Query 007757
Match_columns 590
No_of_seqs 1185 out of 2438
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 14:55:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0282 mRNA splicing factor [ 100.0 1.2E-86 2.6E-91 658.0 28.4 461 67-590 41-503 (503)
2 KOG0271 Notchless-like WD40 re 100.0 1.4E-44 3.1E-49 348.7 25.8 324 242-589 113-478 (480)
3 KOG0271 Notchless-like WD40 re 100.0 4.2E-44 9.2E-49 345.5 25.7 293 289-590 105-437 (480)
4 KOG0286 G-protein beta subunit 100.0 2.7E-40 5.9E-45 309.7 35.6 292 290-590 46-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 2E-41 4.3E-46 331.3 24.0 286 293-590 169-458 (459)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-38 4.7E-43 310.0 24.6 282 243-547 174-458 (459)
7 KOG0265 U5 snRNP-specific prot 100.0 1.4E-37 3E-42 292.6 27.3 293 291-588 39-334 (338)
8 KOG0285 Pleiotropic regulator 100.0 6E-37 1.3E-41 293.8 26.5 294 282-589 134-436 (460)
9 KOG0293 WD40 repeat-containing 100.0 9.4E-37 2E-41 297.2 24.1 295 285-589 210-510 (519)
10 KOG0279 G protein beta subunit 100.0 2.3E-35 5E-40 275.1 31.1 289 290-590 6-311 (315)
11 KOG0295 WD40 repeat-containing 100.0 2E-36 4.3E-41 291.3 23.4 289 290-590 99-404 (406)
12 KOG0315 G-protein beta subunit 100.0 7E-35 1.5E-39 267.6 29.1 270 312-590 10-286 (311)
13 cd00200 WD40 WD40 domain, foun 100.0 7.1E-34 1.5E-38 282.7 38.0 287 292-590 2-289 (289)
14 KOG0318 WD40 repeat stress pro 100.0 3.1E-34 6.7E-39 287.5 34.8 319 250-590 153-558 (603)
15 KOG0273 Beta-transducin family 100.0 1.4E-34 3E-39 286.7 29.9 313 258-590 193-521 (524)
16 KOG0315 G-protein beta subunit 100.0 4.1E-34 8.9E-39 262.6 30.1 293 255-570 9-309 (311)
17 KOG0316 Conserved WD40 repeat- 100.0 2.6E-34 5.7E-39 261.8 27.5 288 287-589 5-296 (307)
18 KOG0279 G protein beta subunit 100.0 1E-33 2.2E-38 264.2 28.4 280 256-549 28-313 (315)
19 KOG0296 Angio-associated migra 100.0 5.5E-33 1.2E-37 267.8 33.3 287 291-590 56-396 (399)
20 KOG0266 WD40 repeat-containing 100.0 5.2E-33 1.1E-37 298.1 33.3 291 292-590 151-452 (456)
21 KOG0284 Polyadenylation factor 100.0 1.6E-34 3.5E-39 281.6 18.6 292 287-590 83-378 (464)
22 KOG0291 WD40-repeat-containing 100.0 4.2E-32 9E-37 282.1 33.8 270 283-557 334-620 (893)
23 KOG0319 WD40-repeat-containing 100.0 8.3E-33 1.8E-37 287.2 26.4 329 242-590 103-575 (775)
24 KOG0263 Transcription initiati 100.0 1.6E-32 3.4E-37 288.2 28.6 285 284-579 363-702 (707)
25 KOG0273 Beta-transducin family 100.0 4E-32 8.6E-37 269.3 29.4 293 285-590 165-480 (524)
26 KOG0291 WD40-repeat-containing 100.0 2.9E-31 6.3E-36 275.8 34.7 299 285-590 131-506 (893)
27 KOG0281 Beta-TrCP (transducin 100.0 1.9E-33 4.1E-38 268.7 14.5 268 298-590 196-475 (499)
28 KOG0643 Translation initiation 100.0 9.4E-32 2E-36 249.4 23.9 284 294-589 5-314 (327)
29 KOG0263 Transcription initiati 100.0 3.3E-32 7.1E-37 285.8 23.3 247 334-590 369-647 (707)
30 KOG0286 G-protein beta subunit 100.0 7.3E-31 1.6E-35 246.4 29.6 256 284-547 82-343 (343)
31 PLN00181 protein SPA1-RELATED; 100.0 2E-30 4.3E-35 297.7 39.7 286 295-590 479-791 (793)
