Query 007752
Match_columns 591
No_of_seqs 403 out of 2160
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:36:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 99.9 2.6E-24 9.1E-29 231.9 24.8 190 323-516 75-270 (464)
2 1ijb_A VON willebrand factor; 99.9 2.9E-21 9.8E-26 185.9 22.2 175 324-505 12-197 (202)
3 1q0p_A Complement factor B; VO 99.9 1.6E-21 5.4E-26 190.1 15.9 180 323-503 13-219 (223)
4 3ibs_A Conserved hypothetical 99.9 8.5E-21 2.9E-25 184.4 20.1 175 322-504 8-213 (218)
5 4hqo_A Sporozoite surface prot 99.8 8.2E-21 2.8E-25 190.7 15.9 179 324-507 17-210 (266)
6 3zqk_A VON willebrand factor; 99.8 3E-20 1E-24 178.4 18.0 169 321-505 17-195 (199)
7 1mf7_A Integrin alpha M; cell 99.8 9.2E-21 3.1E-25 181.0 11.9 175 324-505 4-191 (194)
8 1shu_X Anthrax toxin receptor 99.8 8E-20 2.7E-24 172.3 18.2 173 324-503 5-181 (182)
9 4hqf_A Thrombospondin-related 99.8 8.1E-20 2.8E-24 184.9 19.0 179 324-506 20-212 (281)
10 2b2x_A Integrin alpha-1; compu 99.8 7.2E-20 2.5E-24 178.8 16.8 174 324-506 21-214 (223)
11 1n3y_A Integrin alpha-X; alpha 99.8 1.5E-20 5.3E-25 179.8 11.3 176 323-505 7-195 (198)
12 1pt6_A Integrin alpha-1; cell 99.8 6.1E-20 2.1E-24 178.0 13.6 174 324-506 6-199 (213)
13 3n2n_F Anthrax toxin receptor 99.8 8.8E-20 3E-24 172.4 14.2 172 323-503 5-184 (185)
14 1atz_A VON willebrand factor; 99.8 4.1E-19 1.4E-23 168.8 18.0 163 324-495 4-176 (189)
15 1v7p_C Integrin alpha-2; snake 99.8 5.3E-19 1.8E-23 169.6 18.3 173 324-505 5-197 (200)
16 1mjn_A Integrin alpha-L; rossm 99.8 3.1E-20 1.1E-24 175.1 6.2 165 325-502 2-178 (179)
17 2xgg_A Microneme protein 2; A/ 99.8 2.6E-18 8.8E-23 161.7 16.5 146 324-474 16-170 (178)
18 2odp_A Complement C2; C3/C5 co 99.8 5.4E-19 1.9E-23 193.9 12.5 178 323-501 7-211 (509)
19 2x31_A Magnesium-chelatase 60 99.8 2.2E-21 7.4E-26 184.5 -5.8 172 323-502 3-185 (189)
20 3hrz_D Complement factor B; se 99.8 2E-18 6.8E-23 198.0 14.9 188 323-511 241-455 (741)
21 1rrk_A Complement factor B; BB 99.8 2.2E-18 7.4E-23 188.4 14.1 179 325-504 1-206 (497)
22 3k6s_A Integrin alpha-X; cell 99.6 1E-16 3.6E-21 188.8 6.6 176 323-505 128-316 (1095)
23 4b4t_W RPN10, 26S proteasome r 99.6 1.6E-14 5.6E-19 142.8 16.2 146 327-481 5-163 (268)
24 2x5n_A SPRPN10, 26S proteasome 99.6 6.2E-14 2.1E-18 133.1 19.3 155 326-490 3-174 (192)
25 2ww8_A RRGA, cell WALL surface 99.5 7.7E-14 2.6E-18 160.0 14.0 114 322-435 221-391 (893)
26 1yvr_A RO autoantigen, 60-kDa 99.3 5.5E-12 1.9E-16 138.7 12.4 134 323-466 366-504 (538)
27 1jey_B KU80; double-strand DNA 99.2 3.7E-11 1.3E-15 132.8 13.8 154 326-488 8-229 (565)
28 2nvo_A RO sixty-related protei 99.1 1.8E-10 6E-15 126.3 10.2 151 323-483 360-534 (535)
29 3rag_A Uncharacterized protein 99.0 3.6E-10 1.2E-14 109.1 5.9 93 323-418 132-227 (242)
30 1jey_A KU70; double-strand DNA 98.9 1.6E-08 5.6E-13 112.4 14.9 136 326-466 35-208 (609)
31 3rag_A Uncharacterized protein 98.2 2.9E-06 9.9E-11 81.8 9.5 78 421-503 8-90 (242)
32 1pcx_A Protein transport prote 98.2 8.8E-05 3E-09 84.8 22.7 232 312-548 174-488 (810)
33 2nut_A Protein transport prote 98.2 8.2E-05 2.8E-09 84.6 22.1 164 323-491 130-383 (769)
34 1m2v_B SEC24, protein transpor 98.0 0.00025 8.4E-09 81.7 21.6 231 312-547 290-603 (926)
35 1m2o_A SEC23, protein transpor 98.0 0.00087 3E-08 76.2 25.8 176 323-504 119-388 (768)
36 3fcs_B Integrin beta-3; beta p 98.0 9.5E-05 3.2E-09 82.6 17.4 189 307-507 98-355 (690)
37 2iue_A Pactolus I-domain; memb 98.0 1.5E-05 5.2E-10 75.7 9.1 105 324-435 2-117 (212)
38 3t3p_B Integrin beta-3; integr 97.7 0.00052 1.8E-08 72.4 16.2 189 307-507 98-355 (472)
39 3eh1_A Protein transport prote 97.7 0.0044 1.5E-07 70.1 24.6 223 321-548 156-453 (751)
40 3efo_B SEC24 related gene fami 97.6 0.0099 3.4E-07 67.4 24.8 225 321-548 173-475 (770)
41 3k6s_B Integrin beta-2; cell r 97.6 0.00028 9.6E-09 78.6 11.6 188 307-507 91-345 (687)
42 3eh2_A Protein transport prote 97.5 0.013 4.5E-07 66.4 24.6 225 321-548 169-471 (766)
43 3vi3_B Integrin beta-1; beta p 97.4 0.0048 1.6E-07 64.6 18.0 187 308-507 110-362 (454)
44 3v4v_B Integrin beta-7; cell a 97.3 0.0042 1.4E-07 65.8 15.9 188 307-507 119-374 (503)
45 4g2a_A Hypothetical protein; t 96.1 0.17 5.7E-06 50.3 16.3 111 78-202 10-150 (322)
46 3isy_A Bsupi, intracellular pr 37.8 1E+02 0.0035 25.8 7.3 91 89-211 7-100 (120)
47 1o98_A 2,3-bisphosphoglycerate 30.9 1.9E+02 0.0065 30.6 9.8 62 406-468 94-156 (511)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.93 E-value=2.6e-24 Score=231.88 Aligned_cols=190 Identities=19% Similarity=0.151 Sum_probs=166.7
Q ss_pred ccCceEEEEEeCCcCCC--cchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecc---cccCCHHHHHHHHHHHhcC
Q 007752 323 VFRKDVVFLVDVSGSMQ--GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS---MKLASQGTIINATQWLSSL 397 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~--g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~---~~~~~~~~~~~a~~~i~~l 397 (591)
..+.+++||||+||||. +.+++.+|+++..+++.|+++++|+|+.|++.+..+.+. +.+.+..+...+.++|+.+
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~L 154 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGRL 154 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHTC
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHcC
Confidence 46799999999999999 999999999999999999999999999999999887664 4556788999999999999
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007752 398 VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (591)
Q Consensus 398 ~a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA 476 (591)
.++|||+++.||..|++.+...++..+.|||||||.+++.. .......+.. ..+++||+||+|.+.|..+|+.||
T Consensus 155 ~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~----~~~i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 155 HANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSS----IGNFTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp CCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHH----TTTCEEEEEEESSSSCHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCccCHHHHHHHH
Confidence 99999999999999999998766677899999999987532 1222222221 245999999999999999999999
Q ss_pred HhCCCEEEEcCCCCchHHHHHHHHHHhccceEeeEEEEec
Q 007752 477 QIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETS 516 (591)
Q Consensus 477 ~~~~G~~~~v~~~~~l~~~l~~~l~~~~~p~~~~i~l~~~ 516 (591)
+.++|.|+++.+.+++...|.+++..+.++.++|+.+.+.
T Consensus 231 ~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~ 270 (464)
T 4fx5_A 231 DALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLW 270 (464)
T ss_dssp HHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred HhCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEE
Confidence 9999999999999999999999999999999999998875
No 2
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.88 E-value=2.9e-21 Score=185.89 Aligned_cols=175 Identities=11% Similarity=0.117 Sum_probs=137.6
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCC
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~ 400 (591)
.+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++.++...+.....+.+. +.+.|+++...
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~---~~~~i~~l~~~ 88 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSE---LRRIASQVKYA 88 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHH---HHHHHHTCCCC
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHHH---HHHHHHhCcCC
Confidence 47999999999999999999999999999999997 5789999999999887655433334444 45557777765
Q ss_pred -C-CCchHHHHHHHHHHh-hc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007752 401 -G-GTNILLPLKQAIKLL-SD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 401 -G-gT~l~~aL~~a~~~l-~~--~~~~~~~IillTDG~~~~~--~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~ 473 (591)
| +|+++.||+.|.+.+ .. +++..+.+||+|||..++. ..+.+.++.... .+++||+||+|.+.|...|+
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~----~gi~i~~igvG~~~~~~~L~ 164 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKK----KKVIVIPVGIGPHANLKQIR 164 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHH----TTEEEEEEEESTTSCHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHH----CCCEEEEEecCCcCCHHHHH
Confidence 3 499999999998654 32 2345679999999998753 234444333322 35999999999999999999
Q ss_pred HHHHhC-CCEEEEcCCCCchHHHHHHHHHHhcc
Q 007752 474 ILAQIG-RGYYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 474 ~LA~~~-~G~~~~v~~~~~l~~~l~~~l~~~~~ 505 (591)
.||+.+ +|.++.+.+.+++...+.++.+.++.
T Consensus 165 ~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC~ 197 (202)
T 1ijb_A 165 LIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD 197 (202)
T ss_dssp HHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred HHhCCCCcccEEEeCCHHHHHHHHHHHHHHhhc
Confidence 999974 67888899999999998888888764
No 3
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.87 E-value=1.6e-21 Score=190.08 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=128.1
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a 399 (591)
..+.+++||||+||||.+.+++.+|+++..+++.| +++++|+|+.|++.+....+...+. ..+...+.+.|+++.+
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~ 91 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEAD-SSNADWVTKQLNEINY 91 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGG-GGCHHHHHHHHHTCCT
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCC-CCCHHHHHHHHHhccc
Confidence 35789999999999999999999999999998765 4578999999999988765432222 2233445555666664
Q ss_pred -----CCCCchHHHHHHHHHHhhcCC--------CCccEEEEEecCCCC---ChhhHHHHHHHHH------hcCCCCCCe
Q 007752 400 -----GGGTNILLPLKQAIKLLSDTS--------ESIPLIFLITDGTVG---DERGICNEIKSYL------TNTRSISPR 457 (591)
Q Consensus 400 -----~GgT~l~~aL~~a~~~l~~~~--------~~~~~IillTDG~~~---~~~~~~~~v~~~~------~~~~~~~~~ 457 (591)
+|+|++..||+.|.+.+.... +..+.|||+|||.++ +.....+.+++.. ......+++
T Consensus 92 ~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 171 (223)
T 1q0p_A 92 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD 171 (223)
T ss_dssp TSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEE
T ss_pred ccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcE
Confidence 699999999999999987432 355689999999987 4444455555442 233445689
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--EEEEcCCCCchHHHHHHHHHHh
Q 007752 458 ICTFGVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 458 I~tiGiG~~~~~~lL~~LA~~~~G--~~~~v~~~~~l~~~l~~~l~~~ 503 (591)
||+||+|.+.+...|+.||..++| .|+.+.+.++|...+.+++++.
T Consensus 172 i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~~s 219 (223)
T 1q0p_A 172 VYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES 219 (223)
T ss_dssp EEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC---------------
T ss_pred EEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999 8999999999988888777653
No 4
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=8.5e-21 Score=184.40 Aligned_cols=175 Identities=22% Similarity=0.276 Sum_probs=136.2
Q ss_pred CccCceEEEEEeCCcCCCcc-----hHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhc
Q 007752 322 KVFRKDVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 322 ~~~p~~vvfviD~SgSM~g~-----~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
+..+.+++||||+||||.+. +++.+|+++..+++.++ +++|+|+.|++++..+.+.. .+.+.+..+++.+..
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~--~~~~~~~~~l~~l~~ 84 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPIT--SDYISAKMFLESISP 84 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEE--SCHHHHHHHHHTCCG
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCC--CCHHHHHHHHHhcCc
Confidence 45689999999999999975 89999999999999986 89999999999988766532 345555555443331
Q ss_pred -CCCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCC----------
Q 007752 397 -LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGL---------- 465 (591)
Q Consensus 397 -l~a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~---------- 465 (591)
...+|+|++..||..|.+.+...+...+.|||+|||..+.. ...+.++.. . ..+++||+||+|.
T Consensus 85 ~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-~~~~~~~~~-~---~~~i~v~~igig~~~~~~~~~~g 159 (218)
T 3ibs_A 85 SLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-GAVEAAKAA-A---EKGIQVSVLGVGMPEGAPIPVEG 159 (218)
T ss_dssp GGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-CHHHHHHHH-H---TTTEEEEEEEESCTTCEECBCTT
T ss_pred ccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-cHHHHHHHH-H---hcCCEEEEEEecCCCCCcccccC
Confidence 22369999999999999998766567789999999998765 333333333 2 3469999999997
Q ss_pred ---------------CCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007752 466 ---------------YCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 466 ---------------~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~ 504 (591)
..|..+|+.||+.++|.|+++.+..+....+.+.+.++.
