Query 007752
Match_columns 591
No_of_seqs 403 out of 2160
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:51:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03788 marine_srt_targ mari 100.0 1.8E-71 3.9E-76 620.1 62.0 485 86-589 2-529 (596)
2 PF13768 VWA_3: von Willebrand 99.9 2.8E-25 6.1E-30 206.1 17.4 153 326-485 1-155 (155)
3 cd01461 vWA_interalpha_trypsin 99.9 1.6E-24 3.5E-29 204.0 20.4 170 324-497 1-170 (171)
4 cd01463 vWA_VGCC_like VWA Volt 99.9 1.5E-23 3.2E-28 201.4 19.8 165 323-489 11-189 (190)
5 PF08487 VIT: Vault protein in 99.9 8.4E-24 1.8E-28 186.1 15.1 111 81-197 2-118 (118)
6 smart00609 VIT Vault protein I 99.9 2.6E-23 5.7E-28 184.5 14.6 113 79-197 12-130 (130)
7 cd01466 vWA_C3HC4_type VWA C3H 99.9 3.8E-22 8.3E-27 185.0 18.6 153 326-487 1-155 (155)
8 cd01465 vWA_subgroup VWA subgr 99.9 5.4E-22 1.2E-26 186.7 18.6 166 327-495 2-169 (170)
9 cd01456 vWA_ywmD_type VWA ywmD 99.9 6E-21 1.3E-25 185.6 18.7 166 322-489 17-203 (206)
10 cd01470 vWA_complement_factors 99.9 3.7E-21 8E-26 185.9 16.7 168 327-495 2-196 (198)
11 PRK13685 hypothetical protein; 99.8 5.8E-19 1.3E-23 183.4 21.5 170 324-502 87-289 (326)
12 TIGR00868 hCaCC calcium-activa 99.8 6.8E-19 1.5E-23 197.9 22.2 162 322-492 301-466 (863)
13 cd01451 vWA_Magnesium_chelatas 99.8 1.2E-18 2.5E-23 165.6 17.9 156 328-491 3-169 (178)
14 cd01480 vWA_collagen_alpha_1-V 99.8 4.7E-19 1E-23 169.5 14.6 160 324-491 1-174 (186)
15 cd01467 vWA_BatA_type VWA BatA 99.8 3.8E-18 8.2E-23 162.2 20.2 162 325-492 2-180 (180)
16 cd01453 vWA_transcription_fact 99.8 3.9E-18 8.4E-23 162.3 17.8 161 326-497 4-176 (183)
17 cd01464 vWA_subfamily VWA subf 99.8 1.9E-18 4.1E-23 163.8 15.0 141 325-477 3-159 (176)
18 cd01472 vWA_collagen von Wille 99.8 9.1E-18 2E-22 157.2 18.7 152 326-487 1-161 (164)
19 cd01474 vWA_ATR ATR (Anthrax T 99.8 9.2E-18 2E-22 160.4 18.4 174 324-505 3-183 (185)
20 TIGR02921 PEP_integral PEP-CTE 99.8 1.6E-17 3.4E-22 172.6 20.6 102 80-186 412-522 (952)
21 PF13519 VWA_2: von Willebrand 99.8 6.3E-18 1.4E-22 158.5 16.3 163 327-498 1-171 (172)
22 TIGR03436 acidobact_VWFA VWFA- 99.8 3.7E-17 7.9E-22 168.1 21.1 173 324-506 52-257 (296)
23 cd01471 vWA_micronemal_protein 99.8 3.1E-17 6.6E-22 156.9 17.6 150 326-479 1-161 (186)
24 cd01475 vWA_Matrilin VWA_Matri 99.7 5E-17 1.1E-21 160.1 17.9 171 325-505 2-185 (224)
25 cd01477 vWA_F09G8-8_type VWA F 99.7 1.2E-16 2.6E-21 152.9 18.5 158 323-484 17-190 (193)
26 cd01469 vWA_integrins_alpha_su 99.7 1.5E-16 3.2E-21 150.9 17.9 159 327-492 2-174 (177)
27 PTZ00441 sporozoite surface pr 99.7 5.5E-16 1.2E-20 165.9 20.7 182 324-509 41-236 (576)
28 cd01482 vWA_collagen_alphaI-XI 99.7 3.3E-16 7.2E-21 146.6 16.7 148 327-484 2-158 (164)
29 cd01462 VWA_YIEM_type VWA YIEM 99.7 3.4E-16 7.4E-21 144.6 16.5 145 326-478 1-147 (152)
30 cd01454 vWA_norD_type norD typ 99.7 2.3E-16 5E-21 149.2 15.3 148 327-475 2-165 (174)
31 cd01450 vWFA_subfamily_ECM Von 99.7 5.5E-16 1.2E-20 143.8 16.9 149 327-483 2-159 (161)
32 PRK13406 bchD magnesium chelat 99.7 7.9E-16 1.7E-20 169.4 18.8 163 322-490 398-571 (584)
33 cd01473 vWA_CTRP CTRP for CS 99.7 4.5E-15 9.7E-20 142.4 20.4 173 327-504 2-191 (192)
34 PF00092 VWA: von Willebrand f 99.7 1.4E-15 3.1E-20 143.6 15.2 166 327-498 1-177 (178)
35 cd01476 VWA_integrin_invertebr 99.7 3.5E-15 7.7E-20 139.4 17.6 146 327-481 2-159 (163)
36 cd01455 vWA_F11C1-5a_type Von 99.6 1.3E-14 2.8E-19 135.9 18.1 168 326-502 1-188 (191)
37 smart00327 VWA von Willebrand 99.6 1.3E-14 2.7E-19 136.7 18.1 154 325-485 1-164 (177)
38 COG1240 ChlD Mg-chelatase subu 99.6 5.9E-15 1.3E-19 142.0 15.6 165 323-492 76-250 (261)
39 TIGR02031 BchD-ChlD magnesium 99.6 1.1E-14 2.5E-19 161.8 18.7 163 323-490 405-584 (589)
40 cd00198 vWFA Von Willebrand fa 99.6 8.1E-14 1.7E-18 128.1 17.8 149 326-479 1-155 (161)
41 PF13757 VIT_2: Vault protein 99.6 1.6E-14 3.5E-19 114.5 10.7 70 79-153 9-78 (78)
42 cd01481 vWA_collagen_alpha3-VI 99.6 1.5E-13 3.4E-18 128.5 17.3 145 326-480 1-157 (165)
43 COG4245 TerY Uncharacterized p 99.6 7.9E-14 1.7E-18 126.8 14.1 140 327-478 5-161 (207)
44 cd01457 vWA_ORF176_type VWA OR 99.5 1.3E-13 2.8E-18 133.3 15.5 147 325-478 2-165 (199)
45 KOG2353 L-type voltage-depende 99.5 8.1E-14 1.7E-18 160.1 15.4 185 321-510 221-419 (1104)
46 TIGR02442 Cob-chelat-sub cobal 99.5 3E-13 6.6E-18 152.1 18.7 159 323-486 463-632 (633)
47 cd01452 VWA_26S_proteasome_sub 99.4 4.2E-11 9.2E-16 113.1 17.9 155 327-490 5-176 (187)
48 PF10138 vWA-TerF-like: vWA fo 99.3 9.7E-11 2.1E-15 110.4 17.0 158 327-493 3-175 (200)
49 PRK10997 yieM hypothetical pro 99.2 1.7E-10 3.7E-15 123.3 17.0 144 322-473 320-465 (487)
50 COG2425 Uncharacterized protei 99.2 5.2E-11 1.1E-15 124.8 12.1 146 326-479 273-419 (437)
51 cd01460 vWA_midasin VWA_Midasi 99.2 4.2E-10 9E-15 112.1 17.9 170 324-502 59-258 (266)
52 cd01458 vWA_ku Ku70/Ku80 N-ter 99.1 2.9E-09 6.3E-14 104.4 16.1 140 327-467 3-174 (218)
53 PF11775 CobT_C: Cobalamin bio 99.1 2.7E-09 5.8E-14 101.3 13.8 171 324-503 11-216 (219)
54 PF05762 VWA_CoxE: VWA domain 98.9 4.7E-08 1E-12 96.0 14.4 129 323-462 55-186 (222)
55 TIGR01651 CobT cobaltochelatas 98.8 4.7E-08 1E-12 105.2 11.7 171 324-503 391-596 (600)
56 PF04056 Ssl1: Ssl1-like; Int 98.7 4.7E-07 1E-11 85.6 15.5 165 331-507 1-176 (193)
57 COG4867 Uncharacterized protei 98.6 1.1E-06 2.4E-11 89.5 15.8 159 323-497 461-643 (652)
58 PF09967 DUF2201: VWA-like dom 98.6 2.8E-07 6E-12 82.0 9.7 96 328-436 1-96 (126)
59 COG4548 NorD Nitric oxide redu 98.6 2.2E-07 4.8E-12 97.4 9.4 177 324-504 445-636 (637)
60 COG2304 Uncharacterized protei 98.5 6.3E-06 1.4E-10 88.3 17.6 169 322-493 34-205 (399)
61 KOG3768 DEAD box RNA helicase 98.4 2.6E-06 5.5E-11 90.0 12.2 173 328-508 4-233 (888)
62 PRK05325 hypothetical protein; 98.3 7.9E-06 1.7E-10 85.4 14.2 161 326-502 223-396 (401)
63 cd01468 trunk_domain trunk dom 98.3 4.4E-05 9.4E-10 76.0 17.5 162 324-489 2-224 (239)
64 cd01459 vWA_copine_like VWA Co 98.3 3.2E-05 6.9E-10 76.9 16.0 148 325-477 31-206 (254)
65 KOG2807 RNA polymerase II tran 98.2 2.1E-05 4.6E-10 77.8 13.7 169 324-507 59-239 (378)
66 PF04811 Sec23_trunk: Sec23/Se 98.2 4.9E-05 1.1E-09 75.8 15.7 163 324-490 2-227 (243)
67 TIGR02877 spore_yhbH sporulati 98.2 3.8E-05 8.3E-10 79.0 14.2 157 325-499 202-370 (371)
68 COG4547 CobT Cobalamin biosynt 98.1 1.8E-05 3.9E-10 81.7 10.8 166 326-502 414-616 (620)
69 cd01479 Sec24-like Sec24-like: 98.1 0.00013 2.7E-09 72.8 16.6 158 324-487 2-219 (244)
70 PF04285 DUF444: Protein of un 98.1 5E-05 1.1E-09 80.1 14.0 161 326-502 247-418 (421)
71 cd01478 Sec23-like Sec23-like: 97.9 0.00098 2.1E-08 67.2 17.9 164 324-490 2-257 (267)
72 PF06707 DUF1194: Protein of u 97.8 0.002 4.2E-08 61.5 17.6 170 325-498 3-196 (205)
73 PF11443 DUF2828: Domain of un 97.7 0.00011 2.4E-09 79.8 9.3 104 326-435 341-449 (534)
74 PLN00162 transport protein sec 97.6 0.0032 6.8E-08 72.8 19.8 176 322-501 121-391 (761)
75 COG3552 CoxE Protein containin 97.5 0.00032 6.9E-09 71.4 8.6 107 323-437 216-326 (395)
76 smart00187 INB Integrin beta s 97.4 0.0084 1.8E-07 63.2 18.0 187 308-506 87-341 (423)
77 KOG1327 Copine [Signal transdu 97.4 0.0035 7.6E-08 67.5 14.6 150 324-478 284-464 (529)
78 PTZ00395 Sec24-related protein 97.4 0.018 3.9E-07 67.7 20.9 226 321-549 948-1260(1560)
79 PF03731 Ku_N: Ku70/Ku80 N-ter 97.3 0.0011 2.4E-08 65.2 9.5 106 328-434 2-140 (224)
80 KOG1985 Vesicle coat complex C 97.3 0.008 1.7E-07 67.0 16.7 179 308-489 277-511 (887)
81 TIGR00627 tfb4 transcription f 97.2 0.015 3.2E-07 58.7 15.7 168 326-495 3-216 (279)
82 PF07002 Copine: Copine; Inte 97.1 0.0076 1.6E-07 54.9 11.8 120 341-464 11-146 (146)
83 KOG2884 26S proteasome regulat 97.1 0.038 8.1E-07 52.4 16.1 132 326-468 4-149 (259)
84 COG5151 SSL1 RNA polymerase II 97.0 0.0084 1.8E-07 59.3 11.7 169 324-507 86-270 (421)
85 COG2718 Uncharacterized conser 97.0 0.011 2.5E-07 60.5 13.1 159 328-502 249-417 (423)
86 KOG1984 Vesicle coat complex C 96.7 0.14 2.9E-06 57.9 19.7 223 322-550 414-712 (1007)
87 PF03850 Tfb4: Transcription f 96.6 0.15 3.2E-06 51.6 17.9 169 326-496 2-215 (276)
88 TIGR00578 ku70 ATP-dependent D 96.5 0.051 1.1E-06 61.1 14.9 138 326-464 11-182 (584)
89 COG5148 RPN10 26S proteasome r 96.4 0.18 3.9E-06 46.7 14.9 141 326-475 4-156 (243)
90 COG3864 Uncharacterized protei 96.0 0.022 4.7E-07 56.8 7.4 93 327-436 263-356 (396)
91 PF11265 Med25_VWA: Mediator c 95.7 0.12 2.5E-06 50.3 10.9 111 323-434 11-150 (226)
92 COG5028 Vesicle coat complex C 95.6 4.8 0.0001 45.5 24.0 173 312-488 263-486 (861)
93 KOG4465 Uncharacterized conser 95.4 0.088 1.9E-06 53.4 9.3 135 321-464 423-562 (598)
94 PF14415 DUF4424: Domain of un 95.4 0.63 1.4E-05 46.4 15.2 48 101-151 2-67 (253)
95 COG5242 TFB4 RNA polymerase II 94.9 2.6 5.7E-05 40.3 16.8 146 343-492 43-218 (296)
96 COG1721 Uncharacterized conser 94.2 0.41 8.8E-06 51.7 11.6 104 325-434 224-334 (416)
97 KOG1986 Vesicle coat complex C 93.0 11 0.00024 42.3 19.6 174 324-501 120-378 (745)
98 PF00362 Integrin_beta: Integr 92.1 0.46 1E-05 51.2 7.8 188 308-507 90-345 (426)
99 KOG2487 RNA polymerase II tran 89.8 11 0.00023 37.4 13.8 165 324-492 22-231 (314)
100 COG5271 MDN1 AAA ATPase contai 83.7 12 0.00026 46.6 12.2 121 326-450 4393-4523(4600)
101 KOG1226 Integrin beta subunit 83.2 4.1 9E-05 46.0 8.1 62 306-372 118-181 (783)
102 KOG2326 DNA-binding subunit of 70.4 73 0.0016 35.4 12.7 134 326-464 5-165 (669)
103 PF06415 iPGM_N: BPG-independe 65.9 50 0.0011 32.3 9.6 60 407-467 14-74 (223)
104 COG5047 SEC23 Vesicle coat com 58.6 28 0.0006 38.4 6.9 50 323-374 120-169 (755)
105 PF04597 Ribophorin_I: Ribopho 54.0 1.1E+02 0.0025 33.1 11.0 83 99-197 17-103 (432)
106 PF01882 DUF58: Protein of unk 48.1 23 0.00049 28.6 3.5 40 325-364 40-85 (86)
107 PRK05434 phosphoglyceromutase; 40.4 1.9E+02 0.0042 32.0 10.1 62 406-468 95-157 (507)
108 KOG1924 RhoA GTPase effector D 39.4 42 0.00091 38.3 4.7 9 31-39 545-553 (1102)
109 KOG2291 Oligosaccharyltransfer 35.0 1.9E+02 0.0041 31.9 8.6 84 99-196 46-132 (602)
110 cd02004 TPP_BZL_OCoD_HPCL Thia 31.8 3.2E+02 0.0069 25.1 9.0 41 472-513 131-171 (172)
111 TIGR01307 pgm_bpd_ind 2,3-bisp 29.8 4.1E+02 0.0088 29.5 10.4 62 406-468 91-153 (501)
112 COG3364 Zn-ribbon containing p 29.0 58 0.0013 27.4 2.9 38 170-214 66-103 (112)
113 PF08496 Peptidase_S49_N: Pept 29.0 1.2E+02 0.0026 27.9 5.3 43 325-367 96-138 (155)
114 KOG0070 GTP-binding ADP-ribosy 27.7 67 0.0014 30.3 3.4 84 326-417 86-178 (181)
115 PF12690 BsuPI: Intracellular 27.3 1.8E+02 0.0039 23.5 5.5 76 102-208 2-80 (82)
116 PF10633 NPCBM_assoc: NPCBM-as 26.7 1.2E+02 0.0026 23.9 4.4 32 180-211 43-74 (78)
117 PF15417 DUF4624: Domain of un 25.3 4.4E+02 0.0096 22.7 7.8 90 100-194 16-107 (132)
118 PF01690 PLRV_ORF5: Potato lea 25.3 7.2E+02 0.016 27.1 10.9 50 101-155 73-122 (465)
119 KOG0071 GTP-binding ADP-ribosy 24.9 1.2E+02 0.0027 27.4 4.3 29 325-356 85-113 (180)
120 PF00733 Asn_synthase: Asparag 23.9 2.9E+02 0.0063 26.6 7.6 95 405-507 2-99 (255)
121 PLN02538 2,3-bisphosphoglycera 21.8 8.2E+02 0.018 27.5 10.9 59 407-468 115-174 (558)
122 PF07705 CARDB: CARDB; InterP 20.4 1.6E+02 0.0034 23.9 4.1 30 178-210 52-81 (101)
No 1
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=100.00 E-value=1.8e-71 Score=620.07 Aligned_cols=485 Identities=22% Similarity=0.359 Sum_probs=401.5
Q ss_pred ceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehhhhhhhhhhccc-
Q 007752 86 MHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKS- 164 (591)
Q Consensus 86 ~~~v~v~v~~~i~~a~v~~~~~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~~~~~~~- 164 (591)
+++|+++|.|.+ |+|+++|+|.| ++++++||.|+||||++|+|++|+|+||||+|+|+|+||++|++.|+.+++
T Consensus 2 ~~~v~~~V~g~~--A~v~v~q~f~N---~~~~~~E~~y~fPLp~~aaV~~f~~~i~~r~i~g~v~eKe~A~~~Ye~a~~~ 76 (596)
T TIGR03788 2 DTDANITVTGLI--ARTEVTQTFRN---PSQFWVEGRYVFPLPENAAVDSLTMHIGERVIVGQIMPKAAARAIYEQAKAE 76 (596)
T ss_pred CceEEEEEEcce--EEEEEEEEEEC---CCCCcEEEEEEeeCCCCcEEEEEEEEECCEEEEEEEeeHHHHHHHHHHHHHh
Confidence 467899999985 67999999999 789999999999999999999999999999999999999999976655554
Q ss_pred cCCccce---ecCceEEEccCCCCCCEEEEEEEEEEeeecccCeEEEEEeeeC-ceeecCCCC----------------C
Q 007752 165 KGDGRYL---KGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTF-PAYVIPLGR----------------K 224 (591)
Q Consensus 165 ~~~~~ll---~~~~F~~~v~~i~~~~~v~v~i~y~q~L~~~~g~~~~~lp~~~-P~~v~P~~~----------------~ 224 (591)
+++++|+ ++|+|+++|||||||++++|+|+|.|+|.+++|.|++++|+++ |+|..+... .
T Consensus 77 G~~a~Lleq~~~~~F~~~V~nIpp~~~v~i~l~Y~q~L~~~~g~~~~~lP~~~~pry~~~~~~~~~~~~~~~~~~~~~~~ 156 (596)
T TIGR03788 77 GKKAALVEQQRPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSLRLPLTVTPRYIPGSTVNTVTDVNNSGWAIPTTQ 156 (596)
T ss_pred ccceeeeecccCCceeEEeeccCCCCEEEEEEEEEEEeeecCCEEEEEeeeeecCCccCCcccccccccccccccccccc
Confidence 5667787 7999999999999999999999999999999999998888775 655421100 0
Q ss_pred C-------------------CCcceEEEEEEcCCceeeeecCCCcceeeeecccceEEEeecccccccCCCccEEEEEec
Q 007752 225 I-------------------PKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVA 285 (591)
Q Consensus 225 ~-------------------~~~~~i~~~v~~~~~~~i~~~s~sh~l~~~~~~~~~~~~~~~~~~~~~~~~df~l~~~~~ 285 (591)
. ....+++++++.+... ..+.|++|+++..+...+...++++.. ..++++||+|.|.+.
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~i-~~i~s~~h~i~~~~~~~~~~~v~l~~~-~~~~d~Df~l~~~~~ 234 (596)
T TIGR03788 157 VPDADKISAPRVLDPDDDAPSSQASINVDLNAGLPL-DSITSPSHPIQIEQQGQSGYTISLAQG-QVIADRDFVLTWRPA 234 (596)
T ss_pred cccccccCCccccCcccCCCCcceEEEEEecCCCcc-ceeeCCCCceEeecCCCceEEEEeCCC-CcCCCCCEEEEEEeC
Confidence 0 0123444555544432 257899999988776655555555542 368999999999997
Q ss_pred cCCCccceEeeCCCCCCCCCcceEEEEEecCCC-CCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEE
Q 007752 286 STDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKS-QSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFN 364 (591)
Q Consensus 286 ~~~~~~~v~~~~~~~~~~d~~~~f~~~~~P~~~-~~~~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ 364 (591)
..+.. ..++.. +..++.+||++++.|+.. ......|++++||||+||||.|.+++.+|+++..++..|+++|+|+
T Consensus 235 ~~~~p-~~~~~~---~~~~~~~y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ 310 (596)
T TIGR03788 235 QGEAP-SAALFR---EQIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFN 310 (596)
T ss_pred CCCCc-eEEEEE---EccCCCcEEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEE
Confidence 65533 322221 112455789888888763 3345789999999999999999999999999999999999999999
Q ss_pred EEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhhcC-CCCccEEEEEecCCCCChhhHHHH
Q 007752 365 IIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDT-SESIPLIFLITDGTVGDERGICNE 443 (591)
Q Consensus 365 Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~l~~~-~~~~~~IillTDG~~~~~~~~~~~ 443 (591)
|+.|++++..+.+.....+..+++.+.++|+.+.++|||+++.||+.|++..... .+..+.|||||||..+++..+.+.
T Consensus 311 ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~ 390 (596)
T TIGR03788 311 IIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGNEDALFQL 390 (596)
T ss_pred EEEECCcceEeccccccCCHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCCHHHHHHH
Confidence 9999999998877777889999999999999999999999999999999874322 345678999999998877767666
Q ss_pred HHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEeeEEEEecCCCccee
Q 007752 444 IKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLE 523 (591)
Q Consensus 444 v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~~p~~~~i~l~~~~~~~~~~ 523 (591)
++... .+.+||+||||+++|..+|+.||+.|+|.|+++.+.+++..++.+++.++.+|+++|+.++|.. ....+
T Consensus 391 ~~~~~-----~~~ri~tvGiG~~~n~~lL~~lA~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~-~~~~~ 464 (596)
T TIGR03788 391 IRTKL-----GDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDN-GNAAD 464 (596)
T ss_pred HHHhc-----CCceEEEEEeCCCcCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcC-Cccce
Confidence 65431 2479999999999999999999999999999999999999999999999999999999999953 45679
Q ss_pred eeCCCCCCcCCCCeEEEEEEEeCCCCceEEEEEEeCCcceEEEEEEcccC-CCCCHhHHHHHHHHHh
Q 007752 524 LFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNA-KDIPLDRKVKSLKRRL 589 (591)
Q Consensus 524 v~p~~ip~l~~g~~l~v~g~~~g~~~~~v~l~g~~~~~~~~~~~l~~~~~-~~~~l~rl~A~~~~~~ 589 (591)
++|..+|+||.|++++|+||+ +..+++++|+|..+++ .|+.++++... .+..+|||||+.+.+.
T Consensus 465 v~P~~~p~L~~g~~l~v~g~~-~~~~~~i~v~g~~~~~-~~~~~~~~~~~~~~~~l~~lwA~~~I~~ 529 (596)
T TIGR03788 465 VYPSPIPDLYRGEPLQIAIKL-QQAAGELQLTGRTGSQ-PWSQQLDLDSAAPGKGIDKLWARRKIDS 529 (596)
T ss_pred eccCCCccccCCCEEEEEEEe-cCCCCeEEEEEEcCCc-eEEEEEecCCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999996 4568899999999988 59999988743 4577999999988764
No 2
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.93 E-value=2.8e-25 Score=206.10 Aligned_cols=153 Identities=39% Similarity=0.547 Sum_probs=136.3
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC-CCCCc
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GGGTN 404 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a-~GgT~ 404 (591)
.+++||||+|+||.|.+ +.+|+++..++++|+++|+|+|+.|++++..|.+...+++.++++++.+||+.+.+ .|+|+
T Consensus 1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t~ 79 (155)
T PF13768_consen 1 ADVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLEANSGGTD 79 (155)
T ss_pred CeEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCcc
Confidence 37999999999999988 99999999999999999999999999999988888888999999999999999999 79999
Q ss_pred hHHHHHHHHHHhhcCCCCccEEEEEecCCC-CChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007752 405 ILLPLKQAIKLLSDTSESIPLIFLITDGTV-GDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (591)
Q Consensus 405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~-~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~ 483 (591)
+..||+.|+..+ ..++..+.|||+|||.+ +.+..+++.+++. ...++||+||+|..++..+|+.||+.++|.|
T Consensus 80 l~~aL~~a~~~~-~~~~~~~~IilltDG~~~~~~~~i~~~v~~~-----~~~~~i~~~~~g~~~~~~~L~~LA~~~~G~~ 153 (155)
T PF13768_consen 80 LLAALRAALALL-QRPGCVRAIILLTDGQPVSGEEEILDLVRRA-----RGHIRIFTFGIGSDADADFLRELARATGGSF 153 (155)
T ss_pred HHHHHHHHHHhc-ccCCCccEEEEEEeccCCCCHHHHHHHHHhc-----CCCceEEEEEECChhHHHHHHHHHHcCCCEE
Confidence 999999999876 33567889999999996 4455566665543 2459999999999999999999999999998
Q ss_pred EE
Q 007752 484 DS 485 (591)
Q Consensus 484 ~~ 485 (591)
.+
T Consensus 154 ~f 155 (155)
T PF13768_consen 154 HF 155 (155)
T ss_pred EC
Confidence 74
No 3
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.93 E-value=1.6e-24 Score=203.99 Aligned_cols=170 Identities=39% Similarity=0.598 Sum_probs=148.0
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCC
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT 403 (591)
.|++++||||+||||.+.+++.+++++..++..++++++|+|+.|+++...+.+.....+..++.++.++++.+.++|+|
T Consensus 1 ~~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T 80 (171)
T cd01461 1 LPKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGT 80 (171)
T ss_pred CCceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCc
Confidence 47899999999999999999999999999999999999999999999987765544456778888999999999999999
Q ss_pred chHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007752 404 NILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (591)
Q Consensus 404 ~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~ 483 (591)
++..||..|++.+...++..+.||++|||..++...+.+.+++.. ..+++||+||+|.+.+..+|+.||+.++|.|
T Consensus 81 ~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~ 156 (171)
T cd01461 81 NMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILKNVREAL----SGRIRLFTFGIGSDVNTYLLERLAREGRGIA 156 (171)
T ss_pred CHHHHHHHHHHhhccCCCCccEEEEEeCCCCCCHHHHHHHHHHhc----CCCceEEEEEeCCccCHHHHHHHHHcCCCeE
Confidence 999999999999876456678999999999877666656555442 2368999999999999999999999999999
Q ss_pred EEcCCCCchHHHHH
Q 007752 484 DSAYDPGSVDYRIR 497 (591)
Q Consensus 484 ~~v~~~~~l~~~l~ 497 (591)
.++.+.+++.+++.
T Consensus 157 ~~~~~~~~~~~~~~ 170 (171)
T cd01461 157 RRIYETDDIESQLL 170 (171)
T ss_pred EEecChHHHHHHhc
Confidence 99999998887664
No 4
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.91 E-value=1.5e-23 Score=201.37 Aligned_cols=165 Identities=30% Similarity=0.367 Sum_probs=136.5
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecc----cccCCHHHHHHHHHHHhcCC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS----MKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~----~~~~~~~~~~~a~~~i~~l~ 398 (591)
..|++++||||+||||.+.+++.+|+++..+++.|+++|+|+|+.|++++..+.+. ....+..+.+.+.++|+.+.
T Consensus 11 ~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 90 (190)
T cd01463 11 TSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALDMLE 90 (190)
T ss_pred cCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHhhCC
Confidence 46899999999999999999999999999999999999999999999998876542 12345668888999999999
Q ss_pred CCCCCchHHHHHHHHHHhhcC---------CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC-C
Q 007752 399 AGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC-N 468 (591)
Q Consensus 399 a~GgT~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~-~ 468 (591)
++|+|++..||+.|++.+... +...+.|||||||.+++...+....... .....+++||+||+|.+. |
T Consensus 91 ~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~--~~~~~~v~i~tigiG~~~~d 168 (190)
T cd01463 91 AKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWD--KNSEIPVRVFTYLIGREVTD 168 (190)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhccc--ccCCCcEEEEEEecCCcccc
Confidence 999999999999999988751 1335689999999988765544332211 112346899999999986 8
Q ss_pred HHHHHHHHHhCCCEEEEcCCC
Q 007752 469 HYFLQILAQIGRGYYDSAYDP 489 (591)
Q Consensus 469 ~~lL~~LA~~~~G~~~~v~~~ 489 (591)
..+|+.||..++|.|+++.+.
