BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007756
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 125/304 (41%), Gaps = 46/304 (15%)
Query: 269 LMRILNVAAFAVSGYAS-------TEGRICKPFNPLLGETY-----EADYPDKG-LQFFS 315
L R+L V + +S S + G KP NP LGE + ++P+ G S
Sbjct: 54 LARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLS 113
Query: 316 EKVSHHPMIVACHC--QGTGWKFWGDSNLKSKFWGRSIQL--DPVGVLTLEFDDGEVFQW 371
E+VSHHP + A K G + +K+ F +S+ L G L+ D E +
Sbjct: 114 EQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTMLDIKD-ESYLV 171
Query: 372 SKVTSSIYNLILGKLYCDHYGTMRIEGNREYSCKLKFKEQSIID--RNPHQVHGIVQDRN 429
+ I +++ + + G I+ + C ++F S +D +N + ++
Sbjct: 172 TPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEF---SGVDGKKNSFKARIYKDSKD 228
Query: 430 GKTVATLFGKWDESIHYVIGECSGKGKELESLSEACLLWKRSKPPKYPTRYNFTRFAITL 489
K +++++ + G+ SG K + K +K + Y+ R
Sbjct: 229 SKDK-------EKALYTISGQWSGSSK----------IIKANKKEESRLFYDAARIPAEH 271
Query: 490 NEVTPGLKEKLPPTDSRLRPD-QRCLENGEYEMANSEKLRLEQRQRQARKMQEN---GWK 545
V P L+E+ P + D ++ G++ + K LE+ QR+ RK +E W+
Sbjct: 272 LNVKP-LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQ 330
Query: 546 PRWF 549
RWF
Sbjct: 331 RRWF 334
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 123/304 (40%), Gaps = 43/304 (14%)
Query: 269 LMRILNVAAFAVSGYAS-------TEGRICKPFNPLLGETY-----EADYPDKG-LQFFS 315
L R+L V + +S S + G KP NP LGE + ++P+ G S
Sbjct: 83 LARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLS 142
Query: 316 EKVSHHPMIVACHC--QGTGWKFWGDSNLKSKFWGRSIQL--DPVGVLTLEFDDGEVFQW 371
E+VSHHP + A K G + +K+ F +S+ L G L+ D E +
Sbjct: 143 EQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTMLDIKD-ESYLV 200
Query: 372 SKVTSSIYNLILGKLYCDHYGTMRIEGNREYSCKLKFKEQSIID--RNPHQVHGIVQDRN 429
+ I +++ + + G I+ + C ++F + +N + ++
Sbjct: 201 TPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGKKNSFKARIYKDSKD 260
Query: 430 GKTVATLFGKWDESIHYVIGECSGKGKELESLSEACLLWKRSKPPKYPTRYNFTRFAITL 489
K +++++ + G+ SG K + K +K + Y+ R
Sbjct: 261 SKDK-------EKALYTISGQWSGSSK----------IIKANKKEESRLFYDAARIPAEH 303
Query: 490 NEVTPGLKEKLPPTDSRLRPD-QRCLENGEYEMANSEKLRLEQRQRQARKMQEN---GWK 545
V P L+E+ P + D ++ G++ + K LE+ QR+ RK +E W+
Sbjct: 304 LNVKP-LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQ 362
Query: 546 PRWF 549
RWF
Sbjct: 363 RRWF 366
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 123/304 (40%), Gaps = 43/304 (14%)
Query: 269 LMRILNVAAFAVSGYAS-------TEGRICKPFNPLLGETY-----EADYPDKG-LQFFS 315
L R+L V + +S S + G KP NP LGE + ++P+ G S
Sbjct: 81 LARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLS 140
Query: 316 EKVSHHPMIVACHC--QGTGWKFWGDSNLKSKFWGRSIQL--DPVGVLTLEFDDGEVFQW 371
E+VSHHP + A K G + +K+ F +S+ L G L+ D E +
Sbjct: 141 EQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTMLDIKD-ESYLV 198
Query: 372 SKVTSSIYNLILGKLYCDHYGTMRIEGNREYSCKLKFKEQSIID--RNPHQVHGIVQDRN 429
