Query 007749
Match_columns 591
No_of_seqs 418 out of 3020
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 09:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ilv_A Glutamine-dependent NAD 100.0 1E-103 5E-108 884.8 51.3 524 1-589 3-531 (634)
2 4f4h_A Glutamine dependent NAD 100.0 1E-100 3E-105 849.4 50.1 459 3-589 6-486 (565)
3 3sdb_A Glutamine-dependent NAD 100.0 7.2E-94 2.4E-98 809.4 46.8 527 2-589 11-561 (680)
4 3n05_A NH(3)-dependent NAD(+) 100.0 5.7E-86 1.9E-90 738.5 45.7 481 1-589 1-507 (590)
5 3p8k_A Hydrolase, carbon-nitro 100.0 6.2E-47 2.1E-51 386.0 27.5 253 1-290 18-275 (281)
6 3ivz_A Nitrilase; alpha-beta s 100.0 1.6E-46 5.6E-51 379.2 24.3 246 3-290 1-255 (262)
7 3hkx_A Amidase; alpha-beta-BET 100.0 6.6E-47 2.3E-51 386.2 20.3 250 2-289 19-273 (283)
8 2e11_A Hydrolase; dimethylarse 100.0 1E-45 3.5E-50 374.2 22.5 250 1-289 1-258 (266)
9 2w1v_A Nitrilase-2, nitrilase 100.0 1.7E-45 5.8E-50 374.6 23.6 255 1-290 1-264 (276)
10 1f89_A 32.5 kDa protein YLR351 100.0 5.5E-44 1.9E-48 366.2 21.8 253 3-289 10-279 (291)
11 1uf5_A N-carbamyl-D-amino acid 100.0 5.4E-44 1.8E-48 368.3 21.7 258 2-289 2-291 (303)
12 2vhh_A CG3027-PA; hydrolase; 2 100.0 9.1E-43 3.1E-47 371.9 23.1 256 2-289 71-360 (405)
13 3q4g_A NH(3)-dependent NAD(+) 100.0 1.3E-41 4.5E-46 342.4 20.0 212 325-588 18-234 (279)
14 2uxy_A Aliphatic amidase; nitr 100.0 1.2E-41 4E-46 356.1 19.3 242 2-283 11-269 (341)
15 1ems_A Nitfhit, NIT-fragIle hi 100.0 2.6E-41 9E-46 365.9 22.0 254 1-289 12-279 (440)
16 2dyu_A Formamidase; AMIF, CEK, 100.0 2.3E-41 7.9E-46 353.0 20.6 246 3-287 13-273 (334)
17 3dpi_A NAD+ synthetase; ssgcid 100.0 3.6E-39 1.2E-43 324.5 15.8 210 325-588 24-234 (285)
18 1wxi_A NH(3)-dependent NAD(+) 100.0 2.3E-37 8E-42 312.7 20.5 207 325-588 17-225 (275)
19 3fiu_A NH(3)-dependent NAD(+) 100.0 4.6E-37 1.6E-41 306.3 18.8 196 328-588 9-204 (249)
20 1kqp_A NAD+ synthase, NH(3)-de 100.0 1.6E-36 5.5E-41 306.5 19.7 206 325-588 16-222 (271)
21 3p52_A NH(3)-dependent NAD(+) 100.0 4.5E-36 1.5E-40 299.0 17.3 191 327-588 5-195 (249)
22 1xng_A NH(3)-dependent NAD(+) 100.0 1.5E-31 5.3E-36 270.2 19.1 190 328-588 5-194 (268)
23 2e18_A NH(3)-dependent NAD(+) 100.0 9.4E-30 3.2E-34 255.7 17.8 186 328-588 6-191 (257)
24 2vxo_A GMP synthase [glutamine 99.7 9.8E-19 3.4E-23 196.8 8.9 209 328-588 223-457 (697)
25 1gpm_A GMP synthetase, XMP ami 99.6 8.6E-15 2.9E-19 160.9 12.1 177 329-576 211-409 (525)
26 2hma_A Probable tRNA (5-methyl 99.5 1.6E-14 5.4E-19 152.0 10.9 169 343-579 4-206 (376)
27 2dpl_A GMP synthetase, GMP syn 99.5 3.1E-13 1.1E-17 138.5 12.6 178 329-576 4-194 (308)
28 2der_A TRNA-specific 2-thiouri 99.4 3.2E-13 1.1E-17 142.1 10.6 165 348-579 17-214 (380)
29 3uow_A GMP synthetase; structu 99.4 1.2E-12 4E-17 144.5 13.8 168 341-576 247-440 (556)
30 2ywb_A GMP synthase [glutamine 99.4 3.8E-12 1.3E-16 139.2 16.5 176 329-576 193-387 (503)
31 3tqi_A GMP synthase [glutamine 99.3 3E-12 1E-16 140.6 11.8 176 330-576 215-411 (527)
32 3bl5_A Queuosine biosynthesis 99.3 1.9E-12 6.5E-17 126.0 7.1 164 348-575 3-188 (219)
33 2pg3_A Queuosine biosynthesis 99.3 6.8E-12 2.3E-16 123.4 9.7 161 347-562 1-181 (232)
34 2c5s_A THII, probable thiamine 99.2 2.4E-11 8.4E-16 129.5 11.0 157 349-577 188-356 (413)
35 1vl2_A Argininosuccinate synth 99.0 6E-10 2.1E-14 117.3 10.5 63 349-451 15-78 (421)
36 1kor_A Argininosuccinate synth 99.0 8E-10 2.8E-14 116.8 10.6 151 349-562 1-164 (400)
37 3k32_A Uncharacterized protein 98.9 8.2E-10 2.8E-14 106.2 6.9 137 347-551 5-150 (203)
38 1wy5_A TILS, hypothetical UPF0 98.9 9.1E-09 3.1E-13 105.8 12.7 147 348-561 24-187 (317)
39 2nz2_A Argininosuccinate synth 98.9 5.3E-09 1.8E-13 110.8 11.2 149 349-561 6-171 (413)
40 1sur_A PAPS reductase; assimil 98.8 2.2E-08 7.6E-13 97.0 11.5 72 339-449 36-107 (215)
41 1k92_A Argininosuccinate synth 98.8 1.9E-08 6.5E-13 107.0 10.6 65 349-451 11-76 (455)
42 3a2k_A TRNA(Ile)-lysidine synt 98.7 1.3E-07 4.5E-12 102.2 14.6 155 340-561 6-185 (464)
43 2o8v_A Phosphoadenosine phosph 98.6 1.6E-07 5.5E-12 93.2 11.2 63 349-449 46-108 (252)
44 1ni5_A Putative cell cycle pro 98.5 1.2E-06 4E-11 93.9 14.9 78 336-448 3-82 (433)
45 1jgt_A Beta-lactam synthetase; 98.3 2.3E-06 7.7E-11 93.6 12.8 83 327-449 218-302 (513)
46 1vbk_A Hypothetical protein PH 98.3 3.8E-07 1.3E-11 93.0 5.8 61 349-451 180-248 (307)
47 1q15_A CARA; CMPR, (2S,5S)-5-c 98.3 2E-06 6.9E-11 93.8 11.0 82 328-449 216-299 (503)
48 1ct9_A Asparagine synthetase B 98.2 5E-06 1.7E-10 91.7 12.5 93 328-449 208-301 (553)
49 2oq2_A Phosphoadenosine phosph 98.2 1.2E-05 4.2E-10 80.0 12.2 73 339-448 34-110 (261)
50 1zun_A Sulfate adenylyltransfe 98.1 3.8E-05 1.3E-09 78.8 14.2 77 337-449 37-113 (325)
51 2wsi_A FAD synthetase; transfe 98.0 4.1E-05 1.4E-09 77.9 13.4 92 339-448 42-137 (306)
52 2goy_A Adenosine phosphosulfat 97.9 0.0001 3.5E-09 73.8 14.4 71 339-449 46-116 (275)
53 3rjz_A N-type ATP pyrophosphat 97.8 1.9E-05 6.5E-10 76.9 5.8 66 347-450 3-74 (237)
54 3fwk_A FMN adenylyltransferase 95.2 0.04 1.4E-06 55.3 8.0 92 338-446 46-140 (308)
55 1k77_A EC1530, hypothetical pr 66.1 28 0.00096 32.8 9.9 63 18-85 80-142 (260)
56 3tva_A Xylose isomerase domain 64.9 16 0.00054 35.4 7.9 61 18-85 97-157 (290)
57 3ngf_A AP endonuclease, family 64.7 26 0.0009 33.4 9.5 63 17-85 87-149 (269)
58 3obe_A Sugar phosphate isomera 63.3 20 0.00067 35.4 8.4 74 4-85 90-168 (305)
59 3dx5_A Uncharacterized protein 62.9 18 0.00062 34.8 8.0 77 4-85 62-141 (286)
60 3qc0_A Sugar isomerase; TIM ba 53.7 13 0.00044 35.6 4.9 62 19-84 79-140 (275)
61 3cqj_A L-ribulose-5-phosphate 51.4 21 0.00072 34.6 6.2 60 19-84 104-164 (295)
62 3kws_A Putative sugar isomeras 49.4 32 0.0011 33.1 7.1 63 19-85 100-164 (287)
63 3bdk_A D-mannonate dehydratase 45.8 59 0.002 33.4 8.6 42 4-45 78-126 (386)
64 1i60_A IOLI protein; beta barr 44.7 35 0.0012 32.4 6.5 62 19-85 80-141 (278)
65 3l23_A Sugar phosphate isomera 44.1 67 0.0023 31.3 8.6 60 18-85 103-164 (303)
66 2hk0_A D-psicose 3-epimerase; 43.0 53 0.0018 32.0 7.7 67 19-85 103-169 (309)
67 3ayv_A Putative uncharacterize 42.5 28 0.00095 32.9 5.3 63 19-85 72-135 (254)
68 3u0h_A Xylose isomerase domain 37.4 42 0.0014 31.9 5.7 61 19-85 80-140 (281)
69 2q02_A Putative cytoplasmic pr 35.9 88 0.003 29.4 7.8 57 19-85 81-138 (272)
70 3p8k_A Hydrolase, carbon-nitro 33.3 68 0.0023 31.0 6.5 69 186-256 48-127 (281)
71 3vni_A Xylose isomerase domain 31.4 84 0.0029 30.0 6.9 64 19-84 84-149 (294)
72 1tz9_A Mannonate dehydratase; 31.3 1.5E+02 0.005 29.8 8.9 39 4-42 69-114 (367)
73 3cny_A Inositol catabolism pro 31.1 94 0.0032 29.7 7.2 67 19-85 86-159 (301)
74 2vhh_A CG3027-PA; hydrolase; 2 30.6 1E+02 0.0035 31.7 7.6 71 185-256 106-194 (405)
75 3hkx_A Amidase; alpha-beta-BET 26.2 1.4E+02 0.0047 28.8 7.3 70 185-256 47-128 (283)
76 2zds_A Putative DNA-binding pr 26.1 77 0.0026 31.1 5.6 62 19-84 107-177 (340)
77 2zvr_A Uncharacterized protein 25.9 1.9E+02 0.0064 27.5 8.3 55 19-78 109-163 (290)
78 1xla_A D-xylose isomerase; iso 25.7 94 0.0032 31.7 6.3 63 19-85 112-179 (394)
79 3ivz_A Nitrilase; alpha-beta s 24.4 1.5E+02 0.0053 27.9 7.2 68 185-256 28-110 (262)
80 2w1v_A Nitrilase-2, nitrilase 22.9 1.2E+02 0.0042 28.9 6.2 69 186-256 30-109 (276)
81 3aam_A Endonuclease IV, endoiv 22.3 1.4E+02 0.0049 28.0 6.6 54 18-84 83-137 (270)
82 1uf3_A Hypothetical protein TT 21.1 68 0.0023 29.1 3.7 71 1-88 1-73 (228)
No 1
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=1.4e-103 Score=884.84 Aligned_cols=524 Identities=29% Similarity=0.448 Sum_probs=435.6
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCC
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (591)
|++||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||+++|++.++++...+.+.|++|++.+ .+
T Consensus 3 M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~la~~~--~~ 80 (634)
T 3ilv_A 3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAASC--TD 80 (634)
T ss_dssp -CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTTC--TT
T ss_pred CCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHhhChhhhHHHHHHHHHHHHhC--CC
Confidence 6689999999999999999999999999999999999999999999999999999888888888888899998863 38
Q ss_pred eEEEEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccce
Q 007749 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (591)
Q Consensus 81 i~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~~ 160 (591)
+++++|+|++.++++|||+++|.+|++++.|+|+|||+|++|+|.+||+||+... ...+ ..++..+|||+.
T Consensus 81 i~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~-~~~~--------~~~g~~~p~g~~ 151 (634)
T 3ilv_A 81 ITVSLGLPMRIAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNH-TTTF--------LYNDVKYPFGDV 151 (634)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTC-EEEE--------EETTEEEEEESC
T ss_pred CEEEEeeeEeeCCCccEEEEEEECCeEEEEEcCEeCCCCCCcChhhhcCCCCccc-ccee--------cccCcccccCCe
Confidence 9999999999999999999999999999999999999999999999999998642 1111 135677899988
Q ss_pred eEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCCcee
Q 007749 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (591)
Q Consensus 161 v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~ 240 (591)
+|+++++|||++||||+|||+.+++.++.+|||+|+|||+||+..|+..+|..++++||.+|+++|+|+|++|.++++.+
T Consensus 152 vf~~~g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 231 (634)
T 3ilv_A 152 LYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMI 231 (634)
T ss_dssp CEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCE
T ss_pred EEEECCEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCCCceE
Confidence 99999999999999999999768889999999999999999999999889999999999999999999999998877899
Q ss_pred eeccEEEEeCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhhhhccCCCCeeEeeccccCCCcccCCCCCcc
Q 007749 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (591)
Q Consensus 241 f~G~S~I~p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (591)
|+|+|+|+|+|++++++++|+++++++++++||++.++..|.+.
T Consensus 232 f~G~S~I~p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~------------------------------------ 275 (634)
T 3ilv_A 232 YDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVL------------------------------------ 275 (634)
T ss_dssp EECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC----------------------------------------------
T ss_pred EcceEEEEcCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhcC------------------------------------
Confidence 99999999999999999999865578999999999887665430
Q ss_pred ccCCCCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH-----hcc
Q 007749 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIR-----IGH 395 (591)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~-----~~~ 395 (591)
+..|++|.||++.++++||||||+++|.++++||||||+|||++|+|++.||+++++++ |+++|+.++.+ +..
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~al--G~~~v~~~~~~~~~~~~~~ 353 (634)
T 3ilv_A 276 TQDDLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKEL--GLTAFLQKSNMETLFDLPA 353 (634)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHTCGGGCCSSC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHh--Cchhhhhhhhccccccccc
Confidence 01145778999999999999999999999999999999999999999999999999998 67888776642 221
Q ss_pred CCCCCCCCChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCC
Q 007749 396 YANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSN 475 (591)
Q Consensus 396 ~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (591)
......|.+++++|+..++|||||+.+|++.+.++|+++|+.||++|++|||+++++++.+.+.+.+|++|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~------ 427 (634)
T 3ilv_A 354 LQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWE------ 427 (634)
T ss_dssp SSCTTSHHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTT------
T ss_pred ccccccccchhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccc------
Confidence 11112345579999999999999999999999999999999999999999999999999999998888888653
Q ss_pred CCchhhhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHH
Q 007749 476 VENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAA 555 (591)
Q Consensus 476 ~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~ 555 (591)
..+++++|+|+|+|+.++|.+|+.+ |+ +|+||||+||.++||+|+|||++++++||++|+|++||+|++|++
T Consensus 428 ~~~~~~~N~qaR~R~~~l~~~A~~~-------g~-lvlgTgnksE~~~Gy~T~ygD~~~~~~Pl~~l~KteVr~la~~l~ 499 (634)
T 3ilv_A 428 KDDITLQNIQARGRAPIIWMLTNVK-------QA-LLITTSNRSEGDVGYATMDGDTAGGIAPIAGVDKDFIRSWLRWAE 499 (634)
T ss_dssp TCHHHHHHHHHHTTHHHHHHHHHHH-------TC-EEBCCCCHHHHHTTCSCTTTTTCSSBBTTTTSCHHHHHHHHHHHH
T ss_pred cCcchhhhhhHHHHHHHHHHHHHhc-------CC-EEeccCchhhHhhCCccccCCcccCCcccCCCcHHHHHHHHHHHH
Confidence 3689999999999999999777644 74 999999999999999999999999999999999999999999988
Q ss_pred HhcCCccccccccCCCCCCcccCCCCcccccccc
Q 007749 556 THLGYSSLAEIEAAPPTAELEPIRSNYSQVHKSI 589 (591)
Q Consensus 556 ~~~~~~i~~~i~~~~psaeL~p~~~~~~q~de~~ 589 (591)
+..|+|++++|++|||||||+|.. +.|+||+-
T Consensus 500 ~~~glp~l~~i~~k~pSaeL~p~~--~~q~de~~ 531 (634)
T 3ilv_A 500 KNRNQHGLHIVNKLAPTAELRPSE--YTQTDERD 531 (634)
T ss_dssp HHSCCGGGSSCC---------------------C
T ss_pred HcCCCchHHHHcCCCCCcCcCcCC--CCCCCccc
Confidence 888888889999999999999964 57999874
No 2
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=100.00 E-value=9.9e-101 Score=849.43 Aligned_cols=459 Identities=25% Similarity=0.305 Sum_probs=396.3
Q ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccC-CCe
Q 007749 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT-DGI 81 (591)
Q Consensus 3 ~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~-~~i 81 (591)
+||||++|+|+++||+++|+++|++++++|+++||||||||||++|||+++|++.++++...+.+.+.+|++.++. .++
T Consensus 6 kmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~~~~i 85 (565)
T 4f4h_A 6 KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYAASDAALAELAAQLKPFAGL 85 (565)
T ss_dssp CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred ceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHHhhhCHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999876543 589
Q ss_pred EEEEcceeeeC----------------CeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchh
Q 007749 82 LCSFGMPVIKG----------------SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNE 145 (591)
Q Consensus 82 ~iivG~~~~~~----------------~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~ 145 (591)
.+++|+|++.. +++|||++++.+|+++++|+|+|||+|+.|+|++||++|+...
T Consensus 86 ~ivvG~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~~G~i~~~y~K~hLp~~~~f~E~r~f~~G~~~~---------- 155 (565)
T 4f4h_A 86 AVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIVGGEVAGTYRKQDLPNTEVFDEKRYFATDAAPY---------- 155 (565)
T ss_dssp EEEEEEEEECC-----CCCCCCTTSCCCSEEEEEEEEETTEEEEEEECCSCCCSTTCCGGGTCCCCCCCC----------
T ss_pred EEEEeeeeeecccccccccceecccCCCceEEEEEEEECCEEEEEEeeeecCCCcccceeccccCCCcce----------
Confidence 99999998643 3599999999999999999999999999999999999998752
Q ss_pred hHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcE
Q 007749 146 ISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (591)
Q Consensus 146 ~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~ 225 (591)
+|+++++|||+.||||+|||+ +.|.++++||++|++||+||+..||..+|..++++||.+|+++
T Consensus 156 ---------------v~~~~g~~iGv~IC~Dlwfpe-~~r~la~~GA~ii~~psAs~~~~gk~~~r~~ll~arA~e~~~~ 219 (565)
T 4f4h_A 156 ---------------VFELNGVKFGVVICEDVWHAS-AAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETGLP 219 (565)
T ss_dssp ---------------EEEETTEEEEECCGGGGGSSH-HHHHHHHTTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHHCCC
T ss_pred ---------------eEEecCcEEEEEEeehhcccc-hhHHHHhCCCeeeecccccccccCcHHHHHHHHHHHHHHhCCc
Confidence 899999999999999999996 7889999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhhhhccCCCCeeEeec
Q 007749 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPY 304 (591)
Q Consensus 226 ~v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 304 (591)
|+|+|++|.+ ++.+|+|+|+|+ |+|+++++++.|+| +++++++|.....
T Consensus 220 vvy~N~vG~~-~~~~f~G~S~iidp~G~vla~~~~f~e---~~~~~d~d~~~~~-------------------------- 269 (565)
T 4f4h_A 220 MVYVNLVGGQ-DELVFDGGSFVLDGAGELVAKMPQFEE---GNAIVEFDGARAL-------------------------- 269 (565)
T ss_dssp EEEEECEEEE-TTEEEEBCCEEECTTSCEEEECCBSCC---EEEEEEEETTEEC--------------------------
T ss_pred EEEeeeecCC-CCeEEECCcceecCCCcEEEEcccccc---ceEEEEecccccc--------------------------
Confidence 9999999998 789999999999 99999999999964 5777887743210
Q ss_pred cccCCCcccCCCCCccccCCCCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCch
Q 007749 305 NLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDE 384 (591)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~ 384 (591)
+. .. ..+..+++|+++++++|||||++|+|++++|||||||+|||++|+|+ ++||
T Consensus 270 ----~~--------~~-~~~~~~~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la-------~~al----- 324 (565)
T 4f4h_A 270 ----PA--------AI-APALSVEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVA-------VDAL----- 324 (565)
T ss_dssp ----CC--------CB-CCCCCHHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHHH-----
T ss_pred ----cc--------cc-ccCcchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHH-------HHHh-----
Confidence 00 00 01234568999999999999999999999999999999999999988 5774
Q ss_pred hHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCC
Q 007749 385 QVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 464 (591)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~ 464 (591)
+.+ +|++++||+++||+.|.++|+.||+.||++|++|+|+++++++...+...++.
T Consensus 325 ---------g~~---------------~v~~v~mp~~~ts~~t~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~ 380 (565)
T 4f4h_A 325 ---------GAE---------------RVRAVMMPSRYTAGISTTDAADMARRVGVRYDEIAIAPMFDAFRASLAAEFAG 380 (565)
T ss_dssp ---------CGG---------------GEEEEECCCTTCCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHTTTTTT
T ss_pred ---------CCc---------------cEEEEeccccccccchHHHHHHHHHHhCCceeeeecchHHHHHHHHhhhcccC
Confidence 433 69999999999999999999999999999999999999999987776643222
Q ss_pred CCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcH
Q 007749 465 RPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISK 544 (591)
Q Consensus 465 ~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K 544 (591)
..+|+++||+|||+||.+||.+|+ +.|+ +||||||+||.++||+|+|||++++++||+||+|
T Consensus 381 ----------~~~d~~~eN~qaR~R~~~l~~~an-------~~g~-lvlgTgn~sE~a~Gy~T~~Gd~~~~~~pi~~l~K 442 (565)
T 4f4h_A 381 ----------LAEDATEENIQARIRGTLLMALSN-------KFGS-IVLTTGNKSEMAVGYCTLYGDMAGGFAVIKDIAK 442 (565)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHHHHH-------HHCC-EEEECCCHHHHHHTCSCTTTTTCSSEETTTTCCH
T ss_pred ----------ccchhhHhhhcchhhHHHHHHHHh-------hcCC-cccCCCchhhHhhccccccCCcccCchhccCccH
Confidence 236899999999999999997765 4475 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--C--CccccccccCCCCCCcccCCCCcccccccc
Q 007749 545 QDLRTFLRWAATHL--G--YSSLAEIEAAPPTAELEPIRSNYSQVHKSI 589 (591)
Q Consensus 545 ~~v~~l~~~~~~~~--~--~~i~~~i~~~~psaeL~p~~~~~~q~de~~ 589 (591)
|+||+|+||+++.. + ..||++|+++||||||+| .|+||+.
T Consensus 443 t~v~~l~~~~~~~~~~~~~~~ip~~i~~~~psaeL~~-----~Q~ded~ 486 (565)
T 4f4h_A 443 TLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAELRE-----NQTDQDS 486 (565)
T ss_dssp HHHHHHHHHHHHTCCTTCCCSSCHHHHHC--------------------
T ss_pred HHHHHHHHHHhhhccccCcccChHHHcCCCCCcCcCC-----CCCCccc
Confidence 99999999987643 2 248899999999999999 5999874
No 3
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=100.00 E-value=7.2e-94 Score=809.44 Aligned_cols=527 Identities=21% Similarity=0.277 Sum_probs=424.2
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCe
Q 007749 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGI 81 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i 81 (591)
.+||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||++.|++.++++.+.+.+.+..|++.++++++
T Consensus 11 g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~l~~~a~~~~i 90 (680)
T 3sdb_A 11 GFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLDLVTESADLLP 90 (680)
T ss_dssp TEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHhhCHHHHHhhHHHHHHHHHHhhcCCc
Confidence 47999999999999999999999999999999999999999999999999999998888888888889999998888999
Q ss_pred EEEEcceeeeCCeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccc-e
Q 007749 82 LCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY-G 160 (591)
Q Consensus 82 ~iivG~~~~~~~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~-~ 160 (591)
++++|+|++.++++|||+++|++|++++.|+|+|||+|++|+|.+||++|+..... + + ..+..+|||+ .