32 KOG0645 WD40 repeat protein [G 100.0 2.5E-30 5.5E-35 240.6 32.2 286 290-590 5-309 (312)
33 KOG0278 Serine/threonine kinas 100.0 3.9E-32 8.4E-37 249.6 18.3 283 293-589 8-294 (334)
34 KOG0275 Conserved WD40 repeat- 100.0 2.2E-32 4.8E-37 259.1 15.4 295 287-590 200-507 (508)
35 KOG0313 Microtubule binding pr 100.0 1.1E-30 2.4E-35 252.9 26.0 288 288-589 95-415 (423)
36 KOG0319 WD40-repeat-containing 100.0 1E-30 2.2E-35 271.8 26.1 290 289-589 313-616 (775)
37 KOG0295 WD40 repeat-containing 100.0 9.7E-31 2.1E-35 252.1 22.3 281 246-548 110-405 (406)
38 KOG0306 WD40-repeat-containing 100.0 7E-30 1.5E-34 265.5 28.0 317 253-590 74-620 (888)
39 KOG0288 WD40 repeat protein Ti 100.0 8.1E-31 1.8E-35 256.3 18.1 294 285-589 161-458 (459)
40 KOG0292 Vesicle coat complex C 100.0 1.1E-29 2.3E-34 267.6 27.7 284 294-586 4-316 (1202)
41 KOG0276 Vesicle coat complex C 100.0 1.6E-29 3.5E-34 257.8 28.0 286 291-588 5-295 (794)
42 KOG1407 WD40 repeat protein [F 100.0 3.8E-29 8.2E-34 231.5 26.4 283 293-589 14-308 (313)
43 KOG0772 Uncharacterized conser 100.0 3.2E-29 7E-34 250.8 26.5 298 286-589 154-484 (641)
44 KOG0276 Vesicle coat complex C 100.0 7.6E-30 1.7E-34 260.2 21.9 245 337-590 7-255 (794)
45 KOG0640 mRNA cleavage stimulat 100.0 2E-29 4.3E-34 238.1 22.0 294 291-589 104-423 (430)
46 KOG0285 Pleiotropic regulator 100.0 1.1E-29 2.4E-34 243.9 20.2 247 332-590 140-387 (460)
47 KOG0318 WD40 repeat stress pro 100.0 7.7E-28 1.7E-32 241.7 33.0 294 288-590 48-348 (603)
48 KOG0266 WD40 repeat-containing 100.0 2.1E-28 4.6E-33 262.5 30.7 281 250-549 165-454 (456)
49 KOG0284 Polyadenylation factor 100.0 1.9E-30 4.2E-35 253.2 13.0 254 284-548 123-379 (464)
50 KOG0292 Vesicle coat complex C 100.0 2.3E-28 5E-33 257.6 28.9 317 246-585 11-389 (1202)
51 KOG0265 U5 snRNP-specific prot 100.0 1.3E-28 2.9E-33 232.1 24.3 283 241-546 44-335 (338)
52 KOG0283 WD40 repeat-containing 100.0 9.7E-29 2.1E-33 261.8 25.8 253 290-550 257-577 (712)
53 KOG0268 Sof1-like rRNA process 100.0 7.1E-30 1.5E-34 245.9 15.3 288 286-589 53-342 (433)
54 KOG1446 Histone H3 (Lys4) meth 100.0 4.2E-27 9.2E-32 224.2 33.5 286 291-589 6-300 (311)
55 KOG0645 WD40 repeat protein [G 100.0 1.1E-27 2.3E-32 223.1 28.7 283 246-549 16-311 (312)
56 PLN00181 protein SPA1-RELATED; 100.0 2.7E-27 5.9E-32 271.9 37.1 288 250-548 489-792 (793)
57 KOG0316 Conserved WD40 repeat- 100.0 1.5E-28 3.3E-33 224.2 21.1 243 334-590 8-255 (307)
58 cd00200 WD40 WD40 domain, foun 100.0 3.5E-27 7.6E-32 234.5 33.0 279 245-547 10-289 (289)
59 KOG0274 Cdc4 and related F-box 100.0 2.1E-27 4.6E-32 254.7 31.6 277 293-590 201-480 (537)
60 KOG0277 Peroxisomal targeting 100.0 5.2E-28 1.1E-32 223.1 22.3 281 303-590 12-307 (311)
61 KOG0305 Anaphase promoting com 100.0 2E-27 4.3E-32 246.2 28.6 273 303-590 181-459 (484)
62 KOG0647 mRNA export protein (c 100.0 2.3E-27 4.9E-32 224.0 26.4 281 297-583 25-315 (347)
63 KOG0299 U3 snoRNP-associated p 100.0 1.6E-27 3.4E-32 236.4 24.8 309 262-585 111-449 (479)
64 KOG0281 Beta-TrCP (transducin 100.0 8.8E-29 1.9E-33 236.8 14.3 253 284-554 222-482 (499)
