RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007749
(591 letters)
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 79.7 bits (195), Expect = 5e-17
Identities = 44/301 (14%), Positives = 88/301 (29%), Gaps = 27/301 (8%)
Query: 2 RLLKVATCNLN--NWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL 59
R + +A A + + + + + +A GA + PEL +T + HF +
Sbjct: 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61
Query: 60 DTVTHAWECLKDLLLGDWTDGILCSFGMPV----------IKGSERYNCQVLCLNRKIIM 109
+ +E + G+ R+N +L I+
Sbjct: 62 AELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIV 121
Query: 110 -IRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTA 168
K+ L Y R F +++ V + +
Sbjct: 122 GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRW----- 176
Query: 169 VAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMY 228
E A++ G + + + A + G +
Sbjct: 177 -----PEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSA 231
Query: 229 SNHQGCDGGRLYFDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSF 287
+ + G SC+V G+++A + + E++ A VDLD R I +F
Sbjct: 232 AAGKAGMEENCMLLGHSCIVAPTGEIVALTTTL---EDEVITAAVDLDRCRELREHIFNF 288
Query: 288 Q 288
+
Sbjct: 289 K 289
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus
subtilis [TaxId: 1423]}
Length = 271
Score = 76.9 bits (188), Expect = 3e-16
Identities = 58/256 (22%), Positives = 101/256 (39%), Gaps = 55/256 (21%)
Query: 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQ 385
P++EI +L Y++++GA GF+L +SGG DS + G + QL V+ I
Sbjct: 17 DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDS----TLAGRLAQLAVESIR----- 66
Query: 386 VKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDV 445
E D++ A R+ + +++ + +
Sbjct: 67 --------------EEGGDAQFIAVRLPHGTQQDEDDAQLALKFI-------KPDKSWKF 105
Query: 446 SIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHN 505
I + VSAF +Q TG + G N++AR RM+ + +
Sbjct: 106 DIKSTVSAFSDQYQQETGDQLTDFNKG----------NVKARTRMIAQYAIG-------G 148
Query: 506 KPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAE 565
+ G VLG+ + E + G+ TKY AD+ P+ ++K+ RT L+
Sbjct: 149 QEGLL-VLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAP------ER 201
Query: 566 IEAAPPTAELEPIRSN 581
+ PTA+L +
Sbjct: 202 LYLKEPTADLLDEKPQ 217
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 262
Score = 73.9 bits (180), Expect = 3e-15
Identities = 55/282 (19%), Positives = 92/282 (32%), Gaps = 41/282 (14%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++KV + L+ D N ++ I A + GA + + PEL TGY E D
Sbjct: 1 MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVA 60
Query: 63 THAW--ECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
E L+ G+ G G+ YN V+ R I K+ L
Sbjct: 61 QQIPEGETTTFLMELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGYIGKYRKIHLFYRE 120
Query: 121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
+F ++ D V IC + F P
Sbjct: 121 K----VFFEPGDLGFKVFDIGFAK------------------------VGVMICFDWFFP 152
Query: 181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
AL G E+ + + IRA + + + ++ G + G
Sbjct: 153 ESARTL-ALKGAEIIAHPANLVMPYAPRAMPIRALENRVY-----TITADRVGEERGL-K 205
Query: 241 FDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281
F G S + ++++ S+ + EI V ++DL+ R
Sbjct: 206 FIGKSLIASPKAEVLSIASET---EEEIGVVEIDLNLARNKR 244
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 271
Score = 71.3 bits (173), Expect = 3e-14
Identities = 43/289 (14%), Positives = 81/289 (28%), Gaps = 29/289 (10%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT 63
+A C + + D + N + K I RA E + PE ++ ++L T
Sbjct: 6 HFIAVCQMTSDN-DLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMAT 64
Query: 64 HAWECLKDLLLGDWTDGILCSFGMPVI---KGSERYNCQVLCLNRKIIMIRPKLWLANDG 120
K L + L G+ + +N ++ + + D
Sbjct: 65 DCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDL 124
Query: 121 NYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTP 180
+ + + +P + + L + L P
Sbjct: 125 EIPG-KVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFP 183
Query: 181 IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240
+ L E + A +Q + + G +
Sbjct: 184 SAFTLNTGLAHWETLLRARAIENQCY-------------------VVAAAQTGAHNPKRQ 224
Query: 241 FDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288
G S VV G ++AQ S+ V++ A++DL V R F
Sbjct: 225 SYGHSMVVDPWGAVVAQCSE----RVDMCFAEIDLSYVDTLREMQPVFS 269
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 67.6 bits (164), Expect = 4e-13
Identities = 52/254 (20%), Positives = 88/254 (34%), Gaps = 59/254 (23%)
Query: 327 PEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKE--ISNGD 383
EEEI +L YL+ +L +SGG DS + G +CQ+ + E + G+
Sbjct: 18 AEEEIRRSVD-FLKSYLQTYPFIKSLVLGISGGQDS----TLAGKLCQMAINELRLETGN 72
Query: 384 EQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHL 443
E ++ A+R+ + + + +A L
Sbjct: 73 ESLQFIAVRLPY--------------------------GVQADEQDCQDAIAFIQPDRVL 106
Query: 444 DVSIDTVVSAFLSLFQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWV 503
V+I V A + + + N +AR RM + +A + V
Sbjct: 107 TVNIKGAVLASEQALREAGIELSDFVR-----------GNEKARERMKAQYSIAGMTSGV 155
Query: 504 HNKPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSL 563
G+ + E + G+ TKY DINP+ ++K+ + L A
Sbjct: 156 VV--------GTDHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYK- 206
Query: 564 AEIEAAPPTAELEP 577
PTA+LE
Sbjct: 207 -----KAPTADLED 215
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 63.7 bits (153), Expect = 8e-12
