Query 007756
Match_columns 590
No_of_seqs 207 out of 1069
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 100.0 7.9E-87 2.7E-91 719.6 29.7 320 211-554 9-371 (438)
2 2rr3_B OSBP, oxysterol-binding 68.5 4.2 0.00014 30.0 3.2 17 137-153 15-31 (47)
3 2v66_B Nuclear distribution pr 38.0 18 0.00061 31.9 2.7 38 55-92 34-71 (111)
4 2xu6_A MDV1 coiled coil; prote 33.0 24 0.00081 28.8 2.4 42 53-94 18-59 (72)
5 3uux_B Mitochondrial division 29.1 32 0.0011 34.1 3.1 48 52-99 173-220 (242)
6 1gk7_A Vimentin; intermediate 28.9 26 0.0009 25.1 1.8 31 62-92 5-35 (39)
7 1txp_A HnRNP C, heterogeneous 27.7 62 0.0021 21.6 3.3 25 60-84 3-27 (28)
8 2v71_A Nuclear distribution pr 23.9 80 0.0027 30.2 4.8 36 58-93 90-125 (189)
9 2c5i_P Vacuolar protein sortin 19.8 27 0.00094 23.4 0.4 10 315-324 1-10 (29)
10 3mtu_A Tropomyosin alpha-1 cha 18.7 1.9E+02 0.0065 23.3 5.3 44 42-85 2-45 (75)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=100.00 E-value=7.9e-87 Score=719.61 Aligned_cols=320 Identities=23% Similarity=0.363 Sum_probs=282.4
Q ss_pred ccchhHHHHhhhcCC---CCccccccccccCCcChHHHHHhhccchHHHHHHHhcC-------CCCC------HHHHHHH
Q 007756 211 KGVSLWAMIKDNIGK---DLTKICLPVYFNEPLSSLQKCFEELEYSYLIDRAYEWG-------KRGN------TLMRILN 274 (590)
Q Consensus 211 ~~vsLwsilK~~iGk---DLtrIsLPv~f~EP~S~LQr~~edleYs~LLd~Aa~~~-------~~~d------p~eRm~~ 274 (590)
.++|+|+++.++||+ |||+|+|||+||||+|+||+++++|+|++||+.|+... +..| |++||++
T Consensus 9 ~~~s~w~~~lK~i~k~g~DLSkIslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm~~ 88 (438)
T 1zhx_A 9 ASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARMLA 88 (438)
T ss_dssp TTSHHHHHHHHTTTTCCSCGGGSCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHHHH
T ss_pred ccccHHHHHHHHhhhcCCChhhcccCchhcCCccHHHHHHHhhhhHHHHhhhhhcccccccccccCCccccCCHHHHHHH
Confidence 568999866666755 99999999999999999999999999999999988631 1238 9999999
Q ss_pred HHHHHhhcccccc-------CccCCCCCCCCCCeeEEEecC-----CC-EEEEEEecccCCcceeEEEecC--cEEEEEE
Q 007756 275 VAAFAVSGYASTE-------GRICKPFNPLLGETYEADYPD-----KG-LQFFSEKVSHHPMIVACHCQGT--GWKFWGD 339 (590)
Q Consensus 275 V~aFavS~y~~t~-------~r~~KPFNPiLGETfe~~~~d-----~g-~rfiaEQVSHHPPISA~~~eg~--g~~~~g~ 339 (590)
|+||+||+|++.. ++.+|||||||||||+|.|+| .| ++|||||||||||||||||+++ ||.++|+
T Consensus 89 V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~g~ 168 (438)
T 1zhx_A 89 VTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGY 168 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEEEE
T ss_pred HHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCccCCCCCcEEEEEEeccCCCCeeEEEEEcCCCCEEEEEE
Confidence 9999999987532 678999999999999999986 46 8999999999999999999985 8999999
Q ss_pred eeeeEEEEee-EEEEEEceEEEEEecCCceEEecccceeeeecccceeeEeeceeEEEEcCCcceEEEEeeecccccCCC
Q 007756 340 SNLKSKFWGR-SIQLDPVGVLTLEFDDGEVFQWSKVTSSIYNLILGKLYCDHYGTMRIEGNREYSCKLKFKEQSIIDRNP 418 (590)
Q Consensus 340 ~~~ksKF~G~-Si~v~~~G~~~l~f~~gE~Y~w~~pt~~i~nii~G~~~~e~~G~m~I~~~tg~~~~l~Fk~~~~~~~~~ 418 (590)
..+++||||+ ||+|.+.|.++|+|+ ||+|+|++|+++|+|||+|++|+|++|+|.|+|++|++|+|+|+++|||+++.