T Consensus 91 ~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~F~~G~~~~~~--i-------~-~~g~~vpfg~~~ 160 (680)
T 3sdb_A 91 VLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREFYERRQMAPGDGERGT--I-------R-IGGADVAFGTDL 160 (680)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTEEEEEEECSCCCEETTEEGGGTEECCTTCCSE--E-------E-ETTEEEEBSSCE
T ss_pred EEEEeceEEeCCCceEEEEEEeCCCEEEEEeeecCCCCCccChhhhcCCCCCCCce--e-------e-ecCcccccCCce
Confidence 99999999999999999999999999999999999999999999999999864111 0 1 1345789986 5
Q ss_pred eE---EeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcC-CCCCC
Q 007749 161 FI---QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDG 236 (591)
Q Consensus 161 v~---~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~-~G~~~ 236 (591)
+| +++++|||++||||+|||+.+++.++++|||||+|||+||+..||.++|..+++.++++++++|||+|+ .|.++
T Consensus 161 vf~~~~~~g~riGv~IC~Dl~fPe~~~r~la~~GAdiil~pSasp~~~gk~~~r~~l~~~~aar~~~~yV~a~~~~G~~~ 240 (680)
T 3sdb_A 161 LFAASDLPGFVLHVEIAEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGEST 240 (680)
T ss_dssp EEEETTCTTCEEEEEEGGGGGSSSCHHHHHHHHTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCTTSCC
T ss_pred eEeeeccCCeEEEEEEeccccccccHHHHHHhcCCeEEEEecCCccccCcHHHHHHHHHHHHHHhCCcEEEEECCcccCC
Confidence 67 589999999999999999876789999999999999999999999888888999999999999999887 56666
Q ss_pred CceeeeccEEEEeCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhhhhc----cCCCCeeEeeccccCCCcc
Q 007749 237 GRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASC----KTKIPSVAVPYNLCQPFNL 312 (591)
Q Consensus 237 ~~~~f~G~S~I~p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 312 (591)
++++|+|+|+|+|+|+++++++.|+. ++++++++||++.++..|.++++|++.... ...+..+ +|.+..+..
T Consensus 241 ~~l~f~G~S~I~p~G~vla~~~~f~~-~e~ll~adiDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~- 316 (680)
T 3sdb_A 241 TDLAWDGQTMIWENGALLAESERFPK-GVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESFRRI--DFALDPPAG- 316 (680)
T ss_dssp SSCCCCCCEEEEETTEEEEECCSSCS-SCEEEEEEEEHHHHHHHHHHCHHHHHHHHHTHHHHHTCEEE--EECCCCCCS-
T ss_pred CCeEEeccEEEEcCCEEEEECCCCCC-CCcEEEEEEcHHHHHHHHHhCCchhhhhhhhccccccceee--eeeccCccc-
Confidence 78999999999999999999999844 258999999999999999998888654310 1224333 344432111
Q ss_pred cCCCCCccccCCCCCH---------HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCc
Q 007749 313 KMSLSSPLKINYHSPE---------EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGD 383 (591)
Q Consensus 313 ~~~~~~~~~~~~~~~~---------~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~ 383 (591)
...+.+++++.||.|. ++++++++.||+||++++|.++++||||||+|||++|+++. +++++|+.
T Consensus 317 ~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~----~a~~~lg~-- 390 (680)
T 3sdb_A 317 DIGLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVAT----HAMDREGR-- 390 (680)
T ss_dssp CCCCCSCCCSCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHH----HHHHHTTC--
T ss_pred cccccccccCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHH----HHHHHhCC--
Confidence 1135688888888884 47899999999999999999999999999999998666652 22344321
Q ss_pred hhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhC
Q 007749 384 EQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 463 (591)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~ 463 (591)
+.+ +|+||+||+..+++.+.++|+++|+.||++|++|||+++++++.+.+...+.
T Consensus 391 ----------~~~---------------~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~~~ 445 (680)
T 3sdb_A 391 ----------PRS---------------DILAFALPGFATGEHTKNNAIKLARALGVTFSEIDIGDTARLMLHTIGHPYS 445 (680)
T ss_dssp ----------CGG---------------GEEEEECCC--------CHHHHHHHHHTCEEEECCCHHHHHHHHHHC-----
T ss_pred ----------CCc---------------eEEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHhchhhc
Confidence 011 5999999999999999999999999999999999999999888766653211
Q ss_pred CCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhccccccc-CCCCCCCcCCCCC
Q 007749 464 KRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKY-DCSSADINPIGSI 542 (591)
Q Consensus 464 ~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~-gd~~~~~~Pl~~l 542 (591)
++....|++++|+|+|+||.++|.+|+.. | .+|+||+|+||.++||+|+| ||++++++||++|
T Consensus 446 --------~~~~~~~~~~~N~~ar~R~~~l~~~A~~~-------g-~lvlgTgn~sE~~~Gy~T~~~gD~~~~~~Pl~~l 509 (680)
T 3sdb_A 446 --------VGEKVYDVTFENVQAGLRTDYLFRIANQR-------G-GIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGV 509 (680)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHH-------T-EEEEECCCHHHHHHTCSCCSSSTTCCSEETTTTS
T ss_pred --------CCCCCcchhHHHhhHHHHHHHHHHHHHHc-------C-CEEEeCCcHHhHhcCeeeccCCCccccccccCCC
Confidence 23344789999999999999999777644 6 59999999999999999999 9999999999999
Q ss_pred cHHHHHHHHHHHHHhcCC-----ccccccccCCCCCCcccCCCCcccccccc
Q 007749 543 SKQDLRTFLRWAATHLGY-----SSLAEIEAAPPTAELEPIRSNYSQVHKSI 589 (591)
Q Consensus 543 ~K~~v~~l~~~~~~~~~~-----~i~~~i~~~~psaeL~p~~~~~~q~de~~ 589 (591)
+|++||+|++|+++.... .+|++|++|||||||+|+++...|+||+.
T Consensus 510 ~K~eVr~lar~l~~~~~~~~~~~~ip~~i~~k~Ps~eL~p~~~~~~q~de~~ 561 (680)
T 3sdb_A 510 PKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPELIPTGEEELQSSEAK 561 (680)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC-------------CHHH
T ss_pred cHHHHHHHHHHHHhhccccccccCchHHHhcCCCCcCcCCCCCCCCCCchhh
Confidence 999999999998775432 58899999999999999766678999874
No 4
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=100.00 E-value=5.7e-86 Score=738.50 Aligned_cols=481 Identities=25% Similarity=0.302 Sum_probs=395.1
Q ss_pred CC-ceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcc--c
Q 007749 1 MR-LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD--W 77 (591)
Q Consensus 1 m~-~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~--~ 77 (591)
|. +||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||++.|++.++++...+.+.|++|++.+ .
T Consensus 1 M~~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~dl~~~~~~~~~~~~~l~~la~~~~~~ 80 (590)
T 3n05_A 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEE 80 (590)
T ss_dssp -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHHHhhCHHHHHHHHHHHHHHHHhhhhc
Confidence 54 69999999999999999999999999999999999999999999999999999988888888889999999875 2
Q ss_pred C-CCeEEEEcceeeeC----------CeeeEeEEEEeCCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhh
Q 007749 78 T-DGILCSFGMPVIKG----------SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (591)
Q Consensus 78 ~-~~i~iivG~~~~~~----------~~lyNsa~vi~~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~ 146 (591)
+ .++++++|++++.+ +++|||+++|++|++++.|+|+|||+|++|+|.+||++|+..
T Consensus 81 ~~~~i~ivvG~~~~~~~~~~~~~~~~~~lyNsa~vi~~G~i~~~y~K~~L~~~~~f~E~r~f~~G~~~------------ 148 (590)
T 3n05_A 81 GFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTM------------ 148 (590)
T ss_dssp TCTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEETTEEEEEEECCCCCSSSSCCHHHHCCCCCEE------------
T ss_pred cCCceEEEEeeEEEEcCcccccccccCCeeEEEEEEeCCEEEEEEeCccCCCCCccCccccccCCCcc------------
Confidence 2 35999999998753 379999999999999999999999999999999999999864
Q ss_pred HhhccCccccccceeEEeCCcceeEeeecccCC-CChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcE
Q 007749 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFT-PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (591)
Q Consensus 147 ~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~-pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~ 225 (591)
.+|+++++|||++||||+|| |+ +.+.++.+|||+|++||+||+..++..+|..++++||.+|+++
T Consensus 149 -------------~v~~~~g~~iG~~IC~D~~f~pe-~~~~la~~Ga~ii~~psa~p~~~gk~~~~~~l~~~rA~e~~~~ 214 (590)
T 3n05_A 149 -------------PIVRLHGVDIALAICEDLWQDGG-RVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCT 214 (590)
T ss_dssp -------------EEEEETTEEEEEEEGGGGGSTTS-HHHHHHHTTCSEEEEEECCBCCCCSSCHHHHHHHHHHHHHTSE
T ss_pred -------------eEEEECCEEEEEEeehhhccCCh-HHHHHHHcCCCEEEEecCCccccCcHHHHHHHHHHHHHHhCCE
Confidence 38999999999999999999 65 8889999999999999999999999889999999999999999
Q ss_pred EEEEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhhhhccCCCCee-Eee
Q 007749 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSV-AVP 303 (591)
Q Consensus 226 ~v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~~~~~~~~~~~-~~~ 303 (591)
++|+|++|.+ ++++|+|+|+|+ |+|+++++++.|++ ++++++||++.++..+.. ..++. .... .+.
T Consensus 215 vv~an~~G~~-~~~~f~G~S~iidp~G~vla~~~~~~e---~~~~~didl~~~~~~~~~-~~~~~-------~~~~~~~~ 282 (590)
T 3n05_A 215 TAYLAMIGGQ-DELVFDGDSIVVDRDGEVVARAPQFSE---GCVVLDLDLPAAEAEPPT-GVVDD-------GLRIDRLV 282 (590)
T ss_dssp EEEEECEEEE-TTEEEEBCCEEECTTSCEEEECCBTSC---EEEEEEEEECCCCSSCCC-SBCTT-------SCEEEEEE
T ss_pred EEEEecccCC-CCeEEeCcEEEECCCCcEEEEcCCCCC---cEEEEEEccccccccccc-ccccc-------cccccccc
Confidence 9999999988 789999999999 99999999998853 799999999876321100 00000 0000 000
Q ss_pred ccccCCCcccCCCC-Cccc---cCCCCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHh
Q 007749 304 YNLCQPFNLKMSLS-SPLK---INYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI 379 (591)
Q Consensus 304 ~~~~~~~~~~~~~~-~~~~---~~~~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al 379 (591)
++.. . . +.. .+.. ..++.+.++++.+++.||+||++++|.++++||||||+|||++|+|+ ++++
T Consensus 283 --~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la-------~~al 350 (590)
T 3n05_A 283 --ISEE-P-L-PAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIA-------CDAL 350 (590)
T ss_dssp --SCSS-C-C-CCCCCCCCCCBCCCCCHHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHH-------HHHH
T ss_pred --cCCC-C-C-CcccccccccccccCCcHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHH-------HHHh
Confidence 0000 0 0 000 0000 11245678999999999999999999999999999999999999988 4553
Q ss_pred hcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhh
Q 007749 380 SNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 459 (591)
Q Consensus 380 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~ 459 (591)
|.+ +|++++||+.++++.+.++|+++|+.||++|++|||++.++.+.+.+.
T Consensus 351 --------------G~~---------------~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~ 401 (590)
T 3n05_A 351 --------------GAQ---------------NVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG 401 (590)
T ss_dssp --------------CGG---------------GEEEEECCCSSCCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHHC
T ss_pred --------------Ccc---------------cEEEEEECCCCCCHHHHHHHHHHHHHcCCcEEEEEChHHHHHHHHHhc
Confidence 422 599999999999999999999999999999999999998887765543
Q ss_pred hhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCC
Q 007749 460 TLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPI 539 (591)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl 539 (591)
..+++.+|+|+|+|+.++|.+|+.. | .++++|||+||..+||+|+|||+.++++||
T Consensus 402 ----------------~~~~~~~n~~ar~r~~~l~~~A~~~-------g-~~vl~TGn~se~~~Gy~t~~gd~~~~~~Pl 457 (590)
T 3n05_A 402 ----------------LTGLAEENLQSRLRGTTLMAISNQE-------G-HIVLAPGNKSELAVGYSTLYGDSVGAYGPI 457 (590)
T ss_dssp ----------------CCTHHHHHHHHHHHHHHHHHHHHHH-------T-CEEBCCCCHHHHHHTCCCSSCTTSCSBCTT
T ss_pred ----------------ccchhhhHHHHHHHHHHHHHHHHhc-------C-CEEEeCCCHHHHhcCchhhcCCCccceeec
Confidence 1578899999999999999777643 6 599999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHh----cC-CccccccccCCCCCCcccCCCCcccccccc
Q 007749 540 GSISKQDLRTFLRWAATH----LG-YSSLAEIEAAPPTAELEPIRSNYSQVHKSI 589 (591)
Q Consensus 540 ~~l~K~~v~~l~~~~~~~----~~-~~i~~~i~~~~psaeL~p~~~~~~q~de~~ 589 (591)
++++|++||+|++|++.. .+ .++|++|++|||||||+| .|+||+-
T Consensus 458 ~~l~K~eVr~la~~lg~~~~~~~~~~~ip~~i~~k~ps~~L~p-----~q~de~~ 507 (590)
T 3n05_A 458 KDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAELRP-----GQVDTDS 507 (590)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTCC-------------------
T ss_pred CCCcHHHHHHHHHHhCcccccccccccChHHHhCCCCCCCCCC-----CCcCccc
Confidence 999999999999997741 23 457799999999999999 5888863
No 5
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.2e-47 Score=386.01 Aligned_cols=253 Identities=21% Similarity=0.182 Sum_probs=218.9
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhh-HHHHHHHHHHHhcccCC
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-THAWECLKDLLLGDWTD 79 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~-~~~~~~l~~la~~~~~~ 79 (591)
+++||||++|+++..+|+++|++++.+++++|+++|||||||||+++|||.+.++....... ....+.|+++++ ++
T Consensus 18 ~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~---~~ 94 (281)
T 3p8k_A 18 GSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAE---KY 94 (281)
T ss_dssp TSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHH---HH
T ss_pred CCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHh---hC
Confidence 35799999999999999999999999999999999999999999999999987654433332 345556666665 47
Q ss_pred CeEEEEcce-eeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccc
Q 007749 80 GILCSFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (591)
Q Consensus 80 ~i~iivG~~-~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~ 157 (591)
++++++|.+ ++.++++||++++|+ +|++++.|+|+||+++ |.|.+||++|+...
T Consensus 95 ~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~~~---------------------- 150 (281)
T 3p8k_A 95 KVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEYVA---------------------- 150 (281)
T ss_dssp TCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSSCC----------------------
T ss_pred CeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCCCc----------------------
Confidence 999999975 567899999999998 9999999999999863 57999999998641
Q ss_pred cceeEEe-CCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCC
Q 007749 158 GYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (591)
Q Consensus 158 G~~v~~~-~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~ 236 (591)
.+|++ +++|||++||||+|||+ ..|.++.+|||+|++|++|+... ...|..++++||.||+++++++|++|.+
T Consensus 151 --~v~~~~~~~~ig~~IC~D~~fpe-~~r~~~~~Gadli~~psa~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~- 224 (281)
T 3p8k_A 151 --EPFQLSDGTYVTQLICYDLRFPE-LLRYPARSGAKIAFYVAQWPMSR--LQHWHSLLKARAIENNMFVIGTNSTGFD- 224 (281)
T ss_dssp --CCEECTTCCEEEEEEGGGGGCTH-HHHHHHHTTCCEEEEEECCBGGG--HHHHHHHHHHHHHHHTSEEEEEECEEEC-
T ss_pred --eeEEeCCCcEEEEEEecCCCCcH-HHHHHHHCCCCEEEECCCCCCcc--HHHHHHHHHHHHHHcCCEEEEEccCcCC-
Confidence 28999 99999999999999996 77899999999999999998643 4567788999999999999999999988
Q ss_pred CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhh
Q 007749 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQ 290 (591)
Q Consensus 237 ~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~ 290 (591)
++..|+|+|+|+ |+|+++++ +.++ +++++++||++.+++.|.+.+.+++.
T Consensus 225 ~~~~~~G~S~ii~p~G~vl~~-~~~~---e~~l~~~id~~~~~~~R~~~p~~~~r 275 (281)
T 3p8k_A 225 GNTEYAGHSIVINPNGDLVGE-LNES---ADILTVDLNLNEVEQQRENIPVFKSI 275 (281)
T ss_dssp SSCEEECCCEEECTTSCEEEE-CCSS---CEEEEEEEETHHHHHHHHHSCGGGTC
T ss_pred CCcEEeeeEEEECCCCCEEEe-cCCC---CeEEEEEEcHHHHHHHHHhCcchhhc
Confidence 678999999999 99999999 5553 47999999999999999887776553
No 6
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=100.00 E-value=1.6e-46 Score=379.21 Aligned_cols=246 Identities=24% Similarity=0.264 Sum_probs=209.6
Q ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchh-----hHHHHHHHHHHHhccc
Q 007749 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDT-----VTHAWECLKDLLLGDW 77 (591)
Q Consensus 3 ~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~-----~~~~~~~l~~la~~~~ 77 (591)
|||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||.+.+......+ .....+.+.++++
T Consensus 1 M~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~--- 77 (262)
T 3ivz_A 1 MVKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVAR--- 77 (262)
T ss_dssp -CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHH---
T ss_pred CeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHH---
Confidence 39999999999999999999999999999999999999999999999987653110011 1123344555554
Q ss_pred CCCeEEEEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCcccc
Q 007749 78 TDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (591)
Q Consensus 78 ~~~i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp 156 (591)
++++++++|++++.++++||++++|+ +| +++.|+|+||+ |.|.+||++|+...
T Consensus 78 ~~~~~iv~G~~~~~~~~~yNs~~~i~~~G-~~~~y~K~hL~----~~E~~~f~~G~~~~--------------------- 131 (262)
T 3ivz_A 78 DTGVYIVAGTAEKDGDVLYNSAVVVGPRG-FIGKYRKIHLF----YREKFFFEPGDLGF--------------------- 131 (262)
T ss_dssp HHCCEEEEEEEEEETTEEEEEEEEEETTE-EEEEEECSSCC----GGGGGTCBCCCSCS---------------------
T ss_pred HcCcEEEEeEEEeeCCcEEEEEEEEcCCe-eEEEEeecccC----CchhceEeCCCCCc---------------------
Confidence 58999999999999999999999997 77 99999999995 57999999998321
Q ss_pred ccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCC
Q 007749 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (591)
Q Consensus 157 ~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~ 236 (591)
.+|+++++|||++||||+|||+ +.|.++.+|||+|++|++|+.. +|..++++||.+|+++++++|++|.+
T Consensus 132 ---~v~~~~~~~ig~~IC~D~~fpe-~~r~~~~~ga~li~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~- 201 (262)
T 3ivz_A 132 ---RVFDLGFMKVGVMICFDWFFPE-SARTLALKGADVIAHPANLVMP-----YAPRAMPIRALENKVYTVTADRVGEE- 201 (262)
T ss_dssp ---CEEECSSCEEEECCGGGGGSHH-HHHHHHHTTCSEEEEEECCCSS-----CHHHHHHHHHHHHTCEEEEEECCSEE-
T ss_pred ---eEEEECCEEEEEEEecCCCchH-HHHHHHHCCCCEEEEcCCCCch-----HHHHHHHHHHHhcCcEEEEECCCCcC-
Confidence 2899999999999999999996 7889999999999999998763 46778999999999999999999988
Q ss_pred CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhcc--CCchhhh
Q 007749 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS--ISSFQEQ 290 (591)
Q Consensus 237 ~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~--~~~~~~~ 290 (591)
++..|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|.+ .+.+++.
T Consensus 202 ~~~~~~G~S~ii~p~G~il~~~~~~~---~~~~~~~id~~~~~~~R~~~~~p~l~~r 255 (262)
T 3ivz_A 202 RGLKFIGKSLIASPKAEVLSMASETE---EEVGVAEIDLSLVRNKRINDLNDIFKDR 255 (262)
T ss_dssp TTEECCCCCEEECTTSCEEEECCSSC---CEEEEEECCHHHHHCCEEETTEEHHHHC
T ss_pred CCceEeeeEEEECCCCCEeecCCCCC---ceEEEEEEcHHHHHHHhhcccCchhhhc
Confidence 678899999999 9999999998764 3699999999999998876 5555543
No 7
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=100.00 E-value=6.6e-47 Score=386.20 Aligned_cols=250 Identities=21% Similarity=0.225 Sum_probs=205.4
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc-c-cchhhHHHHHHHHHHHhcccCC
Q 007749 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF-L-ELDTVTHAWECLKDLLLGDWTD 79 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~-~-~~~~~~~~~~~l~~la~~~~~~ 79 (591)
.+||||++|+++..+|+++|++++.+++++|+++|||||||||+++|||.+.|+. . .........+.|.+++ +++
T Consensus 19 ~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a---~~~ 95 (283)
T 3hkx_A 19 SHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIA---RDR 95 (283)
T ss_dssp EEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHH---HHT
T ss_pred CccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHH---HHh
Confidence 4699999999999999999999999999999999999999999999999987621 0 0111123334445554 468
Q ss_pred CeEEEEcceeeeC-CeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccc
Q 007749 80 GILCSFGMPVIKG-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (591)
Q Consensus 80 ~i~iivG~~~~~~-~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~ 157 (591)
++++++|++++.+ +++||++++|+ +|++++.|+|+||+++ +|.+||++|+...
T Consensus 96 ~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~---~E~~~f~~G~~~~---------------------- 150 (283)
T 3hkx_A 96 GIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGP---EEKAAFVPGEQPP---------------------- 150 (283)
T ss_dssp TSEEEECCBCSSCTTTCCBEEEEECTTSCEEEEEECSSCCHH---HHHHHSCCCCSCC----------------------
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEEcCCCcEEEEEccccCCCc---CchhhccCCCCCc----------------------
Confidence 9999999998775 89999999998 8999999999999643 5899999998631
Q ss_pred cceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCCCCCC
Q 007749 158 GYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGG 237 (591)
Q Consensus 158 G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~ 237 (591)
.+|+++++|||++||||+|||+ +.|.++.+|||+|++|++|+...+ .+|..++++||.||+++++++|++|.+ +
T Consensus 151 --~v~~~~~~~ig~~IC~D~~fpe-~~r~l~~~Ga~li~~ps~~~~~~~--~~~~~~~~~rA~en~~~vv~~n~~G~~-~ 224 (283)
T 3hkx_A 151 --PVLSWGGRQLSLLVCYDVEFPE-MVRAAAARGAQLVLVPTALAGDET--SVPGILLPARAVENGITLAYANHCGPE-G 224 (283)
T ss_dssp --CEEEETTEEEEECCGGGGGSHH-HHHHHHHTTCSEEEEECCCBSCCT--HHHHTHHHHHHHHHTCEEEEECBEEEE-T
T ss_pred --eEEEECCEEEEEEEecCcCCHH-HHHHHHHCCCCEEEECCCCCCccc--HHHHHHHHHHHHHhCCEEEEEccccCC-C
Confidence 2899999999999999999996 788999999999999999987655 467788999999999999999999988 6
Q ss_pred ceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 238 RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 238 ~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
+..|.|+|+|+ |+|+++++++ ++ +++++++||++.+++.|.+.+.+++
T Consensus 225 ~~~~~G~S~ii~p~G~vl~~~~-~~---e~~l~a~id~~~~~~~R~~~~~~~~ 273 (283)
T 3hkx_A 225 GLVFDGGSVVVGPAGQPLGELG-VE---PGLLVVDLPDQSQDAGSDSADYLQD 273 (283)
T ss_dssp TEEEECCCEEECTTSCEEEECC-SS---CEEEEEEEEC----------CHHHH
T ss_pred CeEEeeEEEEECCCCCEEEecC-CC---CeEEEEEECHHHHHHHHHhCChhHh
Confidence 78999999999 9999999997 53 4799999999999999988776654
No 8
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=100.00 E-value=1e-45 Score=374.16 Aligned_cols=250 Identities=12% Similarity=0.067 Sum_probs=214.5
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCC
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (591)
|+.||||++|+++..+|++.|++++.+++++| ++|+|||||||++++||.+.+......+.....+.|.++++ +++
T Consensus 1 M~~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~---~~~ 76 (266)
T 2e11_A 1 MHDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAA---RLG 76 (266)
T ss_dssp CCCEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHH---HHT
T ss_pred CCccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHH---HhC
Confidence 88999999999999999999999999999999 89999999999999999765433333333445556666666 479
Q ss_pred eEEEEcceeeeCCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhhccCccccccc
Q 007749 81 ILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (591)
Q Consensus 81 i~iivG~~~~~~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~~~vp~G~ 159 (591)
+++++|++++.++++||++++++ +|+++ .|+|+||+++ +.|.+||++|+..