T Consensus 160 ~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l~ 213 (218)
T 3ibs_A 160 TNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMA 213 (218)
T ss_dssp SSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred CCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHhh
Confidence 678999999999999999999986666666666666554
No 5
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.85 E-value=8.2e-21 Score=190.69 Aligned_cols=179 Identities=20% Similarity=0.192 Sum_probs=139.4
Q ss_pred cCceEEEEEeCCcCCCcchH-HHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcC--
Q 007752 324 FRKDVVFLVDVSGSMQGVLL-EQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSL-- 397 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i-~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l-- 397 (591)
.+.|++||||.||||.+..+ +.+|+++..+++.|. ++++|+|+.|++.+..+.+... ....+...+.+.|+.+
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~-~~~~~~~~~~~~i~~l~~ 95 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGS-GQSIDKRQALSKVTELRK 95 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTS-HHHHCHHHHHHHHHHHHH
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCC-CCccCHHHHHHHHHHhhh
Confidence 46899999999999998888 589999999999997 6899999999999987665322 2112345555556655
Q ss_pred --CCCCCCchHHHHHHHHHHhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 007752 398 --VAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (591)
Q Consensus 398 --~a~GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL 472 (591)
.++|+|++..||+.|.+++... ++..+.|||||||.+++...+.+.++.... .+++||+||||.+.+..+|
T Consensus 96 ~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~----~gi~i~~iGiG~~~~~~~L 171 (266)
T 4hqo_A 96 TYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQ----RNVRLAVIGIGQGINHQFN 171 (266)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHH----TTCEEEEEECSSSCCHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHH----CCCEEEEEecCcccCHHHH
Confidence 6789999999999999888753 345679999999999876666555554433 3599999999999999999
Q ss_pred HHHHHhC--C--CEEEEcCCCCchHHHHHHHHHHhccce
Q 007752 473 QILAQIG--R--GYYDSAYDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 473 ~~LA~~~--~--G~~~~v~~~~~l~~~l~~~l~~~~~p~ 507 (591)
+.||..+ + +.++++.+.++|...+..++++++...
T Consensus 172 ~~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~~iC~~~ 210 (266)
T 4hqo_A 172 RLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEV 210 (266)
T ss_dssp HHHHTCCTTCSSCTTEECSCHHHHHHHHHHHHCCCEEEE
T ss_pred HHhhCCCCCCCCCCeEEecCHHHHHHHHHHHHhhhcccc
Confidence 9999874 2 377778887777766666666655443
No 6
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.84 E-value=3e-20 Score=178.37 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=133.4
Q ss_pred CCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcC
Q 007752 321 RKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSL 397 (591)
Q Consensus 321 ~~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l 397 (591)
....+.|++||||.||||.+.+++.+|+++..+++.| ++++||+|+.|+++++...+.....+.+. +.+.|+++
T Consensus 17 ~~~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~---~~~~i~~l 93 (199)
T 3zqk_A 17 RNSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGD---ILQRLREI 93 (199)
T ss_dssp --CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHHH---HHHHHHHC
T ss_pred CCCCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHHH---HHHHHHhC
Confidence 3457899999999999999999999999999999999 47899999999999988766543344444 45556666
Q ss_pred CCC-C-CCchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHH
Q 007752 398 VAG-G-GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHY 470 (591)
Q Consensus 398 ~a~-G-gT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~ 470 (591)
... | +|+++.||+.|.+.+.. +++..+.+||+|||...+.-. + ...+++||+||+|.+.|..
T Consensus 94 ~~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~------~-----~~~~v~v~~iGiG~~~~~~ 162 (199)
T 3zqk_A 94 RYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK------R-----LPGDIQVVPIGVGPNANVQ 162 (199)
T ss_dssp CCCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC------C-----CCTTEEEEEEEESTTCCHH
T ss_pred cCCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH------H-----HhCCCEEEEEEcCCCCCHH
Confidence 665 4 59999999999885421 134457999999999765321 0 1246999999999999999
Q ss_pred HHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhcc
Q 007752 471 FLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 471 lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~~ 505 (591)
.|+.||. +++ ++++.+.++|...+.+++.+++.
T Consensus 163 ~L~~iA~-~~~-~~~~~~~~~L~~~~~~l~~~~c~ 195 (199)
T 3zqk_A 163 ELERIGW-PNA-PILIQDFETLPREAPDLVLQRCC 195 (199)
T ss_dssp HHHHHHT-TSC-CEEESCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCc-eEEeCCHHHHHHHHHHHHHhhcc
Confidence 9999998 444 45889999999999999988764
No 7
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.83 E-value=9.2e-21 Score=180.96 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=136.6
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC-CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC-CC
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GG 401 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a-~G 401 (591)
.+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++.++...+... ..+...+.+.|+++.. +|
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~~g 80 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKE---FQNNPNPRSLVKPITQLLG 80 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHH---HHHSCCHHHHHTTCCCCCS
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCC---cCCHHHHHHHHHhCcCCCC
Confidence 47899999999999999899999999999999996 5789999999999887654321 1233455666888875 79
Q ss_pred CCchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHH
Q 007752 402 GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYF 471 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~-~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~----~~l 471 (591)
+|++..||+.|.+.+.. +++..+.|||+|||.++ +.....+.++.. + ..+++||+||+|...+ ...
T Consensus 81 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~-~---~~gi~v~~igvG~~~~~~~~~~~ 156 (194)
T 1mf7_A 81 RTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEA-D---REGVIRYVIGVGDAFRSEKSRQE 156 (194)
T ss_dssp CBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHH-H---HTTEEEEEEEESGGGCSHHHHHH
T ss_pred CchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHH-H---HCCCEEEEEEecccccccccHHH
Confidence 99999999999975432 13346789999999987 443222222222 2 1359999999999876 789
Q ss_pred HHHHHHhC-CCEEEEcCCCCchHHHHHHHHHHhcc
Q 007752 472 LQILAQIG-RGYYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 472 L~~LA~~~-~G~~~~v~~~~~l~~~l~~~l~~~~~ 505 (591)
|+.||..+ +|.++.+.+.+++...+.++.++++.
T Consensus 157 L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~~ic~ 191 (194)
T 1mf7_A 157 LNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC 191 (194)
T ss_dssp HHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred HHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHHhh
Confidence 99999986 58888899999999988888888764
No 8
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.83 E-value=8e-20 Score=172.26 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=131.4
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-CCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCCC
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~Gg 402 (591)
.+.+++||||.||||.+..+. .+++++.++.. +.++++++|+.|++.+....+.. .+...+..+++.+..+.++|+
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~g~ 81 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT--GDRGKISKGLEDLKRVSPVGE 81 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHHTCCCCSC
T ss_pred CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC--CCHHHHHHHHHhcccCCCCCC
Confidence 578999999999999986553 34444444444 45789999999999988766533 567788888888887788999
Q ss_pred CchHHHHHHHHHHhhcC--CCCccEEEEEecCCCCChhh-HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007752 403 TNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERG-ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~-~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~ 479 (591)
|++..||+.|.+.+... ++..+.|||+|||.+++... ......+.+. ..+++||+||+| +.+...|+.||..+
T Consensus 82 T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~~i~i~~igvg-~~~~~~L~~ia~~~ 157 (182)
T 1shu_X 82 TYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISR---SLGASVYCVGVL-DFEQAQLERIADSK 157 (182)
T ss_dssp CCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHH---HTTCEEEEEECS-SCCHHHHHHHSSSG
T ss_pred chHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHH---hCCCEEEEEeCC-cCCHHHHHHHhCCC
Confidence 99999999999998654 34567999999999875431 1122222222 235999999999 56899999999999
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHh
Q 007752 480 RGYYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 480 ~G~~~~v~~~~~l~~~l~~~l~~~ 503 (591)
+|.|+...+.+++...+.++.+++
T Consensus 158 ~~~~~~~~~~~~L~~~~~~i~~~i 181 (182)
T 1shu_X 158 EQVFPVKGGFQALKGIINSILAQS 181 (182)
T ss_dssp GGEEESSSTTHHHHHHHHHHHHTB
T ss_pred CceEEccCCHHHHHHHHHHHHhcc
Confidence 888776657788887777776654
No 9
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.83 E-value=8.1e-20 Score=184.94 Aligned_cols=179 Identities=19% Similarity=0.162 Sum_probs=142.5
Q ss_pred cCceEEEEEeCCcCCCcchH-HHHHHHHHHHHHhCCC---CCeEEEEEeCCCceeeeccccc--CCHHHHHHHHHHHh-c
Q 007752 324 FRKDVVFLVDVSGSMQGVLL-EQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKL--ASQGTIINATQWLS-S 396 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i-~~ak~al~~~l~~L~~---~d~~~Iv~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~-~ 396 (591)
.+.|++||||.||||.+..+ +.+|+++..+++.|.. +++|+|+.|++++....+.... .+.+.+..+++.+. .
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~ 99 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLST 99 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHT
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhc
Confidence 58999999999999998777 8999999999999976 7899999999999776553322 23555666655554 2
Q ss_pred CCCCCCCchHHHHHHHHHHhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007752 397 LVAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 397 l~a~GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~ 473 (591)
...+|+|+++.||+.|.+.+... ++..+.|||||||.+++.....+.++.... .+++||+||+|.+.+..+|+
T Consensus 100 ~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~----~gv~i~~igiG~~~~~~~L~ 175 (281)
T 4hqf_A 100 NLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSD----RGVKIAVFGIGQGINVAFNR 175 (281)
T ss_dssp TGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHH----TTCEEEEEEESSSCCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHH----CCCEEEEEeCCCccCHHHHH
Confidence 34579999999999998887653 235678999999999876555555554432 35999999999999999999
Q ss_pred HHHHhC--CC--EEEEcCCCCchHHHHHHHHHHhccc
Q 007752 474 ILAQIG--RG--YYDSAYDPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 474 ~LA~~~--~G--~~~~v~~~~~l~~~l~~~l~~~~~p 506 (591)
.||... +| .++.+.+.+++...+..+..+++..
T Consensus 176 ~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~~iC~~ 212 (281)
T 4hqf_A 176 FLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVE 212 (281)
T ss_dssp HHTTSCSSSSCCTTEEEECGGGHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCCCCCceEEecchhhhhcccCCcccccCCC
Confidence 999873 44 7788899999999888888887765
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.83 E-value=7.2e-20 Score=178.82 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=136.0
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCC
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~ 400 (591)
.+.+++||||.||||. .++.+|+++..+++.|. ++++|+|+.|+++++...+... ..+...+.+.|+.+.+.
T Consensus 21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~ 95 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNK---YSSTEEVLVAANKIVQR 95 (223)
T ss_dssp -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTT---CCSHHHHHHHHTTCCCC
T ss_pred CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCC---CCCHHHHHHHHHhhhcc
Confidence 4789999999999998 48999999999999885 6899999999999887665422 23445566668877765
Q ss_pred C--CCchHHHHHHHHHH-hh----cCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-----
Q 007752 401 G--GTNILLPLKQAIKL-LS----DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----- 468 (591)
Q Consensus 401 G--gT~l~~aL~~a~~~-l~----~~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~----- 468 (591)
| +|++..||+.|.+. +. ..++..+.|||+|||..++.....+.++.. + ..+++||+||+|...|
T Consensus 96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~-~---~~gi~v~~igvG~~~~~~~~~ 171 (223)
T 2b2x_A 96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDC-E---DENIQRFSIAILGHYNRGNLS 171 (223)
T ss_dssp CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHH-H---TTTEEEEEEEECGGGC---CC
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHH-H---HCCCEEEEEEecCcccccccc
Confidence 4 49999999999987 33 124556799999999998765444443333 2 3469999999998766
Q ss_pred ----HHHHHHHHHh-CCCEEEEcCCCCchHHHHHHHHHHhccc
Q 007752 469 ----HYFLQILAQI-GRGYYDSAYDPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 469 ----~~lL~~LA~~-~~G~~~~v~~~~~l~~~l~~~l~~~~~p 506 (591)
...|+.||.. ++|.|+.+.+.+++...+..+.++++..
T Consensus 172 ~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~~~ic~~ 214 (223)
T 2b2x_A 172 TEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFAL 214 (223)
T ss_dssp CHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC--
T ss_pred chhHHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhcCc
Confidence 4789999998 8899999999999998888887777643
No 11
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.83 E-value=1.5e-20 Score=179.77 Aligned_cols=176 Identities=19% Similarity=0.180 Sum_probs=136.8
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC-CC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AG 400 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-a~ 400 (591)
..+.+++||||.||||.+..++.+++++..+++.| +++++|+|+.|++.+....+.. +..+...+.+.|+.+. .+
T Consensus 7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~---~~~~~~~~~~~i~~l~~~~ 83 (198)
T 1n3y_A 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE---EFRRSSNPLSLLASVHQLQ 83 (198)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH---HHHHCSSGGGGGTTCCCCC
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC---ccCCHHHHHHHHhcCcCCC
Confidence 35789999999999999988999999999999999 6899999999999987654421 1223344556677766 56
Q ss_pred CCCchHHHHHHHHHHh-hc----CCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC----CHH
Q 007752 401 GGTNILLPLKQAIKLL-SD----TSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYC----NHY 470 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l-~~----~~~~~~~IillTDG~~~-~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~----~~~ 470 (591)
|+|++..||+.|.+.+ .. +++..+.|||+|||.++ +.....+.++.. . ..+++||+||+|... +..
T Consensus 84 g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~-~---~~gi~i~~igvG~~~~~~~~~~ 159 (198)
T 1n3y_A 84 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMA-D---AAGIIRYAIGVGLAFQNRNSWK 159 (198)
T ss_dssp SCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHH-H---HTTCEEEEEEESGGGGSSTTHH
T ss_pred CCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHH-H---HCCCEEEEEEccccccccccHH
Confidence 9999999999999544 32 13456799999999987 433333333333 2 235999999999877 689
Q ss_pred HHHHHHHhCCCEE-EEcCCCCchHHHHHHHHHHhcc
Q 007752 471 FLQILAQIGRGYY-DSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 471 lL~~LA~~~~G~~-~~v~~~~~l~~~l~~~l~~~~~ 505 (591)
.|+.||..++|.| +.+.+.+++...+.++.++++.
T Consensus 160 ~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic~ 195 (198)
T 1n3y_A 160 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195 (198)
T ss_dssp HHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT
T ss_pred HHHHHHcCCCcccEEEeCCHHHHHHHHHHHHhheec
Confidence 9999999999986 7788889999988888888764
No 12
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.82 E-value=6.1e-20 Score=177.99 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=135.4
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCC
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~ 400 (591)
.+.+++||||.||||. .++.+|+++..+++.|. ++++|+|+.|++.+....+... ..+...+.+.|+.+.+.