T Consensus 169 ~~~kskF~G~~Sv~v~~~G~~~l~l~-~E~Y~~t~P~~~v~gIi~G~~~vE~~G~~~I~~~tg~~~~l~F~~kg~f~g~~ 247 (438)
T 1zhx_A 169 NQIKASFTKSLMLTVKQFGHTMLDIK-DESYLVTPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGKK 247 (438)
T ss_dssp EEEEEEECTTCCEEEEEECCEEEEET-TEEEEEECCCEEEECTTTTCCEEEECSEEEEEETTSCEEEEEEECSSSSCSSS
T ss_pred eeeEEEEcCceEEEEEcceEEEEEEC-CcEEEEecCcEEEEEEEecceeEecCCeEEEEcCCCCEEEEEEcCCCCcCCCc
Confidence 9999999999 999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcC------CCcEEEEEeeeecceEEEEecccCCCCcccccCccceEEeccCCCCCCCCccccccceeecccC
Q 007756 419 HQVHGIVQDR------NGKTVATLFGKWDESIHYVIGECSGKGKELESLSEACLLWKRSKPPKYPTRYNFTRFAITLNEV 492 (590)
Q Consensus 419 ~~V~G~V~d~------~gk~~~~l~GkWd~~l~~~~~~~~~k~k~~~~~~~~~~lW~~~~~p~~~~~y~~t~fai~LNel 492 (590)
|.|+|.|++. +|+++++|.|+|++.|++...... ....++|+.++.+..+ + .+
T Consensus 248 n~v~G~I~~~~~~~~~~~~~l~~i~G~W~~~l~i~~~~~~---------~~~~~~~~~~~~~~~~-------~-----~v 306 (438)
T 1zhx_A 248 NSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKK---------EESRLFYDAARIPAEH-------L-----NV 306 (438)
T ss_dssp SEEEEEEESSTTGGGCGGGCSEEEEEETTSEEEEEETTCG---------GGCEEEEETTTSCCCC-------C-----BC
T ss_pred cEEEEEEEcCCcccCCCCcEEEEEEEEEcceEEEEeCCCC---------ccceEEeccCCCCCcc-------c-----cC
Confidence 9999999984 678899999999999998654320 1247899998765421 1 12
Q ss_pred CccccCCCCCCCCCc--hhhhhHHHcCCHHHHHHHHHHHHHHHHHHHHhcc---CCCCCceeEEcCC
Q 007756 493 TPGLKEKLPPTDSRL--RPDQRCLENGEYEMANSEKLRLEQRQRQARKMQE---NGWKPRWFAKDRA 554 (590)
Q Consensus 493 ~p~~~e~l~PTDSRl--RpD~raLe~Gd~d~A~~eK~rLEekQR~~RK~re---~~w~PrwF~~~~~ 554 (590)
.| .+.++|||||+ |||+|||++||++.|+++|.+|||+||++||+|+ ..|+||||++..+
T Consensus 307 ~p--~e~q~ptdSR~~Wr~d~~ale~Gd~d~A~~eK~rLEe~QR~~rk~re~~g~~w~Pr~F~~~~~ 371 (438)
T 1zhx_A 307 KP--LEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDY 371 (438)
T ss_dssp CC--GGGCCTTBHHHHTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSEEEEEC
T ss_pred CC--hhhCCCcccchhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccceEEECCc
Confidence 33 24578999996 8999999999999999999999999999988765 4799999998644
No 2
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=68.53 E-value=4.2 Score=29.99 Aligned_cols=17 Identities=35% Similarity=0.839 Sum_probs=13.0
Q ss_pred cccCCcccccccccccC
Q 007756 137 DEDENTFFDTRDFLSSS 153 (590)
Q Consensus 137 ~~~~~~~~d~~~~~~~~ 153 (590)
+|+|.+|||+-+|++.+
T Consensus 15 EDed~EfFDA~efITv~ 31 (47)
T 2rr3_B 15 EDDENEFFDAPEIITMP 31 (47)
T ss_dssp CCCSSCCBCCCSSCSSC
T ss_pred cccccccccccceeEcc
Confidence 34467899998888766
No 3
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=37.99 E-value=18 Score=31.88 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=34.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccc
Q 007756 55 RNEFAPLQSQLLLLKQKQWLLIDTLRQLETEKVDLENT 92 (590)
Q Consensus 55 ~~ef~~~~~q~~~~~~~~~~l~~~lr~le~~~~~~~~~ 92 (590)
.+.-+.||..+..+.+.+-.|.-.||.||..+.|||+.