T Consensus 77 ~~iv~G~~~~~~~~~yNs~~~i~~~G~i~-~y~K~hL~~~--~~E~~~f~~G~~~------------------------- 128 (266)
T 2e11_A 77 AAITGSVQLRTEHGVFNRLLWATPDGALQ-YYDKRHLFRF--GNEHLRYAAGRER------------------------- 128 (266)
T ss_dssp SEEEEEEEEEETTEEEEEEEEECTTSCEE-EEECSSCCGG--GTTTTTSBCCCSC-------------------------
T ss_pred CEEEEeeeEccCCcEEEEEEEECCCCCEE-EEeeeccCCC--cChhhhccCCCCc-------------------------
Confidence 99999999988899999999997 89999 9999999876 4699999999754
Q ss_pred eeEEeCCcceeEeeecccCCCChHHHHHH---hC---CCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCCC
Q 007749 160 GFIQFLDTAVAAEICEELFTPIPPHADLA---LN---GVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQG 233 (591)
Q Consensus 160 ~v~~~~~~~iGv~IC~D~~~pe~~~r~la---~~---Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~G 233 (591)
.+|+++++|||++||||+|||+ ..|.++ .+ |||+|++|++|+...+ .+|..++++||.||+++++++|++|
T Consensus 129 ~v~~~~~~~ig~~ICyD~~fpe-~~r~~~~~~~~~~~ga~~i~~~s~w~~~~~--~~~~~~~~~rA~en~~~vv~an~~G 205 (266)
T 2e11_A 129 LCVEWKGWRINPQVCYDLRFPV-FCRNRFDVERPGQLDFDLQLFVANWPSARA--YAWKTLLRARAIENLCFVAAVNRVG 205 (266)
T ss_dssp CCEEETTEEEEEEEGGGGGCTT-TTCCCBSSSSTTSBSCSEEEEEECCCGGGH--HHHHHHHHHHHHHTTSEEEEEECEE
T ss_pred eEEEECCEEEEEEEEeccCCHH-HHHHHHhhhhccCCCCcEEEEeCCCCCCch--HHHHHHHHHHHHhcCcEEEEEcCCc
Confidence 2899999999999999999997 455654 54 9999999999986543 3677889999999999999999999
Q ss_pred CCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 234 CDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 234 ~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
.++++..|.|+|+|+ |+|+++++++ ++ +++++++||++.++..|.+.+.+++
T Consensus 206 ~~~~~~~~~G~S~ii~p~G~v~~~~~-~~---e~~l~~~id~~~~~~~R~~~~~~~~ 258 (266)
T 2e11_A 206 VDGNQLHYAGDSAVIDFLGQPQVEIR-EQ---EQVVTTTISAAALAEHRARFPAMLD 258 (266)
T ss_dssp ECTTSCEEEEEEEEECTTSCEEEEEE-SS---CEEEEEEECHHHHHHHHHHSCGGGG
T ss_pred CCCCCceEeeeEEEECCCCceeeecC-CC---CeEEEEEEcHHHHHHHHHhCChhhh
Confidence 886668899999999 9999999987 53 4799999999999999988776654
No 9
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=100.00 E-value=1.7e-45 Score=374.55 Aligned_cols=255 Identities=15% Similarity=0.087 Sum_probs=216.9
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccc-hhhHHHHHHHHHHHhcccCC
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL-DTVTHAWECLKDLLLGDWTD 79 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~-~~~~~~~~~l~~la~~~~~~ 79 (591)
|+.||||++|+++. +|++.|++++.+++++|+++|+|||||||++++||.+.++.... .+.....+.|.++++ ++
T Consensus 1 M~~~~va~vQ~~~~-~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~---~~ 76 (276)
T 2w1v_A 1 MSTFRLALIQLQVS-SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAK---ES 76 (276)
T ss_dssp CCEEEEEEEECCCC-SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHH---HH
T ss_pred CCccEEEEEecccc-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHH---Hc
Confidence 88999999999965 99999999999999999999999999999999999876643211 112234455666665 47
Q ss_pred CeEEEEcc-eeeeCCeeeEeEEEEe-CCEEEEEEecccC-----CCCCCcccccccccCCCCCcccccccchhhHhhccC
Q 007749 80 GILCSFGM-PVIKGSERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (591)
Q Consensus 80 ~i~iivG~-~~~~~~~lyNsa~vi~-~G~il~~y~K~~L-----p~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~~~~ 152 (591)
++++++|. +++.++++||++++|+ +|++++.|+|+|| |.+..|.|.+||++|+..
T Consensus 77 ~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~~------------------ 138 (276)
T 2w1v_A 77 SIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSF------------------ 138 (276)
T ss_dssp TSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCC------------------
T ss_pred CeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCCc------------------
Confidence 99999995 5666889999999998 8999999999999 555456799999999754
Q ss_pred ccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEEEcCC
Q 007749 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (591)
Q Consensus 153 ~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~aN~~ 232 (591)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...++. +|..++++||.||+++++++|++
T Consensus 139 -------~v~~~~~~~ig~~ICyD~~fpe-~~r~~~~~ga~ll~~ps~~~~~~~~~-~~~~~~~~rA~en~~~vv~~n~~ 209 (276)
T 2w1v_A 139 -------STFDTPYCKVGLGICYDMRFAE-LAQIYAQRGCQLLVYPGAFNLTTGPA-HWELLQRARAVDNQVYVATASPA 209 (276)
T ss_dssp -------CEEECSSCEEEECCGGGGGCHH-HHHHHHHTTEEEEEEECCCCTTHHHH-HHHHHHHHHHHHHTCEEEEECCC
T ss_pred -------eeEEeCCceEEEEEEeccccHH-HHHHHHHcCCCEEEECCcCCCcCCHH-HHHHHHHHHHHHcCcEEEEeccc
Confidence 2899999999999999999996 67899999999999999998765543 56778999999999999999999
Q ss_pred CCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhhh
Q 007749 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQ 290 (591)
Q Consensus 233 G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~~ 290 (591)
|.+.++..|.|+|+|+ |+|+++++++. + +++++++||++.++..|.+.+.+++.
T Consensus 210 G~~~~~~~~~G~S~ii~p~G~v~~~~~~-~---e~~l~~~id~~~~~~~R~~~~~~~~~ 264 (276)
T 2w1v_A 210 RDDKASYVAWGHSTVVDPWGQVLTKAGT-E---ETILYSDIDLKKLAEIRQQIPILKQK 264 (276)
T ss_dssp CCTTSSSCCCCCCEEECTTSCEEEECCS-S---SEEEEEEEEHHHHHHHHHHSCGGGSC
T ss_pred ccCCCCceeeeEeEEECCCCCEeEEcCC-C---CeEEEEEEcHHHHHHHHHhCChhHhC
Confidence 9885578899999999 99999999875 2 47999999999999999887776543
No 10
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=100.00 E-value=5.5e-44 Score=366.16 Aligned_cols=253 Identities=19% Similarity=0.160 Sum_probs=209.2
Q ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHHHH--HHCCCeEEEcCCCCcCCCCCCcccccchhh-----HHHHHHHHHHHhc
Q 007749 3 LLKVATCNLNNWALDFDCNLKNIKESIGRA--KEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLG 75 (591)
Q Consensus 3 ~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A--~~~gadlvvfPEl~ltGy~~~d~~~~~~~~-----~~~~~~l~~la~~ 75 (591)
.||||++|+++..+|++.|++++.+++++| +++|+|||||||++++||.+.++....+.. ....+.|.++++
T Consensus 10 ~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~- 88 (291)
T 1f89_A 10 KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLAN- 88 (291)
T ss_dssp CEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHH-
T ss_pred cceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCChHHHHHHhhhhccCCCChHHHHHHHHHH-
Confidence 599999999966799999999999999999 889999999999999999765432222221 234455666665
Q ss_pred ccCCCeEEEEcc-eeeeC--CeeeEeEEEEe-CCEEEEEEecccC-----CCCCCcccccccccCCCCCcccccccchhh
Q 007749 76 DWTDGILCSFGM-PVIKG--SERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (591)
Q Consensus 76 ~~~~~i~iivG~-~~~~~--~~lyNsa~vi~-~G~il~~y~K~~L-----p~~~~f~E~r~F~~G~~~~~~~~~~~p~~~ 146 (591)
++++++++|. +++.+ +++||++++|+ +|++++.|+|+|| |.+..|.|.+||++|+..
T Consensus 89 --~~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~~f~~G~~~------------ 154 (291)
T 1f89_A 89 --KFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKS------------ 154 (291)
T ss_dssp --HSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCC------------
T ss_pred --HcCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccccccCCCCC------------
Confidence 5899999995 66655 78999999998 8999999999999 333356799999999754
Q ss_pred HhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEE
Q 007749 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVY 226 (591)
Q Consensus 147 ~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~ 226 (591)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...++ .+|..++++||.||++++
T Consensus 155 -------------~v~~~~~~~ig~~ICyD~~fpe-~~r~l~~~Ga~ll~~ps~~~~~~~~-~~~~~~~~~rA~en~~~v 219 (291)
T 1f89_A 155 -------------TTIDTKYGKFGVGICYDMRFPE-LAMLSARKGAFAMIYPSAFNTVTGP-LHWHLLARSRAVDNQVYV 219 (291)
T ss_dssp -------------EEEEETTEEEEECCGGGGGCHH-HHHHHHHTTEEEEEEECCCBTTHHH-HHHHHHHHHHHHHHTSEE
T ss_pred -------------ceEecCCeeEEEEEecccCchH-HHHHHHhhCCCEEEECCcCCCCCcH-HHHHHHHHHHHHHcCCEE
Confidence 2899999999999999999996 7889999999999999998875554 356788999999999999
Q ss_pred EEEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 227 MYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 227 v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
+++|++|...++..|.|+|+|+ |+|+++++++. ++++++++||++.++..|.+.+.+++
T Consensus 220 v~~n~~G~~~~~~~~~G~S~ii~p~G~vl~~~~~----~e~~l~~~id~~~~~~~R~~~~~~~~ 279 (291)
T 1f89_A 220 MLCSPARNLQSSYHAYGHSIVVDPRGKIVAEAGE----GEEIIYAELDPEVIESFRQAVPLTKQ 279 (291)
T ss_dssp EEECCCCCTTSSSCBCCCCEEECTTSCEEEECCS----SSEEEEEEECHHHHHHHHHHSCCCCC
T ss_pred EEecCccCCCCCCeeeeEEEEECCCCCEEEecCC----CCeEEEEEECHHHHHHHHHhCChhHh
Confidence 9999999654678899999999 99999999864 24799999999999999987665543
No 11
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=100.00 E-value=5.4e-44 Score=368.27 Aligned_cols=258 Identities=18% Similarity=0.210 Sum_probs=208.2
Q ss_pred CceEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccc----hhhHH--HHHHHHHHH
Q 007749 2 RLLKVATCNLNNWA--LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL----DTVTH--AWECLKDLL 73 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~--~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~----~~~~~--~~~~l~~la 73 (591)
+.||||++|+++.. +|++.|++++.+++++|+++|||||||||++++||.+.+++..+ .+.+. ..+.++.|+
T Consensus 2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (303)
T 1uf5_A 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF 81 (303)
T ss_dssp CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHH
Confidence 46999999999887 99999999999999999999999999999999999876533221 11110 112233444
Q ss_pred hcccCCCeEEEEcceeee-CC---eeeEeEEEEe-CCEEEEEEecccCCCCCC------c--ccccccccCC-CCCcccc
Q 007749 74 LGDWTDGILCSFGMPVIK-GS---ERYNCQVLCL-NRKIIMIRPKLWLANDGN------Y--RELRWFTAWK-QKDQLED 139 (591)
Q Consensus 74 ~~~~~~~i~iivG~~~~~-~~---~lyNsa~vi~-~G~il~~y~K~~Lp~~~~------f--~E~r~F~~G~-~~~~~~~ 139 (591)
+.++++++++++|++++. ++ ++||++++|+ +|+++++|+|+|||++++ | .|.+||++|+ ..
T Consensus 82 ~~a~~~~~~iv~G~~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~~~~~~E~~~f~~G~~~~----- 156 (303)
T 1uf5_A 82 EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGF----- 156 (303)
T ss_dssp HHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSCS-----
T ss_pred HHHHHhCeEEEEeeeEecCCCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccccccccchhhccCCCCCC-----
Confidence 444458999999998874 45 8999999998 699999999999984443 3 6899999997 43
Q ss_pred cccchhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcc---ccc-----chhHH
Q 007749 140 FQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH---QLR-----KLDYR 211 (591)
Q Consensus 140 ~~~p~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~---~~g-----k~~~r 211 (591)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|+++++ ..+ ...+|
T Consensus 157 --------------------~v~~~~~~~ig~~ICyD~~fpe-~~r~l~~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
T 1uf5_A 157 --------------------PVYDVDAAKMGMFIANDRRWPE-AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHH 215 (303)
T ss_dssp --------------------CEEEETTEEEEECCGGGGGCHH-HHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHH
T ss_pred --------------------ceEecCCceEEEEEecCccCHH-HHHHHHHCCCCEEEEecCCccccccccCCccccHHHH
Confidence 2899999999999999999996 678999999999977655433 222 23345
Q ss_pred HHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhcc-CCchhh
Q 007749 212 IRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS-ISSFQE 289 (591)
Q Consensus 212 ~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~-~~~~~~ 289 (591)
..++++||.||+++++++|++|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.++..|.+ .+.+++
T Consensus 216 ~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vl~~~~~~~---~~~l~~~id~~~~~~~R~~~~~~~~~ 291 (303)
T 1uf5_A 216 LLSMQAGSYQNGAWSAAAGKAGME-ENCMLLGHSCIVAPTGEIVALTTTLE---DEVITAAVDLDRCRELREHIFNFKQH 291 (303)
T ss_dssp HHHHHHHHHHHTCEEEEEEBCEEE-TTEEECCCCEEECTTSCEEEECCSSS---SEEEEEEEEGGGGHHHHTTTTCHHHH
T ss_pred HHHHHhhhhcCCcEEEEECccccc-CCccccceeEEECCCCCEeccCCCCC---CcEEEEEEcHHHHHHHHhhcccchhc
Confidence 567899999999999999999987 567899999999 9999999988653 3799999999999999988 676655
No 12
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=100.00 E-value=9.1e-43 Score=371.95 Aligned_cols=256 Identities=17% Similarity=0.139 Sum_probs=199.7
Q ss_pred CceEEEEEecCCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc--c-----cccchhhHHHHH
Q 007749 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED--H-----FLELDTVTHAWE 67 (591)
Q Consensus 2 ~~~kVAl~Q~~~~~-------~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d--~-----~~~~~~~~~~~~ 67 (591)
++||||++|+++.. +|++.|++++.+++++|+++|||||||||++++||.... . +..+.......+
T Consensus 71 ~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~ 150 (405)
T 2vhh_A 71 RIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTK 150 (405)
T ss_dssp CEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHH
T ss_pred CCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHH
Confidence 46999999998642 578999999999999999999999999999999996421 0 111110122344
Q ss_pred HHHHHHhcccCCCeEEEEcceeee---CCeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccc
Q 007749 68 CLKDLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (591)
Q Consensus 68 ~l~~la~~~~~~~i~iivG~~~~~---~~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p 143 (591)
.|.++++ +++++|++|++++. ++++||++++|+ +|+++++|+|+|||+++.|.|.+||++|+...
T Consensus 151 ~l~~lA~---~~~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g~f~E~~~f~~G~~~~-------- 219 (405)
T 2vhh_A 151 MLAELAK---AYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGH-------- 219 (405)
T ss_dssp HHHHHHH---HTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC----------CCCCSCC--------
T ss_pred HHHHHHH---HCCEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCCCcCcccceeCCCCCC--------
Confidence 5566655 58999999999876 578999999998 89999999999999998899999999997521
Q ss_pred hhhHhhccCccccccceeEEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcC
Q 007749 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (591)
Q Consensus 144 ~~~~~~~~~~~vp~G~~v~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~ 223 (591)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...+. .+|..++++||.+|+
T Consensus 220 ----------------~vf~~~~~riG~~ICyD~~fPe-~~r~la~~GAdill~psa~~~~~~~-~~w~~l~raRAiEn~ 281 (405)
T 2vhh_A 220 ----------------PVFETEFGKLAVNICYGRHHPQ-NWMMFGLNGAEIVFNPSATIGRLSE-PLWSIEARNAAIANS 281 (405)
T ss_dssp ----------------CEEEETTEEEEECCGGGGGCHH-HHHHHHHTTCSEEEEEECCBCTTTH-HHHHHHHHHHHHHHT
T ss_pred ----------------eeEEECCEEEEEEEeccccChH-HHHHHHHcCCCEEEEcccCCCCCCH-HHHHHHHHHHHHHcC
Confidence 2899999999999999999996 6788999999999999998754443 366778999999999
Q ss_pred cEEEEEcCCCCCC---------------CceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCch
Q 007749 224 GVYMYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (591)
Q Consensus 224 ~~~v~aN~~G~~~---------------~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~ 287 (591)
++++++|++|.+. +...|.|+|+|+ |+|+++++++.++ +++++++||++.++..|.+++.+
T Consensus 282 ~~Vv~aN~vG~~~~~~~~~~~~g~~~~~~~~~f~G~S~IidP~G~vla~~~~~~---e~il~aeiDl~~~~~~R~~~p~~ 358 (405)
T 2vhh_A 282 YFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDK---DGLLVVELDLNLCRQVKDFWGFR 358 (405)
T ss_dssp SEEEEEECEECCCCC-----------------EECCCCCBCTTSCBCCCCCSSS---CEEEEEEEETTHHHHHHHHHCTT
T ss_pred ceEEEeccccccccccccccccCccccccCceeccccceECCCCCEeeccCCCC---CeEEEEEECHHHHHHHHHhCCch
Confidence 9999999998762 225789999999 9999999987664 47999999999999999876655
Q ss_pred hh
Q 007749 288 QE 289 (591)
Q Consensus 288 ~~ 289 (591)
++
T Consensus 359 ~~ 360 (405)
T 2vhh_A 359 MT 360 (405)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 13
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=100.00 E-value=1.3e-41 Score=342.40 Aligned_cols=212 Identities=23% Similarity=0.326 Sum_probs=162.6
Q ss_pred CCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCC
Q 007749 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (591)
Q Consensus 325 ~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~ 404 (591)
+++.+++.. ++.||+||++++|+++++||||||+|||++|+++. +++++|+.. -+..+.
T Consensus 18 ~~~~~~i~~-~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~~----~A~~~Lg~~----------~~~~~~------ 76 (279)
T 3q4g_A 18 IDPQFEIER-RVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLAQ----LAVEELNQQ----------HNTTEY------ 76 (279)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHH----HHHHHHHHH----------TTCSCC------
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHH----HHHHHhCcc----------cccCCc------
Confidence 455555555 67999999999999999999999999999888762 234554310 000000
Q ss_pred hHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCC-ceEEEecHHHHHHHHH----HhhhhhCCCCCcccCCCCCCCch
Q 007749 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLS----LFQTLTGKRPCYKVDGGSNVENL 479 (591)
Q Consensus 405 ~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~-~~~~i~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~ 479 (591)
++++++|| ++++.+.++|+++|+.||+ +|++|||+++++++.. .|.+.+ .. .++....|+
T Consensus 77 -------~v~av~~p--~~~~~~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~~-~~-----~~~~~~~~~ 141 (279)
T 3q4g_A 77 -------QFIAVRLP--YGEQKDEDEAQLALSFIRPTHSVSVNIKAGVDGLHAASHHALANTG-LI-----PSDPAKVDF 141 (279)
T ss_dssp -------EEEEEECC--SSSCSCHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHHT-CS-----CSSCCCHHH
T ss_pred -------eEEEEEec--CCChHHHHHHHHHHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhhc-cc-----ccCCCcccc
Confidence 59999999 3466778999999999999 8999999999998876 565432 11 012235789
Q ss_pred hhhhhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcC
Q 007749 480 GLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLG 559 (591)
Q Consensus 480 ~~~N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~ 559 (591)
+++|+|||+||.++|.+|+.+ | .+|+||||+||.++||+|+|||++++++||++|+|++||+|++| +|
T Consensus 142 ~~~NiqaR~R~~~Ly~~A~~~-------g-~lVlgTgn~sE~~~Gy~TkyGD~~~di~Pl~dl~Kt~Vr~LA~~----lg 209 (279)
T 3q4g_A 142 IKGNVKARARMVAQYEIAGYV-------G-GLVLGTDHSAENITGFYTKFGDGACDLAPLFGLNKRQVRLLAKT----LG 209 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------T-EEEBCCCCHHHHHHTCSCTTTTTCCSBCTTTTCCHHHHHHHHHH----TT
T ss_pred hhhhHHHHHHHHHHHHHHHHC-------C-CEEecCccHHhhhccchhhcCCcccceeecCCCcHHHHHHHHHH----hC
Confidence 999999999999999888755 6 59999999999999999999999999999999999999999655 66
Q ss_pred CccccccccCCCCCCcccCCCCccccccc
Q 007749 560 YSSLAEIEAAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 560 ~~i~~~i~~~~psaeL~p~~~~~~q~de~ 588 (591)
+| ++|++|||||||+|+. ..|+||+
T Consensus 210 iP--~~i~~K~PSa~L~~~~--~~q~DE~ 234 (279)
T 3q4g_A 210 AP--EQLVYKTPTADLEELA--PQKADEA 234 (279)
T ss_dssp CC--HHHHTCCCSCCC-------------
T ss_pred Cc--HHHhcCCCCCCcCCCC--CCCCCHH
Confidence 55 9999999999998743 2689886
No 14
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=100.00 E-value=1.2e-41 Score=356.08 Aligned_cols=242 Identities=18% Similarity=0.150 Sum_probs=199.3
Q ss_pred CceEEEEEecCC----CCCCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCcCCCCCC--cccccc-hhhHHHHHHHHHH
Q 007749 2 RLLKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCE--DHFLEL-DTVTHAWECLKDL 72 (591)
Q Consensus 2 ~~~kVAl~Q~~~----~~~d~~~N~~~i~~~i~~A~~--~gadlvvfPEl~ltGy~~~--d~~~~~-~~~~~~~~~l~~l 72 (591)
..||||++|+++ ..+|++.|++++.+++++|++ +|+|||||||++++||... ++.... .... ..++.|
T Consensus 11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~---~~~~~l 87 (341)
T 2uxy_A 11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAEMMETAVAIPG---EETEIF 87 (341)
T ss_dssp TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSHHHHHHHCBCSSS---HHHHHH
T ss_pred CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCCHHHHHHHhccCCC---HHHHHH
Confidence 369999999994 457999999999999999987 7999999999999998643 111000 0012 234444
Q ss_pred HhcccCCCeEEEEcce-eeeC----CeeeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhh
Q 007749 73 LLGDWTDGILCSFGMP-VIKG----SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (591)
Q Consensus 73 a~~~~~~~i~iivG~~-~~~~----~~lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~ 146 (591)
++.++++++++++|++ ++.+ +++||++++|+ +|++++.|+|+||+ .|.++|++|+..
T Consensus 88 ~~~a~~~~i~iv~G~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf-----~e~~~f~pG~~~------------ 150 (341)
T 2uxy_A 88 SRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPW-----CPIEGWYPGGQT------------ 150 (341)
T ss_dssp HHHHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCBCCCCC------------
T ss_pred HHHHHHhCcEEEEEeeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccC-----CCccceeCCCCc------------
Confidence 4444468999999998 7653 34999999999 89999999999974 467889999764
Q ss_pred HhhccCccccccceeEEe-CCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcE
Q 007749 147 SVALKQKSVPFGYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (591)
Q Consensus 147 ~~~~~~~~vp~G~~v~~~-~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~ 225 (591)
.+|++ .|.|||++||||+|||+ +.|.++.+|||+|++|++|++ .+..+|..++++||.||+++
T Consensus 151 -------------~v~~~~~G~riG~~ICyD~~fpe-~~r~l~~~Gadlll~psa~~~--~~~~~~~~l~~arA~En~~~ 214 (341)
T 2uxy_A 151 -------------YVSEGPKGMKISLIIXDDGNYPE-IWRDCAMKGAELIVRCQGYMY--PAKDQQVMMAKAMAWANNCY 214 (341)
T ss_dssp -------------CCEECGGGCEEEEEEGGGGGSHH-HHHHHHHTTCSEEEEEECCBT--TCHHHHHHHHHHHHHHHTCE
T ss_pred -------------eEEECCCCCEEEEEEccCCcCcH-HHHHHHHcCCCEEEEcCCCCC--CcHHHHHHHHHHHHHhCCcE
Confidence 27888 57799999999999996 788999999999999999876 34567888999999999999
Q ss_pred EEEEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhcc
Q 007749 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (591)
Q Consensus 226 ~v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~ 283 (591)
++++|++|.+ ++..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|..
T Consensus 215 vv~an~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~---e~il~a~id~~~~~~~R~~ 269 (341)
T 2uxy_A 215 VAVANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEE---MGIQYAQLSLSQIRDARAN 269 (341)
T ss_dssp EEEEECEEEC-SSCEEECCCEEECTTSCEEEECCSCT---TCEEEEEEEHHHHHHHHHH
T ss_pred EEEECCCCCC-CCceeeeEEEEECCCCCEEEECCCCC---CEEEEEEEcHHHHHHHHhh
Confidence 9999999988 678999999999 9999999998764 3799999999998877754
No 15
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=100.00 E-value=2.6e-41 Score=365.94 Aligned_cols=254 Identities=17% Similarity=0.082 Sum_probs=210.5
Q ss_pred CCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc--cchhhHHHHHHHHHHHhcccC
Q 007749 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL--ELDTVTHAWECLKDLLLGDWT 78 (591)
Q Consensus 1 m~~~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~--~~~~~~~~~~~l~~la~~~~~ 78 (591)
|+.||||++|+++. +|++.|++++.+++++|+++|||||||||++++||...+... ....... .++.|++.+++
T Consensus 12 ~~~~kVa~vQ~~~~-~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~~~~~~~~a~~~~~~---~~~~l~~~A~~ 87 (440)
T 1ems_A 12 TGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCE---YMEKYRELARK 87 (440)
T ss_dssp CSEEEEEEECBCCC-SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred cCCceEEEEecCCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcchhHHHHhhccCCCH---HHHHHHHHHHH
Confidence 45699999999985 899999999999999999999999999999999987532111 0111122 34444444446
Q ss_pred CCeEEEEccee--e--eCCeeeEeEEEEe-CCEEEEEEecccC-----CCCCCcccccccccCCCCCcccccccchhhHh
Q 007749 79 DGILCSFGMPV--I--KGSERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEISV 148 (591)
Q Consensus 79 ~~i~iivG~~~--~--~~~~lyNsa~vi~-~G~il~~y~K~~L-----p~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~ 148 (591)
+++++++|++. . .++++||++++|+ +|++++.|+|+|| |.+..|.|.+||++|+...