T Consensus 6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~ 80 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNK---YSSTEEVLVAAKKIVQR 80 (213)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTT---CSSHHHHHHHHHTCCCC
T ss_pred CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccc---cCCHHHHHHHHHhccCC
Confidence 4789999999999998 58999999999999885 6899999999999887665422 23445556667777765
Q ss_pred -C-CCchHHHHHHHHHHh-h----cCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-----
Q 007752 401 -G-GTNILLPLKQAIKLL-S----DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----- 468 (591)
Q Consensus 401 -G-gT~l~~aL~~a~~~l-~----~~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~----- 468 (591)
| +|++..||+.|.+.+ . .+++..+.|||+|||.+++.....+.++.. ++ .+++||+||+|...|
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~-~~---~gi~i~~igig~~~~~~~~~ 156 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDC-ED---ENIQRFSIAILGSYNRGNLS 156 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHH-HH---TTEEEEEEEECHHHHHTTCC
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHH-HH---CCCEEEEEEecccccccccc
Confidence 4 599999999999874 3 224567799999999998765443333333 22 359999999997644
Q ss_pred ----HHHHHHHHHh-CCCEEEEcCCCCchHHHHHHHHHHhccc
Q 007752 469 ----HYFLQILAQI-GRGYYDSAYDPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 469 ----~~lL~~LA~~-~~G~~~~v~~~~~l~~~l~~~l~~~~~p 506 (591)
...|+.||.. ++|.|+.+.+.+++...+..+.++++..
T Consensus 157 ~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~~~ 199 (213)
T 1pt6_A 157 TEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFAL 199 (213)
T ss_dssp CHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC-
T ss_pred chhhHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhheec
Confidence 4789999998 6899999999999998888888888754
No 13
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.82 E-value=8.8e-20 Score=172.44 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=132.2
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCCC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGG 401 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~G 401 (591)
..+.|++||||.||||.+ .+...++++..++..+ .++++|+|+.|++.++...+.. .+.+.+..+++.+..+.++|
T Consensus 5 ~~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~--~~~~~~~~~i~~l~~~~~~g 81 (185)
T 3n2n_F 5 YGGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLT--EDREQIRQGLEELQKVLPGG 81 (185)
T ss_dssp BSEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHHTCCCCS
T ss_pred CCCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccC--CCHHHHHHHHHHHhhhcCCC
Confidence 457899999999999987 5777788887777664 5689999999999998776543 37788888888888777889
Q ss_pred CCchHHHHHHHHHHhhc----CCCCccEEEEEecCCCCChhh--HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007752 402 GTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDERG--ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL 475 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~~~--~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~L 475 (591)
+|+++.||+.|.+.+.. .....+.|||+|||.+++... ....++.. . ..+++||+||+| +.+...|+.|
T Consensus 82 ~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~-~---~~gi~i~~igvg-~~~~~~L~~i 156 (185)
T 3n2n_F 82 DTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRS-R---DLGAIVYAVGVK-DFNETQLARI 156 (185)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHH-H---HTTEEEEEEECS-SCCHHHHTTT
T ss_pred CccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHH-H---HCCCEEEEEEec-cCCHHHHHHH
Confidence 99999999999997732 123557999999999875431 12222222 2 235999999999 7799999999
Q ss_pred HHhCCCEEEEcCC-CCchHHHHHHHHHHh
Q 007752 476 AQIGRGYYDSAYD-PGSVDYRIRRFFTAA 503 (591)
Q Consensus 476 A~~~~G~~~~v~~-~~~l~~~l~~~l~~~ 503 (591)
|..+ |.++.+.+ .++|...+.++.+++
T Consensus 157 A~~~-~~~~~~~~~~~~L~~~~~~i~~~i 184 (185)
T 3n2n_F 157 ADSK-DHVFPVNDGFQALQGIIHSILKKS 184 (185)
T ss_dssp SSSG-GGEEEHHHHHHHHHHHHHHHHHTB
T ss_pred hCCC-CCeEEeccHHHHHHHHHHHHHHhc
Confidence 9764 66666776 777877777776654
No 14
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.81 E-value=4.1e-19 Score=168.81 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=125.3
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC---CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC-
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA- 399 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a- 399 (591)
.+.+++||||.||||.+.+++.+|+++..+++.+.. +++++|+.|++.++...+.....+.+.+. +.|+.+..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~---~~i~~l~~~ 80 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLL---SLVDVMQRE 80 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHH---HHHHTCCCC
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHHH---HHHHhCcCC
Confidence 478999999999999999999999999999999863 47999999999988766543334444444 44666665
Q ss_pred CCCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007752 400 GGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~ 474 (591)
+|+|++..||+.|.+.+... ++..+.+|++|||..++. ..+.++.. .+ .+++||+||+|...|...|+.
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~--~~~~~~~~-~~---~gi~v~~igvG~~~~~~~L~~ 154 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS--VDAAADAA-RS---NRVTVFPIGIGDRYDAAQLRI 154 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC--CHHHHHHH-HH---TTEEEEEEEESSSSCHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch--HHHHHHHH-HH---CCCEEEEEEcCCcCCHHHHHH
Confidence 69999999999999987642 233456888999987543 22222222 22 359999999999999999999
Q ss_pred HHHhCCC-EEEEcCCCCchHHH
Q 007752 475 LAQIGRG-YYDSAYDPGSVDYR 495 (591)
Q Consensus 475 LA~~~~G-~~~~v~~~~~l~~~ 495 (591)
||..+++ .++.+.+.+++...
T Consensus 155 iA~~~~~~~~~~~~~~~~~~~l 176 (189)
T 1atz_A 155 LAGPAGDSNVVKLQRIEDLPTM 176 (189)
T ss_dssp HTGGGGGGGCEEESSTTHHHHH
T ss_pred HHCCCcccCEEEecChhhHHHH
Confidence 9999875 45667777777654
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.81 E-value=5.3e-19 Score=169.60 Aligned_cols=173 Identities=17% Similarity=0.089 Sum_probs=133.8
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCCC
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~ 400 (591)
.+.+++||||.||||. .++.+|+++..+++.+. ++++++|+.|+++++...+.... .+...+.+.|+.+.+.
T Consensus 5 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~---~~~~~~~~~i~~l~~~ 79 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTY---KTKEEMIVATSQTSQY 79 (200)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTC---SSHHHHHHHHHHCCCC
T ss_pred CcccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCc---CCHHHHHHHHHhhhcc
Confidence 3689999999999998 48999999999999986 58999999999999876654322 2445566667777765
Q ss_pred -C-CCchHHHHHHHHHH-hhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcC-----CCCC
Q 007752 401 -G-GTNILLPLKQAIKL-LSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVG-----LYCN 468 (591)
Q Consensus 401 -G-gT~l~~aL~~a~~~-l~~----~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG-----~~~~ 468 (591)
| +|++..||+.|.+. +.. +++..+.|||+|||..++.....+.++.. ++ .+++||+||+| .+.+
T Consensus 80 ~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~-~~---~gi~i~~igvg~~~~~~~~~ 155 (200)
T 1v7p_C 80 GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQC-NH---DNILRFGIAVLGYLNRNALD 155 (200)
T ss_dssp CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHH-HH---TTEEEEEEEECHHHHHTTCC
T ss_pred CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHH-HH---CCCEEEEEEecccccccccc
Confidence 4 69999999999996 432 23456789999999998765444333333 22 35999999994 4455
Q ss_pred ----HHHHHHHHHhCCCEE-EEcCCCCchHHHHHHHHHHhcc
Q 007752 469 ----HYFLQILAQIGRGYY-DSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 469 ----~~lL~~LA~~~~G~~-~~v~~~~~l~~~l~~~l~~~~~ 505 (591)
...|+.||..++|.| +.+.+.+++...+..+.++++.
T Consensus 156 ~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i~~~ic~ 197 (200)
T 1v7p_C 156 TKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFS 197 (200)
T ss_dssp CHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhCCccHhcEEEcCCHHHHHHHHHHHHhhhcC
Confidence 567999999998865 6788999999999888888764
No 16
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.80 E-value=3.1e-20 Score=175.14 Aligned_cols=165 Identities=15% Similarity=0.089 Sum_probs=124.7
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCC-CCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC-CCC
Q 007752 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GGG 402 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a-~Gg 402 (591)
|.+++||||.||||.+.+++.+|+++..+++.|.+ +++|+|+.|++.++...+.....+.+++..+ ++.+.. +|+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~---~~~i~~~~g~ 78 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDAL---LKHVKHMLLL 78 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHH---HTTCCCCCBC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHHHHHH---HHhcccCCCC
Confidence 57999999999999999999999999999999965 5699999999998876543221112234445 444443 499
Q ss_pred CchHHHHHHHHH-Hhhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHHHH
Q 007752 403 TNILLPLKQAIK-LLSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYFLQ 473 (591)
Q Consensus 403 T~l~~aL~~a~~-~l~~----~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~----~~lL~ 473 (591)
|+++.||+.|.+ ++.. +++..+.+||+|||..++..... . ..+++||+||+|...+ ...|+
T Consensus 79 T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~~-------~---~~~i~i~~igvG~~~~~~~~~~~L~ 148 (179)
T 1mjn_A 79 TNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNID-------A---AKDIIRYIIGIGKHFQTKESQETLH 148 (179)
T ss_dssp CCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCG-------G---GTTSEEEEEEESGGGCSHHHHHTTG
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcchH-------H---HCCCEEEEEEccccccccccHHHHH
Confidence 999999999996 4432 13456799999999987653321 1 2369999999998877 37899
Q ss_pred HHHHhCCCE-EEEcCCCCchHHHHHHHHHH
Q 007752 474 ILAQIGRGY-YDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 474 ~LA~~~~G~-~~~v~~~~~l~~~l~~~l~~ 502 (591)
.||..++|. ++.+.+.+++...+.++.++
T Consensus 149 ~iA~~~~~~~~~~~~~~~~L~~i~~~i~~~ 178 (179)
T 1mjn_A 149 KFASKPASEFVKILDTFEKLKDLCTELQKK 178 (179)
T ss_dssp GGSCSCHHHHEEEESSGGGSCCHHHHHHHH
T ss_pred HHhCCccHhcEEEeCCHHHHHHHHHHHHhh
Confidence 999988774 57788888888777766554
No 17
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.78 E-value=2.6e-18 Score=161.75 Aligned_cols=146 Identities=19% Similarity=0.191 Sum_probs=104.3
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC-C
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-A 399 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-a 399 (591)
.+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++++....+..... ..+...+.+.|+.+. .
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~-~~~~~~~~~~i~~l~~~ 94 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPN-AVDKQLAAHAVLDMPYK 94 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGG-GSCHHHHHHHHHHCCCC
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCC-ccCHHHHHHHHHhCCCC
Confidence 37999999999999999999999999999999986 358999999999988765543222 114455556677776 5
Q ss_pred CCCCchHHHHHHHHHHhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007752 400 GGGTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~ 474 (591)
+|+|++..||+.|.+.+.. +++..+.|||+|||.+++.....+.++.. ++ .+++||+||+|..+|..+|+.
T Consensus 95 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l-~~---~gi~v~~igvG~~~~~~~l~~ 170 (178)
T 2xgg_A 95 KGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEI-RE---LGGIVTVLAVGHYVAAALVPR 170 (178)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHH-HH---TTCEEEEEECC----------
T ss_pred CCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHH-HH---CCCEEEEEEcCCcCCHHHHhc
Confidence 6999999999999997532 13456799999999988654343333333 22 359999999999999988774
No 18
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.78 E-value=5.4e-19 Score=193.89 Aligned_cols=178 Identities=19% Similarity=0.193 Sum_probs=138.2
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a 399 (591)
..+.|++||||.||||.+.+++.+|+++..+++.| +++++|+|+.|+++++...+... ....+.+.+.+.|+++.+
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~-~~~~~~~~~~~~l~~l~~ 85 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLN-DNSRDMTEVISSLENANY 85 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTS-GGGGCHHHHHHHHHTCCG
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccC-CCCCCHHHHHHHHHhccc
Confidence 35789999999999999999999999999999988 78999999999999987665432 222345566666777776
Q ss_pred C-----CCCchHHHHHHHHHHhhcCC-----------CCccEEEEEecCCCCCh---hhHHHHHHHHHhc--CCCCCCeE
Q 007752 400 G-----GGTNILLPLKQAIKLLSDTS-----------ESIPLIFLITDGTVGDE---RGICNEIKSYLTN--TRSISPRI 458 (591)
Q Consensus 400 ~-----GgT~l~~aL~~a~~~l~~~~-----------~~~~~IillTDG~~~~~---~~~~~~v~~~~~~--~~~~~~~I 458 (591)
. |||++..||+.|.+++.... +..+.|||+|||..++. ....+.+++.+.. ....+++|
T Consensus 86 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 165 (509)
T 2odp_A 86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDI 165 (509)
T ss_dssp GGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEE
T ss_pred ccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEE
Confidence 5 99999999999999884311 24468999999998753 3344444443321 11346899
Q ss_pred EEEEcCCC-CCHHHHHHHHHhCCCE--EEEcCCCCchHHHHHHHHH
Q 007752 459 CTFGVGLY-CNHYFLQILAQIGRGY--YDSAYDPGSVDYRIRRFFT 501 (591)
Q Consensus 459 ~tiGiG~~-~~~~lL~~LA~~~~G~--~~~v~~~~~l~~~l~~~l~ 501 (591)
|+||+|.+ .+...|+.||..++|. ++.+.+.+++...+.++++
T Consensus 166 ~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~~ 211 (509)
T 2odp_A 166 YAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD 211 (509)
T ss_dssp EEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEE
T ss_pred EEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhhc
Confidence 99999998 9999999999999998 8888888877776666543
No 19
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.78 E-value=2.2e-21 Score=184.45 Aligned_cols=172 Identities=19% Similarity=0.229 Sum_probs=126.3
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC-CCCCeEEEEEeCC-CceeeecccccCCHHHHHHHHHHHhcCCCC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~~~Iv~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~ 400 (591)
..+.+++||||+||||.+.+++.+|+++..++..+ .++++++|+.|++ ......+.. .+...+.++|+.+.++
T Consensus 3 ~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~ 77 (189)
T 2x31_A 3 MSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPS-----RSLTQTKRQLQGLPGG 77 (189)
T ss_dssp SSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTC-----SCHHHHHHHHHHCCCC
T ss_pred CCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCC-----CCHHHHHHHHhcCCCC
Confidence 46899999999999999999999999999999888 8899999999997 455443321 1455667778889999
Q ss_pred CCCchHHHHHHHHHHhhcCC--CCccEEEEEecCCCCChhhH-------HHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007752 401 GGTNILLPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGI-------CNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~~--~~~~~IillTDG~~~~~~~~-------~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~l 471 (591)
|+|++..||..|++.+.... +..+.|||+|||.+++.... .+.+.+.+......++++|+||+|.. +..+
T Consensus 78 g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~-~~~~ 156 (189)
T 2x31_A 78 GGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMR-PNPA 156 (189)
T ss_dssp BCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHS-SCSS
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCC-CHHH
Confidence 99999999999999987642 34679999999998753210 00011111112234588999999987 6778
Q ss_pred HHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007752 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~ 502 (591)
|+.||+.++|.|+++.+. -...+.++++.