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 34577899999999999999999999999999999874
No 4
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=33.01 E-value=24 Score=28.77 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=36.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccc
Q 007756 53 IMRNEFAPLQSQLLLLKQKQWLLIDTLRQLETEKVDLENTVV 94 (590)
Q Consensus 53 i~~~ef~~~~~q~~~~~~~~~~l~~~lr~le~~~~~~~~~~v 94 (590)
+-.||..++-.++..|+..|-+++++|-.||-+...||+-++
T Consensus 18 ma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~ 59 (72)
T 2xu6_A 18 STMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLK 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346899999999999999999999999999988888887654
No 5
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=29.09 E-value=32 Score=34.12 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=40.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccchhhh
Q 007756 52 QIMRNEFAPLQSQLLLLKQKQWLLIDTLRQLETEKVDLENTVVDESQR 99 (590)
Q Consensus 52 ~i~~~ef~~~~~q~~~~~~~~~~l~~~lr~le~~~~~~~~~~v~e~~~ 99 (590)
.+..+|..++-.++..|+..|..++++|-.||.+..+||+-+..--.|
T Consensus 173 ~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~R 220 (242)
T 3uux_B 173 NSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDR 220 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999998998877543333
No 6
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=28.87 E-value=26 Score=25.11 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccc
Q 007756 62 QSQLLLLKQKQWLLIDTLRQLETEKVDLENT 92 (590)
Q Consensus 62 ~~q~~~~~~~~~~l~~~lr~le~~~~~~~~~ 92 (590)
+.+|+-|--+-.+.||..|.||+++..||.-
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~ 35 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAE 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777778888899999999988777653
No 7
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=27.74 E-value=62 Score=21.57 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 007756 60 PLQSQLLLLKQKQWLLIDTLRQLET 84 (590)
Q Consensus 60 ~~~~q~~~~~~~~~~l~~~lr~le~ 84 (590)
.+.+.|-+.+++-=+||++|.+.|.
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~~~ 27 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3556677778888889999987664
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.94 E-value=80 Score=30.19 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 007756 58 FAPLQSQLLLLKQKQWLLIDTLRQLETEKVDLENTV 93 (590)
Q Consensus 58 f~~~~~q~~~~~~~~~~l~~~lr~le~~~~~~~~~~ 93 (590)
-+.||.++..+...+-.|--.||.||..+.+||+..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 778899999999999999999999999999998754
No 9
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=19.78 E-value=27 Score=23.39 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=2.8
Q ss_pred EEecccCCcc
Q 007756 315 SEKVSHHPMI 324 (590)
Q Consensus 315 aEQVSHHPPI 324 (590)
|||+||--|+
T Consensus 1 aeqItHKK~l 10 (29)
T 2c5i_P 1 AEQISHKKSL 10 (29)
T ss_dssp ------CCCC
T ss_pred CccccccCCc
Confidence 6888888765
No 10
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=18.71 E-value=1.9e+02 Score=23.34 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=36.7
Q ss_pred cChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007756 42 VREEVIQESEQIMRNEFAPLQSQLLLLKQKQWLLIDTLRQLETE 85 (590)
Q Consensus 42 ~~e~~i~~ce~i~~~ef~~~~~q~~~~~~~~~~l~~~lr~le~~ 85 (590)
.+-++||-=-|.|..|...+..++..+.++|=.-++.||+.|..
T Consensus 2 ~~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l 45 (75)
T 3mtu_A 2 ASMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELI 45 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456777778899999999999999999998889999988754
Done!