T Consensus 88 ~~i~iv~G~~~~~e~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~~G~~~~------------- 154 (440)
T 1ems_A 88 HNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMI------------- 154 (440)
T ss_dssp TTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSCC-------------
T ss_pred cCeEEEeccccccccCCCCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCcccccccccCCCCCc-------------
Confidence 89999999765 3 3568999999997 8999999999999 4444567999999998642
Q ss_pred hccCcccccccee-EEeCCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEE
Q 007749 149 ALKQKSVPFGYGF-IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYM 227 (591)
Q Consensus 149 ~~~~~~vp~G~~v-~~~~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v 227 (591)
+ |+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...++. +|..++++||.||+++++
T Consensus 155 ------------~~~~~~~~~iG~~ICyD~~fpe-~~r~l~~~Ga~il~~psa~~~~~~~~-~~~~~~~arA~En~~~vv 220 (440)
T 1ems_A 155 ------------PPVDTPIGRLGLSICYDVRFPE-LSLWNRKRGAQLLSFPSAFTLNTGLA-HWETLLRARAIENQCYVV 220 (440)
T ss_dssp ------------CCEEETTEEECCCCGGGGGCHH-HHHHHHHTTCSEEECCBCCCHHHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred ------------eeEECCCeeEEEEEeccccChH-HHHHHHHcCCcEEEECCcCCCCCcHH-HHHHHHHHHHHhcCcEEE
Confidence 5 89999999999999999996 78899999999999999998765543 677889999999999999
Q ss_pred EEcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCchhh
Q 007749 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQE 289 (591)
Q Consensus 228 ~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~~~ 289 (591)
++|++|.+.+...|.|+|+|+ |+|+++++++. ++++++++||++.++..|...+.+++
T Consensus 221 ~an~~G~~~~~~~~~G~S~ii~P~G~vla~~~~----~e~il~a~idl~~~~~~R~~~~~~~~ 279 (440)
T 1ems_A 221 AAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCSE----RVDMCFAEIDLSYVDTLREMQPVFSH 279 (440)
T ss_dssp ECBBEEEEETTEEEECCCEEECTTSCEEEECCS----SSCEEEEEEEHHHHHHHHHHSCGGGS
T ss_pred EecccccCCCCceeeeeeEEECCCCCeeccCCC----CCcEEEEEeCHHHHHHHHHhCChhhh
Confidence 999999775568899999999 99999999862 24799999999999999988777654
No 16
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=100.00 E-value=2.3e-41 Score=352.97 Aligned_cols=246 Identities=20% Similarity=0.176 Sum_probs=201.7
Q ss_pred ceEEEEEecCC----CCCCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCcCCCCCCcccccc---hhhHHHHHHHHHHH
Q 007749 3 LLKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCEDHFLEL---DTVTHAWECLKDLL 73 (591)
Q Consensus 3 ~~kVAl~Q~~~----~~~d~~~N~~~i~~~i~~A~~--~gadlvvfPEl~ltGy~~~d~~~~~---~~~~~~~~~l~~la 73 (591)
.||||++|+++ ..+|++.|++++.+++++|++ +|+|||||||++++||...+..... .......+.|.+++
T Consensus 13 ~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a 92 (334)
T 2dyu_A 13 GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKAC 92 (334)
T ss_dssp CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHHHHH
T ss_pred ccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCChhHHHHhhccCCCHHHHHHHHHH
Confidence 59999999984 357899999999999999987 7999999999999998654311110 11122334455554
Q ss_pred hcccCCCeEEEEcceeeeC-Ce--eeEeEEEEe-CCEEEEEEecccCCCCCCcccccccccCCCCCcccccccchhhHhh
Q 007749 74 LGDWTDGILCSFGMPVIKG-SE--RYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVA 149 (591)
Q Consensus 74 ~~~~~~~i~iivG~~~~~~-~~--lyNsa~vi~-~G~il~~y~K~~Lp~~~~f~E~r~F~~G~~~~~~~~~~~p~~~~~~ 149 (591)
+ ++++++++|++++.+ ++ +||++++|+ +|++++.|+|+||+ .|.++|++|+...
T Consensus 93 ~---~~~i~iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hlf-----~e~~~f~~G~~~~-------------- 150 (334)
T 2dyu_A 93 K---EAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPW-----NPIEPWYPGDLGM-------------- 150 (334)
T ss_dssp H---HHTCEEEEEEEECCSSTTSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCCCCCSCC--------------
T ss_pred H---HhCeEEEEeeEEECCCCCceeEEEEEEECCCCCEEEEEeeccCC-----CCcccCcCCCCCc--------------
Confidence 4 579999999998753 44 999999999 89999999999974 4667899987531
Q ss_pred ccCccccccceeEEe-CCcceeEeeecccCCCChHHHHHHhCCCcEEEEecCCcccccchhHHHHHHHHHHHHcCcEEEE
Q 007749 150 LKQKSVPFGYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMY 228 (591)
Q Consensus 150 ~~~~~vp~G~~v~~~-~~~~iGv~IC~D~~~pe~~~r~la~~Gadlil~psas~~~~gk~~~r~~l~~~~a~e~~~~~v~ 228 (591)
.+|++ .|.|||++||||+|||+ ..|.++.+|||+|++|++|+... ..+|..++++||.||++++++
T Consensus 151 ----------~v~~~~~g~~iG~~ICyD~~fpe-~~r~~~~~Gadlil~psaw~~~~--~~~~~~~~~arA~En~~~vv~ 217 (334)
T 2dyu_A 151 ----------PVCEGPGGSKLAVCICHDGMIPE-LAREAAYKGCNVYIRISGYSTQV--NDQWILTNRSNAWHNLMYTVS 217 (334)
T ss_dssp ----------CCEECGGGCEEEEEEGGGGGCHH-HHHHHHHTTCSEEEEEESSCTTS--HHHHHHHHHHHHHHHTCEEEE
T ss_pred ----------eeEECCCCCEEEEEEECCCCchH-HHHHHHHcCCCEEEEeCCCCCCc--HHHHHHHHHHHHHhCCCEEEE
Confidence 27887 56799999999999996 78899999999999999987543 346788899999999999999
Q ss_pred EcCCCCCCCceeeeccEEEE-eCCcEEEecCCCCCCceeEEEEEEechhhhhhhccCCch
Q 007749 229 SNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287 (591)
Q Consensus 229 aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~f~e~~~~~v~a~iDl~~~~~~R~~~~~~ 287 (591)
+|++|.+ ++..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|.+.+..
T Consensus 218 an~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~---e~il~a~idl~~~~~~R~~~~~~ 273 (334)
T 2dyu_A 218 VNLAGYD-NVFYYFGEGQICNFDGTTLVQGHRNP---WEIVTGEIYPKMADNARLSWGLE 273 (334)
T ss_dssp EECSBSS-SSCCCCCEEEEECTTSCEEEECCCCT---TCEEEEEECHHHHHHHHHHCSTT
T ss_pred ECCCcCC-CCeeeeeEEEEECCCCCEeeecCCCC---CeEEEEEEcHHHHHHHHhhCchh
Confidence 9999988 678899999999 9999999998664 37999999999999999876553
No 17
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=100.00 E-value=3.6e-39 Score=324.52 Aligned_cols=210 Identities=24% Similarity=0.372 Sum_probs=165.6
Q ss_pred CCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCC
Q 007749 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (591)
Q Consensus 325 ~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~ 404 (591)
+++.+++. .++.||+||++++|+++++||||||+||+++|+|+. +++++| |.++. +
T Consensus 24 ~~~~~~i~-~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~----~A~daL--------------G~~~~---~-- 79 (285)
T 3dpi_A 24 FDARDEAE-RRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQ----LAVERL--------------RASGY---D-- 79 (285)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHH----HHHHHH--------------HHTTC---C--
T ss_pred CCHHHHHH-HHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHH----HHHHHh--------------cccCc---c--
Confidence 45555554 457999999999999999999999999999887763 224554 32210 0
Q ss_pred hHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhC-CceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhh
Q 007749 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIG-SWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQN 483 (591)
Q Consensus 405 ~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N 483 (591)
..+++++||. +++.+.++|+++|+.|| ++|++|||+++++++.+.+... |+.+. +....|++++|
T Consensus 80 ------~~viav~~p~--~~~~~~~dA~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~~-g~~~~-----~~~~~~~~~~N 145 (285)
T 3dpi_A 80 ------ARFVAMRLPY--GAQHDEADARRALAFVRADETLTVDVKPAADAMLAALAAG-GLAYL-----DHAQQDFVLGN 145 (285)
T ss_dssp ------CEEEEEECCS--CC---CHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHT-TCCCC-----CHHHHHHHHHH
T ss_pred ------cEEEEEEcCC--CCHHHHHHHHHHHHHcCCCcEEEEEChHHHHHHHHHHHhc-Ccccc-----ccCCCchhhhh
Confidence 0478999984 56678899999999999 7999999999999998887752 43321 11125789999
Q ss_pred hhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccc
Q 007749 484 IQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSL 563 (591)
Q Consensus 484 ~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~ 563 (591)
+|+|+||.++|.+|+.. | .+|+||||+||.++||+|+|||++++++||++++|++||+| ++.+|+|
T Consensus 146 iqaR~Rm~~L~~~A~~~-------g-~lVlgTgn~sE~~~Gy~T~~GD~~~~~~Pl~~l~K~eV~~l----a~~lg~p-- 211 (285)
T 3dpi_A 146 IKARERMIAQYAVAGAR-------N-GVVIGTDHAAESVMGFFTKFGDGGADVLPLAGLTKRRVRAL----ARMLGAD-- 211 (285)
T ss_dssp HHHHHHHHHHHHHHHHT-------T-EEEBCCCCHHHHHHHHHHCCCCCCCSBCTTTTCCHHHHHHH----HHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHC-------C-CEEEeCccHHhhhCCcccccCCCceeEeeecCCcHHHHHHH----HHHcCCC--
Confidence 99999999999877654 6 59999999999999999999999999999999999999999 5556765
Q ss_pred cccccCCCCCCcccCCCCccccccc
Q 007749 564 AEIEAAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 564 ~~i~~~~psaeL~p~~~~~~q~de~ 588 (591)
++|++|||||||||+. ..|+||+
T Consensus 212 ~~i~~k~pSa~L~~l~--~~q~DE~ 234 (285)
T 3dpi_A 212 EPLVLKTPTADLETLR--PQRPDEH 234 (285)
T ss_dssp HHHHTCCCHHHHGGGS--CSCC--C
T ss_pred HHHhcCCCCCCcccCC--CCCCcHH
Confidence 9999999999999753 2588886
No 18
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=100.00 E-value=2.3e-37 Score=312.66 Aligned_cols=207 Identities=25% Similarity=0.319 Sum_probs=159.4
Q ss_pred CCCHHHHHhchhHHHHHHHHHhC-CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCC
Q 007749 325 HSPEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPT 403 (591)
Q Consensus 325 ~~~~~e~~~~~~~~l~d~l~~~~-~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~ 403 (591)
+++.+++.. ++.+|+||++++| .++++||||||+|||++|+|+. +++++|+.+ -+.+++
T Consensus 17 ~~~~~~i~~-~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~----~a~~~lg~~----------~~~~~~----- 76 (275)
T 1wxi_A 17 INAEEEIRR-SVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQ----MAINELRLE----------TGNESL----- 76 (275)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHH----HHHHHHHHH----------HCCTTC-----
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHH----HHHHHhccc----------cccccc-----
Confidence 456667766 7899999999999 9999999999999999988763 223333210 000000
Q ss_pred ChHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCC-ceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhh
Q 007749 404 DSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQ 482 (591)
Q Consensus 404 ~~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 482 (591)
++++++||. .++.+.++|+++|+.||+ +|++|||+++++++.+.+.. .|.+ ..+++.+
T Consensus 77 --------~v~av~~~~--~~~~~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~-~g~~----------~~~~~~~ 135 (275)
T 1wxi_A 77 --------QFIAVRLPY--GVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALRE-AGIE----------LSDFVRG 135 (275)
T ss_dssp --------EEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH-HTCC----------CCHHHHH
T ss_pred --------eEEEEEeCC--CCccCHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHh-cCCC----------CCCchhh
Confidence 489999994 455689999999999999 99999999999998887776 3433 2578999
Q ss_pred hhhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCcc
Q 007749 483 NIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSS 562 (591)
Q Consensus 483 N~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i 562 (591)
|+|+|+|+.++|.+|+.. | .+|+||+|++|..+||+|+|||++++++||++++|++||+| ++.+|+|
T Consensus 136 N~~aR~r~~~l~~~A~~~-------g-~lvlgTgn~~E~~~Gy~t~~gd~~~~~~PL~~l~K~eVr~l----a~~lglp- 202 (275)
T 1wxi_A 136 NEKARERMKAQYSIAGMT-------S-GVVVGTDHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQL----LAALACP- 202 (275)
T ss_dssp HHHHHHHHHHHHHHHHHT-------T-EEEBCCCCHHHHTTTCSCTTTTTCCSBCTTTTCCHHHHHHH----HHHTTCC-
T ss_pred hhhhhHHHHHHHHHHHHC-------C-CEEEECccHHHHccCcccccCCCccceeeccCCCHHHHHHH----HHHhCCc-
Confidence 999999999999887644 6 69999999999999999999999999999999999999999 5557876
Q ss_pred ccccccCCCCCCcccCCCCccccccc
Q 007749 563 LAEIEAAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 563 ~~~i~~~~psaeL~p~~~~~~q~de~ 588 (591)
+.|++|||||||++.. ..|+||+
T Consensus 203 -~~i~~k~psa~L~~~~--~~q~De~ 225 (275)
T 1wxi_A 203 -EHLYKKAPTADLEDDR--PSLPDEV 225 (275)
T ss_dssp -GGGTSCC---------------CHH
T ss_pred -HhhccCCCCCcccCCC--CCCCCHH
Confidence 9999999999998632 2688875
No 19
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=100.00 E-value=4.6e-37 Score=306.29 Aligned_cols=196 Identities=29% Similarity=0.371 Sum_probs=168.8
Q ss_pred HHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 007749 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (591)
.++.+..++.||+||++++|.++++||||||+||+++|+++ .++ +.+
T Consensus 9 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~-------~~~---------------~~~----------- 55 (249)
T 3fiu_A 9 PKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLA-------VKT---------------GLP----------- 55 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHH-------HHT---------------TSC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH-------HHh---------------CCC-----------
Confidence 46789999999999999999999999999999999999887 333 221
Q ss_pred hhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 408 ~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
.+ +++||+..+++.+.++|+++|+.||++|+++++++.++++.+.+...++.. ..+++++.+|+|+|
T Consensus 56 ----~~-av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~Ni~~r 122 (249)
T 3fiu_A 56 ----TT-ALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLASTQSFTNLQ--------NNRQLVIKGNAQAR 122 (249)
T ss_dssp ----EE-EEECCCTTSCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC--------------CHHHHHHHHHH
T ss_pred ----CE-EEEecCCCCCHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHHHhhccCC--------CCcChhHHHHHHHH
Confidence 35 999998878899999999999999999999999999988877666433211 13478999999999
Q ss_pred hcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccc
Q 007749 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~ 567 (591)
+|+.++|.+|+.. | .+++||||+||..+||+|+|||+.++++||++++|++||+| ++.+|+| ++|+
T Consensus 123 ~R~~~l~~~A~~~-------g-~~vl~TGn~sE~~~G~~t~~gd~~~~i~PL~~l~K~eVr~l----A~~lglp--~~i~ 188 (249)
T 3fiu_A 123 LRMMYLYAYAQQY-------N-RIVIGTDNACEWYMGYFTKFGDGAADILPLVNLKKSQVFEL----GKYLDVP--KNIL 188 (249)
T ss_dssp HHHHHHHHHHHHH-------T-EEEBCCCCHHHHHHTCSCTTTTTCCSBCTTTTCCHHHHHHH----HHHTTCC--HHHH
T ss_pred HHHHHHHHHHHHc-------C-CEEEECCCHHHHhcCchhccCCCCcceeecccCcHHHHHHH----HHHcCCc--HHHc
Confidence 9999999887654 6 69999999999999999999999999999999999999999 5557766 9999
Q ss_pred cCCCCCCcccCCCCccccccc
Q 007749 568 AAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 568 ~~~psaeL~p~~~~~~q~de~ 588 (591)
+|||||||+| .|+||+
T Consensus 189 ~k~psa~L~~-----~q~de~ 204 (249)
T 3fiu_A 189 DKAPSAGLWQ-----GQTDED 204 (249)
T ss_dssp HSCCCCCSST-----TCCHHH
T ss_pred cCCCCCccCC-----CCCCHH
Confidence 9999999999 588875
No 20
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=100.00 E-value=1.6e-36 Score=306.46 Aligned_cols=206 Identities=29% Similarity=0.436 Sum_probs=169.5
Q ss_pred CCCHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCC
Q 007749 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (591)
Q Consensus 325 ~~~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~ 404 (591)
+++.+++.. ++.+|+||++++|.++++||||||+|||++|+|+. ++.+++ |.++.
T Consensus 16 ~~~~~~i~~-~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La~----~a~~~l--------------g~~~~------ 70 (271)
T 1kqp_A 16 IDPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQ----LAVESI--------------REEGG------ 70 (271)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHH----HHHHHH--------------HHTTC------
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHHH----HHHHHh--------------cccCC------
Confidence 355566666 78999999999999999999999999999988763 222332 22100
Q ss_pred hHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCC-ceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhh
Q 007749 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQN 483 (591)
Q Consensus 405 ~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N 483 (591)
..++++++||. .++.+.++|+++|+.||+ +|++|+|+++++.+.+.+...++.++ .+++.+|
T Consensus 71 -----~~~v~av~~~~--~~~~d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~~----------~~~~~~N 133 (271)
T 1kqp_A 71 -----DAQFIAVRLPH--GTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQL----------TDFNKGN 133 (271)
T ss_dssp -----CCEEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCCC----------CHHHHHH
T ss_pred -----CceEEEEEeCC--CCCCCHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCCC----------cchhhhh
Confidence 00589999994 344579999999999999 99999999999999888887655433 5788999
Q ss_pred hhhhhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccc
Q 007749 484 IQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSL 563 (591)
Q Consensus 484 ~qaR~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~ 563 (591)
+|+|+|+.++|.+|+.. | .+|+||+|++|..+||+|+|||++++++||++++|++||+| ++.+|+|
T Consensus 134 ~~aR~r~~~l~~~A~~~-------g-~lvl~tgn~~E~~~Gy~t~~gd~~~~~~Pl~~l~K~eVr~l----a~~lglp-- 199 (271)
T 1kqp_A 134 VKARTRMIAQYAIGGQE-------G-LLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTL----LKELGAP-- 199 (271)
T ss_dssp HHHHHHHHHHHHHHHHH-------T-CEEBCCCCHHHHTTTCSCTTTTTCCSBCTTTTCCHHHHHHH----HHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHC-------C-CEEEECccHHHhccCCccccccccccccccccCCHHHHHHH----HHHcCCC--
Confidence 99999999999887644 6 59999999999999999999999999999999999999999 5557876
Q ss_pred cccccCCCCCCcccCCCCccccccc
Q 007749 564 AEIEAAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 564 ~~i~~~~psaeL~p~~~~~~q~de~ 588 (591)
+.|++|||||||++.. ..|+||+
T Consensus 200 ~~i~~k~psa~L~~~~--~~q~De~ 222 (271)
T 1kqp_A 200 ERLYLKEPTADLLDEK--PQQSDET 222 (271)
T ss_dssp THHHHSCCBCCCCSSS--TTCBHHH
T ss_pred HhhccCCCCcccccCC--CCCCCHH
Confidence 8999999999998631 2688875
No 21
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=100.00 E-value=4.5e-36 Score=298.97 Aligned_cols=191 Identities=27% Similarity=0.372 Sum_probs=154.7
Q ss_pred CHHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChH
Q 007749 327 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSR 406 (591)
Q Consensus 327 ~~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (591)
..++++.+++.||+||++++|.++++||||||+||+++|+++ .+++ |.
T Consensus 5 ~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~~--------------g~----------- 52 (249)
T 3p52_A 5 DWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------KRAL--------------KE----------- 52 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHH-------HHHH--------------TT-----------
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHH-------HHHc--------------CC-----------
Confidence 357899999999999999999999999999999999999887 3442 32
Q ss_pred HhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhh
Q 007749 407 EFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQA 486 (591)
Q Consensus 407 ~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qa 486 (591)
++++++||+..+++.+.++|+++|+.||++|++++++++++++.+.+. ...+...+|+|+
T Consensus 53 -----~v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~~~~---------------~~~~~~~~n~~~ 112 (249)
T 3p52_A 53 -----NVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSE---------------NTTLVSLGNFAA 112 (249)
T ss_dssp -----SEEEEECCSCCSSCHHHHHHHHHHHHHTCEEEECCCHHHHHHHHTTCS---------------CCCHHHHHHHHH
T ss_pred -----cEEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHHhcc---------------ccCCccHhHHHH
Confidence 599999999888889999999999999999999999998877643321 124678899999
Q ss_pred hhcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCcccccc
Q 007749 487 RIRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEI 566 (591)
Q Consensus 487 R~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i 566 (591)
|+|+.++|.+|+.. | .++++|+|+||..+||+|+|||+.++++||++++|++||++ ++.+|+| ++|
T Consensus 113 r~R~~~l~~~A~~~-------g-~~vl~tgn~se~~~g~~t~~gd~~~~i~PL~~l~K~eV~~l----a~~~gip--~~i 178 (249)
T 3p52_A 113 RIRMSLLYDYSALK-------N-SLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKSEIYAL----AKYLNLH--ENF 178 (249)
T ss_dssp HHHHHHHHHHHHHT-------T-EEEBCCCCHHHHHHTCSCTTTTTCCSEETTTTSCHHHHHHH----HHHTTCC--HHH
T ss_pred HHHHHHHHHHHHHC-------C-CeEEeCCCHHHHHccchhhhccccCccccccCCcHHHHHHH----HHHcCCc--HHh
Confidence 99999999877644 6 69999999999999999999999999999999999999999 5556766 899
Q ss_pred ccCCCCCCcccCCCCccccccc
Q 007749 567 EAAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 567 ~~~~psaeL~p~~~~~~q~de~ 588 (591)
++|||||||+| .|+||+
T Consensus 179 ~~k~psa~L~~-----~q~de~ 195 (249)
T 3p52_A 179 IKKAPSADLWE-----NQSDEA 195 (249)
T ss_dssp HHC-------------------
T ss_pred cCCCCCcccCC-----CCCCHH
Confidence 99999999998 488875
No 22
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.97 E-value=1.5e-31 Score=270.24 Aligned_cols=190 Identities=26% Similarity=0.290 Sum_probs=164.8
Q ss_pred HHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 007749 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (591)
.++++..++.+|++|+++++.++++|+||||+||+++++++ .+++ + .
T Consensus 5 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~-------~~~~--------------~-~----------- 51 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------QKVF--------------K-E----------- 51 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHHH--------------G-G-----------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHH-------HHhC--------------C-C-----------
Confidence 46889999999999999999999999999999999998887 3431 1 1
Q ss_pred hhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 408 ~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
+|++++||+..+++.+.++|+++|+.||++|++++|+++++.+.+.+.. ..+++.+|+|+|
T Consensus 52 ----~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~---------------~~~~~~~n~~~r 112 (268)
T 1xng_A 52 ----NAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKD---------------ASLTRKGNFCAR 112 (268)
T ss_dssp ----GEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHHHHHHHHHHCTT---------------CCHHHHHHHHHH
T ss_pred ----CEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHhhh---------------cCCchHHHHHHH
Confidence 4899999998888999999999999999999999999887776554432 146788999999
Q ss_pred hcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccc
Q 007749 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~ 567 (591)
+|+.+++.+|+.. | ..+++|||.+|..+||+|++||+..++.||++++|++|+++ ++.+|+| +.|+
T Consensus 113 ~R~~~l~~~A~~~-------g-~~vl~tg~~~E~~~Gy~t~~gd~~~~i~PL~~l~K~ev~~l----a~~~gip--~~i~ 178 (268)
T 1xng_A 113 LRMAFLYDYSLKS-------D-SLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYEL----ARRLNIP--KKIL 178 (268)
T ss_dssp HHHHHHHHHHHHH-------T-CEEBCCCCHHHHHHTCSCTTTTTCCSEETTTTSCHHHHHHH----HHHTTCC--HHHH
T ss_pred HHHHHHHHHHHHC-------C-CEEEECCcHHHHhcCcccccCCCCeeEEecCCCCHHHHHHH----HHHcCCc--HHHh
Confidence 9999999777643 6 58999999999999999999999999999999999999999 4446766 8899
Q ss_pred cCCCCCCcccCCCCccccccc
Q 007749 568 AAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 568 ~~~psaeL~p~~~~~~q~de~ 588 (591)
++||||||+| .|+||+
T Consensus 179 ~k~psa~l~~-----~q~de~ 194 (268)
T 1xng_A 179 NKPPSADLFV-----GQSDEK 194 (268)
T ss_dssp TSCCCCCSST-----TCCHHH
T ss_pred cCCCCcCcCC-----CCcchh
Confidence 9999999999 577775
No 23
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.97 E-value=9.4e-30 Score=255.69 Aligned_cols=186 Identities=27% Similarity=0.411 Sum_probs=157.3
Q ss_pred HHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 007749 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (591)
.++++..+..+|++| |.++++|+||||+||+++++++ .+++ +..