T Consensus 157 L~~iA~~~~G~~~~~~~~--~~~~~~~~~~~ 185 (189)
T 2x31_A 157 LVDLARTMDAHYIALPRA--TAHKMADVLGA 185 (189)
T ss_dssp SCSTTTEEEESSTTTHHH--HHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEECCCc--chHHHHHHHHH
Confidence 999999999998877432 23445555544
No 20
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.76 E-value=2e-18 Score=198.00 Aligned_cols=188 Identities=19% Similarity=0.236 Sum_probs=146.6
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC-
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV- 398 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~- 398 (591)
..+.|++||||.||||.+.+++.+|+++..+++.|. .++||+||.|++++....+... .+..+...+++.|+++.
T Consensus 241 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~-~~~~~~~~~~~~i~~l~~ 319 (741)
T 3hrz_D 241 SGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSE-ADSSNADWVTKQLNEINY 319 (741)
T ss_dssp TCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTS-GGGGCHHHHHHHHTTCCG
T ss_pred CCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecc-cCCcCHHHHHHHHHhccc
Confidence 357899999999999999999999999999998875 4689999999999887665432 33345566777788887
Q ss_pred ----CCCCCchHHHHHHHHHHhhcC--------CCCccEEEEEecCCCCCh---hhHHHHHHHHH------hcCCCCCCe
Q 007752 399 ----AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDE---RGICNEIKSYL------TNTRSISPR 457 (591)
Q Consensus 399 ----a~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~---~~~~~~v~~~~------~~~~~~~~~ 457 (591)
.+|+|++..||+.|++.+... .+..+.|||||||..+.. ....+.+++.. +.....+++
T Consensus 320 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~ 399 (741)
T 3hrz_D 320 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD 399 (741)
T ss_dssp GGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEE
T ss_pred ccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCee
Confidence 789999999999999998321 123468999999988733 33333333321 123345689
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCE--EEEcCCCCchHHHHHHHHHHhccceEeeE
Q 007752 458 ICTFGVGLYCNHYFLQILAQIGRGY--YDSAYDPGSVDYRIRRFFTAASSVFLTNM 511 (591)
Q Consensus 458 I~tiGiG~~~~~~lL~~LA~~~~G~--~~~v~~~~~l~~~l~~~l~~~~~p~~~~i 511 (591)
||+||+|.++|...|+.||+.++|. ++.+.+.++|.+.+.++++++....+..+
T Consensus 400 i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~~~~~~~~~CG~ 455 (741)
T 3hrz_D 400 VYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGM 455 (741)
T ss_dssp EEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTTSTTC
T ss_pred EEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhhccccccccccc
Confidence 9999999999999999999999994 88889999999999999988765444443
No 21
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.76 E-value=2.2e-18 Score=188.45 Aligned_cols=179 Identities=17% Similarity=0.228 Sum_probs=135.8
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC---
Q 007752 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV--- 398 (591)
Q Consensus 325 p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~--- 398 (591)
|.|++||||.||||.+.+++.+|+++..+++.| +.+++++|+.|++++....+...+ ...+...+.+.|+++.
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~ 79 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEA-DSSNADWVTKQLNEINYED 79 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSG-GGGCHHHHHHHHHHCCGGG
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccc-cccCHHHHHHHHHhCcCcc
Confidence 468999999999999999999999999999875 447999999999998776532212 1123344445566555
Q ss_pred --CCCCCchHHHHHHHHHHhhcC--------CCCccEEEEEecCCCCC---hhhHHHHHHHHH------hcCCCCCCeEE
Q 007752 399 --AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGD---ERGICNEIKSYL------TNTRSISPRIC 459 (591)
Q Consensus 399 --a~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~---~~~~~~~v~~~~------~~~~~~~~~I~ 459 (591)
.+|+|++..||+.|.+.+... ++..+.|||+|||..+. .....+.+++.. ......+++||
T Consensus 80 ~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 159 (497)
T 1rrk_A 80 HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVY 159 (497)
T ss_dssp SCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEE
T ss_pred ccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEE
Confidence 458999999999999998432 23557899999999874 333344444331 11122368999
Q ss_pred EEEcCCCCCHHHHHHHHHhCCC--EEEEcCCCCchHHHHHHHHHHhc
Q 007752 460 TFGVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 460 tiGiG~~~~~~lL~~LA~~~~G--~~~~v~~~~~l~~~l~~~l~~~~ 504 (591)
+||+|...+...|+.||+.++| .++.+.+.+++...+.++++...
T Consensus 160 ~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~~~~ 206 (497)
T 1rrk_A 160 VFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQ 206 (497)
T ss_dssp EEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGG
T ss_pred EecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcccCCC
Confidence 9999999999999999999999 99999988889888888776654
No 22
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.63 E-value=1e-16 Score=188.79 Aligned_cols=176 Identities=18% Similarity=0.162 Sum_probs=134.8
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCC-CeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC-CC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AG 400 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-a~ 400 (591)
..+.|++||||.||||.+.+++.+|+++..+++.+.+. +||+||.|++.++...+.....+.+++ .+.|+.+. .+
T Consensus 128 ~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l---~~ai~~i~~~g 204 (1095)
T 3k6s_A 128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNP---LSLLASVHQLQ 204 (1095)
T ss_dssp CCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSCG---GGGTTTCCCCC
T ss_pred CCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHHH---HHHHhhhhccc
Confidence 44789999999999999999999999999999999864 899999999999877654322222233 34456553 46
Q ss_pred CCCchHHHHHHHHHHhhcC-----CCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC----CCHH
Q 007752 401 GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLY----CNHY 470 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~-~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~----~~~~ 470 (591)
|+|++..||+.|++.+... ++..+.|||||||..+ +.....+.++.... .+++||+||+|.. .+..
T Consensus 205 G~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~----~GI~i~aIGVG~~~~~~~d~~ 280 (1095)
T 3k6s_A 205 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADA----AGIIRYAIGVGLAFQNRNSWK 280 (1095)
T ss_dssp SCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHH----HCEEECCEEBSSGGGSTTSSH
T ss_pred CCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHH----CCCEEEEEecccccccccCHH
Confidence 9999999999998865321 3445799999999984 43333333333322 2599999999987 5888
Q ss_pred HHHHHHHhCCC-EEEEcCCCCchHHHHHHHHHHhcc
Q 007752 471 FLQILAQIGRG-YYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 471 lL~~LA~~~~G-~~~~v~~~~~l~~~l~~~l~~~~~ 505 (591)
.|+.||..++| .++.+.+.++|...+.++.++++.
T Consensus 281 eL~~IAs~p~g~~vf~v~d~~~L~~i~~~L~~~Ic~ 316 (1095)
T 3k6s_A 281 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 316 (1095)
T ss_dssp HHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHT
T ss_pred HHHHHHcCCCCceEEEcCCHHHHHHHHHHhhhhhhc
Confidence 99999999876 677788888888888888887764
No 23
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.6e-14 Score=142.80 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=113.2
Q ss_pred eEEEEEeCCcCCCc-----chHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCc-eeeecccccCCHHHHHHHHHHHhcC
Q 007752 327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLSK---LNPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWLSSL 397 (591)
Q Consensus 327 ~vvfviD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~~~Iv~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~l 397 (591)
.+|||||+|+||.. .+++.+|+++..+++. +++.++++||+|.+.. ..+.+. ..+ ...++..|+.+
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~pl--T~D---~~~il~aL~~l 79 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTF--TAE---FGKILAGLHDT 79 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEE--ESC---HHHHHHHHTTC
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCC--cch---HHHHHHHhhhc
Confidence 37999999999975 5899999999998874 5689999999997764 454432 233 44566668899
Q ss_pred CCCCCCchHHHHHHHHHHhhcC--CCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHHH
Q 007752 398 VAGGGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFLQ 473 (591)
Q Consensus 398 ~a~GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~-~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~-~~~~~lL~ 473 (591)
.++|+|++..+|+.|+..+... +.....||++|||..+ ++.++.+.+++..++ ++.|++||||. ..|...|+
T Consensus 80 ~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~----gI~v~vIgFG~~~~n~~kLe 155 (268)
T 4b4t_W 80 QIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKN----NVAVDIINFGEIEQNTELLD 155 (268)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHH----TEEEEEEEESSCCSSCCHHH
T ss_pred CcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEEeCCCccchHHHH
Confidence 9999999999999999999765 3445689999999765 445555565555443 59999999995 46778999
Q ss_pred HHHHhCCC
Q 007752 474 ILAQIGRG 481 (591)
Q Consensus 474 ~LA~~~~G 481 (591)
.+++..+|
T Consensus 156 ~l~~~~Ng 163 (268)
T 4b4t_W 156 EFIAAVNN 163 (268)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhcC
Confidence 99887655
No 24
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.59 E-value=6.2e-14 Score=133.08 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=111.4
Q ss_pred ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHh---CCCCCeEEEEEeCCC-ceeeecccccCCHHHHHHHHHHHhc
Q 007752 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSK---LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 326 ~~vvfviD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~~~Iv~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
..++|+||.|+||.. ++++.+|.++..|+.. .+++|+++|+.|+++ +....+.+ .+ .......|+.
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT--~d---~~~i~~~L~~ 77 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLT--RD---YGKFLSAMHD 77 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEE--SC---HHHHHHHHTT
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCC--CC---HHHHHHHHHc
Confidence 468999999999973 5899999998887764 367899999999984 77665532 33 4455566788
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCC---CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC-CHHHH
Q 007752 397 LVAGGGTNILLPLKQAIKLLSDTSE---SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC-NHYFL 472 (591)
Q Consensus 397 l~a~GgT~l~~aL~~a~~~l~~~~~---~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~-~~~lL 472 (591)
+.++|+|++..||..|.+.+.+.+. ..+.||+++|+...++.+..+.++...+ .+++|++||+|... |.. |
T Consensus 78 l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~----~gi~v~~Ig~G~~~~~~~-l 152 (192)
T 2x5n_A 78 LPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKK----NNVAIDIIHIGELQNESA-L 152 (192)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHH----TTEEEEEEEESCC---CH-H
T ss_pred CCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHH----CCCEEEEEEeCCCCccHH-H
Confidence 8999999999999999999876431 2234666666664455555444444432 35999999999764 446 9
Q ss_pred HHHHHhC----CCEEEEcCCCC
Q 007752 473 QILAQIG----RGYYDSAYDPG 490 (591)
Q Consensus 473 ~~LA~~~----~G~~~~v~~~~ 490 (591)
+.+|+.+ ++.|..+....
T Consensus 153 ~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 153 QHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp HHHHHHHCSTTCCEEEEECCCS
T ss_pred HHHHHhccCCCceEEEEecCcc
Confidence 9999983 34566565554
No 25
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.50 E-value=7.7e-14 Score=160.04 Aligned_cols=114 Identities=22% Similarity=0.292 Sum_probs=87.8
Q ss_pred CccCceEEEEEeCCcCCCcc------hHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCcee-----e----ec-------
Q 007752 322 KVFRKDVVFLVDVSGSMQGV------LLEQTKNALSASLSKLN--PQDSFNIIAFNGETHL-----F----SS------- 377 (591)
Q Consensus 322 ~~~p~~vvfviD~SgSM~g~------~i~~ak~al~~~l~~L~--~~d~~~Iv~F~~~~~~-----~----~~------- 377 (591)
...+.+++||||.||||.+. +++.+|+++..+++.|. ++|||+||.|++++.. + ..
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n 300 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN 300 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence 45789999999999999986 47889999999998775 4899999999987532 0 00
Q ss_pred ---------------------ccccCCHHHHHHHHHHHhc----------CCCCCCCchHHHHHHHHHHhhc-C-CCCcc
Q 007752 378 ---------------------SMKLASQGTIINATQWLSS----------LVAGGGTNILLPLKQAIKLLSD-T-SESIP 424 (591)
Q Consensus 378 ---------------------~~~~~~~~~~~~a~~~i~~----------l~a~GgT~l~~aL~~a~~~l~~-~-~~~~~ 424 (591)
.....+..++..+.++|.. +.++|||++..||..|++++.. . +...+
T Consensus 301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~k 380 (893)
T 2ww8_A 301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQK 380 (893)
T ss_dssp CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEE
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCe
Confidence 0001245566766677764 3457999999999999999974 2 36678
Q ss_pred EEEEEecCCCC
Q 007752 425 LIFLITDGTVG 435 (591)
Q Consensus 425 ~IillTDG~~~ 435 (591)
.|||||||.++
T Consensus 381 vIILLTDG~pt 391 (893)
T 2ww8_A 381 VIFHITDGVPT 391 (893)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEcCCCCC
Confidence 99999999975
No 26
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.32 E-value=5.5e-12 Score=138.74 Aligned_cols=134 Identities=18% Similarity=0.222 Sum_probs=90.9
Q ss_pred ccCceEEEEEeCCcCCCcc----hHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCC
Q 007752 323 VFRKDVVFLVDVSGSMQGV----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~----~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..+.+++|+||+||||.+. ++...+.++...+..+.++|+++|+.|++..... +.. . ..++..+++.+..+
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~~-~~t--~-~~~l~~~l~~l~~~- 440 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPC-PIT--V-NMLLHEVVEKMSDI- 440 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECC-SCC--T-TSCHHHHHHHHTTC-
T ss_pred CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceEc-CCC--C-cccHHHHHHHHhcC-
Confidence 4678999999999999852 4555333333344445678999999999854332 211 1 12377788888765
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCC
Q 007752 399 AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLY 466 (591)
Q Consensus 399 a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~v~~~~~~~~~~~~~I~tiGiG~~ 466 (591)
++|||++..+|..|++. ....+.|||+|||..+... ...+.+++..+.. ...+++|+||+|+.