+ I +++ + + G I+ + C ++F + +N + ++
Sbjct: 199 TPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGKKNSFKARIYKDSKD 258
Query: 430 GKTVATLFGKWDESIHYVIGECSGKGKELESLSEACLLWKRSKPPKYPTRYNFTRFAITL 489
K +++++ + G+ SG K + K +K + Y+ R
Sbjct: 259 SKDK-------EKALYTISGQWSGSSK----------IIKANKKEESRLFYDAARIPAEH 301
Query: 490 NEVTPGLKEKLPPTDSRLRPD-QRCLENGEYEMANSEKLRLEQRQRQARKMQEN---GWK 545
V P L+E+ P + D ++ G++ + K LE+ QR+ RK +E W+
Sbjct: 302 LNVKP-LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQ 360
Query: 546 PRWF 549
RWF
Sbjct: 361 RRWF 364
>pdb|2WSJ|A Chain A, Crystal Structure Of Single Point Mutant Glu71ser
P-Coumaric Acid Decarboxylase
pdb|2WSJ|B Chain B, Crystal Structure Of Single Point Mutant Glu71ser
P-Coumaric Acid Decarboxylase
Length = 178
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 541 ENGWKPRWFAKDRATGTYRYIGGYWEARETGD 572
+NGW+ W+AK+ T YR GG R D
Sbjct: 21 DNGWEYEWYAKNDHTVDYRIHGGMVAGRWVTD 52
>pdb|2W2B|A Chain A, Crystal Structure Of Single Point Mutant Tyr20phe P-
Coumaric Acid Decarboxylase From Lactobacillus
Plantarum: Structural Insights Into The Active Site And
Decarboxylation Catalytic Mechanism
pdb|2W2B|B Chain B, Crystal Structure Of Single Point Mutant Tyr20phe P-
Coumaric Acid Decarboxylase From Lactobacillus
Plantarum: Structural Insights Into The Active Site And
Decarboxylation Catalytic Mechanism
Length = 194
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 541 ENGWKPRWFAKDRATGTYRYIGGYWEARETGD 572
+NGW+ W+AK+ T YR GG R D
Sbjct: 37 DNGWEYEWYAKNDHTVDYRIHGGMVAGRWVTD 68
>pdb|2W2A|A Chain A, Crystal Structure Of P-Coumaric Acid Decarboxylase From
Lactobacillus Plantarum: Structural Insights Into The
Active Site And Decarboxylation Catalytic Mechanism
pdb|2W2A|B Chain B, Crystal Structure Of P-Coumaric Acid Decarboxylase From
Lactobacillus Plantarum: Structural Insights Into The
Active Site And Decarboxylation Catalytic Mechanism
Length = 194
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 541 ENGWKPRWFAKDRATGTYRYIGGYWEARETGD 572
+NGW+ W+AK+ T YR GG R D
Sbjct: 37 DNGWEYEWYAKNDHTVDYRIHGGMVAGRWVTD 68
>pdb|2GC9|A Chain A, Crystal Structure Of P-Coumaric Acid Decarboxylase
(Np_786857.1) From Lactobacillus Plantarum At 1.70 A
Resolution
pdb|2GC9|B Chain B, Crystal Structure Of P-Coumaric Acid Decarboxylase
(Np_786857.1) From Lactobacillus Plantarum At 1.70 A
Resolution
Length = 179
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 541 ENGWKPRWFAKDRATGTYRYIGGYWEARETGD 572
+NGW+ W+AK+ T YR GG R D
Sbjct: 22 DNGWEYEWYAKNDHTVDYRIHGGXVAGRWVTD 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,622,298
Number of Sequences: 62578
Number of extensions: 695121
Number of successful extensions: 1438
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 9
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)