Identities = 42/291 (14%), Positives = 81/291 (27%), Gaps = 23/291 (7%)
Query: 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRA--KEAGAVIRLGPELEITGYGCEDHFLE 58
+ +KVA L+ + D NL+ I RA ++ + + PE + Y D F +
Sbjct: 7 SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYST-DQFRK 65
Query: 59 LDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAN 118
V + E + + + I KL +
Sbjct: 66 YSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKH 125
Query: 119 DGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELF 178
+ + E P
Sbjct: 126 RKVHLFDVDIPNGISFHESETLS--------------PGEKSTTIDTKYGKFGVGICYDM 171
Query: 179 TPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238
A G + S + L + + A A ++ V + S +
Sbjct: 172 RFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQSSY 231
Query: 239 LYFDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQ 288
+ G S VV G ++A+ + EI+ A++D + + FR ++ +
Sbjct: 232 -HAYGHSIVVDPRGKIVAEAGE----GEEIIYAELDPEVIESFRQAVPLTK 277
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
{Helicobacter pylori [TaxId: 210]}
Length = 255
Score = 57.3 bits (137), Expect = 9e-10
Identities = 52/247 (21%), Positives = 86/247 (34%), Gaps = 66/247 (26%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
+L +++ G + LSGG DS+ V + CQ V KE
Sbjct: 13 FLEKEVQKRGFKKVVYGLSGGLDSAVVGVL----CQKVFKE------------------- 49
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
+ + M S S E + A L ++ + + SI + F S
Sbjct: 50 --------------NAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSH 95
Query: 458 FQTLTGKRPCYKVDGGSNVENLGLQNIQARIRMVLAFMLASLLPWVHNKPGFYLVLGSSN 517
F+ + R AR+RM + ++ LV+G+SN
Sbjct: 96 FKDASLTRKGN---------------FCARLRMAFL--------YDYSLKSDSLVIGTSN 132
Query: 518 VDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSSLAEIEAAPPTAELEP 577
E + GY T + + INPIG + K ++ R +I PP+A+L
Sbjct: 133 KSERMLGYGTLFGDLACAINPIGELFKTEVYELARRLNIP------KKILNKPPSADLFV 186
Query: 578 IRSNYSQ 584
+S+
Sbjct: 187 GQSDEKD 193
>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 324
Score = 31.5 bits (70), Expect = 0.29
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 355 LSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFY 414
LSGG DSS ++AI + + + + E+ +A ++ +A G + + A+ +
Sbjct: 41 LSGGLDSSIISAI---TKKYAARRVED-QERSEAWWPQLHSFAVGLPGSPDLKAAQEVAN 96
Query: 415 TVFM 418
+
Sbjct: 97 HLGT 100
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO)
protein {Salmonella typhimurium [TaxId: 90371]}
Length = 238
Score = 28.5 bits (62), Expect = 1.9
Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 21/132 (15%)
Query: 142 LPNEISVALKQKSVPFGY----GFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMN 197
LP + + PF G D + E+C+ + V+
Sbjct: 2 LPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRM-------------QVKCTWV 48
Query: 198 ASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVVVNGDMIAQG 257
AS + L + I ++ S Q + S ++ Q
Sbjct: 49 ASDFDALIPSLKAKKIDAIISSLS----ITDKRQQEIAFSDKLYAADSRLIAAKGSPIQP 104
Query: 258 SQFSLKDVEIVV 269
+ SLK + V
Sbjct: 105 TLESLKGKHVGV 116
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 265
Score = 28.1 bits (62), Expect = 3.1
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Query: 186 DLALNGVEVF-MNAS-GSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDG 243
L G+ + MN S GS+ + + R R + D
Sbjct: 39 ALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPGRPLAIALDTKGPALSEKDKEDL 98
Query: 244 CSCVVVNGDMIAQGSQFSLKDVEIV 268
V M+ + DV +
Sbjct: 99 RFGVKNGVHMVFASFIRTANDVLTI 123
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.4 bits (59), Expect = 4.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 345 RSGASGFLLPLSGGADSSSVAAIVGCMC 372
+ G +L LSGG DSS A ++
Sbjct: 17 QVGDDKVILGLSGGVDSSVTAMLLHRAI 44
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 299
Score = 27.3 bits (59), Expect = 4.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 355 LSGGADSSSVAAIV 368
LSGG DSS VAA
Sbjct: 39 LSGGIDSSGVAACA 52
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 296
Score = 27.2 bits (59), Expect = 5.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 355 LSGGADSSSVAAI 367
LSGG DSS V A+
Sbjct: 40 LSGGLDSSLVTAL 52
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 27.2 bits (59), Expect = 6.0
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 172 EICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH 231
E E + +E+F + ++++ I +S G+ +
Sbjct: 179 EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPL 238
Query: 232 ---QGCDGGRLYFDGCSCVVVNGDMIAQGSQF 260
+ YF + +V GD+ +F
Sbjct: 239 FFSEPLPPLFSYFPANTLLVNTGDLETSAERF 270
>d1dq3a4 d.95.2.2 (A:227-335) PI-Pfui intein {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 109
Score = 25.7 bits (56), Expect = 7.4
Identities = 9/56 (16%), Positives = 15/56 (26%)
Query: 507 PGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKQDLRTFLRWAATHLGYSS 562
P L G + V + G S + + L + LG +
Sbjct: 2 PPQILKEGKNAVLSFIAGLFDAEGHVSNKPGIELGMVNKRLIEDVTHYLNALGIKA 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.425
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,286,686
Number of extensions: 108254
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 15
Length of query: 591
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 501
Effective length of database: 1,171,896
Effective search space: 587119896
Effective search space used: 587119896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.0 bits)