
T Consensus 103 ~~~il~G~~~de~~~Gy~~~~ 123 (154)
T cd01996 103 IPLIITGENPAQEFGGIREEE 123 (154)
T ss_pred cCEEEeCcCHHHhcccccccc
Confidence 447787888999999988663
No 87
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.86 E-value=2.1e-08 Score=106.56 Aligned_cols=155 Identities=22% Similarity=0.271 Sum_probs=92.3
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCC-CCCHhh
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQET 427 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~-~ss~~t 427 (591)
+++++++|||+||++++.++. + .|. .++++++.+. .+++.+
T Consensus 173 ~kvlvllSGGiDS~vaa~ll~-------k---------------rG~----------------~V~av~~~~~~~~~~~~ 214 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMMM-------K---------------RGC----------------RVVAVHFFNEPAASEKA 214 (371)
T ss_pred CeEEEEecCCchHHHHHHHHH-------H---------------cCC----------------eEEEEEEeCCCCccHHH
Confidence 579999999999999887762 1 232 4889999865 355678
Q ss_pred HHHHHHHHHHh---C--CceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcc
Q 007749 428 RMLAKKLADEI---G--SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (591)
Q Consensus 428 ~~~A~~la~~l---G--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~ 502 (591)
.+.|+.+|+.+ | +++..+|+.++.+++... .+ ..+. .+- +|. ++|.+|. .
T Consensus 215 ~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~~~-------~~---------~~~~---cv~--cRr-~m~~~a~---~ 269 (371)
T TIGR00342 215 REKVERLANSLNETGGSVKLYVFDFTDVQEEIIHI-------IP---------EGYT---CVL--CRR-MMYKAAS---K 269 (371)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHHhc-------CC---------CCce---eHh--HHH-HHHHHHH---H
Confidence 88999999988 3 478889988765433211 01 0111 111 222 2233443 3
Q ss_pred cccCCCCe-EEEcCCchhhhh----cccccc-cCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccCCCCCC
Q 007749 503 VHNKPGFY-LVLGSSNVDEGL----RGYLTK-YDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAE 574 (591)
Q Consensus 503 ~~~~~g~~-lvl~t~n~sE~~----~G~~t~-~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~psae 574 (591)
+|.+.|.. ++.|. |.++.+ .+..+. .+.....+.||.+++|.||+++ ++++|.. ++..+|+..|
T Consensus 270 ~A~~~g~~~I~tG~-~l~d~asqtl~nl~~i~~~~~~~I~rPLi~~~K~EIi~~----a~~iG~~---~~s~~~~~~c 339 (371)
T TIGR00342 270 VAEKEGCLAIVTGE-SLGQVASQTLENLRVIQAVSNTPILRPLIGMDKEEIIEL----AKEIGTY---EISIEPHEDC 339 (371)
T ss_pred HHHHcCCCEEEEcc-ChHhhhccHHHHHHHHhccCCCCEEeCCCCCCHHHHHHH----HHHhCCc---ceeecCCCce
Confidence 34444532 33333 333322 221121 1223457899999999999999 7777742 3444555544
No 88
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.84 E-value=6.9e-09 Score=107.10 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=113.3
Q ss_pred HHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 007749 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (591)
Q Consensus 337 ~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 416 (591)
.++++++ |..++++++|||+||+++++|+ .+|+ +.+ +++++
T Consensus 222 ~~i~k~v---G~~~Vl~~vSGgvdStV~a~Ll-------~~al--------------g~~---------------R~~ai 262 (552)
T KOG1622|consen 222 NEIRKWV---GDYKVLVAVSGGVDSTVCAALL-------RRAL--------------GPD---------------RVHAI 262 (552)
T ss_pred HHHHHHh---cccceEEEecCCchHHHHHHHH-------HHhh--------------CCC---------------ceEEE
Confidence 4555555 4689999999999999999988 4553 433 58999
Q ss_pred ecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcH-----H
Q 007749 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRM-----V 491 (591)
Q Consensus 417 ~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~-----~ 491 (591)
..........+-+..++--..||++...+|-+ ..|++.++.++..+.+++.+|.++.. + +.-.+.++-- .
T Consensus 263 ~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as---~~f~s~L~~~~dPE~KRkiIG~tfik-v-~~~~~~~l~~k~~~~~ 337 (552)
T KOG1622|consen 263 HVDNGFMRKKEAEQVEKTLVYLGIPITVVDAS---ETFLSKLKGVTDPEEKRKIIGRTFIK-V-FDPVASELNKKHGEKE 337 (552)
T ss_pred EecccchhhhHHHHHHHHHHHcCCceEEeech---HHHHHhhcccCCHHHhceecccceee-e-CcHHHHHhhhccCccc
Confidence 88866665555555555334499999999986 46677888888888888888876543 1 1111111100 0
Q ss_pred HHHHHHccCcccccCCCCeEEEcCCchh----hhhccccccc-CCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCcccccc
Q 007749 492 LAFMLASLLPWVHNKPGFYLVLGSSNVD----EGLRGYLTKY-DCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEI 566 (591)
Q Consensus 492 ~l~~~a~~~~~~~~~~g~~lvl~t~n~s----E~~~G~~t~~-gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i 566 (591)
-..+.+.+.||+-. . ..+.|+++.. ....|..... --....+.|+.++.|+|||+| .+.+|+| +.+
T Consensus 338 ~flaQgtL~Pd~ie--S-~s~~g~~~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEvr~l----gk~lGlp--~~L 408 (552)
T KOG1622|consen 338 SFLAQGTLRPDLIE--S-ASVYGSGHAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEVREL----GKDLGLP--ESL 408 (552)
T ss_pred eeeecccccchhhh--h-ccccCCchhhhhhcccccchHHHHHHHhcccCchhHHHHHHHHHHh----hhhcCCc--hhh
Confidence 00111112222211 1 1333443211 1111111110 012368999999999999999 9989987 888
Q ss_pred ccCCCCCC
Q 007749 567 EAAPPTAE 574 (591)
Q Consensus 567 ~~~~psae 574 (591)
..+.|.|+
T Consensus 409 v~rhPfpG 416 (552)
T KOG1622|consen 409 VPRHPFPG 416 (552)
T ss_pred hccCCCCC
Confidence 88888873
No 89
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.83 E-value=3.1e-08 Score=104.80 Aligned_cols=151 Identities=18% Similarity=0.144 Sum_probs=87.9
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHHH
Q 007749 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (591)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~ 430 (591)
++|++|||+||++++.++. +. +.. .|+++++...... ...+.
T Consensus 1 Vvva~SGGlDSsvll~~l~-------e~---------------~~~---------------eV~av~~d~Gq~~-~~~e~ 42 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLK-------EK---------------GGY---------------EVIAVTADVGQPE-EEIEA 42 (385)
T ss_pred CEEEecCCHHHHHHHHHHH-------Hh---------------CCC---------------eEEEEEEECCCcc-hhHHH
Confidence 5899999999999887762 22 111 4889999876533 33488
Q ss_pred HHHHHHHhCCc-eEEEecHHHHHH--HHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCC
Q 007749 431 AKKLADEIGSW-HLDVSIDTVVSA--FLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (591)
Q Consensus 431 A~~la~~lG~~-~~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~ 507 (591)
|+++|+.+|++ |+++|+.+.+.. +...+.. ..+ ....+-+.-+-+|..+.-. +...+++.
T Consensus 43 a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~a---n~~----------~~g~y~l~t~l~R~~i~~~----l~~~A~~~ 105 (385)
T cd01999 43 IEEKALKLGAKKHVVVDLREEFVEDYIFPAIQA---NAL----------YEGTYPLGTALARPLIAKA----LVEVAKEE 105 (385)
T ss_pred HHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHh---Ccc----------ccCCCcCCcHhHHHHHHHH----HHHHHHHc
Confidence 99999999996 999999875542 2222221 110 0000111111123322111 11344455
Q ss_pred CCe-EEEcCC----chhhhhcccccccCCCCCCCcCCCCC---cHHHHHHHHHHHHHhcCCc
Q 007749 508 GFY-LVLGSS----NVDEGLRGYLTKYDCSSADINPIGSI---SKQDLRTFLRWAATHLGYS 561 (591)
Q Consensus 508 g~~-lvl~t~----n~sE~~~G~~t~~gd~~~~~~Pl~~l---~K~~v~~l~~~~~~~~~~~ 561 (591)
|.. +..|+. |..+...|..... -..+.++|+.++ +|.+++++ ++++|+|
T Consensus 106 Ga~~VA~G~t~~gnDq~rf~~~~~al~-pel~ViaPlre~~~~sr~ev~~~----A~~~Gip 162 (385)
T cd01999 106 GADAVAHGCTGKGNDQVRFELAFYALN-PDLKIIAPWRDWEFLSREEEIEY----AEEHGIP 162 (385)
T ss_pred CCCEEEeCCCCCCCcHHHHHHHHHhhC-CCCEEEcchhhhhcCCHHHHHHH----HHHcCCC
Confidence 632 334332 2233444443332 135689999877 99999999 8888888
No 90
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.81 E-value=5.9e-08 Score=92.41 Aligned_cols=149 Identities=19% Similarity=0.137 Sum_probs=80.3
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHh---
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE--- 426 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~--- 426 (591)
+++|++|||+||+++|.++. + .|. .++++++.....+..
T Consensus 1 ~vlv~~SGG~DS~~la~ll~-------~---------------~g~----------------~v~av~~d~g~~~~~~~~ 42 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLM-------K---------------RGI----------------EVDALHFNSGPFTSEKAR 42 (177)
T ss_pred CEEEEecCChhHHHHHHHHH-------H---------------cCC----------------eEEEEEEeCCCCCchHHH
Confidence 47999999999999888772 2 232 488999986554432
Q ss_pred -hHHHHHHHHHHhCCceE--EEecHHH-HHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcc
Q 007749 427 -TRMLAKKLADEIGSWHL--DVSIDTV-VSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (591)
Q Consensus 427 -t~~~A~~la~~lG~~~~--~i~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~ 502 (591)
....+.+.+..+|.+|. +++.... .+. .+.. +..+ ..+..+|- .+...+..+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~--~~~~----------~~c~~Cr~---~~~~~~~~~------ 98 (177)
T cd01712 43 EKVEDLARKLARYSPGHKLVVIIFTFFVQKE---IYGY--GKEK----------YRCILCKR---MMYRIAEKL------ 98 (177)
T ss_pred HHHHHHHHHHHHhCCCCceEEEeCcHHHHHH---HHHh--CCCc----------cHhHHHHH---HHHHHHHHH------
Confidence 23444445566777774 5555431 111 1111 2211 11112221 222233333
Q ss_pred cccCCCC-eEEEcC--Cchhh-hhcccccc-cCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccC
Q 007749 503 VHNKPGF-YLVLGS--SNVDE-GLRGYLTK-YDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAA 569 (591)
Q Consensus 503 ~~~~~g~-~lvl~t--~n~sE-~~~G~~t~-~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~ 569 (591)
+.+.|. .++.|+ ++..+ ...+.... .......+.|+.+++|.||+++ ++++|++ .|++
T Consensus 99 -A~~~g~~~I~~G~~~~D~~~~~~~~l~~~~~~~~~~i~rPl~~~~K~eI~~~----a~~~gl~----~~~~ 161 (177)
T cd01712 99 -AEELGADAIVTGESLGQVASQTLENLLVISSGTDLPILRPLIGFDKEEIIGI----ARRIGTY----DISI 161 (177)
T ss_pred -HHHcCCCEEEEccCcccchHHHHHhhhhcccCCCCeEECCCCCCCHHHHHHH----HHHcCCc----ceec
Confidence 333453 244443 12222 22332222 1123567899999999999999 7778888 6666
No 91
>PRK14561 hypothetical protein; Provisional
Probab=98.79 E-value=4.6e-08 Score=94.46 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=75.9
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
+++|++|||+||+++++++. . . . .+.++++.... ..+.+
T Consensus 2 kV~ValSGG~DSslll~~l~--------~--------------~-~----------------~v~a~t~~~g~--~~e~~ 40 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLE--------R--------------F-Y----------------DVELVTVNFGV--LDSWK 40 (194)
T ss_pred EEEEEEechHHHHHHHHHHH--------h--------------c-C----------------CeEEEEEecCc--hhHHH
Confidence 58999999999999877652 1 1 0 13344333222 23578
Q ss_pred HHHHHHHHhCCceEEEecHHHHHHHHHHhhhhh-CCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCCC
Q 007749 430 LAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT-GKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPG 508 (591)
Q Consensus 430 ~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g 508 (591)
.|+.+|+.+|++|+++++++-+ ......... ...| .|....+|..++...+ +..+
T Consensus 41 ~a~~~a~~lGi~~~~v~~~~~~--~~~~~~~~~~~~~P---------------~~~~~~l~~~~l~~~a-------~g~~ 96 (194)
T PRK14561 41 HAREAAKALGFPHRVLELDREI--LEKAVDMIIEDGYP---------------NNAIQYVHEHALEALA-------EEYD 96 (194)
T ss_pred HHHHHHHHhCCCEEEEECCHHH--HHHHHHHHHHcCCC---------------CchhHHHHHHHHHHHH-------cCCC
Confidence 9999999999999999997632 111111111 1112 1223344544444333 2223
Q ss_pred CeEEEcCCchhhh-----hcccccccCC-CCCCCcCCCCCcHHHHHHHH
Q 007749 509 FYLVLGSSNVDEG-----LRGYLTKYDC-SSADINPIGSISKQDLRTFL 551 (591)
Q Consensus 509 ~~lvl~t~n~sE~-----~~G~~t~~gd-~~~~~~Pl~~l~K~~v~~l~ 551 (591)
.++.|+ |.|+. ..|.....+. +...+.||.+++|.+|++++
T Consensus 97 -~Ia~G~-n~DD~~et~~r~~~~a~~~~~gi~iirPL~~~~K~eI~~la 143 (194)
T PRK14561 97 -VIADGT-RRDDRVPKLSRSEIQSLEDRKGVQYIRPLLGFGRKTIDRLV 143 (194)
T ss_pred -EEEEEe-cCCCcchhccHHHHhhhhcCCCcEEEeeCCCCCHHHHHHHH
Confidence 355555 44442 1121111110 11248999999999999993
No 92
>PRK08349 hypothetical protein; Validated
Probab=98.77 E-value=1.3e-07 Score=91.66 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=84.8
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
++++++|||+||+++|.++. + .|. .|+++++.. +..+.+
T Consensus 2 ~~vvllSGG~DS~v~~~~l~-------~---------------~g~----------------~v~av~~d~---~~~~~~ 40 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLML-------R---------------RGV----------------EVYPVHFRQ---DEKKEE 40 (198)
T ss_pred cEEEEccCChhHHHHHHHHH-------H---------------cCC----------------eEEEEEEeC---CHHHHH
Confidence 68999999999999887662 1 232 488999875 345566
Q ss_pred HHHHHHHHh----CCce---EEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcc
Q 007749 430 LAKKLADEI----GSWH---LDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (591)
Q Consensus 430 ~A~~la~~l----G~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~ 502 (591)
.++++|+.+ |++| ..+++.+........+... +.. ...+..++ |++..++..+|.
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~----------~~~c~~cr---~~~~~~a~~~A~---- 102 (198)
T PRK08349 41 KVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLREL-KKE----------KWTCIFCK---YTMYRKAERIAH---- 102 (198)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHhh-CCC----------CCchHHHH---HHHHHHHHHHHH----
Confidence 677777666 4776 4566543322222221110 111 11122222 223333333333
Q ss_pred cccCCCC-eEEEcCCchhhhh----cccccccC-CCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccCCCCCCcc
Q 007749 503 VHNKPGF-YLVLGSSNVDEGL----RGYLTKYD-CSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELE 576 (591)
Q Consensus 503 ~~~~~g~-~lvl~t~n~sE~~----~G~~t~~g-d~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~psaeL~ 576 (591)
+.|. .++.| .|.++.+ ....+... .....+.||.+++|.||+++ ++++|.+ .+..+|+..|..