65 KOG0306 WD40-repeat-containing 100.0 8.6E-27 1.9E-31 242.6 28.8 282 294-590 368-662 (888)
66 KOG0277 Peroxisomal targeting 100.0 2.1E-27 4.5E-32 219.2 19.5 268 266-548 36-308 (311)
67 KOG4283 Transcription-coupled 100.0 2.1E-26 4.7E-31 216.3 25.9 292 296-589 40-362 (397)
68 PTZ00421 coronin; Provisional 100.0 1.3E-25 2.9E-30 240.4 35.3 264 300-571 21-313 (493)
69 KOG0310 Conserved WD40 repeat- 100.0 1.6E-26 3.5E-31 230.8 25.9 277 299-588 26-305 (487)
70 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-25 3.1E-30 213.7 29.8 249 334-590 5-260 (311)
71 KOG0288 WD40 repeat protein Ti 100.0 3.6E-27 7.8E-32 230.8 18.9 252 284-546 202-458 (459)
72 KOG0641 WD40 repeat protein [G 99.9 1.7E-24 3.6E-29 196.5 32.7 290 291-589 25-346 (350)
73 KOG0289 mRNA splicing factor [ 99.9 1.5E-25 3.3E-30 220.5 27.9 256 285-548 247-505 (506)
74 KOG2055 WD40 repeat protein [G 99.9 7E-25 1.5E-29 217.5 31.5 283 299-589 213-509 (514)
75 KOG0274 Cdc4 and related F-box 99.9 1.6E-25 3.5E-30 240.2 28.0 261 282-561 231-494 (537)
76 KOG1273 WD40 repeat protein [G 99.9 2.3E-25 4.9E-30 211.3 25.6 296 287-590 13-320 (405)
77 KOG0973 Histone transcription 99.9 1.4E-25 2.9E-30 243.6 26.6 285 295-589 8-352 (942)
78 KOG0300 WD40 repeat-containing 99.9 9.7E-26 2.1E-30 213.6 21.4 288 241-551 145-478 (481)
79 PTZ00420 coronin; Provisional 99.9 1.5E-24 3.3E-29 233.5 33.3 238 287-531 62-318 (568)
80 KOG0282 mRNA splicing factor [ 99.9 2.5E-26 5.5E-31 229.1 17.3 283 242-547 212-503 (503)
81 KOG0300 WD40 repeat-containing 99.9 1.1E-25 2.5E-30 213.2 20.5 293 288-590 137-474 (481)
82 PTZ00421 coronin; Provisional 99.9 4.7E-24 1E-28 228.5 34.7 230 294-530 70-314 (493)
83 KOG0296 Angio-associated migra 99.9 1.2E-24 2.7E-29 210.2 26.8 278 246-549 66-398 (399)
84 PTZ00420 coronin; Provisional 99.9 5.7E-24 1.2E-28 229.0 34.8 247 318-572 50-317 (568)
85 KOG0289 mRNA splicing factor [ 99.9 1E-24 2.3E-29 214.7 26.1 280 299-589 219-503 (506)
86 KOG0643 Translation initiation 99.9 2.3E-24 5.1E-29 200.4 26.6 285 242-549 8-317 (327)
87 KOG2096 WD40 repeat protein [G 99.9 1.8E-24 3.9E-29 205.5 26.3 298 285-589 72-399 (420)
88 KOG1407 WD40 repeat protein [F 99.9 2.5E-24 5.4E-29 199.6 25.9 271 247-540 23-293 (313)
89 KOG0294 WD40 repeat-containing 99.9 2.8E-24 6E-29 204.2 26.2 263 315-590 4-279 (362)
90 KOG1036 Mitotic spindle checkp 99.9 2.5E-24 5.5E-29 204.3 25.7 273 299-582 13-294 (323)
91 KOG1408 WD40 repeat protein [F 99.9 3.4E-25 7.3E-30 229.0 21.4 294 293-589 363-710 (1080)
92 KOG0308 Conserved WD40 repeat- 99.9 1.9E-25 4E-30 229.6 19.1 314 258-590 39-391 (735)
93 KOG0293 WD40 repeat-containing 99.9 3.2E-25 6.9E-30 216.9 19.3 280 248-550 228-514 (519)
94 KOG0310 Conserved WD40 repeat- 99.9 7.1E-25 1.5E-29 219.2 21.7 247 291-548 60-308 (487)
95 KOG0301 Phospholipase A2-activ 99.9 3.1E-24 6.6E-29 222.3 26.9 278 289-589 4-285 (745)
96 KOG0268 Sof1-like rRNA process 99.9 3.2E-25 7E-30 213.9 17.6 283 243-553 65-349 (433)
97 KOG4328 WD40 protein [Function 99.9 2.7E-24 6E-29 213.2 24.3 301 287-589 174-492 (498)
98 KOG0639 Transducin-like enhanc 99.9 1E-24 2.3E-29 217.7 20.4 278 297-589 417-701 (705)