T Consensus 441 ~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~-~~~v~l~~igig~~ 504 (538)
T 1yvr_A 441 TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKM-GIPAKLIVCAMTSN 504 (538)
T ss_dssp CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHH-TCCCEEEEEECSSS
T ss_pred CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEEecCC
Confidence 68999999999999876 2345799999999886432 2334443333221 23588899999974
No 27
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.24 E-value=3.7e-11 Score=132.78 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=110.4
Q ss_pred ceEEEEEeCCcCCCc------chHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCcee--------------eecccccC
Q 007752 326 KDVVFLVDVSGSMQG------VLLEQTKNALSASLSK---LNPQDSFNIIAFNGETHL--------------FSSSMKLA 382 (591)
Q Consensus 326 ~~vvfviD~SgSM~g------~~i~~ak~al~~~l~~---L~~~d~~~Iv~F~~~~~~--------------~~~~~~~~ 382 (591)
..++|+||+|+||.. ++++.+++++..+++. .+++|+++||.|+++... +.+ +...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~-l~~~ 86 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRH-LMLP 86 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEE-EECC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeec-CCCC
Confidence 579999999999964 5899999999999994 688999999999987521 111 1123
Q ss_pred CHHHHHHHHHHHhc-CCCC-CCCchHHHHHHHHHHhhcC--CC--CccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCC
Q 007752 383 SQGTIINATQWLSS-LVAG-GGTNILLPLKQAIKLLSDT--SE--SIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSIS 455 (591)
Q Consensus 383 ~~~~~~~a~~~i~~-l~a~-GgT~l~~aL~~a~~~l~~~--~~--~~~~IillTDG~~~~~-~~~~~~v~~~~~~~~~~~ 455 (591)
+...+ +.|.. +.++ ++|++..||..|.+++... .. ..+.|||+|||..+.. ......++.. . ..+
T Consensus 87 ~~~~l----~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l-~---~~g 158 (565)
T 1jey_B 87 DFDLL----EDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSL-K---KCD 158 (565)
T ss_dssp CHHHH----HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHH-H---HTT
T ss_pred CHHHH----HHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHH-H---hcC
Confidence 33333 33554 6666 8999999999999999764 21 3579999999986532 2333333333 2 235
Q ss_pred CeEE-EEEcCCC--------------------------------CCHHHHHHHHHhCCC-----EEEEcCC
Q 007752 456 PRIC-TFGVGLY--------------------------------CNHYFLQILAQIGRG-----YYDSAYD 488 (591)
Q Consensus 456 ~~I~-tiGiG~~--------------------------------~~~~lL~~LA~~~~G-----~~~~v~~ 488 (591)
++|+ +||+|.+ .|..+|+.||+.++| .|+.+.+
T Consensus 159 I~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~ 229 (565)
T 1jey_B 159 ISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSE 229 (565)
T ss_dssp EEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHH
T ss_pred cEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHH
Confidence 9999 8888753 124569999999999 7877654
No 28
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.09 E-value=1.8e-10 Score=126.31 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=96.8
Q ss_pred ccCceEEEEEeCCcCCCc-c-----hHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhc
Q 007752 323 VFRKDVVFLVDVSGSMQG-V-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g-~-----~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
..+.++++++|+||||.+ . ++..+..++...+-.+..+|+++|+.|++..... +. .....+.++++.+..
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~-~~---~~~~~l~~~l~~l~~ 435 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPL-GI---TPRDTLESAMQKAQS 435 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEEC-CC---CTTCCHHHHHHHTCC
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEc-CC---CcchhHHHHHHHHhh
Confidence 457899999999999976 2 2333333333333445568899999999865432 11 112445566666654
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCC---------
Q 007752 397 LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLY--------- 466 (591)
Q Consensus 397 l~a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~v~~~~~~~~~~~~~I~tiGiG~~--------- 466 (591)
. .+|||++..+|..+.+.. .....|||+|||+.+... ...+.+....+. ...+++++++|+|..
T Consensus 436 ~-~~ggTdi~~~l~~a~~~~----~~~~~vIliTD~~~~~g~~~~~~al~~~r~~-~~~~~klv~i~l~~~~~~~~~~~~ 509 (535)
T 2nvo_A 436 V-SFGGTDCAQPILWAAQER----LDVDTFVVYTDNETWAGQVHPTVALDQYAQK-MGRAPKLIVVGLTATEFSIADPQR 509 (535)
T ss_dssp S-SBCCCCTTHHHHHHHHTT----CCCSEEEEEESSCCCCCSSCHHHHHHHHHHH-HSCCCEEEEEETTCSCCCCSCTTC
T ss_pred C-CCCCccHHHHHHHHHHhc----CCCCEEEEEeCCCccCCCCCHHHHHHHHHHh-hCCCCeEEEEeccCCCcccCCCCC
Confidence 3 369999999998886542 345789999999876432 233334333322 123599999999863
Q ss_pred --------CCHHHHHHHHHhCCCEE
Q 007752 467 --------CNHYFLQILAQIGRGYY 483 (591)
Q Consensus 467 --------~~~~lL~~LA~~~~G~~ 483 (591)
.+...|+.||+.++|.|
T Consensus 510 ~~~~~i~g~se~~l~~Ia~~~~G~~ 534 (535)
T 2nvo_A 510 RDMLDVVGFDAAAPNVMTAFARGEV 534 (535)
T ss_dssp SSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred CCceeeeCCCHHHHHHHHHHhCCCc
Confidence 23456777777777665
No 29
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.98 E-value=3.6e-10 Score=109.07 Aligned_cols=93 Identities=24% Similarity=0.249 Sum_probs=70.8
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCceeeecccccCCHHHHHHHHHHHhcCCC
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a 399 (591)
..|.+++||||+||||.+ +++.+|.++..++.++. ..++|+||.|+++.........+.+... .+...+..+.+
T Consensus 132 ~~~~~vvfLVDtSgSM~~-kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~--~~~~~l~~L~a 208 (242)
T 3rag_A 132 EVALHLVVCLDTSASMRD-KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV--NVAALEAELVA 208 (242)
T ss_dssp HSCEEEEEEEECSGGGTT-THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC--CHHHHHHHCCC
T ss_pred cCCCCEEEEEECcccHHH-HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH--HHHHHHhhCCC
Confidence 367999999999999985 99999999999998875 4789999999997521110010111111 34455778899
Q ss_pred CCCCchHHHHHHHHHHhhc
Q 007752 400 GGGTNILLPLKQAIKLLSD 418 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~ 418 (591)
+|+|+++.||..|++++.+
T Consensus 209 gG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 209 RGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp CSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 9999999999999998854
No 30
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=98.87 E-value=1.6e-08 Score=112.42 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=94.3
Q ss_pred ce-EEEEEeCCcCCCc-------chHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCce----------eeecccccCCH
Q 007752 326 KD-VVFLVDVSGSMQG-------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH----------LFSSSMKLASQ 384 (591)
Q Consensus 326 ~~-vvfviD~SgSM~g-------~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~----------~~~~~~~~~~~ 384 (591)
++ ++|+||+|+||.. ++++.+++.+..+++.. +++|+++||.|+++.. .+.+ +...+.
T Consensus 35 ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~-L~~~~~ 113 (609)
T 1jey_A 35 RDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQE-LDNPGA 113 (609)
T ss_dssp EEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEE-EECCCH
T ss_pred ceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEec-CCCCCH
Confidence 45 9999999999964 37999999999999863 6789999999999872 2222 223455
Q ss_pred HHHHHHHHHHh--------c-CCCCCCCchHHHHHHHHHHhhcCCC--CccEEEEEecCCCCChh------hHHHHHHHH
Q 007752 385 GTIINATQWLS--------S-LVAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDER------GICNEIKSY 447 (591)
Q Consensus 385 ~~~~~a~~~i~--------~-l~a~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~------~~~~~v~~~ 447 (591)
+.+....+.++ . +..+.+|++..||..|.+++..... ..+.|||||||..+... .....++ .
T Consensus 114 ~~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~-~ 192 (609)
T 1jey_A 114 KRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAG-D 192 (609)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHH-H
Confidence 44444333221 0 1224689999999999999986522 36799999999875322 2222222 2
Q ss_pred HhcCCCCCCeEEEEEcCCC
Q 007752 448 LTNTRSISPRICTFGVGLY 466 (591)
Q Consensus 448 ~~~~~~~~~~I~tiGiG~~ 466 (591)
+. ..+++|++||+|..
T Consensus 193 l~---~~gI~i~~igig~~ 208 (609)
T 1jey_A 193 LR---DTGIFLDLMHLKKP 208 (609)
T ss_dssp HH---HHTEEEEEEEBCCT
T ss_pred HH---hcCcEEEEEecCCC
Confidence 22 23599999999965
No 31
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.25 E-value=2.9e-06 Score=81.83 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=56.1
Q ss_pred CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC-----CCHHHHHHHHHhCCCEEEEcCCCCchHHH
Q 007752 421 ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-----CNHYFLQILAQIGRGYYDSAYDPGSVDYR 495 (591)
Q Consensus 421 ~~~~~IillTDG~~~~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~-----~~~~lL~~LA~~~~G~~~~v~~~~~l~~~ 495 (591)
...+.|||||||..+.....++..+.+ .. .+++||+||||+. .+...|+.||..|||.|+.++. .++.+.
T Consensus 8 ~~~k~iillTDG~~~~g~~p~~aa~~a-~~---~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~-~~l~~~ 82 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGPDPVEAARRA-HR---HGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP-ADISAT 82 (242)
T ss_dssp CCEEEEEEEESSCCCSSSCHHHHHHHH-HH---TTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG-GGHHHH
T ss_pred CCccEEEEEccCCCCCCCCHHHHHHHH-HH---CCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH-HHHHHH
Confidence 457899999999987554555444433 22 3599999999753 2357899999999999999854 777766
Q ss_pred HHHHHHHh
Q 007752 496 IRRFFTAA 503 (591)
Q Consensus 496 l~~~l~~~ 503 (591)
++.+.++.
T Consensus 83 ~~~~t~~~ 90 (242)
T 3rag_A 83 AQMMTHQT 90 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 32
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.22 E-value=8.8e-05 Score=84.75 Aligned_cols=232 Identities=15% Similarity=0.128 Sum_probs=139.6
Q ss_pred EEecCCCCCCCccCceEEEEEeCCcCCCcc-hHHHHHHHHHHHHHhCCC---CCeEEEEEeCCCceeee--cccc-----
Q 007752 312 YLFPGKSQSRKVFRKDVVFLVDVSGSMQGV-LLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFS--SSMK----- 380 (591)
Q Consensus 312 ~~~P~~~~~~~~~p~~vvfviD~SgSM~g~-~i~~ak~al~~~l~~L~~---~d~~~Iv~F~~~~~~~~--~~~~----- 380 (591)
++.|.......+.|.-++||||+|.++-.. -++.+++++...|+.|++ +.+|+||+|++.++.+. ....
T Consensus 174 y~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~ 253 (810)
T 1pcx_A 174 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES 253 (810)
T ss_dssp EECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC----
T ss_pred EEcCchhccCCCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCcccc
Confidence 334433222345678899999999887322 477899999999999986 57999999999986552 1000
Q ss_pred ---------------------------cCCHHHHHHHHHHHhcCC---CCCCCchHHHHHHHHHHhhcCCCCccEEEEEe
Q 007752 381 ---------------------------LASQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLIT 430 (591)
Q Consensus 381 ---------------------------~~~~~~~~~a~~~i~~l~---a~GgT~l~~aL~~a~~~l~~~~~~~~~IillT 430 (591)
.-....+..+++.|..+. ..+.+.++.||+.|..+++.. + -.|++++
T Consensus 254 ~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~-G--GrI~~F~ 330 (810)
T 1pcx_A 254 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-G--GKIIVVS 330 (810)
T ss_dssp ---CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT-C--EEEEEEE
T ss_pred ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc-C--CEEEEEe
Confidence 011345556666665432 247889999999999998753 2 4788999
Q ss_pred cCCCCChh------h--------------------HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEE
Q 007752 431 DGTVGDER------G--------------------ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484 (591)
Q Consensus 431 DG~~~~~~------~--------------------~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~ 484 (591)
+|.++.+. + ..+.+...+.. ....+.+|+++ +..++-..|..+++.|||..+
T Consensus 331 sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~-~gi~VDlF~~s-~~~~dla~l~~l~~~TGG~v~ 408 (810)
T 1pcx_A 331 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSK-VQITVDLFLAS-EDYMDVASLSNLSRFTAGQTH 408 (810)
T ss_dssp SSCCCSSTTCCCC--------------------CCHHHHHHHHHHH-TTEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred cCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHHH-CCeEEEEEEcc-CCccChHHHHHHHhcCCcEEE
Confidence 98875210 0 01111111111 23445566665 456788899999999999988
Q ss_pred EcCCCCch--HH--HHHH-HHHHhccceEeeEE--EEecCCCcceeeeC---------CCCCCcCCCCeEEEEEEEeCCC
Q 007752 485 SAYDPGSV--DY--RIRR-FFTAASSVFLTNMT--LETSKHLNSLELFP---------SHIPDFCLECPLIVSGRYSGNF 548 (591)
Q Consensus 485 ~v~~~~~l--~~--~l~~-~l~~~~~p~~~~i~--l~~~~~~~~~~v~p---------~~ip~l~~g~~l~v~g~~~g~~ 548 (591)
+..+...- .+ +|.+ +...+..+..-+.. ++...++.....+. -.++.+-.++.+.+.-.+.++.
T Consensus 409 ~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l 488 (810)
T 1pcx_A 409 FYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI 488 (810)
T ss_dssp EEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCC
T ss_pred EcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCC
Confidence 87665421 11 2322 22223223333333 33333332222221 1246677778888888777653
No 33
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.21 E-value=8.2e-05 Score=84.56 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=106.5
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeeccc-----------------------
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSM----------------------- 379 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~----------------------- 379 (591)
+.|.-++||||+|.+. ..++.+++++...|+.|+++.+|+||+|++.+..+.-..
T Consensus 130 p~pp~~vFvIDvS~~a--~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~m 207 (769)
T 2nut_A 130 QMPLIFLYVVDTCMED--EDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEM 207 (769)
T ss_dssp CCCCEEEEEEECCSCH--HHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred CCCCEEEEEEECCccH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHH
Confidence 4577899999999884 578999999999999999999999999999976532110
Q ss_pred ccCC--------------------------HHHHHHHHHHHhcCCC---------CCCCchHHHHHHHHHHhhcC-CCCc
Q 007752 380 KLAS--------------------------QGTIINATQWLSSLVA---------GGGTNILLPLKQAIKLLSDT-SESI 423 (591)
Q Consensus 380 ~~~~--------------------------~~~~~~a~~~i~~l~a---------~GgT~l~~aL~~a~~~l~~~-~~~~ 423 (591)
...+ .+......+.|+++.. .+.+.++.||..|..++... ++..