T Consensus 103 ---~~g~~~I~tG-~~~~d~a~~~l~nl~~~~~~~~i~i~rPL~~~~K~eI~~~----a~~~g~~---~~~~~~~~~C~~ 171 (198)
T PRK08349 103 ---EIGASAIITG-DSLGQVASQTLDNLMVISTATDLPVLRPLIGLDKEEIVKI----AKEIGTF---EISIEPEPPCPF 171 (198)
T ss_pred ---HcCCCEEEEe-cCCchHHHHHHHHHhccccccCCeEEcCCCCCCHHHHHHH----HHHcCCh---hhhhCCCCCCcC
Confidence 3342 24444 1333321 11111111 11357899999999999999 7777843 345566666643
No 93
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.73 E-value=1.3e-07 Score=99.41 Aligned_cols=129 Identities=18% Similarity=0.192 Sum_probs=81.7
Q ss_pred HHHHHhCC--CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 007749 341 DYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (591)
Q Consensus 341 d~l~~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m 418 (591)
+.+++.+. -.++||+|||+||+++|.++ ++. +|. ++.++++
T Consensus 50 ~~~k~~~~~~yD~iV~lSGGkDSs~la~ll-------~~~--------------~gl----------------~~l~vt~ 92 (343)
T TIGR03573 50 DKIKKKGGGRYDCIIGVSGGKDSTYQAHVL-------KKK--------------LGL----------------NPLLVTV 92 (343)
T ss_pred HHHHhcCCCCCCEEEECCCCHHHHHHHHHH-------HHH--------------hCC----------------ceEEEEE
Confidence 44444442 35999999999999988666 233 231 3677888
Q ss_pred CCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHc
Q 007749 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLAS 498 (591)
Q Consensus 419 ~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~ 498 (591)
.....++...++++.+|+.+|++|.++.++.- .+...+...+...+ +.+.... +.+...++.+|.
T Consensus 93 ~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~--~~~~l~~~~~~~~~-----------~pc~~c~--~~~~~~l~~~A~ 157 (343)
T TIGR03573 93 DPGWNTELGVKNLNNLIKKLGFDLHTITINPE--TFRKLQRAYFKKVG-----------DPEWPQD--HAIFASVYQVAL 157 (343)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHH--HHHHHHHHHHhccC-----------CCchhhh--hHHHHHHHHHHH
Confidence 76667788888999999999999999887532 12222222111111 1112222 233445554443
Q ss_pred cCcccccCCCCeEEEcCCchhhhhcccccc
Q 007749 499 LLPWVHNKPGFYLVLGSSNVDEGLRGYLTK 528 (591)
Q Consensus 499 ~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~ 528 (591)
++|..+|+...|.+|...||.|.
T Consensus 158 -------~~gi~~Il~G~~~dE~fgGy~~~ 180 (343)
T TIGR03573 158 -------KFNIPLIIWGENIAEEYGGDSEE 180 (343)
T ss_pred -------HhCCCEEEeCCCHHHhcCCcccc
Confidence 44656888889999998888765
No 94
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.68 E-value=7.3e-08 Score=102.28 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=49.8
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
+++|++|||+||++++.++. + .|. .|+++++.... ...+.+
T Consensus 1 kVvla~SGGlDSsvll~~l~-------e---------------~g~----------------~V~av~id~Gq-~~~e~~ 41 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLR-------E---------------KGY----------------EVIAYTADVGQ-PEEDID 41 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHH-------H---------------cCC----------------EEEEEEEecCC-ChHHHH
Confidence 58999999999999877662 1 122 48899998653 367889
Q ss_pred HHHHHHHHhCC-ceEEEecHHHH
Q 007749 430 LAKKLADEIGS-WHLDVSIDTVV 451 (591)
Q Consensus 430 ~A~~la~~lG~-~~~~i~i~~~~ 451 (591)
.++++|+.+|+ +|+++|+.+.+
T Consensus 42 ~a~~~a~~lGi~~~~viD~~~ef 64 (394)
T TIGR00032 42 AIPEKALEYGAENHYTIDAREEF 64 (394)
T ss_pred HHHHHHHHhCCCeEEEEeCHHHH
Confidence 99999999998 79999997433
No 95
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.60 E-value=5.7e-07 Score=84.33 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=53.0
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
.++|++|||.||++++.|+. ++. ... ..+..+++.+....+++.+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~-------~~~--------------~~~--------------~~~~~v~~dtg~~~~~~~~ 45 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLAL-------KAL--------------PEL--------------KPVPVIFLDTGYEFPETYE 45 (173)
T ss_pred CeEEEecCChHHHHHHHHHH-------Hhc--------------ccc--------------cCceEEEeCCCCCCHHHHH
Confidence 47899999999999988873 321 100 0377899998777889999
Q ss_pred HHHHHHHHhCCceEEEecHHHH
Q 007749 430 LAKKLADEIGSWHLDVSIDTVV 451 (591)
Q Consensus 430 ~A~~la~~lG~~~~~i~i~~~~ 451 (591)
.++++++.+|+++..+..+...
T Consensus 46 ~~~~~~~~~g~~~~~~~~~~~~ 67 (173)
T cd01713 46 FVDRVAERYGLPLVVVRPPDSP 67 (173)
T ss_pred HHHHHHHHhCCCeEEECCCccH
Confidence 9999999999999999886544
No 96
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.57 E-value=7.3e-07 Score=94.34 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=86.3
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++++||||+||+++|.++. + .|. .|.++++. +++.+.
T Consensus 181 gkvlvllSGGiDSpVAa~ll~-------k---------------rG~----------------~V~~v~f~---~g~~~~ 219 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMM-------K---------------RGV----------------EVIPVHIY---MGEKTL 219 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHH-------H---------------cCC----------------eEEEEEEE---eCHHHH
Confidence 579999999999999887772 1 243 48888884 457788
Q ss_pred HHHHHHHHHhC-------CceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCc
Q 007749 429 MLAKKLADEIG-------SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLP 501 (591)
Q Consensus 429 ~~A~~la~~lG-------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~ 501 (591)
+.++++|+.|+ ++++.++..+. ..+...+.+.. .. ...+.+++ |.++.++..+
T Consensus 220 e~v~~la~~L~~~~~~~~i~l~~v~~~~~-~~v~~~i~~~~--~~---------~~~C~~Ck---r~m~r~a~~i----- 279 (381)
T PRK08384 220 EKVRKIWNQLKKYHYGGKAELIVVKPQER-ERIIQKLKELK--KE---------NYTCVFCK---FMMVKHADRI----- 279 (381)
T ss_pred HHHHHHHHHhcccccCCcceEEEEChHHH-HHHHHHHHHhc--cC---------CCchHHHH---HHHHHHHHHH-----
Confidence 99999999999 44667776421 12233332210 11 01123332 2333344433
Q ss_pred ccccCCCCeEEEcCCch-----hhhhcc-cccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcC
Q 007749 502 WVHNKPGFYLVLGSSNV-----DEGLRG-YLTKYDCSSADINPIGSISKQDLRTFLRWAATHLG 559 (591)
Q Consensus 502 ~~~~~~g~~lvl~t~n~-----sE~~~G-~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~ 559 (591)
|.+.|. -.+.||+. |..... +.+..+...-.+-||.+++|.||+++ +++.|
T Consensus 280 --A~~~g~-~~IaTGhslgqvaSQtl~Nl~~i~~~~~lpilRPLi~~dK~EIi~~----Ar~iG 336 (381)
T PRK08384 280 --AKEFGA-KGIVMGDSLGQVASQTLENMYIVSQASDLPIYRPLIGMDKEEIVAI----AKTIG 336 (381)
T ss_pred --HHHcCC-CEEEEcccchhHHHHHHHHHHHHhccCCCcEEeeCCCCCHHHHHHH----HHHcC
Confidence 445564 66767663 211111 12222333457999999999999999 66677
No 97
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=98.52 E-value=1.7e-06 Score=87.57 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=86.0
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhh
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t 427 (591)
-++++||+|||.||++++.++.. ++ +..+.+ -.+.+++......+ .+
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~--------l~-----------~~~~~~-------------~~l~av~vd~g~~~-~~ 75 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLN--------LQ-----------KRAPIN-------------FELVAVNLDQKQPG-FP 75 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHH--------HH-----------HhCCCC-------------eEEEEEEecCCCCC-CC
Confidence 36899999999999998877632 11 011100 04788887654332 23
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCC
Q 007749 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~ 507 (591)
.+.++++|+.+|++|++++++.. .... ... +. ....+..-.+.|...++.+|.. .
T Consensus 76 ~~~~~~~~~~lgI~~~v~~~~~~-~~~~---~~~----~~----------~~~~c~~c~~~R~~~l~~~a~~-------~ 130 (258)
T PRK10696 76 EHVLPEYLESLGVPYHIEEQDTY-SIVK---EKI----PE----------GKTTCSLCSRLRRGILYRTARE-------L 130 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEecch-hhhh---hhh----cc----------CCChhHHHHHHHHHHHHHHHHH-------c
Confidence 34678999999999999987531 1110 000 10 0012234445676676665543 3
Q ss_pred CCeEEEcCCchhhhhc--------c--cccccC------CCCCCCcCCCCCcHHHHHHHHHHHHHhcCCc
Q 007749 508 GFYLVLGSSNVDEGLR--------G--YLTKYD------CSSADINPIGSISKQDLRTFLRWAATHLGYS 561 (591)
Q Consensus 508 g~~lvl~t~n~sE~~~--------G--~~t~~g------d~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~ 561 (591)
|...++-..|.++.+- | ..++.. .....+.||..++|.+|+++ ++..++|
T Consensus 131 g~~~Ia~GH~~dD~~Et~l~nl~rg~~l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y----~~~~~lp 196 (258)
T PRK10696 131 GATKIALGHHRDDILETLFLNMFYGGKLKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKF----AEAKEFP 196 (258)
T ss_pred CCCEEEEcCchHHHHHHHHHHHHhCCcccccCCeeecCCCceeEEecCccCCHHHHHHH----HHHcCCC
Confidence 4322222234443221 2 111110 01246899999999999999 7777888
No 98
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.36 E-value=1.5e-06 Score=82.02 Aligned_cols=52 Identities=25% Similarity=0.280 Sum_probs=38.9
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
+++|++|||+||++++.++. + .+. .++++++.....+..+.+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~-------~---------------~~~----------------~v~~~~~~~~~~~~~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAK-------K---------------EGY----------------EVHALSFDYGQRHAKEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEECCCCChhHHH
Confidence 57899999999999877762 1 122 377888875444455668
Q ss_pred HHHHHHHHhC
Q 007749 430 LAKKLADEIG 439 (591)
Q Consensus 430 ~A~~la~~lG 439 (591)
.++++|+.+|
T Consensus 43 ~~~~~~~~~g 52 (169)
T cd01995 43 AAKLIAEKLG 52 (169)
T ss_pred HHHHHHHHHC
Confidence 8999999999
No 99
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=98.35 E-value=3.7e-06 Score=86.94 Aligned_cols=145 Identities=28% Similarity=0.347 Sum_probs=92.2
Q ss_pred HHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 007749 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (591)
Q Consensus 330 e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (591)
.+.+.+...++++|... ..+-+-||||+|||++|+++. +.+++ +.+.+ +.
T Consensus 209 ~~r~~~~~aV~KRLM~d--~p~GvLLSGGLDSSLvAsia~-------R~lk~------~~~~~-~~-------------- 258 (543)
T KOG0571|consen 209 ALRHTLEKAVRKRLMTD--VPFGVLLSGGLDSSLVASIAA-------RELKK------AQAAR-GS-------------- 258 (543)
T ss_pred HHHHHHHHHHHHHhhcc--CceeEEeeCCchHHHHHHHHH-------HHHHH------hhhhc-CC--------------
Confidence 47777777788877755 566778999999999999985 33321 01111 11
Q ss_pred cceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhc
Q 007749 410 KRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIR 489 (591)
Q Consensus 410 ~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R 489 (591)
.++++.+.-.+|+ +..+|+++|+.||..|++.-+. .++.++.+.++.-+-.. .|++ .|+|-.-
T Consensus 259 --~lhsFaIGle~SP--DL~aarkVAd~igt~Hhe~~ft--~qegidal~eVI~hLET---------YDvt--tIRastp 321 (543)
T KOG0571|consen 259 --KLHSFAIGLEDSP--DLLAARKVADFIGTIHHEHTFT--IQEGIDALDEVIYHLET---------YDVT--TIRASTP 321 (543)
T ss_pred --CceEEEecCCCCh--hHHHHHHHHHHhCCcceEEEEc--HHHHHHHHHHHheeeec---------cccc--eEecCCc
Confidence 3677666655554 5889999999999999877664 35556666665444332 3443 3444333
Q ss_pred HHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccc
Q 007749 490 MVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTK 528 (591)
Q Consensus 490 ~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~ 528 (591)
| |.+.+ .-.+.|-.+||+.-..||..-||.-+
T Consensus 322 m---yLlsr----~Ikk~gvkmvlSGEGsDEifggYlYf 353 (543)
T KOG0571|consen 322 M---YLLSR----KIKKLGVKMVLSGEGSDEIFGGYLYF 353 (543)
T ss_pred h---HHHHH----HHHhcceEEEEecCCchhhhcceeee
Confidence 3 22222 22344656788777778888887655
No 100
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=98.34 E-value=2.1e-06 Score=87.21 Aligned_cols=72 Identities=28% Similarity=0.299 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 007749 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (591)
Q Consensus 339 l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m 418 (591)
++.+++. ...+.+.||||+||+++|+++. +. +.. .+.++++
T Consensus 8 v~~~~~~--~~~v~~~LSGGlDSs~va~~~~-------~~---------------~~~---------------~~~~~~~ 48 (269)
T cd01991 8 VRRRLRS--DVPVGVLLSGGLDSSLVAALAA-------RL---------------LPE---------------PVKTFSI 48 (269)
T ss_pred HHHHhcc--CCceEEeecccHHHHHHHHHHH-------Hh---------------hCC---------------CCceEEE
Confidence 4444443 3689999999999999988873 21 111 1333433
Q ss_pred CCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 419 ~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
........+...|+.+|+.+|++|+++++++
T Consensus 49 ~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~ 79 (269)
T cd01991 49 GFGFEGSDEREYARRVAEHLGTEHHEVEFTP 79 (269)
T ss_pred eeCCCCCChHHHHHHHHHHhCCcceEEEcCH
Confidence 3333334458899999999999999998864
No 101
>PRK08576 hypothetical protein; Provisional
Probab=98.31 E-value=5.1e-06 Score=89.21 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=57.8
Q ss_pred HhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcc
Q 007749 332 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411 (591)
Q Consensus 332 ~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (591)
...+..-..+++++.+.++++|++|||.||++++.++. ++. +
T Consensus 218 le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~-------k~~--------------~----------------- 259 (438)
T PRK08576 218 LEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAK-------KAF--------------G----------------- 259 (438)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHH-------HhC--------------C-----------------
Confidence 33333344566777666699999999999999877762 321 1
Q ss_pred eEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEE
Q 007749 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDV 445 (591)
Q Consensus 412 ~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i 445 (591)
.+.++++.+....+++.+.++++|+.+|+++.+.
T Consensus 260 ~V~aV~iDTG~e~pet~e~~~~lae~LGI~lii~ 293 (438)
T PRK08576 260 DVTAVYVDTGYEMPLTDEYVEKVAEKLGVDLIRA 293 (438)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHcCCCEEEc
Confidence 2678888887777889999999999999999883
No 102
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=98.30 E-value=4.6e-06 Score=79.79 Aligned_cols=142 Identities=20% Similarity=0.326 Sum_probs=75.8
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecC--CCCCCHhh
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG--SENSSQET 427 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~--~~~ss~~t 427 (591)
+++||+|||.||++++.++.. +. +..+. .+.++++. -...+...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~--------~~-----------~~~~~---------------~~~~~~vdh~~~~~s~~~ 46 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKE--------LR-----------RRNGI---------------KLIAVHVDHGLREESDEE 46 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHH--------HH-----------TTTTT---------------EEEEEEEE-STSCCHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHH--------HH-----------HhcCC---------------CeEEEEEecCCCcccchh
Confidence 589999999999988777632 11 01111 36666665 33445667
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCC
Q 007749 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKP 507 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~ 507 (591)
.+.++++|+.+|+++.+..++. . ..+ + . ..|...-+.|...+..+|. +.