99 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9E-23 2E-27 206.8 34.9 269 313-590 2-277 (300)
100 KOG1332 Vesicle coat complex C 99.9 1.2E-24 2.6E-29 199.9 18.7 249 296-548 8-285 (299)
101 KOG0308 Conserved WD40 repeat- 99.9 5.3E-25 1.1E-29 226.3 18.2 285 297-589 19-324 (735)
102 KOG1539 WD repeat protein [Gen 99.9 3.3E-23 7.2E-28 218.4 31.9 296 283-589 186-645 (910)
103 KOG0278 Serine/threonine kinas 99.9 4E-25 8.6E-30 203.5 15.0 243 242-504 57-299 (334)
104 KOG0294 WD40 repeat-containing 99.9 1.9E-23 4.1E-28 198.6 26.6 267 285-569 29-305 (362)
105 KOG0313 Microtubule binding pr 99.9 4.1E-24 9E-29 207.5 21.8 239 341-590 103-374 (423)
106 KOG0321 WD40 repeat-containing 99.9 3.7E-24 8.1E-29 219.7 22.5 278 310-590 62-389 (720)
107 KOG0264 Nucleosome remodeling 99.9 4.7E-24 1E-28 211.9 21.8 254 296-590 121-402 (422)
108 KOG0646 WD40 repeat protein [G 99.9 2.4E-24 5.3E-29 214.3 19.6 250 284-572 66-330 (476)
109 KOG0305 Anaphase promoting com 99.9 1.1E-23 2.3E-28 218.5 24.9 253 285-551 203-463 (484)
110 KOG1274 WD40 repeat protein [G 99.9 3.5E-23 7.7E-28 220.6 29.3 263 297-574 11-283 (933)
111 KOG0283 WD40 repeat-containing 99.9 4.4E-24 9.5E-29 226.7 22.2 254 242-502 265-576 (712)
112 KOG0772 Uncharacterized conser 99.9 3.4E-24 7.4E-29 214.9 19.3 252 335-590 159-443 (641)
113 KOG0299 U3 snoRNP-associated p 99.9 1.9E-23 4E-28 207.6 22.1 243 286-538 191-444 (479)
114 KOG0641 WD40 repeat protein [G 99.9 2E-22 4.3E-27 183.1 26.9 292 250-549 38-349 (350)
115 KOG0973 Histone transcription 99.9 8.1E-23 1.8E-27 222.1 27.7 290 251-550 20-356 (942)
116 KOG0275 Conserved WD40 repeat- 99.9 6.2E-24 1.3E-28 201.9 16.3 289 243-547 212-507 (508)
117 KOG0650 WD40 repeat nucleolar 99.9 5E-23 1.1E-27 209.8 23.9 292 285-589 386-732 (733)
118 KOG0647 mRNA export protein (c 99.9 1.2E-22 2.7E-27 192.0 24.0 238 341-590 25-279 (347)
119 KOG1036 Mitotic spindle checkp 99.9 2.5E-22 5.4E-27 190.8 24.0 236 342-590 12-260 (323)
120 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.5E-21 1.4E-25 193.2 35.9 267 290-571 22-300 (300)
121 KOG0640 mRNA cleavage stimulat 99.9 1E-22 2.2E-27 192.9 20.6 294 246-548 114-425 (430)
122 KOG1539 WD repeat protein [Gen 99.9 1.2E-21 2.5E-26 206.9 30.8 286 299-590 159-604 (910)
123 KOG1063 RNA polymerase II elon 99.9 7.3E-22 1.6E-26 204.7 26.4 293 288-589 180-645 (764)
124 KOG0269 WD40 repeat-containing 99.9 8.9E-23 1.9E-27 213.8 18.7 292 285-587 27-335 (839)
125 KOG0646 WD40 repeat protein [G 99.9 6E-22 1.3E-26 197.3 23.1 260 318-590 13-305 (476)
126 KOG2445 Nuclear pore complex c 99.9 8.2E-21 1.8E-25 180.1 26.7 254 296-589 10-315 (361)
127 KOG2055 WD40 repeat protein [G 99.9 1.2E-21 2.7E-26 194.6 21.4 286 245-549 214-512 (514)
128 KOG0269 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 213.2 14.0 245 301-551 89-342 (839)
129 KOG2106 Uncharacterized conser 99.9 1.8E-20 3.9E-25 187.9 26.7 290 291-590 279-624 (626)
130 KOG0301 Phospholipase A2-activ 99.9 3.5E-21 7.6E-26 199.8 22.0 240 333-590 4-247 (745)
131 KOG2048 WD40 repeat protein [G 99.9 7.3E-20 1.6E-24 189.8 31.6 278 297-588 23-315 (691)