T Consensus 169 ~~~L~~lA~~~~G~~~~i~~~ 189 (190)
T cd01463 169 RREIQWMACENKGYYSHIQSL 189 (190)
T ss_pred chHHHHHHhhcCCeEEEcccC
Confidence 999999999999999998874
No 5
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=99.91 E-value=8.4e-24 Score=186.11 Aligned_cols=111 Identities=14% Similarity=0.272 Sum_probs=99.1
Q ss_pred cccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehhhhhhhhh
Q 007752 81 LIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKEN 160 (591)
Q Consensus 81 ~~pL~~~~v~v~v~~~i~~a~v~~~~~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~~~ 160 (591)
.+||++.+|+++|.+.+ |+|+++|+|.| +++.++|+.|.||||++|+|++|+|+||||+|.|+|++|++|++.|+
T Consensus 2 ~~~l~s~~v~~~I~~~~--a~t~v~q~f~N---~~~~~~E~~y~fpLp~~A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~ 76 (118)
T PF08487_consen 2 QVPLKSVHVKVTIIDRF--ARTTVTQTFEN---PSSEPLEAVYSFPLPEGAAISGFSMWIGGRTIEGEVKEKEEAKQEYE 76 (118)
T ss_pred CceEEEEEEEEEEEccE--EEEEEEEEEEC---CCCCcEEEEEEeECCCCeEEEEEEEEECCEEEEEEEecHHHHHHHHH
Confidence 47899888888888874 67999999999 68899999999999999999999999999999999999999997665
Q ss_pred hcc-ccCCccce---ecCc--eEEEccCCCCCCEEEEEEEEEE
Q 007752 161 VGK-SKGDGRYL---KGQI--YTLRIPQVDGGSTLSIKVNWSQ 197 (591)
Q Consensus 161 ~~~-~~~~~~ll---~~~~--F~~~v~~i~~~~~v~v~i~y~q 197 (591)
.++ ++.+++|| +++. |+++| |||||++++|+|+|+|
T Consensus 77 ~a~~~g~~a~lle~~~~~~~~F~~~v-ni~p~~~v~i~l~Y~e 118 (118)
T PF08487_consen 77 EAVAQGKSAALLEQSDPNVEVFTVSV-NIPPNEEVTIELTYVE 118 (118)
T ss_pred HHHHcCCCchhhcccCCCCcEEEEEE-EeCCCCEEEEEEEEEC
Confidence 554 46677787 5677 99999 9999999999999985
No 6
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=99.90 E-value=2.6e-23 Score=184.51 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=101.2
Q ss_pred CccccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehhhhhhh
Q 007752 79 PALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYK 158 (591)
Q Consensus 79 ~~~~pL~~~~v~v~v~~~i~~a~v~~~~~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~ 158 (591)
...+||++.+|+++|.|.+ |+|+++|+|.| +++...|+.|.||||++|+|++|+|+||||+|.|+|+||++|++.
T Consensus 12 ~~~~pL~s~~v~~~I~~~~--a~t~vtq~f~N---~~~~~~e~~~~~~lp~~A~v~~~~~~i~~r~i~g~vkeK~~Ar~~ 86 (130)
T smart00609 12 VNGVPLYSLKVNSKVTSRF--AHTVVTSRVVN---RAVPAQEVTFDVELPKTAFISNFAMTIDGKTYVGEIKEKEVAQKQ 86 (130)
T ss_pred CCccceEEEEEEEEEECCE--EEEEEEEEEEC---CCCCceEEEEEcCCCCCcEEEeEEEEECCEEEEEEEeeHHHHHHH
Confidence 4579999999999998884 67999999999 578889999999999999999999999999999999999999986
Q ss_pred hhhc-cccCCccce---ec--CceEEEccCCCCCCEEEEEEEEEE
Q 007752 159 ENVG-KSKGDGRYL---KG--QIYTLRIPQVDGGSTLSIKVNWSQ 197 (591)
Q Consensus 159 ~~~~-~~~~~~~ll---~~--~~F~~~v~~i~~~~~v~v~i~y~q 197 (591)
|+.+ +++++++|+ ++ |+|+++| |||||++++|+|+|.|
T Consensus 87 Ye~A~~~G~~a~L~eq~~~~~~~F~~~V-NIppg~~v~v~l~Y~e 130 (130)
T smart00609 87 YEKAVSQGKTAGLVRASGRSMEQFTVSV-NVAPGSKVTFELTYEE 130 (130)
T ss_pred HHHHHHcCCCeEEEEecCCccCcEEEEE-EeCCCCEEEEEEEEEC
Confidence 6666 456677788 56 9999999 9999999999999985
No 7
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.89 E-value=3.8e-22 Score=185.04 Aligned_cols=153 Identities=30% Similarity=0.432 Sum_probs=128.1
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCch
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNI 405 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l 405 (591)
.+++||||+||||.+.+++.+|+++..+++.|+++++++|+.|+++++.+.+. .+.+..+...+.++++.+.++|+|++
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~g~T~~ 79 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPL-RRMTAKGKRSAKRVVDGLQAGGGTNV 79 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCCC-cccCHHHHHHHHHHHHhccCCCCccH
Confidence 37899999999999999999999999999999999999999999998776553 34556677788888999999999999
Q ss_pred HHHHHHHHHHhhcC--CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007752 406 LLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (591)
Q Consensus 406 ~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~ 483 (591)
+.||..+.+.+... .+..+.|||+|||.+++... +.. ....++.||+||+|...+..+|+.||+.++|.|
T Consensus 80 ~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~----~~~----~~~~~v~v~~igig~~~~~~~l~~iA~~t~G~~ 151 (155)
T cd01466 80 VGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAV----VLR----ADNAPIPIHTFGLGASHDPALLAFIAEITGGTF 151 (155)
T ss_pred HHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchh----hhc----ccCCCceEEEEecCCCCCHHHHHHHHhccCceE
Confidence 99999999998643 23456899999999875411 111 123469999999999899999999999999999
Q ss_pred EEcC
Q 007752 484 DSAY 487 (591)
Q Consensus 484 ~~v~ 487 (591)
+++.
T Consensus 152 ~~~~ 155 (155)
T cd01466 152 SYVK 155 (155)
T ss_pred EEeC
Confidence 9873
No 8
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.89 E-value=5.4e-22 Score=186.67 Aligned_cols=166 Identities=22% Similarity=0.297 Sum_probs=133.8
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCchH
Q 007752 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNIL 406 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l~ 406 (591)
+++||+|+||||.+.+++.+|+++..++..|+++++++++.|+++...+.+.... .+...+.+.+..+.++|+|++.
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~g~T~~~ 78 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPV---RDKAAILAAIDRLTAGGSTAGG 78 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCccc---chHHHHHHHHHcCCCCCCCCHH
Confidence 6899999999999989999999999999999999999999999998776543221 2345666678888899999999
Q ss_pred HHHHHHHHHhhcCC--CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEE
Q 007752 407 LPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484 (591)
Q Consensus 407 ~aL~~a~~~l~~~~--~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~ 484 (591)
.+|+.|++.+.+.. +..+.|||+|||.+++.....+.+.+.+......++.||+||+|...+..+|+.||+.++|.|+
T Consensus 79 ~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~~~~g~~~ 158 (170)
T cd01465 79 AGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGNTA 158 (170)
T ss_pred HHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHhcCCceEE
Confidence 99999999886542 3336899999999865433333334433333345699999999999999999999999999999
Q ss_pred EcCCCCchHHH
Q 007752 485 SAYDPGSVDYR 495 (591)
Q Consensus 485 ~v~~~~~l~~~ 495 (591)
++.+.+++++.
T Consensus 159 ~~~~~~~~~~~ 169 (170)
T cd01465 159 YIDNLAEARKV 169 (170)
T ss_pred EeCCHHHHHhh
Confidence 99998877653
No 9
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.87 E-value=6e-21 Score=185.64 Aligned_cols=166 Identities=19% Similarity=0.248 Sum_probs=128.9
Q ss_pred CccCceEEEEEeCCcCCC------cchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCce------eee---cccccC---C
Q 007752 322 KVFRKDVVFLVDVSGSMQ------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETH------LFS---SSMKLA---S 383 (591)
Q Consensus 322 ~~~p~~vvfviD~SgSM~------g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~------~~~---~~~~~~---~ 383 (591)
...+.+++||||+||||. +.+++.+|+++..+++.++++++|+|+.|+++.. ... +..... .
T Consensus 17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~ 96 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFP 96 (206)
T ss_pred cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCCC
Confidence 456889999999999998 5799999999999999999999999999999532 111 111111 1
Q ss_pred HHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcC-CCCCCeEEEE
Q 007752 384 QGTIINATQWLSSLV-AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNT-RSISPRICTF 461 (591)
Q Consensus 384 ~~~~~~a~~~i~~l~-a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~-~~~~~~I~ti 461 (591)
..+...+.+.|+.+. ++|+|+|..+|+.|.+.+. .+..+.|||+|||..++....++.+++..+.. ...+++||+|
T Consensus 97 ~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i 174 (206)
T cd01456 97 SAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVI 174 (206)
T ss_pred cccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEE
Confidence 135677777788888 8899999999999999985 34457999999999876544445444444321 2246999999
Q ss_pred EcCCCCCHHHHHHHHHhCCCEE-EEcCCC
Q 007752 462 GVGLYCNHYFLQILAQIGRGYY-DSAYDP 489 (591)
Q Consensus 462 GiG~~~~~~lL~~LA~~~~G~~-~~v~~~ 489 (591)
|||.+.+..+|+.||+.++|.| +.+.+.
T Consensus 175 giG~~~~~~~l~~iA~~tgG~~~~~~~~~ 203 (206)
T cd01456 175 DFGGDADRAELEAIAEATGGTYAYNQSDL 203 (206)
T ss_pred EecCcccHHHHHHHHHhcCCeEecccccc
Confidence 9999999999999999999999 655543
No 10
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.87 E-value=3.7e-21 Score=185.94 Aligned_cols=168 Identities=20% Similarity=0.226 Sum_probs=127.5
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC---CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC-----
Q 007752 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV----- 398 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~----- 398 (591)
|++||||+||||.+.+++.+|.++..+++.|.. +++++|+.|+++++.+.+.. .....+...++++|+.+.
T Consensus 2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 80 (198)
T cd01470 2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIR-DFNSNDADDVIKRLEDFNYDDHG 80 (198)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecc-cCCCCCHHHHHHHHHhCCccccc
Confidence 799999999999999999999999999999863 79999999999988765532 233334556667777665
Q ss_pred CCCCCchHHHHHHHHHHhhcC--------CCCccEEEEEecCCCCCh---hhHHHHHHHHHhcC------CCCCCeEEEE
Q 007752 399 AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDE---RGICNEIKSYLTNT------RSISPRICTF 461 (591)
Q Consensus 399 a~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~---~~~~~~v~~~~~~~------~~~~~~I~ti 461 (591)
.+|||+++.||+.+.+.+... ....+.|||||||.++.. ....+.+++.+... ...++.||+|
T Consensus 81 ~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~i 160 (198)
T cd01470 81 DKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYVF 160 (198)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEEE
Confidence 358999999999998866311 123467999999998743 23334444443221 2346899999
Q ss_pred EcCCCCCHHHHHHHHHhCCC--EEEEcCCCCchHHH
Q 007752 462 GVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYR 495 (591)
Q Consensus 462 GiG~~~~~~lL~~LA~~~~G--~~~~v~~~~~l~~~ 495 (591)
|+|++.|...|+.||+.++| +++.+.+.+++.+.
T Consensus 161 GvG~~~~~~~L~~iA~~~~g~~~~f~~~~~~~l~~v 196 (198)
T cd01470 161 GVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQEV 196 (198)
T ss_pred ecCcccCHHHHHHHhcCCCCCceEEEeCCHHHHHHh
Confidence 99999999999999999998 57777777766544
No 11
>PRK13685 hypothetical protein; Provisional
Probab=99.82 E-value=5.8e-19 Score=183.35 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=132.8
Q ss_pred cCceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC
Q 007752 324 FRKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g-----~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
.+.+++||+|+||||.+ ++++.+|+++..+++.++++|+++++.|++++....+.+ . +.+.....|+.+.
T Consensus 87 ~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t--~---d~~~l~~~l~~l~ 161 (326)
T PRK13685 87 NRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPT--T---NREATKNAIDKLQ 161 (326)
T ss_pred CCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCC--C---CHHHHHHHHHhCC
Confidence 45689999999999986 589999999999999998899999999999988765532 2 3445556678888
Q ss_pred CCCCCchHHHHHHHHHHhhcC--------CCCccEEEEEecCCCCChh------hHHHHHHHHHhcCCCCCCeEEEEEcC
Q 007752 399 AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDER------GICNEIKSYLTNTRSISPRICTFGVG 464 (591)
Q Consensus 399 a~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~~------~~~~~v~~~~~~~~~~~~~I~tiGiG 464 (591)
++|+|+++.++..|++.+... ....+.||++|||..+... ...+..+. +. ..+++||+||+|
T Consensus 162 ~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~-a~---~~gi~i~~Ig~G 237 (326)
T PRK13685 162 LADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAART-AK---DQGVPISTISFG 237 (326)
T ss_pred CCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHH-HH---HcCCeEEEEEEC
Confidence 999999999999999987621 2234689999999976432 11122222 22 346999999999
Q ss_pred CC--------------CCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007752 465 LY--------------CNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 465 ~~--------------~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~ 502 (591)
+. .|...|++||+.|||.|+.+.+.+++.+.+.++-+.
T Consensus 238 ~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~~~L~~if~~I~~~ 289 (326)
T PRK13685 238 TPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASLEELRAVYATLQQQ 289 (326)
T ss_pred CCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCHHHHHHHHHHHHHH
Confidence 74 478899999999999999998888777766666544
No 12
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.82 E-value=6.8e-19 Score=197.88 Aligned_cols=162 Identities=23% Similarity=0.250 Sum_probs=124.2
Q ss_pred CccCceEEEEEeCCcCCCc-chHHHHHHHHHHHH-HhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC
Q 007752 322 KVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASL-SKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 322 ~~~p~~vvfviD~SgSM~g-~~i~~ak~al~~~l-~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a 399 (591)
+..++.++||||+||||.+ +++..+|+|+..++ +.++++|+++||.|++.+....+...-.+...++.....+ ...+
T Consensus 301 q~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~aL~~~L-~~~A 379 (863)
T TIGR00868 301 KIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNELIQITSSAERDALTANL-PTAA 379 (863)
T ss_pred ccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeeccccCCcHHHHHHHHHhh-cccc
Confidence 4456789999999999986 68999999998776 4578899999999999988765533222333444444444 3568
Q ss_pred CCCCchHHHHHHHHHHhhcCC--CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007752 400 GGGTNILLPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~~--~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~ 477 (591)
+|||+|+.||..|++.+.+.. ...+.|||||||..+....+...++ ..+++||+||+|.+.+. .|+.||+
T Consensus 380 ~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~~~~l~~lk-------~~gVtI~TIg~G~dad~-~L~~IA~ 451 (863)
T TIGR00868 380 SGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTISSCFEEVK-------QSGAIIHTIALGPSAAK-ELEELSD 451 (863)
T ss_pred CCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCHHHHHHHHH-------HcCCEEEEEEeCCChHH-HHHHHHH
Confidence 899999999999999997643 2457999999999876544333322 23699999999998765 4899999
Q ss_pred hCCCEEEEcCCCCch
Q 007752 478 IGRGYYDSAYDPGSV 492 (591)
Q Consensus 478 ~~~G~~~~v~~~~~l 492 (591)
.|||.++++.+..++
T Consensus 452 ~TGG~~f~asd~~dl 466 (863)
T TIGR00868 452 MTGGLRFYASDQADN 466 (863)
T ss_pred hcCCEEEEeCCHHHH
Confidence 999999999876554
No 13
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.81 E-value=1.2e-18 Score=165.55 Aligned_cols=156 Identities=25% Similarity=0.291 Sum_probs=117.9
Q ss_pred EEEEEeCCcCCCcc-hHHHHHHHHHHHHHh-CCCCCeEEEEEeCCC-ceeeecccccCCHHHHHHHHHHHhcCCCCCCCc
Q 007752 328 VVFLVDVSGSMQGV-LLEQTKNALSASLSK-LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 328 vvfviD~SgSM~g~-~i~~ak~al~~~l~~-L~~~d~~~Iv~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~ 404 (591)
++||||+||||.+. +++.+|.++..++.. +.++|+++|+.|+++ .....+.. .+...+.++++.+.++|+|+
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t-----~~~~~~~~~l~~l~~~G~T~ 77 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPT-----RSVELAKRRLARLPTGGGTP 77 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCC-----CCHHHHHHHHHhCCCCCCCc
Confidence 78999999999986 999999999999864 567999999999875 45433321 23344566788888999999
Q ss_pred hHHHHHHHHHHhh-cC--CCCccEEEEEecCCCCChhh----HHHHHHHHHhcCCCCCCeEEEEEcCCC-CCHHHHHHHH
Q 007752 405 ILLPLKQAIKLLS-DT--SESIPLIFLITDGTVGDERG----ICNEIKSYLTNTRSISPRICTFGVGLY-CNHYFLQILA 476 (591)
Q Consensus 405 l~~aL~~a~~~l~-~~--~~~~~~IillTDG~~~~~~~----~~~~v~~~~~~~~~~~~~I~tiGiG~~-~~~~lL~~LA 476 (591)
+..+|..+++.+. .. .+..+.|||+|||..+.... ....+.+.+. ..++.+++||+|.+ .+..+|++||
T Consensus 78 l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~---~~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 78 LAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLR---ARGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHH---hcCCcEEEEeCCCCccCccHHHHHH
Confidence 9999999999872 11 23357999999999874221 1122222222 34588999999864 5788999999
Q ss_pred HhCCCEEEEcCCCCc
Q 007752 477 QIGRGYYDSAYDPGS 491 (591)
Q Consensus 477 ~~~~G~~~~v~~~~~ 491 (591)
+.+||.|+++.+.+.
T Consensus 155 ~~tgG~~~~~~d~~~ 169 (178)
T cd01451 155 RALGGQYVRLPDLSA 169 (178)
T ss_pred HHcCCeEEEcCcCCH
Confidence 999999999988764
No 14
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.80 E-value=4.7e-19 Score=169.46 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=121.2
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC---------CCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHH
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---------NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWL 394 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L---------~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i 394 (591)
+|.|++||||.|+||.+.+++.+|++++.+++.| +.+++++|+.|++.+....+.... ..+...+.+.|
T Consensus 1 c~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~--~~~~~~l~~~i 78 (186)
T cd01480 1 GPVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRD--IRNYTSLKEAV 78 (186)
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccc--cCCHHHHHHHH
Confidence 4789999999999999999999999999999888 336899999999998765543210 23445555567
Q ss_pred hcCCC-CCCCchHHHHHHHHHHhhc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCH
Q 007752 395 SSLVA-GGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNH 469 (591)
Q Consensus 395 ~~l~a-~GgT~l~~aL~~a~~~l~~--~~~~~~~IillTDG~~~~~--~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~ 469 (591)
+++.. +|+|+++.||..|.+.+.. .++..+.|||+|||..+.. ....+.++.. + ..++.||+||+|. .|.
T Consensus 79 ~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~-~---~~gi~i~~vgig~-~~~ 153 (186)
T cd01480 79 DNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEA-D---HLGIKIFFVAVGS-QNE 153 (186)
T ss_pred HhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHH-H---HCCCEEEEEecCc-cch
Confidence 77764 7999999999999998874 3466789999999987432 2222222222 2 3469999999999 788
Q ss_pred HHHHHHHHhCCCEEEEcCCCCc
Q 007752 470 YFLQILAQIGRGYYDSAYDPGS 491 (591)
Q Consensus 470 ~lL~~LA~~~~G~~~~v~~~~~ 491 (591)
..|++||..+++.|+ ..+..+
T Consensus 154 ~~L~~IA~~~~~~~~-~~~~~~ 174 (186)
T cd01480 154 EPLSRIACDGKSALY-RENFAE 174 (186)
T ss_pred HHHHHHHcCCcchhh-hcchhh
Confidence 899999999988744 444443
No 15
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.80 E-value=3.8e-18 Score=162.20 Aligned_cols=162 Identities=25% Similarity=0.256 Sum_probs=123.7
Q ss_pred CceEEEEEeCCcCCCc------chHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC
Q 007752 325 RKDVVFLVDVSGSMQG------VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 325 p~~vvfviD~SgSM~g------~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..+++|+||+|+||.. .+++.+|.++..++... ++++++++.|++......+.. .+...+.++++.+....
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLT--LDRESLKELLEDIKIGL 78 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEEcCCeeeccCCC--ccHHHHHHHHHHhhhcc
Confidence 4689999999999974 36789999998888764 689999999999877654422 34455555655555445
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCC-----------CC
Q 007752 399 AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGL-----------YC 467 (591)
Q Consensus 399 a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~-----------~~ 467 (591)
.+|+|+++.||..+++.+.......+.|||+|||..+..........+.+. ..+++||+||+|. ..
T Consensus 79 ~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~---~~gi~i~~i~ig~~~~~~~~~~~~~~ 155 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAK---NKGVRIYTIGVGKSGSGPKPDGSTIL 155 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH---HCCCEEEEEEecCCCCCcCCCCcccC
Confidence 689999999999999998765556689999999997653222222223322 2359999999998 47
Q ss_pred CHHHHHHHHHhCCCEEEEcCCCCch
Q 007752 468 NHYFLQILAQIGRGYYDSAYDPGSV 492 (591)
Q Consensus 468 ~~~lL~~LA~~~~G~~~~v~~~~~l 492 (591)
+...|+.||+.|+|.|+++.+.++|
T Consensus 156 ~~~~l~~la~~tgG~~~~~~~~~~~ 180 (180)
T cd01467 156 DEDSLVEIADKTGGRIFRALDGFEL 180 (180)
T ss_pred CHHHHHHHHHhcCCEEEEecCcccC
Confidence 8889999999999999999887653
No 16
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.79 E-value=3.9e-18 Score=162.28 Aligned_cols=161 Identities=17% Similarity=0.257 Sum_probs=121.2
Q ss_pred ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhC---CCCCeEEEEEe-CCCceeeecccccCCHHHHHHHHHHHhc
Q 007752 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAF-NGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 326 ~~vvfviD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~~~Iv~F-~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
++++|+||.|+||.. ++++.+|.++..|++.+ +++++++++.| ++.++...|.+ .+.+.+ ...+..
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT--~D~~~~---~~~L~~ 78 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLT--GNPRKH---IQALKT 78 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCC--CCHHHH---HHHhhc
Confidence 689999999999984 69999999999999864 67899999999 78888876643 344433 333443
Q ss_pred C-CCCCCCchHHHHHHHHHHhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007752 397 L-VAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 397 l-~a~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~ 473 (591)
+ ...|||+++.||+.|++.+...+. ..+.|||+|||...+.....+.++. +++ .+++|++||+|.+ ..+|+
T Consensus 79 ~~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~-l~~---~~I~v~~IgiG~~--~~~L~ 152 (183)
T cd01453 79 ARECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDK-LKK---ENIRVSVIGLSAE--MHICK 152 (183)
T ss_pred ccCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHH-HHH---cCcEEEEEEechH--HHHHH
Confidence 3 556889999999999999975322 3457888999886655444333333 222 3599999999964 56899
Q ss_pred HHHHhCCCEEEEcCCCCchHHHHH
Q 007752 474 ILAQIGRGYYDSAYDPGSVDYRIR 497 (591)
Q Consensus 474 ~LA~~~~G~~~~v~~~~~l~~~l~ 497 (591)
.||+.|||.|+.+.+.+++.+.+.
T Consensus 153 ~ia~~tgG~~~~~~~~~~l~~~~~ 176 (183)
T cd01453 153 EICKATNGTYKVILDETHLKELLL 176 (183)
T ss_pred HHHHHhCCeeEeeCCHHHHHHHHH
Confidence 999999999999988766654443
No 17
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.79 E-value=1.9e-18 Score=163.80 Aligned_cols=141 Identities=26% Similarity=0.365 Sum_probs=108.8
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC------CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC
Q 007752 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~------~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..+++||||+||||.+.+++.+|+++..+++.|.+ +++++|+.|+++++...+... ..+ ..+..+.
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~---~~~-----~~~~~l~ 74 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTP---LES-----FQPPRLT 74 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCcc---HHh-----cCCCccc
Confidence 45799999999999999999999999999998864 469999999999887655321 111 1245678
Q ss_pred CCCCCchHHHHHHHHHHhhcC---------CCCccEEEEEecCCCCChhhHH-HHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 399 AGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGIC-NEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 399 a~GgT~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~~~~~~~~-~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
++|||+++.||..|++.+... ....+.|||+|||.+++..... +.+++ ....+++|++||+|.++|
T Consensus 75 ~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~----~~~~~~~i~~igiG~~~~ 150 (176)
T cd01464 75 ASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKE----ARDSKGRIVACAVGPKAD 150 (176)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHh----hcccCCcEEEEEeccccC
Confidence 889999999999999998542 1224589999999987653322 23333 223468999999999999
Q ss_pred HHHHHHHHH
Q 007752 469 HYFLQILAQ 477 (591)
Q Consensus 469 ~~lL~~LA~ 477 (591)
..+|+.||.
T Consensus 151 ~~~L~~ia~ 159 (176)
T cd01464 151 LDTLKQITE 159 (176)
T ss_pred HHHHHHHHC
Confidence 999999986
No 18
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.78 E-value=9.1e-18 Score=157.18 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=118.4
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC-CC
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GG 401 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a-~G 401 (591)
.|++||+|.||||.+.+++.+|+++..++..|. .+++++|+.|++++....+.....+ ...+.+.++.+.. +|
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~g 77 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRS---KDDVLEAVKNLRYIGG 77 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCC---HHHHHHHHHhCcCCCC
Confidence 479999999999999999999999999999885 4679999999999887655432233 4445555666776 68
Q ss_pred CCchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007752 402 GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA 476 (591)
+|+++.||..|.+.+.. .++..+.+||+|||.+++.. ....... . ..++++|+||+|.. +...|+.||
T Consensus 78 ~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~--~~~~~~l-~---~~gv~i~~ig~g~~-~~~~L~~ia 150 (164)
T cd01472 78 GTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDV--EEPAVEL-K---QAGIEVFAVGVKNA-DEEELKQIA 150 (164)
T ss_pred CchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchH--HHHHHHH-H---HCCCEEEEEECCcC-CHHHHHHHH
Confidence 89999999999998875 23556789999999876532 2222222 2 24599999999987 999999999
Q ss_pred HhCCCEEEEcC
Q 007752 477 QIGRGYYDSAY 487 (591)
Q Consensus 477 ~~~~G~~~~v~ 487 (591)
..++|.|.+..
T Consensus 151 ~~~~~~~~~~~ 161 (164)
T cd01472 151 SDPKELYVFNV 161 (164)
T ss_pred CCCchheEEec
Confidence 99999877653
No 19
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.78 E-value=9.2e-18 Score=160.40 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=123.9
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCC
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~Gg 402 (591)
.+.|++||||+||||.+. +...+++++.+++.+ .++++|+|+.|+++++...+... ....+.++++.++.+.++|+
T Consensus 3 ~~~Dvv~llD~SgSm~~~-~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~--~~~~~~~~l~~l~~~~~~g~ 79 (185)
T cd01474 3 GHFDLYFVLDKSGSVAAN-WIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTD--DSSAIIKGLEVLKKVTPSGQ 79 (185)
T ss_pred CceeEEEEEeCcCchhhh-HHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccc--cHHHHHHHHHHHhccCCCCC
Confidence 357999999999999874 444556677776654 46799999999999887666432 22345566666777778899
Q ss_pred CchHHHHHHHHHHhhcC-C---CCccEEEEEecCCCCC--hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007752 403 TNILLPLKQAIKLLSDT-S---ESIPLIFLITDGTVGD--ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~~-~---~~~~~IillTDG~~~~--~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA 476 (591)
|+++.||+.|.+.+... . ...+.+||+|||..++ .......++.. . ..++.||+||+| +.+...|+.||
T Consensus 80 T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l-~---~~gv~i~~vgv~-~~~~~~L~~iA 154 (185)
T cd01474 80 TYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLS-R---KLGAIVYCVGVT-DFLKSQLINIA 154 (185)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHH-H---HcCCEEEEEeec-hhhHHHHHHHh
Confidence 99999999999877422 1 1236899999999842 22222333222 2 235899999994 46888999999
Q ss_pred HhCCCEEEEcCCCCchHHHHHHHHHHhcc
Q 007752 477 QIGRGYYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 477 ~~~~G~~~~v~~~~~l~~~l~~~l~~~~~ 505 (591)
...++.|....+.+.|...+..+.+.++.
T Consensus 155 ~~~~~~f~~~~~~~~l~~~~~~~~~~~C~ 183 (185)
T cd01474 155 DSKEYVFPVTSGFQALSGIIESVVKKACI 183 (185)
T ss_pred CCCCeeEecCccHHHHHHHHHHHHHhhcc
Confidence 97765443456677787777777777664
No 20
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=99.77 E-value=1.6e-17 Score=172.61 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=91.1
Q ss_pred ccccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEE---EEEehhhhh
Q 007752 80 ALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQS---KLISLDDAE 156 (591)
Q Consensus 80 ~~~pL~~~~v~v~v~~~i~~a~v~~~~~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~---~v~~k~~a~ 156 (591)
..+-|.++.|+|+|.|.+ |+|+++|+|+| ++++.+||.|.||||++|+|++|+|+++|+...+ +++||++|+
T Consensus 412 kaV~L~Sh~VtVeIeg~i--A~TEIEqTF~N---PN~r~LEGElsFPLPEgAtVTGyALdvdGkL~Daw~~VVVEKEKAR 486 (952)
T TIGR02921 412 KKVLIANMAITVEEHGDN--ADIEIVETLEN---QTPENHEVFFHFSLPEEAAITGLWLGDDAKDDDKFAFALAPRGAAQ 486 (952)
T ss_pred CceeEeeeeEEEEEECCe--EEEEEEEEEEC---CCCCceeEEEEecCCCCCeeeeeeecCCccccccccceeccHHHHH
Confidence 346677888888888874 67999999999 7999999999999999999999999999999988 999999999
Q ss_pred h-hhhhcccc--CCccce---ecCceEEEccCCCCC
Q 007752 157 Y-KENVGKSK--GDGRYL---KGQIYTLRIPQVDGG 186 (591)
Q Consensus 157 ~-~~~~~~~~--~~~~ll---~~~~F~~~v~~i~~~ 186 (591)
+ ||++.+++ .|+||+ .+|.|++||+||||.