T Consensus 47 ~~~v~~~~~~~~i~~~~~~~~~---------~----~~~------~---~--~~e~~aR~~Ry~~l~~~a~-------~~ 95 (182)
T PF01171_consen 47 AEFVEEICEQLGIPLYIVRIDE---------D----RKK------G---S--NIEECARELRYQFLREIAK-------EE 95 (182)
T ss_dssp HHHHHHHHHHTT-EEEEEE--C---------H----CCT------T---S--TCHHHHHHHHHHHHHHHHH-------TT
T ss_pred HHHHHHHHHhcCCceEEEEeee---------e----ecc------c---C--CHHHHHHHHHHHHHHHhhh-------cc
Confidence 7889999999999999999964 0 000 0 1 1122222356666665554 33
Q ss_pred CCeEEEcCC-chh---hhh-----cc--cccccCC-------CCCCCcCCCCCcHHHHHHHHHHHHHhcCCc
Q 007749 508 GFYLVLGSS-NVD---EGL-----RG--YLTKYDC-------SSADINPIGSISKQDLRTFLRWAATHLGYS 561 (591)
Q Consensus 508 g~~lvl~t~-n~s---E~~-----~G--~~t~~gd-------~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~ 561 (591)
|. -+|.|| |.+ |.. .| ..++.|. ....+=||-.++|.+++++ ++..++|
T Consensus 96 g~-~~i~~GHh~dD~~ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~~k~ei~~~----~~~~~i~ 162 (182)
T PF01171_consen 96 GC-NKIALGHHLDDQAETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYVSKDEIRAY----AKENGIP 162 (182)
T ss_dssp T--CEEE---BHHHHHHHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS-HHHHHHH----HHHTT-S
T ss_pred cc-cceeecCcCCccHHHHHHHHHHhccchhhccccccccccCcccCCcchhCCHHHHHHH----HHHCCCc
Confidence 52 233333 333 321 12 1122221 1345779999999999999 6677887
No 103
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.25 E-value=7.1e-06 Score=90.30 Aligned_cols=82 Identities=29% Similarity=0.240 Sum_probs=52.8
Q ss_pred HHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 007749 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (591)
Q Consensus 330 e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (591)
++...+...++.+++ ....+.+.||||+||+++|+++. +. ....
T Consensus 237 ~l~~~l~~aV~~r~~--~~~~vg~~LSGGlDSs~iaa~a~-------~~---------------~~~~------------ 280 (467)
T TIGR01536 237 ELRSLLEDAVKRRLV--ADVPVGVLLSGGLDSSLVAAIAR-------RE---------------APRG------------ 280 (467)
T ss_pred HHHHHHHHHHHHHhc--cCCceEEEecCChhHHHHHHHHH-------Hh---------------cCCC------------
Confidence 445555555555554 33578899999999999988873 21 1100
Q ss_pred cceEEEEecCCC-CCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 410 KRIFYTVFMGSE-NSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 410 ~~~v~~v~m~~~-~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.+.++++... ...-.+...|+++|+.+|++|+++++++
T Consensus 281 --~~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~ 319 (467)
T TIGR01536 281 --PVHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSV 319 (467)
T ss_pred --CceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCH
Confidence 1444443322 1222345689999999999999999964
No 104
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.22 E-value=8e-06 Score=81.79 Aligned_cols=81 Identities=28% Similarity=0.331 Sum_probs=55.6
Q ss_pred HHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 007749 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (591)
Q Consensus 330 e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (591)
|+.+.+...+.++++ ....+.+.||||+||+++|+++. +. .+.
T Consensus 1 ~~r~~l~~av~~rl~--~~~~i~~~LSGGlDSs~i~~~~~-------~~--------------~~~-------------- 43 (255)
T PF00733_consen 1 ELRELLEEAVARRLR--SDKPIGILLSGGLDSSAIAALAA-------RQ--------------GGP-------------- 43 (255)
T ss_dssp HHHHHHHHHHHHHCG--CTSEEEEE--SSHHHHHHHHHHH-------HT--------------CCS--------------
T ss_pred CHHHHHHHHHHHHHh--cCCCEEEECCCChhHHHHHHHHH-------Hh--------------hCC--------------
Confidence 344555555666666 44789999999999999998873 21 111
Q ss_pred cceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 410 KRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 410 ~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.+.++++........+...|+++|+.+|++|+.+++++
T Consensus 44 --~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~ 81 (255)
T PF00733_consen 44 --PIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDP 81 (255)
T ss_dssp --EEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-H
T ss_pred --ceeEEEEEcCCCcchhHHHHHHHhcccccccceeeech
Confidence 47777776655555588889999999999999988875
No 105
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.22 E-value=5.6e-06 Score=79.55 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=76.5
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecC-CCCCCHhh
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG-SENSSQET 427 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~-~~~ss~~t 427 (591)
.++++.||||+||.+.+.++. + .|- .|+++++- .+++++..
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~-------k---------------rG~----------------~V~~l~f~~~~~~~~~~ 45 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMM-------K---------------RGC----------------EVIALHFDSPPFTGEKA 45 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHH-------C---------------BT-----------------EEEEEEEE-TTTSSCCC
T ss_pred ceEEEEecCCccHHHHHHHHH-------H---------------CCC----------------EEEEEEEECCCCCCHHH
Confidence 478888999999999777662 1 232 48889886 45667777
Q ss_pred HHHHHHHHHHh-------CCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccC
Q 007749 428 RMLAKKLADEI-------GSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLL 500 (591)
Q Consensus 428 ~~~A~~la~~l-------G~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~ 500 (591)
.+.++++++.| .++++.+|+.++...+...... .|..--+|. ++|..|.
T Consensus 46 ~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~~~---------------------~~~ci~ckr-~M~r~A~-- 101 (197)
T PF02568_consen 46 REKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGVKE---------------------RNPCIDCKR-FMYRIAE-- 101 (197)
T ss_dssp HHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS-G---------------------GGHHHHHHH-HHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcCCc---------------------cchhHHHHH-HHHHHHH--
Confidence 77788877776 3677889998776554332210 111111332 3455555
Q ss_pred cccccCCCCeEEEcCCch-----hhhhccc-ccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcC
Q 007749 501 PWVHNKPGFYLVLGSSNV-----DEGLRGY-LTKYDCSSADINPIGSISKQDLRTFLRWAATHLG 559 (591)
Q Consensus 501 ~~~~~~~g~~lvl~t~n~-----sE~~~G~-~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~ 559 (591)
.++.+.|. ..|-||+- |...-.. .+..+-..-.+-||.++.|+||.++ +++.|
T Consensus 102 -~ia~~~ga-~~IvTGEsLGQvaSQTl~nL~~i~~~~~~pIlRPLig~dK~EIi~~----Ar~Ig 160 (197)
T PF02568_consen 102 -EIAEEEGA-DAIVTGESLGQVASQTLENLRVIESASDLPILRPLIGFDKEEIIEI----ARKIG 160 (197)
T ss_dssp -HHHHHTT---EEE----SSSTTS--HHHHHHHGGG--S-EE-TTTT--HHHHHHH----HHHTT
T ss_pred -HHHHHCCC-CEEEeCchhHHHHhhhHHHHhhhhcccCCceeCCcCCCCHHHHHHH----HHHhC
Confidence 44555663 55556542 1100000 0001112247899999999999999 55555
No 106
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.11 E-value=6.1e-05 Score=77.48 Aligned_cols=76 Identities=18% Similarity=0.096 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 007749 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (591)
Q Consensus 338 ~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 417 (591)
-|+..+.+ ++++++++|||.||++++.|+ .+++.. +.. .+..++
T Consensus 19 iLrea~~~--f~~~vv~~SGGKDS~VLL~La-------~ka~~~------------~~~---------------~~~vl~ 62 (301)
T PRK05253 19 ILREVAAE--FENPVMLYSIGKDSSVMLHLA-------RKAFYP------------GKL---------------PFPLLH 62 (301)
T ss_pred HHHHHHHh--CCCEEEEecCCHHHHHHHHHH-------HHhhcc------------cCC---------------CeeEEE
Confidence 35555554 378999999999999998887 344210 010 266788
Q ss_pred cCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 418 m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
+.+....+++.+.+.++|+.+|+++.++..++
T Consensus 63 iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~~ 94 (301)
T PRK05253 63 VDTGWKFPEMIEFRDRRAKELGLELIVHSNPE 94 (301)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCEEEEeChH
Confidence 88777778999999999999999999987653
No 107
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=98.05 E-value=5.2e-05 Score=84.73 Aligned_cols=92 Identities=23% Similarity=0.236 Sum_probs=57.5
Q ss_pred HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 007749 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (591)
Q Consensus 329 ~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (591)
+++...+...++.+|.. -..+.+.||||+|||++|+++.. ...+..+ .......+.+
T Consensus 210 ~~lr~~L~~aV~~rl~s--dvpvGv~LSGGLDSSlIaala~~-------~~~~~~~--------~~~~~~~~~~------ 266 (554)
T PRK09431 210 NELRDALEAAVKKRLMS--DVPYGVLLSGGLDSSLISAIAKK-------YAARRIE--------DDERSEAWWP------ 266 (554)
T ss_pred HHHHHHHHHHHHHHhcC--CCceEEEcCCCccHHHHHHHHHH-------hhccccc--------ccccccccCC------
Confidence 45666666666666653 25788999999999999998842 1100000 0000000000
Q ss_pred hcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecH
Q 007749 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 409 ~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~ 448 (591)
.+++++++...+ .+...|+++|+.||..|+++.++
T Consensus 267 ---~l~tfsig~~~~--~D~~~A~~vA~~lg~~h~~v~~t 301 (554)
T PRK09431 267 ---QLHSFAVGLEGS--PDLKAAREVADHLGTVHHEIHFT 301 (554)
T ss_pred ---CceEEEEeCCCC--ChHHHHHHHHHHhCCccEEEEeC
Confidence 266666665443 36788999999999999999885
No 108
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=98.04 E-value=4.1e-05 Score=86.01 Aligned_cols=149 Identities=28% Similarity=0.283 Sum_probs=84.4
Q ss_pred HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 007749 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (591)
Q Consensus 329 ~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (591)
+++...+...++.+|+. ...+.+.||||+|||++|+++.+ ...++. +... +.
T Consensus 220 ~~lr~~L~~AV~~rl~s--dvpvGv~LSGGLDSSlIaala~~-------~~~~~~---------~~~~----------~~ 271 (586)
T PTZ00077 220 EEIREALEAAVRKRLMG--DVPFGLFLSGGLDSSIVAAIVAK-------LIKNGE---------IDLS----------KR 271 (586)
T ss_pred HHHHHHHHHHHHHHhcC--CCceEEEecCCchHHHHHHHHHH-------hhcccc---------cccc----------cc
Confidence 45667777777777763 35788999999999999998842 211000 0000 00
Q ss_pred hcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhh
Q 007749 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (591)
Q Consensus 409 ~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~ 488 (591)
....+++++++...+ .+...|+++|+.||..|+++.++. +.+.+.+.++.-+... .+... +.+
T Consensus 272 ~~~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~~i~~~~--~e~~~~l~~~i~~le~--------~~~~~---~~~-- 334 (586)
T PTZ00077 272 GMPKLHSFCIGLEGS--PDLKAARKVAEYLGTEHHEFTFTV--EEGIDALPDVIYHTET--------YDVTT---IRA-- 334 (586)
T ss_pred cCCCceEEEcCCCCC--chHHHHHHHHHHhCCcCcEEEECH--HHHHHHHHHHHHHhcC--------CCCCC---cch--
Confidence 001377888775443 467889999999999998887642 3333334433111100 00011 111
Q ss_pred cHHHHHHHHccCcccccCCCCeEEEcCCchhhhhccccc
Q 007749 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLT 527 (591)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t 527 (591)
..-+|.+++ .+.+.|..++|+.-..||..-||.-
T Consensus 335 -~~p~yll~r----~a~~~gvkVvLsGeGaDElFgGY~~ 368 (586)
T PTZ00077 335 -STPMYLLSR----RIKALGIKMVLSGEGSDELFGGYLY 368 (586)
T ss_pred -HHHHHHHHH----HHHhcCCeEEEecCchhhhccCcHh
Confidence 122333332 2234455678877778899888853
No 109
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=98.03 E-value=3.1e-05 Score=88.44 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=54.1
Q ss_pred HHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 007749 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (591)
Q Consensus 330 e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (591)
++...+...++.+++. ...+.+.||||+||+++|++++ +. +..
T Consensus 242 ~l~~~l~~aV~~rl~~--d~~vg~~LSGGlDSs~Iaa~~~-------~~---------------~~~------------- 284 (628)
T TIGR03108 242 ELIERLREAVRSRMVA--DVPLGAFLSGGVDSSAVVALMA-------GL---------------SDT------------- 284 (628)
T ss_pred HHHHHHHHHHHHHHhc--CCcceEeecCCccHHHHHHHHH-------Hh---------------cCC-------------
Confidence 3455555555555543 2467788999999999988763 11 111
Q ss_pred cceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 410 KRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 410 ~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.+.++++....+...+...|+.+|+.+|.+|+++.+++
T Consensus 285 --~i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~ 322 (628)
T TIGR03108 285 --PVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDP 322 (628)
T ss_pred --CCcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCH
Confidence 24555544333334567889999999999999998875
No 110
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=98.03 E-value=5.2e-05 Score=84.97 Aligned_cols=146 Identities=22% Similarity=0.233 Sum_probs=84.8
Q ss_pred HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 007749 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (591)
Q Consensus 329 ~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (591)
+++...+...++.+|.. -..+.+.||||+|||++|+++. +.+++. ... ..+
T Consensus 208 ~~lr~~L~~aV~~rl~s--dvpvgv~LSGGLDSSlIaala~-------~~~~~~-----------~~~-~~~-------- 258 (578)
T PLN02549 208 LVLREAFEKAVIKRLMT--DVPFGVLLSGGLDSSLVASIAA-------RHLAET-----------KAA-RQW-------- 258 (578)
T ss_pred HHHHHHHHHHHHHHhcc--CCceeEeecCCccHHHHHHHHH-------Hhhhhc-----------ccc-ccc--------
Confidence 56777777777777753 3568899999999999999884 222110 000 000
Q ss_pred hcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhh
Q 007749 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (591)
Q Consensus 409 ~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~ 488 (591)
...+++++.+...+ .+...|+++|+.||..|+++.++. +.+.+.+.++.-+...+ .+.. +
T Consensus 259 -~~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~ev~~~~--~e~~~~l~~~i~~le~~--------dp~~-------~ 318 (578)
T PLN02549 259 -GQQLHSFCVGLEGS--PDLKAAREVADYLGTVHHEFHFTV--QEGIDAIEDVIYHLETY--------DVTT-------I 318 (578)
T ss_pred -CCCceEEecCCCCC--CHHHHHHHHHHHhCCCCeEEEECh--HHHHHHHHHHHHHhcCC--------CCcc-------c
Confidence 00367777765443 367789999999999999987753 33333344321111000 0011 1
Q ss_pred c-HHHHHHHHccCcccccCCCCeEEEcCCchhhhhccccc
Q 007749 489 R-MVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLT 527 (591)
Q Consensus 489 R-~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t 527 (591)
| .+-+|.++. .+.+.|..+||+....||..-||.-
T Consensus 319 ~~s~p~yll~r----~a~~~gvkVvLsGeGaDElFgGY~~ 354 (578)
T PLN02549 319 RASTPMFLMSR----KIKSLGVKMVLSGEGSDEIFGGYLY 354 (578)
T ss_pred hhHHHHHHHHH----HHHhcCCEEEEecCchHhhhcChHh
Confidence 2 122333332 2233455688888888999888853
No 111
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.97 E-value=1.5e-05 Score=76.92 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=43.6
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCC------
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS------ 423 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~s------ 423 (591)
++++++|||.||++++.++. + .|. .+.++++-+...
T Consensus 1 kv~v~~SGGkDS~~al~~a~-------~---------------~G~----------------~v~~l~~~~~~~~~~~~~ 42 (194)
T cd01994 1 KVVALISGGKDSCYALYRAL-------E---------------EGH----------------EVVALLNLTPEEGSSMMY 42 (194)
T ss_pred CEEEEecCCHHHHHHHHHHH-------H---------------cCC----------------EEEEEEEEecCCCCcccc
Confidence 47899999999999877662 2 232 355555443222
Q ss_pred CHhhHHHHHHHHHHhCCceEEEecH
Q 007749 424 SQETRMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 424 s~~t~~~A~~la~~lG~~~~~i~i~ 448 (591)
.....+.++++|+.+|++|..++++
T Consensus 43 h~~~~e~~~~~A~~lgipl~~i~~~ 67 (194)
T cd01994 43 HTVNHELLELQAEAMGIPLIRIEIS 67 (194)
T ss_pred cccCHHHHHHHHHHcCCcEEEEeCC
Confidence 2236789999999999999999873
No 112
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=8.7e-05 Score=76.62 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=87.5
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC--CCHh
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQE 426 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~--ss~~ 426 (591)
.+++||+|||.||++++.++. .+ ... -.+.++++.-.. .+..
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~--------~l--------------~~~--------------~~~~a~~Vd~~~~~~~~~ 65 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLK--------EL--------------GRR--------------IEVEAVHVDHGLRGYSDQ 65 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHH--------Hh--------------ccC--------------ceEEEEEecCCCCCccch
Confidence 799999999999999887762 21 110 036677776433 3467
Q ss_pred hHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccC
Q 007749 427 TRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNK 506 (591)
Q Consensus 427 t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~ 506 (591)
..+.++.+|+.+|+++.+.++...... ... ..-..+....++|..+++..|..