132 KOG1274 WD40 repeat protein [G 99.9 2E-20 4.2E-25 199.8 26.6 243 341-590 11-260 (933)
133 KOG2106 Uncharacterized conser 99.9 9.6E-20 2.1E-24 182.7 29.6 287 285-589 140-474 (626)
134 KOG1332 Vesicle coat complex C 99.9 4.3E-21 9.4E-26 176.6 18.4 246 339-589 7-283 (299)
135 KOG1408 WD40 repeat protein [F 99.9 2E-20 4.4E-25 193.8 23.6 284 302-590 327-669 (1080)
136 KOG1063 RNA polymerase II elon 99.9 2.8E-20 6.1E-25 193.0 24.5 293 290-589 45-388 (764)
137 KOG0267 Microtubule severing p 99.9 3.8E-22 8.3E-27 207.5 10.8 237 294-541 23-260 (825)
138 KOG0264 Nucleosome remodeling 99.9 1.7E-20 3.7E-25 186.7 21.6 212 290-503 168-405 (422)
139 KOG1034 Transcriptional repres 99.9 3.1E-20 6.8E-25 177.6 21.9 291 294-590 33-381 (385)
140 KOG0267 Microtubule severing p 99.9 4.9E-22 1.1E-26 206.7 10.0 254 312-582 4-258 (825)
141 KOG2048 WD40 repeat protein [G 99.9 2.3E-19 5E-24 186.1 27.9 242 342-589 24-272 (691)
142 KOG0302 Ribosome Assembly prot 99.9 5E-20 1.1E-24 179.1 19.9 249 294-585 146-432 (440)
143 KOG4378 Nuclear protein COP1 [ 99.8 5.3E-20 1.2E-24 184.0 20.4 260 301-571 36-303 (673)
144 KOG2919 Guanine nucleotide-bin 99.8 2.6E-19 5.7E-24 170.9 23.7 271 303-582 53-360 (406)
145 KOG0322 G-protein beta subunit 99.8 2E-20 4.2E-25 174.1 15.3 298 287-590 2-321 (323)
146 KOG2096 WD40 repeat protein [G 99.8 3.7E-19 8.1E-24 169.5 23.0 245 337-589 80-357 (420)
147 KOG0270 WD40 repeat-containing 99.8 2.1E-19 4.6E-24 178.2 21.7 240 346-590 176-447 (463)
148 KOG0639 Transducin-like enhanc 99.8 4.8E-20 1E-24 184.5 16.9 236 341-589 417-660 (705)
149 KOG0270 WD40 repeat-containing 99.8 1E-19 2.2E-24 180.5 18.9 245 303-554 177-454 (463)
150 KOG4227 WD40 repeat protein [G 99.8 3.7E-19 7.9E-24 173.3 21.9 292 292-589 49-384 (609)
151 KOG0650 WD40 repeat nucleolar 99.8 2E-19 4.4E-24 183.7 21.0 246 334-589 391-677 (733)
152 KOG1538 Uncharacterized conser 99.8 3.8E-19 8.3E-24 183.2 22.6 272 301-590 14-291 (1081)
153 KOG1334 WD40 repeat protein [G 99.8 3.1E-20 6.7E-25 185.8 14.2 297 289-589 132-463 (559)
154 KOG1240 Protein kinase contain 99.8 1.2E-18 2.6E-23 190.7 26.9 304 287-590 1036-1431(1431)
155 KOG0302 Ribosome Assembly prot 99.8 2.2E-19 4.7E-24 174.6 17.9 221 339-590 147-376 (440)
156 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-16 2.8E-21 166.9 40.2 304 262-590 130-440 (466)
157 KOG1188 WD40 repeat protein [G 99.8 3E-19 6.5E-24 171.9 18.2 272 313-589 41-343 (376)
158 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-16 2.9E-21 166.8 37.9 287 294-590 60-357 (466)
159 KOG0307 Vesicle coat complex C 99.8 1E-19 2.2E-24 198.9 14.1 279 304-589 11-324 (1049)
160 KOG4378 Nuclear protein COP1 [ 99.8 5.9E-19 1.3E-23 176.6 17.7 220 302-531 82-305 (673)
161 KOG1034 Transcriptional repres 99.8 1.9E-19 4.1E-24 172.3 13.5 262 255-549 104-383 (385)
162 KOG0642 Cell-cycle nuclear pro 99.8 4E-19 8.8E-24 181.0 16.4 297 257-590 243-559 (577)
163 KOG0321 WD40 repeat-containing 99.8 1.3E-18 2.7E-23 179.3 19.7 253 292-551 93-393 (720)