T Consensus 487 QVYEdevRQGrpiDPALLEK~~gN~FriRVYPIPPr 522 (952)
T TIGR02921 487 KVYNDEVQQERPIDPALLEQVGPRHYRLRAFPIPPR 522 (952)
T ss_pred HHHHHHHHhcCCCCchhheeccCCeeeEEEccCCcc
Confidence 6 67777776 599998 689999999999994
No 21
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.77 E-value=6.3e-18 Score=158.48 Aligned_cols=163 Identities=33% Similarity=0.465 Sum_probs=123.1
Q ss_pred eEEEEEeCCcCCCcc-----hHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHh-cCCCC
Q 007752 327 DVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAG 400 (591)
Q Consensus 327 ~vvfviD~SgSM~g~-----~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~a~ 400 (591)
|++||+|.||||.+. +++.+++++..+++.++ +++|+|+.|++......+. ..+...+.++++.+. ....+
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~f~~~~~~~~~~--t~~~~~~~~~l~~~~~~~~~~ 77 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GDRVGLVSFSDSSRTLSPL--TSDKDELKNALNKLSPQGMPG 77 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TSEEEEEEESTSCEEEEEE--ESSHHHHHHHHHTHHHHG--S
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CCEEEEEEecccccccccc--cccHHHHHHHhhcccccccCc
Confidence 689999999999976 79999999999999976 7799999999988765543 356777777766666 45668
Q ss_pred CCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-HHHHHHHHHhC
Q 007752 401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN-HYFLQILAQIG 479 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~-~~lL~~LA~~~ 479 (591)
|+|++..||..|.+.+.......+.||++|||.++.. ..+.++.. . ..+++||+|++|...+ ...|+.||+.+
T Consensus 78 ~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~~--~~~~~~~~-~---~~~i~i~~v~~~~~~~~~~~l~~la~~t 151 (172)
T PF13519_consen 78 GGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNSS--DIEAAKAL-K---QQGITIYTVGIGSDSDANEFLQRLAEAT 151 (172)
T ss_dssp SS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHCH--HHHHHHHH-H---CTTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCcc--hhHHHHHH-H---HcCCeEEEEEECCCccHHHHHHHHHHhc
Confidence 9999999999999999876556789999999987632 23333333 2 3459999999998766 47899999999
Q ss_pred CCEEEEc-CCCCchHHHHHH
Q 007752 480 RGYYDSA-YDPGSVDYRIRR 498 (591)
Q Consensus 480 ~G~~~~v-~~~~~l~~~l~~ 498 (591)
||.|+.+ .+.+++...|.+
T Consensus 152 gG~~~~~~~~~~~l~~~~~~ 171 (172)
T PF13519_consen 152 GGRYFHVDNDPEDLDDAFQQ 171 (172)
T ss_dssp EEEEEEE-SSSHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHhc
Confidence 9999998 577777666554
No 22
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.76 E-value=3.7e-17 Score=168.10 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=130.9
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC---
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA--- 399 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a--- 399 (591)
.|.+++||||+||||.+ ++..+++++..+++. ++++|+++|+.|++++..+.+.. .+.+.+.++ |+.+.+
T Consensus 52 ~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t--~~~~~l~~~---l~~l~~~~~ 125 (296)
T TIGR03436 52 LPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFT--SDPRLLEAA---LNRLKPPLR 125 (296)
T ss_pred CCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCC--CCHHHHHHH---HHhccCCCc
Confidence 57899999999999986 789999999999987 78899999999999987765432 344444444 555555
Q ss_pred ------------CCCCchHHHHHHHH-HHhhcCCC---CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEc
Q 007752 400 ------------GGGTNILLPLKQAI-KLLSDTSE---SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGV 463 (591)
Q Consensus 400 ------------~GgT~l~~aL~~a~-~~l~~~~~---~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGi 463 (591)
+|+|+++.||..+. +++....+ ..+.||++|||..+........+.+.+. ..++.||+||+
T Consensus 126 ~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~---~~~v~vy~I~~ 202 (296)
T TIGR03436 126 TDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQ---RADVAIYSIDA 202 (296)
T ss_pred cccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHH---HcCCEEEEecc
Confidence 79999999986664 44433221 3578999999997654433333333332 24699999999
Q ss_pred CCC-------------CCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccc
Q 007752 464 GLY-------------CNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 464 G~~-------------~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~~p 506 (591)
|.. .+...|+.||..|||.++++ +.+++...+.++.+.+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~~~~l~~~f~~i~~~~~~~ 257 (296)
T TIGR03436 203 RGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-NSNDLDGAFAQIAEELRSQ 257 (296)
T ss_pred CccccCCcccccccCCCcHHHHHHHHHHhCCeEecc-cCccHHHHHHHHHHHHhhe
Confidence 842 35789999999999999988 8889998888888877654
No 23
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.75 E-value=3.1e-17 Score=156.92 Aligned_cols=150 Identities=23% Similarity=0.218 Sum_probs=114.3
Q ss_pred ceEEEEEeCCcCCCcch-HHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeeccccc--CCHHHHHHHHHHHhc-CC
Q 007752 326 KDVVFLVDVSGSMQGVL-LEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKL--ASQGTIINATQWLSS-LV 398 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~-i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~-l~ 398 (591)
.|++||+|+||||.+.. ++.+|+++..+++.+. ++.+++|+.|++.+....+.... .+...+..+++.+.. ..
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~ 80 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYY 80 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcC
Confidence 37999999999999887 9999999999999885 46799999999998865543221 123333335554443 35
Q ss_pred CCCCCchHHHHHHHHHHhhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007752 399 AGGGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (591)
Q Consensus 399 a~GgT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~ 474 (591)
++|+|++..||..|.+.+.. +++..+.|||+|||.+++.....+.+++.. ..++.+++||+|.+.|..+|+.
T Consensus 81 ~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l~----~~gv~v~~igiG~~~d~~~l~~ 156 (186)
T cd01471 81 PNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKLR----ERGVIIAVLGVGQGVNHEENRS 156 (186)
T ss_pred CCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHHH----HCCCEEEEEEeehhhCHHHHHH
Confidence 67999999999999998865 234557899999999876655544444332 2358999999999999999999
Q ss_pred HHHhC
Q 007752 475 LAQIG 479 (591)
Q Consensus 475 LA~~~ 479 (591)
||...
T Consensus 157 ia~~~ 161 (186)
T cd01471 157 LVGCD 161 (186)
T ss_pred hcCCC
Confidence 99875
No 24
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.74 E-value=5e-17 Score=160.15 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=127.5
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC-C
Q 007752 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-G 400 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a-~ 400 (591)
|.|++||||.|+||.+.+++.+|+++..+++.|. ..++|+|+.|+++++...+.....+.+.+..++ +.+.. +
T Consensus 2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i---~~i~~~~ 78 (224)
T cd01475 2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAV---RRMEYLE 78 (224)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHH---HhCcCCC
Confidence 6799999999999999999999999999999885 367999999999998766654334555566664 44544 4
Q ss_pred CCCchHHHHHHHHHHhhc-----CCCC---ccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 007752 401 GGTNILLPLKQAIKLLSD-----TSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~-----~~~~---~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL 472 (591)
|+|++..||+.+++.+.. +++. .+.+||+|||..++. +.+.++.. + ..++.||+||+|. .+...|
T Consensus 79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~--~~~~a~~l-k---~~gv~i~~VgvG~-~~~~~L 151 (224)
T cd01475 79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD--VSEVAAKA-R---ALGIEMFAVGVGR-ADEEEL 151 (224)
T ss_pred CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc--HHHHHHHH-H---HCCcEEEEEeCCc-CCHHHH
Confidence 889999999999876432 1222 578899999997653 22222222 2 2359999999998 488899
Q ss_pred HHHHHhCC-CEEEEcCCCCchHHHHHHHHHHhcc
Q 007752 473 QILAQIGR-GYYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 473 ~~LA~~~~-G~~~~v~~~~~l~~~l~~~l~~~~~ 505 (591)
+.||..++ +.++.+.+.++++....++...++.
T Consensus 152 ~~ias~~~~~~~f~~~~~~~l~~~~~~l~~~~C~ 185 (224)
T cd01475 152 REIASEPLADHVFYVEDFSTIEELTKKFQGKICV 185 (224)
T ss_pred HHHhCCCcHhcEEEeCCHHHHHHHhhhcccccCc
Confidence 99998765 4667777777776666666555553
No 25
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.74 E-value=1.2e-16 Score=152.87 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=117.2
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC---------CCeEEEEEeCCCceeeecccccCCHHHHHHHHHH
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQW 393 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~---------~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~ 393 (591)
..+.|++||||.|+||...+++.+|+.+..++..+.. +.|++||.|+++++..++.....+...+..+++.
T Consensus 17 ~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~~ 96 (193)
T cd01477 17 NLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQG 96 (193)
T ss_pred cceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHHH
Confidence 4678999999999999988999999999888776543 4799999999999887765433355555555442
Q ss_pred -HhcCCCCCCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCC
Q 007752 394 -LSSLVAGGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLY 466 (591)
Q Consensus 394 -i~~l~a~GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~-~~~~~~v~~~~~~~~~~~~~I~tiGiG~~ 466 (591)
+..+..+|||++..||+.|.+++... ++..+.+||||||..+.. .......++ ++ ..++.||+||||.+
T Consensus 97 ~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~-l~---~~GI~i~tVGiG~~ 172 (193)
T cd01477 97 SLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAAR-LK---STGIAIITVAFTQD 172 (193)
T ss_pred HhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHH-HH---HCCCEEEEEEeCCC
Confidence 22455678999999999999998642 334678999999865433 223233222 22 34699999999999
Q ss_pred CCHHHHHHHHHhCCCEEE
Q 007752 467 CNHYFLQILAQIGRGYYD 484 (591)
Q Consensus 467 ~~~~lL~~LA~~~~G~~~ 484 (591)
.|..++++|++...+.|.
T Consensus 173 ~d~~~~~~L~~ias~~~~ 190 (193)
T cd01477 173 ESSNLLDKLGKIASPGMN 190 (193)
T ss_pred CCHHHHHHHHHhcCCCCC
Confidence 898888888887655443
No 26
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.73 E-value=1.5e-16 Score=150.87 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=119.3
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC---CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC-CCCC
Q 007752 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AGGG 402 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-a~Gg 402 (591)
|++||||.|+||.+..++.+|+++..+++.|.. ..||+++.|+++++...+.....+..++.++ ++.+. .+|+
T Consensus 2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~---i~~~~~~~g~ 78 (177)
T cd01469 2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSL---VKHISQLLGL 78 (177)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHHHHH---HHhCccCCCC
Confidence 799999999999988999999999999998864 6899999999998876554433444444444 55554 4588
Q ss_pred CchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHHHH
Q 007752 403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYFLQ 473 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~----~~lL~ 473 (591)
|+++.||+.|.+.+.. +++..+.+||+|||..++.....+. .+.++ ..++.||+||+|...+ ...|+
T Consensus 79 T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~~-~~~~k---~~gv~v~~Vgvg~~~~~~~~~~~L~ 154 (177)
T cd01469 79 TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDV-IPQAE---REGIIRYAIGVGGHFQRENSREELK 154 (177)
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHHH-HHHHH---HCCcEEEEEEecccccccccHHHHH
Confidence 9999999999987632 2345679999999998765433222 22332 2469999999998764 68899
Q ss_pred HHHHhCCC-EEEEcCCCCch
Q 007752 474 ILAQIGRG-YYDSAYDPGSV 492 (591)
Q Consensus 474 ~LA~~~~G-~~~~v~~~~~l 492 (591)
.||+..++ +++.+.+.++|
T Consensus 155 ~ias~p~~~h~f~~~~~~~l 174 (177)
T cd01469 155 TIASKPPEEHFFNVTDFAAL 174 (177)
T ss_pred HHhcCCcHHhEEEecCHHHh
Confidence 99998875 45556666544
No 27
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.71 E-value=5.5e-16 Score=165.89 Aligned_cols=182 Identities=23% Similarity=0.258 Sum_probs=135.6
Q ss_pred cCceEEEEEeCCcCCCcch-HHHHHHHHHHHHHhCCC-CC--eEEEEEeCCCceeeecccccC--CHHHHHHHHHHHh-c
Q 007752 324 FRKDVVFLVDVSGSMQGVL-LEQTKNALSASLSKLNP-QD--SFNIIAFNGETHLFSSSMKLA--SQGTIINATQWLS-S 396 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~-i~~ak~al~~~l~~L~~-~d--~~~Iv~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~-~ 396 (591)
...+++||||.|+||.... ++.+|.++..++..+.. .| +++++.|++.++.+.+..... +...+..++..+. .
T Consensus 41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~ 120 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKT 120 (576)
T ss_pred CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhh
Confidence 4689999999999997544 47899999999998853 34 555699999988766543222 2233444443333 4
Q ss_pred CCCCCCCchHHHHHHHHHHhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007752 397 LVAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 397 l~a~GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~ 473 (591)
+.++|+|++..||..+.+.+... .+..+.|||||||..++.....+.++.+ + ..++.||+||||.+.+..+|+
T Consensus 121 ~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq~L-R---~~GVeI~vIGVG~g~n~e~Lr 196 (576)
T PTZ00441 121 YLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESRKL-K---DRNVKLAVIGIGQGINHQFNR 196 (576)
T ss_pred ccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHHHH-H---HCCCEEEEEEeCCCcCHHHHH
Confidence 56789999999999999888643 3455799999999986544444444433 2 235899999999999999999
Q ss_pred HHH----HhCCCEEEEcCCCCchHHHHHHHHHHhccceEe
Q 007752 474 ILA----QIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLT 509 (591)
Q Consensus 474 ~LA----~~~~G~~~~v~~~~~l~~~l~~~l~~~~~p~~~ 509 (591)
.|| ..++|.++...+.+++...+..+++++++.+-.
T Consensus 197 lIAgC~p~~g~c~~Y~vadf~eL~~ivk~LikkVC~eve~ 236 (576)
T PTZ00441 197 LLAGCRPREGKCKFYSDADWEEAKNLIKPFIAKVCTEVER 236 (576)
T ss_pred HHhccCCCCCCCceEEeCCHHHHHHHHHHHHHHhcccccc
Confidence 999 346678888888888988888899998876643
No 28
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.71 E-value=3.3e-16 Score=146.63 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=111.7
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC-CCCC
Q 007752 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AGGG 402 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-a~Gg 402 (591)
|++||+|.||||.+..++.+|+++..+++.+. ++++++|+.|+++++...+..... +.+.+.+.++.+. .+|+
T Consensus 2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~~---~~~~l~~~l~~~~~~~g~ 78 (164)
T cd01482 2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYT---SKEDVLAAIKNLPYKGGN 78 (164)
T ss_pred CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCCC---CHHHHHHHHHhCcCCCCC
Confidence 79999999999998899999999999998774 578999999999987655433222 3445666677666 5699
Q ss_pred CchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007752 403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~ 477 (591)
|+++.||+.+.+.+.. .++..+.|||+|||.+++. +.+. .+.++ ..++.||+||+|. .+...|++||.
T Consensus 79 T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~--~~~~-a~~lk---~~gi~i~~ig~g~-~~~~~L~~ia~ 151 (164)
T cd01482 79 TRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDD--VELP-ARVLR---NLGVNVFAVGVKD-ADESELKMIAS 151 (164)
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCch--HHHH-HHHHH---HCCCEEEEEecCc-CCHHHHHHHhC
Confidence 9999999999876532 2345678999999998653 2222 22222 2469999999998 46889999999
Q ss_pred hCCCEEE
Q 007752 478 IGRGYYD 484 (591)
Q Consensus 478 ~~~G~~~ 484 (591)
.+...+.
T Consensus 152 ~~~~~~~ 158 (164)
T cd01482 152 KPSETHV 158 (164)
T ss_pred CCchheE
Confidence 8765443
No 29
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.71 E-value=3.4e-16 Score=144.57 Aligned_cols=145 Identities=27% Similarity=0.283 Sum_probs=108.9
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCc
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~ 404 (591)
++++|+||+||||.+.++..++.++..++..+. .+++++++.|+++.... . .....++.++.+++..+.++|||+
T Consensus 1 ~~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~-~---~~~~~~~~~~~~~l~~~~~~ggT~ 76 (152)
T cd01462 1 GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTK-I---VDKTDDLEEPVEFLSGVQLGGGTD 76 (152)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEE-e---cCCcccHHHHHHHHhcCCCCCCcC
Confidence 479999999999999899999999988888776 48899999999984332 1 123456677778888888899999
Q ss_pred hHHHHHHHHHHhhcCCCCccEEEEEecCCC-CChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHh
Q 007752 405 ILLPLKQAIKLLSDTSESIPLIFLITDGTV-GDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI 478 (591)
Q Consensus 405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~-~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~ 478 (591)
+..||..+++.+.........||++|||.. ....... ...+... ..+++||+||+|++.|..+++..|+.
T Consensus 77 l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~~~~~~-~~~~~~~---~~~~~v~~~~~g~~~~~~~~~~~~~~ 147 (152)
T cd01462 77 INKALRYALELIERRDPRKADIVLITDGYEGGVSDELL-REVELKR---SRVARFVALALGDHGNPGYDRISAED 147 (152)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCHHHH-HHHHHHH---hcCcEEEEEEecCCCCchHHHHhhhh
Confidence 999999999998764444568999999963 3333332 1122221 23589999999999888766555543
No 30
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.70 E-value=2.3e-16 Score=149.20 Aligned_cols=148 Identities=19% Similarity=0.250 Sum_probs=106.5
Q ss_pred eEEEEEeCCcCCCc-chHHHHHHHHHHHHHhCCC-CCeEEEEEeCCCc--e---eeecccccCCHHHHHHHHHHHhcCCC
Q 007752 327 DVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP-QDSFNIIAFNGET--H---LFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 327 ~vvfviD~SgSM~g-~~i~~ak~al~~~l~~L~~-~d~~~Iv~F~~~~--~---~~~~~~~~~~~~~~~~a~~~i~~l~a 399 (591)
.++|+||+||||.+ .+++.+|+++..++..|.. +|+|+|+.|++.. . .+... ...+......+.+.+..+.+
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 80 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKI-KDFDESLHERARKRLAALSP 80 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEe-cCcccccchhHHHHHHccCC
Confidence 47899999999998 5999999999999988875 9999999999873 1 12110 12222222345666788889
Q ss_pred CCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhh------HHHHHHHHHhcCCCCCCeEEEEEcCCCCC---HH
Q 007752 400 GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERG------ICNEIKSYLTNTRSISPRICTFGVGLYCN---HY 470 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~------~~~~v~~~~~~~~~~~~~I~tiGiG~~~~---~~ 470 (591)
+|+|+++.||+.+.+.+...+...+.||++|||.+++... .++...+........++++|+||+|++.. ..
T Consensus 81 ~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~~~~~ 160 (174)
T cd01454 81 GGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDATTVDKE 160 (174)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccccchHH
Confidence 9999999999999999987666778999999999875321 12222111222223469999999999875 44
Q ss_pred HHHHH
Q 007752 471 FLQIL 475 (591)
Q Consensus 471 lL~~L 475 (591)
.++.|
T Consensus 161 ~~~~~ 165 (174)
T cd01454 161 YLKNI 165 (174)
T ss_pred HHHHh
Confidence 44444
No 31
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.70 E-value=5.5e-16 Score=143.82 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=116.0
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCC--C
Q 007752 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG--G 401 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~--G 401 (591)
|++||+|+||||.+.+++.+++++..++..+. ++++++|+.|++......+..... +..+..+.++.+... |
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~ 78 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYK---SKDDLLKAVKNLKYLGGG 78 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCC---CHHHHHHHHHhcccCCCC
Confidence 79999999999998899999999999999886 389999999999877654432222 344555556666543 3
Q ss_pred CCchHHHHHHHHHHhhcCC----CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007752 402 GTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~ 477 (591)
+|++..||..+.+.+.... +..+.+||+|||.+++.....+.++.... .++++++||+|. .+...|+.||.
T Consensus 79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~----~~v~v~~i~~g~-~~~~~l~~la~ 153 (161)
T cd01450 79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKD----EGIKVFVVGVGP-ADEEELREIAS 153 (161)
T ss_pred CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHH----CCCEEEEEeccc-cCHHHHHHHhC
Confidence 8999999999999987653 56679999999998775444444444322 359999999999 78999999999
Q ss_pred hCCCEE
Q 007752 478 IGRGYY 483 (591)
Q Consensus 478 ~~~G~~ 483 (591)
.+++.+
T Consensus 154 ~~~~~~ 159 (161)
T cd01450 154 CPSERH 159 (161)
T ss_pred CCCCCc
Confidence 884443
No 32
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.69 E-value=7.9e-16 Score=169.38 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=125.1
Q ss_pred CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-CCCCCeEEEEEeCCC-ceeeecccccCCHHHHHHHHHHHhcCCC
Q 007752 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 322 ~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~~~Iv~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~a 399 (591)
...+..++||||+||||.+.+|..+|.++..++.. +.+.|+++||.|+++ +.+..+. +. ++..+.++|+.+.+
T Consensus 398 ~~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lpp----T~-~~~~~~~~L~~l~~ 472 (584)
T PRK13406 398 QRSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPP----TR-SLVRAKRSLAGLPG 472 (584)
T ss_pred ccCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCC----Cc-CHHHHHHHHhcCCC
Confidence 34678999999999999999999999999999865 578999999999765 6664442 22 66677888999999
Q ss_pred CCCCchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCChhh-------HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHH
Q 007752 400 GGGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERG-------ICNEIKSYLTNTRSISPRICTFGVGLYCNHY 470 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~-------~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~ 470 (591)
+|||+|+.||..|++.+... ++..+.|||+|||..|.... ...............++++++|++|... ..
T Consensus 473 gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~~-~~ 551 (584)
T PRK13406 473 GGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPRP-QP 551 (584)
T ss_pred CCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCCC-cH
Confidence 99999999999999987543 34568999999999874210 0011111111222345899999999764 45
Q ss_pred HHHHHHHhCCCEEEEcCCCC
Q 007752 471 FLQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 471 lL~~LA~~~~G~~~~v~~~~ 490 (591)
+++.||+.++|.|+.+.+.+
T Consensus 552 ~~~~LA~~~gg~y~~l~~~~ 571 (584)
T PRK13406 552 QARALAEAMGARYLPLPRAD 571 (584)
T ss_pred HHHHHHHhcCCeEEECCCCC
Confidence 78999999999999988764
No 33
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.68 E-value=4.5e-15 Score=142.36 Aligned_cols=173 Identities=15% Similarity=0.138 Sum_probs=122.4
Q ss_pred eEEEEEeCCcCCCcchHH-HHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccc--cCCHHHHHHHHHHHhc-CCC
Q 007752 327 DVVFLVDVSGSMQGVLLE-QTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMK--LASQGTIINATQWLSS-LVA 399 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~-~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~--~~~~~~~~~a~~~i~~-l~a 399 (591)
|++|+||.|+||....+. ..+..+..+++.|. .+.|++|+.|++.++...+... ..+...+..+++.+.. ...
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~ 81 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRS 81 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccCC
Confidence 799999999999877777 48999999999885 3689999999999976554332 2334455555554542 334
Q ss_pred CCCCchHHHHHHHHHHhhcCC----CCccEEEEEecCCCCChh--hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007752 400 GGGTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDER--GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~~~~--~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~ 473 (591)
+|+|++..||+.|.+.+.... +..+.+||||||..++.. .+.+..+. ++ ..++.+|+||||.. +...|+
T Consensus 82 ~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~-lk---~~gV~i~~vGiG~~-~~~el~ 156 (192)
T cd01473 82 GGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLL-YK---EENVKLLVVGVGAA-SENKLK 156 (192)
T ss_pred CCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHH-HH---HCCCEEEEEEeccc-cHHHHH
Confidence 799999999999999875432 236789999999987532 23232222 22 34699999999985 677899
Q ss_pred HHHHhC--CC--EEEEcCCCCchHHHHHHHHHHhc
Q 007752 474 ILAQIG--RG--YYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 474 ~LA~~~--~G--~~~~v~~~~~l~~~l~~~l~~~~ 504 (591)
.||... .+ .+++..+.+++......+.++++
T Consensus 157 ~ia~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~iC 191 (192)
T cd01473 157 LLAGCDINNDNCPNVIKTEWNNLNGISKFLTDKIC 191 (192)
T ss_pred HhcCCCCCCCCCCeEEecchhhHHHHHHHHHhhcc
Confidence 999752 22 23444457777776666666554
No 34
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.66 E-value=1.4e-15 Score=143.58 Aligned_cols=166 Identities=29% Similarity=0.358 Sum_probs=122.1
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhc-CCCCCC
Q 007752 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS-LVAGGG 402 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~-l~a~Gg 402 (591)
||+||||.|+||.+..++.+|+++..+++.+ ..+.+|+++.|++......+.....+...+..++ ... ...+|+
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~g~ 78 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAI--NDSIPSSGGG 78 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHH--HTTGGCCBSS
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccccccccccccc--cccccccchh
Confidence 7999999999999999999999999999966 4578999999999998765543333444444443 133 345599
Q ss_pred CchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007752 403 TNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~ 477 (591)
|++..||+.+.+.+... ++..+.+|++|||.+++.............. .++.+++||+ ..++...|+.||.
T Consensus 79 t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~i~~~~ig~-~~~~~~~l~~la~ 154 (178)
T PF00092_consen 79 TNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS---NGIKVIAIGI-DNADNEELRELAS 154 (178)
T ss_dssp B-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH---CTEEEEEEEE-SCCHHHHHHHHSH
T ss_pred hhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh---cCcEEEEEec-CcCCHHHHHHHhC
Confidence 99999999999998654 5667799999999998775444443333322 2466777666 4678999999997
Q ss_pred hC--CCEEEEcCCCCchHHHHHH
Q 007752 478 IG--RGYYDSAYDPGSVDYRIRR 498 (591)
Q Consensus 478 ~~--~G~~~~v~~~~~l~~~l~~ 498 (591)
.+ .+.++++.+..++.+..++
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~ 177 (178)
T PF00092_consen 155 CPTSEGHVFYLADFSDLSQIIQQ 177 (178)
T ss_dssp SSTCHHHEEEESSHHHHHHHHHH
T ss_pred CCCCCCcEEEcCCHHHHHHHHhc
Confidence 64 4678888887777655443
No 35
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.66 E-value=3.5e-15 Score=139.39 Aligned_cols=146 Identities=18% Similarity=0.239 Sum_probs=106.7
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC---CCeEEEEEeCC--CceeeecccccCCHHHHHHHHHHHhcCCC-C
Q 007752 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNG--ETHLFSSSMKLASQGTIINATQWLSSLVA-G 400 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~~~Iv~F~~--~~~~~~~~~~~~~~~~~~~a~~~i~~l~a-~ 400 (591)
|++|++|+|+||.+ .++..|+++..++..|.. .++++++.|++ ......+.....+. ..+.+.|+.+.. +
T Consensus 2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~---~~l~~~i~~l~~~g 77 (163)
T cd01476 2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDG---EELLEKVDNLRFIG 77 (163)
T ss_pred CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCH---HHHHHHHHhCccCC
Confidence 79999999999986 688889999999988864 79999999999 44444332222233 345555667765 6
Q ss_pred CCCchHHHHHHHHHHhhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC--CCHHHHHH
Q 007752 401 GGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY--CNHYFLQI 474 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~--~~~~lL~~ 474 (591)
|+|++..||+.+.+.+.. +++..+.+|++|||..++.. ....+ .++. ..++.+|+||+|+. .|...|+.
T Consensus 78 g~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~--~~~~~-~l~~--~~~v~v~~vg~g~~~~~~~~~L~~ 152 (163)
T cd01476 78 GTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDP--EKQAR-ILRA--VPNIETFAVGTGDPGTVDTEELHS 152 (163)
T ss_pred CCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCch--HHHHH-HHhh--cCCCEEEEEECCCccccCHHHHHH
Confidence 889999999999999852 23344789999999886431 12222 2222 24699999999998 88888998
Q ss_pred HHHhCCC
Q 007752 475 LAQIGRG 481 (591)
Q Consensus 475 LA~~~~G 481 (591)
||.....
T Consensus 153 ia~~~~~ 159 (163)
T cd01476 153 ITGNEDH 159 (163)
T ss_pred HhCCCcc
Confidence 8765543
No 36
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.64 E-value=1.3e-14 Score=135.95 Aligned_cols=168 Identities=15% Similarity=0.076 Sum_probs=116.7
Q ss_pred ceEEEEEeCCcCCC---------cchHHHHHHHHHHHHH--hCCCCCeEEEEEeCCCceeeec----ccccCCHHHHHHH
Q 007752 326 KDVVFLVDVSGSMQ---------GVLLEQTKNALSASLS--KLNPQDSFNIIAFNGETHLFSS----SMKLASQGTIINA 390 (591)
Q Consensus 326 ~~vvfviD~SgSM~---------g~~i~~ak~al~~~l~--~L~~~d~~~Iv~F~~~~~~~~~----~~~~~~~~~~~~a 390 (591)
+.+++++|.||||. ..+++.+|..+..|.+ .=+.+|+++ |+++.....+ .....+.+.+...
T Consensus 1 ~~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l 77 (191)
T cd01455 1 KRLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETL 77 (191)
T ss_pred CceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHH
Confidence 47899999999992 2578888888777763 224688888 3444321111 1112234444455
Q ss_pred HHHHhcCCCC---CCCchHHHHHHHHHHhh-cCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 007752 391 TQWLSSLVAG---GGTNILLPLKQAIKLLS-DTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGL 465 (591)
Q Consensus 391 ~~~i~~l~a~---GgT~l~~aL~~a~~~l~-~~~~~~~~IillTDG~~~~~~-~~~~~v~~~~~~~~~~~~~I~tiGiG~ 465 (591)
.+.++..+.+ .+|. +||..|++.+. +.+...+.|||||||..+... ...+....... ..+++||+||||.
T Consensus 78 ~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~---~~gV~iytIgiG~ 152 (191)
T cd01455 78 KMMHAHSQFCWSGDHTV--EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAR---EPNVNAFVIFIGS 152 (191)
T ss_pred HHHHHhcccCccCccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHH---hCCCEEEEEEecC
Confidence 5556655543 5566 99999999997 766678899999999976443 22221222222 3469999999998
Q ss_pred CCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007752 466 YCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 466 ~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~ 502 (591)
. +...|+.+|+.++|.|+.+.+.++|+..+.+++..
T Consensus 153 ~-d~~~l~~iA~~tgG~~F~A~d~~~L~~iy~~I~~~ 188 (191)
T cd01455 153 L-SDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTS 188 (191)
T ss_pred C-CHHHHHHHHhCCCCcEEEeCCHHHHHHHHHHHHHH
Confidence 5 67889999999999999999998888877777654
No 37
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.63 E-value=1.3e-14 Score=136.67 Aligned_cols=154 Identities=27% Similarity=0.321 Sum_probs=122.0
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC---CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC--C
Q 007752 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV--A 399 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~--a 399 (591)
|.+++||+|+|+||.+.+++.++.++..++..+.. +++++|+.|++....+.+.. ...+...+...+..+. .
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~ 77 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLN---DSRSKDALLEALASLSYKL 77 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEccc---ccCCHHHHHHHHHhcCCCC
Confidence 57899999999999989999999999999998876 89999999999877665432 2234445555577777 4
Q ss_pred CCCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007752 400 GGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~ 474 (591)
+|+|++..+|+.+.+.+... .+..+.|+++|||.+++.....+.++...+ .++.+++||+|...+...|+.