T Consensus 6 ~~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~-------~~~~--------------g~~----------- 49 (257)
T 2e18_A 6 YDKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLA-------TKAL--------------GKE----------- 49 (257)
T ss_dssp HHHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHH-------HHHH--------------CGG-----------
T ss_pred HHHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHH-------HHhc--------------CCC-----------
Confidence 367888899999998 7889999999999999998887 3442 211
Q ss_pred hhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 408 ~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
+|++++||... + .+.++|+++|+.||++|+++++++.++.+.+.+.. . ..+++.+|+|+|
T Consensus 50 ----~v~av~~~~~~-~-~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~~----~----------~~~~~~~n~~ar 109 (257)
T 2e18_A 50 ----KVLGLIMPYFE-N-KDVEDAKLVAEKLGIGYKVINIKPIVDSFVENLEL----N----------LDRKGLGNIMSR 109 (257)
T ss_dssp ----GEEEEECCSSC-S-THHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHCS----C----------CCHHHHHHHHHH
T ss_pred ----cEEEEEeCCCC-c-hHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHhcc----c----------cccchhHHHHHH
Confidence 48999999874 4 88999999999999999999999887776555432 1 246789999999
Q ss_pred hcHHHHHHHHccCcccccCCCCeEEEcCCchhhhhcccccccCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccc
Q 007749 488 IRMVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIE 567 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~~G~~t~~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~ 567 (591)
+|+.+++.+|+.. | ..+++|||.+|..+||+|++||...++.||++++|++|+++++ .+|+| ..++
T Consensus 110 ~r~~~l~~~A~~~-------g-~~vl~tg~~~e~~~Gy~t~~g~~~~~i~Pl~~l~K~ev~~la~----~~gip--~~i~ 175 (257)
T 2e18_A 110 TRMIMLYAHANSL-------G-RIVLGTSNRSEFLTGYFTKWGDGASDYAPIINLYKTEVWEIAK----RIGVP--ERIV 175 (257)
T ss_dssp HHHHHHHHHHHHH-------T-CEEECCCCHHHHHHTCSCTTSTTCSSBCTTTTSCHHHHHHHHH----HHTCC--HHHH
T ss_pred HHHHHHHHHHHHc-------C-CEEEEcCchhHHhcCCeeccCCCccCEeecCCCcHHHHHHHHH----HcCCC--HHHh
Confidence 9999999777644 6 5999999999999999999999999999999999999999954 46766 8899
Q ss_pred cCCCCCCcccCCCCccccccc
Q 007749 568 AAPPTAELEPIRSNYSQVHKS 588 (591)
Q Consensus 568 ~~~psaeL~p~~~~~~q~de~ 588 (591)
++||||||+| .|+||+
T Consensus 176 ~~~ps~~l~~-----~q~de~ 191 (257)
T 2e18_A 176 KKKPSAGLWE-----GQTDED 191 (257)
T ss_dssp HSCCCCCSST-----TCCHHH
T ss_pred CCCCCCCcCC-----CCcCHh
Confidence 9999999999 477775
No 24
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.75 E-value=9.8e-19 Score=196.79 Aligned_cols=209 Identities=12% Similarity=0.097 Sum_probs=141.6
Q ss_pred HHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHH
Q 007749 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (591)
.+++...+..+|++|+. .++++++||||+||+++|+|+ .+++ |+.
T Consensus 223 ~~~~~~~~i~~Ir~~v~---~~~vvv~lSGGvDSsVla~Ll-------~~al--------------G~~----------- 267 (697)
T 2vxo_A 223 VQNRELECIREIKERVG---TSKVLVLLSGGVDSTVCTALL-------NRAL--------------NQE----------- 267 (697)
T ss_dssp HHHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHH-------HHHS--------------CGG-----------
T ss_pred hhHHHHHHHHHHHHHhc---ccceEEEccCchHHHHHHHHH-------HHhc--------------CCc-----------
Confidence 35777888889999974 479999999999999999988 4553 322
Q ss_pred hhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 408 ~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
+|++++|+...++..+.+.|+++|+.+|++|.++++++.+......+..- +....+...-..+.+.++.++.+.|
T Consensus 268 ----~V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~vvdi~~~f~~~~~~l~~~-~~~~~Y~~g~~~~l~~v~~~~~kR~ 342 (697)
T 2vxo_A 268 ----QVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYNGTTTLPIS-DEDRTPRKRISKTLNMTTSPEEKRK 342 (697)
T ss_dssp ----GEEEEEEECSCCCSSTTHHHHHHHHHTTCCEEEEECHHHHHTCCCBCC-----------CBCCCGGGCCCHHHHHH
T ss_pred ----eEEEEEeccccCCcchHHHHHHHHHHhCCcEEEecchHHHHhhhhhhccc-ccccchhcccCcCcccccCHHHHHh
Confidence 59999999888777788999999999999999999987554321000000 0000000000002345556778877
Q ss_pred hcHHHHHHHHccCcccccCCCC---eEEEcCCchhhhh---------------------cccccccCCCCCCCcCCCCCc
Q 007749 488 IRMVLAFMLASLLPWVHNKPGF---YLVLGSSNVDEGL---------------------RGYLTKYDCSSADINPIGSIS 543 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~g~---~lvl~t~n~sE~~---------------------~G~~t~~gd~~~~~~Pl~~l~ 543 (591)
+|+..++.++. ..+++.|. .++|+|||..+-. .|+.+.+++....+.||.+++
T Consensus 343 iig~~~~~v~~---~~A~~~g~~~~~~~LatG~~~~D~iEs~~~~l~~g~~~iks~~nv~g~~~~~~~~~~~i~PL~~L~ 419 (697)
T 2vxo_A 343 IIGDTFVKIAN---EVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFH 419 (697)
T ss_dssp HHHHHHHHHHH---HHHHHTCCCTTSEEEECCCSSCCSBCCHHHHHHSCCCGGGSCCSSCHHHHHHHHTTCEECGGGGSC
T ss_pred HHHHHHHHHHH---HHHHHcCCCcccEEEEEeccChhhhhhhhhhhhcCccccccccccchhhHHhccCCEEEEecccCC
Confidence 77777766553 33444452 2578888764310 123344455567999999999
Q ss_pred HHHHHHHHHHHHHhcCCccccccccCCCCCC--cccCCCCccccccc
Q 007749 544 KQDLRTFLRWAATHLGYSSLAEIEAAPPTAE--LEPIRSNYSQVHKS 588 (591)
Q Consensus 544 K~~v~~l~~~~~~~~~~~i~~~i~~~~psae--L~p~~~~~~q~de~ 588 (591)
|+|||++ ++.+|+| ..+++++|||+ |++- ..|+||+
T Consensus 420 K~EVr~l----a~~lGlP--~~i~~r~Ps~gpgL~~r---~~~~de~ 457 (697)
T 2vxo_A 420 KDEVRIL----GRELGLP--EELVSRHPFPGPGLAIR---VICAEEP 457 (697)
T ss_dssp HHHHHHH----HHHTTCC--HHHHTCCCCCTTGGGGG---BCCBSSC
T ss_pred HHHHHHH----HHHcCCC--cceeeCCCCCCCccccC---ccccchh
Confidence 9999999 6668877 88999999987 7752 2366654
No 25
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.56 E-value=8.6e-15 Score=160.88 Aligned_cols=177 Identities=22% Similarity=0.235 Sum_probs=111.8
Q ss_pred HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 007749 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (591)
Q Consensus 329 ~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (591)
+++...+..+|++++. .++++++||||+||+++|+++ .+++ |.
T Consensus 211 ~~~~~~~~~~ir~~v~---~~~vvvalSGGvDSsv~a~ll-------~~a~--------------G~------------- 253 (525)
T 1gpm_A 211 AKIIDDAVARIREQVG---DDKVILGLSGGVDSSVTAMLL-------HRAI--------------GK------------- 253 (525)
T ss_dssp HHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHH-------HHHH--------------GG-------------
T ss_pred HHHHHhhhhhhhhhhc---ccceEEEecCCCCHHHHHHHH-------HHHh--------------CC-------------
Confidence 4566667778888874 379999999999999998887 3443 32
Q ss_pred hcceEEEEecCCCCCCHhhHHHHHH-HHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 409 AKRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 409 ~~~~v~~v~m~~~~ss~~t~~~A~~-la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
++++++|+....+..+.+.|.+ +|+.+|++|+++++++.+ .+.+..+ .+| +. ..-+..+
T Consensus 254 ---~v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~f---~~~l~~~--~~p----------e~--~~~~~~~ 313 (525)
T 1gpm_A 254 ---NLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRF---LSALAGE--NDP----------EA--KRKIIGR 313 (525)
T ss_dssp ---GEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHHH---HHHHTTC--CCH----------HH--HHHHHHH
T ss_pred ---CEEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHHH---HHhhcCC--CCh----------HH--hhhhhhH
Confidence 4899999987776677788866 899999999999998643 3333321 011 10 0111112
Q ss_pred hcHHHHHHHHccCcccccCC-C-CeEEEcC--Cchhhh---------------hcccccccCCCCCCCcCCCCCcHHHHH
Q 007749 488 IRMVLAFMLASLLPWVHNKP-G-FYLVLGS--SNVDEG---------------LRGYLTKYDCSSADINPIGSISKQDLR 548 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~-g-~~lvl~t--~n~sE~---------------~~G~~t~~gd~~~~~~Pl~~l~K~~v~ 548 (591)
.|...++.+| ++. | ..++.|| +|..|. .+|+.+...+ ...+.||.+++|+|||
T Consensus 314 ~~~~~l~~~A-------~~~~g~~~l~~Gt~~~D~~E~~~~~~~~s~~iks~~~l~gl~~~~~-~~~i~PL~~l~K~EVr 385 (525)
T 1gpm_A 314 VFVEVFDEEA-------LKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMK-MGLVEPLKELFKDEVR 385 (525)
T ss_dssp HHHHHHHHHH-------HHSSSEEEEECCCCHHHHHHTTC----------------------C-CEEECTTTTCCHHHHH
T ss_pred HHHHHHHHHH-------HhcCCCCEEEeCCCCcchhhhcCccccccccccccccccccccccC-CcEEehhhcCCHHHHH
Confidence 2333344333 333 3 1367777 222333 3334333332 3689999999999999
Q ss_pred HHHHHHHHhcCCccccccccCCCC--CCcc
Q 007749 549 TFLRWAATHLGYSSLAEIEAAPPT--AELE 576 (591)
Q Consensus 549 ~l~~~~~~~~~~~i~~~i~~~~ps--aeL~ 576 (591)
++ ++++|+| ..++.++|+ |||.
T Consensus 386 ~l----a~~lglp--~~i~~~~P~~~p~La 409 (525)
T 1gpm_A 386 KI----GLELGLP--YDMLYRHPFPGPGLG 409 (525)
T ss_dssp HH----HHHTTCC--HHHHTSCCCCTTGGG
T ss_pred HH----HHHcCCC--HHhcccCCCCchhhc
Confidence 99 7778877 776666665 6684
No 26
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=99.53 E-value=1.6e-14 Score=152.02 Aligned_cols=169 Identities=19% Similarity=0.242 Sum_probs=113.1
Q ss_pred HHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC
Q 007749 343 LRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN 422 (591)
Q Consensus 343 l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ 422 (591)
|++...++++|++|||+||+++|+++. + .|. .|++++|....
T Consensus 4 ~~~~~~~kVlVa~SGGvDSsv~a~lL~-------~---------------~G~----------------~V~~v~~~~~~ 45 (376)
T 2hma_A 4 MSDNSKTRVVVGMSGGVDSSVTALLLK-------E---------------QGY----------------DVIGIFMKNWD 45 (376)
T ss_dssp -CCGGGSEEEEECCSSHHHHHHHHHHH-------H---------------TTC----------------EEEEEEEECCC
T ss_pred hhhCCCCeEEEEEeCHHHHHHHHHHHH-------H---------------cCC----------------cEEEEEEECCC
Confidence 444555799999999999999888872 2 232 58999997542
Q ss_pred --------CCHhhHHHHHHHHHHhCCceEEEecHHHHHH-----HHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhc
Q 007749 423 --------SSQETRMLAKKLADEIGSWHLDVSIDTVVSA-----FLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIR 489 (591)
Q Consensus 423 --------ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R 489 (591)
++..+.++|+++|+.||++|+++++++.+.. +++.+. .|.+| ..+..+|...|.+
T Consensus 46 ~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~--~G~tp----------npc~~C~r~ik~~ 113 (376)
T 2hma_A 46 DTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYR--AGRTP----------NPDVMCNKEIKFK 113 (376)
T ss_dssp CCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHH--TTCCC----------CHHHHHHHHTTTT
T ss_pred cccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHHHHHHHHHHHHHHh--cCCCC----------ChHHHHHHHHHHH
Confidence 2457889999999999999999999875522 222222 24555 2345566543333
Q ss_pred HHHHHHHHccCcccccCCCCeEEEcCCchhhhh---cc-------ccc-------ccC----CCCCCCcCCCCCcHHHHH
Q 007749 490 MVLAFMLASLLPWVHNKPGFYLVLGSSNVDEGL---RG-------YLT-------KYD----CSSADINPIGSISKQDLR 548 (591)
Q Consensus 490 ~~~l~~~a~~~~~~~~~~g~~lvl~t~n~sE~~---~G-------~~t-------~~g----d~~~~~~Pl~~l~K~~v~ 548 (591)
.++.+|. +.|. -++.|||..... .+ ... +++ .....+.||++++|.+|+
T Consensus 114 --~l~~~A~-------~~G~-d~IatGH~a~d~~~~~~~~~l~rg~d~~kdqsyfL~~l~~~~l~~~i~PL~~~~K~eVr 183 (376)
T 2hma_A 114 --AFLDYAI-------TLGA-DYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 183 (376)
T ss_dssp --HHHHHHH-------TTTC-SEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGTTCCHHHHTTEECTTTTCCHHHHH
T ss_pred --HHHHHHH-------hCCC-CEEEECcchhhhhCCCchhhhhhccccccccchhccCCChhhcCcEEecCcCCCHHHHH
Confidence 3444443 3353 567777743221 11 110 011 114579999999999999
Q ss_pred HHHHHHHHhcCCccccccccCCCCCCcccCC
Q 007749 549 TFLRWAATHLGYSSLAEIEAAPPTAELEPIR 579 (591)
Q Consensus 549 ~l~~~~~~~~~~~i~~~i~~~~psaeL~p~~ 579 (591)
++ ++++|++ ++++|+|+++|.++
T Consensus 184 ~~----A~~~gl~----~~~k~~s~~~cf~~ 206 (376)
T 2hma_A 184 RL----AEEAGLS----TAKKKDSTGICFIG 206 (376)
T ss_dssp HH----HHHTTCT----TTTCCCCCSCTTTT
T ss_pred HH----HHHcCCC----cccCCCCCCccccC
Confidence 99 7788998 78999999998765
No 27
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.45 E-value=3.1e-13 Score=138.53 Aligned_cols=178 Identities=22% Similarity=0.247 Sum_probs=108.8
Q ss_pred HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 007749 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (591)
Q Consensus 329 ~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (591)
+.+......+|++++. .+++++++|||+||+++|.++ .+++ |.
T Consensus 4 ~~~~~~~~~~ir~~v~---~~kvlvalSGGvDSsvla~ll-------~~~~--------------g~------------- 46 (308)
T 2dpl_A 4 GRFVEEKVREIRETVG---DSKAIIALSGGVDSSTAAVLA-------HKAI--------------GD------------- 46 (308)
T ss_dssp HHHHHHHHHHHHHHHT---TSCEEEECCSSHHHHHHHHHH-------HHHH--------------GG-------------
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEEeChHHHHHHHHHH-------HHhh--------------CC-------------
Confidence 4556667788888875 378999999999999998887 2332 32
Q ss_pred hcceEEEEecCCCCCCHhhHHHHHH-HHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh
Q 007749 409 AKRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR 487 (591)
Q Consensus 409 ~~~~v~~v~m~~~~ss~~t~~~A~~-la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR 487 (591)
.+++++++.......+.+.+++ +|+.+|++|+++++++.+ .+.+... ..| -..+++..|
T Consensus 47 ---~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~f---~~~l~~~--~~p------------e~~~~~~~~ 106 (308)
T 2dpl_A 47 ---RLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYVDAQDRF---FSALKGV--TDP------------EEKRKIIGR 106 (308)
T ss_dssp ---GEEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEEECHHHH---HHHTTTC--CCH------------HHHHHHHHH
T ss_pred ---CEEEEEEcCCCCChHHHHHHHHHHHHHcCCcEEEEECCHHH---HHhhhCC--CCH------------HHHHHHHHH
Confidence 4889999876655556677777 667899999999997642 2222211 011 112344455
Q ss_pred hcHHHHHHHHccCcccccCCCC-eEEEcCC--chhhhhccccccc---C----CCCCCCcCCCCCcHHHHHHHHHHHHHh
Q 007749 488 IRMVLAFMLASLLPWVHNKPGF-YLVLGSS--NVDEGLRGYLTKY---D----CSSADINPIGSISKQDLRTFLRWAATH 557 (591)
Q Consensus 488 ~R~~~l~~~a~~~~~~~~~~g~-~lvl~t~--n~sE~~~G~~t~~---g----d~~~~~~Pl~~l~K~~v~~l~~~~~~~ 557 (591)
.|...++.+|.. .|. .++.|+. |..|...|..+.. | .....+.||.+++|+||+++ ++.
T Consensus 107 ~~~~~l~~~A~~-------~g~~~la~Gh~~dD~~Et~~~iks~~~~~~l~~~~~~~virPL~~l~K~EI~~~----a~~ 175 (308)
T 2dpl_A 107 VFIEVFEEVAKK-------IGAEYLIQGTIAPDWIESQGKIKSHHNVGGLPEKLNLKLIEPLRDLYKDEVREL----AKF 175 (308)
T ss_dssp HHHHHHHHHHHH-------HTCSEEECCCCCC---------------------CCCEEECTTTTCCHHHHHHH----HHH
T ss_pred HHHHHHHHHHHH-------cCcCEEEECCCCccchhhccchhhhhccccCCccCCCeEEEEcccCCHHHHHHH----HHH
Confidence 565566655542 232 3555542 2234332333221 1 12468999999999999999 777
Q ss_pred cCCccccccccCCC--CCCcc
Q 007749 558 LGYSSLAEIEAAPP--TAELE 576 (591)
Q Consensus 558 ~~~~i~~~i~~~~p--saeL~ 576 (591)
+|+| ..+..+.| .|||.
T Consensus 176 ~glp--~~i~~~~P~~~~~La 194 (308)
T 2dpl_A 176 LGLP--EKIYNRMPFPGPGLA 194 (308)
T ss_dssp TTCC--HHHHTCCCCCTTGGG
T ss_pred hCCC--ceeeecCCCCccccc
Confidence 8877 44444444 55664
No 28
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.42 E-value=3.2e-13 Score=142.06 Aligned_cols=165 Identities=21% Similarity=0.271 Sum_probs=98.7
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCC-----
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN----- 422 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~----- 422 (591)
.++++|++|||+||+++|+++. + .|. .|++++|....
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~-------~---------------~G~----------------~V~~v~~~~~~~~~~~ 58 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQ-------Q---------------QGY----------------QVEGLFMKNWEEDDGE 58 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHH-------T---------------TCC----------------EEEEEEEECCCCCSHH
T ss_pred CCEEEEEEEChHHHHHHHHHHH-------H---------------cCC----------------eEEEEEEEcCcccccc
Confidence 3689999999999999888872 1 232 58999997432
Q ss_pred ---CCHhhHHHHHHHHHHhCCceEEEecHHHHH-----HHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHH
Q 007749 423 ---SSQETRMLAKKLADEIGSWHLDVSIDTVVS-----AFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAF 494 (591)
Q Consensus 423 ---ss~~t~~~A~~la~~lG~~~~~i~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~ 494 (591)
++..+.++|+++|+.||++|+++++++.+. .+++.+. .|.+| ..+..+|...|.+. ++
T Consensus 59 ~~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~--~G~tp----------npc~~Cnr~ik~~~--l~ 124 (380)
T 2der_A 59 EYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYK--AGRTP----------NPDILCNKEIKFKA--FL 124 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHH--TTCCC----------CHHHHHHHHTTTTH--HH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHH--cCCCC----------ChhHHHHHHHHHHH--HH
Confidence 245778999999999999999999986552 2222222 24444 24556676544443 44
Q ss_pred HHHccCcccccCCCCeEEEcCCchhh---------hhccccc-------ccC----CCCCCCcCCCCCcHHHHHHHHHHH
Q 007749 495 MLASLLPWVHNKPGFYLVLGSSNVDE---------GLRGYLT-------KYD----CSSADINPIGSISKQDLRTFLRWA 554 (591)
Q Consensus 495 ~~a~~~~~~~~~~g~~lvl~t~n~sE---------~~~G~~t-------~~g----d~~~~~~Pl~~l~K~~v~~l~~~~ 554 (591)
.+|.. +.|. -.|.||+... +..|... +++ +....+.||++++|.+|+++
T Consensus 125 ~~A~~------~~Ga-d~IatGH~a~d~~~~~~~~l~rg~~~~kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~---- 193 (380)
T 2der_A 125 EFAAE------DLGA-DYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKI---- 193 (380)
T ss_dssp HHHHH------TTCC-SEEECCCSCEEEEETTEEEEECCSSTTTCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHH----
T ss_pred HHHHh------hcCC-CEEEEccccccccccchHHHhcccccccccceeecCCChhhcceeEccCCCCCHHHHHHH----
Confidence 33432 1353 4566766422 2223211 111 11357999999999999999
Q ss_pred HHhcCCccccccccCCCCCCcccCC
Q 007749 555 ATHLGYSSLAEIEAAPPTAELEPIR 579 (591)
Q Consensus 555 ~~~~~~~i~~~i~~~~psaeL~p~~ 579 (591)
++++|++ ++++|+|+++|.++
T Consensus 194 A~~~Gl~----~~~kp~s~~~cf~~ 214 (380)
T 2der_A 194 AEDLGLV----TAKKKDSTGICFIG 214 (380)
T ss_dssp HHHTTCC------------------
T ss_pred HHHcCCC----CccCCCCCCccccC
Confidence 7888998 78899999988754
No 29
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.40 E-value=1.2e-12 Score=144.46 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=101.8
Q ss_pred HHHHHhC-CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecC
Q 007749 341 DYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG 419 (591)
Q Consensus 341 d~l~~~~-~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~ 419 (591)
+++++.| .++++++||||+||+++|+|+ .+++ |. ++++++|+
T Consensus 247 ~~ir~~g~~~~vvvalSGGvDSsv~a~ll-------~~~~--------------G~----------------~v~~v~vd 289 (556)
T 3uow_A 247 KNIEKYKHDHYVIAAMSGGIDSTVAAAYT-------HKIF--------------KE----------------RFFGIFID 289 (556)
T ss_dssp HHHGGGTTTCEEEEECCSSHHHHHHHHHH-------HHHH--------------GG----------------GEEEEEEE
T ss_pred eeeeecCCCceEEEEcccCCCHHHHHHHH-------HHHh--------------CC----------------eEEEEEEe
Confidence 3444446 689999999999999999888 3553 42 48999999
Q ss_pred CCCCCHhhHHHH-HHHHHHh-CCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHH
Q 007749 420 SENSSQETRMLA-KKLADEI-GSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLA 497 (591)
Q Consensus 420 ~~~ss~~t~~~A-~~la~~l-G~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a 497 (591)
+......+.+.+ +.+|+.+ |++|+++|+++.+.. .+..+. +.-...++..+.+.-++..+|
T Consensus 290 ~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f~~---~l~g~~--------------~pe~kr~iig~~f~~vf~~~A 352 (556)
T 3uow_A 290 NGLLRKNEAENVYTFLKSTFPDMNITKIDASENFLS---NLQGVT--------------DPEQKRKIIGKLFIEEFEKAV 352 (556)
T ss_dssp CSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHHHH---HTTTCC--------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHHHH---hhcCCC--------------ChHHHHHHHHHHHHHHHHHHH
Confidence 876665566666 6699999 999999999865432 233210 001111222222333333333
Q ss_pred ccCcccccCCCC-----eEEEcCCchh---hhhc--c----ccccc---C----CCCCCCcCCCCCcHHHHHHHHHHHHH
Q 007749 498 SLLPWVHNKPGF-----YLVLGSSNVD---EGLR--G----YLTKY---D----CSSADINPIGSISKQDLRTFLRWAAT 556 (591)
Q Consensus 498 ~~~~~~~~~~g~-----~lvl~t~n~s---E~~~--G----~~t~~---g----d~~~~~~Pl~~l~K~~v~~l~~~~~~ 556 (591)
. +.|+ .++.|| |++ |... | ..+.+ | .....+.||.+++|+|||++ ++
T Consensus 353 ~-------~~~~~~~~~~la~Gt-~y~D~ies~~~~g~~~~iks~~n~~gl~~~~~~~li~PL~~l~K~EVr~l----a~ 420 (556)
T 3uow_A 353 N-------NIDIDINKTFLLQGT-LYPDIIESKCSKNLSDTIKTHHNVGGLPKNLKFKLFEPFKYLFKDDVKTL----SR 420 (556)
T ss_dssp H-------TTCCCGGGEEEECCC-CHHHHHHHSCC-------------------CCCEEECTTTTCCHHHHHHH----HH
T ss_pred H-------HcCCcccccccccCc-cChHHHhhcccccccceecccccccccccccccceEeecccCcHHHHHHH----HH
Confidence 3 3332 244443 233 3332 1 01111 1 12347889999999999999 88
Q ss_pred hcCCccccccccC-C-CCCCcc
Q 007749 557 HLGYSSLAEIEAA-P-PTAELE 576 (591)
Q Consensus 557 ~~~~~i~~~i~~~-~-psaeL~ 576 (591)
++|+| .+++.+ | |.|||.
T Consensus 421 ~lGlp--~~~~~r~P~p~p~la 440 (556)
T 3uow_A 421 ELNLP--EEITNRHPFPGPGLA 440 (556)
T ss_dssp TTTCC--HHHHHCCCCCTTTTT
T ss_pred HcCCC--HHHhCCCCCCCCCcc
Confidence 89987 555544 4 466874
No 30
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.39 E-value=3.8e-12 Score=139.18 Aligned_cols=176 Identities=22% Similarity=0.213 Sum_probs=112.3
Q ss_pred HHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHh
Q 007749 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (591)
Q Consensus 329 ~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (591)
+.+......+|++++ +.++++|++|||+||+++|.++. ++ | .
T Consensus 193 ~~~~~~~i~~ir~~~---~~~kvvvalSGGvDSsvla~ll~-------~~---------------g-~------------ 234 (503)
T 2ywb_A 193 EHVLEELLREVRERA---GKDRVLLAVSGGVDSSTLALLLA-------KA---------------G-V------------ 234 (503)
T ss_dssp HHHHHHHHHHHHHHH---TTSEEEEEECSSHHHHHHHHHHH-------HH---------------T-C------------
T ss_pred hhhhHHHHHhhhhhc---cCccEEEEecCCcchHHHHHHHH-------Hc---------------C-C------------
Confidence 455556667788876 34799999999999999988872 32 2 1
Q ss_pred hcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhh
Q 007749 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (591)
Q Consensus 409 ~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~ 488 (591)
.++++++++...++.+.+.++++|+.+|++++++++++.+ .+.+.. .. +.+ ....+..+.