T Consensus 208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~G 287 (769)
T 2nut_A 208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTG 287 (769)
T ss_dssp HC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCC
Confidence 0010 0111122233444443 46789999999999999732 1223
Q ss_pred cEEEEEecCCCCCh---------h-----------h----------HHHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHH
Q 007752 424 PLIFLITDGTVGDE---------R-----------G----------ICNEIKSYLTNTRSISPRICTFGVG-LYCNHYFL 472 (591)
Q Consensus 424 ~~IillTDG~~~~~---------~-----------~----------~~~~v~~~~~~~~~~~~~I~tiGiG-~~~~~~lL 472 (591)
-.|++++.|.++.+ . + ..+.+...+.. .++.|..|.++ ..++-..|
T Consensus 288 GrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~---~gi~VDlF~~~~~~vdla~l 364 (769)
T 2nut_A 288 ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAAT---TGHVIDIYACALDQTGLLEM 364 (769)
T ss_dssp CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSCCCHHHH
T ss_pred cEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHH---CCeEEEEEeccCCccChHHH
Confidence 46888888876410 0 0 01112222111 23444444444 45788899
Q ss_pred HHHHHhCCCEEEEcCCCCc
Q 007752 473 QILAQIGRGYYDSAYDPGS 491 (591)
Q Consensus 473 ~~LA~~~~G~~~~v~~~~~ 491 (591)
+.|++.|||..++..+...
T Consensus 365 ~~l~~~TGG~~~~~~~F~~ 383 (769)
T 2nut_A 365 KCCPNLTGGYMVMGDSFNT 383 (769)
T ss_dssp THHHHHSSCCEEEESCSSS
T ss_pred HHHhhcCCceEEEcCCCch
Confidence 9999999999998776653
No 34
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.04 E-value=0.00025 Score=81.74 Aligned_cols=231 Identities=15% Similarity=0.130 Sum_probs=137.1
Q ss_pred EEecCCCCCCCccCceEEEEEeCCcCCCcc-hHHHHHHHHHHHHHhCCC---CCeEEEEEeCCCceeeecc---------
Q 007752 312 YLFPGKSQSRKVFRKDVVFLVDVSGSMQGV-LLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSS--------- 378 (591)
Q Consensus 312 ~~~P~~~~~~~~~p~~vvfviD~SgSM~g~-~i~~ak~al~~~l~~L~~---~d~~~Iv~F~~~~~~~~~~--------- 378 (591)
++.|.......+.|.-++||||+|.+.-.. -++.+++++...|+.|++ +.+|+||+|++.+..+.-.
T Consensus 290 yi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~ 369 (926)
T 1m2v_B 290 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES 369 (926)
T ss_dssp EECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-------
T ss_pred EEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCccc
Confidence 344543323345677899999999876322 477889999999999986 5799999999997654110
Q ss_pred -----------------------cc--cCCHHHHHHHHHHHhcCC---CCCCCchHHHHHHHHHHhhcCCCCccEEEEEe
Q 007752 379 -----------------------MK--LASQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLIT 430 (591)
Q Consensus 379 -----------------------~~--~~~~~~~~~a~~~i~~l~---a~GgT~l~~aL~~a~~~l~~~~~~~~~IillT 430 (591)
++ .-....+..+++.|..+. ....+.++.||+.|..+++.. .-.|++++
T Consensus 370 ~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~---GGrI~~F~ 446 (926)
T 1m2v_B 370 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV---GGKIIVVS 446 (926)
T ss_dssp --CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT---CEEEEEEE
T ss_pred ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh---CCEEEEEe
Confidence 00 112445666666666432 247889999999999999753 23688888
Q ss_pred cCCCCCh-----------------hh---------HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEE
Q 007752 431 DGTVGDE-----------------RG---------ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484 (591)
Q Consensus 431 DG~~~~~-----------------~~---------~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~ 484 (591)
.|.++.+ +. ..+.+...+.. ....+.||+++ ...++-..|..|++.|||..+
T Consensus 447 sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~-~gisVDlF~~s-~~~vdla~l~~l~~~TGG~v~ 524 (926)
T 1m2v_B 447 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSK-VQITVDLFLAS-EDYMDVASLSNLSRFTAGQTH 524 (926)
T ss_dssp SSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHH-HTEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred cCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHH-cCeEEEEEEcc-CCCcChHHHHHHHhcCCceEE
Confidence 8876410 00 01112111111 13446677665 456788999999999999988
Q ss_pred EcCCCCch--HH--HHHH-HHHHhccceEeeEEEE--ecCCCcceeeeCC---------CCCCcCCCCeEEEEEEEeCC
Q 007752 485 SAYDPGSV--DY--RIRR-FFTAASSVFLTNMTLE--TSKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGN 547 (591)
Q Consensus 485 ~v~~~~~l--~~--~l~~-~l~~~~~p~~~~i~l~--~~~~~~~~~v~p~---------~ip~l~~g~~l~v~g~~~g~ 547 (591)
+..+...- .+ +|.+ +...+..+..-+..++ ...++.....+-. .++.+-.++.+.+.-.+.++
T Consensus 525 ~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~s~~~~l~~l~~d~s~av~f~~~~~ 603 (926)
T 1m2v_B 525 FYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDES 603 (926)
T ss_dssp EEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSSTTEEEEEEECSSCCEEEEEEECSB
T ss_pred EcCCCcchhhhHHHHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecCccccCcCceEeeccCCCCEEEEEEEeccC
Confidence 77665421 11 2332 2222333344444433 3334322222221 13445566667766666554
No 35
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=98.03 E-value=0.00087 Score=76.20 Aligned_cols=176 Identities=16% Similarity=0.100 Sum_probs=111.2
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCCCCCeEEEEEeCCCceeeeccc------------ccCC-------
Q 007752 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSM------------KLAS------- 383 (591)
Q Consensus 323 ~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~Iv~F~~~~~~~~~~~------------~~~~------- 383 (591)
+.|.-++||||+|.+. ..++.+++++...|+.|+++.+|+||+|++.+..+.-.. ...+
T Consensus 119 ~~pp~~vFvIDvs~~~--~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~ 196 (768)
T 1m2o_A 119 TVPPIFFFVVDLTSET--ENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEM 196 (768)
T ss_dssp CSCCEEEEEEECCSCH--HHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHH
T ss_pred CCCCEEEEEEECCcCH--HHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHH
Confidence 4677899999999886 468999999999999999999999999999876542110 0000
Q ss_pred -----------------------------------HHHHHHHHHHHhcCCC---------CCCCchHHHHHHHHHHhhcC
Q 007752 384 -----------------------------------QGTIINATQWLSSLVA---------GGGTNILLPLKQAIKLLSDT 419 (591)
Q Consensus 384 -----------------------------------~~~~~~a~~~i~~l~a---------~GgT~l~~aL~~a~~~l~~~ 419 (591)
.+......+.|+++.. ...+.++.||..|..++...
T Consensus 197 l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~ 276 (768)
T 1m2o_A 197 LTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGC 276 (768)
T ss_dssp HHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhc
Confidence 0011112233444443 25668999999999999742
Q ss_pred -CCCccEEEEEecCCCCCh---------h-------hH--------------HHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 420 -SESIPLIFLITDGTVGDE---------R-------GI--------------CNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 420 -~~~~~~IillTDG~~~~~---------~-------~~--------------~~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
++..-.|++++.|.++.+ . ++ .+.+...+.. ....+.+|+++ .+.++
T Consensus 277 ~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~-~gi~VDlF~~~-~~~~d 354 (768)
T 1m2o_A 277 YKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAA-NGHTVDIFAGC-YDQIG 354 (768)
T ss_dssp CTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHH-HTCEEEEEEEC-SSCCS
T ss_pred cCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHH-CCeEEEEEEcc-CCccC
Confidence 122346888999876410 0 00 0111111111 12445566654 35678
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007752 469 HYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 469 ~~lL~~LA~~~~G~~~~v~~~~~l~~~l~~~l~~~~ 504 (591)
-..|..+++.|||..++..+... ..+.+-+.+..
T Consensus 355 la~l~~l~~~TGG~v~~y~~f~~--~~~~~~l~r~l 388 (768)
T 1m2o_A 355 MSEMKQLTDSTGGVLLLTDAFST--AIFKQSYLRLF 388 (768)
T ss_dssp HHHHHHHHHHHTCCEEEESCTTS--HHHHHHHHHTT
T ss_pred hHHHhhHhhcCCceEEEcCCCch--HHHHHHHHHHH
Confidence 88999999999999888776643 23444444433
No 36
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=98.03 E-value=9.5e-05 Score=82.55 Aligned_cols=189 Identities=13% Similarity=0.056 Sum_probs=112.4
Q ss_pred ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh---CCCCCeEEEEEeCCCcee-ee---c-c
Q 007752 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK---LNPQDSFNIIAFNGETHL-FS---S-S 378 (591)
Q Consensus 307 ~~f~~~~~P~~~~~~~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~---L~~~d~~~Iv~F~~~~~~-~~---~-~ 378 (591)
-.|.+.+.+.. ..|.|++||+|.|+||.. .|+.+|.....+++. +..+-||++.+|.+.... +. + .
T Consensus 98 ~~f~~~~~~~~-----~~pvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~ 171 (690)
T 3fcs_B 98 KNFSIQVRQVE-----DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE 171 (690)
T ss_dssp EEEEEEEECCB-----TCCEEEEEEEECSGGGHH-HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTT
T ss_pred EEEEEEEeccC-----CCCccEEEEecCCcchHH-HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhh
Confidence 35666666543 368999999999999975 778888776666554 456789999999885421 00 0 0
Q ss_pred c---------------------ccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HHhhcCCCCccEEEEEe
Q 007752 379 M---------------------KLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLIT 430 (591)
Q Consensus 379 ~---------------------~~~~~~~~~~a~~~i~~l~a~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillT 430 (591)
+ ... ..+..+..+.|+.+...|+-+ -.+||..|+ +.+.=+++..+.|||+|
T Consensus 172 ~~~~pc~~~~~~c~~~f~f~~~l~l-t~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~T 250 (690)
T 3fcs_B 172 ALENPCYDMKTTCLPMFGYKHVLTL-TDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTT 250 (690)
T ss_dssp TTTCTTSSSSSCCCCCCSEEEEEEE-ESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEE
T ss_pred hccCCCcCCCCCCCCCccceeeccc-CCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEEC
Confidence 0 011 245666777788777766533 355565555 33322245678999999
Q ss_pred cCCCCC---h------------------------h----hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007752 431 DGTVGD---E------------------------R----GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 431 DG~~~~---~------------------------~----~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~ 479 (591)
|..... . . ..+..+.+.+.+.+ -..||++--+ ...+-+.|+..-
T Consensus 251 Da~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~--i~~ifavt~~---~~~~y~~l~~~i 325 (690)
T 3fcs_B 251 DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN--INLIFAVTEN---VVNLYQNYSELI 325 (690)
T ss_dssp SSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTT--CEEEEEEEGG---GHHHHHHHHHHS
T ss_pred CCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcC--CeEEEEEeCC---chhhHHHHHhhc
Confidence 987530 0 0 01333434333321 1346666322 334456666554
Q ss_pred -CCEEEEc-CCCCchHHHHHHHHHHhccce
Q 007752 480 -RGYYDSA-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 480 -~G~~~~v-~~~~~l~~~l~~~l~~~~~p~ 507 (591)
++....+ .|...+.+.+.+.++++.+.+
T Consensus 326 ~~s~v~~l~~dSsni~~li~~~y~~i~s~v 355 (690)
T 3fcs_B 326 PGTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (690)
T ss_dssp TTCEEEEECTTCTTHHHHHHHHHHHHTTCE
T ss_pred CCceeeeeccccHHHHHHHHHHHHhhhcce
Confidence 4444333 445668888888888887554
No 37
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.01 E-value=1.5e-05 Score=75.67 Aligned_cols=105 Identities=19% Similarity=0.157 Sum_probs=71.1
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCce-eeecccccCCHHHHHHHHHHHhcCCC
Q 007752 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH-LFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 324 ~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~-~~~~~~~~~~~~~~~~a~~~i~~l~a 399 (591)
.|.|++||+|.|+||.+ .++.+|+.+..+.+.| ..+-||++..|.+... ...+ . ..+.....+.++.+..
T Consensus 2 ~pvDl~fl~D~S~SM~~-di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~--l---T~d~~~F~~~v~~~~v 75 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQG-HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILK--L---TADSSQFQRELRKQLV 75 (212)
T ss_dssp CCEEEEEEEECCGGGTT-THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEE--E---ESCHHHHHHHHHTCCC
T ss_pred CceEEEEEEeCCCcchh-HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCC--c---CCCHHHHHHHHhhccc
Confidence 47899999999999986 6889998888777655 4578999999988732 1111 1 1334455666777777
Q ss_pred CCCCc----hHHHHHHHHHH---hhcCCCCccEEEEEecCCCC
Q 007752 400 GGGTN----ILLPLKQAIKL---LSDTSESIPLIFLITDGTVG 435 (591)
Q Consensus 400 ~GgT~----l~~aL~~a~~~---l~~~~~~~~~IillTDG~~~ 435 (591)
.||-+ -.+||..|+.. +.=++ ..+.+||+||+.+.
T Consensus 76 sg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H 117 (212)
T 2iue_A 76 SGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFH 117 (212)
T ss_dssp CCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBC
T ss_pred cCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcc
Confidence 65432 34455555421 11123 67899999999874
No 38
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.75 E-value=0.00052 Score=72.38 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=113.0
Q ss_pred ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCcee-ee------
Q 007752 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHL-FS------ 376 (591)
Q Consensus 307 ~~f~~~~~P~~~~~~~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~-~~------ 376 (591)
-.|.+.+.+.. ..|.|++||+|.|+||.+ .++.+|.....+++.|. .+-|+++.+|-+.... +.