T Consensus 78 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~----~~i~i~~i~~~~~~~~~~l~~ 153 (177)
T smart00327 78 GGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR----SGVKVFVVGVGNDVDEEELKK 153 (177)
T ss_pred CCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH----CCCEEEEEEccCccCHHHHHH
Confidence 79999999999999987521 122568999999998865444444444432 349999999998778999999
Q ss_pred HHHhCCCEEEE
Q 007752 475 LAQIGRGYYDS 485 (591)
Q Consensus 475 LA~~~~G~~~~ 485 (591)
|+..++|.|.+
T Consensus 154 ~~~~~~~~~~~ 164 (177)
T smart00327 154 LASAPGGVYVF 164 (177)
T ss_pred HhCCCcceEEe
Confidence 99999999876
No 38
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.63 E-value=5.9e-15 Score=142.01 Aligned_cols=165 Identities=23% Similarity=0.256 Sum_probs=126.2
Q ss_pred ccCceEEEEEeCCcCCCcc-hHHHHHHHHHHHHHh-CCCCCeEEEEEeC-CCceeeecccccCCHHHHHHHHHHHhcCCC
Q 007752 323 VFRKDVVFLVDVSGSMQGV-LLEQTKNALSASLSK-LNPQDSFNIIAFN-GETHLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~-~i~~ak~al~~~l~~-L~~~d~~~Iv~F~-~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a 399 (591)
....-|+||+|.||||... +|..+|-++..+|.. ....|++++|.|. ++++++.+. ..+++.+.++|..+.+
T Consensus 76 r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~p-----T~sv~~~~~~L~~l~~ 150 (261)
T COG1240 76 RAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPP-----TSSVELAERALERLPT 150 (261)
T ss_pred CcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCC-----cccHHHHHHHHHhCCC
Confidence 3456799999999999986 899999999888865 4568999999998 557765443 2467888899999999
Q ss_pred CCCCchHHHHHHHHHHhhcCC----CCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHH
Q 007752 400 GGGTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFL 472 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~~~--~~~~~~v~~~~~~~~~~~~~I~tiGiG~-~~~~~lL 472 (591)
+|+|+|.+||..|++++.... +....+|+||||..+.. ..+..............++.+..|.... .....+.
T Consensus 151 GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g~~ 230 (261)
T COG1240 151 GGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEVRLGLA 230 (261)
T ss_pred CCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCccccccHH
Confidence 999999999999999997643 46679999999998643 2222333333333334556677777643 3456789
Q ss_pred HHHHHhCCCEEEEcCCCCch
Q 007752 473 QILAQIGRGYYDSAYDPGSV 492 (591)
Q Consensus 473 ~~LA~~~~G~~~~v~~~~~l 492 (591)
+.||+..||.|+.+.+..+.
T Consensus 231 ~~iA~~~Gg~~~~L~~l~~~ 250 (261)
T COG1240 231 EEIARASGGEYYHLDDLSDD 250 (261)
T ss_pred HHHHHHhCCeEEecccccch
Confidence 99999999999999887654
No 39
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.62 E-value=1.1e-14 Score=161.76 Aligned_cols=163 Identities=23% Similarity=0.258 Sum_probs=122.3
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCc-eeeecccccCCHHHHHHHHHHHhcCCCC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~~~Iv~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~l~a~ 400 (591)
.....++||||+||||.+.+|+.+|.++..++..+ .+.|+|+|+.|++.. ..+.+.. .++..+.+.|+.+.++
T Consensus 405 ~~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t-----~~~~~~~~~L~~l~~g 479 (589)
T TIGR02031 405 KSGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPS-----RSVEQAKRRLDVLPGG 479 (589)
T ss_pred ccCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCC-----CCHHHHHHHHhcCCCC
Confidence 34567999999999999999999999999998764 578999999998764 5543321 2455566778899999
Q ss_pred CCCchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCChh------------hHHHHHHHHHhcCCCCCCeEEEEEcCCC
Q 007752 401 GGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER------------GICNEIKSYLTNTRSISPRICTFGVGLY 466 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~------------~~~~~v~~~~~~~~~~~~~I~tiGiG~~ 466 (591)
|+|+++.||..|++.+... ....+.|||+|||..+... ...+.+..........++.+++|++|..
T Consensus 480 GgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~ 559 (589)
T TIGR02031 480 GGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMR 559 (589)
T ss_pred CCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 9999999999999998643 2345689999999986321 1122222222222234688999999876
Q ss_pred C-CHHHHHHHHHhCCCEEEEcCCCC
Q 007752 467 C-NHYFLQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 467 ~-~~~lL~~LA~~~~G~~~~v~~~~ 490 (591)
. +..+++.||+.++|.|+++.+.+
T Consensus 560 ~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 560 FVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred CccchHHHHHHHhcCCcEEeCCCCC
Confidence 3 45689999999999999988764
No 40
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.58 E-value=8.1e-14 Score=128.12 Aligned_cols=149 Identities=30% Similarity=0.437 Sum_probs=114.7
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC---CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCC
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~Gg 402 (591)
.+++|++|.|+||...+++.+++++..++..+.. .++++++.|++....+.+.....+.+.+.++++.+.. ..+|+
T Consensus 1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (161)
T cd00198 1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKK-GLGGG 79 (161)
T ss_pred CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhccc-CCCCC
Confidence 3789999999999777999999999999999886 8999999999987766554333345555555444432 26699
Q ss_pred CchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007752 403 TNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~-~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~ 479 (591)
|++..|+..+.+.+... ....+.++++|||..++.. ...+.+... . ..+++++.||+|...+...|+.|+..+
T Consensus 80 t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~-~---~~~v~v~~v~~g~~~~~~~l~~l~~~~ 155 (161)
T cd00198 80 TNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAAREL-R---KLGITVYTIGIGDDANEDELKEIADKT 155 (161)
T ss_pred ccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHH-H---HcCCEEEEEEcCCCCCHHHHHHHhccc
Confidence 99999999999998763 4567799999999987654 233333332 2 236999999999977889999999987
No 41
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=99.58 E-value=1.6e-14 Score=114.48 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=65.1
Q ss_pred CccccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehh
Q 007752 79 PALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLD 153 (591)
Q Consensus 79 ~~~~pL~~~~v~v~v~~~i~~a~v~~~~~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~ 153 (591)
...+||++.+|+.+|.|+. +.++++++|.| ++++++||.|+|||+|+++|+||++.|+||++++++++|.
T Consensus 9 ~~~LpL~~~~v~a~v~G~~--~~~ta~lty~N---~~~~plEg~f~fPL~e~~~V~gfea~i~gr~v~~~v~~rt 78 (78)
T PF13757_consen 9 RNPLPLQSSRVTACVNGYS--AGTTASLTYEN---PEDRPLEGVFVFPLDEGATVVGFEADIGGRIVTVQVQDRT 78 (78)
T ss_pred CCcceEEEeEEEEEEEccc--ccEEEEEEEEC---CCCCcEEEEEEEecCCCcEEEEEEEEeCCcEEEEEeeecC
Confidence 4569999999999999994 67999999999 7999999999999999999999999999999999999873
No 42
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.56 E-value=1.5e-13 Score=128.48 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=107.8
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCC-C
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-G 401 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~-G 401 (591)
+|++|+||.|+||....++.+|+.+..+++.+. ...+++++.|+++++.........+.+. .++.|+++... |
T Consensus 1 ~DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~---l~~~i~~i~~~~g 77 (165)
T cd01481 1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKAD---VLGAVRRLRLRGG 77 (165)
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHHH---HHHHHHhcccCCC
Confidence 489999999999998899999999999999885 3679999999999877655433344444 44456666654 4
Q ss_pred -CCchHHHHHHHHHHhhcC-------CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007752 402 -GTNILLPLKQAIKLLSDT-------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 402 -gT~l~~aL~~a~~~l~~~-------~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~ 473 (591)
+|+...||+.+.+.+... ++..+.+|++|||..++. +... .+.++ ..++.+|++|+|. .|...|+
T Consensus 78 ~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~--~~~~-a~~lr---~~gv~i~~vG~~~-~~~~eL~ 150 (165)
T cd01481 78 SQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDD--VERP-AVALK---RAGIVPFAIGARN-ADLAELQ 150 (165)
T ss_pred CcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcch--HHHH-HHHHH---HCCcEEEEEeCCc-CCHHHHH
Confidence 589999999988765332 123468999999997753 2222 22222 2359999999984 6889999
Q ss_pred HHHHhCC
Q 007752 474 ILAQIGR 480 (591)
Q Consensus 474 ~LA~~~~ 480 (591)
.||....
T Consensus 151 ~ias~p~ 157 (165)
T cd01481 151 QIAFDPS 157 (165)
T ss_pred HHhCCCc
Confidence 9998764
No 43
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.55 E-value=7.9e-14 Score=126.78 Aligned_cols=140 Identities=24% Similarity=0.387 Sum_probs=105.2
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC------CCeEEEEEeCCCceeeecccccCCHHHHHHHHHH-HhcCCC
Q 007752 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQW-LSSLVA 399 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~------~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~-i~~l~a 399 (591)
-++|++|+||||.|++|+.++..++.+++.|.. ...++||+|++.++...+.. + +.++ ...+.+
T Consensus 5 P~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~---~------~~nF~~p~L~a 75 (207)
T COG4245 5 PCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFT---D------AANFNPPILTA 75 (207)
T ss_pred CEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechh---h------HhhcCCCceec
Confidence 478999999999999999999999999999863 45799999999988765532 1 2221 125678
Q ss_pred CCCCchHHHHHHHHHHhhcC---------CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC-CCH
Q 007752 400 GGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-CNH 469 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~-~~~ 469 (591)
.|||.+++||+.+.+++... ...++.+||+|||.++|.-......... +.....++..+++|.. +|.
T Consensus 76 ~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~---~~~~~k~v~a~~~G~~~ad~ 152 (207)
T COG4245 76 QGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQ---GERRAKSVAAFSVGVQGADN 152 (207)
T ss_pred CCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhh---cccccceEEEEEeccccccc
Confidence 89999999999999998754 2456799999999997754322211111 2223356888888876 888
Q ss_pred HHHHHHHHh
Q 007752 470 YFLQILAQI 478 (591)
Q Consensus 470 ~lL~~LA~~ 478 (591)
..|++|++.
T Consensus 153 ~~L~qit~~ 161 (207)
T COG4245 153 KTLNQITEK 161 (207)
T ss_pred HHHHHHHHh
Confidence 889998764
No 44
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.54 E-value=1.3e-13 Score=133.31 Aligned_cols=147 Identities=21% Similarity=0.282 Sum_probs=108.2
Q ss_pred CceEEEEEeCCcCCCcc-------hHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHh
Q 007752 325 RKDVVFLVDVSGSMQGV-------LLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS 395 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~-------~i~~ak~al~~~l~~L~--~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~ 395 (591)
+++++|+||.||||... +++.+++++..++..+. +.|.++++.|++....+.+ .+ ...+.+.+.
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~~----~~---~~~v~~~~~ 74 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYDN----VN---SSKVDQLFA 74 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccCC----cC---HHHHHHHHh
Confidence 57999999999999853 79999999999888764 4678999999888754422 23 344445567
Q ss_pred cCCCCCCCchHHHHHHHHHHhhcCC----C--CccEEEEEecCCCCChhhHHHHHHHHHhcC-CCCCCeEEEEEcCCC-C
Q 007752 396 SLVAGGGTNILLPLKQAIKLLSDTS----E--SIPLIFLITDGTVGDERGICNEIKSYLTNT-RSISPRICTFGVGLY-C 467 (591)
Q Consensus 396 ~l~a~GgT~l~~aL~~a~~~l~~~~----~--~~~~IillTDG~~~~~~~~~~~v~~~~~~~-~~~~~~I~tiGiG~~-~ 467 (591)
++.+.|+|++..+|+.+++.+.... . ....||++|||.+++...+.+.+.+..... ...++.|++++||.+ .
T Consensus 75 ~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~ 154 (199)
T cd01457 75 ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDPA 154 (199)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcHH
Confidence 7888899999999998875443211 1 147899999999987766555555544321 113588999999986 4
Q ss_pred CHHHHHHHHHh
Q 007752 468 NHYFLQILAQI 478 (591)
Q Consensus 468 ~~~lL~~LA~~ 478 (591)
+..+|+.|+..
T Consensus 155 ~~~~L~~ld~~ 165 (199)
T cd01457 155 ATAFLKALDDQ 165 (199)
T ss_pred HHHHHHHHhHH
Confidence 67789999875
No 45
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.53 E-value=8.1e-14 Score=160.09 Aligned_cols=185 Identities=27% Similarity=0.335 Sum_probs=159.4
Q ss_pred CCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeee----cccccCCHHHHHHHHHHHhc
Q 007752 321 RKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS----SSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 321 ~~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~----~~~~~~~~~~~~~a~~~i~~ 396 (591)
....|++++|++|.||||.|.++..+|..+..+|+.|.++|.|++++|++.+.... ..+.+++..|++..++.++.
T Consensus 221 aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~~ 300 (1104)
T KOG2353|consen 221 AATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIET 300 (1104)
T ss_pred ccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999976443 45678999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCC---------CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC
Q 007752 397 LVAGGGTNILLPLKQAIKLLSDTS---------ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC 467 (591)
Q Consensus 397 l~a~GgT~l~~aL~~a~~~l~~~~---------~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~ 467 (591)
+.+.|-+++..|++.|++++.... .....|+++|||.+++...+++.... ....+|+|++-||...
T Consensus 301 l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn~-----~~~~Vrvftflig~~~ 375 (1104)
T KOG2353|consen 301 LDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKYNW-----PDKKVRVFTFLIGDEV 375 (1104)
T ss_pred hccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhhcc-----CCCceEEEEEEecccc
Confidence 998899999999999999997531 13457999999999888777765432 2466999999999753
Q ss_pred -CHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEee
Q 007752 468 -NHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTN 510 (591)
Q Consensus 468 -~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~~p~~~~ 510 (591)
+...++-+|..+.|.|..+.+.+++.......+.-+..|.+-.
T Consensus 376 ~~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~y~~vlsRp~vl~ 419 (1104)
T KOG2353|consen 376 YDLDEIQWMACANKGYYVHIISIADVRENVLEYLDVLSRPLVLQ 419 (1104)
T ss_pred cccccchhhhhhCCCceEeccchhhcChHhhhhhhhhccceeec
Confidence 4455899999999999999999999999999888888887655
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.52 E-value=3e-13 Score=152.12 Aligned_cols=159 Identities=23% Similarity=0.284 Sum_probs=116.5
Q ss_pred ccCceEEEEEeCCcCCCc-chHHHHHHHHHHHHH-hCCCCCeEEEEEeCCC-ceeeecccccCCHHHHHHHHHHHhcCCC
Q 007752 323 VFRKDVVFLVDVSGSMQG-VLLEQTKNALSASLS-KLNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g-~~i~~ak~al~~~l~-~L~~~d~~~Iv~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~a 399 (591)
.....++||||.||||.+ .++..+|.++..++. .+..+|+|+||.|+++ +....+.. .+...+...|..+..
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t-----~~~~~~~~~L~~l~~ 537 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPT-----SSVELAARRLEELPT 537 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCC-----CCHHHHHHHHHhCCC
Confidence 445689999999999987 499999999988876 4567899999999864 66544422 234445567888999
Q ss_pred CCCCchHHHHHHHHHHhhc----CCCCccEEEEEecCCCCCh---hhHHHHHHHHHhcCCCCCCeEEEEEcCCC-CCHHH
Q 007752 400 GGGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDE---RGICNEIKSYLTNTRSISPRICTFGVGLY-CNHYF 471 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~---~~~~~~v~~~~~~~~~~~~~I~tiGiG~~-~~~~l 471 (591)
+|+|+|..||..|++.+.. .+.....|||+|||..+.. ....+.+..........++.+++|+.+.. ....+
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~~~~~~~ 617 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESGFVRLGL 617 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCCcchhH
Confidence 9999999999999998873 3345679999999998652 11112222111211233578888887653 45779
Q ss_pred HHHHHHhCCCEEEEc
Q 007752 472 LQILAQIGRGYYDSA 486 (591)
Q Consensus 472 L~~LA~~~~G~~~~v 486 (591)
++.||+.+||.|+.+
T Consensus 618 ~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 618 AEDLARALGGEYVRL 632 (633)
T ss_pred HHHHHHhhCCeEEec
Confidence 999999999999875
No 47
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.36 E-value=4.2e-11 Score=113.11 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=112.5
Q ss_pred eEEEEEeCCcCCCc-----chHHHHHHHHHHHHH---hCCCCCeEEEEEeCC-CceeeecccccCCHHHHHHHHHHHhcC
Q 007752 327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLS---KLNPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSSL 397 (591)
Q Consensus 327 ~vvfviD~SgSM~g-----~~i~~ak~al~~~l~---~L~~~d~~~Iv~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~l 397 (591)
-++|+||.|.||.. .+++.+|+++..++. ...++++++|+.|++ .+....+.+ .+ ...++..++.+
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT--~D---~~~~~~~L~~i 79 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLT--ND---QGKILSKLHDV 79 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCC--CC---HHHHHHHHHhC
Confidence 47899999999975 599999999988752 235678999999999 787766543 23 44556667778
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCC--C-ccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC-CCHHHHH
Q 007752 398 VAGGGTNILLPLKQAIKLLSDTSE--S-IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-CNHYFLQ 473 (591)
Q Consensus 398 ~a~GgT~l~~aL~~a~~~l~~~~~--~-~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~-~~~~lL~ 473 (591)
.++|+|++..||+.|...+...+. . .+.|+|++++...++..+.+.+++..+ .+++|++||+|.. .|...|+
T Consensus 80 ~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk----~~I~v~vI~~G~~~~~~~~l~ 155 (187)
T cd01452 80 QPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKK----NNVSVDIINFGEIDDNTEKLT 155 (187)
T ss_pred CCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHH----cCCeEEEEEeCCCCCCHHHHH
Confidence 888999999999999999975533 3 366777777765666666666665543 3599999999964 4667777
Q ss_pred HHHHhCC----CEEEEcCCCC
Q 007752 474 ILAQIGR----GYYDSAYDPG 490 (591)
Q Consensus 474 ~LA~~~~----G~~~~v~~~~ 490 (591)
.+.+.-+ -++..+....
T Consensus 156 ~~~~~~~~~~~s~~~~~~~~~ 176 (187)
T cd01452 156 AFIDAVNGKDGSHLVSVPPGE 176 (187)
T ss_pred HHHHHhcCCCCceEEEeCCCC
Confidence 7766542 3344455443
No 48
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.31 E-value=9.7e-11 Score=110.37 Aligned_cols=158 Identities=19% Similarity=0.235 Sum_probs=112.1
Q ss_pred eEEEEEeCCcCCCcc----hHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHh-c---CC
Q 007752 327 DVVFLVDVSGSMQGV----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-S---LV 398 (591)
Q Consensus 327 ~vvfviD~SgSM~g~----~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~---l~ 398 (591)
.|++|||.||||++. ..+.+.+-+..+-..|.++-.+.++.|+++...+. ..+.++...-++.+. + +.
T Consensus 3 rV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~----~vt~~~~~~~v~~~~~~~~~~~ 78 (200)
T PF10138_consen 3 RVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLP----DVTLDNYEGYVDELHAGLPDWG 78 (200)
T ss_pred EEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCC----CcCHHHHHHHHHHHhccccccC
Confidence 689999999999863 45555555555556787777899999999987653 356666666555443 2 24
Q ss_pred CCCCCchHHHHHHHHHHhhcC-C-CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007752 399 AGGGTNILLPLKQAIKLLSDT-S-ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (591)
Q Consensus 399 a~GgT~l~~aL~~a~~~l~~~-~-~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA 476 (591)
..|+|+...+|+.+++..... + ..+..|+++|||.+++...+.+.+++. ....+-+--+|||.. +..+|++|.
T Consensus 79 ~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~a----s~~pifwqFVgiG~~-~f~fL~kLD 153 (200)
T PF10138_consen 79 RMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREA----SDEPIFWQFVGIGDS-NFGFLEKLD 153 (200)
T ss_pred CCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhc----cCCCeeEEEEEecCC-cchHHHHhh
Confidence 458899999999999987643 2 234589999999999887777666655 233455667899987 588999998
Q ss_pred HhC-----CCEEEEcCCCCchH
Q 007752 477 QIG-----RGYYDSAYDPGSVD 493 (591)
Q Consensus 477 ~~~-----~G~~~~v~~~~~l~ 493 (591)
... +..++.+.+.+++.
T Consensus 154 ~l~gR~vDNa~Ff~~~d~~~ls 175 (200)
T PF10138_consen 154 DLAGRVVDNAGFFAIDDIDELS 175 (200)
T ss_pred ccCCcccCCcCeEecCCcccCC
Confidence 852 22345566655443
No 49
>PRK10997 yieM hypothetical protein; Provisional
Probab=99.25 E-value=1.7e-10 Score=123.27 Aligned_cols=144 Identities=18% Similarity=0.168 Sum_probs=106.7
Q ss_pred CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCC
Q 007752 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLS-KLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 322 ~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~-~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~ 400 (591)
......++++||+||||.|.+...||..+..+.. .+..+++++++.|++....+ +. .....+.++.+++... .+
T Consensus 320 ~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~-~l---~~~~gl~~ll~fL~~~-f~ 394 (487)
T PRK10997 320 EQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTY-EL---TGPDGLEQAIRFLSQS-FR 394 (487)
T ss_pred CCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceee-cc---CCccCHHHHHHHHHHh-cC
Confidence 3467899999999999999888888875555443 56789999999999987653 11 2345677788888643 58
Q ss_pred CCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007752 401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~-~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~ 473 (591)
|||++..+|+.+++.+....-....||++||+.... +.+..+.++...+. .+.++|++.+|...+..+++
T Consensus 395 GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~---~~~rf~~l~i~~~~~p~l~~ 465 (487)
T PRK10997 395 GGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQ---HQHRFHAVAMSAHGKPGIMR 465 (487)
T ss_pred CCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHh---cCcEEEEEEeCCCCCchHHH
Confidence 999999999999999876433445899999998643 44555555554332 35899999999876766543
No 50
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.23 E-value=5.2e-11 Score=124.75 Aligned_cols=146 Identities=23% Similarity=0.258 Sum_probs=107.2
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHH-hCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCc
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLS-KLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~-~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~ 404 (591)
..|++|||.||||.|.+.+.||..+..++. .|..+-++-++.|++.+..... ..-..++.++++++...-++| ||
T Consensus 273 GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el---~~k~~~~~e~i~fL~~~f~GG-TD 348 (437)
T COG2425 273 GPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYEL---YEKKIDIEELIEFLSYVFGGG-TD 348 (437)
T ss_pred CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeee---cCCccCHHHHHHHHhhhcCCC-CC
Confidence 779999999999999999999977666664 5667778999999995543321 122337888988887655555 99
Q ss_pred hHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007752 405 ILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~ 479 (591)
+..||..|++.+++..-...-+|+||||...-.......+.+..+ ..+.++|++-||.+... -|.+++...
T Consensus 349 ~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~~~~~~~~v~e~~k---~~~~rl~aV~I~~~~~~-~l~~Isd~~ 419 (437)
T COG2425 349 ITKALRSALEDLKSRELFKADIVVITDGEDERLDDFLRKVKELKK---RRNARLHAVLIGGYGKP-GLMRISDHI 419 (437)
T ss_pred hHHHHHHHHHHhhcccccCCCEEEEeccHhhhhhHHHHHHHHHHH---HhhceEEEEEecCCCCc-ccceeeeee
Confidence 999999999999876544568999999997544444444444432 34589999999987433 455565544
No 51
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.23 E-value=4.2e-10 Score=112.06 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=114.4
Q ss_pred cCceEEEEEeCCcCCCcc-----hHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC
Q 007752 324 FRKDVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~-----~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..-+++|+||.|.||... .++ +|..+..+++.|. .++++|+.|++++....|...+.+ . +.+.+.++.+.
T Consensus 59 r~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le-~g~vgVv~Fg~~~~~v~Plt~d~~--~-~a~~~~l~~~~ 133 (266)
T cd01460 59 RDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLE-VGQLGVCSFGEDVQILHPFDEQFS--S-QSGPRILNQFT 133 (266)
T ss_pred cCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCc-CCcEEEEEeCCCceEeCCCCCCch--h-hHHHHHhCccc
Confidence 356899999999999752 344 7777888888776 579999999999988776554333 2 45556666555
Q ss_pred CC-CCCchHHHHHHHHHHhhcC---C-CC--ccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCCC-CH
Q 007752 399 AG-GGTNILLPLKQAIKLLSDT---S-ES--IPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLYC-NH 469 (591)
Q Consensus 399 a~-GgT~l~~aL~~a~~~l~~~---~-~~--~~~IillTDG~~~~~-~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~-~~ 469 (591)
.. ++|++..+|..+.+.+... . .. .+.+|++|||...+. ......+++..+ .++.++.|++-+.. +.
T Consensus 134 f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e----~~i~l~~I~ld~~~~~~ 209 (266)
T cd01460 134 FQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREARE----QNVFVVFIIIDNPDNKQ 209 (266)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHH----cCCeEEEEEEcCCCCCC
Confidence 55 9999999999999998754 1 11 279999999994322 222222444432 35899999986541 11
Q ss_pred ----------------HHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007752 470 ----------------YFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 470 ----------------~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~ 502 (591)
.+-+.+-...--.|..+.|.++++..+..++.+
T Consensus 210 SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~~~~~~lp~~l~~~lrq 258 (266)
T cd01460 210 SILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVRDLNQLPSVLSDALRQ 258 (266)
T ss_pred CcccccccccCCCCccHHHHHHhcCCCCeEEEecChhHhHHHHHHHHHH
Confidence 122333344455566677777777776666554
No 52
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.09 E-value=2.9e-09 Score=104.44 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=97.8
Q ss_pred eEEEEEeCCcCCC-------cchHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCce----------eeecccccCCHHH
Q 007752 327 DVVFLVDVSGSMQ-------GVLLEQTKNALSASLSK---LNPQDSFNIIAFNGETH----------LFSSSMKLASQGT 386 (591)
Q Consensus 327 ~vvfviD~SgSM~-------g~~i~~ak~al~~~l~~---L~~~d~~~Iv~F~~~~~----------~~~~~~~~~~~~~ 386 (591)
.++|+||+|.||. ..+++.+++++..++++ -.++|+++|+.|+++.. .+.+ +...+.+.
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~-l~~~~~~~ 81 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLD-LDTPGAER 81 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeec-CCCCCHHH
Confidence 5899999999994 26899999999999997 37899999999999742 1222 22345566
Q ss_pred HHHHHHHHhcC--------CCCCCCchHHHHHHHHHHhhc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCC
Q 007752 387 IINATQWLSSL--------VAGGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSI 454 (591)
Q Consensus 387 ~~~a~~~i~~l--------~a~GgT~l~~aL~~a~~~l~~--~~~~~~~IillTDG~~~~~--~~~~~~v~~~~~~~~~~ 454 (591)
++...+.++.- ...++|++..||..|.+++.. .....+.|||+|||..... ....+.+...+......
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~ 161 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK 161 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 66665554421 134789999999999999975 2345689999999986421 11122222223333345
Q ss_pred CCeEEEEEcCCCC
Q 007752 455 SPRICTFGVGLYC 467 (591)
Q Consensus 455 ~~~I~tiGiG~~~ 467 (591)
++.|++||+|...
T Consensus 162 gI~i~~i~i~~~~ 174 (218)
T cd01458 162 GIELELFPLSSPG 174 (218)
T ss_pred CcEEEEEecCCCC
Confidence 7999999998754
No 53
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=99.06 E-value=2.7e-09 Score=101.35 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=106.0
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCc-------eeeecccccCCHHHHHHHHHHHh
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGET-------HLFSSSMKLASQGTIINATQWLS 395 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~~~Iv~F~~~~-------~~~~~~~~~~~~~~~~~a~~~i~ 395 (591)
...-|.|+||+||||.|.+++.+..++..+.+.|. -+..+.|+.|.+.. +.|...-.+..+.-+.+....+.
T Consensus 11 ~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~vy 90 (219)
T PF11775_consen 11 RDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIVY 90 (219)
T ss_pred CCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHHH
Confidence 34567899999999999999988766555555554 36788899998873 12221111222222222222221
Q ss_pred ----------------cCCCC-CCCch-HHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-------hH-HHHHHHHHh
Q 007752 396 ----------------SLVAG-GGTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-------GI-CNEIKSYLT 449 (591)
Q Consensus 396 ----------------~l~a~-GgT~l-~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-------~~-~~~v~~~~~ 449 (591)
-++.+ ...|+ +.||.+|.+.+.+.+...+.++++|||.|.+.. .. ...+++.++
T Consensus 91 k~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~ 170 (219)
T PF11775_consen 91 KDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIA 170 (219)
T ss_pred HhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHH
Confidence 01222 23444 689999999998888888999999999996321 12 222233333
Q ss_pred cCC-CCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHh
Q 007752 450 NTR-SISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 450 ~~~-~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~ 503 (591)
... ..++.+.+||||.++..+. -.+..+.+.+++...+...+.++
T Consensus 171 ~ie~~~~Vel~aiGIg~D~~~yY---------~~~~~i~~~e~l~~~~~~~l~~l 216 (219)
T PF11775_consen 171 EIETRSDVELIAIGIGHDVSRYY---------RRAVTIDDVEELGGALFEQLARL 216 (219)
T ss_pred HHhccCCcEEEEEEcCCCchhhc---------ccceecCCHHHHHHHHHHHHHHH
Confidence 222 2458899999998754422 12345777788887777766654
No 54
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.85 E-value=4.7e-08 Score=96.00 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=80.2
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHh--cCCCC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS--SLVAG 400 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~--~l~a~ 400 (591)
..|..+++|+|+||||.+-. ..+-..+..+.... .++.++.|+++.....+.....+ ..+++..+. ....+
T Consensus 55 ~~~~~lvvl~DvSGSM~~~s-~~~l~~~~~l~~~~---~~~~~f~F~~~l~~vT~~l~~~~---~~~~l~~~~~~~~~~~ 127 (222)
T PF05762_consen 55 RKPRRLVVLCDVSGSMAGYS-EFMLAFLYALQRQF---RRVRVFVFSTRLTEVTPLLRRRD---PEEALARLSALVQSFG 127 (222)
T ss_pred CCCccEEEEEeCCCChHHHH-HHHHHHHHHHHHhC---CCEEEEEEeeehhhhhhhhccCC---HHHHHHHHHhhccCCC
Confidence 34569999999999998621 11222233333333 37899999998765543332122 223333333 23367
Q ss_pred CCCchHHHHHHHHHHhhcCCCCccEEEEEecCCC-CChhhHHHHHHHHHhcCCCCCCeEEEEE
Q 007752 401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTV-GDERGICNEIKSYLTNTRSISPRICTFG 462 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~-~~~~~~~~~v~~~~~~~~~~~~~I~tiG 462 (591)
|||+|..+|+.+.+......-....+|++|||.. ++.....+.+++.... ..+++.+.
T Consensus 128 GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r----~~rviwLn 186 (222)
T PF05762_consen 128 GGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRR----GRRVIWLN 186 (222)
T ss_pred CccHHHHHHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHh----CCEEEEEC
Confidence 9999999999999987632224568999999954 4445555555555433 36777764
No 55
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.76 E-value=4.7e-08 Score=105.18 Aligned_cols=171 Identities=19% Similarity=0.230 Sum_probs=102.8
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCce-------eeecccccCCHHHHHH------
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETH-------LFSSSMKLASQGTIIN------ 389 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~~~Iv~F~~~~~-------~~~~~~~~~~~~~~~~------ 389 (591)
...-|.|+||+||||.+.++..|+..+..+.+.|. .+..+-|+.|.+.+. .|...-.+..+.-+..