T Consensus 235 ---~v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~~~~~f---~~~l~g---~~---------~pe--~~r~~~~~~ 294 (503)
T 2ywb_A 235 ---DHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERF---LKALKG---VE---------DPE--EKRKIIGRE 294 (503)
T ss_dssp ---EEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHHHH---HHHHTT---CC---------CHH--HHHHHHHHH
T ss_pred ---eEEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEECcHHH---HHhhcC---CC---------ChH--HHhhhhhHH
Confidence 5899999987767788899999999999999999998643 222221 10 001 111222233
Q ss_pred cHHHHHHHHccCcccccCC-C-CeEEEcCC--chhhhhc-c------------cccccCCCCCCCcCCCCCcHHHHHHHH
Q 007749 489 RMVLAFMLASLLPWVHNKP-G-FYLVLGSS--NVDEGLR-G------------YLTKYDCSSADINPIGSISKQDLRTFL 551 (591)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~-g-~~lvl~t~--n~sE~~~-G------------~~t~~gd~~~~~~Pl~~l~K~~v~~l~ 551 (591)
|...++..|. +. | ..++.||. |..|... | +.+.. .....+.||.+++|+||+++
T Consensus 295 ~~~~l~~~A~-------~~~g~~~la~G~~~~D~~Et~~~g~~~~iks~~~l~~l~~~-~~~~ii~PL~~l~K~EVr~~- 365 (503)
T 2ywb_A 295 FVAAFSQVAR-------ERGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPED-LEFELLEPFRLLFKDEVREL- 365 (503)
T ss_dssp HHHHHHHHHH-------HHCCCSEEECCCCHHHHHC-----------------CCCSS-CCCEEECTTTTCCHHHHHHH-
T ss_pred HHHHHHHHHH-------hcCCCCEEEECCcCccchhhccCCccccccccccccccccc-ccCceEehhhcCCHHHHHHH-
Confidence 3334444442 22 2 24777774 4445422 2 12211 12358999999999999999
Q ss_pred HHHHHhcCCcccccccc-CC-CCCCcc
Q 007749 552 RWAATHLGYSSLAEIEA-AP-PTAELE 576 (591)
Q Consensus 552 ~~~~~~~~~~i~~~i~~-~~-psaeL~ 576 (591)
++++|+| ..++. +| |++||.
T Consensus 366 ---a~~~glp--~~i~~~~P~~~~~La 387 (503)
T 2ywb_A 366 ---ALLLGLP--DTLRLRHPFPGPGLA 387 (503)
T ss_dssp ---HHHTTCC--HHHHSCCCCCTTGGG
T ss_pred ---HHHcCCC--hhheecCCCCCcchh
Confidence 7778877 55544 44 556784
No 31
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.34 E-value=3e-12 Score=140.59 Aligned_cols=176 Identities=19% Similarity=0.197 Sum_probs=109.9
Q ss_pred HHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhh
Q 007749 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (591)
Q Consensus 330 e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (591)
.+.......+++++ +.++++|+||||+||+++|.++ .+++ |.
T Consensus 215 ~~~~~~i~~i~~~v---~~~kvlvalSGGvDSsvla~ll-------~~~~--------------G~-------------- 256 (527)
T 3tqi_A 215 HIIEDSIRDIQEKV---GKEQVIVGLSGGVDSAVTATLV-------HKAI--------------GD-------------- 256 (527)
T ss_dssp HHHHHHHHHHHHHH---TTSCEEEECTTTHHHHHHHHHH-------HHHH--------------GG--------------
T ss_pred HHHHHHHHHHHHhc---CCCeEEEEEecCcCHHHHHHHH-------HHHh--------------CC--------------
Confidence 34444445566655 3489999999999999998887 3442 32
Q ss_pred cceEEEEecCCCCCCHhhHHHHHH-HHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhh
Q 007749 410 KRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARI 488 (591)
Q Consensus 410 ~~~v~~v~m~~~~ss~~t~~~A~~-la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~ 488 (591)
.++++++.....+..+.+.+.+ +|+.+|++|+++++++.+.. .+. +. + ..-...++..|.
T Consensus 257 --~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~~~~---~l~---g~---------~--~~~~~r~~~~~~ 317 (527)
T 3tqi_A 257 --QLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRFMK---ALK---GI---------S--DPEEKRKIAGEQ 317 (527)
T ss_dssp --GEEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHHHHS---SSS---SC---------C--CHHHHHHHHHHH
T ss_pred --eEEEEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHHHHH---hhc---CC---------C--ChhhhhhhhHHH
Confidence 4899999876666566666665 99999999999999764321 111 10 0 111234555555
Q ss_pred cHHHHHHHHccCcccccCCCCeEEEcCCc-hhhhh------cccc-ccc------C----CCCCCCcCCCCCcHHHHHHH
Q 007749 489 RMVLAFMLASLLPWVHNKPGFYLVLGSSN-VDEGL------RGYL-TKY------D----CSSADINPIGSISKQDLRTF 550 (591)
Q Consensus 489 R~~~l~~~a~~~~~~~~~~g~~lvl~t~n-~sE~~------~G~~-t~~------g----d~~~~~~Pl~~l~K~~v~~l 550 (591)
|.-.+. .++++.|. -+|.||+ +++.+ .|.. +.. | .....+.||.+++|+|||++
T Consensus 318 ~~~~~~-------~~A~~~g~-~~la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~gl~~~~~~~iirPL~~l~K~EIr~~ 389 (527)
T 3tqi_A 318 FIRVFE-------EQAKKLNV-KWLGQGTIYPDVIESAKTKTGKGHIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKL 389 (527)
T ss_dssp HHHHHH-------HTTTTTTC-CEEECCCCHHHHHCC--------------------------CEECTTTTCCHHHHHHH
T ss_pred HHHHHH-------HHHHHcCC-CEEEccccCCccccccccCCChhheeeeecccccCcccccCccccchhcCCHHHHHHH
Confidence 544444 34445563 3444444 55433 1210 111 1 12247889999999999999
Q ss_pred HHHHHHhcCCccccc-cccCC-CCCCcc
Q 007749 551 LRWAATHLGYSSLAE-IEAAP-PTAELE 576 (591)
Q Consensus 551 ~~~~~~~~~~~i~~~-i~~~~-psaeL~ 576 (591)
++++|+| .. ++.+| |.+||.
T Consensus 390 ----a~~lGlp--~~~v~~~P~p~~~l~ 411 (527)
T 3tqi_A 390 ----GLELGLP--ADLIYRHPFPGPGLA 411 (527)
T ss_dssp ----HHHHTCC--HHHHTCCCCCTTGGG
T ss_pred ----HHHcCCC--hhhhccCCCCCCCcc
Confidence 7778987 33 37888 889984
No 32
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=99.31 E-value=1.9e-12 Score=125.97 Aligned_cols=164 Identities=16% Similarity=0.091 Sum_probs=96.3
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhh
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t 427 (591)
.++++|++|||+||++++.++. +. +. .++++++.....+..+
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~-------~~---------------~~----------------~v~~~~~~~~~~~~~e 44 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWAL-------KE---------------FE----------------EVETVTFHYNQRHSQE 44 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHH-------HH---------------CS----------------EEEEEEEESSCTTCHH
T ss_pred CCCEEEEccCcHHHHHHHHHHH-------Hc---------------CC----------------ceEEEEEeCCCCCHHH
Confidence 3689999999999999888762 21 21 4888998866555577
Q ss_pred HHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh---hcH----HHHHHHHccC
Q 007749 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR---IRM----VLAFMLASLL 500 (591)
Q Consensus 428 ~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR---~R~----~~l~~~a~~~ 500 (591)
.+.|+++|+.+|++|++++++++.+...+.+.+ +... ......|.+.+ .|. .+++.+|.
T Consensus 45 ~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~l~~-----~~~~-------~~~~~~~~~~~~~~~r~~~~~~~~~~~a~-- 110 (219)
T 3bl5_A 45 VEVAKSIAEKLGVKNHLLDMSLLNQLAPNALTR-----NDIE-------IEVKDGELPSTFVPGRNLVFLSFASILAY-- 110 (219)
T ss_dssp HHHHHHHHHTTCCCEEEEECGGGGGGSTGGGC--------------------------CCCCTTHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCeEEEeChHHhhhccccccc-----cccc-------ccccccCCCCceeechHHHHHHHHHHHHH--
Confidence 889999999999999999997632110000000 0000 00001122211 222 23333333
Q ss_pred cccccCCCCeEEEcCCchhhhhccccc--------ccC-------CCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccc
Q 007749 501 PWVHNKPGFYLVLGSSNVDEGLRGYLT--------KYD-------CSSADINPIGSISKQDLRTFLRWAATHLGYSSLAE 565 (591)
Q Consensus 501 ~~~~~~~g~~lvl~t~n~sE~~~G~~t--------~~g-------d~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~ 565 (591)
+.|. -++.||+..+-..||.+ +.+ .....+.||.+++|.||+++ ++++|+| ..
T Consensus 111 -----~~g~-~~i~tG~~~dd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ii~PL~~~~K~ei~~~----a~~~glp--~~ 178 (219)
T 3bl5_A 111 -----QIGA-RHIITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWKL----ADELGAL--DF 178 (219)
T ss_dssp -----HHTC-SEEECCCCC----CCGGGSHHHHHHHHHHHHHHHTSCCEEECTTTTCCHHHHHHH----HHHTTCH--HH
T ss_pred -----HcCC-CEEEEeccccccCCCCCCCHHHHHHHHHHHHhccCCCeEEEeccccCCHHHHHHH----HHHcCCC--cc
Confidence 3353 45566665443455533 111 23456999999999999999 7778875 55
Q ss_pred cccCCCCCCc
Q 007749 566 IEAAPPTAEL 575 (591)
Q Consensus 566 i~~~~psaeL 575 (591)
+++.+||..+
T Consensus 179 ~~~~t~sc~~ 188 (219)
T 3bl5_A 179 VKNNTLTCYN 188 (219)
T ss_dssp HHHHCCCSTT
T ss_pred chhheeeccC
Confidence 6788888644
No 33
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=99.28 E-value=6.8e-12 Score=123.42 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=92.3
Q ss_pred CCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHh
Q 007749 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (591)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~ 426 (591)
|+++++|++|||+||++++.++. +. +. .|+++++.....+..
T Consensus 1 ~~~kvvv~lSGG~DS~~~l~ll~-------~~---------------~~----------------~v~av~~~~g~~~~~ 42 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQAL-------QD---------------YD----------------DVHCITFDYGQRHRA 42 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHH-------HH---------------CS----------------EEEEEEEESSSSCHH
T ss_pred CCCCEEEEecCcHHHHHHHHHHH-------Hc---------------CC----------------CEEEEEEECCCCCHH
Confidence 46789999999999999888762 22 21 488999987655667
Q ss_pred hHHHHHHHHHHhCCc-eEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhh---hhhhcHHHHHHHHccCcc
Q 007749 427 TRMLAKKLADEIGSW-HLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNI---QARIRMVLAFMLASLLPW 502 (591)
Q Consensus 427 t~~~A~~la~~lG~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~---qaR~R~~~l~~~a~~~~~ 502 (591)
+.+.|+++|+.+|++ |++++++.+.+-..+.+.+.....|. .....+|. ..+.|..+...+|. .
T Consensus 43 e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~~~l~~~~~~v~~---------~~~~~~~~~~~~~~~R~~~~~~la~---~ 110 (232)
T 2pg3_A 43 EIEVAQELSQKLGAAAHKVLDVGLLNELATSSLTRDSIPVPD---------YDANAQGIPNTFVPGRNILFLTLAS---I 110 (232)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTHHHHTSHHHHHHTTCCCCC------------------CCCCTTHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHhCCCceEEEeChhHHHHhhhhcccccccccc---------cccccCCCCCCeEechHHHHHHHHH---H
Confidence 889999999999999 99999974322111222211000110 00111222 23455544322221 2
Q ss_pred cccCCCCeEEEcCCchhhhhccccc-------------ccC--CCCCCCcCCCCCcHHHHHHHHHHHHHhcCC-cc
Q 007749 503 VHNKPGFYLVLGSSNVDEGLRGYLT-------------KYD--CSSADINPIGSISKQDLRTFLRWAATHLGY-SS 562 (591)
Q Consensus 503 ~~~~~g~~lvl~t~n~sE~~~G~~t-------------~~g--d~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~-~i 562 (591)
++++.|. -+|.||+..+-..||.+ .++ .....+.||.+++|.||+++ ++++|+ |+
T Consensus 111 ~A~~~g~-~~I~~G~~~~D~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~PL~~~~K~ei~~~----a~~~gl~~~ 181 (232)
T 2pg3_A 111 YAYQVGA-EAVITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPLMWLNKAETWAL----ADYYQQLDT 181 (232)
T ss_dssp HHHHHTC-SEEECCCCSCSSSCCGGGSHHHHHHHHHHHHHHHTSCCEEECTTTTCCHHHHHHH----HHHTTCHHH
T ss_pred HHHHcCc-CEEEEccCccccCCCCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHH----HHHcCCCcc
Confidence 2223342 23444443222223322 111 13457899999999999999 777887 63
No 34
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=99.22 E-value=2.4e-11 Score=129.46 Aligned_cols=157 Identities=20% Similarity=0.191 Sum_probs=98.3
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCC-CCCHhh
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQET 427 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~-~ss~~t 427 (591)
+++++++|||+||++++.++. + .|. .++++++... +.++.+
T Consensus 188 ~kvlvalSGGvDS~vll~ll~-------~---------------~G~----------------~v~av~v~~~~~~~~~~ 229 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLTM-------K---------------RGV----------------SVEAVHFHSPPFTSERA 229 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHHH-------H---------------BTE----------------EEEEEEEECTTTSCHHH
T ss_pred CeEEEEeCCCChHHHHHHHHH-------H---------------cCC----------------cEEEEEEeCCCCCCHHH
Confidence 579999999999999887762 1 232 4889888764 566788
Q ss_pred HHHHHHHHHHh-----CCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh-hcHHHHHHHHccCc
Q 007749 428 RMLAKKLADEI-----GSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR-IRMVLAFMLASLLP 501 (591)
Q Consensus 428 ~~~A~~la~~l-----G~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR-~R~~~l~~~a~~~~ 501 (591)
.+.++++|+.+ |++++++++++...++. ... + . .+.++.+| .++..++.+|.
T Consensus 230 ~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~~i~---~~~----~----------~--~~~c~~~Rr~~~~~~~~~A~--- 287 (413)
T 2c5s_A 230 KQKVIDLAQELTKYCKRVTLHLVPFTEVQKTIN---KEI----P----------S--SYSMTVMRRMMMRITERIAE--- 287 (413)
T ss_dssp HHHHHHHHHHHGGGSSCEEEEEEECHHHHHHHH---HHS----C----------G--GGHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHH---hcC----C----------c--ccHHHHHHHHHHHHHHHHHH---
Confidence 88999999999 99999999987654322 110 1 1 01122222 22223343343
Q ss_pred ccccCCCC-eEEEcCC--ch-hhhhcccccc-cCCCCCCCcCCCCCcHHHHHHHHHHHHHhcCCccccccccCCCCCCcc
Q 007749 502 WVHNKPGF-YLVLGSS--NV-DEGLRGYLTK-YDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELE 576 (591)
Q Consensus 502 ~~~~~~g~-~lvl~t~--n~-sE~~~G~~t~-~gd~~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~i~~~i~~~~psaeL~ 576 (591)
+.|. .++.|+. +. ++...|+.+. .+.....+.||.+++|.||+++ ++++|++ .++.+|+++-|
T Consensus 288 ----~~g~~~I~tG~~~dD~ae~~l~~l~~~~~~~~~~virPL~~l~K~eI~~~----a~~~Gl~----~~~~~p~~~~c 355 (413)
T 2c5s_A 288 ----ERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIRPLITMDKLEIIKI----AEEIGTY----DISIRPYEDCC 355 (413)
T ss_dssp ----HTTCCEEECCCCSSSTTSCCHHHHHHHGGGCCSCEECTTTTCCHHHHHHH----HHHTTCH----HHHTSCC----
T ss_pred ----HcCCCEEEEcccchhhHHHHHHHHhcccccCCCEEEeccCCCCHHHHHHH----HHHcCCC----ccccCCCCCCC
Confidence 3352 2455542 12 2233455443 2345678999999999999999 7778876 55656766444
Q ss_pred c
Q 007749 577 P 577 (591)
Q Consensus 577 p 577 (591)
|
T Consensus 356 ~ 356 (413)
T 2c5s_A 356 T 356 (413)
T ss_dssp -
T ss_pred e
Confidence 3
No 35
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=99.03 E-value=6e-10 Score=117.26 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=51.8
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++|++|||+|||++|+++. + .|. .|+|++|..... .+.
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lk-------e---------------~G~----------------eViavt~d~Gq~--~El 54 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLC-------E---------------KGF----------------DVIAYVANVGQK--DDF 54 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHH-------H---------------TTC----------------EEEEEEEESSCC--CCH
T ss_pred CCEEEEeCCcHHHHHHHHHHH-------H---------------CCC----------------eEEEEEEEcCCH--HHH
Confidence 679999999999999888762 2 243 489999986542 678
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHH
Q 007749 429 MLAKKLADEIGS-WHLDVSIDTVV 451 (591)
Q Consensus 429 ~~A~~la~~lG~-~~~~i~i~~~~ 451 (591)
++|+++|+.+|+ +|+++|+.+.+
T Consensus 55 e~A~~vA~~lGi~~~~VvDl~eef 78 (421)
T 1vl2_A 55 VAIKEKALKTGASKVYVEDLRREF 78 (421)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHcCCceEEEEecHHHH
Confidence 999999999999 99999997644
No 36
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=99.01 E-value=8e-10 Score=116.76 Aligned_cols=151 Identities=14% Similarity=0.075 Sum_probs=93.7
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++|++|||+||++++.++ .++ .+. .|++++++... ..+.
T Consensus 1 ~kVvva~SGG~DSsvll~ll-------~~~--------------~g~----------------~V~av~vd~g~--~~e~ 41 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWL-------KET--------------YRA----------------EVIAFTADIGQ--GEEV 41 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH--------------HTC----------------EEEEEEEESSC--SSCH
T ss_pred CcEEEEEeChHHHHHHHHHH-------HHh--------------hCC----------------cEEEEEEeCCC--HHHH
Confidence 47999999999999988776 232 232 48899998655 5678
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHHHH-H-HHHhhhhhCCCCCcccCCCCCCCchhhhhhhhh-hcHHHHHHHHccCcccc
Q 007749 429 MLAKKLADEIGS-WHLDVSIDTVVSA-F-LSLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR-IRMVLAFMLASLLPWVH 504 (591)
Q Consensus 429 ~~A~~la~~lG~-~~~~i~i~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR-~R~~~l~~~a~~~~~~~ 504 (591)
+.++++|+.+|+ +++++++++.+.. + ...+.. +..+. .+ ...+...+| +|...+..+|
T Consensus 42 e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~--~~~~e--------~~-y~~g~~~~R~~~~~~L~~~A------- 103 (400)
T 1kor_A 42 EEAREKALRTGASKAIALDLKEEFVRDFVFPMMRA--GAVYE--------GY-YLLGTSIARPLIAKHLVRIA------- 103 (400)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHT--TCCBT--------TT-BCCTTTTHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhCCCeEEEEeCcHHHHHHhhHHHHHc--CCccc--------cc-cccCCccchHHHHHHHHHHH-------
Confidence 999999999999 7999999854421 1 122221 11110 00 111122222 3333444333
Q ss_pred cCCCCeEEEcCCc------hhhhhcccccccCCCCCCCcCCCCC---cHHHHHHHHHHHHHhcCCcc
Q 007749 505 NKPGFYLVLGSSN------VDEGLRGYLTKYDCSSADINPIGSI---SKQDLRTFLRWAATHLGYSS 562 (591)
Q Consensus 505 ~~~g~~lvl~t~n------~sE~~~G~~t~~gd~~~~~~Pl~~l---~K~~v~~l~~~~~~~~~~~i 562 (591)
++.|. -++.||+ .++...|+.++..+ ...+.||.++ +|.+|+++ +++.|+|+
T Consensus 104 ~~~G~-~~IatG~~~d~nDq~~f~~g~~~l~p~-l~ii~PL~~~~~~tK~eI~~y----a~~~gip~ 164 (400)
T 1kor_A 104 EEEGA-EAIAHGATGKGNDQVRFELTAYALKPD-IKVIAPWREWSFQGRKEMIAY----AEAHGIPV 164 (400)
T ss_dssp HHHTC-SEEECCCCTTSSHHHHHHHHHHHHCTT-CEEECGGGTCCCCSHHHHHHH----HHHTTCCC
T ss_pred HHcCC-CEEEECCCCCcccHHHHHHHHHhcCCC-CEEEEeecccccCCHHHHHHH----HHHcCCCc
Confidence 34453 4444544 23455676666543 3569999988 99999999 66677763
No 37
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.94 E-value=8.2e-10 Score=106.24 Aligned_cols=137 Identities=17% Similarity=0.186 Sum_probs=82.6
Q ss_pred CCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHh
Q 007749 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (591)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~ 426 (591)
+.++++|++|||+||++++.++. . .+. .+.++++......
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll~--------~--------------~g~----------------~v~~~~v~~~~~~-- 44 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILK--------K--------------LGY----------------NPHLITINFGVIP-- 44 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHH--------H--------------TTE----------------EEEEEEEECSSSC--
T ss_pred cCCeEEEEEECcHHHHHHHHHHH--------H--------------cCC----------------CeEEEEEeCCCch--
Confidence 35789999999999999887762 1 232 4788888765444
Q ss_pred hHHHHHHHHHHhCCceEEEecHHHH-HHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCccccc
Q 007749 427 TRMLAKKLADEIGSWHLDVSIDTVV-SAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHN 505 (591)
Q Consensus 427 t~~~A~~la~~lG~~~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~~ 505 (591)
+.+.|+++|+.+|++|+++++++.+ ......+.. .+. | .|...|+|..++..+| .
T Consensus 45 ~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~-~~~-~---------------~~~c~~~~~~~l~~~A-------~ 100 (203)
T 3k32_A 45 SYKLAEETAKILGFKHKVITLDRKIVEKAADMIIE-HKY-P---------------GPAIQYVHKTVLEILA-------D 100 (203)
T ss_dssp TTHHHHHHHHHHTCEEEEEECCTHHHHHHHHHHHH-HSS-S---------------HHHHHHHHHHHHHHHT-------T
T ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-cCC-C---------------ccHHHHHHHHHHHHHh-------c
Confidence 6789999999999999999998643 222222221 010 1 2334455554444333 2
Q ss_pred CCCCeEEEcCCchhhhhc-----cc---ccccCCCCCCCcCCCCCcHHHHHHHH
Q 007749 506 KPGFYLVLGSSNVDEGLR-----GY---LTKYDCSSADINPIGSISKQDLRTFL 551 (591)
Q Consensus 506 ~~g~~lvl~t~n~sE~~~-----G~---~t~~gd~~~~~~Pl~~l~K~~v~~l~ 551 (591)
|...++...|.++.+- |. ...+ ....+.||.+++|.+|++++
T Consensus 101 --g~~~i~tGh~~dD~~et~~~~gl~~~~~~~--~~~iirPLl~~~k~eI~~~a 150 (203)
T 3k32_A 101 --EYSILADGTRRDDRVPKLSYSEIQSLEMRK--NIQYITPLMGFGYKTLRHLA 150 (203)
T ss_dssp --TCSEEECCCCTTCCSSCCCHHHHHHHHHHH--TCEEECGGGGCCHHHHHHHH
T ss_pred --CCCEEEECCCcccchhhcchhhccCccccc--CCeEEeccCCCCHHHHHHHH
Confidence 3222333333443321 11 1111 23468999999999999993
No 38
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=98.88 E-value=9.1e-09 Score=105.85 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=89.3
Q ss_pred CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcce-EEEEecCCCCC--C
Q 007749 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRI-FYTVFMGSENS--S 424 (591)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~m~~~~s--s 424 (591)
.++++|++|||+||++++.++. +.. . ..+. . ++++++..... +
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~-------~~~-~----------~~g~----------------~~v~av~vd~g~r~~s 69 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLL-------KLK-N----------YFSL----------------KEVALAHFNHMLRESA 69 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHH-------HST-T----------TTTC----------------SEEEEEEEECCSSTHH
T ss_pred CCEEEEEecchHHHHHHHHHHH-------HHH-H----------HcCC----------------CEEEEEEEECCCCccc
Confidence 3689999999999999887763 210 0 0121 4 78888875443 4
Q ss_pred HhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHHHHHHHccCcccc
Q 007749 425 QETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVH 504 (591)
Q Consensus 425 ~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~l~~~a~~~~~~~ 504 (591)
+.+.+.++++|+.+|+++++++++. ..+ ....+ + +. +..-.+.|...+..+|.
T Consensus 70 ~~~~~~v~~~a~~lgi~~~v~~~~~--~~~----~~~~~--~-----------~~--e~~ar~~Ry~~l~~~a~------ 122 (317)
T 1wy5_A 70 ERDEEFCKEFAKERNMKIFVGKEDV--RAF----AKENR--M-----------SL--EEAGRFLRYKFLKEILE------ 122 (317)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCH--HHH----HHHTT--C-----------CH--HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEec--hhh----hccCC--C-----------CH--HHHHHHHHHHHHHHHHH------
Confidence 6778889999999999999999863 221 11111 1 11 22222456666665554
Q ss_pred cCCCCeEEEcCCc-hh---hhh-----cccc--cccCCC---CCCCcCCCCCcHHHHHHHHHHHHHhcCCc
Q 007749 505 NKPGFYLVLGSSN-VD---EGL-----RGYL--TKYDCS---SADINPIGSISKQDLRTFLRWAATHLGYS 561 (591)
Q Consensus 505 ~~~g~~lvl~t~n-~s---E~~-----~G~~--t~~gd~---~~~~~Pl~~l~K~~v~~l~~~~~~~~~~~ 561 (591)
+.|. -++.||+ .+ |.. .|-. .+.|.. ...+.||.+++|.+|+++ ++..|+|
T Consensus 123 -~~g~-~~i~~Gh~~dD~~Et~l~~l~rg~g~~gl~~~~~~~~~iirPLl~~~k~eI~~~----~~~~gl~ 187 (317)
T 1wy5_A 123 -SEGF-DCIATAHHLNDLLETSLLFFTRGTGLDGLIGFLPKEEVIRRPLYYVKRSEIEEY----AKFKGLR 187 (317)
T ss_dssp -HTTC-SEEECCCCHHHHHHHHHHHHHHCCCHHHHHCSCSEETTEECTTTTCCHHHHHHH----HHHTTCC
T ss_pred -HcCC-CEEEEeCchhHHHHHHHHHHHhCCCcccccCCCCCCCeEECCCccCCHHHHHHH----HHHcCCC
Confidence 3353 3344443 33 321 1111 011211 258899999999999999 7778887
No 39
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=98.88 E-value=5.3e-09 Score=110.76 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=90.3
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++|++|||+||++++.++. + .+. .|+++++..... .+.