T Consensus 66 ~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~----------~~~~~c~~c~~~R~~~l~~~a~~------- 118 (298)
T COG0037 66 EAELVEKLCEKLGIPLIVERVTDDLGR----------ETL----------DGKSICAACRRLRRGLLYKIAKE------- 118 (298)
T ss_pred HHHHHHHHHHHhCCceEEEEEEeeccc----------ccc----------CCCChhHHHHHHHHHHHHHHHHH-------
Confidence 788899999999999998888643210 000 00113455556676777766543
Q ss_pred CCCeEEEcCC-chhhhh------ccccc-------c---cC-CCC-CCCcCCCCCcHHHHHHHHHHHHHhcCCc
Q 007749 507 PGFYLVLGSS-NVDEGL------RGYLT-------K---YD-CSS-ADINPIGSISKQDLRTFLRWAATHLGYS 561 (591)
Q Consensus 507 ~g~~lvl~t~-n~sE~~------~G~~t-------~---~g-d~~-~~~~Pl~~l~K~~v~~l~~~~~~~~~~~ 561 (591)
.|. -+|.|| |.++.+ +...+ + .. ... ..+-||..+++.++..+ +...++|
T Consensus 119 ~g~-~~i~tgH~~dD~~et~lm~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL~~~~~~ei~~~----~~~~~l~ 187 (298)
T COG0037 119 LGA-DKIATGHHLDDQAETFLMNLLRGSGLRGLRGMPPKRPFEGGLLIIRPLLYVREKEIELY----AKEKGLP 187 (298)
T ss_pred cCC-CeEEeccCcHHHHHHHHHHHHcCcHhhHHhhCCcccccCCCCeeeeecccCCHHHHHHH----HHHcCCC
Confidence 364 344443 444322 11111 1 11 111 36789999999999999 5556665
No 113
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.94 E-value=9e-05 Score=81.67 Aligned_cols=144 Identities=19% Similarity=0.268 Sum_probs=82.4
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC-CCHh-
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN-SSQE- 426 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~-ss~~- 426 (591)
+++++.||||+||++++.++. + .|. .++++++.+.. ++..
T Consensus 178 gk~lvllSGGiDS~va~~~~~-------k---------------rG~----------------~v~~l~f~~g~~~~~~~ 219 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLM-------R---------------RGS----------------RVHYCFFNLGGAAHEIG 219 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHH-------H---------------cCC----------------EEEEEEEecCCchhHHH
Confidence 579999999999999877662 1 232 48888886432 2232
Q ss_pred hHHHHHHHHHHhC----CceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcc
Q 007749 427 TRMLAKKLADEIG----SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPW 502 (591)
Q Consensus 427 t~~~A~~la~~lG----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~ 502 (591)
..+.|+.+|+.++ ++++++++.+...++ +. ..+ +. +..+-.| | ++|.+|+ .
T Consensus 220 ~~~~a~~l~~~~~~~~~~~l~~v~~~~~~~~i---~~----~~~----------~~--~~~~v~r-R--~ml~iA~---~ 274 (482)
T PRK01269 220 VKQVAHYLWNRYGSSHRVRFISVDFEPVVGEI---LE----KVD----------DG--QMGVVLK-R--MMLRAAS---K 274 (482)
T ss_pred HHHHHHHHHHHhCccCCceEEEEecHHHHHHH---Hh----cCC----------Cc--eecHHHH-H--HHHHHHH---H
Confidence 5677888888776 446777876654432 21 111 11 1222222 2 5555665 3
Q ss_pred cccCCCC-eEEEcCCchhhhh----cccccc-cCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCC
Q 007749 503 VHNKPGF-YLVLGSSNVDEGL----RGYLTK-YDCSSADINPIGSISKQDLRTFLRWAATHLGY 560 (591)
Q Consensus 503 ~~~~~g~-~lvl~t~n~sE~~----~G~~t~-~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~ 560 (591)
+|.+.|. .++.|- |.++.+ ....+. .+...-.+.||.+++|.||-++ ++++|.
T Consensus 275 ~A~~~ga~~IvtG~-~l~dvasqtl~nl~~~~~~~~~~v~rPLi~~dK~EIi~~----a~~ig~ 333 (482)
T PRK01269 275 VAERYGIQALVTGE-ALGQVSSQTLTNLRLIDNVTDTLILRPLIAMDKEDIIDL----AREIGT 333 (482)
T ss_pred HHHHcCCCEEEECc-ChHhhhhHHHHHHHhhhhhcCCceecCCcCCCHHHHHHH----HHHhCC
Confidence 3444453 233333 333321 111111 1112346899999999999999 777775
No 114
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.90 E-value=5e-05 Score=74.73 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.3
Q ss_pred HhhHHHHHHHHHHhCCceEEEecH
Q 007749 425 QETRMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 425 ~~t~~~A~~la~~lG~~~~~i~i~ 448 (591)
....+.|+.+|+.+|++|.+++++
T Consensus 42 ~~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 42 TPNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CCCHHHHHHHHHHhCCCEEEEECC
Confidence 446789999999999999999986
No 115
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.90 E-value=0.00012 Score=79.50 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 007749 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (591)
Q Consensus 338 ~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 417 (591)
.|.+.+++. ++++||+|||+||++++.++.. ++. ...+. .+++++
T Consensus 7 ~l~~~l~~~--~~ilvavSGG~DS~~Ll~~l~~--------~~~---------~~~~~----------------~l~a~h 51 (436)
T PRK10660 7 TLNRQLLTS--RQILVAFSGGLDSTVLLHLLVQ--------WRT---------ENPGV----------------TLRAIH 51 (436)
T ss_pred HHHHhcCCC--CeEEEEecCCHHHHHHHHHHHH--------HHH---------hcCCC----------------eEEEEE
Confidence 344555543 7899999999999987776632 100 00111 478888
Q ss_pred cCCCC--CCHhhHHHHHHHHHHhCCceEEEecH
Q 007749 418 MGSEN--SSQETRMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 418 m~~~~--ss~~t~~~A~~la~~lG~~~~~i~i~ 448 (591)
+.... .++...+.++++|+.+|++|++++++
T Consensus 52 vnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 52 VHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred EeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 87543 34445577899999999999998885
No 116
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.83 E-value=0.0001 Score=83.34 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=56.4
Q ss_pred HHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 007749 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (591)
Q Consensus 330 e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (591)
++...+...++.+++. ...+.+-||||+||+++|+++. + .+..
T Consensus 244 ~l~~~L~~AV~~rl~s--d~pvg~~LSGGlDSs~Iaa~~~-------~---------------~~~~------------- 286 (589)
T TIGR03104 244 AILEALRLAVKRRLVA--DVPVGVLLSGGLDSSLIVGLLA-------E---------------AGVD------------- 286 (589)
T ss_pred HHHHHHHHHHHHHhhc--CCceeEEecCCccHHHHHHHHH-------H---------------hcCC-------------
Confidence 4555566666666643 3678899999999999988763 1 1211
Q ss_pred cceEEEEecCCCCCC---HhhHHHHHHHHHHhCCceEEEecHH
Q 007749 410 KRIFYTVFMGSENSS---QETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 410 ~~~v~~v~m~~~~ss---~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.+.|+++....+. -.+...|+++|+.+|.+|+++.+++
T Consensus 287 --~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~ 327 (589)
T TIGR03104 287 --GLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPN 327 (589)
T ss_pred --CceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCH
Confidence 2566666543331 2467889999999999999998864
No 117
>PRK05370 argininosuccinate synthase; Validated
Probab=97.76 E-value=0.00021 Score=75.97 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=50.6
Q ss_pred CCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHh
Q 007749 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (591)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~ 426 (591)
+-++|+|+.|||+|||+++.-+ ++ .+. .|+|++........+
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL--------~e--------------~~~----------------eVia~~aDvGQ~~~e 51 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWM--------RQ--------------KGA----------------VPYAYTANLGQPDED 51 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHH--------Hh--------------cCC----------------eEEEEEEECCCCCcc
Confidence 4478999999999999875543 11 122 488988875443346
Q ss_pred hHHHHHHHHHHhCC-ceEEEecHHHH
Q 007749 427 TRMLAKKLADEIGS-WHLDVSIDTVV 451 (591)
Q Consensus 427 t~~~A~~la~~lG~-~~~~i~i~~~~ 451 (591)
+.+.+++-|..+|+ +++++|..+.|
T Consensus 52 d~~~i~~kA~~~GA~~~~viDlr~eF 77 (447)
T PRK05370 52 DYDAIPRRAMEYGAENARLIDCRAQL 77 (447)
T ss_pred chHHHHHHHHHhCCCEEEEeccHHHH
Confidence 78899999999999 69999998754
No 118
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00025 Score=79.00 Aligned_cols=137 Identities=23% Similarity=0.217 Sum_probs=81.3
Q ss_pred HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 007749 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (591)
Q Consensus 329 ~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (591)
+++...+...+..+++ ....+.+-||||+|||++|+++. +.. ...
T Consensus 213 ~~l~~~l~~sV~~r~~--advpvg~~lSGGlDSS~Iaa~a~-------~~~--------------~~~------------ 257 (542)
T COG0367 213 EHLRSLLEDAVKRRLV--ADVPVGVFLSGGLDSSLIAAIAA-------EEL--------------GKE------------ 257 (542)
T ss_pred HHHHHHHHHHHHHHhc--cCCcEEEEeCCCccHHHHHHHHH-------Hhc--------------ccc------------
Confidence 4555555555555553 34678888999999999999883 221 110
Q ss_pred hcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhh
Q 007749 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (591)
Q Consensus 409 ~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~ 488 (591)
..++.+....++...+...|+++|+.||.+|+.+.+.+ +++...+.++.-..+.+ . . +.
T Consensus 258 ---~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~--~e~~~~~~~vv~~~~~p--------~-~----~~--- 316 (542)
T COG0367 258 ---GKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTN--EELLNALPEVVKALDTP--------G-G----MA--- 316 (542)
T ss_pred ---ceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecH--HHHHHHHHHHHhhcCCC--------C-c----cc---
Confidence 12123333334444578889999999999998887764 34444455543332211 1 0 11
Q ss_pred cHHHHHHHHccCcccccCCCCeEEEcCCchhhhhccc
Q 007749 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGY 525 (591)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~ 525 (591)
=..-+|.++ ..+.+.|..+|+..--.||..-||
T Consensus 317 ~~~ply~~~----~~a~~~g~kVvLSGeGADElFgGY 349 (542)
T COG0367 317 ASIPLYLLS----RKARAEGEKVVLSGEGADELFGGY 349 (542)
T ss_pred chhHHHHHH----HhhhhcCcEEeecCccHHHHhcCC
Confidence 112344444 234555645777666688999999
No 119
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.62 E-value=0.0002 Score=67.86 Aligned_cols=156 Identities=22% Similarity=0.217 Sum_probs=83.8
Q ss_pred HHHHHhchhHHHHHHHH------HhCC--CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCC
Q 007749 328 EEEIAFGPGCWLWDYLR------RSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANG 399 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~------~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~ 399 (591)
+.|.+.++..-|..+|. +.+. .+++|++|||+|||+++.++. ++ +-.
T Consensus 32 ~~e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR-------~~---------------g~~--- 86 (255)
T COG1365 32 EKEVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILR-------WA---------------GFT--- 86 (255)
T ss_pred cHHHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHH-------hh---------------cee---
Confidence 34555555555554443 2233 479999999999999988872 21 210
Q ss_pred CCCCChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecH--HHHHHHHHHhhhhhCCCCCcccCCCCCCC
Q 007749 400 EFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID--TVVSAFLSLFQTLTGKRPCYKVDGGSNVE 477 (591)
Q Consensus 400 ~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (591)
..| .+.. -+++-+.++..++..||..+.-+..+ ++.+.. +. |+- +
T Consensus 87 v~p-----------~t~~-----Lp~~ir~n~~~l~~~lg~~p~yveedl~~i~kGa---ln---GRf-----------h 133 (255)
T COG1365 87 VDP-----------GTAI-----LPDHIRRNKEELETLLGEVPEYVEEDLEDIEKGA---LN---GRF-----------H 133 (255)
T ss_pred ecc-----------cccc-----CCHHHhHHHHHHHHHHccCHHHHHHHHHHHHhhh---cc---CCC-----------C
Confidence 000 1222 34456778999999999987655432 222211 11 211 1
Q ss_pred chhhhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhccccccc-CCCCCCCcC--CCCCcHHHHHHHHHHH
Q 007749 478 NLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKY-DCSSADINP--IGSISKQDLRTFLRWA 554 (591)
Q Consensus 478 d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~-gd~~~~~~P--l~~l~K~~v~~l~~~~ 554 (591)
.+-.+|-. ++. ..+ +.+.+.+. -++.+||. +.+||...| .|..--++- +-.++|.++|.++.|-
T Consensus 134 pCGRCh~~--I~~-~V~-------~k~re~di-~~vafGDl--Ls~G~~svy~eD~i~rlnlPAflAltK~Elr~il~~~ 200 (255)
T COG1365 134 PCGRCHSM--IEN-AVM-------DKARELDI-DVVAFGDL--LSTGYGSVYREDGIFRLNLPAFLALTKDELRSILKWN 200 (255)
T ss_pred CcchHHHH--HHH-HHH-------HHHHhcCC-eEEEEccc--ccccccceeccCCEEEEccHHHHhhCcHHHHHHHHhc
Confidence 22223322 111 112 33334453 56667664 456877666 444332221 1368999999998883
No 120
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=97.61 E-value=0.0007 Score=67.77 Aligned_cols=73 Identities=18% Similarity=0.100 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 007749 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (591)
Q Consensus 338 ~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 417 (591)
.|+.-+++.+ ++++|++|||-||++++.|+. + .+. .+..++
T Consensus 31 ~i~~a~~~~~-~~i~vs~SGGKDS~vlL~L~~-------~---------------~~~----------------~i~vvf 71 (241)
T PRK02090 31 RLAWALENFG-GRLALVSSFGAEDAVLLHLVA-------Q---------------VDP----------------DIPVIF 71 (241)
T ss_pred HHHHHHHHcC-CCEEEEecCCHHHHHHHHHHH-------h---------------cCC----------------CCcEEE
Confidence 3455566655 459999999999999888773 1 121 367889
Q ss_pred cCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 418 m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
+.+....++|.+-++++++.+|++++++....
T Consensus 72 iDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~ 103 (241)
T PRK02090 72 LDTGYLFPETYRFIDELTERLLLNLKVYRPDA 103 (241)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 99888899999999999999999999997753
No 121
>PRK13794 hypothetical protein; Provisional
Probab=97.53 E-value=0.0014 Score=72.04 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 007749 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (591)
Q Consensus 337 ~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 416 (591)
..|+..+.+.+ +.++|++|||.||++++.|+ .+++ +. .+..+
T Consensus 237 ~~i~~~~~~~~-~~v~vs~SGGKDS~v~L~L~-------~~~~--------------~~----------------~~~vv 278 (479)
T PRK13794 237 GFIRNTAEKIN-KPVTVAYSGGKDSLATLLLA-------LKAL--------------GI----------------NFPVL 278 (479)
T ss_pred HHHHHHHHhcC-CCEEEEecchHHHHHHHHHH-------HHHh--------------CC----------------CeEEE
Confidence 45555555444 67999999999999988877 2432 21 37789
Q ss_pred ecCCCCCCHhhHHHHHHHHHHhCCceEEEecH
Q 007749 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 417 ~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~ 448 (591)
++.+....++|.+.++++++.+|+++..+..+
T Consensus 279 fiDTG~efpet~e~i~~~~~~~gl~i~~~~~~ 310 (479)
T PRK13794 279 FNDTGLEFPETLENVEDVEKHYGLEIIRTKSE 310 (479)
T ss_pred EEECCCCChHHHHHHHHHHHhcCCcEEEEchH
Confidence 99888778999999999999999999888765
No 122
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00094 Score=69.20 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=51.5
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhh
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t 427 (591)
.++++|+.|||+|+|++...+ .+. .+. .|+|++..-... +++
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL-------~e~--------------~~~----------------eVia~tadvGQ~-eed 45 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWL-------KEK--------------GGA----------------EVIAVTADVGQP-EED 45 (403)
T ss_pred CcEEEEEecCCccHHHHHHHH-------HHh--------------cCc----------------eEEEEEEeCCCC-hHH
Confidence 478999999999999865544 122 122 489998875433 789
Q ss_pred HHHHHHHHHHhCCc-eEEEecHHHH
Q 007749 428 RMLAKKLADEIGSW-HLDVSIDTVV 451 (591)
Q Consensus 428 ~~~A~~la~~lG~~-~~~i~i~~~~ 451 (591)
.+.+++=|..+|+. |+++|..+-|
T Consensus 46 ~~~i~eKA~~~Ga~~~~viD~reeF 70 (403)
T COG0137 46 LDAIREKALELGAEEAYVIDAREEF 70 (403)
T ss_pred hHHHHHHHHHhCCceEEEeecHHHH
Confidence 99999999999999 9999998754
No 123
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=97.51 E-value=0.0014 Score=61.68 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=46.2
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
.++|++|||-||++++.|+. ++. . .+..+++.+....++|.+
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~-------~~~---------------~----------------~~~vv~~dtg~e~p~t~~ 42 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAR-------EAG---------------R----------------KVPVVFIDTGYEFPETYE 42 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHH-------HHH---------------T----------------TCEEEEEE-STB-HHHHH
T ss_pred CeEEEecCCHHHHHHHHHHH-------Hhc---------------C----------------CCcEEEEecCccCHHHHH
Confidence 37899999999999988873 332 1 135667777778899999
Q ss_pred HHHHHHHHhCCceEEEecHHHH
Q 007749 430 LAKKLADEIGSWHLDVSIDTVV 451 (591)
Q Consensus 430 ~A~~la~~lG~~~~~i~i~~~~ 451 (591)
-++.+++.+|++...+......