T Consensus 98 ~~f~v~~~~~~-----~ypvDLy~LmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~ 171 (472)
T 3t3p_B 98 KNFSIQVRQVE-----DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE 171 (472)
T ss_dssp EEEEEEEECCS-----SCCEEEEEEEECSGGGHH-HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHH
T ss_pred EEEEEEeecCC-----CCCceEEEEEccCcchHH-HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhh
Confidence 35666666543 368999999999999975 78888887777766554 5779999999886310 00
Q ss_pred ----cc---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HHhhcCCCCccEEEEEe
Q 007752 377 ----SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLIT 430 (591)
Q Consensus 377 ----~~---------------~~~~~~~~~~~a~~~i~~l~a~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillT 430 (591)
|. ..+. .++..+..+.|+.....|+-+ -.+||..|+ +.+.=+.+..+.+||+|
T Consensus 172 ~l~nPc~~~~~~c~p~f~fr~~l~L-T~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~T 250 (472)
T 3t3p_B 172 ALENPCYDMKTTCLPMFGYKHVLTL-TDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTT 250 (472)
T ss_dssp HHHCTTTTTTSCCCCCCSEEEEEEE-ESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEE
T ss_pred hhcCCCcccccCCCCCcceeEeecc-CCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEEC
Confidence 00 0011 235566666777777766533 345555554 22221235678999999
Q ss_pred cCCCC--------------C------hh-----------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007752 431 DGTVG--------------D------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 431 DG~~~--------------~------~~-----------~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~ 479 (591)
|.... | .. ..+..+.+.+.+. .-..||++- .......+.|+..-
T Consensus 251 Da~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~--nI~~IFAVt---~~~~~~Y~~L~~~i 325 (472)
T 3t3p_B 251 DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQK--NINLIFAVT---ENVVNLYQNYSELI 325 (472)
T ss_dssp SSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHT--TCEEEEEEC---GGGHHHHHHHHHTS
T ss_pred CCCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhc--CccEEEEEe---ccchhHHHHHHHhC
Confidence 98642 0 00 0133344433332 124577772 22344567777765
Q ss_pred CCE-EEEc-CCCCchHHHHHHHHHHhccce
Q 007752 480 RGY-YDSA-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 480 ~G~-~~~v-~~~~~l~~~l~~~l~~~~~p~ 507 (591)
.|. .-.+ .|...+-+.+.+.++++.+.+
T Consensus 326 p~s~vg~L~~dSsNiv~LI~~aY~~i~s~V 355 (472)
T 3t3p_B 326 PGTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (472)
T ss_dssp TTCEEEECCTTSTTHHHHHHHHHHHHTTCE
T ss_pred CCceeeeccccchhHHHHHHHHHHHhheEE
Confidence 444 3333 455678888888888887654
No 39
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.74 E-value=0.0044 Score=70.09 Aligned_cols=223 Identities=12% Similarity=0.119 Sum_probs=132.0
Q ss_pred CCccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhCCCCC--eEEEEEeCCCceeeecc-------------------
Q 007752 321 RKVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQD--SFNIIAFNGETHLFSSS------------------- 378 (591)
Q Consensus 321 ~~~~p~~vvfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~d--~~~Iv~F~~~~~~~~~~------------------- 378 (591)
+.+.|.-++||||+|-. +...-++.+++++...|+.|+++. +|++|+|++.++.+.-.
T Consensus 156 r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~ 235 (751)
T 3eh1_A 156 RPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFL 235 (751)
T ss_dssp SSCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTS
T ss_pred CCCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCC
Confidence 34568889999999853 333357888999999999998765 89999999987542100
Q ss_pred ------c--ccCCHHHHHHHHHHHhcCCCC---CCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCCCh----------
Q 007752 379 ------M--KLASQGTIINATQWLSSLVAG---GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE---------- 437 (591)
Q Consensus 379 ------~--~~~~~~~~~~a~~~i~~l~a~---GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~---------- 437 (591)
+ ..-....+..+++.|..+-.. ..+.++.||+.|..+++.. .-.|++++.|.++.+
T Consensus 236 P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~---GGrI~~F~sg~pt~GpG~l~~r~~~ 312 (751)
T 3eh1_A 236 PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT---GGRVSVFQTQLPSLGAGLLQSREDP 312 (751)
T ss_dssp CCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT---CEEEEEEECSCCCSSTTCCCCCCCS
T ss_pred CChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC---CCEEEEEecCCCCCCCCcccccccc
Confidence 0 112345667777766654333 4678999999999998752 236777878766411
Q ss_pred ---------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch-----HHHHH
Q 007752 438 ---------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV-----DYRIR 497 (591)
Q Consensus 438 ---------------~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l-----~~~l~ 497 (591)
....+.+...+.. ....+.+|.++ ...++-..|..+++.|||..++..+...- ..+|.
T Consensus 313 ~~~~~~ke~~~~~~a~~fY~~la~~~~~-~~i~VDlF~~s-~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~ 390 (751)
T 3eh1_A 313 NQRSSTKVVQHLGPATDFYKKLALDCSG-QQTAVDLFLLS-SQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQ 390 (751)
T ss_dssp CGGGGSSSCTTCSCSCSHHHHHHHHHHH-TTEEEEEEECC-SSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHH
T ss_pred ccCCCchhhhhhcchHHHHHHHHHHHHh-cCceEEEEEcc-CcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHH
Confidence 0112222222221 12334455543 34678889999999999999987665421 12333
Q ss_pred HHHH-HhccceEeeE--EEEecCCCcceeeeC---------CCCCCcCCCCeEEEEEEEeCCC
Q 007752 498 RFFT-AASSVFLTNM--TLETSKHLNSLELFP---------SHIPDFCLECPLIVSGRYSGNF 548 (591)
Q Consensus 498 ~~l~-~~~~p~~~~i--~l~~~~~~~~~~v~p---------~~ip~l~~g~~l~v~g~~~g~~ 548 (591)
+-+. .+.....-+. +++...++.....+. -.++.+-.++.+.+.-.+.++.
T Consensus 391 ~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l 453 (751)
T 3eh1_A 391 KDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESL 453 (751)
T ss_dssp HHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSEECSSSEEEEEEECTTCCEEEEEEESSCC
T ss_pred HHHHHHHhhhhccceEEEEEecCCeEEEEeeCCeEeCCCCceEeccCCCCCEEEEEEEEcCCC
Confidence 3222 2223333333 333334432222221 1244555666777777776654
No 40
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.59 E-value=0.0099 Score=67.44 Aligned_cols=225 Identities=13% Similarity=0.153 Sum_probs=133.4
Q ss_pred CCccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhCCCC-------CeEEEEEeCCCceeee----------------
Q 007752 321 RKVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ-------DSFNIIAFNGETHLFS---------------- 376 (591)
Q Consensus 321 ~~~~p~~vvfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~-------d~~~Iv~F~~~~~~~~---------------- 376 (591)
..+.|--++||||+|-. ....-++.+++++...|+.|+++ .+|++|+|++.++.+.
T Consensus 173 ~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~ 252 (770)
T 3efo_B 173 KPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDV 252 (770)
T ss_dssp SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCT
T ss_pred CCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEeccc
Confidence 34567889999999854 44447889999999999999865 5999999999875421
Q ss_pred -----c----cccc--CCHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC-C-h---
Q 007752 377 -----S----SMKL--ASQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-D-E--- 437 (591)
Q Consensus 377 -----~----~~~~--~~~~~~~~a~~~i~~l---~a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~-~-~--- 437 (591)
| .+++ -....+..+++.|..+ ....+|.++.||+.|+..+..... .-.|++++.|.++ . .
T Consensus 253 ~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~-GGkI~~F~s~lP~t~GpG~l 331 (770)
T 3efo_B 253 GEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADC-PGKLFIFHSSLPTAEAPGKL 331 (770)
T ss_dssp TSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTC-CEEEEEEECSCCCSSSTTCC
T ss_pred ccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCC-CcEEEEEecCCCCcCCCccc
Confidence 0 0111 1245566666666533 234778899999999998864222 2356667666543 1 0
Q ss_pred ---------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCc--hHH
Q 007752 438 ---------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGS--VDY 494 (591)
Q Consensus 438 ---------------------~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~--l~~ 494 (591)
....+.+...+.. ....+.+|+++ ...++-..|..+++.|||..++..+... -..
T Consensus 332 ~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~-~~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~ 409 (770)
T 3efo_B 332 KNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVA-HGCSVTLFLFP-SQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQ 409 (770)
T ss_dssp CCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHH-TTEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHH
T ss_pred cccccccccCCcchhhhhcchHHHHHHHHHHHHH-cCeEEEEEEec-CCccChHHHHHHHhhcCceEEEecCCcchhHHH
Confidence 0112222222221 12345555543 3457888999999999999998776642 233
Q ss_pred HHHHHHHHh-ccceEeeE--EEEecCCCcceeeeCC---------CCCCcCCCCeEEEEEEEeCCC
Q 007752 495 RIRRFFTAA-SSVFLTNM--TLETSKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGNF 548 (591)
Q Consensus 495 ~l~~~l~~~-~~p~~~~i--~l~~~~~~~~~~v~p~---------~ip~l~~g~~l~v~g~~~g~~ 548 (591)
++.+.+.+. .....-+. +++...++.....+.. .++.+-.++.+.+.-.+.++.
T Consensus 410 ~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l 475 (770)
T 3efo_B 410 QFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKL 475 (770)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCC
T ss_pred HHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCC
Confidence 444434333 33433333 3333344322222211 244555667777776766543
No 41
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.58 E-value=0.00028 Score=78.56 Aligned_cols=188 Identities=16% Similarity=0.116 Sum_probs=106.6
Q ss_pred ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHH---HhCCCCCeEEEEEeCCCcee-ee------
Q 007752 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASL---SKLNPQDSFNIIAFNGETHL-FS------ 376 (591)
Q Consensus 307 ~~f~~~~~P~~~~~~~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l---~~L~~~d~~~Iv~F~~~~~~-~~------ 376 (591)
-.|.+.+.+.. ..|.|++||+|.|+||.. .++.+|.....++ +.+..+-||++.+|.+.... +.
T Consensus 91 ~~f~~~~~~~~-----~ypvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~ 164 (687)
T 3k6s_B 91 AAFNVTFRRAK-----GYPIDLYYLMDLSYSMLD-DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDK 164 (687)
T ss_dssp EEEEEEECCCC-----CCCCEEEEEEECSSTTHH-HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTT
T ss_pred eEEEEEEeccC-----CCceeEEEEEcCCcchHH-HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchh
Confidence 35666666544 367999999999999975 6777776655554 45567889999999885321 00
Q ss_pred ---cc---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HHhhcCCCCccEEEEEec
Q 007752 377 ---SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLITD 431 (591)
Q Consensus 377 ---~~---------------~~~~~~~~~~~a~~~i~~l~a~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillTD 431 (591)
|. .... ..+..+..+.|+.....|+-+ -.+||..|+ +.+.=+. ..+.|||+||
T Consensus 165 ~~~Pc~~~~~~c~~~f~f~~~l~l-t~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TD 242 (687)
T 3k6s_B 165 LRNPCPNKEKECQPPFAFRHVLKL-TNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATD 242 (687)
T ss_dssp TTCCCCSCCCCCCCCCSCEEEEEE-ESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECS
T ss_pred ccCCCCCCCCCcCCcccceeeccc-CCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECC
Confidence 00 0011 234455666677777765533 345555554 2222123 6789999999
Q ss_pred CCCCC---h-----------------------hh----HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHh-CC
Q 007752 432 GTVGD---E-----------------------RG----ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI-GR 480 (591)
Q Consensus 432 G~~~~---~-----------------------~~----~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~-~~ 480 (591)
..... . .. .+..+.+.+.+.+ -..||++-- .....-+.|+.. ++
T Consensus 243 a~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~--I~~ifavt~---~~~~~y~~l~~~i~~ 317 (687)
T 3k6s_B 243 DGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENN--IQPIFAVTS---RMVKTYEKLTEIIPK 317 (687)
T ss_dssp SCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTT--CBCCEEECG---GGHHHHHHHHHHSSS
T ss_pred CccccCCCccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHHcC--CeEEEEEec---cchhhHHHHHhhcCC
Confidence 87530 0 00 0222333333221 144666622 233455666655 44
Q ss_pred CEEEEc-CCCCchHHHHHHHHHHhccce
Q 007752 481 GYYDSA-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 481 G~~~~v-~~~~~l~~~l~~~l~~~~~p~ 507 (591)
+....+ .|...+.+.+.+.++++.+.+
T Consensus 318 s~v~~L~~dSsni~~li~~ay~~i~s~v 345 (687)
T 3k6s_B 318 SAVGELSEDSSNVVQLIKNAYNKLSSRV 345 (687)
T ss_dssp CCEEECCTTCCSCGGGTTTHHHHHSSCC
T ss_pred ceeeeeccccHHHHHHHHHHHHhhhcee
Confidence 444443 344557777777777776543
No 42
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.52 E-value=0.013 Score=66.38 Aligned_cols=225 Identities=12% Similarity=0.143 Sum_probs=132.8
Q ss_pred CCccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhCCCC-------CeEEEEEeCCCceeee----------------
Q 007752 321 RKVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ-------DSFNIIAFNGETHLFS---------------- 376 (591)
Q Consensus 321 ~~~~p~~vvfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~-------d~~~Iv~F~~~~~~~~---------------- 376 (591)
..+.|--++||||+|-. ....-++.+++++...|+.|+++ .+|++|+|++.++.+.
T Consensus 169 ~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl 248 (766)
T 3eh2_A 169 KFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDV 248 (766)
T ss_dssp SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCT
T ss_pred CCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecCh
Confidence 34567889999999853 33346889999999999999865 6899999999875421
Q ss_pred -----c----cccc--CCHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHHhhcCCCCccEEEEEecCCCC--Ch---
Q 007752 377 -----S----SMKL--ASQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG--DE--- 437 (591)
Q Consensus 377 -----~----~~~~--~~~~~~~~a~~~i~~l---~a~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~--~~--- 437 (591)
| .+++ -....+..+++.|..+ ....+|.++.||+.|+..+.... ..-.|++++.|.++ +.
T Consensus 249 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~-~GGkI~~F~s~lP~t~GpG~l 327 (766)
T 3eh2_A 249 ADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAE-CAGKLFLFHTSLPIAEAPGKL 327 (766)
T ss_dssp TTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTT-CCEEEEEEECSCCCSSSTTCC
T ss_pred hhhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCC-CCcEEEEEecCCCCcCCCccc
Confidence 1 0111 1245666666666533 33477889999999999886532 23456667666543 10
Q ss_pred ---------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch--HH
Q 007752 438 ---------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV--DY 494 (591)
Q Consensus 438 ---------------------~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l--~~ 494 (591)
....+.+...+.. ....+.+|+++ ...++-..|..+++.|||..++..+...- ..