T Consensus 391 ~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~l~hiiy 470 (600)
T TIGR01651 391 RDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLNDLRHIIY 470 (600)
T ss_pred CCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCCcccchhhhhhh
Confidence 44568899999999999888877655555555553 367889999987631 1211111111111111
Q ss_pred ---------HHHHHhc-CCCC-CCCch-HHHHHHHHHHhhcCCCCccEEEEEecCCCCChhh--------HHHHHHHHHh
Q 007752 390 ---------ATQWLSS-LVAG-GGTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDERG--------ICNEIKSYLT 449 (591)
Q Consensus 390 ---------a~~~i~~-l~a~-GgT~l-~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~--------~~~~v~~~~~ 449 (591)
+...+.. +..+ ..-|+ +.||.+|.+.|..++...+.+++||||.|.+... ....++..+.
T Consensus 471 k~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~ 550 (600)
T TIGR01651 471 KSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIE 550 (600)
T ss_pred hccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHH
Confidence 1111110 0111 11122 7899999999988888889999999999964221 2222333333
Q ss_pred cCCC-CCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHh
Q 007752 450 NTRS-ISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 450 ~~~~-~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~ 503 (591)
.... .++.+.+||||.++..++ ..+..|.+.++|..+|.+-|..+
T Consensus 551 ~~e~~~~vel~aigIg~Dv~r~Y---------~~~v~i~~~~eL~~~~~~qLa~L 596 (600)
T TIGR01651 551 EIETRSPVELLAIGIGHDVTRYY---------RRAVTIVDAEELAGAMTEQLAAL 596 (600)
T ss_pred HHhccCCceEEEeeccccHHHHc---------cccceecCHHHHHHHHHHHHHHH
Confidence 2223 369999999999854433 23346777788877776655543
No 56
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=98.71 E-value=4.7e-07 Score=85.62 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=118.3
Q ss_pred EEeCCcCCCc-----chHHHHHHHHHHHHHhC---CCCCeEEEEEeCCC-ceeeecccccCCHHHHHHHHHHHhcCCCCC
Q 007752 331 LVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVAGG 401 (591)
Q Consensus 331 viD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~a~G 401 (591)
|||.|.+|.. +++....+++..|+... +|-.+++|+...+. ++.+.+. ..+....-+++..+....+.|
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~l--sgn~~~h~~~L~~~~~~~~~G 78 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSEL--SGNPQEHIEALKKLRKLEPSG 78 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeec--CCCHHHHHHHHHHhccCCCCC
Confidence 6899999975 57777888887777654 56679999999876 4555432 245666666666666667889
Q ss_pred CCchHHHHHHHHHHhhcCC-CCccEEEEEecCCC-CChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007752 402 GTNILLPLKQAIKLLSDTS-ESIPLIFLITDGTV-GDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~~~-~~~~~IillTDG~~-~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~ 479 (591)
...|..||+.|...+...+ ...|.|+++.-... .|+.++.+.+....+ .++|+..||++.. -+.++.|++.|
T Consensus 79 ~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~----~~IrvsvI~laaE--v~I~k~i~~~T 152 (193)
T PF04056_consen 79 EPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKK----ENIRVSVISLAAE--VYICKKICKET 152 (193)
T ss_pred ChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHH----cCCEEEEEEEhHH--HHHHHHHHHhh
Confidence 9999999999999998654 23456666653333 356666666665543 3599999999874 56899999999
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhccce
Q 007752 480 RGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 480 ~G~~~~v~~~~~l~~~l~~~l~~~~~p~ 507 (591)
+|.|..+-|.+. +.+++.....|.
T Consensus 153 ~G~y~V~lde~H----~~~lL~~~~~PP 176 (193)
T PF04056_consen 153 GGTYGVILDEDH----FKELLMEHVPPP 176 (193)
T ss_pred CCEEEEecCHHH----HHHHHHhhCCCC
Confidence 999998887654 445555555543
No 57
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.62 E-value=1.1e-06 Score=89.50 Aligned_cols=159 Identities=24% Similarity=0.320 Sum_probs=112.1
Q ss_pred ccCceEEEEEeCCcCCC--c--chHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC
Q 007752 323 VFRKDVVFLVDVSGSMQ--G--VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~--g--~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
.....+++++|+|-||- | .++.+..-|+..++..--++|.+.+|.|+..++.. +... +..+.
T Consensus 461 rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v-------~v~e-------Lt~l~ 526 (652)
T COG4867 461 RTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTV-------TAAE-------LTGLA 526 (652)
T ss_pred hcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhccc-------CHHH-------HhcCC
Confidence 34567899999999995 3 45566666666777776789999999999988653 2111 22333
Q ss_pred C--CCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC-----------------ChhhHHHHHHHHHhcCCCCCCeEE
Q 007752 399 A--GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-----------------DERGICNEIKSYLTNTRSISPRIC 459 (591)
Q Consensus 399 a--~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~-----------------~~~~~~~~v~~~~~~~~~~~~~I~ 459 (591)
. .-|||+..||..|-..+...++..++|+++|||+++ ++..+...+++. .+....++.|.
T Consensus 527 ~v~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~-d~~~r~G~q~t 605 (652)
T COG4867 527 GVYEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGF-DDMARLGAQVT 605 (652)
T ss_pred CccccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHH-HHHHhccceee
Confidence 2 268999999999999998777788899999999985 122333344332 22223456677
Q ss_pred EEEcCCCCC-HHHHHHHHHhCCCEEEEcCCCCchHHHHH
Q 007752 460 TFGVGLYCN-HYFLQILAQIGRGYYDSAYDPGSVDYRIR 497 (591)
Q Consensus 460 tiGiG~~~~-~~lL~~LA~~~~G~~~~v~~~~~l~~~l~ 497 (591)
+|-+|.+.. ..|+.++|+..+|..++ .+.+.+-..+.
T Consensus 606 ~FrLg~DpgL~~Fv~qva~rv~G~vv~-pdldglGaaVv 643 (652)
T COG4867 606 IFRLGSDPGLARFIDQVARRVQGRVVV-PDLDGLGAAVV 643 (652)
T ss_pred EEeecCCHhHHHHHHHHHHHhCCeEEe-cCcchhhHHHH
Confidence 777777544 45899999999999986 56666655443
No 58
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=98.59 E-value=2.8e-07 Score=82.02 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=66.6
Q ss_pred EEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCchHH
Q 007752 328 VVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILL 407 (591)
Q Consensus 328 vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l~~ 407 (591)
++++||+||||....+.+.-..+..+++.. +.++.|+.|+..++..... .. .......+ .+..+|||++..
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----~~--~~~~~~~~-~~~GgGGTdf~p 71 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----RS--LEDELRDI-KLKGGGGTDFRP 71 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----ec--cccccccc-ccCCCCCCcchH
Confidence 478999999999877776666666777776 4579999999998753221 11 11111111 456679999999
Q ss_pred HHHHHHHHhhcCCCCccEEEEEecCCCCC
Q 007752 408 PLKQAIKLLSDTSESIPLIFLITDGTVGD 436 (591)
Q Consensus 408 aL~~a~~~l~~~~~~~~~IillTDG~~~~ 436 (591)
+++++.+. ......+|++|||....
T Consensus 72 vf~~~~~~----~~~~~~vi~fTDg~~~~ 96 (126)
T PF09967_consen 72 VFEYLEEN----RPRPSVVIYFTDGEGWP 96 (126)
T ss_pred HHHHHHhc----CCCCCEEEEEeCCCCCC
Confidence 99987664 23456788999999743
No 59
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=98.56 E-value=2.2e-07 Score=97.42 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=122.5
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHH-------HHHHHHHhCC-CCCeEEEEEeCCCceeee--cccccCCHHHHHHHHHH
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKN-------ALSASLSKLN-PQDSFNIIAFNGETHLFS--SSMKLASQGTIINATQW 393 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~-------al~~~l~~L~-~~d~~~Iv~F~~~~~~~~--~~~~~~~~~~~~~a~~~ 393 (591)
...-+.+++|+|-||.. +++..|. ++..+-..+. -++...+..|.+..+.|. .....++.......-..
T Consensus 445 ~Dla~TLLvD~S~St~a-~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~R 523 (637)
T COG4548 445 HDLAFTLLVDVSASTDA-KMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPR 523 (637)
T ss_pred ccceeEEEeecccchHH-HhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccchh
Confidence 44568899999999974 5555444 4444333332 377888888988765532 22233333333444455
Q ss_pred HhcCCCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-----hHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 394 LSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-----GICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 394 i~~l~a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-----~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
|..++++-.|.++.||+.|.+.+-..+...+.+|++|||.+++-. .-+..-++++....+.++.+|+|-+....-
T Consensus 524 ImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld~ea~ 603 (637)
T COG4548 524 IMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLDREAI 603 (637)
T ss_pred heecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEecchhh
Confidence 778899999999999999999998888888999999999997432 122233444444445679999998877644
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007752 469 HYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 469 ~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~ 504 (591)
.++ - +..+.+.|.+|.+...++..+-.+++++.
T Consensus 604 ~y~-p--~~fgqngYa~V~~v~~LP~~L~~lyrkL~ 636 (637)
T COG4548 604 SYL-P--ALFGQNGYAFVERVAQLPGALPPLYRKLL 636 (637)
T ss_pred hhh-H--HHhccCceEEccchhhcchhHHHHHHHhc
Confidence 332 2 34566778889999999999998888753
No 60
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.45 E-value=6.3e-06 Score=88.29 Aligned_cols=169 Identities=24% Similarity=0.295 Sum_probs=127.5
Q ss_pred CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhc-CCCC
Q 007752 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS-LVAG 400 (591)
Q Consensus 322 ~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~-l~a~ 400 (591)
...+.+.++++|+||||.+..+..++.+...++..+.+.+.+.++.|........+.....+. ..+...|.. +.+.
T Consensus 34 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~ 110 (399)
T COG2304 34 LLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTGATNK---ESITAAIDQSLQAG 110 (399)
T ss_pred cccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCcccccCH---HHHHHHHhhhhccc
Confidence 457899999999999999988999999999999999999999999999966554443222333 444455664 7888
Q ss_pred CCCchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHh
Q 007752 401 GGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI 478 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~ 478 (591)
|.|.+..++..+.+.+... .+....+.+.|||..+........+..........++.+.++|+|.+.|..++..++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~n~~~~~~~~~~ 190 (399)
T COG2304 111 GATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDVNEDELTGIAAA 190 (399)
T ss_pred cccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEecccccchhhhhhhhhc
Confidence 9999999999999987653 45567899999998753211122222222222335689999999999999999999999
Q ss_pred CCCEEEEcCCCCchH
Q 007752 479 GRGYYDSAYDPGSVD 493 (591)
Q Consensus 479 ~~G~~~~v~~~~~l~ 493 (591)
+.|...++.......
T Consensus 191 ~~g~l~~~~~~~~~~ 205 (399)
T COG2304 191 ANGNLAFIYLSSLSE 205 (399)
T ss_pred cCcccccccCccccc
Confidence 988888877665444
No 61
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=98.40 E-value=2.6e-06 Score=90.05 Aligned_cols=173 Identities=20% Similarity=0.261 Sum_probs=115.3
Q ss_pred EEEEEeCCcCCCc------chHHHHHHHHHHHHHhCC-----CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhc
Q 007752 328 VVFLVDVSGSMQG------VLLEQTKNALSASLSKLN-----PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 328 vvfviD~SgSM~g------~~i~~ak~al~~~l~~L~-----~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
+.|++|+||||.. .-++.||.|+..|++.-. -+||+-+++|..-.+...- .-.++-.-.++-|++
T Consensus 4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~----~~~~~~a~~~~eik~ 79 (888)
T KOG3768|consen 4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKV----ACEKLGAVVIEEIKK 79 (888)
T ss_pred EEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhh----HHhhcccHHHHHHHh
Confidence 6799999999985 478999999999997532 3799999999887644321 112333445667888
Q ss_pred CCCC-CCCchHHHHHHHHHHhhcC----------CCC------ccEEEEEecCCC-CChhhH--------------HHHH
Q 007752 397 LVAG-GGTNILLPLKQAIKLLSDT----------SES------IPLIFLITDGTV-GDERGI--------------CNEI 444 (591)
Q Consensus 397 l~a~-GgT~l~~aL~~a~~~l~~~----------~~~------~~~IillTDG~~-~~~~~~--------------~~~v 444 (591)
+.+. |.+.+..++..|++++.-+ .++ .-.||+||||.- +....+ .+..
T Consensus 80 l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~pGse~T 159 (888)
T KOG3768|consen 80 LHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFPGSEMT 159 (888)
T ss_pred hcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEeccCCCCCccccc
Confidence 9998 5666777888899988532 111 237899999931 100000 0111
Q ss_pred HHHHhcCCCCCCeEEEEEc---C-----------CCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceE
Q 007752 445 KSYLTNTRSISPRICTFGV---G-----------LYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFL 508 (591)
Q Consensus 445 ~~~~~~~~~~~~~I~tiGi---G-----------~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~~p~~ 508 (591)
++ .-+.+-|+|++-+ | -..|...++.|.+.+||+.+.+.+...+.+.++.++++...-++
T Consensus 160 ke----pFRWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~Spr~lnqciesLvqkvQ~gVv 233 (888)
T KOG3768|consen 160 KE----PFRWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVVSPRQLNQCIESLVQKVQYGVV 233 (888)
T ss_pred cc----cchhhhhhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeeeeCHHHHHHHHHHHHHhhccCeE
Confidence 11 1112245666543 2 12456678999999999999999998888888888877554433
No 62
>PRK05325 hypothetical protein; Provisional
Probab=98.34 E-value=7.9e-06 Score=85.44 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=107.1
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC-CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCc
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~ 404 (591)
-=+++++|+||||...+-+.||.....+-.-|.- -.++-++.-.++...+ .++.+. .=.....|||-
T Consensus 223 AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~Ak-----EVdEee-------FF~~~esGGT~ 290 (401)
T PRK05325 223 AVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAK-----EVDEEE-------FFYSRESGGTI 290 (401)
T ss_pred EEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCcee-----EcCHHH-------ccccCCCCCeE
Confidence 3466889999999998888888876555454542 3567777666665442 233322 11346679999
Q ss_pred hHHHHHHHHHHhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCCCC--CHHHHHHHH
Q 007752 405 ILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYC--NHYFLQILA 476 (591)
Q Consensus 405 l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~~~~~v~~~~~~~~~~~~~I~tiG-iG~~~--~~~lL~~LA 476 (591)
+..|++.+.+++... ..++-.++-.|||..+ |...+.+.+++.+-.. ++.|+.+ |+... +..+.+...
T Consensus 291 vSSA~~l~~eIi~~rYpp~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp~----~~~f~Y~Ev~~~~~~~~~l~~~y~ 366 (401)
T PRK05325 291 VSSAYKLALEIIEERYPPAEWNIYAFQASDGDNWSSDNPRCVELLREELLPV----CNYFAYIEVTPRAYRHQTLWREYE 366 (401)
T ss_pred ehHHHHHHHHHHHhhCCHhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHHH----hhheEEEEecCCCCCchHHHHHHH
Confidence 999999999999763 3455688999999975 4455666666443221 4566654 44433 455666665
Q ss_pred HhCCC----EEEEcCCCCchHHHHHHHHHH
Q 007752 477 QIGRG----YYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 477 ~~~~G----~~~~v~~~~~l~~~l~~~l~~ 502 (591)
..... ....+.+.+++...|..+|.+
T Consensus 367 ~i~~~~~~f~~~~I~~~~dIyp~~r~lf~k 396 (401)
T PRK05325 367 RLQDTFPNFAMQRIRDKEDIYPVFRELFKK 396 (401)
T ss_pred HhhccCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 54443 446678889999998888854
No 63
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.27 E-value=4.4e-05 Score=75.98 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=106.7
Q ss_pred cCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCceeeecccc-----------------cC-
Q 007752 324 FRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSSMK-----------------LA- 382 (591)
Q Consensus 324 ~p~~vvfviD~SgS-M~g~~i~~ak~al~~~l~~L~--~~d~~~Iv~F~~~~~~~~~~~~-----------------~~- 382 (591)
.|.-++||||+|.. ....-++.+++++...|+.|+ ++.+|+||+|++.+..+.-... +.
T Consensus 2 ~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~ 81 (239)
T cd01468 2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLP 81 (239)
T ss_pred CCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCc
Confidence 46779999999974 445578999999999999999 8999999999988754321100 00
Q ss_pred ---------CHHHHHHHHHHHhcCC-----CCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCCh-----------
Q 007752 383 ---------SQGTIINATQWLSSLV-----AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE----------- 437 (591)
Q Consensus 383 ---------~~~~~~~a~~~i~~l~-----a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~----------- 437 (591)
..+.+.++++.|.... ...+..++.||+.|..++.... ..-.|++++.|.++-+
T Consensus 82 ~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~gGkI~~f~sg~pt~GpG~l~~~~~~~ 160 (239)
T cd01468 82 DRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF-AGGRIIVFQGGLPTVGPGKLKSREDKE 160 (239)
T ss_pred CceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC-CCceEEEEECCCCCCCCCccccCcccc
Confidence 0123444444444332 2256789999999999997642 2346888888887511
Q ss_pred --------------hhHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHHHHHHHhCCCEEEEcCCC
Q 007752 438 --------------RGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFLQILAQIGRGYYDSAYDP 489 (591)
Q Consensus 438 --------------~~~~~~v~~~~~~~~~~~~~I~tiGiG~-~~~~~lL~~LA~~~~G~~~~v~~~ 489 (591)
....+.+...+. ..++.+..|..+. .++-..|..|++.|||..++..+.
T Consensus 161 ~~~~~~e~~~~~~a~~fY~~la~~~~---~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f 224 (239)
T cd01468 161 PIRSHDEAQLLKPATKFYKSLAKECV---KSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSF 224 (239)
T ss_pred cCCCccchhcccccHHHHHHHHHHHH---HcCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCC
Confidence 011122222222 2335555555543 468888999999999999887765
No 64
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=98.26 E-value=3.2e-05 Score=76.91 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=102.2
Q ss_pred CceEEEEEeCCcCCC---------------cchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCcee---eeccc-------
Q 007752 325 RKDVVFLVDVSGSMQ---------------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHL---FSSSM------- 379 (591)
Q Consensus 325 p~~vvfviD~SgSM~---------------g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~---~~~~~------- 379 (591)
..++++-||.++|-. ....++|.+++-.++....++..|-++.|+..... .....
T Consensus 31 ~~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p 110 (254)
T cd01459 31 ESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESP 110 (254)
T ss_pred eeeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCC
Confidence 346777777777642 24677888888888888888889999999986421 11110
Q ss_pred ccCCHHHH-HHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCC
Q 007752 380 KLASQGTI-INATQWLSSLVAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISP 456 (591)
Q Consensus 380 ~~~~~~~~-~~a~~~i~~l~a~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~ 456 (591)
....-+.+ +.-.+.+.++...|.|++...|+.+.+....... ..-.++++|||..++..++.+.+.++- ...+
T Consensus 111 ~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS----~~Pl 186 (254)
T cd01459 111 ECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNETIKAIVEAS----KYPL 186 (254)
T ss_pred cccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCcccHHHHHHHHHHHh----cCCe
Confidence 00011222 2223345577888999999999999887764322 244689999999999887777766552 3457
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007752 457 RICTFGVGLYCNHYFLQILAQ 477 (591)
Q Consensus 457 ~I~tiGiG~~~~~~lL~~LA~ 477 (591)
.|..||+|+. +...|+.|-.
T Consensus 187 SIiiVGVGd~-~F~~M~~LD~ 206 (254)
T cd01459 187 SIVIVGVGDG-PFDAMERLDD 206 (254)
T ss_pred EEEEEEeCCC-ChHHHHHhcC
Confidence 8888999976 8888888865
No 65
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=98.24 E-value=2.1e-05 Score=77.81 Aligned_cols=169 Identities=15% Similarity=0.249 Sum_probs=116.8
Q ss_pred cCceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCc-eeeecccccCCHHHHHHHHHHH
Q 007752 324 FRKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWL 394 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~-~~~~~~~~~~~~~~~~~a~~~i 394 (591)
.=+.+++|||.|.+|.. .++......+..|+... +|-.+++||.--+.. ..+.. ...+. +.-++.+
T Consensus 59 iiRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~--ltgnp---~~hI~aL 133 (378)
T KOG2807|consen 59 IIRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTD--LTGNP---RIHIHAL 133 (378)
T ss_pred hheeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHH--hcCCH---HHHHHHH
Confidence 45789999999999986 35555566666666554 455688998887653 33221 11233 3334445
Q ss_pred hcCC-CCCCCchHHHHHHHHHHhhcCCCCc-c-EEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007752 395 SSLV-AGGGTNILLPLKQAIKLLSDTSESI-P-LIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (591)
Q Consensus 395 ~~l~-a~GgT~l~~aL~~a~~~l~~~~~~~-~-~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~l 471 (591)
..+. ..|...|..||+.|.+.+...++.. | ++|+++-=...|+.++.+.+..... .++|+..||+.. ....
T Consensus 134 ~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~----~kIRvsvIgLsa--Ev~i 207 (378)
T KOG2807|consen 134 KGLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKA----YKIRVSVIGLSA--EVFI 207 (378)
T ss_pred hcccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHHHHHHHHh----hCeEEEEEeech--hHHH
Confidence 5555 6688999999999999998765443 4 5566655555678888887776643 359999998865 4567
Q ss_pred HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccce
Q 007752 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~~p~ 507 (591)
.+.|+++|+|.|..+-|..-+ +.++.+...|.
T Consensus 208 cK~l~kaT~G~Y~V~lDe~Hl----keLl~e~~~Pp 239 (378)
T KOG2807|consen 208 CKELCKATGGRYSVALDEGHL----KELLLEHTHPP 239 (378)
T ss_pred HHHHHHhhCCeEEEEeCHHHH----HHHHHhcCCCC
Confidence 899999999999988876544 55666655543
No 66
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.18 E-value=4.9e-05 Score=75.81 Aligned_cols=163 Identities=20% Similarity=0.203 Sum_probs=99.9
Q ss_pred cCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCceeeecc----------------------
Q 007752 324 FRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSS---------------------- 378 (591)
Q Consensus 324 ~p~~vvfviD~SgS-M~g~~i~~ak~al~~~l~~L~--~~d~~~Iv~F~~~~~~~~~~---------------------- 378 (591)
.|-.++||||+|.. ....-++.+++++...|+.|+ ++.+|+|++|++.+..+.-.
T Consensus 2 ~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~ 81 (243)
T PF04811_consen 2 QPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLP 81 (243)
T ss_dssp S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTS
T ss_pred CCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCc
Confidence 45679999999954 445578999999999999999 89999999999987654210
Q ss_pred ---cc--cCCHHHHHHHHHHHhcCCC-----CCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh----------
Q 007752 379 ---MK--LASQGTIINATQWLSSLVA-----GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER---------- 438 (591)
Q Consensus 379 ---~~--~~~~~~~~~a~~~i~~l~a-----~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~---------- 438 (591)
.. ....+.+..+++.|..+.. .....++.||+.|..+++... ..-.|++++-|.++-+.
T Consensus 82 ~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~-~gGkI~~F~s~~pt~G~Gg~l~~~~~~ 160 (243)
T PF04811_consen 82 DGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRN-TGGKILVFTSGPPTYGPGGSLKKREDS 160 (243)
T ss_dssp SSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHT-S-EEEEEEESS---SSSTTSS-SBTTS
T ss_pred ccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccc-cCCEEEEEeccCCCCCCCceecccccc
Confidence 11 1224567777777764322 256789999999999998322 22367777777653110
Q ss_pred -----------------hHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHHHHHHHhCCCEEEEcCCCC
Q 007752 439 -----------------GICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFLQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 439 -----------------~~~~~v~~~~~~~~~~~~~I~tiGiG~-~~~~~lL~~LA~~~~G~~~~v~~~~ 490 (591)
+..+.+...+.. .++.|..|..+. .++-..|..|++.|||..++..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~fY~~la~~~~~---~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~ 227 (243)
T PF04811_consen 161 SHYDTEKEKALLLPPANEFYKKLAEECSK---QGISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFN 227 (243)
T ss_dssp CCCCHCTTHHCHSHSSSHHHHHHHHHHHH---CTEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTT
T ss_pred cccccccchhhhccccchHHHHHHHHHHh---cCCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCC
Confidence 022333333222 234444444443 4688889999999999999888776
No 67
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=98.15 E-value=3.8e-05 Score=78.96 Aligned_cols=157 Identities=14% Similarity=0.112 Sum_probs=98.6
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC-CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCC
Q 007752 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT 403 (591)
..=+++++|+||||...+-+.||.....+-.-|.. -.++-++.-.++...+ .++.+.. =.....|||
T Consensus 202 ~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~Ak-----EVdEeeF-------F~~~EsGGT 269 (371)
T TIGR02877 202 NAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAK-----EVTEEEF-------FHKGESGGT 269 (371)
T ss_pred cEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeE-----EcCHHHh-------cccCCCCCe
Confidence 34466889999999988888888876555444543 3567777666665442 2343221 134667999
Q ss_pred chHHHHHHHHHHhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCC-CCCHHHHHH--
Q 007752 404 NILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGL-YCNHYFLQI-- 474 (591)
Q Consensus 404 ~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~~~~~v~~~~~~~~~~~~~I~tiG-iG~-~~~~~lL~~-- 474 (591)
-+..|++.+.+.+... ...+-..+-+|||..+ |...+.+.+++.+.. ++.|+.| |+. .....+...
T Consensus 270 ~vSSA~~l~~eII~~rYpp~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp~-----~~~f~Y~Ei~~~~~~~~l~~~y~ 344 (371)
T TIGR02877 270 YCSSGYKKALEIIDERYNPARYNIYAFHFSDGDNLTSDNERAVKLVRKLLEV-----CNLFGYGEIMPYGYSNTLKNKFK 344 (371)
T ss_pred EehHHHHHHHHHHHhhCChhhCeeEEEEcccCCCccCCcHHHHHHHHHHHHh-----hheEEEEEecCCCCcchHHHHHH
Confidence 9999999999999753 2445578999999975 445566666664321 4566554 443 222334322
Q ss_pred --HHHhCCCEEEEcCCCCchHHHHHHH
Q 007752 475 --LAQIGRGYYDSAYDPGSVDYRIRRF 499 (591)
Q Consensus 475 --LA~~~~G~~~~v~~~~~l~~~l~~~ 499 (591)
|.. .+=....+.+.+++..+|.++
T Consensus 345 ~~i~~-~~f~~~~I~~~~dIyp~~r~l 370 (371)
T TIGR02877 345 NEIKD-PNFVPLIIRDKEDLYPALKKF 370 (371)
T ss_pred hhhcC-CCeEEEEeCCHHHHHHHHHHh
Confidence 432 333345567777777666655
No 68
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=98.11 E-value=1.8e-05 Score=81.69 Aligned_cols=166 Identities=18% Similarity=0.231 Sum_probs=102.7
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCce-------eeecccccCCHHHHHHHHHHHh--
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETH-------LFSSSMKLASQGTIINATQWLS-- 395 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~~~Iv~F~~~~~-------~~~~~~~~~~~~~~~~a~~~i~-- 395 (591)
.-|.+|||.||||.|.+|..|......+.+.|. .+..+-|..|-+.+. .|...-.+.++.-+......|.
T Consensus 414 tvVtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhiiyks 493 (620)
T COG4547 414 TVVTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHIIYKS 493 (620)
T ss_pred hhheeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHHHhc
Confidence 346799999999999999988887777777774 477888888877431 2322223334333333322221
Q ss_pred ----------cCCC--C-C--CCch-HHHHHHHHHHhhcCCCCccEEEEEecCCCCCh--------hhH---HHHHHHHH
Q 007752 396 ----------SLVA--G-G--GTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE--------RGI---CNEIKSYL 448 (591)
Q Consensus 396 ----------~l~a--~-G--gT~l-~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~--------~~~---~~~v~~~~ 448 (591)
++.. . | --|| +.||-+|-+.+-.++...++++++|||.+-+. .-. +..+.+.+
T Consensus 494 AdaPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpEqrkIlmmiSDGAPvddstlsvnpGnylerHLRaVieeI 573 (620)
T COG4547 494 ADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRKILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEI 573 (620)
T ss_pred cCCHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChhhceEEEEecCCCcccccccccCCchHHHHHHHHHHHHH
Confidence 1111 0 1 1233 57888998888877778889999999998432 112 22223333
Q ss_pred hcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007752 449 TNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 449 ~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~ 502 (591)
.. ...+.+.+||||.++-.++-+.. .+-|.++|...|...|..
T Consensus 574 Et--rSpveLlAIGighDvtRyYrrav---------tiVdaeeL~gamteqLa~ 616 (620)
T COG4547 574 ET--RSPVELLAIGIGHDVTRYYRRAV---------TIVDAEELAGAMTEQLAA 616 (620)
T ss_pred hc--CCchhheeeecccccchhhhhhe---------eEecHHHhchHHHHHHHH
Confidence 32 23578999999999877664432 234466666666555443
No 69
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=98.10 E-value=0.00013 Score=72.81 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=101.5
Q ss_pred cCceEEEEEeCCcCC-CcchHHHHHHHHHHHHHhCCCC---CeEEEEEeCCCceeeecc-----------------cccC
Q 007752 324 FRKDVVFLVDVSGSM-QGVLLEQTKNALSASLSKLNPQ---DSFNIIAFNGETHLFSSS-----------------MKLA 382 (591)
Q Consensus 324 ~p~~vvfviD~SgSM-~g~~i~~ak~al~~~l~~L~~~---d~~~Iv~F~~~~~~~~~~-----------------~~~~ 382 (591)
.|--++||||+|-.- +..-++.+++++...|+.++++ .+|+||+|++.++.+.-. ..+.
T Consensus 2 ~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~ 81 (244)
T cd01479 2 QPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPL 81 (244)
T ss_pred CCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCC
Confidence 466799999998543 2235899999999999999976 899999999987543100 0000
Q ss_pred ----------CHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-----------
Q 007752 383 ----------SQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER----------- 438 (591)
Q Consensus 383 ----------~~~~~~~a~~~i~~l---~a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~----------- 438 (591)
..+.+..+++.|..+ ....++.++.||+.|..+++... -.|++++.|.++-+.