T Consensus 6 ~kVvvalSGGlDSsvll~lL~-------e---------------~G~----------------eV~av~vd~g~~--~e~ 45 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWLK-------E---------------QGY----------------DVIAYLANIGQK--EDF 45 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHHH-------H---------------TTE----------------EEEEEEEESSCC--CCH
T ss_pred CeEEEEEcChHHHHHHHHHHH-------H---------------cCC----------------EEEEEEEECCcH--HHH
Confidence 689999999999999877762 2 122 488999986543 568
Q ss_pred HHHHHHHHHhCCc-eEEEecHHHHHH-HH-HHhhhhhCCCCCcccCCCCCCCchhhhhhhhh-hcHHHHHHHHccCcccc
Q 007749 429 MLAKKLADEIGSW-HLDVSIDTVVSA-FL-SLFQTLTGKRPCYKVDGGSNVENLGLQNIQAR-IRMVLAFMLASLLPWVH 504 (591)
Q Consensus 429 ~~A~~la~~lG~~-~~~i~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR-~R~~~l~~~a~~~~~~~ 504 (591)
+.|+++|+.+|++ ++++++++.+.. +. ..+.. +..+ ..+ ....+..+| +|...+..+|.
T Consensus 46 e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~--~a~~--------e~~-y~~g~~~aRp~i~~~l~~~A~------ 108 (413)
T 2nz2_A 46 EEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQS--SALY--------EDR-YLLGTSLARPCIARKQVEIAQ------ 108 (413)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHT--TCCB--------TTT-BCCTTTTHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHHh--Cccc--------ccc-cccccccchHHHHHHHHHHHH------
Confidence 9999999999998 899999754421 11 11211 1100 001 111222222 33444444443
Q ss_pred cCCCCeEEEcCCchh------hhhcccccccCCCCCCCcCCC------CC-cHHHHHHHHHHHHHhcCCc
Q 007749 505 NKPGFYLVLGSSNVD------EGLRGYLTKYDCSSADINPIG------SI-SKQDLRTFLRWAATHLGYS 561 (591)
Q Consensus 505 ~~~g~~lvl~t~n~s------E~~~G~~t~~gd~~~~~~Pl~------~l-~K~~v~~l~~~~~~~~~~~ 561 (591)
+.|. -++.||+.. +..+|+..+..+ ...+.|+. ++ +|++|+++ ++++|+|
T Consensus 109 -~~Ga-~~IatGh~~~~nDq~rf~lg~~~l~p~-l~ii~Pl~d~~~ll~~~sK~EI~~y----A~~~Gip 171 (413)
T 2nz2_A 109 -REGA-KYVSHGATGKGNDQVRFELSCYSLAPQ-IKVIAPWRMPEFYNRFKGRNDLMEY----AKQHGIP 171 (413)
T ss_dssp -HHTC-SEEECCCCTTSSHHHHHHHHHHHHCTT-CEEECGGGCHHHHTTCC-CHHHHHH----HHHTTCC
T ss_pred -HcCC-CEEEECCcCcccchHHHHHHHHhcCCC-CceeccccchhhhccCCCHHHHHHH----HHHcCCC
Confidence 3353 455555432 334454444322 46789999 88 99999999 7778887
No 40
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=98.80 E-value=2.2e-08 Score=96.98 Aligned_cols=72 Identities=13% Similarity=0.007 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 007749 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (591)
Q Consensus 339 l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m 418 (591)
|+..+++.| ++++|++|||.||++++.++. +. +. .+.++++
T Consensus 36 l~~~~~~~~-~~v~Va~SGGkDS~vLL~ll~-------~~---------------~~----------------~v~~v~v 76 (215)
T 1sur_A 36 VAWALDNLP-GEYVLSSSFGIQAAVSLHLVN-------QI---------------RP----------------DIPVILT 76 (215)
T ss_dssp HHHHHHHCC-SEEEEECCCCTTHHHHHHHHH-------HH---------------ST----------------TCEEEEE
T ss_pred HHHHHHHcC-CCEEEEecCCHHHHHHHHHHH-------Hh---------------CC----------------CCeEEEe
Confidence 444455544 689999999999999888773 22 21 2678888
Q ss_pred CCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 419 ~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.+....+++.+.++++|+.+|++++++..+.
T Consensus 77 d~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~ 107 (215)
T 1sur_A 77 DTGYLFPETYRFIDELTDKLKLNLKVYRATE 107 (215)
T ss_dssp ECSCBCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred eCCCCCHHHHHHHHHHHHHhCCcEEEEeCCC
Confidence 7766678899999999999999999997754
No 41
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=98.77 E-value=1.9e-08 Score=107.02 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=52.3
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++|++|||+||++++.++. + .|. .|+++++.....++.+.
T Consensus 11 ~KVvVA~SGGlDSSvll~~L~-------e---------------~G~----------------eViavtvd~Gq~~~~el 52 (455)
T 1k92_A 11 QRIGIAFSGGLDTSAALLWMR-------Q---------------KGA----------------VPYAYTANLGQPDEEDY 52 (455)
T ss_dssp SEEEEECCSSHHHHHHHHHHH-------H---------------TTC----------------EEEEEEEECCCTTCSCT
T ss_pred CeEEEEEcChHHHHHHHHHHH-------H---------------cCC----------------EEEEEEEEcCCCCHHHH
Confidence 689999999999999877762 2 232 48899987654445678
Q ss_pred HHHHHHHHHhCC-ceEEEecHHHH
Q 007749 429 MLAKKLADEIGS-WHLDVSIDTVV 451 (591)
Q Consensus 429 ~~A~~la~~lG~-~~~~i~i~~~~ 451 (591)
+.|+++|+.+|+ +|+++|+.+.+
T Consensus 53 e~a~~~A~~lGi~~~~vvD~~eef 76 (455)
T 1k92_A 53 DAIPRRAMEYGAENARLIDCRKQL 76 (455)
T ss_dssp THHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeChHHH
Confidence 999999999999 89999997644
No 42
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=98.69 E-value=1.3e-07 Score=102.20 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=94.3
Q ss_pred HHHHHHhC----CCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEE
Q 007749 340 WDYLRRSG----ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYT 415 (591)
Q Consensus 340 ~d~l~~~~----~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 415 (591)
.+++++.+ .++++||+|||+||++++.++..+. + +.+. .+++
T Consensus 6 ~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~----~--------------~~~~----------------~v~a 51 (464)
T 3a2k_A 6 RAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLR----D--------------EWKL----------------QVIA 51 (464)
T ss_dssp HHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHH----H--------------TTTC----------------BCEE
T ss_pred HHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHH----H--------------HcCC----------------eEEE
Confidence 44555543 3689999999999999888773210 0 0121 4788
Q ss_pred EecCCCCC---CHhhHHHHHHHHHHhCCceEEEecHHHHHHHHHHhhhhhCCCCCcccCCCCCCCchhhhhhhhhhcHHH
Q 007749 416 VFMGSENS---SQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVL 492 (591)
Q Consensus 416 v~m~~~~s---s~~t~~~A~~la~~lG~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~N~qaR~R~~~ 492 (591)
+++..... ++.+.+.++++|+.+|+++++++++. ..+ ....+ + +. |....+.|...
T Consensus 52 vhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~~--~~~----~~~~~--~--------~~-----e~~aR~~Ry~~ 110 (464)
T 3a2k_A 52 AHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDV--PAF----QRSAG--L--------GA-----QEAARICRYRF 110 (464)
T ss_dssp EEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCC--HHH----HTTTT--C--------CS-----HHHHHHHHHHH
T ss_pred EEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEech--hhh----hhccC--C--------CH-----HHHHHHHHHHH
Confidence 88875544 35677889999999999999998863 111 11001 1 11 22223456666
Q ss_pred HHHHHccCcccccCCCCeEEEcCCc-hh---hh-----hcccc--cccCCC-------CCCCcCCCCCcHHHHHHHHHHH
Q 007749 493 AFMLASLLPWVHNKPGFYLVLGSSN-VD---EG-----LRGYL--TKYDCS-------SADINPIGSISKQDLRTFLRWA 554 (591)
Q Consensus 493 l~~~a~~~~~~~~~~g~~lvl~t~n-~s---E~-----~~G~~--t~~gd~-------~~~~~Pl~~l~K~~v~~l~~~~ 554 (591)
+..+|. +.|. -+|.||| .+ |. ..|-. .+.|+. ...+.||.+++|.||+++
T Consensus 111 l~~~a~-------~~g~-~~IatgH~~dD~aEt~L~~l~rG~g~~gL~gm~~~~~~~~~~iiRPLl~~~k~eI~~y---- 178 (464)
T 3a2k_A 111 FAELME-------KHQA-GYVAVGHHGDDQVETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFLAVSRAEIEAY---- 178 (464)
T ss_dssp HHHHHH-------TTTC-CEEECCCCHHHHHHHHHHHHHHCCCSSSTTCSCSEEECSSSEEECGGGGSCHHHHHHH----
T ss_pred HHHHHH-------HcCc-CEEEEeCChHHHHHHHHHHHHcCCCcccccCCCccccCCCCEEECCCccCcHHHHHHH----
Confidence 665443 4453 4555554 33 32 12211 112221 357899999999999999
Q ss_pred HHhcCCc
Q 007749 555 ATHLGYS 561 (591)
Q Consensus 555 ~~~~~~~ 561 (591)
++..|++
T Consensus 179 a~~~gl~ 185 (464)
T 3a2k_A 179 CRQMGLS 185 (464)
T ss_dssp HHHTCCS
T ss_pred HHHcCCC
Confidence 7778887
No 43
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.61 E-value=1.6e-07 Score=93.23 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=52.1
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++|++|||.||++++.|+. +. .. .+.++++.+....++|.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~-------~~---------------~~----------------~v~vv~idtg~~~~et~ 87 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVN-------QI---------------RP----------------DIPVILTDTGYLFPETY 87 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHH-------HH---------------ST----------------TCEEEECCCSCBCHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHH-------Hh---------------CC----------------CCeEEEecCCCCCHHHH
Confidence 579999999999999887773 21 21 36789998877788999
Q ss_pred HHHHHHHHHhCCceEEEecHH
Q 007749 429 MLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 429 ~~A~~la~~lG~~~~~i~i~~ 449 (591)
+.++++|+.+|++++++..+.
T Consensus 88 ~~~~~~~~~~gi~~~v~~~~~ 108 (252)
T 2o8v_A 88 RFIDELTDKLKLNLKVYRATE 108 (252)
T ss_dssp HHHHHHHHHTTCEEEECCCSS
T ss_pred HHHHHHHHHhCCceEEEcCCC
Confidence 999999999999999987653
No 44
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=98.49 E-value=1.2e-06 Score=93.85 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEE
Q 007749 336 GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYT 415 (591)
Q Consensus 336 ~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 415 (591)
..-|.+++.+. ++++||+|||+||++++.++. +.... ..+. .+++
T Consensus 3 ~~~l~~~l~~~--~~vlVa~SGG~DS~~Ll~ll~-------~~~~~----------~~g~----------------~v~a 47 (433)
T 1ni5_A 3 TLTLNRQLLTS--RQILVAFSGGLDSTVLLHQLV-------QWRTE----------NPGV----------------ALRA 47 (433)
T ss_dssp HHHHHHHHTTC--SEEEEECCSBHHHHHHHHHHH-------HHHTT----------STTC----------------EEEE
T ss_pred ChhHHHhcCCC--CEEEEEEcchHHHHHHHHHHH-------HHHHh----------cCCC----------------eEEE
Confidence 34466666653 789999999999999887773 21000 0111 4889
Q ss_pred EecCCCCC--CHhhHHHHHHHHHHhCCceEEEecH
Q 007749 416 VFMGSENS--SQETRMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 416 v~m~~~~s--s~~t~~~A~~la~~lG~~~~~i~i~ 448 (591)
+++..... ++.+.+.++++|+.+|++|++++++
T Consensus 48 vhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~ 82 (433)
T 1ni5_A 48 IHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQ 82 (433)
T ss_dssp EEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred EEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 99875433 4567788999999999999999885
No 45
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.35 E-value=2.3e-06 Score=93.56 Aligned_cols=83 Identities=29% Similarity=0.319 Sum_probs=58.5
Q ss_pred CHHHHHhchhHHHHHHHHHh--CCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCC
Q 007749 327 PEEEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (591)
Q Consensus 327 ~~~e~~~~~~~~l~d~l~~~--~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~ 404 (591)
..++....+...|.+-+++. ....+.+.||||+||+++|+++. +. +.
T Consensus 218 ~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~-------~~---------------~~--------- 266 (513)
T 1jgt_A 218 PEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAH-------RA---------------AG--------- 266 (513)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHH-------HH---------------HS---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHH-------Hh---------------CC---------
Confidence 34555555666666666653 23589999999999999998873 22 11
Q ss_pred hHHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 405 ~~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.++++++.... ..+...|+++|+.+|++|+++++++
T Consensus 267 -------~v~tfti~~~~--~~E~~~A~~vA~~lg~~h~~i~i~~ 302 (513)
T 1jgt_A 267 -------ELDTVSMGTDT--SNEFREARAVVDHLRTRHREITIPT 302 (513)
T ss_dssp -------SCEEEEEECSS--CCCHHHHHHHHHHHTCEEEEEECCH
T ss_pred -------CceEEEcCCCC--CCHHHHHHHHHHHhCCCcEEEECCH
Confidence 14455544332 3567889999999999999999976
No 46
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=98.33 E-value=3.8e-07 Score=93.01 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=49.6
Q ss_pred CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEecCCCCCCHhhH
Q 007749 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (591)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m~~~~ss~~t~ 428 (591)
++++++||| +||+++|+++. + .|. .+++++|. .++.+.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~-------~---------------~G~----------------~v~~v~~~---~~~~~~ 217 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMM-------K---------------RGV----------------EVIPVYIG---KDDKNL 217 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHH-------H---------------BTC----------------EEEEEEES---CSSHHH
T ss_pred CcEEEEEeC-CcHHHHHHHHH-------h---------------CCC----------------eEEEEEEE---ECHHHH
Confidence 479999999 99999888762 2 243 48999998 456678
Q ss_pred HHHHHHHHHh-------CCceEEEe-cHHHH
Q 007749 429 MLAKKLADEI-------GSWHLDVS-IDTVV 451 (591)
Q Consensus 429 ~~A~~la~~l-------G~~~~~i~-i~~~~ 451 (591)
+.|+++|+.| |++++.+| +.+.+
T Consensus 218 ~~a~~~a~~l~~~~~~~~i~~~vv~~~~~~~ 248 (307)
T 1vbk_A 218 EKVRSLWNLLKRYSYGSKGFLVVAESFDRVL 248 (307)
T ss_dssp HHHHHHHHHHHTTCTTSCCCCEEESSHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCcEEEeCCCHHHH
Confidence 8999999999 89999999 87655
No 47
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.30 E-value=2e-06 Score=93.80 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=55.6
Q ss_pred HHHHHhchhHHHHHHHHHh--CCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCCh
Q 007749 328 EEEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDS 405 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~~~--~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (591)
.++....+...|.+-+++. ....+.+.||||+||+++|+++. +. +.
T Consensus 216 ~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~-------~~---------------~~---------- 263 (503)
T 1q15_A 216 REPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALAS-------RH---------------FK---------- 263 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHT-------TT---------------CS----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHH-------Hh---------------CC----------
Confidence 3444444444444444442 23579999999999999988872 11 11
Q ss_pred HHhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 406 REFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 406 ~~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.+.++++.... ..+...|+++|+.+|++|+++++++
T Consensus 264 ------~~~~~t~~~~~--~~E~~~A~~vA~~lg~~h~~i~~~~ 299 (503)
T 1q15_A 264 ------KLNTYSIGTEL--SNEFEFSQQVADALGTHHQMKILSE 299 (503)
T ss_dssp ------EEEEEEEEETT--BCCHHHHHHHHHHHTCEEEEEEECH
T ss_pred ------CcEEEEEeCCC--ccHHHHHHHHHHHhCCceEEEECCH
Confidence 35666655432 3567889999999999999999986
No 48
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=98.24 E-value=5e-06 Score=91.69 Aligned_cols=93 Identities=22% Similarity=0.256 Sum_probs=57.8
Q ss_pred HHHHHhchhHHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhcc-CCCCCCCCChH
Q 007749 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGH-YANGEFPTDSR 406 (591)
Q Consensus 328 ~~e~~~~~~~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~-~~~~~~~~~~~ 406 (591)
.+++...+...++.+|. ....+.+.||||+||+++|+++. +...+ .. .+. .+..+.|
T Consensus 208 ~~~lr~~L~~aV~~rl~--sdvpvgv~LSGGlDSS~iaala~-------~~~~~---~~------~~~~~~~a~~~---- 265 (553)
T 1ct9_A 208 KNELRQALEDSVKSHLM--SDVPYGVLLSGGLDSSIISAITK-------KYAAR---RV------EDQERSEAWWP---- 265 (553)
T ss_dssp HHHHHHHHHHHHHHHTC--CSSCEEEECCSSHHHHHHHHHHH-------HHC----------------------------
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEeCCCCccHHHHHHHHH-------Hhhcc---cc------ccccccccccC----
Confidence 35666666666665554 23579999999999999999883 32110 00 000 0000000
Q ss_pred HhhcceEEEEecCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 407 EFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 407 ~~~~~~v~~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.++++++....+ .+...|+++|+.||++|+++++++
T Consensus 266 -----~l~tfsig~~~~--~E~~~A~~vA~~lg~~h~~i~~~~ 301 (553)
T 1ct9_A 266 -----QLHSFAVGLPGS--PDLKAAQEVANHLGTVHHEIHFTV 301 (553)
T ss_dssp ------CEEEEEESTTC--HHHHHHHHHHHHHTCEEEEEECCH
T ss_pred -----ceeEEEecCCCC--cHHHHHHHHHHHhCCCCEEEECCH
Confidence 256666654333 567889999999999999999865
No 49
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.2e-05 Score=79.99 Aligned_cols=73 Identities=8% Similarity=-0.053 Sum_probs=55.4
Q ss_pred HHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 007749 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (591)
Q Consensus 339 l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m 418 (591)
|+..+++. .+++|++|||.||++++.|+. +. ...+ ..+..+++
T Consensus 34 l~~a~~~~--~~v~va~SGGkDS~vLL~ll~-------~~---------------~~~~-------------~~i~vv~i 76 (261)
T 2oq2_A 34 IAWSIVTF--PHLFQTTAFGLTGLVTIDMLS-------KL---------------SEKY-------------YMPELLFI 76 (261)
T ss_dssp HHHHHHHC--SSEEEECCCCHHHHHHHHHHH-------HH---------------TTTS-------------CCCEEEEE
T ss_pred HHHHHHHC--CCEEEEecCCHHHHHHHHHHH-------Hh---------------CccC-------------CCeeEEEe
Confidence 44445554 489999999999999888773 22 1100 03678888
Q ss_pred CCCCCCHhhHHHHHHHHHHhCC----ceEEEecH
Q 007749 419 GSENSSQETRMLAKKLADEIGS----WHLDVSID 448 (591)
Q Consensus 419 ~~~~ss~~t~~~A~~la~~lG~----~~~~i~i~ 448 (591)
.+....++|.+.++++|+.+|+ +++++..+
T Consensus 77 Dtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~ 110 (261)
T 2oq2_A 77 DTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPD 110 (261)
T ss_dssp CCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECST
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecC
Confidence 8887789999999999999999 99888764
No 50
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=98.07 E-value=3.8e-05 Score=78.80 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEE
Q 007749 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (591)
Q Consensus 337 ~~l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 416 (591)
.-|+..+.+. ++++|++|||.||++++.|+. ++.. .... .+.++
T Consensus 37 ~ilr~~~~~~--~~ivVa~SGGkDS~vLL~Ll~-------~~~~------------~~~~---------------~i~vv 80 (325)
T 1zun_A 37 HIIREVAAEF--DNPVMLYSIGKDSAVMLHLAR-------KAFF------------PGKL---------------PFPVM 80 (325)
T ss_dssp HHHHHHHHHC--SSEEEECCSSHHHHHHHHHHH-------HHHT------------TSCC---------------SSCEE
T ss_pred HHHHHHHHhC--CCEEEEEcChHHHHHHHHHHH-------Hhcc------------ccCC---------------CEEEE
Confidence 3455555553 689999999999999888773 3321 0010 26678
Q ss_pred ecCCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 417 ~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
++.+....+++.+.++++|+.+|+++.++..+.
T Consensus 81 ~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~ 113 (325)
T 1zun_A 81 HVDTRWKFQEMYRFRDQMVEEMGLDLITHINPD 113 (325)
T ss_dssp EECCSCCCHHHHHHHHHHHHTTTCCEEEECC--
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 888877788999999999999999999998754
No 51
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=98.03 E-value=4.1e-05 Score=77.95 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=57.5
Q ss_pred HHHHHHHhCC--CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCC--CCCCCCChHHhhcceEE
Q 007749 339 LWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA--NGEFPTDSREFAKRIFY 414 (591)
Q Consensus 339 l~d~l~~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~ 414 (591)
|++.+++.+. +.++|++|||.||++++.|+. ++++.. ...+.. ....+ ....+ ...+.
T Consensus 42 l~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~-------~~l~~~---~~~~~~-~~~~~~~~~~~~-------~~~i~ 103 (306)
T 2wsi_A 42 LSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYL-------SCLWEY---FFIKAQ-NSQFDFEFQSFP-------MQRLP 103 (306)
T ss_dssp HHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHH-------HHHHHH---HHHHHH-HC--------CC-------CCCEE
T ss_pred HHHHHHHcccccCCEEEEecCCHHHHHHHHHHH-------HHHhhh---cccccc-cccccccccccC-------CCCee
Confidence 3334444443 589999999999999888873 332100 000000 00000 00000 01478
Q ss_pred EEecCCCCCCHhhHHHHHHHHHHhCCceEEEecH
Q 007749 415 TVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (591)
Q Consensus 415 ~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~i~ 448 (591)
++|+.+....+++.+.++++++.+|+++.++..+
T Consensus 104 vv~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~ 137 (306)
T 2wsi_A 104 TVFIDQEETFPTLENFVLETSERYCLSLYESQRQ 137 (306)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999988889999999999999999999888765
No 52
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=97.95 E-value=0.0001 Score=73.84 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=55.0
Q ss_pred HHHHHHHhCCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec
Q 007749 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (591)
Q Consensus 339 l~d~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m 418 (591)
|+..++..| ++++|++| |.||++++.|+. + ++. .+..+++
T Consensus 46 l~~a~~~~g-~~i~Va~S-GkDS~vLL~Ll~-------~---------------~~~----------------~i~vv~i 85 (275)
T 2goy_A 46 LKAAFEHFG-DELWISFS-GAEDVVLVDMAW-------K---------------LNR----------------NVKVFSL 85 (275)
T ss_dssp HHHHHHHHS-TTEEEECC-SSTTHHHHHHHH-------H---------------HCT----------------TCCEEEE
T ss_pred HHHHHHHcC-CCEEEEee-cHHHHHHHHHHH-------H---------------hCC----------------CceEEEE
Confidence 444444445 78999999 999999887762 2 121 2567888
Q ss_pred CCCCCCHhhHHHHHHHHHHhCCceEEEecHH
Q 007749 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (591)
Q Consensus 419 ~~~~ss~~t~~~A~~la~~lG~~~~~i~i~~ 449 (591)
.+....++|.+.++++|+.+|+++.++..+.
T Consensus 86 Dtg~~~~et~~~v~~~~~~~gi~l~v~~~~~ 116 (275)
T 2goy_A 86 DTGRLHPETYRFIDQVREHYGIAIDVLSPDP 116 (275)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTCCCEEECCCH
T ss_pred eCCCCCHHHHHHHHHHHHHHCCeEEEEeCCc
Confidence 8877789999999999999999999887653
No 53
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.80 E-value=1.9e-05 Score=76.95 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=43.7
Q ss_pred CCCcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCCCCCCCChHHhhcceEEEEec--CCC-CC
Q 007749 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM--GSE-NS 423 (591)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~m--~~~-~s 423 (591)
+..++++++|||.||+++++++ .+ .|. .|.++++ +.. .+
T Consensus 3 ~~MKvvvl~SGGkDSs~al~~l-------~~---------------~G~----------------eV~~L~~~~~~~~~s 44 (237)
T 3rjz_A 3 GLADVAVLYSGGKDSNYALYWA-------IK---------------NRF----------------SVKFLVTMVSENEES 44 (237)
T ss_dssp CCSEEEEECCSSHHHHHHHHHH-------HH---------------TTC----------------EEEEEEEEECC----
T ss_pred CCCEEEEEecCcHHHHHHHHHH-------HH---------------cCC----------------eEEEEEEEcCCCCCc
Confidence 3458999999999999987776 22 233 3666543 211 01
Q ss_pred ---CHhhHHHHHHHHHHhCCceEEEecHHH
Q 007749 424 ---SQETRMLAKKLADEIGSWHLDVSIDTV 450 (591)
Q Consensus 424 ---s~~t~~~A~~la~~lG~~~~~i~i~~~ 450 (591)
.....+.|+..|+.||++++++++...