T Consensus 43 ~~~~~~~~~~~~i~~~~~~~~~ 64 (174)
T PF01507_consen 43 FVDELAKRYGIPIIVYRPPETF 64 (174)
T ss_dssp HHHHHHHHTTCEEEEEETTSHH
T ss_pred HHHHHHhhhhhhhhhcccccch
Confidence 9999999999997777665443
No 124
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=97.43 E-value=0.003 Score=64.64 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 007749 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (591)
Q Consensus 339 l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m 418 (591)
|+.-..+. ++.++++|||-||++++.|+ .++... +.. .+..+++
T Consensus 12 lRe~~~~f--~~~vv~~SGGKDS~VlLhLa-------~kaf~~------------~~~---------------p~~vl~I 55 (294)
T TIGR02039 12 IREVAAEF--ERPVMLYSIGKDSSVLLHLA-------RKAFYP------------GPL---------------PFPLLHV 55 (294)
T ss_pred HHHHHHhc--CCcEEEEecChHHHHHHHHH-------HHHhcc------------cCC---------------CeEEEEE
Confidence 44444443 45678999999999988887 344211 111 3678888
Q ss_pred CCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 419 ~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.+...-+++.+...++|+.+|+++.+...++
T Consensus 56 DTG~~F~Et~efrd~~a~~~gl~l~v~~~~~ 86 (294)
T TIGR02039 56 DTGWKFREMIAFRDHMVAKYGLRLIVHSNEE 86 (294)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCEEEEechh
Confidence 8877778899999999999999999987764
No 125
>PRK13795 hypothetical protein; Provisional
Probab=97.27 E-value=0.0012 Score=75.03 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=61.4
Q ss_pred HHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhc
Q 007749 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (591)
Q Consensus 331 ~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (591)
+.......|+..+.+. ..+++|++|||.||++++.|+. +++ .
T Consensus 227 ~~~~ai~~Ir~~~~~~-~~~v~Va~SGGKDS~vll~L~~-------~a~---------------~--------------- 268 (636)
T PRK13795 227 KEKEAVNFIRGVAEKY-NLPVSVSFSGGKDSLVVLDLAR-------EAL---------------K--------------- 268 (636)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEEecCcHHHHHHHHHHH-------HhC---------------C---------------
Confidence 3333345667766655 3689999999999999888872 331 1
Q ss_pred ceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 411 ~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.+..+++.+....++|.+.++++++.+|+++.+++..+
T Consensus 269 -~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~ 306 (636)
T PRK13795 269 -DFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGD 306 (636)
T ss_pred -CcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccH
Confidence 25678888877788999999999999999999998864
No 126
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=97.24 E-value=0.0024 Score=67.13 Aligned_cols=162 Identities=20% Similarity=0.262 Sum_probs=95.9
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecC-CCCCCHhh
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG-SENSSQET 427 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~-~~~ss~~t 427 (591)
.++++-||||+||-+.+.++. +. |- .++.|++. ..++++..
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~m----------kR------------G~----------------~v~~v~f~~~p~~~~~a 217 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLMM----------KR------------GV----------------EVIPVHFGNPPYTSEKA 217 (383)
T ss_pred CcEEEEEeCCCChHHHHHHHH----------hc------------CC----------------EEEEEEEcCCCCchHHH
Confidence 468888999999999877762 11 32 47888884 45778888
Q ss_pred HHHHHHHH-HHhC-----CceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCc
Q 007749 428 RMLAKKLA-DEIG-----SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLP 501 (591)
Q Consensus 428 ~~~A~~la-~~lG-----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~ 501 (591)
.+.+..++ ..+. +.++.+|..++.+.+.....+ + +-++- +|. .+|.+|.
T Consensus 218 ~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~~~------~-------------y~~v~--~rR-~M~riA~--- 272 (383)
T COG0301 218 REKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKVPE------S-------------YRCVL--LKR-MMYRIAE--- 272 (383)
T ss_pred HHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhcCc------c-------------ceehH--HHH-HHHHHHH---
Confidence 88888888 5554 446788888776665332211 0 11222 222 3455665
Q ss_pred ccccCCCCeEEEcCCch-----hhhhccc-ccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCC---c-cc---ccccc
Q 007749 502 WVHNKPGFYLVLGSSNV-----DEGLRGY-LTKYDCSSADINPIGSISKQDLRTFLRWAATHLGY---S-SL---AEIEA 568 (591)
Q Consensus 502 ~~~~~~g~~lvl~t~n~-----sE~~~G~-~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~---~-i~---~~i~~ 568 (591)
.++.+.|+ ..+-||.- |...-.- ....+-..-.+-||-++.|.+|-++ +++.|. . .| --.+-
T Consensus 273 ~iae~~g~-~aIvtGEsLGQVASQTl~nL~~i~~~t~~pIlRPLI~~DK~eIi~~----Ar~IgT~eiSi~p~e~cc~~f 347 (383)
T COG0301 273 KLAEEFGA-KAIVTGESLGQVASQTLENLRVIDSVTNTPVLRPLIGLDKEEIIEI----ARRIGTYEISIEPPEDCCVIF 347 (383)
T ss_pred HHHHHhCC-eEEEecCcchhhhHhHHHHHHHHHhccCCceeccccCCCHHHHHHH----HHHhCChhhhccCCCCCcCcc
Confidence 45666774 66666542 2111000 0111122347899999999999999 666552 1 00 12345
Q ss_pred CCCCCCcccC
Q 007749 569 APPTAELEPI 578 (591)
Q Consensus 569 ~~psaeL~p~ 578 (591)
+||.|--.|.
T Consensus 348 ~p~~p~t~~~ 357 (383)
T COG0301 348 APPTPKTKPK 357 (383)
T ss_pred CCCCCccCcc
Confidence 6777766663
No 127
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.96 E-value=0.017 Score=59.40 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEe
Q 007749 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (591)
Q Consensus 338 ~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 417 (591)
-|+..+.. +++.+++.|||.||++++.|+ .+++.. +.. .+-.++
T Consensus 29 ilrea~~~--f~~~~v~~SgGKDS~VlLhLa-------~kaf~~------------~~~---------------~~pvl~ 72 (312)
T PRK12563 29 ILREVVAE--CSKPVMLYSIGKDSVVMLHLA-------MKAFRP------------TRP---------------PFPLLH 72 (312)
T ss_pred HHHHHHHh--cCCcEEEecCChHHHHHHHHH-------HHhhcc------------cCC---------------CeeEEE
Confidence 34444444 467899999999999998887 344210 111 266888
Q ss_pred cCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 418 m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
+.+...-++|.+-..++++.+|+++.+..-.+
T Consensus 73 VDTG~~FpEt~efrD~~a~~~gl~Liv~~~~~ 104 (312)
T PRK12563 73 VDTTWKFREMIDFRDRRAKELGLDLVVHHNPD 104 (312)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCcEEEecChH
Confidence 99988899999999999999999988876544
No 128
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=96.83 E-value=0.016 Score=56.82 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=49.6
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
.+++++.|||.||++++-|+. +. .+ .+..+++.+...-++|.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~-------~~---------------~~----------------~~~v~f~DTg~efpeT~ 55 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVS-------KI---------------SP----------------DIPVIFLDTGYHFPETY 55 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHH-------hc---------------CC----------------CCcEEEecCCCCCHHHH
Confidence 479999999999999887772 21 11 25577999988999999
Q ss_pred HHHHHHHHHhCCceEEEecH
Q 007749 429 MLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 429 ~~A~~la~~lG~~~~~i~i~ 448 (591)
+-..++++.+|++...+.-+
T Consensus 56 efv~~~~~~~~l~i~~~~~~ 75 (212)
T TIGR00434 56 ELIDELTERYPLNIKVYKPD 75 (212)
T ss_pred HHHHHHHHHhCCceEEECCc
Confidence 99999999999887776543
No 129
>PRK08557 hypothetical protein; Provisional
Probab=96.79 E-value=0.0089 Score=64.32 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=60.2
Q ss_pred HHHhchhHHHHHHHHHhCC--CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 007749 330 EIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (591)
Q Consensus 330 e~~~~~~~~l~d~l~~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (591)
++.......|+..+++.+. ..+++++|||.||++++.|+. ++ +.
T Consensus 161 ~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~-------~~---------------~~------------ 206 (417)
T PRK08557 161 KLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAK-------EV---------------IP------------ 206 (417)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHH-------Hh---------------CC------------
Confidence 3444444567777776654 357899999999999877762 22 11
Q ss_pred hhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecH
Q 007749 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 408 ~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~ 448 (591)
.+..+++.+....++|.+.++++++.+|+++.++.-+
T Consensus 207 ----~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 207 ----DLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred ----CCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 2567888887778999999999999999999988753
No 130
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=96.69 E-value=0.0033 Score=54.04 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=16.0
Q ss_pred EEEecCCChhhHHHHHHH
Q 007749 351 FLLPLSGGADSSSVAAIV 368 (591)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~ 368 (591)
++|++|||+||++++.++
T Consensus 1 v~v~~SGG~DS~~ll~~l 18 (103)
T cd01986 1 VLVAFSGGKDSSVAAALL 18 (103)
T ss_pred CEEEEeCcHHHHHHHHHH
Confidence 579999999999988776
No 131
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=96.63 E-value=0.0043 Score=65.66 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=43.4
Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHHHH
Q 007749 352 LLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLA 431 (591)
Q Consensus 352 ~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~A 431 (591)
||++|||+|||+++..+ .+ .+.. .|+|++..... ++++.+.+
T Consensus 1 VLAySGGLDTS~~l~~L-------~e---------------~~~~---------------~Via~~aDlGq-~~~d~~~i 42 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWL-------KE---------------EGGY---------------EVIAVTADLGQ-PDEDLEAI 42 (388)
T ss_dssp EEE--SSHHHHHHHHHH-------HH---------------TTTE---------------EEEEEEEESSS-T-S-HHHH
T ss_pred CeeeCCChHHHHHHHHH-------Hh---------------hcCc---------------eEEEEEEECCC-cHHHHHHH
Confidence 68999999999875544 12 1211 59999988654 45788999
Q ss_pred HHHHHHhCC-ceEEEecHHHHH
Q 007749 432 KKLADEIGS-WHLDVSIDTVVS 452 (591)
Q Consensus 432 ~~la~~lG~-~~~~i~i~~~~~ 452 (591)
++-|..+|+ +++++|..+.+-
T Consensus 43 ~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 43 EEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp HHHHHHHT-SEEEEEE-HHHHH
T ss_pred HHHHHhcCCceeeecchHHHHH
Confidence 999999998 999999987553
No 132
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0054 Score=55.86 Aligned_cols=60 Identities=28% Similarity=0.339 Sum_probs=45.4
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHH
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~ 429 (591)
.+-+-+|||-|||+.|.++ + ++|.+. .+++|+..-- .+++
T Consensus 2 ~v~vLfSGGKDSSLaA~iL--------~--------------klgyev--------------~LVTvnFGv~----d~~k 41 (198)
T COG2117 2 DVYVLFSGGKDSSLAALIL--------D--------------KLGYEV--------------ELVTVNFGVL----DSWK 41 (198)
T ss_pred ceEEEecCCCchhHHHHHH--------H--------------HhCCCc--------------EEEEEEeccc----cchh
Confidence 3567899999999977665 2 356542 4777877643 3567
Q ss_pred HHHHHHHHhCCceEEEecHH
Q 007749 430 LAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 430 ~A~~la~~lG~~~~~i~i~~ 449 (591)
-|++-|+.||.+|+++.++.
T Consensus 42 ~A~~tA~~lgF~h~vl~Ldr 61 (198)
T COG2117 42 YARETAAILGFPHEVLQLDR 61 (198)
T ss_pred hHHHHHHHhCCCcceeccCH
Confidence 88999999999999998864
No 133
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=96.39 E-value=0.067 Score=52.97 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=45.9
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhh
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t 427 (591)
.+.++++.|||.||++++.|+. ++. .. .+-.+++.+...-++|
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~-------~~~--------------~~----------------~i~vv~vDTg~~fpET 67 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLS-------SIS--------------EP----------------MIPVIFIDTLYHFPQT 67 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHH-------Hhh--------------CC----------------CCCEEEEeCCCCCHHH
Confidence 3579999999999999888873 221 01 2557888988889999
Q ss_pred HHHHHHHHHHhCCce
Q 007749 428 RMLAKKLADEIGSWH 442 (591)
Q Consensus 428 ~~~A~~la~~lG~~~ 442 (591)
.+-+.++++.+|...
T Consensus 68 ~e~~d~~~~~~~~~l 82 (226)
T TIGR02057 68 LTLKDELTKKYYQTL 82 (226)
T ss_pred HHHHHHHHHHhCCce
Confidence 999999999999443
No 134
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=96.33 E-value=0.011 Score=58.08 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHHHhCCceEEEecHH
Q 007749 425 QETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 425 ~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
....+.++..|+.||++++.+.+..
T Consensus 44 ~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 44 SPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred cCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 4466889999999999998887643
No 135
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.84 E-value=0.11 Score=52.61 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=51.6
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
..++++.|||.||++++.|+. ++. . .+..++..+..--++|.
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~-------k~~---------------~----------------~~~vif~DTg~~f~Et~ 81 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAA-------KAF---------------P----------------DFPVIFLDTGYHFPETY 81 (261)
T ss_pred CCeEEEecCchhHHHHHHHHH-------Hhc---------------C----------------CCcEEEEeCCCcCHHHH
Confidence 447999999999999988873 442 1 25578888888899999
Q ss_pred HHHHHHHHHhCCceEEEecHHH
Q 007749 429 MLAKKLADEIGSWHLDVSIDTV 450 (591)
Q Consensus 429 ~~A~~la~~lG~~~~~i~i~~~ 450 (591)
+-+.++++.+|++..+..-++.
T Consensus 82 ~~~d~~~~~~~~~l~~~~~~~~ 103 (261)
T COG0175 82 EFRDRLAEEYGLDLKVYRPDDE 103 (261)
T ss_pred HHHHHHHHHcCCeEEEecCccc
Confidence 9999999999988877766543
No 136
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=94.61 E-value=0.59 Score=50.82 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=43.2
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
..++||+|||=||++++.|+. +|+.. ++.+ .-.+.++-++..+..-.+.+.
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~-------~Al~~-----------lp~e-----------~~~k~v~VI~~DTgvE~Pe~~ 64 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIW-------NALAA-----------LPAE-----------QRTKKIHVISTDTLVENPIVA 64 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHH-------HHHHh-----------cccc-----------ccCcceEEEECcCCCccHHHH
Confidence 568999999999999998883 55421 1111 001147888888765555433
Q ss_pred -------HHHHHHHHHhCCceEEE
Q 007749 429 -------MLAKKLADEIGSWHLDV 445 (591)
Q Consensus 429 -------~~A~~la~~lG~~~~~i 445 (591)
+..+..|+..|.++.+.
T Consensus 65 ~~v~~~l~~i~~~a~~~~lpi~~~ 88 (447)
T TIGR03183 65 AWVNASLERMQEAAQDQGLPIEPH 88 (447)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEE
Confidence 34456778878776543
No 137
>PRK06850 hypothetical protein; Provisional
Probab=92.74 E-value=0.58 Score=51.51 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=49.7
Q ss_pred HHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhc
Q 007749 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (591)
Q Consensus 331 ~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (591)
....+...+++.... ....++||+|||-||++++.|+. +|+.. +..+ --.