T Consensus 328 ~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~-~~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~ 405 (766)
T 3eh2_A 328 KNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVA-QGCCVDLFLFP-NQYVDVATLSVVPQLTGGSVYKYASFQVENDQE 405 (766)
T ss_dssp CCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHH-HTEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHH
T ss_pred ccccccccCCCcchhhhccchHHHHHHHHHHHHh-CCeEEEEEEec-CCCcChHHHHHHHhhcCceEEEeCCCcchhHHH
Confidence 0111222222211 12334555543 35578889999999999999987766432 23
Q ss_pred HHHHHHHHh-ccceEeeEEE--EecCCCcceeeeCC---------CCCCcCCCCeEEEEEEEeCCC
Q 007752 495 RIRRFFTAA-SSVFLTNMTL--ETSKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGNF 548 (591)
Q Consensus 495 ~l~~~l~~~-~~p~~~~i~l--~~~~~~~~~~v~p~---------~ip~l~~g~~l~v~g~~~g~~ 548 (591)
++.+.+.+. ..+..-+..+ +...++.....+.. .++.+-.++.+.+.-++.++.
T Consensus 406 ~f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l 471 (766)
T 3eh2_A 406 RFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRL 471 (766)
T ss_dssp HHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCC
T ss_pred HHHHHHHHHhhhcceeeEEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCC
Confidence 344433333 2344334333 33344322222211 234455566777766666543
No 43
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.44 E-value=0.0048 Score=64.62 Aligned_cols=187 Identities=14% Similarity=0.082 Sum_probs=111.2
Q ss_pred eEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhCC---CCCeEEEEEeCCCcee-ee-------
Q 007752 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHL-FS------- 376 (591)
Q Consensus 308 ~f~~~~~P~~~~~~~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~~~Iv~F~~~~~~-~~------- 376 (591)
.|.+.+.+.. ..|.|++||+|.|+||.+ .++.+|.....+++.|. .+-|+++.+|-+.... +.
T Consensus 110 ~f~v~~~~~~-----~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~ 183 (454)
T 3vi3_B 110 TFTLKFKRAE-----DYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKL 183 (454)
T ss_dssp CEEEEEECCS-----CCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTT
T ss_pred EEEEEEecCC-----CCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHh
Confidence 4666665543 368999999999999975 78888887777766554 5779999999875210 00
Q ss_pred --cc--------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHHH---HhhcCCCCccEEEEEecCC
Q 007752 377 --SS--------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAIK---LLSDTSESIPLIFLITDGT 433 (591)
Q Consensus 377 --~~--------------~~~~~~~~~~~a~~~i~~l~a~GgT~----l~~aL~~a~~---~l~~~~~~~~~IillTDG~ 433 (591)
|. .... .++..+..+.++.....|+-+ -.+||..|.- .+. -....+.+||+||..
T Consensus 184 ~nPC~~~~~c~~~f~fr~~l~L-T~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~ig-WR~a~rllV~~TDa~ 261 (454)
T 3vi3_B 184 RNPCTSEQNCTTPFSYKNVLSL-TNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIG-WRNVTRLLVFSTDAG 261 (454)
T ss_dssp TCCSCSSSCCCCCCSEEEEEEE-ESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHT-CCSSEEEEEEEESSC
T ss_pred cCCCcCccCCCCCcceeeeeec-CCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccC-CccceEEEEEECCCC
Confidence 00 0011 145666777788888776643 2444444432 111 122667899999987
Q ss_pred CC---Ch---------------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007752 434 VG---DE---------------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (591)
Q Consensus 434 ~~---~~---------------------------~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~G~~ 483 (591)
.. |. -..+..+.+.+.+. .-..||++-- .....-+.|+..=.|..
T Consensus 262 fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~--nI~~IFAVt~---~~~~~Y~~L~~~ip~s~ 336 (454)
T 3vi3_B 262 FHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSEN--NIQTIFAVTE---EFQPVYKELKNLIPKSA 336 (454)
T ss_dssp BCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHT--TEEEEEEEEG---GGHHHHHHHHHHSTTEE
T ss_pred cCcCCCccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhc--CCcEEEEEcC---ccchHHHHHHHhCCCce
Confidence 42 10 00133444443332 1134777632 13345577777655543
Q ss_pred E-Ec-CCCCchHHHHHHHHHHhccce
Q 007752 484 D-SA-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 484 ~-~v-~~~~~l~~~l~~~l~~~~~p~ 507 (591)
. .+ .|...+-+.+.+.++++.+.+
T Consensus 337 vg~Ls~dSsNiv~LI~~aY~~i~S~V 362 (454)
T 3vi3_B 337 VGTLSANSSNVIQLIIDAYNSLSSEV 362 (454)
T ss_dssp EEEECTTCTTHHHHHHHHHHHHHTCE
T ss_pred eeEccccchhHHHHHHHHHHHhheEE
Confidence 3 33 445678888888888887654
No 44
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=97.32 E-value=0.0042 Score=65.83 Aligned_cols=188 Identities=18% Similarity=0.154 Sum_probs=110.3
Q ss_pred ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhC---CCCCeEEEEEeCCCcee-ee------
Q 007752 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHL-FS------ 376 (591)
Q Consensus 307 ~~f~~~~~P~~~~~~~~~p~~vvfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~~~Iv~F~~~~~~-~~------ 376 (591)
-.|.+.+.+.. ..|.|++||+|.|+||.. .++.+|.....+++.| ..+-|+++.+|-+.... +.
T Consensus 119 ~~f~v~~~~~~-----~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~ 192 (503)
T 3v4v_B 119 QQLQVRFLRAE-----GYPVDLYYLMDLSYSMKD-DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSK 192 (503)
T ss_dssp EEEEEEEECCS-----SCCEEEEEEEECSGGGHH-HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHH
T ss_pred EEEEEEEEccC-----CCceeEEEEEecCcchhh-HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHH
Confidence 45666666554 368999999999999975 7888888777776655 45779999999875310 00
Q ss_pred ---cc---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HHhhcCCCCccEEEEEec
Q 007752 377 ---SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLITD 431 (591)
Q Consensus 377 ---~~---------------~~~~~~~~~~~a~~~i~~l~a~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillTD 431 (591)
|. ..+. .++..+..+.|+.....|+-+ -.+||..|+ +.+. -....+.+||+||
T Consensus 193 l~~PC~~~~~~c~p~f~fr~~l~L-T~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~Ig-WR~a~rllV~~TD 270 (503)
T 3v4v_B 193 LRHPCPTRLERCQSPFSFHHVLSL-TGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIG-WRNVSRLLVFTSD 270 (503)
T ss_dssp HHCCSSCSSSCCCCCCSEEEEEEE-ESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHT-CCSSEEEEEEEES
T ss_pred hcCCCcCCCCCCCCCcceEEEEEe-cCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccC-CCcceEEEEEECC
Confidence 00 0011 134556667788777766533 345555554 2221 1235678999999
Q ss_pred CCCC--------------C------hh-----------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCC
Q 007752 432 GTVG--------------D------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR 480 (591)
Q Consensus 432 G~~~--------------~------~~-----------~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~~~lL~~LA~~~~ 480 (591)
.... | .. ..+..+.+.+.+.+ -..||++ -. ......+.|+..=.
T Consensus 271 A~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~enn--I~~IFAV--t~-~~~~~Y~~L~~~ip 345 (503)
T 3v4v_B 271 DTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAAN--IQPIFAV--TS-AALPVYQELSKLIP 345 (503)
T ss_dssp SCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHT--EEEEEEE--CS-SSHHHHHHHHTTST
T ss_pred CCcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcC--CeEEEEE--cc-cchhHHHHHHHhCC
Confidence 8642 0 00 01233333332211 1346666 22 23455677776644
Q ss_pred -CEEEEc-CCCCchHHHHHHHHHHhccce
Q 007752 481 -GYYDSA-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 481 -G~~~~v-~~~~~l~~~l~~~l~~~~~p~ 507 (591)
+..-.+ .|...+-+.+.+.++++.+.+
T Consensus 346 ~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V 374 (503)
T 3v4v_B 346 KSAVGELSEDSSNVVQLIMDAYNSLSSTV 374 (503)
T ss_dssp TCEEEECCTTSCTHHHHHHHHHHHHHTCE
T ss_pred CceeeEccccchhHHHHHHHHHHHhheEE
Confidence 444443 344678888888888887654
No 45
>4g2a_A Hypothetical protein; two domains protein, yarhg domain (PFAM13308), DUF4424 (PF14 structural genomics; HET: MSE; 2.33A {Legionella pneumophila subsp}
Probab=96.14 E-value=0.17 Score=50.34 Aligned_cols=111 Identities=12% Similarity=0.169 Sum_probs=77.1
Q ss_pred CCccccccceeEEEE-----EEEE-------eeeEEEEEEEEEEecccCCCceeeEEEEeecCCC---------------
Q 007752 78 PPALIPLHMHGVEME-----VDCC-------LDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGER--------------- 130 (591)
Q Consensus 78 ~~~~~pL~~~~v~v~-----v~~~-------i~~a~v~~~~~f~n~~~~~~~~~e~~y~fPL~~~--------------- 130 (591)
+..++||+...|.+. |+.. -..+.|+|.-+|.| ++.......+.||+|..
T Consensus 10 g~~~iP~~~s~Ism~kE~i~ik~~~~~~~~~~~~~~V~v~f~F~N---p~~~~ktI~vgFP~p~~~~~~~~~~~~~~~~~ 86 (322)
T 4g2a_A 10 GSLPIPVSQPHIKMVSELIRISGKNLNEPQMNGSWHYNCNFTFKN---TLNKEVTISMAFPFPINDGNSEIALPAGQQTN 86 (322)
T ss_dssp EECCEESSCCSEEEEEEEEEEEEESTTCTTCCCEEEEEEEEEEEE---CSSSCEEEEEEEEECBCCSSSEECCCTTCCCC
T ss_pred CCeeeeeccCceeEEEEEEEEEeccccccccccceEEEEEEEEeC---CCCCcEEEEEEecCCCccCCcccccccccCCC
Confidence 345778877666554 3211 12477999999999 67788889899998832
Q ss_pred ---eeEEEEEEEECCEEEEEEEEehhhhhhhhhhccccCCccceecCceEEEccCCCCCCEEEEEEEEEEeeecc
Q 007752 131 ---GSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYE 202 (591)
Q Consensus 131 ---a~V~~f~~~i~gk~i~~~v~~k~~a~~~~~~~~~~~~~~ll~~~~F~~~v~~i~~~~~v~v~i~y~q~L~~~ 202 (591)
..+.+|...||||.+..++.....-. +.+.--.+.|.... ..++|+++.|+-+|.-.+...
T Consensus 87 ~~~~~i~dFkt~VNGk~V~~~~~~~a~~~----------~k~v~~~~~Y~f~~-~F~~G~~~~V~HsY~~~~s~~ 150 (322)
T 4g2a_A 87 VGQALVYDFLVTVNDKQVSAQRGNIAPDQ----------NKGLYYEDAYFWKT-TFPPLATVNIHHDYSTGATYD 150 (322)
T ss_dssp TTCBSCEEEEEEETTEEECCEEEECCCBG----------GGTBCCSEEEEEEE-EECTTCEEEEEEEEEEECEEE
T ss_pred CCCcceeeEEEEECCEEcccchhhcCccc----------cCCcccceeEEEee-ecCCCCeeEEEEEEEecCcCC
Confidence 23889999999999988876433211 11111234566555 689999999999998776654
No 46
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=37.81 E-value=1e+02 Score=25.81 Aligned_cols=91 Identities=18% Similarity=0.342 Sum_probs=48.7
Q ss_pred EEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehhhhhhh-hhhccccCC
Q 007752 89 VEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYK-ENVGKSKGD 167 (591)
Q Consensus 89 v~v~v~~~i~~a~v~~~~~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~-~~~~~~~~~ 167 (591)
+.+.|+..-.-..+.++.+..| +++.+++..| + .|+.++-.|.+++..+.+ +.
T Consensus 7 l~~~v~~~~~g~~v~~~ltv~N---~s~~~v~l~f--~--------------Sgq~~Df~v~d~~G~~VwrwS------- 60 (120)
T 3isy_A 7 VVLSIDAIQEPEQIKFNMSLKN---QSERAIEFQF--S--------------TGQKFELVVYDSEHKERYRYS------- 60 (120)
T ss_dssp EEEEEEEEECSSCEEEEEEEEE---CSSSCEEEEE--S--------------SSCCEEEEEECTTCCEEEETT-------
T ss_pred EEEEEeeccCCCeEEEEEEEEc---CCCCcEEEEe--C--------------CCCEEEEEEECCCCCEEEEcc-------
Confidence 3444443332234677777888 5777766433 2 244444455543321111 00
Q ss_pred ccceecCceEEEcc--CCCCCCEEEEEEEEEEeeecccCeEEEEEe
Q 007752 168 GRYLKGQIYTLRIP--QVDGGSTLSIKVNWSQKLTYEEGQFCLSVP 211 (591)
Q Consensus 168 ~~ll~~~~F~~~v~--~i~~~~~v~v~i~y~q~L~~~~g~~~~~lp 211 (591)
+..+|+.-+. .|+||+.+..+.+|.+ ....|.|.+..-
T Consensus 61 ----~~~~FtQa~~~~tl~pGE~~~f~~~w~~--~~~pG~Ytl~a~ 100 (120)
T 3isy_A 61 ----KEKMFTQAFQNLTLESGETYDFSDVWKE--VPEPGTYEVKVT 100 (120)
T ss_dssp ----TTCCCCCCCEEEEECTTCEEEEEEEESS--CCCSEEEEEEEE
T ss_pred ----ccchhhhhhceEEECCCCEEEEEEEeCC--CCCCccEEEEEE
Confidence 1233433222 4899999999999984 223678876553
No 47
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=30.90 E-value=1.9e+02 Score=30.64 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007752 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 406 ~~aL~~a~~~l~~~~~~~~~IillTDG~~~-~~~~~~~~v~~~~~~~~~~~~~I~tiGiG~~~~ 468 (591)
..+|..+++...+..+..-.+=|+|||-+. ....+...++-+ ...+-..+.||+|.=|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~H~~gl~sdggvhsh~~hl~~l~~~a-~~~g~~~v~~H~~~dGrD~~ 156 (511)
T 1o98_A 94 NETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLA-AKEGVKRVYIHGFLDGRDVG 156 (511)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHH-HHTTCCCEEEEEEECSSSSC
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCCccHHHHHHHHHHHH-HHCCCCeEEEEEEccCCCCC
Confidence 345555555544333444566788888774 334444444333 33333456777777776654
Done!