T Consensus 45 ~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~ 74 (237)
T 3rjz_A 45 YMYHTINANLTDLQARALGIPLVKGFTQGE 74 (237)
T ss_dssp ----CCSSSHHHHHHHHHTCCEEEEEC---
T ss_pred cccCCccHHHHHHHHHHcCCCEEEEECCCC
Confidence 123457899999999999999999753
No 54
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=95.24 E-value=0.04 Score=55.32 Aligned_cols=92 Identities=9% Similarity=0.099 Sum_probs=55.0
Q ss_pred HHHHHHHHhCC--CcEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhccCCC-CCCCCChHHhhcceEE
Q 007749 338 WLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYAN-GEFPTDSREFAKRIFY 414 (591)
Q Consensus 338 ~l~d~l~~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~al~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~ 414 (591)
-|++-+++.+. +.++++.|||.||++++.|+. +++... +. ......+. ......| ...+-
T Consensus 46 iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~~-------kal~~~---~~---~~~~~~~~~~~~~~~p----~~~ip 108 (308)
T 3fwk_A 46 LINETFPKWSPLNGEISFSYNGGKDCQVLLLLYL-------SCLWEY---YI---VKLSQSQFDGKFHRFP----LTKLP 108 (308)
T ss_dssp HHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHH-------HHHHHH---HT---CCE---------------------E
T ss_pred HHHHHHHHcccccCCEEEEecCChhHHHHHHHHH-------HHhhhh---cc---cccccccccccccccC----CCCcc
Confidence 44455555554 579999999999999888873 332100 00 00000000 0000000 00367
Q ss_pred EEecCCCCCCHhhHHHHHHHHHHhCCceEEEe
Q 007749 415 TVFMGSENSSQETRMLAKKLADEIGSWHLDVS 446 (591)
Q Consensus 415 ~v~m~~~~ss~~t~~~A~~la~~lG~~~~~i~ 446 (591)
.+++.+...-++|.+-..++++.+|++..++.
T Consensus 109 vifiDTG~~FpET~ef~d~~~~~ygL~L~v~~ 140 (308)
T 3fwk_A 109 TVFIDHDDTFKTLENFIEETSLRYSLSLYESD 140 (308)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHTTEEEEECC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCcEEEeC
Confidence 89999999999999999999999999877653
No 55
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=66.12 E-value=28 Score=32.82 Aligned_cols=63 Identities=6% Similarity=-0.239 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
.+..++.+.+.++.|++-|++.|++. +|+.+.+. ...+..+...+.+.++++.++++|+.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~~ 142 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVM----AGVVPAGE-DAERYRAVFIDNIRYAADRFAPHGKRILV 142 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECC----CCBCCTTS-CHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC----cCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 46778889999999999999999873 45433221 12233445566778887777778876543
No 56
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=64.89 E-value=16 Score=35.41 Aligned_cols=61 Identities=16% Similarity=0.048 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
.+..++.+.+.++.|+.-|++.|++. +|+.+.+ .....+...+.+.++++.++++|+.+.+
T Consensus 97 r~~~~~~~~~~i~~a~~lG~~~v~~~----~G~~~~~---~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 157 (290)
T 3tva_A 97 RASRVAEMKEISDFASWVGCPAIGLH----IGFVPES---SSPDYSELVRVTQDLLTHAANHGQAVHL 157 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEC----CCCCCCT---TSHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEc----CCCCccc---chHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 46778899999999999999998874 4665544 2333455666788888877788987654
No 57
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=64.66 E-value=26 Score=33.45 Aligned_cols=63 Identities=11% Similarity=-0.136 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 17 DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 17 d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
..+..++.+.+.++.|+.-|++.|++. +| .+.+. ......+...+.|.++++.++++|+.+.+
T Consensus 87 ~r~~~~~~~~~~i~~A~~lGa~~v~~~----~g-~~~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 149 (269)
T 3ngf_A 87 REQEFRDNVDIALHYALALDCRTLHAM----SG-ITEGL-DRKACEETFIENFRYAADKLAPHGITVLV 149 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEECC----BC-BCTTS-CHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEc----cC-CCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 356778889999999999999999873 34 22221 12233455566788888877778877553
No 58
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=63.34 E-value=20 Score=35.37 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=48.5
Q ss_pred eEEEEEecCCC-----CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccC
Q 007749 4 LKVATCNLNNW-----ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (591)
Q Consensus 4 ~kVAl~Q~~~~-----~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (591)
++|..+..... ..+.+...+.+.+.++.|++-|++.|++| |+... ...+-.+...+.|.++++.+++
T Consensus 90 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~-----~~~~~---~~~~~~~~~~~~l~~l~~~a~~ 161 (305)
T 3obe_A 90 LRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQP-----SLPRI---ENEDDAKVVSEIFNRAGEITKK 161 (305)
T ss_dssp CEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEEC-----CCCCC---SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeC-----CCCCC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 56665554331 22346678888899999999999999987 22221 1222334556678888887778
Q ss_pred CCeEEEE
Q 007749 79 DGILCSF 85 (591)
Q Consensus 79 ~~i~iiv 85 (591)
+|+.+.+
T Consensus 162 ~Gv~l~l 168 (305)
T 3obe_A 162 AGILWGY 168 (305)
T ss_dssp TTCEEEE
T ss_pred cCCEEEE
Confidence 8987654
No 59
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=62.91 E-value=18 Score=34.82 Aligned_cols=77 Identities=8% Similarity=-0.032 Sum_probs=48.9
Q ss_pred eEEEEEecC---CCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCC
Q 007749 4 LKVATCNLN---NWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (591)
Q Consensus 4 ~kVAl~Q~~---~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (591)
++|..+... +...+.+..++.+.+.++.|+.-|++.|++ .+|+...+.. .....+...+.|.++++.++++|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~----~~g~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~G 136 (286)
T 3dx5_A 62 LEITMISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRT----FAGQKGSADF-SQQERQEYVNRIRMICELFAQHN 136 (286)
T ss_dssp CCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEE----CSCSSCGGGS-CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEE----cCCCCCcccC-cHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555432 234556788899999999999999998865 2344332211 22233455667777877777788
Q ss_pred eEEEE
Q 007749 81 ILCSF 85 (591)
Q Consensus 81 i~iiv 85 (591)
+.+.+
T Consensus 137 v~l~l 141 (286)
T 3dx5_A 137 MYVLL 141 (286)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 76543
No 60
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=53.73 E-value=13 Score=35.57 Aligned_cols=62 Identities=13% Similarity=0.004 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
+..++.+.+.++.|+.-|++.|+++ +|+.+..........+...+.+.++++.++++|+.+.
T Consensus 79 ~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 140 (275)
T 3qc0_A 79 EKAIDDNRRAVDEAAELGADCLVLV----AGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLA 140 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEE----CBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEe----eCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4567888889999999999988875 3433321111223344556677777777667787654
No 61
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=51.43 E-value=21 Score=34.62 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCC-CcccccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC-EDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~-~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
+..++.+.+.++.|++-|++.|+++ |+.. .+. ......+...+.+.++++.++++|+.+.
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-----~~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 164 (295)
T 3cqj_A 104 AQGLEIMRKAIQFAQDVGIRVIQLA-----GYDVYYQE-ANNETRRRFRDGLKESVEMASRAQVTLA 164 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEC-----CCSCSSSC-CCHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-----CCCCCcCc-CHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4567888889999999999999986 2221 111 1223344555667777777666787654
No 62
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=49.44 E-value=32 Score=33.14 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc--ccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED--HFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d--~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
+..++.+.+.++.|+.-|++.|+++ +|+...+ ........+...+.|.++++.++++|+.+.+
T Consensus 100 ~~~~~~~~~~i~~a~~lGa~~v~~~----~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 164 (287)
T 3kws_A 100 KECMDTMKEIIAAAGELGSTGVIIV----PAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIF 164 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC----SCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe----cCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4677888899999999999988874 3433221 1022334455666777887777778876543
No 63
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=45.83 E-value=59 Score=33.43 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=30.8
Q ss_pred eEEEEEecCCC-------CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 007749 4 LKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPEL 45 (591)
Q Consensus 4 ~kVAl~Q~~~~-------~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl 45 (591)
++|+.++..+. ..+.+.-++.+++.|+.|++.|+.+|++..+
T Consensus 78 L~i~~i~s~~~~~~i~~~~~~r~~~ie~~k~~i~~aa~lGi~~v~~nf~ 126 (386)
T 3bdk_A 78 LEITVIESIPVHEDIKQGKPNRDALIENYKTSIRNVGAAGIPVVCYNFM 126 (386)
T ss_dssp CEEEEEECCCCCHHHHTTCTTHHHHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CEEEEEeccccccccccCcHHHHHHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 56766653222 3446778889999999999999999997444
No 64
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=44.74 E-value=35 Score=32.37 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
+..++.+.+.++.|+.-|++.|++ .+|+...+. ......+...+.+.++++.++++|+.+.+
T Consensus 80 ~~~~~~~~~~i~~a~~lG~~~v~~----~~g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 141 (278)
T 1i60_A 80 NEIITEFKGMMETCKTLGVKYVVA----VPLVTEQKI-VKEEIKKSSVDVLTELSDIAEPYGVKIAL 141 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEE----ECCBCSSCC-CHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEE----ecCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 456788889999999999999887 244433211 11233455566778887777778876543
No 65
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=44.11 E-value=67 Score=31.34 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeE--EEE
Q 007749 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGIL--CSF 85 (591)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~--iiv 85 (591)
.+...+.+.+.++.|++-|++.|++|- ++.. ...+-.+...+.|.++++.++++|+. +.+
T Consensus 103 ~~~~~~~~~~~i~~A~~lG~~~v~~~~-----~~~~---~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~ 164 (303)
T 3l23_A 103 TPKIMEYWKATAADHAKLGCKYLIQPM-----MPTI---TTHDEAKLVCDIFNQASDVIKAEGIATGFGY 164 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECS-----CCCC---CSHHHHHHHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECC-----CCCC---CCHHHHHHHHHHHHHHHHHHHHCCCcceEEE
Confidence 366688889999999999999999872 1211 12223345566788888877788887 543
No 66
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=43.04 E-value=53 Score=31.95 Aligned_cols=67 Identities=6% Similarity=-0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
+..++.+.+.++.|++-|++.|+.|=....|.............+...+.|.++++.++++|+.+.+
T Consensus 103 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 169 (309)
T 2hk0_A 103 AAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGINLCI 169 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4667888999999999999999854211113321111012233445566777777777678876543
No 67
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=42.55 E-value=28 Score=32.86 Aligned_cols=63 Identities=19% Similarity=0.085 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc-ccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF-LELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~-~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
+..++.+.+.++.|+.-|++.|++. +|+...+.. ......+...+.+.++++.++++|+.+.+
T Consensus 72 ~~~~~~~~~~i~~A~~lGa~~v~~~----~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 135 (254)
T 3ayv_A 72 GLTLRRLLFGLDRAAELGADRAVFH----SGIPHGRTPEEALERALPLAEALGLVVRRARTLGVRLLL 135 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEE----CCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC----CCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 4567888899999999999988764 454433211 11223344556677777766667876543
No 68
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=37.39 E-value=42 Score=31.93 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
+..++.+.+.++.|+.-|++.|+++ ..++. +. ......+...+.|.++++.++++|+.+.+
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~--~~p~~---~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 140 (281)
T 3u0h_A 80 LRELSLLPDRARLCARLGARSVTAF--LWPSM---DE-EPVRYISQLARRIRQVAVELLPLGMRVGL 140 (281)
T ss_dssp HHHHHTHHHHHHHHHHTTCCEEEEE--CCSEE---SS-CHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe--ecCCC---CC-cchhhHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4456677888999999999999853 11111 10 11223445566788888877778887643
No 69
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=35.88 E-value=88 Score=29.41 Aligned_cols=57 Identities=14% Similarity=-0.106 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHH-HHHHHHHHhcccCCCeEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-WECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~-~~~l~~la~~~~~~~i~iiv 85 (591)
+...+.+.+.++.|++-|++.|++ .+|+... +..+.. .+.+.++++.++++|+.+.+
T Consensus 81 ~~~~~~~~~~i~~a~~lG~~~v~~----~~g~~~~------~~~~~~~~~~l~~l~~~a~~~gv~l~~ 138 (272)
T 2q02_A 81 EEVVKKTEGLLRDAQGVGARALVL----CPLNDGT------IVPPEVTVEAIKRLSDLFARYDIQGLV 138 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEE----CCCCSSB------CCCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEE----ccCCCch------hHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 445678888899999999998876 2343211 222344 56677777776678876543
No 70
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=33.34 E-value=68 Score=31.04 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHhCCCcEEEEecC--Ccccccc--------hhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eCCcEE
Q 007749 186 DLALNGVEVFMNASG--SHHQLRK--------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMI 254 (591)
Q Consensus 186 ~la~~Gadlil~psa--s~~~~gk--------~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~G~il 254 (591)
..+.+|||+|+.|=. +.|.... .....+.++..|.+++++++.-...-.. ++..| -.++++ |+|+++
T Consensus 48 ~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~G~~~~~~-~~~~y-Ns~~~i~~~G~i~ 125 (281)
T 3p8k_A 48 KNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIR-NNQIF-NTAFSVNKSGQLI 125 (281)
T ss_dssp HHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEEEEEEEEE-TTEEE-EEEEEECTTSCEE
T ss_pred HHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEEeeeEEcc-CCcEE-EEEEEEcCCCeEE
Confidence 345579999999943 2332221 1233456778888899887643211011 12233 345566 899987
Q ss_pred Ee
Q 007749 255 AQ 256 (591)
Q Consensus 255 a~ 256 (591)
..
T Consensus 126 ~~ 127 (281)
T 3p8k_A 126 NE 127 (281)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 71
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=31.37 E-value=84 Score=30.04 Aligned_cols=64 Identities=6% Similarity=-0.051 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCC--CCcccccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYG--CEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~--~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
+..++.+.+.++.|++-|++.|+.+ ..+|++ ...........+...+.|.++++.++++|+.+.
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 149 (294)
T 3vni_A 84 KNAKAFYTDLLKRLYKLDVHLIGGA--LYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFC 149 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEES--TTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeeecc--ccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4567888889999999999999742 123332 111111223445566678888877777887654
No 72
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=31.32 E-value=1.5e+02 Score=29.76 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=28.9
Q ss_pred eEEEEEecCCC-------CCCHHHHHHHHHHHHHHHHHCCCeEEEc
Q 007749 4 LKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLG 42 (591)
Q Consensus 4 ~kVAl~Q~~~~-------~~d~~~N~~~i~~~i~~A~~~gadlvvf 42 (591)
+++..+...+. ..+.+..++.+.+.++.|++.|+++|++
T Consensus 69 L~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~ 114 (367)
T 1tz9_A 69 LALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCY 114 (367)
T ss_dssp CEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56665553332 2346778888899999999999999998
No 73
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=31.14 E-value=94 Score=29.71 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCC--CcCCCCCCcc----cc-cchhhHHHHHHHHHHHhcccCCCeEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPEL--EITGYGCEDH----FL-ELDTVTHAWECLKDLLLGDWTDGILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl--~ltGy~~~d~----~~-~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (591)
+..++.+.+.++.|++-|++.|+++.. +..|.....+ .. .....+...+.+.++++.++++|+.+.+
T Consensus 86 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 159 (301)
T 3cny_A 86 EKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVAY 159 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 456778888999999999999887642 1113321111 01 2233445566778887777778876543
No 74
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=30.58 E-value=1e+02 Score=31.73 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHHhCCCcEEEEecCC--cccccc--------------hhHHHHHHHHHHHHcCcEEEEEcC-CCCCCCceeeeccEEE
Q 007749 185 ADLALNGVEVFMNASGS--HHQLRK--------------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCV 247 (591)
Q Consensus 185 r~la~~Gadlil~psas--~~~~gk--------------~~~r~~l~~~~a~e~~~~~v~aN~-~G~~~~~~~f~G~S~I 247 (591)
+..+.+|||||+.|=.+ ++.+.. .......++..|.+++++++..-. .....++..| -.+++
T Consensus 106 ~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~y-Nsa~v 184 (405)
T 2vhh_A 106 KAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIW-NTAVV 184 (405)
T ss_dssp HHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHHHHHHHHHHTTCEEEEEEEEEETTTTTEEE-EEEEE
T ss_pred HHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHHHHHHHHHHCCEEEEEeceecccCCCCcEE-EEEEE
Confidence 34567899999999432 332110 112345677888899998875321 1111012333 34555
Q ss_pred E-eCCcEEEe
Q 007749 248 V-VNGDMIAQ 256 (591)
Q Consensus 248 ~-p~G~ila~ 256 (591)
+ |+|+++..
T Consensus 185 i~p~G~i~~~ 194 (405)
T 2vhh_A 185 ISNSGRYLGK 194 (405)
T ss_dssp ECTTSCEEEE
T ss_pred ECCCCeEEEE
Confidence 5 89998754
No 75
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=26.16 E-value=1.4e+02 Score=28.79 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=39.4
Q ss_pred HHHHhCCCcEEEEecCC--cccccc---------hhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eCCc
Q 007749 185 ADLALNGVEVFMNASGS--HHQLRK---------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGD 252 (591)
Q Consensus 185 r~la~~Gadlil~psas--~~~~gk---------~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~G~ 252 (591)
+..+.+|||+|+.|=.+ .|.... .....+.++..|.+++++++.-... ...++..| -.++++ |+|+
T Consensus 47 ~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~~~~y-Ns~~~i~~~G~ 124 (283)
T 3hkx_A 47 ARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPG-PEGPEQRG-ITAELADEHGE 124 (283)
T ss_dssp HHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEEECCBC-SSCTTTCC-BEEEEECTTSC
T ss_pred HHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEEEEEEE-EcCCCCEE-EEEEEEcCCCc
Confidence 34566899999999432 222211 0123455777888888887654321 11112223 345566 8999
Q ss_pred EEEe
Q 007749 253 MIAQ 256 (591)
Q Consensus 253 ila~ 256 (591)
++..
T Consensus 125 i~~~ 128 (283)
T 3hkx_A 125 VLAS 128 (283)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 76
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=26.08 E-value=77 Score=31.05 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcc---c------ccchhhHHHHHHHHHHHhcccCCCeEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDH---F------LELDTVTHAWECLKDLLLGDWTDGILCS 84 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~---~------~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (591)
+..++.+.+.++.|++-|++.|+++ +|....+. + ...+..+...+.+.++++.++++|+.+.
T Consensus 107 ~~~~~~~~~~i~~A~~lGa~~v~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 177 (340)
T 2zds_A 107 QRAAAEIKDTARAAARLGVDTVIGF----TGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFA 177 (340)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEC----CCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe----cCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4567788888999999999988874 33321110 0 0112233445567777776666787654
No 77
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=25.94 E-value=1.9e+02 Score=27.53 Aligned_cols=55 Identities=18% Similarity=0.070 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccC
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (591)
+..++.+.+.++.|++-|++.|+.| ..|+... .......+...+.+.++++.+++
T Consensus 109 ~~~~~~~~~~i~~A~~lG~~~v~~~---~~g~~~~--~~~~~~~~~~~~~l~~l~~~a~~ 163 (290)
T 2zvr_A 109 KKAIERVVKHTEVAGMFGALVIIGL---VRGRREG--RSYEETEELFIESMKRLLELTEH 163 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEESG---GGCCCTT--SCHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEec---CCCCCCC--cCHHHHHHHHHHHHHHHHHHhcc
Confidence 5667888999999999999999833 2455221 11223345566678888877654
No 78
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=25.67 E-value=94 Score=31.68 Aligned_cols=63 Identities=14% Similarity=-0.014 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc---ccccchhhHHHHHHHHHHHhcccCCC--eEEEE
Q 007749 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED---HFLELDTVTHAWECLKDLLLGDWTDG--ILCSF 85 (591)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d---~~~~~~~~~~~~~~l~~la~~~~~~~--i~iiv 85 (591)
+..++.+.+.++.|++-|++.|++. +|+...+ ........+...+.|.++++.++++| +.+.+
T Consensus 112 ~~~i~~~~~~i~~A~~LGa~~vvv~----~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~l 179 (394)
T 1xla_A 112 RFALAKVLHNIDLAAEMGAETFVMW----GGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRIAL 179 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC----CTTCEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC----CCCCccccccccCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5677889999999999999988762 3432100 01112234455667777777666677 66543
No 79
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=24.40 E-value=1.5e+02 Score=27.92 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=38.0
Q ss_pred HHHHhCCCcEEEEecC--Ccccccc------------hhHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-e
Q 007749 185 ADLALNGVEVFMNASG--SHHQLRK------------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-V 249 (591)
Q Consensus 185 r~la~~Gadlil~psa--s~~~~gk------------~~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p 249 (591)
+..+.+|||+|+.|=. +.|.... .....+.++..|.+++++++.--.. .. ++..| -.++++ |
T Consensus 28 ~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv~G~~~-~~-~~~~y-Ns~~~i~~ 104 (262)
T 3ivz_A 28 KEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGTAE-KD-GDVLY-NSAVVVGP 104 (262)
T ss_dssp HHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEEEEEEE-EE-TTEEE-EEEEEEET
T ss_pred HHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEEEeEEE-ee-CCcEE-EEEEEEcC
Confidence 3446789999999933 2222211 0123456777888889887653111 11 22333 345555 8
Q ss_pred CCcEEEe
Q 007749 250 NGDMIAQ 256 (591)
Q Consensus 250 ~G~ila~ 256 (591)
+| ++..
T Consensus 105 ~G-~~~~ 110 (262)
T 3ivz_A 105 RG-FIGK 110 (262)
T ss_dssp TE-EEEE
T ss_pred Ce-eEEE
Confidence 99 7653
No 80
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=22.87 E-value=1.2e+02 Score=28.91 Aligned_cols=69 Identities=7% Similarity=0.060 Sum_probs=38.2
Q ss_pred HHHhCCCcEEEEecCC--cccccch--------hHHHHHHHHHHHHcCcEEEEEcCCCCCCCceeeeccEEEE-eCCcEE
Q 007749 186 DLALNGVEVFMNASGS--HHQLRKL--------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMI 254 (591)
Q Consensus 186 ~la~~Gadlil~psas--~~~~gk~--------~~r~~l~~~~a~e~~~~~v~aN~~G~~~~~~~f~G~S~I~-p~G~il 254 (591)
..+.+|||+|+.|=.+ ++..... ......++..|.+++++++.-...-.. ++..| -.++++ |+|+++
T Consensus 30 ~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~-~~~~y-Ns~~~i~~~G~i~ 107 (276)
T 2w1v_A 30 EAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEED-AGKLY-NTCSVFGPDGSLL 107 (276)
T ss_dssp HHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEECCCEEEEE-TTEEE-EEEEEECTTSCEE
T ss_pred HHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEEecceeecC-CCcEE-EEEEEECCCCcEE
Confidence 4457899999999432 3322110 123455777888888877632110001 12233 345556 899987
Q ss_pred Ee
Q 007749 255 AQ 256 (591)
Q Consensus 255 a~ 256 (591)
..
T Consensus 108 ~~ 109 (276)
T 2w1v_A 108 VK 109 (276)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 81
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=22.33 E-value=1.4e+02 Score=27.95 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhccc-CCCeEEE
Q 007749 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW-TDGILCS 84 (591)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~-~~~i~ii 84 (591)
.+..++.+.+.++.|..-|+..|++. +|+. .+ +...+.+.++++.++ ++++.+.
T Consensus 83 r~~~~~~~~~~i~~a~~lGa~~vv~h----~g~~-~~--------~~~~~~l~~l~~~a~~~~gv~l~ 137 (270)
T 3aam_A 83 WEKSVASLADDLEKAALLGVEYVVVH----PGSG-RP--------ERVKEGALKALRLAGVRSRPVLL 137 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEC----CCBS-CH--------HHHHHHHHHHHHHHTCCSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC----CCCC-CH--------HHHHHHHHHHHHhhcccCCCEEE
Confidence 35567778888888888888887753 3443 11 344556666766655 5666544
No 82
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=21.05 E-value=68 Score=29.13 Aligned_cols=71 Identities=13% Similarity=-0.031 Sum_probs=34.7
Q ss_pred CCc--eEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccccchhhHHHHHHHHHHHhcccC
Q 007749 1 MRL--LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (591)
Q Consensus 1 m~~--~kVAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (591)
|+. |||+.+. -.-++.. .+.++++.+.+.++|+|++- +|+.......+...+.++.|.+. .
T Consensus 1 ~~~~~mri~~iS--D~H~~~~----~~~~~~~~~~~~~~D~vi~~---------GDl~~~~~~~~~~~~~~~~l~~~--~ 63 (228)
T 1uf3_A 1 MRRTVRYILATS--NPMGDLE----ALEKFVKLAPDTGADAIALI---------GNLMPKAAKSRDYAAFFRILSEA--H 63 (228)
T ss_dssp CCCCCCEEEEEE--CCTTCHH----HHHHHHTHHHHHTCSEEEEE---------SCSSCTTCCHHHHHHHHHHHGGG--C
T ss_pred CccceEEEEEEe--eccCCHH----HHHHHHHHHhhcCCCEEEEC---------CCCCCCCCCHHHHHHHHHHHHhc--C
Confidence 654 5665543 3344432 33344444445578887643 23322111122334456666543 2
Q ss_pred CCeEEEEcce
Q 007749 79 DGILCSFGMP 88 (591)
Q Consensus 79 ~~i~iivG~~ 88 (591)
..++++.|.-
T Consensus 64 ~pv~~v~GNH 73 (228)
T 1uf3_A 64 LPTAYVPGPQ 73 (228)
T ss_dssp SCEEEECCTT
T ss_pred CcEEEECCCC
Confidence 3577888864
Done!