T Consensus 82 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~G---GkIi~f~s~~pt~GpG~l~~~~~~~~ 158 (244)
T cd01479 82 PDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETG---GKIIVFQSSLPTLGAGKLKSREDPKL 158 (244)
T ss_pred CcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcC---CEEEEEeCCCCCcCCcccccCccccc
Confidence 113344444444322 12356789999999999998532 367888888764110
Q ss_pred --------------hHHHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHhCCCEEEEcC
Q 007752 439 --------------GICNEIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQIGRGYYDSAY 487 (591)
Q Consensus 439 --------------~~~~~v~~~~~~~~~~~~~I~tiGiG-~~~~~~lL~~LA~~~~G~~~~v~ 487 (591)
...+.+...+. ..++.|..|.+. ..++-..|..|++.|||..++..
T Consensus 159 ~~~~~e~~~~~p~~~fY~~la~~~~---~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~ 219 (244)
T cd01479 159 LSTDKEKQLLQPQTDFYKKLALECV---KSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYP 219 (244)
T ss_pred cCchhhhhhcCcchHHHHHHHHHHH---HcCeEEEEEEccCcccChhhhhhhhhhcCceEEEEC
Confidence 11112222221 233455555443 45788889999999999988877
No 70
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=98.09 E-value=5e-05 Score=80.12 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=101.5
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC-CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCc
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~ 404 (591)
-=+++++|+||||...+-+.||.....+..-|.. -.++-++.-.++...+ .++.+. .=....+|||-
T Consensus 247 AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~-----EVdEe~-------FF~~~esGGT~ 314 (421)
T PF04285_consen 247 AVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAK-----EVDEEE-------FFHSRESGGTR 314 (421)
T ss_pred EEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceE-----EecHHH-------hcccCCCCCeE
Confidence 4466889999999988888888876665555543 2345555555444332 123221 12446779999
Q ss_pred hHHHHHHHHHHhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCCCCC---HHHHHHH
Q 007752 405 ILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYCN---HYFLQIL 475 (591)
Q Consensus 405 l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~~~~~v~~~~~~~~~~~~~I~tiG-iG~~~~---~~lL~~L 475 (591)
+..|++.+.+++... ...+-.++-+|||..+ |...+.+.+.+.+-. .++.|+.+ |+.... ...++.+
T Consensus 315 vSSA~~l~~~ii~erypp~~wNiY~~~~SDGDN~~~D~~~~~~ll~~~llp----~~~~f~Y~Ei~~~~~~~~~~~~~~~ 390 (421)
T PF04285_consen 315 VSSAYELALEIIEERYPPSDWNIYVFHASDGDNWSSDNERCVELLEEELLP----VCNYFGYGEITQPGRHSSWREYEEL 390 (421)
T ss_pred ehHHHHHHHHHHHhhCChhhceeeeEEcccCccccCCCHHHHHHHHHHHHH----hcCeEEEEEeccCccchHHHHHHHH
Confidence 999999999999763 3455688999999975 444556666633322 14566553 331111 2235555
Q ss_pred HHhCCC-EEEEcCCCCchHHHHHHHHHH
Q 007752 476 AQIGRG-YYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 476 A~~~~G-~~~~v~~~~~l~~~l~~~l~~ 502 (591)
...... ....+.+.+++..+|..+|.+
T Consensus 391 ~~~~~~f~~~~i~~~~di~~~~r~~f~~ 418 (421)
T PF04285_consen 391 KESHDNFAMVRIREKEDIYPVFRELFKK 418 (421)
T ss_pred hhcCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 443333 345578889999999988865
No 71
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=97.85 E-value=0.00098 Score=67.21 Aligned_cols=164 Identities=17% Similarity=0.097 Sum_probs=102.2
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccc------------cCC--------
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMK------------LAS-------- 383 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~------------~~~-------- 383 (591)
.|.-++||||+|-. ...++.+|+++...|+.|+++.+|+||+|++.++.+.-... .++
T Consensus 2 ~pp~~vFviDvs~~--~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~~~~l 79 (267)
T cd01478 2 SPPVFLFVVDTCMD--EEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDML 79 (267)
T ss_pred CCCEEEEEEECccC--HHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHHHHHh
Confidence 35679999999764 56799999999999999999999999999999865431000 000
Q ss_pred ---------------------------------HHHHHHHHHHHhcCCC---------CCCCchHHHHHHHHHHhhcC-C
Q 007752 384 ---------------------------------QGTIINATQWLSSLVA---------GGGTNILLPLKQAIKLLSDT-S 420 (591)
Q Consensus 384 ---------------------------------~~~~~~a~~~i~~l~a---------~GgT~l~~aL~~a~~~l~~~-~ 420 (591)
.+........|+++.. .....++.||+.|..+++.. +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~~ 159 (267)
T cd01478 80 GLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFP 159 (267)
T ss_pred ccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhcC
Confidence 0111122223344432 14567899999999998742 1
Q ss_pred CCccEEEEEecCCCCChh----------------hH-----------HHHHHHHHh--cCCCCCCeEEEEEcCCCCCHHH
Q 007752 421 ESIPLIFLITDGTVGDER----------------GI-----------CNEIKSYLT--NTRSISPRICTFGVGLYCNHYF 471 (591)
Q Consensus 421 ~~~~~IillTDG~~~~~~----------------~~-----------~~~v~~~~~--~~~~~~~~I~tiGiG~~~~~~l 471 (591)
...-.|++++-|-++... ++ .+.-++... ......+.+|+.+. +.++-..
T Consensus 160 ~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~-d~vglae 238 (267)
T cd01478 160 NTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCL-DQVGLLE 238 (267)
T ss_pred CCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccc-cccCHHH
Confidence 122367777777654100 00 011111111 11234455555543 4578889
Q ss_pred HHHHHHhCCCEEEEcCCCC
Q 007752 472 LQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~ 490 (591)
|..|++.|||..++..+..
T Consensus 239 m~~l~~~TGG~v~~~~~f~ 257 (267)
T cd01478 239 MKVLVNSTGGHVVLSDSFT 257 (267)
T ss_pred HHHHHHhcCcEEEEeCCcc
Confidence 9999999999999877664
No 72
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=97.79 E-value=0.002 Score=61.54 Aligned_cols=170 Identities=18% Similarity=0.160 Sum_probs=107.3
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHH------hCC----CCCeEEEEEeCCC--ceeeecccccCCHHHHHHHHH
Q 007752 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLS------KLN----PQDSFNIIAFNGE--THLFSSSMKLASQGTIINATQ 392 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~~i~~ak~al~~~l~------~L~----~~d~~~Iv~F~~~--~~~~~~~~~~~~~~~~~~a~~ 392 (591)
..++++.+|+|+||....+..-++.+...|. .+. -...+.++.|++. .....+-+.-.+.++.+.+..
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~ 82 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA 82 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence 4679999999999998666555555544332 222 2346777888863 333333344567788888888
Q ss_pred HHhcCC--CCCCCchHHHHHHHHHHhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 393 WLSSLV--AGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 393 ~i~~l~--a~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
.|.... ..++|.|..||..+..++.+.+. ..+.|=+-.||..|......+..+..... .++.|..+.|+....
T Consensus 83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~---~GitINgL~I~~~~~ 159 (205)
T PF06707_consen 83 RLRAAPRRFGGRTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVA---AGITINGLAILDDDP 159 (205)
T ss_pred HHHhCCCCCCCCchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHH---CCeEEeeeEecCCCC
Confidence 787553 34779999999999999987643 34556677899987664444444544433 358899888875432
Q ss_pred -------HHHHHHHHHhCCCE-EEEcCCCCchHHHHHH
Q 007752 469 -------HYFLQILAQIGRGY-YDSAYDPGSVDYRIRR 498 (591)
Q Consensus 469 -------~~lL~~LA~~~~G~-~~~v~~~~~l~~~l~~ 498 (591)
.++-+.+- -|.|. ...+.+.++..++|.+
T Consensus 160 ~~~~~L~~yy~~~VI-gGpgAFV~~a~~~~df~~Airr 196 (205)
T PF06707_consen 160 FGGADLDAYYRRCVI-GGPGAFVETARGFEDFAEAIRR 196 (205)
T ss_pred CccccHHHHHhhhcc-cCCCceEEEcCCHHHHHHHHHH
Confidence 22222222 24453 4445666777666654
No 73
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=97.73 E-value=0.00011 Score=79.81 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=79.6
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCC-eEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCc
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQD-SFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d-~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~ 404 (591)
.+.+.|.|+||||.|.+++.+. +|..++..+..+. +=.+|+|+++.+... .+..++.+-++++..+..++.||
T Consensus 341 ~n~iav~DvSGSM~~~pm~vai-aLgll~ae~~~~pf~~~~ITFs~~P~~~~-----i~g~~l~ekv~~~~~~~wg~nTn 414 (534)
T PF11443_consen 341 ENCIAVCDVSGSMSGPPMDVAI-ALGLLIAELNKGPFKGRFITFSENPQLHK-----IKGDTLREKVRFIRRMDWGMNTN 414 (534)
T ss_pred cceEEEEecCCccCccHHHHHH-HHHHHHHHhcccccCCeEEeecCCceEEE-----ecCCCHHHHHHHHHhCCcccCCc
Confidence 6899999999999999888776 5666777775432 224899999987642 34447888888899999999999
Q ss_pred hHHHHHHHHHHhhcCC----CCccEEEEEecCCCC
Q 007752 405 ILLPLKQAIKLLSDTS----ESIPLIFLITDGTVG 435 (591)
Q Consensus 405 l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~ 435 (591)
+.+.++..+....+.. .-.+.++++||=+.+
T Consensus 415 ~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD 449 (534)
T PF11443_consen 415 FQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFD 449 (534)
T ss_pred HHHHHHHHHHHHHHcCCChHHCCceEEEEeccccc
Confidence 9999988888765431 335689999987653
No 74
>PLN00162 transport protein sec23; Provisional
Probab=97.63 E-value=0.0032 Score=72.78 Aligned_cols=176 Identities=18% Similarity=0.121 Sum_probs=109.7
Q ss_pred CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeec------------ccccCCH-----
Q 007752 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSS------------SMKLASQ----- 384 (591)
Q Consensus 322 ~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~------------~~~~~~~----- 384 (591)
.+.|.-++||||+| +....++.+|+++...|+.|+++.+|+||+|++.++.+.- .....+.
T Consensus 121 ~~~pp~fvFvID~s--~~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~ 198 (761)
T PLN00162 121 APSPPVFVFVVDTC--MIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILE 198 (761)
T ss_pred CCCCcEEEEEEecc--hhHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHH
Confidence 35677899999998 4556789999999999999999999999999999865321 0001111
Q ss_pred ---------------------------------------HHHHHHHHHHhcCC---CC---CCCchHHHHHHHHHHhhcC
Q 007752 385 ---------------------------------------GTIINATQWLSSLV---AG---GGTNILLPLKQAIKLLSDT 419 (591)
Q Consensus 385 ---------------------------------------~~~~~a~~~i~~l~---a~---GgT~l~~aL~~a~~~l~~~ 419 (591)
..+..+++.|.... +. .....+.||..|..++...
T Consensus 199 ~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~ 278 (761)
T PLN00162 199 QLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGAC 278 (761)
T ss_pred HhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhc
Confidence 23344444444332 11 3467899999999998742
Q ss_pred -CCCccEEEEEecCCCCChh----------------h--------------HHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 420 -SESIPLIFLITDGTVGDER----------------G--------------ICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 420 -~~~~~~IillTDG~~~~~~----------------~--------------~~~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
++..-.|++++-|-++.+. + ..+.+...+.. ....+.+|+.+. +.++
T Consensus 279 ~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~-~gisvDlF~~s~-dqvg 356 (761)
T PLN00162 279 VPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVA-QGHVLDVFACSL-DQVG 356 (761)
T ss_pred cCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHH-cCceEEEEEccc-cccC
Confidence 1223467777778754100 0 01111111111 234455555443 4578
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCc--hHHHHHHHHH
Q 007752 469 HYFLQILAQIGRGYYDSAYDPGS--VDYRIRRFFT 501 (591)
Q Consensus 469 ~~lL~~LA~~~~G~~~~v~~~~~--l~~~l~~~l~ 501 (591)
-..|+.+++.|||..+...+.+. +...+.+++.
T Consensus 357 laem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~ 391 (761)
T PLN00162 357 VAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFE 391 (761)
T ss_pred HHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhc
Confidence 88899999999999988766644 4444444444
No 75
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.53 E-value=0.00032 Score=71.44 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=66.7
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC-CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHh-cCCC-
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVA- 399 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~a- 399 (591)
..+..+++++|+||||++- . .....++..|.. -.++.+-.|++........+ ...+.+.|++.+. ....
T Consensus 216 ~~~~~lvvL~DVSGSm~~y--s---~~~L~l~hAl~q~~~R~~~F~F~TRLt~vT~~l---~~rD~~~Al~~~~a~v~dw 287 (395)
T COG3552 216 RRKPPLVVLCDVSGSMSGY--S---RIFLHLLHALRQQRSRVHVFLFGTRLTRVTHML---RERDLEDALRRLSAQVKDW 287 (395)
T ss_pred cCCCCeEEEEecccchhhh--H---HHHHHHHHHHHhcccceeEEEeechHHHHHHHh---ccCCHHHHHHHHHhhcccc
Confidence 3567899999999999862 1 122233333322 34666899999865543332 2344555655555 2333
Q ss_pred CCCCchHHHHHHHHHHhhcC-CCCccEEEEEecCCCCCh
Q 007752 400 GGGTNILLPLKQAIKLLSDT-SESIPLIFLITDGTVGDE 437 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~-~~~~~~IillTDG~~~~~ 437 (591)
+|||.|+.++..-++..... -.....|+++|||-..+.
T Consensus 288 ~ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd~ 326 (395)
T COG3552 288 DGGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRDD 326 (395)
T ss_pred cCCcchhHHHHHHHccccccccCCceEEEEEecccccCC
Confidence 49999999987665543322 123358999999998654
No 76
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=97.44 E-value=0.0084 Score=63.20 Aligned_cols=187 Identities=16% Similarity=0.117 Sum_probs=106.3
Q ss_pred eEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCcee-ee-------
Q 007752 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHL-FS------- 376 (591)
Q Consensus 308 ~f~~~~~P~~~~~~~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~~-~~------- 376 (591)
.|.+.+.+. +..|.|+.|++|.|+||.. .++.+|.....+.+.| ..+-|+++=+|-+.... +.
T Consensus 87 ~f~~~~~~a-----~~yPvDLYyLMDlS~SM~d-dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l 160 (423)
T smart00187 87 NFTLTVRQA-----EDYPVDLYYLMDLSYSMKD-DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKL 160 (423)
T ss_pred EEEEEEEec-----ccCccceEEEEeCCccHHH-HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHh
Confidence 455555443 3468999999999999975 6777777766665554 56788998888776320 00
Q ss_pred --cc---------------cccCCHHHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HHhhcCCCCccEEEEEecC
Q 007752 377 --SS---------------MKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITDG 432 (591)
Q Consensus 377 --~~---------------~~~~~~~~~~~a~~~i~~l~a~GgT~l----~~aL~~a~---~~l~~~~~~~~~IillTDG 432 (591)
|+ ..+.+ ++..+..+.++....+|+-+- .+||-.|. +.+.=+++..+.+|+.||+
T Consensus 161 ~~PC~~~~~~c~p~f~f~~~L~LT-~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa 239 (423)
T smart00187 161 ENPCPNYNLTCEPPYGFKHVLSLT-DDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDA 239 (423)
T ss_pred cCCCcCCCCCcCCCcceeeeccCC-CCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCC
Confidence 00 01112 355566666776665554442 34444333 2221123566789999998
Q ss_pred CCC--------------Ch-----------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCC
Q 007752 433 TVG--------------DE-----------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRG 481 (591)
Q Consensus 433 ~~~--------------~~-----------------~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G 481 (591)
... |+ -..+..+.+.+... .-..||++- .. ...+-+.|+..=.|
T Consensus 240 ~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~--nI~~IFAVT--~~-~~~~Y~~Ls~lipg 314 (423)
T smart00187 240 GFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAEN--NINPIFAVT--KK-QVSLYKELSALIPG 314 (423)
T ss_pred CccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhc--CceEEEEEc--cc-chhHHHHHHHhcCc
Confidence 742 10 01234444444332 124577762 21 23355677766555
Q ss_pred EEEE--cCCCCchHHHHHHHHHHhccc
Q 007752 482 YYDS--AYDPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 482 ~~~~--v~~~~~l~~~l~~~l~~~~~p 506 (591)
...- ..|...+-+.+.+.++++.+.
T Consensus 315 s~vg~Ls~DSsNIv~LI~~aY~~i~S~ 341 (423)
T smart00187 315 SSVGVLSEDSSNVVELIKDAYNKISSR 341 (423)
T ss_pred ceeeecccCcchHHHHHHHHHHhhceE
Confidence 5443 355577777777777776653
No 77
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.38 E-value=0.0035 Score=67.49 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=104.1
Q ss_pred cCceEEEEEeCCcCCC---------------cchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCce------eeec-cccc
Q 007752 324 FRKDVVFLVDVSGSMQ---------------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETH------LFSS-SMKL 381 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~---------------g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~------~~~~-~~~~ 381 (591)
...++++-||-+.|-. -...++|..++-..+....++.+|--..||...- ..+. ...+
T Consensus 284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~ 363 (529)
T KOG1327|consen 284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP 363 (529)
T ss_pred ceeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCC
Confidence 4578888888888733 2467888888888888888888999999998821 1110 0000
Q ss_pred CC-----HHHH-HHHHHHHhcCCCCCCCchHHHHHHHHHHhhcCC---CCccEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 007752 382 AS-----QGTI-INATQWLSSLVAGGGTNILLPLKQAIKLLSDTS---ESIPLIFLITDGTVGDERGICNEIKSYLTNTR 452 (591)
Q Consensus 382 ~~-----~~~~-~~a~~~i~~l~a~GgT~l~~aL~~a~~~l~~~~---~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~ 452 (591)
.+ -+.+ ..-.+.+.+++..|.|++..-|..+.+...+.. ...-+++++|||.+++..+..+.+-++ .
T Consensus 364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTdm~~T~~AIV~A----S 439 (529)
T KOG1327|consen 364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTDMKETRDAIVSA----S 439 (529)
T ss_pred CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCccccHHHHHHHHHhh----c
Confidence 11 1222 222334457788899999999999999887643 333478999999999987776665544 3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHh
Q 007752 453 SISPRICTFGVGLYCNHYFLQILAQI 478 (591)
Q Consensus 453 ~~~~~I~tiGiG~~~~~~lL~~LA~~ 478 (591)
.....|..+|+|+ .+...|+.|-..
T Consensus 440 ~lPlSIIiVGVGd-~df~~M~~lD~d 464 (529)
T KOG1327|consen 440 DLPLSIIIVGVGD-ADFDMMRELDGD 464 (529)
T ss_pred cCCeEEEEEEeCC-CCHHHHHHhhcC
Confidence 4567899999995 488888887543
No 78
>PTZ00395 Sec24-related protein; Provisional
Probab=97.36 E-value=0.018 Score=67.70 Aligned_cols=226 Identities=17% Similarity=0.115 Sum_probs=130.7
Q ss_pred CCccCceEEEEEeCCc-CCCcchHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCceeee--cc------------------
Q 007752 321 RKVFRKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFS--SS------------------ 378 (591)
Q Consensus 321 ~~~~p~~vvfviD~Sg-SM~g~~i~~ak~al~~~l~~L~-~~d~~~Iv~F~~~~~~~~--~~------------------ 378 (591)
..+.|..++||||+|- |+...-+..+-++++..|+.++ +..+|+||+|++...-|. +.
T Consensus 948 ~~p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQ 1027 (1560)
T PTZ00395 948 KNMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQ 1027 (1560)
T ss_pred cCCCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCce
Confidence 3467889999999995 3444466778888888888886 468999999999864321 10
Q ss_pred ----------cccC-----------CHHHHHHHHHHHhcCC---CCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCC
Q 007752 379 ----------MKLA-----------SQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTV 434 (591)
Q Consensus 379 ----------~~~~-----------~~~~~~~a~~~i~~l~---a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~ 434 (591)
.++. ..+.++.+++.|..+. ...+..+..||+.|+.++....+.-+.+++.+ ..|
T Consensus 1028 MLVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~S-SLP 1106 (1560)
T PTZ00395 1028 VIVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYT-TTP 1106 (1560)
T ss_pred EEeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEc-CCC
Confidence 0011 1234445555554432 23567899999999999986543334555544 444
Q ss_pred CCh--------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCC--CHHHHHHHHHhCCCEEEEcCCCCc-
Q 007752 435 GDE--------------------RGICNEIKSYLTNTRSISPRICTFGVGLYC--NHYFLQILAQIGRGYYDSAYDPGS- 491 (591)
Q Consensus 435 ~~~--------------------~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~--~~~lL~~LA~~~~G~~~~v~~~~~- 491 (591)
+-. ....+.+...+.+ ....+.+|.++- ..+ +-.-|..|++.|||..++......
T Consensus 1107 niGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk-~qISVDLFLfSs-qYvDVDVATLg~Lsr~TGGqlyyYPnFna~ 1184 (1560)
T PTZ00395 1107 NCGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYA-FNISVDIFIISS-NNVRVCVPSLQYVAQNTGGKILFVENFLWQ 1184 (1560)
T ss_pred CCCCCcccccccccccccccccchHHHHHHHHHHHh-cCCceEEEEccC-cccccccccccchhcccceeEEEeCCCccc
Confidence 210 1111222222211 234455555432 223 345688999999999887665422
Q ss_pred --hHHHHHHHHHHhcc-ceE--eeEEEEecCCCcceeeeC-------------CCCCCcCCCCeEEEEEEEeCCCC
Q 007752 492 --VDYRIRRFFTAASS-VFL--TNMTLETSKHLNSLELFP-------------SHIPDFCLECPLIVSGRYSGNFG 549 (591)
Q Consensus 492 --l~~~l~~~l~~~~~-p~~--~~i~l~~~~~~~~~~v~p-------------~~ip~l~~g~~l~v~g~~~g~~~ 549 (591)
-.....++...+.. +.. .-++|+...++.....+. -.+|.+-.++.+.|.-++.+...
T Consensus 1185 rD~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~ 1260 (1560)
T PTZ00395 1185 KDYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISE 1260 (1560)
T ss_pred ccHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccC
Confidence 22223344444443 332 334555545544333331 23677778888888888876543
No 79
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=97.32 E-value=0.0011 Score=65.21 Aligned_cols=106 Identities=22% Similarity=0.318 Sum_probs=63.0
Q ss_pred EEEEEeCCcCCCc------chHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCcee-------------eecccccCCHH
Q 007752 328 VVFLVDVSGSMQG------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHL-------------FSSSMKLASQG 385 (591)
Q Consensus 328 vvfviD~SgSM~g------~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~~-------------~~~~~~~~~~~ 385 (591)
++|+||+|.||.. ..++.+.+++..++... .+.|.++|+.||++... +.+ +...+.+
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~-l~~~~~~ 80 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQP-LDPPSAE 80 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEE-CC--BHH
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeec-CCccCHH
Confidence 7999999999973 25888888888777653 45799999999977432 111 2223444
Q ss_pred HHHHHHHHHhc-------CCCCCCCchHHHHHHHHHHhhc--C--CCCccEEEEEecCCC
Q 007752 386 TIINATQWLSS-------LVAGGGTNILLPLKQAIKLLSD--T--SESIPLIFLITDGTV 434 (591)
Q Consensus 386 ~~~~a~~~i~~-------l~a~GgT~l~~aL~~a~~~l~~--~--~~~~~~IillTDG~~ 434 (591)
.+....+.+.. .......++..||..|..++.. . ....+.|+|+||+..
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~ 140 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDG 140 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SS
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCC
Confidence 44444333222 1123455899999999998875 2 234578999999975
No 80
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.008 Score=67.03 Aligned_cols=179 Identities=20% Similarity=0.185 Sum_probs=111.6
Q ss_pred eEEEEEecCCCCCCCccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCceeeec-------
Q 007752 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSS------- 377 (591)
Q Consensus 308 ~f~~~~~P~~~~~~~~~p~~vvfviD~SgS-M~g~~i~~ak~al~~~l~~L~--~~d~~~Iv~F~~~~~~~~~------- 377 (591)
.+.=++.|.+-.-+++.|.-++||+|+|-| |+..-++.+++++..-|+.|+ +..+|++|+|++..+.+.-
T Consensus 277 s~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp 356 (887)
T KOG1985|consen 277 SVVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQP 356 (887)
T ss_pred eeEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCC
Confidence 344467788776777889999999999965 444578999999999999998 6789999999999754320
Q ss_pred ------------------cccc--CCHHHHHHHHHHHhcCCC---CCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCC
Q 007752 378 ------------------SMKL--ASQGTIINATQWLSSLVA---GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTV 434 (591)
Q Consensus 378 ------------------~~~~--~~~~~~~~a~~~i~~l~a---~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~ 434 (591)
.+++ ...+.++.+++.+..+-. .-+..++.||+.|..++....| .|+++.-+.+
T Consensus 357 ~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG---ri~vf~s~lP 433 (887)
T KOG1985|consen 357 QMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG---RISVFQSTLP 433 (887)
T ss_pred ceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC---eEEEEeccCC
Confidence 0000 112345555555553332 2567899999999999976433 3444544554
Q ss_pred CCh------h---------hHH-------HHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHhCCCEEEEcCCC
Q 007752 435 GDE------R---------GIC-------NEIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQIGRGYYDSAYDP 489 (591)
Q Consensus 435 ~~~------~---------~~~-------~~v~~~~~~~~~~~~~I~tiGiG-~~~~~~lL~~LA~~~~G~~~~v~~~ 489 (591)
+-+ + +.. ..-|+......+.++.|--|-+. .+.|-.-|..|++.+||..++-...
T Consensus 434 nlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f 511 (887)
T KOG1985|consen 434 NLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSF 511 (887)
T ss_pred CCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccCC
Confidence 310 0 000 11122111111223333334333 4457778999999999987765443
No 81
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.17 E-value=0.015 Score=58.69 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=99.6
Q ss_pred ceEEEEEeCCcCCCc--------chHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCc-eeeecccc-------------
Q 007752 326 KDVVFLVDVSGSMQG--------VLLEQTKNALSASLSK---LNPQDSFNIIAFNGET-HLFSSSMK------------- 380 (591)
Q Consensus 326 ~~vvfviD~SgSM~g--------~~i~~ak~al~~~l~~---L~~~d~~~Iv~F~~~~-~~~~~~~~------------- 380 (591)
.-+++|||++.--+| ..+..+-+++..|++. +....++.|++..+.. +.+.+...
T Consensus 3 slL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~ 82 (279)
T TIGR00627 3 SLLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKR 82 (279)
T ss_pred cEEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCcccccccccccccc
Confidence 347889999866542 2455666666666653 4667899999886553 33222210
Q ss_pred ----------cCCHHHHHHHHHHHhcC----CCCCCCchHHHHHHHHHHhhcC-------CCCccEEEEEecCCCCChhh
Q 007752 381 ----------LASQGTIINATQWLSSL----VAGGGTNILLPLKQAIKLLSDT-------SESIPLIFLITDGTVGDERG 439 (591)
Q Consensus 381 ----------~~~~~~~~~a~~~i~~l----~a~GgT~l~~aL~~a~~~l~~~-------~~~~~~IillTDG~~~~~~~ 439 (591)
..+..-+++..+.++.. ...+.|.|..||..|+-.+.+. .+-..+|++++-+. +...+
T Consensus 83 ~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-~~~~q 161 (279)
T TIGR00627 83 LRELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-DMALQ 161 (279)
T ss_pred ccchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-CchHH
Confidence 00000122222333321 1225678999999999887542 12234677776543 33333
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHH
Q 007752 440 ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYR 495 (591)
Q Consensus 440 ~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~ 495 (591)
.... .+.+....+.+++|.+++++.+.+..+|++++..|||.|..+.+.+.+.+.
T Consensus 162 Yi~~-mn~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q~ 216 (279)
T TIGR00627 162 YIPL-MNCIFSAQKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQY 216 (279)
T ss_pred HHHH-HHHHHHHHHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHHH
Confidence 2222 233333334569999999987656889999999999999998877655433
No 82
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=97.10 E-value=0.0076 Score=54.89 Aligned_cols=120 Identities=17% Similarity=0.226 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHHHHhCCCCCeEEEEEeCCCce---e---eeccc------ccCC-HHHHHHHHHHHhcCCCCCCCchHH
Q 007752 341 VLLEQTKNALSASLSKLNPQDSFNIIAFNGETH---L---FSSSM------KLAS-QGTIINATQWLSSLVAGGGTNILL 407 (591)
Q Consensus 341 ~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~---~---~~~~~------~~~~-~~~~~~a~~~i~~l~a~GgT~l~~ 407 (591)
...++|-.++-.+|.....+..|-+..||.... . .++.. .-.. ..-++.-.+.+.+++..|-|++..
T Consensus 11 N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fap 90 (146)
T PF07002_consen 11 NPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFAP 90 (146)
T ss_pred CHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHHH
Confidence 577888888889999888888999999998742 1 01111 0011 222333345566788899999999
Q ss_pred HHHHHHHHhhc---CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcC
Q 007752 408 PLKQAIKLLSD---TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVG 464 (591)
Q Consensus 408 aL~~a~~~l~~---~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG 464 (591)
-++.|.+.... .....-.++++|||..+|..+..+.+.++ ....+.|..+|+|
T Consensus 91 iI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~A----S~~PlSIIiVGVG 146 (146)
T PF07002_consen 91 IINHAAKIAKQSNQNGQQYFILLILTDGQITDMEETIDAIVEA----SKLPLSIIIVGVG 146 (146)
T ss_pred HHHHHHHHHhhhccCCceEEEEEEecccccccHHHHHHHHHHH----ccCCeEEEEEEeC
Confidence 99999998763 22334478999999999988777766655 2345788889987
No 83
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.038 Score=52.35 Aligned_cols=132 Identities=17% Similarity=0.232 Sum_probs=90.7
Q ss_pred ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHH-hC--CCCCeEEEEEeCC-CceeeecccccCCHHHHHHHHHHHhc
Q 007752 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLS-KL--NPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 326 ~~vvfviD~SgSM~g-----~~i~~ak~al~~~l~-~L--~~~d~~~Iv~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
-..++|||.|-=|+. ++++.-++++..+.. .+ +|...++|++..+ +++.+...+ ...-+.+..+..