T Consensus 18 ~~~~~i~~i~~~Y~~-~~~P~vV~fSGGKDStavL~Lv~-------~Al~~-----------lp~e-----------~r~ 67 (507)
T PRK06850 18 PIEELIEEIQELYCA-DNRPWVIGYSGGKDSTAVLQLVW-------NALAG-----------LPPE-----------KRT 67 (507)
T ss_pred HHHHHHHHHHHHHhc-CCCCeEEeCCCCchHHHHHHHHH-------HHHHh-----------cchh-----------ccC
Confidence 344444455553332 23568999999999999988884 55421 1110 001
Q ss_pred ceEEEEecCCCCCCHhhH-------HHHHHHHHHhCCceEE
Q 007749 411 RIFYTVFMGSENSSQETR-------MLAKKLADEIGSWHLD 444 (591)
Q Consensus 411 ~~v~~v~m~~~~ss~~t~-------~~A~~la~~lG~~~~~ 444 (591)
+.|+.++..+.--.+.+. +..+..|+..|+++.+
T Consensus 68 k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~glpi~~ 108 (507)
T PRK06850 68 KPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQGLPITP 108 (507)
T ss_pred CcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 147888887654455444 3444557778888754
No 138
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=92.71 E-value=0.37 Score=39.52 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=15.7
Q ss_pred EEEecCCChhhHHHHHHH
Q 007749 351 FLLPLSGGADSSSVAAIV 368 (591)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~ 368 (591)
+++++|||.||+.++.++
T Consensus 1 ilv~~sgg~dS~~~l~~~ 18 (86)
T cd01984 1 ILVALSGGLDSSVLLHLA 18 (86)
T ss_pred CEEEeeCCHHHHHHHHHH
Confidence 579999999999987776
No 139
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=92.20 E-value=0.46 Score=46.80 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhCCceEEEecH
Q 007749 427 TRMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 427 t~~~A~~la~~lG~~~~~i~i~ 448 (591)
..+..+..|+.||+++..+..+
T Consensus 46 ~~~~~~~qA~algipl~~~~~~ 67 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYTE 67 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeecC
Confidence 5577889999999999876653
No 140
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=89.79 E-value=0.7 Score=46.72 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=40.8
Q ss_pred CCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHh
Q 007749 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (591)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~ 426 (591)
+.+.+||+.|||+|+++.++-+ ++ .|.+ |+ +||..-.- .+
T Consensus 4 ~~~~vVLAySGgLDTscil~WL--------ke--------------qGye----------------Vi-ay~AnvGQ-~e 43 (412)
T KOG1706|consen 4 SKKSVVLAYSGGLDTSCILAWL--------KE--------------QGYE----------------VI-AYLANVGQ-KE 43 (412)
T ss_pred CCceEEEEecCCcCchhhhHHH--------Hh--------------cCce----------------EE-Eeeccccc-hh
Confidence 4477999999999999754322 22 3543 55 45654433 78
Q ss_pred hHHHHHHHHHHhCCceEE
Q 007749 427 TRMLAKKLADEIGSWHLD 444 (591)
Q Consensus 427 t~~~A~~la~~lG~~~~~ 444 (591)
+.+.|++-|..+|+.-..
T Consensus 44 dfe~ar~kAlk~Gakk~~ 61 (412)
T KOG1706|consen 44 DFEEARKKALKSGAKKVV 61 (412)
T ss_pred hHHHHHHhhhhcCceEEE
Confidence 899999999999988543
No 141
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=89.48 E-value=1.2 Score=43.28 Aligned_cols=64 Identities=22% Similarity=0.268 Sum_probs=41.8
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCC-----C
Q 007749 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS-----S 424 (591)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~s-----s 424 (591)
+++.-+|||-||..++..+ +.. |.+ .+..++|...+. .
T Consensus 2 k~~aL~SGGKDS~~Al~~a----------~~~------------G~e---------------V~~Ll~~~p~~~dS~m~H 44 (223)
T COG2102 2 KVIALYSGGKDSFYALYLA----------LEE------------GHE---------------VVYLLTVKPENGDSYMFH 44 (223)
T ss_pred cEEEEEecCcHHHHHHHHH----------HHc------------CCe---------------eEEEEEEecCCCCeeeee
Confidence 4667799999998866555 222 322 234444443222 1
Q ss_pred HhhHHHHHHHHHHhCCceEEEecHHH
Q 007749 425 QETRMLAKKLADEIGSWHLDVSIDTV 450 (591)
Q Consensus 425 ~~t~~~A~~la~~lG~~~~~i~i~~~ 450 (591)
-...+.+..+|+.+|+++.....+-.
T Consensus 45 ~~n~~~~~~~Ae~~gi~l~~~~~~g~ 70 (223)
T COG2102 45 TPNLELAELQAEAMGIPLVTFDTSGE 70 (223)
T ss_pred ccchHHHHHHHHhcCCceEEEecCcc
Confidence 23457789999999999998888763
No 142
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=87.39 E-value=0.72 Score=45.31 Aligned_cols=21 Identities=14% Similarity=0.204 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCceEEEecH
Q 007749 428 RMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~ 448 (591)
.+..+..|+.+|+++..+.++
T Consensus 47 ~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 47 IELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp GTCHHHHHHHHT--EEEEEE-
T ss_pred HHHHHHHHHHCCCCEEEEEcc
Confidence 566788899999999998886
No 143
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=85.43 E-value=1.7 Score=44.87 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=41.2
Q ss_pred hCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCH
Q 007749 346 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQ 425 (591)
Q Consensus 346 ~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~ 425 (591)
+.+..++|++|||-||++++-|+...+ ++ .+.. .++-+++.-...-.
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~a----r~--------------~~~~---------------~i~VlfiD~E~QYs 71 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVA----RE--------------NGRD---------------KISVLFIDWEAQYS 71 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHH----HH--------------hCCC---------------ceEEEEEcchhhhh
Confidence 457899999999999999988885321 22 2332 36777777666666
Q ss_pred hhHHHHHHHHHH
Q 007749 426 ETRMLAKKLADE 437 (591)
Q Consensus 426 ~t~~~A~~la~~ 437 (591)
.|.+-.+++-..
T Consensus 72 ~TidyV~em~~~ 83 (407)
T COG3969 72 CTIDYVQEMRES 83 (407)
T ss_pred hHHHHHHHHHhc
Confidence 777777766553
No 144
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=83.39 E-value=20 Score=34.34 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=30.9
Q ss_pred EEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEec
Q 007749 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSI 447 (591)
Q Consensus 413 v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i 447 (591)
+..+++.+...-++|.+-+.++++.+|++..++.-
T Consensus 19 ~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 19 VKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 56788999888999999999999999999888754
No 145
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=81.89 E-value=0.87 Score=48.47 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.5
Q ss_pred CCCcEEEecCCChhhHHHHHHH
Q 007749 347 GASGFLLPLSGGADSSSVAAIV 368 (591)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~ 368 (591)
.-..++|-+|||+||+++|.++
T Consensus 249 ~~s~VcVlfSGGvDs~vvA~l~ 270 (520)
T KOG0573|consen 249 HESNVCVLFSGGVDSTVVAVLA 270 (520)
T ss_pred ccCcEEEEecCCchHHHHHHHH
Confidence 3368999999999999999887
No 146
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=74.95 E-value=11 Score=38.74 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=46.9
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
+.+.+|-|||-||++.|..+ ++|... ..+... . -+..+.=....-.+.+.
T Consensus 52 e~v~igasGgkdstvlA~v~--------~~Ln~r----------~~~g~~------l------~Lls~degi~gyrd~sl 101 (347)
T KOG2840|consen 52 ERVAIGASGGKDSTVLAYVL--------DALNER----------HDYGLR------L------FLLSIDEGIRGYRDDSL 101 (347)
T ss_pred CccccccccchhHHHHHHHH--------HHhhhh----------cCCCce------e------eeeeccccccceeccHH
Confidence 56899999999999977654 665321 011100 0 12222222233344556
Q ss_pred HHHHHHHHHhCCceEEEecHHHHH
Q 007749 429 MLAKKLADEIGSWHLDVSIDTVVS 452 (591)
Q Consensus 429 ~~A~~la~~lG~~~~~i~i~~~~~ 452 (591)
...+......|++..+++..+++.
T Consensus 102 ~avkrn~~~~~lPL~ivs~~dl~~ 125 (347)
T KOG2840|consen 102 EAVKRNGVQYGLPLCIVSYKDLYG 125 (347)
T ss_pred HHHHHhhhhcCCceEEecHHHHhc
Confidence 667778888999999999999887
No 147
>PLN02309 5'-adenylylsulfate reductase
Probab=73.59 E-value=17 Score=39.89 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=29.3
Q ss_pred EEEEecCCCCCCHhhHHHHHHHHHHhCCceEEE
Q 007749 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDV 445 (591)
Q Consensus 413 v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i 445 (591)
+--+++.+...-++|.+.+.++++.+|++.+++
T Consensus 136 ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 136 FRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 446788999999999999999999999988777
No 148
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=72.89 E-value=18 Score=39.76 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=29.4
Q ss_pred EEEEecCCCCCCHhhHHHHHHHHHHhCCceEEE
Q 007749 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDV 445 (591)
Q Consensus 413 v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i 445 (591)
+--+++.+...-++|.+-+.++++.+|++.+++
T Consensus 141 ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 141 FRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 456888998999999999999999999988876
No 149
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=54.24 E-value=36 Score=34.41 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
+..++.+.+.++.|+.-|++.|+||... +.... ......+...+.+.++++.++++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~---~~~~~--~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYD---VYYEE--HDEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCcc---cccCc--CCHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3567778889999999999999987421 11111 11223445566778888777778887654
No 150
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.03 E-value=41 Score=33.91 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
+..++.+.+.++.|+.-|++.|++| |+............+...+.+.++++.++++|+.+.
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 150 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLA-----GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC-----CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4567888889999999999999986 221100001123344555667777777777888765
No 151
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.74 E-value=38 Score=34.29 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
+..++.+.+.++.|+.-|+..|+++ |+............+...+.++.+++.++++|+.+.+
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQLA-----GYDVYYEQANNETRRRFIDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-----CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 4567788899999999999999975 3321111111222333455677777777678876543
No 152
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.99 E-value=67 Score=32.24 Aligned_cols=63 Identities=22% Similarity=0.025 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
.+.+++.+.+.++.|+.-|++.|+++-.. .||... ..+..+...+.++.|++.++++|+.+.+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLTP----PNVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCCC----HHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 35678899999999999999998886432 333311 1233345556778888877778876643
No 153
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=39.34 E-value=1.1e+02 Score=30.42 Aligned_cols=64 Identities=13% Similarity=-0.088 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 17 DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 17 d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
+.+...+.+.+.++.|++-|+..|+.| +|+.+.+.. ..+..+...+.|.++++.+++.|+.+.+
T Consensus 79 ~~~~~~~~~~~~i~~a~~lga~~i~~~----~g~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 79 REEEFRDGVAAAIRYARALGNKKINCL----VGKTPAGFS-SEQIHATLVENLRYAANMLMKEDILLLI 142 (258)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEEC----CCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 345567778889999999999987653 344333221 2223344556677777776677876543
No 154
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=39.29 E-value=1.2e+02 Score=30.66 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
.+..++.+.+.++.|++-|++.+++.- |.... ...+.......+.+.++++.++++++.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~----g~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHP----GSYLG--QSKEEGLKRVIEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECC----CCCCC--CCHHHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 566788899999999999999988732 22211 112234455567788888887788887654
No 155
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=38.64 E-value=75 Score=32.51 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=43.6
Q ss_pred cccCCCChHHHHHHhCCCcEEEEecCCcccccchh----HH-------HHHHHHHHHHcCcEEEEEcCCCCCCCceeeec
Q 007749 175 EELFTPIPPHADLALNGVEVFMNASGSHHQLRKLD----YR-------IRAFISATHSRGGVYMYSNHQGCDGGRLYFDG 243 (591)
Q Consensus 175 ~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~----~r-------~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G 243 (591)
.|++.|+...+.......|+|+|.++... ..+.+ .. -.-+...+.+.|..+|+.+ .++||+|
T Consensus 34 ~Ditd~~~v~~~i~~~~PDvVIn~AAyt~-vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiS------TDyVFDG 106 (281)
T COG1091 34 LDITDPDAVLEVIRETRPDVVINAAAYTA-VDKAESEPELAFAVNATGAENLARAAAEVGARLVHIS------TDYVFDG 106 (281)
T ss_pred ccccChHHHHHHHHhhCCCEEEECccccc-cccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEee------cceEecC
Confidence 58999987777777778999999988542 11111 00 1224556778888888875 6789988
Q ss_pred cE
Q 007749 244 CS 245 (591)
Q Consensus 244 ~S 245 (591)
.-
T Consensus 107 ~~ 108 (281)
T COG1091 107 EK 108 (281)
T ss_pred CC
Confidence 65
No 156
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=37.96 E-value=2.9e+02 Score=31.53 Aligned_cols=39 Identities=33% Similarity=0.544 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCceEEEecHHHHH--------HHHHHhhhhhCCCCC
Q 007749 429 MLAKKLADEIGSWHLDVSIDTVVS--------AFLSLFQTLTGKRPC 467 (591)
Q Consensus 429 ~~A~~la~~lG~~~~~i~i~~~~~--------~~~~~~~~~~~~~~~ 467 (591)
.-|..+|.+||+++..|+-.+++. .+...|.++.+..|.
T Consensus 238 ~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPc 284 (802)
T KOG0733|consen 238 SLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPC 284 (802)
T ss_pred HHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCe
Confidence 468889999999999999888773 455667666555554
No 157
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=37.09 E-value=1.2e+02 Score=29.93 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=40.3
Q ss_pred HHHHHHhCCCcEEEEecCC--cccccch----------hHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-e
Q 007749 183 PHADLALNGVEVFMNASGS--HHQLRKL----------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-V 249 (591)
Q Consensus 183 ~~r~la~~Gadlil~psas--~~~~gk~----------~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p 249 (591)
..+.++.+|+|+|+.|=.+ .+..... ....+.++..|.+++++++.--.. ...++..| -+++++ |
T Consensus 22 ~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~~~~y-Ns~~~i~~ 99 (255)
T cd07581 22 LLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMFE-PAGDGRVY-NTLVVVGP 99 (255)
T ss_pred HHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEeee-eCCCCcEE-EeEEEECC
Confidence 3446678999999988432 2211110 123455777888888877653221 11111233 345556 9
Q ss_pred CCcEEEe
Q 007749 250 NGDMIAQ 256 (591)
Q Consensus 250 ~G~ila~ 256 (591)
+|+++..
T Consensus 100 ~G~i~~~ 106 (255)
T cd07581 100 DGEIIAV 106 (255)
T ss_pred CCcEEEE
Confidence 9998764
No 158
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=36.99 E-value=81 Score=31.09 Aligned_cols=77 Identities=21% Similarity=0.134 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEE-EcceeeeCCeeeEeEEEEeC
Q 007749 26 KESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS-FGMPVIKGSERYNCQVLCLN 104 (591)
Q Consensus 26 ~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii-vG~~~~~~~~lyNsa~vi~~ 104 (591)
.-+|.+|..-.+++++|-|-.- .++|++..+..+.+..||+. +++.+ |-.-...-...-+..+++++
T Consensus 144 RVAIARALaM~P~vmLFDEPTS--------ALDPElv~EVL~vm~~LA~e----GmTMivVTHEM~FAr~VadrviFmd~ 211 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTS--------ALDPELVGEVLDVMKDLAEE----GMTMIIVTHEMGFAREVADRVIFMDQ 211 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcc--------cCCHHHHHHHHHHHHHHHHc----CCeEEEEechhHHHHHhhheEEEeeC
Confidence 3467778888999999999542 25678888888889999874 55433 32211122345667788899
Q ss_pred CEEEEEEecc
Q 007749 105 RKIIMIRPKL 114 (591)
Q Consensus 105 G~il~~y~K~ 114 (591)
|+|+......
T Consensus 212 G~iie~g~p~ 221 (240)
T COG1126 212 GKIIEEGPPE 221 (240)
T ss_pred CEEEEecCHH
Confidence 9988776433
No 159
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=36.18 E-value=1.2e+02 Score=30.53 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=40.1
Q ss_pred HHHHHHhCCCcEEEEecC--Ccccccch-------------hHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEE
Q 007749 183 PHADLALNGVEVFMNASG--SHHQLRKL-------------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCV 247 (591)
Q Consensus 183 ~~r~la~~Gadlil~psa--s~~~~gk~-------------~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I 247 (591)
..+..+.+|||+|+.|=. ++|..... ....+.++..|.+++++++..-.. .+ ++..| -++++
T Consensus 24 ~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~-~~~~y-Ns~~~ 100 (279)
T TIGR03381 24 LVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSFFE-KA-GNAYY-NSLAM 100 (279)
T ss_pred HHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEeeee-cC-CCceE-EeEEE
Confidence 344567789999998842 33321110 123455777888988877643211 11 22233 34556
Q ss_pred E-eCCcEEEe
Q 007749 248 V-VNGDMIAQ 256 (591)
Q Consensus 248 ~-p~G~ila~ 256 (591)
+ |+|+++..