164 KOG1009 Chromatin assembly com 99.8 7.4E-18 1.6E-22 165.6 22.9 281 299-587 13-367 (434)
165 KOG4283 Transcription-coupled 99.8 8.9E-18 1.9E-22 158.6 21.3 209 340-552 40-279 (397)
166 KOG0307 Vesicle coat complex C 99.8 3.4E-19 7.5E-24 194.8 12.5 248 300-552 65-330 (1049)
167 KOG0303 Actin-binding protein 99.8 6E-18 1.3E-22 165.5 19.1 208 294-504 76-296 (472)
168 KOG0649 WD40 repeat protein [G 99.8 1.2E-16 2.6E-21 147.3 25.1 274 301-589 12-313 (325)
169 KOG1310 WD40 repeat protein [G 99.8 2E-17 4.4E-22 167.6 21.0 209 292-503 43-304 (758)
170 KOG1517 Guanine nucleotide bin 99.8 7.3E-17 1.6E-21 174.3 26.2 249 300-551 1110-1383(1387)
171 KOG1517 Guanine nucleotide bin 99.8 3.5E-17 7.6E-22 176.8 23.5 286 297-589 1062-1378(1387)
172 KOG1007 WD repeat protein TSSC 99.8 5.9E-17 1.3E-21 152.7 21.4 259 321-588 39-357 (370)
173 KOG1445 Tumor-specific antigen 99.8 3.6E-17 7.9E-22 167.9 21.2 152 258-418 94-249 (1012)
174 KOG1009 Chromatin assembly com 99.8 5.5E-17 1.2E-21 159.5 21.5 283 258-554 28-377 (434)
175 KOG4328 WD40 protein [Function 99.8 3.1E-17 6.8E-22 163.3 20.0 253 291-549 226-495 (498)
176 KOG1273 WD40 repeat protein [G 99.8 4.2E-17 9.2E-22 155.4 20.0 203 380-590 20-224 (405)
177 PRK11028 6-phosphogluconolacto 99.8 1.1E-15 2.3E-20 158.2 32.2 271 314-590 4-302 (330)
178 KOG2445 Nuclear pore complex c 99.8 1.5E-16 3.1E-21 151.5 22.4 234 259-502 28-318 (361)
179 KOG1963 WD40 repeat protein [G 99.7 9.3E-16 2E-20 164.2 27.8 287 297-590 203-536 (792)
180 KOG1587 Cytoplasmic dynein int 99.7 2.6E-16 5.5E-21 168.2 23.0 246 299-550 242-517 (555)
181 KOG1587 Cytoplasmic dynein int 99.7 1.1E-15 2.4E-20 163.4 27.5 262 321-590 221-514 (555)
182 KOG0290 Conserved WD40 repeat- 99.7 2.8E-15 6E-20 141.7 25.5 315 258-583 7-357 (364)
183 KOG0642 Cell-cycle nuclear pro 99.7 8.9E-17 1.9E-21 164.1 15.6 249 248-506 298-565 (577)
184 KOG0644 Uncharacterized conser 99.7 3.6E-18 7.8E-23 180.3 5.5 240 289-590 180-424 (1113)
185 PRK01742 tolB translocation pr 99.7 6.1E-16 1.3E-20 165.4 22.4 234 321-571 183-425 (429)
186 PRK11028 6-phosphogluconolacto 99.7 1.6E-14 3.4E-19 149.4 31.6 251 291-549 27-304 (330)
187 KOG0303 Actin-binding protein 99.7 6.5E-16 1.4E-20 151.4 19.7 210 338-553 76-298 (472)
188 KOG2919 Guanine nucleotide-bin 99.7 4.9E-15 1.1E-19 141.9 24.1 277 254-541 60-362 (406)
189 KOG2110 Uncharacterized conser 99.7 4.9E-14 1.1E-18 137.6 30.3 236 299-549 5-248 (391)
190 KOG0771 Prolactin regulatory e 99.7 4.6E-15 1E-19 147.1 23.2 196 388-588 148-350 (398)
191 KOG1538 Uncharacterized conser 99.7 1.2E-15 2.7E-20 157.6 18.3 243 289-549 43-293 (1081)
192 KOG1007 WD repeat protein TSSC 99.7 2.1E-15 4.5E-20 142.4 17.6 215 284-502 107-361 (370)
193 KOG1523 Actin-related protein 99.7 7.7E-15 1.7E-19 140.6 21.7 247 293-583 4-269 (361)
194 KOG0771 Prolactin regulatory e 99.7 6.5E-16 1.4E-20 153.1 14.7 198 303-503 148-355 (398)
195 KOG1524 WD40 repeat-containing 99.7 1.6E-15 3.4E-20 153.6 15.8 208 312-546 75-283 (737)
196 KOG1188 WD40 repeat protein [G 99.6 7.1E-15 1.5E-19 142.0 17.1 256 289-548 60-345 (376)