T Consensus 4 Eatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T-----~d~gkils~lh~ 78 (259)
T KOG2884|consen 4 EATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLT-----SDRGKILSKLHG 78 (259)
T ss_pred ceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeecc-----ccchHHHHHhcC
Confidence 357899999988874 588889999988764 33 3578999999988 677765432 234456677889
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCCc---cEEEEEecCCC--CChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 397 LVAGGGTNILLPLKQAIKLLSDTSESI---PLIFLITDGTV--GDERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 397 l~a~GgT~l~~aL~~a~~~l~~~~~~~---~~IillTDG~~--~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
++..|+-++..+|+.|.-.++.+.+.. +.|+|+ |.+ ..+.+.....++..+ .++.|-.|-+|...+
T Consensus 79 i~~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFv--GSpi~e~ekeLv~~akrlkk----~~Vaidii~FGE~~~ 149 (259)
T KOG2884|consen 79 IQPHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFV--GSPIEESEKELVKLAKRLKK----NKVAIDIINFGEAEN 149 (259)
T ss_pred CCcCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEe--cCcchhhHHHHHHHHHHHHh----cCeeEEEEEeccccc
Confidence 999999999999999988887653322 334444 444 334445555454433 347777788886543
No 84
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=97.01 E-value=0.0084 Score=59.29 Aligned_cols=169 Identities=16% Similarity=0.201 Sum_probs=104.6
Q ss_pred cCceEEEEEeCCcCCCcchH---------HHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHH
Q 007752 324 FRKDVVFLVDVSGSMQGVLL---------EQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWL 394 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i---------~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i 394 (591)
.=+.+++++|+|.+|....+ ..|...+..|.++ +|-..++|+...+....+... ... |.+.-+..+
T Consensus 86 IiRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~q-NPiSqlsii~irdg~a~~~s~-~~g---npq~hi~~l 160 (421)
T COG5151 86 IIRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQ-NPISQLSIISIRDGCAKYTSS-MDG---NPQAHIGQL 160 (421)
T ss_pred hhheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhcc-CCchheeeeehhhhHHHHhhh-cCC---CHHHHHHHh
Confidence 44789999999999986432 2222233333333 345678888877664332222 223 334444445
Q ss_pred hcCC-CCCCCchHHHHHHHHHHhhcC-CCCcc-EEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007752 395 SSLV-AGGGTNILLPLKQAIKLLSDT-SESIP-LIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (591)
Q Consensus 395 ~~l~-a~GgT~l~~aL~~a~~~l~~~-~~~~~-~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~l 471 (591)
.++. ..|.-.|..||+.|.-.+... ....+ .+|++-.=...|+.++.+.+...+.. ++|+..+|+.. .-.+
T Consensus 161 kS~rd~~gnfSLqNaLEmar~~l~~~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~~----~IrV~~igL~a--evai 234 (421)
T COG5151 161 KSKRDCSGNFSLQNALEMARIELMKNTMHGTREVLIIFGSTSTRDPGDIAETIDKLVAY----NIRVHFIGLCA--EVAI 234 (421)
T ss_pred hcccccCCChhHHhHHHHhhhhhcccccccceEEEEEEeecccCCCccHHHHHHHHHhh----ceEEEEEeehh--HHHH
Confidence 5444 458889999999995444433 22234 44444333445777777777666543 48999998865 4567
Q ss_pred HHHHHHhC----CCEEEEcCCCCchHHHHHHHHHHhccce
Q 007752 472 LQILAQIG----RGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 472 L~~LA~~~----~G~~~~v~~~~~l~~~l~~~l~~~~~p~ 507 (591)
.++|..++ .|.|+.+-|.. -+.+++.++..|.
T Consensus 235 cKeickaTn~~~e~~y~v~vde~----Hl~el~~E~~~P~ 270 (421)
T COG5151 235 CKEICKATNSSTEGRYYVPVDEG----HLSELMRELSHPT 270 (421)
T ss_pred HHHHHhhcCcCcCceeEeeecHH----HHHHHHHhcCCCC
Confidence 88998887 78888777654 4456666666664
No 85
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.011 Score=60.54 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=93.3
Q ss_pred EEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC-CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCCCchH
Q 007752 328 VVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNIL 406 (591)
Q Consensus 328 vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l~ 406 (591)
++-++|+||||....-+.||.....+-.-|.- -+++-|+...+....+. ++... +. ..+.+|||-+.
T Consensus 249 mfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~E-----VdE~d------FF-~~~esGGTivS 316 (423)
T COG2718 249 MFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAKE-----VDETD------FF-YSQESGGTIVS 316 (423)
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCccee-----cchhh------ce-eecCCCCeEeH
Confidence 44578999999988888888765444333432 35666666665544321 22211 11 23567999999
Q ss_pred HHHHHHHHHhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCCCCCHHHH--HHHHHh
Q 007752 407 LPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYCNHYFL--QILAQI 478 (591)
Q Consensus 407 ~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~~~~~v~~~~~~~~~~~~~I~tiG-iG~~~~~~lL--~~LA~~ 478 (591)
.||+.+.+++... ..+....+-.|||... |...+...+.+.+-.. ++.|+.+ |-..-.+..| +.+-..
T Consensus 317 SAl~~m~evi~ErYp~aeWNIY~fqaSDGDN~~dDserc~~ll~~~im~~----~~~y~Y~Eitq~~~H~t~~y~~~~~~ 392 (423)
T COG2718 317 SALKLMLEVIKERYPPAEWNIYAFQASDGDNWADDSERCVELLAKKLMPV----VQYYGYIEITQRRTHQTLEYEALQGV 392 (423)
T ss_pred HHHHHHHHHHHhhCChhheeeeeeeecCCccccCCCHHHHHHHHHHHHHh----hhheEEEeeeecccchhhhhhhhhcc
Confidence 9999999999763 2445678999999974 4445555555333221 3444432 1111112222 111111
Q ss_pred C-CCEEEEcCCCCchHHHHHHHHHH
Q 007752 479 G-RGYYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 479 ~-~G~~~~v~~~~~l~~~l~~~l~~ 502 (591)
. +=.+..+.+++++-.+|.++|.+
T Consensus 393 ~dnFa~~~I~~~~Diypvfr~lf~k 417 (423)
T COG2718 393 FDNFAMQTIREPDDIYPVFRELFSK 417 (423)
T ss_pred CcchheeeecCHHHHHHHHHHHHhc
Confidence 1 12345677888898888888865
No 86
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.14 Score=57.89 Aligned_cols=223 Identities=14% Similarity=0.159 Sum_probs=129.4
Q ss_pred CccCceEEEEEeCCcC--CCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeec-------------------
Q 007752 322 KVFRKDVVFLVDVSGS--MQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSS------------------- 377 (591)
Q Consensus 322 ~~~p~~vvfviD~SgS--M~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~------------------- 377 (591)
.+.|-.+||+||+|-. |.| -...+-++++.+|..|+ ++.+++|++|++.++.+..
T Consensus 414 ~p~ppafvFmIDVSy~Ai~~G-~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvf 492 (1007)
T KOG1984|consen 414 PPKPPAFVFMIDVSYNAISNG-AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVF 492 (1007)
T ss_pred CCCCceEEEEEEeehhhhhcc-hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeecccccc
Confidence 3567899999999844 444 44566778888888776 4789999999999764321
Q ss_pred ------cccc--CCHHHHHHHHHHHhcCCCC-C--CCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC-----------
Q 007752 378 ------SMKL--ASQGTIINATQWLSSLVAG-G--GTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG----------- 435 (591)
Q Consensus 378 ------~~~~--~~~~~~~~a~~~i~~l~a~-G--gT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~----------- 435 (591)
..+. .+..-++.+++.|..+-.+ + -|-+..+|+.|+..++... .-+.+ +++--.++
T Consensus 493 vPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~-gGKl~-vF~s~Lpt~g~g~kl~~r~ 570 (1007)
T KOG1984|consen 493 VPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD-GGKLF-VFHSVLPTAGAGGKLSNRD 570 (1007)
T ss_pred cccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC-CceEE-EEecccccccCcccccccc
Confidence 0111 1123455566666655554 3 3457899999998887643 22333 33322221
Q ss_pred -------C--------hhhHH-HHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchH---HHH
Q 007752 436 -------D--------ERGIC-NEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVD---YRI 496 (591)
Q Consensus 436 -------~--------~~~~~-~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~---~~l 496 (591)
+ .+... .+.++.++. ...+.+|.+-- ..+|...|-.+...|||..+.-.....+. ..+
T Consensus 571 D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~--g~svDlF~t~~-ayvDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~ 647 (1007)
T KOG1984|consen 571 DRRLIGTDKEKNLLQPQDKTYTTLAKEFVES--GCSVDLFLTPN-AYVDVATLGVVPALTGGQVYKYYPFQALTDGPRLL 647 (1007)
T ss_pred hhhhhcccchhhccCcchhHHHHHHHHHHHh--CceEEEEEccc-ceeeeeeecccccccCceeEEecchhhcccHHHHH
Confidence 0 01112 222333332 24456665522 23455567777888999987766543332 444
Q ss_pred HHHHHHhccceEeeEEEEec--CCCcceeee-------C--CCCCCcCCCCeEEEEEEEeCCCCc
Q 007752 497 RRFFTAASSVFLTNMTLETS--KHLNSLELF-------P--SHIPDFCLECPLIVSGRYSGNFGD 550 (591)
Q Consensus 497 ~~~l~~~~~p~~~~i~l~~~--~~~~~~~v~-------p--~~ip~l~~g~~l~v~g~~~g~~~~ 550 (591)
.++...+..+.--++-++.. .++...+.+ + ..++.|-.++.+.|--+++++.++
T Consensus 648 nDL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~ 712 (1007)
T KOG1984|consen 648 NDLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQD 712 (1007)
T ss_pred HHHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccccC
Confidence 55666666665555544432 333222222 2 246777788888888888876543
No 87
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=96.65 E-value=0.15 Score=51.62 Aligned_cols=169 Identities=17% Similarity=0.175 Sum_probs=100.6
Q ss_pred ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCc-eeeecccc----------cCC---
Q 007752 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSK---LNPQDSFNIIAFNGET-HLFSSSMK----------LAS--- 383 (591)
Q Consensus 326 ~~vvfviD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~~~Iv~F~~~~-~~~~~~~~----------~~~--- 383 (591)
.=+++|||++..-++ ..+..+-+++..|++. +....++.||+.+... +.+.|... ..+
T Consensus 2 SLLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~ 81 (276)
T PF03850_consen 2 SLLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSD 81 (276)
T ss_pred cEEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCcccccccc
Confidence 347899999866554 2566666777667663 4667899999887664 33333222 000
Q ss_pred ----------HHHH-HHHHHHHhcCCCC----CCCchHHHHHHHHHHhhcC----C----CCccEEEEEecCCCCChhhH
Q 007752 384 ----------QGTI-INATQWLSSLVAG----GGTNILLPLKQAIKLLSDT----S----ESIPLIFLITDGTVGDERGI 440 (591)
Q Consensus 384 ----------~~~~-~~a~~~i~~l~a~----GgT~l~~aL~~a~~~l~~~----~----~~~~~IillTDG~~~~~~~~ 440 (591)
.+.+ +++.+.+++.... ..+.|..||..|+-.+.+. . .-..+|+++.-|.++...+.
T Consensus 82 ~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QY 161 (276)
T PF03850_consen 82 SNKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQY 161 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHH
Confidence 0111 2222222222221 1278899999888777653 1 12234555244444444444
Q ss_pred HHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHH
Q 007752 441 CNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRI 496 (591)
Q Consensus 441 ~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l 496 (591)
...+. .+-.+.+.++.|-++-+|. .+..+|++.+..|+|.|..+.+.+.+-+-+
T Consensus 162 i~~MN-~iFaAqk~~v~IDv~~L~~-~~s~fLqQa~d~T~G~y~~~~~~~~l~q~L 215 (276)
T PF03850_consen 162 IPLMN-CIFAAQKQKVPIDVCKLGG-KDSTFLQQASDITGGIYLKVSKPEGLLQYL 215 (276)
T ss_pred HHHHH-HHHHHhcCCceeEEEEecC-CchHHHHHHHHHhCceeeccCccccHHHHH
Confidence 44333 2333345668899998888 478899999999999999998876654433
No 88
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=96.49 E-value=0.051 Score=61.09 Aligned_cols=138 Identities=15% Similarity=0.230 Sum_probs=83.4
Q ss_pred ceEEEEEeCCcCCCc--------chHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCce----------eeecccccCCH
Q 007752 326 KDVVFLVDVSGSMQG--------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH----------LFSSSMKLASQ 384 (591)
Q Consensus 326 ~~vvfviD~SgSM~g--------~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~----------~~~~~~~~~~~ 384 (591)
--|+|+||+|.||.. .++..+..++..++.+. .++|.++|+.||++-. .+.+ +...+.
T Consensus 11 eailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~-L~~p~a 89 (584)
T TIGR00578 11 DSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQE-LDNPGA 89 (584)
T ss_pred eEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEee-CCCCCH
Confidence 458999999999984 46778888888887764 5789999999998632 1222 223344
Q ss_pred HHHHHHHHHHhc-----C--CCC-CC-CchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCC--hhhHHHHHHHHHhcC
Q 007752 385 GTIINATQWLSS-----L--VAG-GG-TNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGD--ERGICNEIKSYLTNT 451 (591)
Q Consensus 385 ~~~~~a~~~i~~-----l--~a~-Gg-T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~--~~~~~~~v~~~~~~~ 451 (591)
+.+.+..+.+.. + ..+ +. ..+.++|..+.+++.+. .-..+.|+++||-..-. ...........+...
T Consensus 90 ~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~~~~~~~a~~~a~dl 169 (584)
T TIGR00578 90 KRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDL 169 (584)
T ss_pred HHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCchhHHHHHHHHHHHH
Confidence 444443332221 0 011 11 36899999999999753 22457899999986421 111111212222233
Q ss_pred CCCCCeEEEEEcC
Q 007752 452 RSISPRICTFGVG 464 (591)
Q Consensus 452 ~~~~~~I~tiGiG 464 (591)
...++.|-.|.+.
T Consensus 170 ~~~gi~ielf~l~ 182 (584)
T TIGR00578 170 RDTGIFLDLMHLK 182 (584)
T ss_pred HhcCeEEEEEecC
Confidence 3456777777654
No 89
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.18 Score=46.71 Aligned_cols=141 Identities=19% Similarity=0.208 Sum_probs=96.6
Q ss_pred ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhC---CCCCeEEEEEeCCC-ceeeecccccCCHHHHHHHHHHHhc
Q 007752 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 326 ~~vvfviD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
-..+++||.|--|.. ++++.-|+++..+++.- .+...++++.-... ...+.. -....-..+.++..
T Consensus 4 EatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT-----~T~~~gkilt~lhd 78 (243)
T COG5148 4 EATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLST-----PTKQRGKILTFLHD 78 (243)
T ss_pred ceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhcc-----chhhhhHHHHHhcc
Confidence 457899999876653 58899999999887643 35678999988765 333322 23455667778899
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCC---ccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007752 397 LVAGGGTNILLPLKQAIKLLSDTSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 397 l~a~GgT~l~~aL~~a~~~l~~~~~~---~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~ 473 (591)
++-.|+.++..+|..|.-.++.+.+. .+.+.|+..-...++.+.+..+++..+ .++-|-.|-+|...|...|.
T Consensus 79 ~~~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkk----nnVAidii~fGE~~n~~~l~ 154 (243)
T COG5148 79 IRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKK----NNVAIDIIFFGEAANMAGLF 154 (243)
T ss_pred ccccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHh----cCeeEEEEehhhhhhhhHHH
Confidence 99999999999999998888765322 234444433333455667776666644 35778888888877766554
Q ss_pred HH
Q 007752 474 IL 475 (591)
Q Consensus 474 ~L 475 (591)
..
T Consensus 155 ef 156 (243)
T COG5148 155 EF 156 (243)
T ss_pred HH
Confidence 43
No 90
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.022 Score=56.82 Aligned_cols=93 Identities=20% Similarity=0.286 Sum_probs=59.9
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHh-cCCCCCCCch
Q 007752 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNI 405 (591)
Q Consensus 327 ~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~a~GgT~l 405 (591)
.+++++|+||||....++++..-+..+++ .++.+..|+.-+..++..-. +.. -+++. .+..+|||++
T Consensus 263 ~i~vaVDtSGS~~d~ei~a~~~Ei~~Il~--~~~~eltli~~D~~v~~~~~----~r~------g~~~~~~~~ggG~Tdf 330 (396)
T COG3864 263 KIVVAVDTSGSMTDAEIDAAMTEIFDILK--NKNYELTLIECDNIVRRMYR----VRK------GRDMKKKLDGGGGTDF 330 (396)
T ss_pred heEEEEecCCCccHHHHHHHHHHHHHHHh--CCCcEEEEEEecchhhhhhc----cCC------cccCCcccCCCCCccc
Confidence 48899999999998777666666666652 35678888888877653211 110 12233 3445578999
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCCC
Q 007752 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGD 436 (591)
Q Consensus 406 ~~aL~~a~~~l~~~~~~~~~IillTDG~~~~ 436 (591)
..+++. +.+. .....+|++|||.-+.
T Consensus 331 ~Pvfey----lek~-~~~~~lIyfTDG~gd~ 356 (396)
T COG3864 331 SPVFEY----LEKN-RMECFLIYFTDGMGDQ 356 (396)
T ss_pred cHHHHH----HHhh-cccceEEEEccCCCCc
Confidence 887654 3332 1226799999999654
No 91
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=95.68 E-value=0.12 Score=50.34 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=71.8
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHH-HHHHHHHhCC-------------CCCeEEEEEeCCCceeeec-ccccCCHHHH
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKN-ALSASLSKLN-------------PQDSFNIIAFNGETHLFSS-SMKLASQGTI 387 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~-al~~~l~~L~-------------~~d~~~Iv~F~~~~~~~~~-~~~~~~~~~~ 387 (591)
...+++|||||.+..|.. -|...|. -+.-+++.+. ....++||.|++....-.. .....-..+.
T Consensus 11 ~~~~~vVfvvEgTAalgp-y~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~ 89 (226)
T PF11265_consen 11 PPQAQVVFVVEGTAALGP-YWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSP 89 (226)
T ss_pred CccceEEEEEecchhhhh-hHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCH
Confidence 457899999999999965 5555443 3444555443 2356899999876321000 0011223467
Q ss_pred HHHHHHHhcCCCC-CC----CchHHHHHHHHHHhhcC---------CCCccEEEEEecCCC
Q 007752 388 INATQWLSSLVAG-GG----TNILLPLKQAIKLLSDT---------SESIPLIFLITDGTV 434 (591)
Q Consensus 388 ~~a~~~i~~l~a~-Gg----T~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~ 434 (591)
...++|+++++.. || +.+.+||..|++++... ....+.+||++--.+
T Consensus 90 ~~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP 150 (226)
T PF11265_consen 90 QKFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPP 150 (226)
T ss_pred HHHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCC
Confidence 7888999988765 33 34889999999988731 113578899987765
No 92
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=95.59 E-value=4.8 Score=45.49 Aligned_cols=173 Identities=20% Similarity=0.229 Sum_probs=97.6
Q ss_pred EEecCCCCCCCccCceEEEEEeCCc-CCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeeccc--------
Q 007752 312 YLFPGKSQSRKVFRKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSM-------- 379 (591)
Q Consensus 312 ~~~P~~~~~~~~~p~~vvfviD~Sg-SM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~-------- 379 (591)
++.|+.-....+.|..+||+||+|- ||...-...+.+++...+..++ +..+++|+.|++..+.|....
T Consensus 263 f~ap~~Y~~~~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~~~ 342 (861)
T COG5028 263 FLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQMLI 342 (861)
T ss_pred EecccceeeccCCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCccceee
Confidence 5567665545566899999999983 3433345555566666666553 478999999999976543110
Q ss_pred --------ccCC-----------HHHHHHHHHHHhcCCCC-CC--CchHHHHHHHHHHhhcCCCCccEEEEE-e-----c
Q 007752 380 --------KLAS-----------QGTIINATQWLSSLVAG-GG--TNILLPLKQAIKLLSDTSESIPLIFLI-T-----D 431 (591)
Q Consensus 380 --------~~~~-----------~~~~~~a~~~i~~l~a~-Gg--T~l~~aL~~a~~~l~~~~~~~~~Iill-T-----D 431 (591)
.+.. ..+++..++.+..+-.+ +. ..++.||+.|..++... ++ +.+.++ | -
T Consensus 343 vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~~-GG-kii~~~stlPn~G~ 420 (861)
T COG5028 343 VSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGT-GG-KIIVFLSTLPNMGI 420 (861)
T ss_pred ecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhcc-Cc-eEEEEeecCCCccc
Confidence 0111 11222344555555444 33 36899999998887653 33 344444 3 1
Q ss_pred CCCC----C-------hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCC
Q 007752 432 GTVG----D-------ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYD 488 (591)
Q Consensus 432 G~~~----~-------~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~ 488 (591)
|... . .+...+.+...+.+. ...+.+|...- ...+...|..+++.++|..++-..
T Consensus 421 Gkl~~r~d~e~~ll~c~d~fYk~~a~e~~k~-gIsvd~Flt~~-~yidvaTls~l~~~T~G~~~~Yp~ 486 (861)
T COG5028 421 GKLQLREDKESSLLSCKDSFYKEFAIECSKV-GISVDLFLTSE-DYIDVATLSHLCRYTGGQTYFYPN 486 (861)
T ss_pred ccccccccchhhhccccchHHHHHHHHHHHh-cceEEEEeccc-cccchhhhcchhhccCcceEEcCC
Confidence 3322 1 111122222222211 23344554422 235677789999999998776544
No 93
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.088 Score=53.41 Aligned_cols=135 Identities=19% Similarity=0.181 Sum_probs=82.3
Q ss_pred CCccCceEEEEEeCCcCCCcc---hHHHHHHHH-HHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhc
Q 007752 321 RKVFRKDVVFLVDVSGSMQGV---LLEQTKNAL-SASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 321 ~~~~p~~vvfviD~SgSM~g~---~i~~ak~al-~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
.++..+.+++.+|+|+||... .+-.++++. ...+-.+......-.++|.+..... |.. ..-.+.+...++++
T Consensus 423 a~ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnead~~~vaf~d~lte~-pft---kd~kigqv~~~~nn 498 (598)
T KOG4465|consen 423 AEPTGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEADSRCVAFCDELTEC-PFT---KDMKIGQVLDAMNN 498 (598)
T ss_pred CCCCCceEEEEEecchhhhhhhhccccchHHHHhhhheeeeccccceeEEEeccccccC-CCc---ccccHHHHHHHHhc
Confidence 456779999999999999752 122233332 2334445555566789999886543 222 23355666666766
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcC
Q 007752 397 LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVG 464 (591)
Q Consensus 397 l~a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~-~~~~~~~~v~~~~~~~~~~~~~I~tiGiG 464 (591)
+.+ |||+-.-++.+|-+. .-.....|++||.... .+-.....+++..+...-....+...|.-
T Consensus 499 i~~-g~tdcglpm~wa~en----nlk~dvfii~tdndt~ageihp~~aik~yrea~~i~dakliv~amq 562 (598)
T KOG4465|consen 499 IDA-GGTDCGLPMIWAQEN----NLKADVFIIFTDNDTFAGEIHPAEAIKEYREAMDIHDAKLIVCAMQ 562 (598)
T ss_pred CCC-CCCccCCceeehhhc----CCCccEEEEEecCcccccccCHHHHHHHHHHhcCCCcceEEEEEee
Confidence 554 678877777776542 2234578999998864 33344566676665544344566666653
No 94
>PF14415 DUF4424: Domain of unknown function (DUF4424)
Probab=95.36 E-value=0.63 Score=46.40 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=39.7
Q ss_pred EEEEEEEEEecccCCCceeeEEEEeecCC--------Ce----------eEEEEEEEECCEEEEEEEEe
Q 007752 101 FVAFNGSWRVHCIMAGRQCDCTIAVPLGE--------RG----------SLLGVEVEIDGRSYQSKLIS 151 (591)
Q Consensus 101 ~v~~~~~f~n~~~~~~~~~e~~y~fPL~~--------~a----------~V~~f~~~i~gk~i~~~v~~ 151 (591)
+|+|..+|.| +++..++....||||+ .+ .|.+|.+.||||-+..++..
T Consensus 2 ~I~V~Y~F~N---~t~~dv~~~VaFPlP~i~~~~~~d~~~~~p~~~~~n~i~~Fk~~VdGk~v~~q~~~ 67 (253)
T PF14415_consen 2 RIRVRYVFRN---PTDQDVTVTVAFPLPDISGSPENDFAIAIPDNDSDNFIKDFKTTVDGKPVKPQVHQ 67 (253)
T ss_pred EEEEEEEEeC---CCCCcEEEEEEEeCCCCCCCccccccccccccCCcCccceEEEEECCEEcCceeEE
Confidence 4778899999 6899999999999993 12 46669999999999888843
No 95
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=94.89 E-value=2.6 Score=40.32 Aligned_cols=146 Identities=12% Similarity=0.121 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHh-C--CCCCeEEEEE-eCCCceeeeccccc---------------------CCHHHHHHHHHHHhcC
Q 007752 343 LEQTKNALSASLSK-L--NPQDSFNIIA-FNGETHLFSSSMKL---------------------ASQGTIINATQWLSSL 397 (591)
Q Consensus 343 i~~ak~al~~~l~~-L--~~~d~~~Iv~-F~~~~~~~~~~~~~---------------------~~~~~~~~a~~~i~~l 397 (591)
....-+.+.-||+. | ..+.|+.+++ ++...+.+.|...+ .+...+.+..+.++.-
T Consensus 43 ~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~ 122 (296)
T COG5242 43 RDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHP 122 (296)
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCc
Confidence 44455555555543 2 4567888765 45555554443222 2222344444444432
Q ss_pred CCC-CCCchHHHHHHHHHHhhcCCCC---ccEEEEEec-CCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 007752 398 VAG-GGTNILLPLKQAIKLLSDTSES---IPLIFLITD-GTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (591)
Q Consensus 398 ~a~-GgT~l~~aL~~a~~~l~~~~~~---~~~IillTD-G~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL 472 (591)
... -.+.+..|+..++......... ..+|+++|= |...- .+.+..+. -+-.+...+++|..+.|+.+ ..+|
T Consensus 123 ~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~d~~-~qYip~mn-CiF~Aqk~~ipI~v~~i~g~--s~fl 198 (296)
T COG5242 123 HKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGRDRK-DQYIPYMN-CIFAAQKFGIPISVFSIFGN--SKFL 198 (296)
T ss_pred ccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCchhh-hhhchhhh-heeehhhcCCceEEEEecCc--cHHH
Confidence 222 4578888888888877654322 124555554 63211 11111211 11122345688888888774 6789
Q ss_pred HHHHHhCCCEEEEcCCCCch
Q 007752 473 QILAQIGRGYYDSAYDPGSV 492 (591)
Q Consensus 473 ~~LA~~~~G~~~~v~~~~~l 492 (591)
.+-+..+||.|..+.+.+.+
T Consensus 199 ~Q~~daTgG~Yl~ve~~eGl 218 (296)
T COG5242 199 LQCCDATGGDYLTVEDTEGL 218 (296)
T ss_pred HHHhhccCCeeEeecCchhH
Confidence 99999999999999988654
No 96
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=94.23 E-value=0.41 Score=51.73 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=71.1
Q ss_pred CceEEEEEeCCcCCCc-----chHHHHHHHHHHHH-HhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC
Q 007752 325 RKDVVFLVDVSGSMQG-----VLLEQTKNALSASL-SKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 325 p~~vvfviD~SgSM~g-----~~i~~ak~al~~~l-~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..++++++|.|.||.. .+++.+..++..+. ..+..+|++++..|+.....+.+. ....+.+..++..+....
T Consensus 224 ~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~p--~~G~~~l~~~l~~l~~~~ 301 (416)
T COG1721 224 GRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIPP--SRGRRHLARILKALALLR 301 (416)
T ss_pred CceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeCC--CcchHHHHHHHHHhhccC
Confidence 6899999999999994 58888887766554 556789999999999876544332 245677888888787777
Q ss_pred CCCC-CchHHHHHHHHHHhhcCCCCccEEEEEecCCC
Q 007752 399 AGGG-TNILLPLKQAIKLLSDTSESIPLIFLITDGTV 434 (591)
Q Consensus 399 a~Gg-T~l~~aL~~a~~~l~~~~~~~~~IillTDG~~ 434 (591)
..+. |+...+... ...+ +...+.++++||=..
T Consensus 302 ~~~~~~~~~~~~~~-~~~l---~~~~~~~~~~~~l~~ 334 (416)
T COG1721 302 PAPEETDYIRRVSK-LDFL---PPRRPLVILITDLAR 334 (416)
T ss_pred CCCcchhHHHHhhh-hhcc---CcccceEEEeehhhc
Confidence 7744 444444322 1222 234456777777664
No 97
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=11 Score=42.29 Aligned_cols=174 Identities=21% Similarity=0.212 Sum_probs=102.3
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeee------------cccccCCHHHHHHH-
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS------------SSMKLASQGTIINA- 390 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~------------~~~~~~~~~~~~~a- 390 (591)
.|.-++||||+- |..+.++.+|+++...++.|+++..+++|+|+..+++.. ......+.+.+.+.
T Consensus 120 ~ppvf~fVvDtc--~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~~~L 197 (745)
T KOG1986|consen 120 SPPVFVFVVDTC--MDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLLDLL 197 (745)
T ss_pred CCceEEEEEeec--cChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHHHHh
Confidence 466789999986 556789999999999999999999999999999876432 11112222222211
Q ss_pred ------------------------------HHHHhcCCC------CCC---CchHHHHHHHHHHhhcC-CCCccEEEEEe
Q 007752 391 ------------------------------TQWLSSLVA------GGG---TNILLPLKQAIKLLSDT-SESIPLIFLIT 430 (591)
Q Consensus 391 ------------------------------~~~i~~l~a------~Gg---T~l~~aL~~a~~~l~~~-~~~~~~IillT 430 (591)
.+.++.++. .|- -..+.||..|..++... ++....|++++
T Consensus 198 ~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~ 277 (745)
T KOG1986|consen 198 GLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGCFPNTGARIVLFA 277 (745)
T ss_pred cCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhcccCCCCcceEEEec
Confidence 111222221 111 12455677777666543 34556888998
Q ss_pred cCCCC-----------------------Ch----h---hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCC
Q 007752 431 DGTVG-----------------------DE----R---GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR 480 (591)
Q Consensus 431 DG~~~-----------------------~~----~---~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~ 480 (591)
-|--+ +. . ...+.+.+.+.+ .++-+.||+-++-. +.-..|+.+++.+|
T Consensus 278 gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~-~ghvlDifa~~lDQ-vGi~EMk~l~~~TG 355 (745)
T KOG1986|consen 278 GGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLAN-QGHVLDIFAAALDQ-VGILEMKPLVESTG 355 (745)
T ss_pred cCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHh-CCceEeeeeeeccc-cchHHHHHHhhcCC
Confidence 88422 00 0 011222222221 23445677655532 34557899999999
Q ss_pred CEEEEcCCCC--chHHHHHHHHH
Q 007752 481 GYYDSAYDPG--SVDYRIRRFFT 501 (591)
Q Consensus 481 G~~~~v~~~~--~l~~~l~~~l~ 501 (591)
|....-++.+ -....+++++.