T Consensus 101 i~~~G~i~~~ 110 (279)
T TIGR03381 101 IDADGSVLGV 110 (279)
T ss_pred ECCCCCEEEE
Confidence 6 89998753
No 160
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=36.09 E-value=1.2e+02 Score=30.73 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=38.7
Q ss_pred HHHHhCCCcEEEEecC--Ccccccc-------------hhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-
Q 007749 185 ADLALNGVEVFMNASG--SHHQLRK-------------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV- 248 (591)
Q Consensus 185 r~la~~Gadlil~psa--s~~~~gk-------------~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~- 248 (591)
+..+.+|||+|+.|=. +++.... .......++..|.+++++++.. ..-...++..| -.++++
T Consensus 37 ~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g-~~~~~~~~~~y-Ns~~~i~ 114 (287)
T cd07568 37 REAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLILP-IYEKEQGGTLY-NTAAVID 114 (287)
T ss_pred HHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEEE-eEEEcCCCcEE-EEEEEEC
Confidence 4456689999999843 3332110 0012344778889999888752 11111122234 334555
Q ss_pred eCCcEEEe
Q 007749 249 VNGDMIAQ 256 (591)
Q Consensus 249 p~G~ila~ 256 (591)
|+|+++..
T Consensus 115 ~~G~i~~~ 122 (287)
T cd07568 115 ADGTYLGK 122 (287)
T ss_pred CCCcEeeE
Confidence 89998743
No 161
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=36.08 E-value=39 Score=31.90 Aligned_cols=63 Identities=19% Similarity=0.066 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 20 CNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 20 ~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
.-++.+.+.++.|+.-|++.++++=.. |............+...+.+.++++.++++|+.+.+
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIVVHSGR---YPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEEEECTT---ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCcc---cccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 338888889999999999999988211 111111112234455566777787777678876543
No 162
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=35.21 E-value=1.5e+02 Score=34.80 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=50.3
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCC---C-
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS---S- 424 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~s---s- 424 (591)
+.+++++||+..|.-+ +..-++++ +. +.. ..+++|...+.. +
T Consensus 249 e~ilvcI~~~~~~e~l---iR~a~RlA-~~--------------~~a----------------~~~av~v~~~~~~~~~~ 294 (890)
T COG2205 249 ERILVCISGSPGSEKL---IRRAARLA-SR--------------LHA----------------KWTAVYVETPELHRLSE 294 (890)
T ss_pred ceEEEEECCCCchHHH---HHHHHHHH-HH--------------hCC----------------CeEEEEEeccccccccH
Confidence 6799999999999764 33323322 11 222 378888876543 2
Q ss_pred --HhhHHHHHHHHHHhCCceEEEecHHHHHHHHH
Q 007749 425 --QETRMLAKKLADEIGSWHLDVSIDTVVSAFLS 456 (591)
Q Consensus 425 --~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~ 456 (591)
......+.+||+.||.+..++.-.++.+++.+
T Consensus 295 ~~~~~l~~~~~Lae~lGae~~~l~~~dv~~~i~~ 328 (890)
T COG2205 295 KEARRLHENLRLAEELGAEIVTLYGGDVAKAIAR 328 (890)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeCCcHHHHHHH
Confidence 23455688899999999999987777776544
No 163
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=35.06 E-value=1.1e+02 Score=31.20 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=36.1
Q ss_pred CCCcEEEEecC--Ccccccch--------------hHHHHHHHHHHHHcCcEEEEEcC-CCCCCCceeeeccEEEE-eCC
Q 007749 190 NGVEVFMNASG--SHHQLRKL--------------DYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV-VNG 251 (591)
Q Consensus 190 ~Gadlil~psa--s~~~~gk~--------------~~r~~l~~~~a~e~~~~~v~aN~-~G~~~~~~~f~G~S~I~-p~G 251 (591)
+|||+|+.|=. +.|..+.. ....+.++..|.+++++++.-.. ...+..+..| -.++++ |+|
T Consensus 41 ~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~y-Nsa~~i~~~G 119 (294)
T cd07582 41 LPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAANAYERDPDFPGLYF-NTAFIIDPSG 119 (294)
T ss_pred CCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEEeeeeecCCCCCcEE-EEEEEECCCC
Confidence 47999998832 22222111 01335677888998888765332 1111012334 345555 899
Q ss_pred cEEEe
Q 007749 252 DMIAQ 256 (591)
Q Consensus 252 ~ila~ 256 (591)
+++..
T Consensus 120 ~i~~~ 124 (294)
T cd07582 120 EIILR 124 (294)
T ss_pred cEEEE
Confidence 98864
No 164
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=33.50 E-value=78 Score=32.25 Aligned_cols=103 Identities=25% Similarity=0.234 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCcEEEecCCChhhHHHHH-----HHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcce
Q 007749 338 WLWDYLRRSGASGFLLPLSGGADSSSVAA-----IVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRI 412 (591)
Q Consensus 338 ~l~d~l~~~~~~~~~l~lSGG~DSa~~a~-----l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (591)
-|+.++++. .-+.||++|+.|...=+- ++..|-+.-.++|+.|.+.++ ..+..+--|.- +.|-.--
T Consensus 198 ~lk~fi~ey--~pvlIgVdGaAD~l~~~GykP~lIvGdp~~i~~~aLR~ga~vvl------pad~dGhApGl-eRiQdLG 268 (395)
T COG4825 198 SLKPFIKEY--QPVLIGVDGAADVLRKAGYKPQLIVGDPDQISTEALRCGAKVVL------PADADGHAPGL-ERIQDLG 268 (395)
T ss_pred HHHHHHHhh--CCEEEEccchHHHHHHcCCCcceeecCcchhhHHHHhcccceee------ccCCCCCCchH-HHHHhcC
Confidence 366777776 679999999999765321 121111111234433332221 11100001111 1222225
Q ss_pred EEEEecCCCCCCHhhHHHHHHHHHHhCCceE-----EEecHHHHH
Q 007749 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHL-----DVSIDTVVS 452 (591)
Q Consensus 413 v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~-----~i~i~~~~~ 452 (591)
+.+.+.|+.+||. +-|.-||..-|..|. ..++++.++
T Consensus 269 vgAmTFP~~gsst---DlAllLAd~hga~~lv~vG~~~~~~~ffe 310 (395)
T COG4825 269 VGAMTFPAAGSST---DLALLLADHHGAALLVTVGHRANIETFFE 310 (395)
T ss_pred cceeeccCCCchh---hHHHHHhhccCcceeEecCCcccHHHHHh
Confidence 7788999777763 568999999999873 346665554
No 165
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=33.29 E-value=2.3e+02 Score=27.98 Aligned_cols=60 Identities=12% Similarity=-0.103 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 21 NLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 21 N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
-.+.+.+.++.|++-|+..|.++ +|..+.+.. ..+..+...+.+.++++.+++.|+.+.+
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~----~g~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCL----AGKRPAGVS-PEEARATLVENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEC----cCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 35667778888999999988653 344333221 1222333445677777777678876544
No 166
>PLN02798 nitrilase
Probab=32.13 E-value=1.7e+02 Score=29.65 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHhCCCcEEEEecCCc---cccc--------chhHHHHHHHHHHHHcCcEEEEE--cCCCCCCCceeeeccEEEE-e
Q 007749 184 HADLALNGVEVFMNASGSH---HQLR--------KLDYRIRAFISATHSRGGVYMYS--NHQGCDGGRLYFDGCSCVV-V 249 (591)
Q Consensus 184 ~r~la~~Gadlil~psas~---~~~g--------k~~~r~~l~~~~a~e~~~~~v~a--N~~G~~~~~~~f~G~S~I~-p 249 (591)
.+..+.+|||||+.|=.+. +... ........++..|.+++++++.. .....+ ++..| -.++++ |
T Consensus 35 i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~~-~~~~y-Ns~~vi~~ 112 (286)
T PLN02798 35 AKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPD-DSHLY-NTHVLIDD 112 (286)
T ss_pred HHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccCC-CCceE-EEEEEECC
Confidence 3455678999999885421 1100 01123455677888998887632 111111 12233 345566 8
Q ss_pred CCcEEEe
Q 007749 250 NGDMIAQ 256 (591)
Q Consensus 250 ~G~ila~ 256 (591)
+|+++..
T Consensus 113 ~G~i~~~ 119 (286)
T PLN02798 113 SGEIRSS 119 (286)
T ss_pred CCCEEEE
Confidence 9998753
No 167
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=31.91 E-value=2e+02 Score=28.48 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=39.4
Q ss_pred HHHHHhCCCcEEEEecCC--cccccc----------hhHHHHHHHHHHHHcCcEEEEEcCCCCCC-CceeeeccEEEE-e
Q 007749 184 HADLALNGVEVFMNASGS--HHQLRK----------LDYRIRAFISATHSRGGVYMYSNHQGCDG-GRLYFDGCSCVV-V 249 (591)
Q Consensus 184 ~r~la~~Gadlil~psas--~~~~gk----------~~~r~~l~~~~a~e~~~~~v~aN~~G~~~-~~~~f~G~S~I~-p 249 (591)
.+..+.+|+|+|+.|=.+ ++.... .......++..|.+++++++.-...-... ++..| -+++++ |
T Consensus 24 i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~y-Ns~~~i~~ 102 (265)
T cd07572 24 IEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERDDDDGKVY-NTSLVFDP 102 (265)
T ss_pred HHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeeccccCCCCcEE-EEEEEECC
Confidence 345667899999988442 221100 01234557778888888776532211111 12233 345555 8
Q ss_pred CCcEEEe
Q 007749 250 NGDMIAQ 256 (591)
Q Consensus 250 ~G~ila~ 256 (591)
+|+++..
T Consensus 103 ~G~i~~~ 109 (265)
T cd07572 103 DGELVAR 109 (265)
T ss_pred CCeEEeE
Confidence 9998753
No 168
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=31.74 E-value=2.1e+02 Score=28.30 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=38.6
Q ss_pred HHHHHhCCCcEEEEecCC--cccccc------------hhHHHHHHHHHHHHcCcEEEEEcC-CCCCCCceeeeccEEEE
Q 007749 184 HADLALNGVEVFMNASGS--HHQLRK------------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV 248 (591)
Q Consensus 184 ~r~la~~Gadlil~psas--~~~~gk------------~~~r~~l~~~~a~e~~~~~v~aN~-~G~~~~~~~f~G~S~I~ 248 (591)
.+..+.+|+|+|+.|-.+ .+.... .....+.++..|.+++++++.-.. .... ....| -+.+++
T Consensus 25 i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~-~~~~~-Ns~~~i 102 (258)
T cd07584 25 CKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVCGFVEKGGV-PGKVY-NSAVVI 102 (258)
T ss_pred HHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEEeehcccCC-CCceE-EEEEEE
Confidence 335567899999988432 121110 001234577788888887765432 1111 11233 345556
Q ss_pred -eCCcEEEe
Q 007749 249 -VNGDMIAQ 256 (591)
Q Consensus 249 -p~G~ila~ 256 (591)
|+|+++..
T Consensus 103 ~~~G~i~~~ 111 (258)
T cd07584 103 DPEGESLGV 111 (258)
T ss_pred CCCCCEEeE
Confidence 89988753
No 169
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=28.98 E-value=2.1e+02 Score=28.10 Aligned_cols=71 Identities=11% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHhCCCcEEEEecCC--cccccc---------hhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eC
Q 007749 183 PHADLALNGVEVFMNASGS--HHQLRK---------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VN 250 (591)
Q Consensus 183 ~~r~la~~Gadlil~psas--~~~~gk---------~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~ 250 (591)
..+.++.+|+|+++.|-.+ .+..+. .......++..|.+++++++.--.. .. ++..| -.++++ |+
T Consensus 24 ~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~-~~-~~~~y-Ns~~~i~~~ 100 (254)
T cd07576 24 AAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPE-RA-GGAVY-NAAVLIDED 100 (254)
T ss_pred HHHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEeccc-cC-CCceE-EEEEEECCC
Confidence 3445677899999988432 221110 1123455677888888877654221 11 12233 334555 89
Q ss_pred CcEEEe
Q 007749 251 GDMIAQ 256 (591)
Q Consensus 251 G~ila~ 256 (591)
|+++..
T Consensus 101 G~i~~~ 106 (254)
T cd07576 101 GTVLAN 106 (254)
T ss_pred CCEeeE
Confidence 997653
No 170
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.02 E-value=2.2e+02 Score=27.44 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=46.6
Q ss_pred HHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEEcceeeeCCeeeEeEEEEeCC
Q 007749 26 KESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNR 105 (591)
Q Consensus 26 ~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iivG~~~~~~~~lyNsa~vi~~G 105 (591)
...|.+|..-.+++++|-|-.- .+++++..+....+..||++ ....++|-.-...-...-|-.+++++|
T Consensus 160 R~aIARaLameP~vmLFDEPTS--------ALDPElVgEVLkv~~~LAeE---grTMv~VTHEM~FAR~Vss~v~fLh~G 228 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTS--------ALDPELVGEVLKVMQDLAEE---GRTMVVVTHEMGFARDVSSHVIFLHQG 228 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcc--------cCCHHHHHHHHHHHHHHHHh---CCeEEEEeeehhHHHhhhhheEEeecc
Confidence 4456777777889999988542 24677888888888899886 344555543222223345666677788
Q ss_pred EE
Q 007749 106 KI 107 (591)
Q Consensus 106 ~i 107 (591)
.|
T Consensus 229 ~i 230 (256)
T COG4598 229 KI 230 (256)
T ss_pred ee
Confidence 76
No 171
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=27.09 E-value=2.6e+02 Score=28.68 Aligned_cols=66 Identities=6% Similarity=0.038 Sum_probs=36.0
Q ss_pred CCCcEEEEecC--Ccccccch------------hHHHHHHHHHHHHcCcEEEEEcC-CCCCCCceeeeccEEEE-eCCcE
Q 007749 190 NGVEVFMNASG--SHHQLRKL------------DYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV-VNGDM 253 (591)
Q Consensus 190 ~Gadlil~psa--s~~~~gk~------------~~r~~l~~~~a~e~~~~~v~aN~-~G~~~~~~~f~G~S~I~-p~G~i 253 (591)
+|+|||+.|=. +.|..... ....+.++..|.+++++++.-.. ....+....| -+++++ |+|++
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~e~~~~~~~~~y-Nta~vi~~~G~i 113 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPEKVDESSPKLY-NSALVVDPEGEV 113 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeeeEecCCCCCceE-EEEEEEcCCCeE
Confidence 79999999843 22322110 01234456778888888765322 1111001233 456666 89988
Q ss_pred EEe
Q 007749 254 IAQ 256 (591)
Q Consensus 254 la~ 256 (591)
++.
T Consensus 114 i~~ 116 (295)
T cd07566 114 VFN 116 (295)
T ss_pred EEE
Confidence 754
No 172
>PLN00202 beta-ureidopropionase
Probab=26.79 E-value=2.1e+02 Score=30.92 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=40.3
Q ss_pred HHHHhCCCcEEEEecC--Cccccc---c-h--------hHHHHHHHHHHHHcCcEEEEE-cCCCCCCCceeeeccEEEE-
Q 007749 185 ADLALNGVEVFMNASG--SHHQLR---K-L--------DYRIRAFISATHSRGGVYMYS-NHQGCDGGRLYFDGCSCVV- 248 (591)
Q Consensus 185 r~la~~Gadlil~psa--s~~~~g---k-~--------~~r~~l~~~~a~e~~~~~v~a-N~~G~~~~~~~f~G~S~I~- 248 (591)
+.++.+|||+|+.|=. .++.+. + . ....+.++..|++++++++.- .-.....++.+| -.++++
T Consensus 120 ~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~y-NSa~vI~ 198 (405)
T PLN00202 120 DAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSPILERDVNHGETLW-NTAVVIG 198 (405)
T ss_pred HHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEEeeeeecCCCCcEE-EEEEEEC
Confidence 3456789999999853 343210 0 0 012456778889999988742 101111012233 455666
Q ss_pred eCCcEEEe
Q 007749 249 VNGDMIAQ 256 (591)
Q Consensus 249 p~G~ila~ 256 (591)
|+|+++..