197 KOG0290 Conserved WD40 repeat- 99.6 2.3E-14 5.1E-19 135.5 19.3 240 297-540 94-357 (364)
198 PRK03629 tolB translocation pr 99.6 2.4E-13 5.1E-18 145.3 29.5 235 322-571 179-427 (429)
199 KOG0322 G-protein beta subunit 99.6 4.6E-15 1E-19 138.5 13.5 276 260-548 18-322 (323)
200 KOG2321 WD40 repeat protein [G 99.6 1E-13 2.2E-18 141.9 24.0 277 297-588 49-339 (703)
201 KOG2110 Uncharacterized conser 99.6 1.7E-12 3.7E-17 126.9 30.7 251 302-560 49-343 (391)
202 KOG4227 WD40 repeat protein [G 99.6 7.7E-14 1.7E-18 136.5 21.0 297 239-548 51-386 (609)
203 KOG1963 WD40 repeat protein [G 99.6 1.3E-13 2.8E-18 147.9 24.6 277 303-588 20-318 (792)
204 PF02239 Cytochrom_D1: Cytochr 99.6 1E-12 2.3E-17 136.6 31.0 276 312-590 5-345 (369)
205 KOG1272 WD40-repeat-containing 99.6 4.4E-15 9.6E-20 148.3 12.3 265 299-581 129-398 (545)
206 KOG1445 Tumor-specific antigen 99.6 1.2E-14 2.5E-19 149.7 13.4 232 318-553 599-848 (1012)
207 KOG1310 WD40 repeat protein [G 99.6 2.4E-14 5.3E-19 145.5 15.0 218 337-555 44-309 (758)
208 PRK04922 tolB translocation pr 99.6 5.6E-13 1.2E-17 142.9 26.4 235 322-571 184-432 (433)
209 KOG1240 Protein kinase contain 99.6 2.3E-13 5E-18 149.9 23.4 254 327-590 1034-1332(1431)
210 KOG2111 Uncharacterized conser 99.6 4.8E-12 1E-16 121.6 28.8 271 302-587 8-317 (346)
211 KOG2394 WD40 protein DMR-N9 [G 99.6 2.2E-13 4.7E-18 138.5 20.8 216 348-570 128-383 (636)
212 PRK02889 tolB translocation pr 99.6 8.7E-13 1.9E-17 141.1 26.2 235 322-571 176-424 (427)
213 KOG3881 Uncharacterized conser 99.6 3.7E-13 8.1E-18 132.3 20.7 263 299-571 55-341 (412)
214 PRK05137 tolB translocation pr 99.6 3E-12 6.5E-17 137.4 29.6 234 322-571 182-432 (435)
215 KOG4497 Uncharacterized conser 99.5 1.9E-13 4.1E-18 131.4 16.9 273 300-589 49-388 (447)
216 KOG2139 WD40 repeat protein [G 99.5 4.8E-12 1E-16 123.3 25.7 281 301-589 100-428 (445)
217 KOG2111 Uncharacterized conser 99.5 5.1E-12 1.1E-16 121.4 25.4 178 322-504 75-258 (346)
218 KOG1524 WD40 repeat-containing 99.5 5E-13 1.1E-17 135.7 18.8 262 297-588 12-282 (737)
219 KOG2139 WD40 repeat protein [G 99.5 3.3E-12 7.2E-17 124.4 23.1 242 299-548 140-430 (445)
220 KOG0644 Uncharacterized conser 99.5 2E-14 4.3E-19 152.3 8.5 232 265-504 199-470 (1113)
221 KOG1272 WD40-repeat-containing 99.5 5E-14 1.1E-18 140.9 10.8 228 346-589 132-359 (545)
222 PF02239 Cytochrom_D1: Cytochr 99.5 3.9E-11 8.4E-16 124.9 32.8 264 288-558 25-356 (369)
223 PRK01742 tolB translocation pr 99.5 1.3E-12 2.8E-17 139.8 22.3 219 293-530 197-426 (429)
224 KOG0649 WD40 repeat protein [G 99.5 3.5E-12 7.6E-17 118.1 20.5 231 345-589 12-271 (325)
225 KOG4497 Uncharacterized conser 99.5 3E-13 6.4E-18 130.0 12.7 222 348-589 13-237 (447)
226 KOG1334 WD40 repeat protein [G 99.5 4.8E-13 1E-17 134.7 14.4 256 334-590 133-422 (559)
227 KOG1354 Serine/threonine prote 99.4 1.3E-11 2.8E-16 119.6 21.2 273 299-590 25-357 (433)
228 KOG3881 Uncharacterized conser 99.4 9E-12 1.9E-16 122.7 20.2 209 294-507 100-325 (412)
229 KOG2315 Predicted translation 99.4 6.3E-11 1.4E-15 121.8 26.7 269 299-590 34-388 (566)
230 TIGR02800 propeller_TolB tol-p 99.4 5.7E-11 1.2E-15 126.9 28.1 233 322-569 170-416 (417)