T Consensus 356 G~lvl~dsF~~s~Fk~sfqR~f~ 378 (745)
T KOG1986|consen 356 GVLVLGDSFNTSIFKQSFQRIFT 378 (745)
T ss_pred cEEEEecccchHHHHHHHHHHhc
Confidence 9988766654 23444444444
No 98
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=92.09 E-value=0.46 Score=51.16 Aligned_cols=188 Identities=18% Similarity=0.183 Sum_probs=97.9
Q ss_pred eEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHH---HHHHHHHhCCCCCeEEEEEeCCCcee-ee-------
Q 007752 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKN---ALSASLSKLNPQDSFNIIAFNGETHL-FS------- 376 (591)
Q Consensus 308 ~f~~~~~P~~~~~~~~~p~~vvfviD~SgSM~g~~i~~ak~---al~~~l~~L~~~d~~~Iv~F~~~~~~-~~------- 376 (591)
.|.+.+.|.. -.|.|+.+++|.|+||.+ .++..|. .|..-++.+..+-|+++=+|-+.... |.
T Consensus 90 ~f~v~~~~a~-----~yPvDLYyLmDlS~Sm~d-dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l 163 (426)
T PF00362_consen 90 TFNVTVRPAE-----DYPVDLYYLMDLSYSMKD-DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKL 163 (426)
T ss_dssp EEEEEEEBSS-----S--EEEEEEEE-SGGGHH-HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCH
T ss_pred EEEEEEeecc-----ccceeEEEEeechhhhhh-hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhh
Confidence 4666666654 369999999999999986 5555554 34455666777889999999877421 10
Q ss_pred --cc---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HHhhcCCCCccEEEEEecC
Q 007752 377 --SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLITDG 432 (591)
Q Consensus 377 --~~---------------~~~~~~~~~~~a~~~i~~l~a~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillTDG 432 (591)
|. ..+. .++..+..+.+++..-.|+-+ -.+||-.|. +.+.=+.+..+.+|+.||+
T Consensus 164 ~~pc~~~~~~c~~~~~f~~~l~L-t~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~ 242 (426)
T PF00362_consen 164 KNPCPSKNPNCQPPFSFRHVLSL-TDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDA 242 (426)
T ss_dssp HSTSCCTTS--B---SEEEEEEE-ES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS
T ss_pred cCcccccCCCCCCCeeeEEeecc-cchHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCC
Confidence 00 0001 135555666666544333222 123333332 1111124567899999998
Q ss_pred CCC--------------C------hh-----------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCC
Q 007752 433 TVG--------------D------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRG 481 (591)
Q Consensus 433 ~~~--------------~------~~-----------~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G 481 (591)
... | .. .....+.+.+.+. .-..||++.-. -...-+.|+..=.|
T Consensus 243 ~fH~agDg~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~--~i~~IFAVt~~---~~~~Y~~L~~~i~~ 317 (426)
T PF00362_consen 243 GFHFAGDGKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSEN--NINPIFAVTKD---VYSIYEELSNLIPG 317 (426)
T ss_dssp -B--TTGGGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHT--TEEEEEEEEGG---GHHHHHHHHHHSTT
T ss_pred ccccccccccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHc--CCEEEEEEchh---hhhHHHHHhhcCCC
Confidence 641 0 00 1234445544432 12457776322 23355777776555
Q ss_pred EEEE-c-CCCCchHHHHHHHHHHhccce
Q 007752 482 YYDS-A-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 482 ~~~~-v-~~~~~l~~~l~~~l~~~~~p~ 507 (591)
...- . .|...+-+.+.+.++++.+.+
T Consensus 318 s~vg~L~~dSsNIv~LI~~aY~~i~s~V 345 (426)
T PF00362_consen 318 SSVGELSSDSSNIVQLIKEAYNKISSKV 345 (426)
T ss_dssp EEEEEESTTSHTHHHHHHHHHHHHCTEE
T ss_pred ceecccccCchhHHHHHHHHHHHHhheE
Confidence 5443 3 334457777788888776543
No 99
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=89.81 E-value=11 Score=37.44 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=89.5
Q ss_pred cCceEEEEEeCCcCCCc--------chHHHHHHHHHHHHHh-C--CCCCeEEEEEeCCCcee-eeccc------------
Q 007752 324 FRKDVVFLVDVSGSMQG--------VLLEQTKNALSASLSK-L--NPQDSFNIIAFNGETHL-FSSSM------------ 379 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g--------~~i~~ak~al~~~l~~-L--~~~d~~~Iv~F~~~~~~-~~~~~------------ 379 (591)
.|.-++++||.+.=-+| ..+...-+++..|++. | ..+.++.+++..++... +.+..
T Consensus 22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 45668899999872222 2455566677666653 2 45779999998665321 11100
Q ss_pred ------------ccCCHHHHHHHHHHHhcC-CCC--CCCchHHHHHHHHHHhhcC------CCCccEEEEEecCCCCChh
Q 007752 380 ------------KLASQGTIINATQWLSSL-VAG--GGTNILLPLKQAIKLLSDT------SESIPLIFLITDGTVGDER 438 (591)
Q Consensus 380 ------------~~~~~~~~~~a~~~i~~l-~a~--GgT~l~~aL~~a~~~l~~~------~~~~~~IillTDG~~~~~~ 438 (591)
...+..-+++..+.+..- ..+ .-|-+..|+..++...... ..-..+|+++|=+.....+
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~q 181 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRALQ 181 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHHhh
Confidence 001111122222222211 111 1455555555555443221 1123467888876643221
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch
Q 007752 439 GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV 492 (591)
Q Consensus 439 ~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l 492 (591)
....+ +.+-.+.+.+++|-++.+|++ ..+|++-+..|||.|..+..++.+
T Consensus 182 -yi~~M-NciFaAqKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~gL 231 (314)
T KOG2487|consen 182 -YIPYM-NCIFAAQKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDGL 231 (314)
T ss_pred -hhhHH-HHHHHHHhcCceeEEEEecCC--chHHHHHHhhcCCeeEecCCcchH
Confidence 11111 111122245688999989886 679999999999999999887654
No 100
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=83.71 E-value=12 Score=46.59 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=73.5
Q ss_pred ceEEEEEeCCcCCCcch-HHHHHHHHHH---HHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCC-
Q 007752 326 KDVVFLVDVSGSMQGVL-LEQTKNALSA---SLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG- 400 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~-i~~ak~al~~---~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~- 400 (591)
-.|.+-||-|.||+..+ -..|-+.+.. .|..|.- -.++|+.||...+.+.+.-.+.+.+.-.++.. .+...
T Consensus 4393 yqvmisiddsksmses~~~~la~etl~lvtkals~le~-g~iav~kfge~~~~lh~fdkqfs~esg~~~f~---~f~feq 4468 (4600)
T COG5271 4393 YQVMISIDDSKSMSESGSTVLALETLALVTKALSLLEV-GQIAVMKFGEQPELLHPFDKQFSSESGVQMFS---HFTFEQ 4468 (4600)
T ss_pred eEEEEEecccccccccCceeeehHHHHHHHHHHHHHhh-ccEEEEecCCChhhhCchhhhhcchHHHHHHH---hhchhc
Confidence 35788899999998642 1223333332 2333433 47899999999887666555555554444433 33433
Q ss_pred CCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhc
Q 007752 401 GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTN 450 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~v~~~~~~ 450 (591)
..||..+-..+.++.+... .+-...=|++|||.-.+.+.+...++++.++
T Consensus 4469 s~tnv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgicedhdsi~kllrra~e~ 4523 (4600)
T COG5271 4469 SNTNVLALADASMKCFNYANTASHHDIRQLEIIISDGICEDHDSIRKLLRRAQEE 4523 (4600)
T ss_pred ccccHHHHHHHHHHHHHHhhhhcccchheeEEEeecCcccchHHHHHHHHHhhhc
Confidence 6688765444444444322 1222345899999988888887777776443
No 101
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=83.25 E-value=4.1 Score=45.99 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=42.3
Q ss_pred cceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcc--hHHHHHHHHHHHHHhCCCCCeEEEEEeCCCc
Q 007752 306 RQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGV--LLEQTKNALSASLSKLNPQDSFNIIAFNGET 372 (591)
Q Consensus 306 ~~~f~~~~~P~~~~~~~~~p~~vvfviD~SgSM~g~--~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~ 372 (591)
...|.+.+.+... .|.|+.+++|.|.||..+ ++..+-..|..-++.|..+-|++.=+|-+..
T Consensus 118 ~~~f~l~~r~a~~-----yPVDLYyLMDlS~SM~DDl~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK~ 181 (783)
T KOG1226|consen 118 EQTFQLKVRQAED-----YPVDLYYLMDLSYSMKDDLENLKSLGTDLAREMRKLTSNFRLGFGSFVDKT 181 (783)
T ss_pred ceeEEEEEeeccC-----CCeeEEEEeecchhhhhhHHHHHHHHHHHHHHHHHHhccCCccccchhccc
Confidence 3467776655443 689999999999999873 3334444555566667777777777776653
No 102
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=70.40 E-value=73 Score=35.39 Aligned_cols=134 Identities=17% Similarity=0.111 Sum_probs=71.7
Q ss_pred ceEEEEEeCCcCCCc------chHHHHHHHHHHHHHh--C--CCCCeEEEEEeCCCceeee----------cccccCCHH
Q 007752 326 KDVVFLVDVSGSMQG------VLLEQTKNALSASLSK--L--NPQDSFNIIAFNGETHLFS----------SSMKLASQG 385 (591)
Q Consensus 326 ~~vvfviD~SgSM~g------~~i~~ak~al~~~l~~--L--~~~d~~~Iv~F~~~~~~~~----------~~~~~~~~~ 385 (591)
...+|++|.+.||.- ..+++++.++...+.. + +..|.|+++.|+-+..... ....+....
T Consensus 5 e~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~~tp 84 (669)
T KOG2326|consen 5 ESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPVTTP 84 (669)
T ss_pred cceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecccch
Confidence 346777799999974 3789999888877642 2 2468999999997753210 111111222
Q ss_pred HHHHHHHHHh-cCCCC-CCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeE
Q 007752 386 TIINATQWLS-SLVAG-GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRI 458 (591)
Q Consensus 386 ~~~~a~~~i~-~l~a~-GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I 458 (591)
........+. .++.+ --.++..||-....++... +...+.|+..++|..+...... . .+.+. ..++.+
T Consensus 85 af~~l~k~~~~~~qqns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~-i-ve~l~---~~didL 159 (669)
T KOG2326|consen 85 AFIGLIKRLKQYCQQNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF-I-VEDLT---DEDIDL 159 (669)
T ss_pred hhHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH-H-HHHHh---hcCcce
Confidence 2222333333 22322 2234555665555544321 2334566667777665444333 2 22222 224667
Q ss_pred EEEEcC
Q 007752 459 CTFGVG 464 (591)
Q Consensus 459 ~tiGiG 464 (591)
-++|+.
T Consensus 160 ~~~gld 165 (669)
T KOG2326|consen 160 LTEGLD 165 (669)
T ss_pred eEeecc
Confidence 777764
No 103
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=65.94 E-value=50 Score=32.31 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC
Q 007752 407 LPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYC 467 (591)
Q Consensus 407 ~aL~~a~~~l~~~~~~~~~IillTDG~~~~-~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~ 467 (591)
++|..+++...+..+..-.+=|+|||.+.. ...+...++ .+...+-..+.||+|.=|.++
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~-~a~~~gv~~V~vH~f~DGRDt 74 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIK-LAKKQGVKKVYVHAFTDGRDT 74 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHH-HHHHTT-SEEEEEEEE-SSSS
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHH-HHHHcCCCEEEEEEecCCCCC
Confidence 455555555554334444566777777643 233333332 222222233556666666554
No 104
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=58.64 E-value=28 Score=38.36 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=44.6
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCcee
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHL 374 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~ 374 (591)
..|.-+.||+|.-. .+..+...|+++..-+..|+++.-+++|+|++...+
T Consensus 120 ~~ppvf~fvvD~~~--D~e~l~~LkdslivslsllppeaLvglItygt~i~v 169 (755)
T COG5047 120 ILPPVFFFVVDACC--DEEELTALKDSLIVSLSLLPPEALVGLITYGTSIQV 169 (755)
T ss_pred cCCceEEEEEEeec--CHHHHHHHHHHHHHHHhcCCccceeeEEEecceeEE
Confidence 46788999999876 678999999999999999999999999999998754
No 105
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.05 E-value=1.1e+02 Score=33.10 Aligned_cols=83 Identities=11% Similarity=0.160 Sum_probs=51.6
Q ss_pred eEEEEEEEEEEecccCCCceeeEEEEeecCC--CeeEEEEEEEECCEEEEEEE-EehhhhhhhhhhccccCCccceecCc
Q 007752 99 TAFVAFNGSWRVHCIMAGRQCDCTIAVPLGE--RGSLLGVEVEIDGRSYQSKL-ISLDDAEYKENVGKSKGDGRYLKGQI 175 (591)
Q Consensus 99 ~a~v~~~~~f~n~~~~~~~~~e~~y~fPL~~--~a~V~~f~~~i~gk~i~~~v-~~k~~a~~~~~~~~~~~~~~ll~~~~ 175 (591)
.+++++..+..| .++.+ ...|.|.||. ...+..+++..+++...... +++.+.. .+. .-+.
T Consensus 17 ~vk~~~~i~i~N---~g~~p-~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~ 80 (432)
T PF04597_consen 17 YVKETIEITIKN---IGDEP-VSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVN-------SGS-----EIKY 80 (432)
T ss_pred EEEEEEEEEEEE---CCCCC-ceEEEEEECchhhccEEEEEEEECCCcccccccccccccc-------CCC-----Ccce
Confidence 567788888888 56666 3445555555 45788888887765443333 1111100 000 0123
Q ss_pred eEEEcc-CCCCCCEEEEEEEEEE
Q 007752 176 YTLRIP-QVDGGSTLSIKVNWSQ 197 (591)
Q Consensus 176 F~~~v~-~i~~~~~v~v~i~y~q 197 (591)
|++.++ +|.||++++|+++|.-
T Consensus 81 ~~i~L~~pl~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 81 YEITLPKPLAPGEKVTLTVEYVL 103 (432)
T ss_pred EEEECCCCCCCCCEEEEEEEEEe
Confidence 888888 5999999999999974
No 106
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=48.11 E-value=23 Score=28.62 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=29.4
Q ss_pred CceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhC-CCCCeEE
Q 007752 325 RKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL-NPQDSFN 364 (591)
Q Consensus 325 p~~vvfviD~SgSM~g-----~~i~~ak~al~~~l~~L-~~~d~~~ 364 (591)
..++.+++|.+++|.. .+++.+...+..++..+ ..++.|+
T Consensus 40 ~~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~g~~v~ 85 (86)
T PF01882_consen 40 SQPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQGDPVG 85 (86)
T ss_pred CCcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4789999999999975 67777777777666544 3455554
No 107
>PRK05434 phosphoglyceromutase; Provisional
Probab=40.36 E-value=1.9e+02 Score=32.04 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 406 ~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
.++|..+++...+..+..-.+=|+|||.+... ..+...++.+ ...+-..+.||+|.=|.++.
T Consensus 95 n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a-~~~g~~~v~vH~~~DGRD~~ 157 (507)
T PRK05434 95 NPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELA-KEEGVKKVYVHAFLDGRDTP 157 (507)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHH-HHcCCCEEEEEEecCCCCCC
Confidence 44555555555443344446678888887543 3444444333 33333356777777776654
No 108
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=39.40 E-value=42 Score=38.35 Aligned_cols=9 Identities=22% Similarity=0.382 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q 007752 31 VMPPGMTRQ 39 (591)
Q Consensus 31 ~~~~~~~~~ 39 (591)
+|+|+|..+
T Consensus 545 PppPPlpgg 553 (1102)
T KOG1924|consen 545 PPPPPLPGG 553 (1102)
T ss_pred CCCCCCCCC
Confidence 334444443
No 109
>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]
Probab=34.96 E-value=1.9e+02 Score=31.91 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=54.7
Q ss_pred eEEEEEEEEEEecccCCCc-eeeEEEEeecCCCeeEEEEEE-EECCEEEEEEEEehhhhhhhhhhccccCCccceecCce
Q 007752 99 TAFVAFNGSWRVHCIMAGR-QCDCTIAVPLGERGSLLGVEV-EIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIY 176 (591)
Q Consensus 99 ~a~v~~~~~f~n~~~~~~~-~~e~~y~fPL~~~a~V~~f~~-~i~gk~i~~~v~~k~~a~~~~~~~~~~~~~~ll~~~~F 176 (591)
.+.++.+..+.| .++. .-|-.|.||=+.++.+.-+.+ ..+|+.- +.+.-.. +....++.+ ...|
T Consensus 46 ivK~tt~l~i~N---~g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~-~~l~~s~------~~~~~~~~~----~~~y 111 (602)
T KOG2291|consen 46 IVKVTTELSIEN---IGSEPATEYLLAFEKELGASLAFLSVAFTEGKKK-TLLKLSV------NPPKKDGAS----ERVY 111 (602)
T ss_pred hhhheeEEEEEe---cCCCchheEEEeccCccccceeEEEEeeccCccc-ccccccc------CCcccCCCc----cceE
Confidence 577888889998 4555 488999999999999999954 3455432 1111000 001111111 1588
Q ss_pred EEEccC-CCCCCEEEEEEEEE
Q 007752 177 TLRIPQ-VDGGSTLSIKVNWS 196 (591)
Q Consensus 177 ~~~v~~-i~~~~~v~v~i~y~ 196 (591)
++.+.+ |.||+++++.|.+.
T Consensus 112 ~v~lp~pl~pge~vTl~V~~~ 132 (602)
T KOG2291|consen 112 TVTLPNPLSPGEKVTLIVEAV 132 (602)
T ss_pred EEeCCCCCCCCceEEEEEEee
Confidence 998885 99999999888764
No 110
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=31.81 E-value=3.2e+02 Score=25.07 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=30.0
Q ss_pred HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEeeEEE
Q 007752 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTL 513 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~~p~~~~i~l 513 (591)
+..+|+.-|..+..+.+.++++..+.+.++. ..|.+-++.+
T Consensus 131 ~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~i 171 (172)
T cd02004 131 YDLVAEAFGGKGELVTTPEELKPALKRALAS-GKPALINVII 171 (172)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHHHc-CCCEEEEEEc
Confidence 4678888888888888888888887776653 4566666544
No 111
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=29.76 E-value=4.1e+02 Score=29.48 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 406 ~~aL~~a~~~l~~~~~~~~~IillTDG~~~~-~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
..+|..+++...+..+..-.+=|+|||.+.. ...+...++.+ .+.+-..+.||+|.=|.++.
T Consensus 91 n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a-~~~g~~~v~vH~~~DGRD~~ 153 (501)
T TIGR01307 91 NPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELA-AERGIEKVVLHAFTDGRDTA 153 (501)
T ss_pred CHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHH-HHcCCCeEEEEEecCCCCCC
Confidence 3445555555443334444667888888753 33444444333 33333356777777676554
No 112
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=29.05 E-value=58 Score=27.38 Aligned_cols=38 Identities=16% Similarity=0.471 Sum_probs=30.6
Q ss_pred ceecCceEEEccCCCCCCEEEEEEEEEEeeecccCeEEEEEeeeC
Q 007752 170 YLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTF 214 (591)
Q Consensus 170 ll~~~~F~~~v~~i~~~~~v~v~i~y~q~L~~~~g~~~~~lp~~~ 214 (591)
++++.+|.+++-+|.-++.+.|.+. ++|+|.+.+|..+
T Consensus 66 I~~pG~YeiNl~~Lld~~~iVval~-------EeG~Y~I~LP~~~ 103 (112)
T COG3364 66 ILRPGVYEINLESLLDRDEIVVALQ-------EEGRYFIHLPSLL 103 (112)
T ss_pred EecCceEEEehhhhccCCceEEEEc-------cCCeEEEEChhHh
Confidence 4589999999999999998777653 4899987776654
No 113
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=28.95 E-value=1.2e+02 Score=27.93 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=37.3
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEE
Q 007752 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIA 367 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~ 367 (591)
++.-+||+|-.|+|.....+..++-+..+|.-..++|.+=+..
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rL 138 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEISAILSVATPEDEVLVRL 138 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 4567899999999999999999999999999999999876543
No 114
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.71 E-value=67 Score=30.26 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=48.9
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHH---------HHhc
Q 007752 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQ---------WLSS 396 (591)
Q Consensus 326 ~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~---------~i~~ 396 (591)
.-+|||+|.+.- .++..+|+-+..++..-. -...-+..|++.-..- -..+...+.+.+. +|..
T Consensus 86 ~~lIfVvDS~Dr---~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKqD~~----~als~~ei~~~L~l~~l~~~~w~iq~ 157 (181)
T KOG0070|consen 86 QGLIFVVDSSDR---ERIEEAKEELHRMLAEPE-LRNAPLLVFANKQDLP----GALSAAEITNKLGLHSLRSRNWHIQS 157 (181)
T ss_pred cEEEEEEeCCcH---HHHHHHHHHHHHHHcCcc-cCCceEEEEechhhcc----ccCCHHHHHhHhhhhccCCCCcEEee
Confidence 459999998865 478889988888877643 2355677787664321 1122333333322 1111
Q ss_pred CCCCCCCchHHHHHHHHHHhh
Q 007752 397 LVAGGGTNILLPLKQAIKLLS 417 (591)
Q Consensus 397 l~a~GgT~l~~aL~~a~~~l~ 417 (591)
-.+.-|.-+++++++..+.+.
T Consensus 158 ~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 158 TCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ccccccccHHHHHHHHHHHHh
Confidence 223456667777777666554
No 115
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=27.25 E-value=1.8e+02 Score=23.52 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=32.3
Q ss_pred EEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehhhhhhh-hhhccccCCccceecCceEEEc
Q 007752 102 VAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYK-ENVGKSKGDGRYLKGQIYTLRI 180 (591)
Q Consensus 102 v~~~~~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~-~~~~~~~~~~~ll~~~~F~~~v 180 (591)
+.++.+..| +++.+++..| | .|+.++-.|++++....+ +. +..+|+.-+
T Consensus 2 v~~~l~v~N---~s~~~v~l~f--~--------------sgq~~D~~v~d~~g~~vwrwS-----------~~~~FtQal 51 (82)
T PF12690_consen 2 VEFTLTVTN---NSDEPVTLQF--P--------------SGQRYDFVVKDKEGKEVWRWS-----------DGKMFTQAL 51 (82)
T ss_dssp EEEEEEEEE----SSS-EEEEE--S--------------SS--EEEEEE-TT--EEEETT-----------TT-------
T ss_pred EEEEEEEEe---CCCCeEEEEe--C--------------CCCEEEEEEECCCCCEEEEec-----------CCchhhhee
Confidence 445566677 5666666433 2 355566566644432211 00 234555545
Q ss_pred c--CCCCCCEEEEEEEEEEeeecccCeEEE
Q 007752 181 P--QVDGGSTLSIKVNWSQKLTYEEGQFCL 208 (591)
Q Consensus 181 ~--~i~~~~~v~v~i~y~q~L~~~~g~~~~ 208 (591)
. .|+||++...+.+|.+.-.. .|.|.+
T Consensus 52 ~~~~l~pGe~~~~~~~~~~~~~~-~G~Y~~ 80 (82)
T PF12690_consen 52 QEETLEPGESLTYEETWDLKDLS-PGEYTL 80 (82)
T ss_dssp EEEEE-TT-EEEEEEEESS-----SEEEEE
T ss_pred eEEEECCCCEEEEEEEECCCCCC-CceEEE
Confidence 4 38999988888888644222 577754
No 116
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=26.70 E-value=1.2e+02 Score=23.90 Aligned_cols=32 Identities=13% Similarity=0.384 Sum_probs=17.7
Q ss_pred ccCCCCCCEEEEEEEEEEeeecccCeEEEEEe
Q 007752 180 IPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVP 211 (591)
Q Consensus 180 v~~i~~~~~v~v~i~y~q~L~~~~g~~~~~lp 211 (591)
+..|+||+++.+.++-.-+-....|.|.+.+-
T Consensus 43 ~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 43 VPSLPPGESVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp E--B-TTSEEEEEEEEEE-TT--SEEEEEEEE
T ss_pred cccCCCCCEEEEEEEEECCCCCCCceEEEEEE
Confidence 33688888888777766555555677765443
No 117
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=25.32 E-value=4.4e+02 Score=22.69 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=53.7
Q ss_pred EEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEE--ECCEEEEEEEEehhhhhhhhhhccccCCccceecCceE
Q 007752 100 AFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVE--IDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYT 177 (591)
Q Consensus 100 a~v~~~~~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~--i~gk~i~~~v~~k~~a~~~~~~~~~~~~~~ll~~~~F~ 177 (591)
+.+++.+...-+ -..+.|.+-.=.|=..++--+..-++. +||.+-.-+|+++..-.. .-++.--|-+.++.|+
T Consensus 16 ~~~~ieme~n~n-Y~~sDPF~N~rLFcVs~Die~L~aEv~f~mDGe~~iVEiKd~~~dev----LWsn~~~~~V~~dt~t 90 (132)
T PF15417_consen 16 AKTTIEMEMNAN-YSDSDPFENGRLFCVSEDIEALDAEVYFQMDGESGIVEIKDRKTDEV----LWSNTWNGKVSGDTFT 90 (132)
T ss_pred ccEEEEEEeccC-cCcCCccccceEEEEecchheeeeEEEEEEcCccceEEeccCCccce----eeccccccccccceEE
Confidence 345555544321 145556665556666666555555443 588777778877654321 1111222445688999
Q ss_pred EEccCCCCCCEEEEEEE
Q 007752 178 LRIPQVDGGSTLSIKVN 194 (591)
Q Consensus 178 ~~v~~i~~~~~v~v~i~ 194 (591)
+++-||..+.+-.|+++
T Consensus 91 isL~nlqk~kEY~V~ft 107 (132)
T PF15417_consen 91 ISLNNLQKEKEYVVCFT 107 (132)
T ss_pred EEhhhcccCceEEEEEe
Confidence 99999999887666655
No 118
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=25.31 E-value=7.2e+02 Score=27.11 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.0
Q ss_pred EEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehhhh
Q 007752 101 FVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDA 155 (591)
Q Consensus 101 ~v~~~~~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a 155 (591)
.+++...|+- .++...+.-|+||.|+|.-- +.+...|-.-...+-...+.
T Consensus 73 ~~~i~a~w~s---nn~~~A~p~f~~Pvp~G~~s--V~isceG~q~v~~~gg~~dg 122 (465)
T PF01690_consen 73 WVNIDAGWYS---NNSVKAIPMFVFPVPKGKWS--VEISCEGYQAVSSIGGPNDG 122 (465)
T ss_pred eEEecceeEe---cCcceeeeEEEEecCCceEE--EEEEecceecccccCCCCCC
Confidence 4677778876 36677889999999999763 34444564333333333333
No 119
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.89 E-value=1.2e+02 Score=27.38 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=25.1
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHh
Q 007752 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSK 356 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~ 356 (591)
..-++||+|.+.| ++++.|++-+..+++.
T Consensus 85 tqglIFV~Dsa~~---dr~eeAr~ELh~ii~~ 113 (180)
T KOG0071|consen 85 TQGLIFVVDSADR---DRIEEARNELHRIIND 113 (180)
T ss_pred CceEEEEEeccch---hhHHHHHHHHHHHhCC
Confidence 4579999999988 6899999999988865
No 120
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=23.93 E-value=2.9e+02 Score=26.65 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC--CHHHHHHHHHhCCCE
Q 007752 405 ILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC--NHYFLQILAQIGRGY 482 (591)
Q Consensus 405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~--~~~lL~~LA~~~~G~ 482 (591)
+.+.|+.|++.-- ....+..+.+|-|. |...+...+++ .....++.|++|++... +...-+.+|+.-+-.
T Consensus 2 ~r~~l~~av~~rl--~~~~~i~~~LSGGl--DSs~i~~~~~~----~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~ 73 (255)
T PF00733_consen 2 LRELLEEAVARRL--RSDKPIGILLSGGL--DSSAIAALAAR----QGGPPIKTFTIGFEDDDYDEREYARKVARHLGLE 73 (255)
T ss_dssp HHHHHHHHHHHHC--GCTSEEEEE--SSH--HHHHHHHHHHH----TCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHHHHH--hcCCCEEEECCCCh--hHHHHHHHHHH----hhCCceeEEEEEcCCCcchhHHHHHHHhcccccc
Confidence 4566777776532 24567889999998 33334444333 22345778888887765 566788888887777
Q ss_pred EEEc-CCCCchHHHHHHHHHHhccce
Q 007752 483 YDSA-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 483 ~~~v-~~~~~l~~~l~~~l~~~~~p~ 507 (591)
+..+ .+.+++...+...+.....|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~p~ 99 (255)
T PF00733_consen 74 HHEIELDPEDLLDNLEDIIWRLDGPS 99 (255)
T ss_dssp EEEEEE-HHHHHHHHHHHHHHHT---
T ss_pred cceeeechhhHHHhHHHHHHHHhCCc
Confidence 5443 333445454555555544443
No 121
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=21.77 E-value=8.2e+02 Score=27.52 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCCCccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 407 LPLKQAIKLLSDTSESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 407 ~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
.+|..+++... .+..-.+=|+|||.+... +.+...++.+ ...+-..+.||+|.=|.+..
T Consensus 115 ~~l~~~~~~~~--~~~lHl~GL~SdGGVHSh~~Hl~al~~~a-~~~gv~~v~vH~f~DGRDt~ 174 (558)
T PLN02538 115 EGFKYIKEAFA--TGTLHLIGLLSDGGVHSRLDQLQLLLKGA-AERGAKRIRVHVLTDGRDVP 174 (558)
T ss_pred HHHHHHHHHhc--CCeeEEEEeccCCCcccHHHHHHHHHHHH-HHcCCCeEEEEEEcCCCCCC
Confidence 34444444432 233445668888887543 3444444333 33333356677776666543
No 122
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=20.40 E-value=1.6e+02 Score=23.92 Aligned_cols=30 Identities=20% Similarity=0.624 Sum_probs=20.5
Q ss_pred EEccCCCCCCEEEEEEEEEEeeecccCeEEEEE
Q 007752 178 LRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSV 210 (591)
Q Consensus 178 ~~v~~i~~~~~v~v~i~y~q~L~~~~g~~~~~l 210 (591)
..|+.|+||+...+.++|.-. ..|.|.+.+
T Consensus 52 ~~i~~L~~g~~~~v~~~~~~~---~~G~~~i~~ 81 (101)
T PF07705_consen 52 VTIPSLAPGESETVTFTWTPP---SPGSYTIRV 81 (101)
T ss_dssp EEESEB-TTEEEEEEEEEE-S---S-CEEEEEE
T ss_pred EEECCcCCCcEEEEEEEEEeC---CCCeEEEEE
Confidence 345789999999999999866 567776443
Done!