T Consensus 199 ~~G~iig~ 206 (405)
T PLN00202 199 NNGNIIGK 206 (405)
T ss_pred CCCcEEEE
Confidence 99998754
No 173
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.22 E-value=1.6e+02 Score=24.61 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=31.4
Q ss_pred HhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCC
Q 007749 188 ALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCD 235 (591)
Q Consensus 188 a~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~ 235 (591)
..+.||++++++..-- . .-...++..|.+++.++++++..|.+
T Consensus 45 ~i~~aD~VIv~t~~vs----H-~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 45 KIKKADLVIVFTDYVS----H-NAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred hcCCCCEEEEEeCCcC----h-HHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 4578999999976421 1 12345788999999999999976643
No 174
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=25.68 E-value=81 Score=31.52 Aligned_cols=33 Identities=18% Similarity=0.055 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcC
Q 007749 16 LDFDCNLKNIKESIGRAKEAGAVIRLGPELEIT 48 (591)
Q Consensus 16 ~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~lt 48 (591)
++...+.+.+.+.++...++|..+++|||-.-+
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs 151 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRS 151 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 455666667777777777778999999998655
No 175
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=24.82 E-value=79 Score=31.50 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=24.5
Q ss_pred CCCHHHHHhchhHHHHHHHHHhCCC--cEEEecCCC
Q 007749 325 HSPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGG 358 (591)
Q Consensus 325 ~~~~~e~~~~~~~~l~d~l~~~~~~--~~~l~lSGG 358 (591)
|...+|+..+++.++.+-..+.=.+ .|-|+||||
T Consensus 14 ~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGG 49 (252)
T KOG3147|consen 14 FSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGG 49 (252)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 5566788888887776655554333 499999999
No 176
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=24.71 E-value=2.5e+02 Score=28.19 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=39.4
Q ss_pred HHHHHHhCCCcEEEEecC--Ccccccc-------------hhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEE
Q 007749 183 PHADLALNGVEVFMNASG--SHHQLRK-------------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCV 247 (591)
Q Consensus 183 ~~r~la~~Gadlil~psa--s~~~~gk-------------~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I 247 (591)
..+.++.+|||+|+.|=. +++..+. .......+...|.+++++++.....-.+ +. .+.-..++
T Consensus 24 ~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~~~~~~-~~-~~yNs~~v 101 (284)
T cd07573 24 LVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSLFEKRG-NG-LYYNSAVV 101 (284)
T ss_pred HHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecceeeCC-CC-cEEEEEEE
Confidence 344567789999998843 3322111 0122345677888888777653211111 11 22344556
Q ss_pred E-eCCcEEEe
Q 007749 248 V-VNGDMIAQ 256 (591)
Q Consensus 248 ~-p~G~ila~ 256 (591)
+ |+|+++..
T Consensus 102 ~~~~G~i~~~ 111 (284)
T cd07573 102 IDADGSLLGV 111 (284)
T ss_pred ECCCCCEEeE
Confidence 6 89988754
No 177
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=24.53 E-value=78 Score=31.45 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=28.8
Q ss_pred CCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHH
Q 007749 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSS 363 (591)
Q Consensus 326 ~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~ 363 (591)
...+|+....+..+.+++.+. +.+.|+||||-.-..
T Consensus 7 ~~~~e~~~~~a~~i~~~i~~~--~~~~l~lsgG~tp~~ 42 (239)
T PRK12358 7 KDYEEMSRVAAHHLLGYMSKT--KRVNLAITAGSTPKG 42 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCeEEEECCCCCHHH
Confidence 345788888888999999885 479999999965544
No 178
>PRK12677 xylose isomerase; Provisional
Probab=24.48 E-value=3.3e+02 Score=29.23 Aligned_cols=77 Identities=17% Similarity=0.031 Sum_probs=43.6
Q ss_pred eEEEEEecCCCC-----------CCH---HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc---chhhHHHH
Q 007749 4 LKVATCNLNNWA-----------LDF---DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE---LDTVTHAW 66 (591)
Q Consensus 4 ~kVAl~Q~~~~~-----------~d~---~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~---~~~~~~~~ 66 (591)
|+|.++.+|... .|. +..++.+++.|+.|++-|++.|++- +|+...+...+ ....+...
T Consensus 81 L~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~----~G~~g~~~~~~~d~~~a~~~~~ 156 (384)
T PRK12677 81 LVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMW----GGREGAEYDAAKDVRAALDRYR 156 (384)
T ss_pred CeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEe----eCCCCccCcccCCHHHHHHHHH
Confidence 677777665311 122 3457778899999999999855542 34332221111 12234445
Q ss_pred HHHHHHHhcccC--CCeEEE
Q 007749 67 ECLKDLLLGDWT--DGILCS 84 (591)
Q Consensus 67 ~~l~~la~~~~~--~~i~ii 84 (591)
+.|..+++.+++ +++.+.
T Consensus 157 eaL~~l~~~A~~~G~gV~la 176 (384)
T PRK12677 157 EAIDLLAAYVKDQGYDLRFA 176 (384)
T ss_pred HHHHHHHHHHHhcCCCcEEE
Confidence 677788777655 345543
No 179
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=24.41 E-value=90 Score=30.87 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=21.1
Q ss_pred CHHHHHhchhHHHHHHHHH--hCCCcEEEecCCCh
Q 007749 327 PEEEIAFGPGCWLWDYLRR--SGASGFLLPLSGGA 359 (591)
Q Consensus 327 ~~~e~~~~~~~~l~d~l~~--~~~~~~~l~lSGG~ 359 (591)
..+++..+++..+.+.+++ ...+.+.|+||||-
T Consensus 4 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGGs 38 (233)
T TIGR01198 4 NSAELAEALAERIATKLQTALAERGQFSLALSGGR 38 (233)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCc
Confidence 4456666666665555544 12357999999994
No 180
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=24.36 E-value=5e+02 Score=25.64 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=41.8
Q ss_pred eEEeCCcceeEeeecccCCC----------------------------Ch---HHHHHHhCCCcEEEEecCCcccccch-
Q 007749 161 FIQFLDTAVAAEICEELFTP----------------------------IP---PHADLALNGVEVFMNASGSHHQLRKL- 208 (591)
Q Consensus 161 v~~~~~~~iGv~IC~D~~~p----------------------------e~---~~r~la~~Gadlil~psas~~~~gk~- 208 (591)
+++.+|.|||++-+.+.... +. ..+. +.+++|++++..-|..+....
T Consensus 123 i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-~r~~~D~vIv~~HwG~e~~~~p 201 (250)
T PF09587_consen 123 IIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIRE-ARKKADVVIVSLHWGIEYENYP 201 (250)
T ss_pred EEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHH-HhcCCCEEEEEeccCCCCCCCC
Confidence 78899999999887544310 00 1112 347899999987775332211
Q ss_pred hHHHHHHHHHHHHcCcEEEEEcCC
Q 007749 209 DYRIRAFISATHSRGGVYMYSNHQ 232 (591)
Q Consensus 209 ~~r~~l~~~~a~e~~~~~v~aN~~ 232 (591)
..+.+-+..+..+.|.-+|..+..
T Consensus 202 ~~~q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 202 TPEQRELARALIDAGADIIIGHHP 225 (250)
T ss_pred CHHHHHHHHHHHHcCCCEEEeCCC
Confidence 223333555566677777766653
No 181
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=24.18 E-value=2.6e+02 Score=28.85 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCcEEEE
Q 007749 212 IRAFISATHSRGGVYMY 228 (591)
Q Consensus 212 ~~l~~~~a~e~~~~~v~ 228 (591)
.+.++..|++++++++.
T Consensus 90 ~~~l~~lAr~~~i~Iv~ 106 (299)
T cd07567 90 LQRLSCAARENSIYVVA 106 (299)
T ss_pred HHHHHHHHHHhCeEEEe
Confidence 45577888899998875
No 182
>PRK10490 sensor protein KdpD; Provisional
Probab=24.12 E-value=4.8e+02 Score=31.45 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=30.7
Q ss_pred EEEEecCCCCC---CHh---hHHHHHHHHHHhCCceEEEecHHHHHHHHHHh
Q 007749 413 FYTVFMGSENS---SQE---TRMLAKKLADEIGSWHLDVSIDTVVSAFLSLF 458 (591)
Q Consensus 413 v~~v~m~~~~s---s~~---t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~ 458 (591)
++++|.-+... +.. ...+..+||+.||.+..++.-+++.+.+.+.-
T Consensus 281 ~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~~i~~~A 332 (895)
T PRK10490 281 WHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVLRYA 332 (895)
T ss_pred EEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHH
Confidence 78888865422 222 22345579999999998887777776665433
No 183
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=23.85 E-value=86 Score=31.26 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=27.1
Q ss_pred CCCHHHHHhchhHHHHHHHHHhCCC--cEEEecCCC
Q 007749 325 HSPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGG 358 (591)
Q Consensus 325 ~~~~~e~~~~~~~~l~d~l~~~~~~--~~~l~lSGG 358 (591)
+...+++..+.+..+.+++.+.-.. .+.|+||||
T Consensus 6 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgG 41 (238)
T COG0363 6 FEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGG 41 (238)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCC
Confidence 4456788888888899998886433 699999999
No 184
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=22.50 E-value=2.5e+02 Score=24.31 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=18.0
Q ss_pred EEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 413 v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
|+..-.+.....+.+...-++.|+.+|+.+..+++..
T Consensus 31 VInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~ 67 (110)
T PF04273_consen 31 VINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG 67 (110)
T ss_dssp EEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC
Confidence 4444333333334455556778999999999998864
No 185
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=22.00 E-value=94 Score=30.74 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=25.8
Q ss_pred CCHHHHHhchhHHHHHHHHHhCCCcEEEecCCCh
Q 007749 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGA 359 (591)
Q Consensus 326 ~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~ 359 (591)
...+++..+++..|.+.+++. ..+.|+||||-
T Consensus 7 ~~~~~~~~~~a~~i~~~i~~~--~~~~l~lsgGs 38 (232)
T PRK09762 7 ENYTALSERASEYLLAVIRSK--PDAVICLATGA 38 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHHC--CCeEEEECCCC
Confidence 445788888888888888875 47899999994
No 186
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.60 E-value=4.8e+02 Score=27.95 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEE-EcCCCCcCCCCCCcccc---cchhhHHHHHHHHHHHhcccCC--CeEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIR-LGPELEITGYGCEDHFL---ELDTVTHAWECLKDLLLGDWTD--GILCS 84 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlv-vfPEl~ltGy~~~d~~~---~~~~~~~~~~~l~~la~~~~~~--~i~ii 84 (591)
+..++.+++.|+-|++-|+..| ++| |+...+... .....+...+.|.++++.+++. ++.+.
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~-----G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~la 177 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWG-----GREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFA 177 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcc-----CCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 5667888889999999999755 444 332222111 1223344566777787766554 45543
No 187
>PRK09989 hypothetical protein; Provisional
Probab=21.50 E-value=2.5e+02 Score=27.83 Aligned_cols=61 Identities=8% Similarity=-0.232 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEE-cCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 18 FDCNLKNIKESIGRAKEAGAVIRL-GPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadlvv-fPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
.+...+.+.+.++.|++-|+..|+ +| |+.+... ......+...+.|.++++.+++.++.+.
T Consensus 80 ~~~~~~~l~~~i~~A~~lg~~~v~v~~-----g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 141 (258)
T PRK09989 80 EHEARADIDLALEYALALNCEQVHVMA-----GVVPAGE-DAERYRAVFIDNLRYAADRFAPHGKRIL 141 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCcCEEEECc-----cCCCCCC-CHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 344566778888888898998663 44 3332111 1122234455677777777767787654
No 188
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=21.19 E-value=3.4e+02 Score=26.40 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHhCCCcEEEEecCC--cccccc-----------hhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-e
Q 007749 184 HADLALNGVEVFMNASGS--HHQLRK-----------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-V 249 (591)
Q Consensus 184 ~r~la~~Gadlil~psas--~~~~gk-----------~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p 249 (591)
.+..+.+|+|+|+.|-.+ .+.... .....+.++..|.+++++++.-...- . ++..| -.++++ |
T Consensus 24 i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~~-~-~~~~~-N~~~~i~~ 100 (253)
T cd07197 24 IKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIAEK-D-GDKLY-NTAVVIDP 100 (253)
T ss_pred HHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeEEc-c-CCceE-EEEEEECC
Confidence 345567899999988432 121110 12345567778888888776432211 1 11223 344555 8
Q ss_pred CCcEEE
Q 007749 250 NGDMIA 255 (591)
Q Consensus 250 ~G~ila 255 (591)
+|+++.
T Consensus 101 ~G~i~~ 106 (253)
T cd07197 101 DGEIIG 106 (253)
T ss_pred CCeEEE
Confidence 898664
No 189
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=20.84 E-value=3.8e+02 Score=26.25 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=38.4
Q ss_pred HHHHHhCCCcEEEEecCC--cccccc--------hhHHHHHHHHHHHHcCcEEEEEcC-CCCCCCceeeeccEEEE-eCC
Q 007749 184 HADLALNGVEVFMNASGS--HHQLRK--------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV-VNG 251 (591)
Q Consensus 184 ~r~la~~Gadlil~psas--~~~~gk--------~~~r~~l~~~~a~e~~~~~v~aN~-~G~~~~~~~f~G~S~I~-p~G 251 (591)
....+.+|+|+|+.|=.+ .+.... .....+.++..|.+++++++.-.. .-. ++..| -+++++ |+|
T Consensus 25 i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~--~~~~y-Ns~~~i~~~G 101 (253)
T cd07583 25 IEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVAEKE--GGKLY-NTAYVIDPDG 101 (253)
T ss_pred HHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEEecC--CCcEE-EEEEEECCCC
Confidence 345567899999998432 121111 012345577788888887764221 111 11233 344555 899
Q ss_pred cEEEe
Q 007749 252 DMIAQ 256 (591)
Q Consensus 252 ~ila~ 256 (591)
+++..
T Consensus 102 ~i~~~ 106 (253)
T cd07583 102 ELIAT 106 (253)
T ss_pred cEEEE
Confidence 88753
No 190
>PLN02747 N-carbamolyputrescine amidase
Probab=20.61 E-value=2.5e+02 Score=28.55 Aligned_cols=71 Identities=8% Similarity=-0.012 Sum_probs=39.0
Q ss_pred HHHHHHhCCCcEEEEecCC--ccccc----c---------hhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEE
Q 007749 183 PHADLALNGVEVFMNASGS--HHQLR----K---------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCV 247 (591)
Q Consensus 183 ~~r~la~~Gadlil~psas--~~~~g----k---------~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I 247 (591)
..+..+..|||+|+.|=.+ ++... . .......+...|.+++++++..- .... +...| -..++
T Consensus 30 ~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~-~~~~-~~~~y-Ns~~~ 106 (296)
T PLN02747 30 LVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSF-FEEA-NNAHY-NSIAI 106 (296)
T ss_pred HHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeee-eecC-CCceE-EEEEE
Confidence 3445677899999988432 22110 0 01123447778888888776421 1111 12233 34555
Q ss_pred E-eCCcEEEe
Q 007749 248 V-VNGDMIAQ 256 (591)
Q Consensus 248 ~-p~G~ila~ 256 (591)
+ |+|++++.
T Consensus 107 i~~~G~i~~~ 116 (296)
T PLN02747 107 IDADGTDLGL 116 (296)
T ss_pred ECCCCCCcce
Confidence 6 89998754
No 191
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=20.21 E-value=3.1e+02 Score=29.12 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=39.1
Q ss_pred HHHHhCCCcEEEEecCC--cccc--c-c--h---------hHHHHHHHHHHHHcCcEEEEEcC-CCCCCCceeeeccEEE
Q 007749 185 ADLALNGVEVFMNASGS--HHQL--R-K--L---------DYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCV 247 (591)
Q Consensus 185 r~la~~Gadlil~psas--~~~~--g-k--~---------~~r~~l~~~~a~e~~~~~v~aN~-~G~~~~~~~f~G~S~I 247 (591)
+..+.+||+||+.|=.+ +|.+ . + . ....+.++..|.+++++++..-. .....++..| -.+++
T Consensus 97 ~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~y-Nta~v 175 (363)
T cd07587 97 EAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSPILERDEEHGDTIW-NTAVV 175 (363)
T ss_pred HHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEEeeeeeecCCCCcEE-EEEEE
Confidence 35567899999988433 2211 0 0 0 01234577889999998864211 1110012344 34555
Q ss_pred E-eCCcEEEe
Q 007749 248 V-VNGDMIAQ 256 (591)
Q Consensus 248 ~-p~G~ila~ 256 (591)
+ |+|+++..
T Consensus 176 i~~~G~ilg~ 185 (363)
T cd07587 176 ISNSGNVLGK 185 (363)
T ss_pred ECCCCCEEee
Confidence 5 89998854
Done!