231 PF10282 Lactonase: Lactonase, 99.4 8.9E-10 1.9E-14 114.5 36.0 273 315-590 2-320 (345)
232 KOG1523 Actin-related protein 99.4 6.1E-12 1.3E-16 120.9 17.9 204 342-589 9-233 (361)
233 KOG1409 Uncharacterized conser 99.4 2.2E-11 4.7E-16 118.2 20.5 312 260-590 40-392 (404)
234 PRK04792 tolB translocation pr 99.4 1.4E-10 3E-15 124.7 29.1 234 323-571 199-446 (448)
235 PRK00178 tolB translocation pr 99.4 1.3E-10 2.8E-15 124.7 28.9 234 323-571 180-427 (430)
236 KOG2394 WD40 protein DMR-N9 [G 99.4 4.7E-12 1E-16 129.0 15.8 196 309-528 183-383 (636)
237 PRK04922 tolB translocation pr 99.4 1.1E-10 2.4E-15 125.1 25.0 202 293-503 197-412 (433)
238 PF08662 eIF2A: Eukaryotic tra 99.4 3.6E-11 7.7E-16 114.0 18.3 147 433-590 9-177 (194)
239 PRK03629 tolB translocation pr 99.4 2.5E-10 5.4E-15 122.1 27.0 221 294-529 193-427 (429)
240 PRK05137 tolB translocation pr 99.4 2.4E-10 5.2E-15 122.8 26.8 204 292-504 194-414 (435)
241 PF08662 eIF2A: Eukaryotic tra 99.4 9.2E-11 2E-15 111.1 20.8 118 428-557 58-186 (194)
242 PF10282 Lactonase: Lactonase, 99.4 4.7E-09 1E-13 109.1 34.7 266 299-569 36-345 (345)
243 TIGR02658 TTQ_MADH_Hv methylam 99.3 4E-09 8.7E-14 107.7 32.6 259 322-590 27-328 (352)
244 KOG2321 WD40 repeat protein [G 99.3 1.3E-10 2.7E-15 119.5 19.4 243 341-590 49-300 (703)
245 KOG2314 Translation initiation 99.3 4.3E-10 9.3E-15 115.3 22.9 269 302-585 213-560 (698)
246 PRK02889 tolB translocation pr 99.3 6.2E-10 1.4E-14 119.1 25.0 200 293-502 189-403 (427)
247 KOG1064 RAVE (regulator of V-A 99.3 2.4E-11 5.1E-16 138.4 14.3 252 312-585 2180-2439(2439)
248 KOG4190 Uncharacterized conser 99.3 4E-11 8.6E-16 122.3 13.6 173 291-467 727-914 (1034)
249 TIGR03300 assembly_YfgL outer 99.3 4.1E-09 8.9E-14 111.1 29.7 258 312-589 105-376 (377)
250 KOG0974 WD-repeat protein WDR6 99.3 2.3E-10 4.9E-15 125.3 19.1 200 344-550 88-289 (967)
251 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.7E-08 5.9E-13 101.7 33.0 252 290-557 38-338 (352)
252 KOG2041 WD40 repeat protein [G 99.2 9E-10 1.9E-14 115.7 20.8 277 299-588 14-333 (1189)
253 KOG0280 Uncharacterized conser 99.2 3.9E-09 8.6E-14 100.7 23.1 259 320-589 44-330 (339)
254 PRK01029 tolB translocation pr 99.2 1.2E-08 2.5E-13 109.0 29.8 237 323-571 166-424 (428)
255 TIGR03300 assembly_YfgL outer 99.2 9.2E-09 2E-13 108.4 28.6 258 312-590 65-336 (377)
256 KOG0974 WD-repeat protein WDR6 99.2 7.9E-10 1.7E-14 121.2 19.3 182 400-590 100-286 (967)
257 KOG4547 WD40 repeat-containing 99.2 4.4E-09 9.6E-14 109.2 23.2 209 353-569 3-244 (541)
258 PLN02919 haloacid dehalogenase 99.2 3.9E-08 8.5E-13 115.4 34.1 246 303-553 571-892 (1057)
259 TIGR02800 propeller_TolB tol-p 99.2 7.1E-09 1.5E-13 110.8 25.6 201 293-502 183-397 (417)
260 COG5354 Uncharacterized protei 99.2 2.7E-08 5.9E-13 101.6 27.1 273 300-590 72-393 (561)
261 PRK00178 tolB translocation pr 99.1 1.5E-08 3.2E-13 108.8 26.4 202 293-503 192-407 (430)
262 KOG2315 Predicted translation 99.1 7.7E-09 1.7E-13 106.7 22.6 249 303-571 129-410 (566)
263 KOG1912 WD40 repeat protein [G 99.1 1.2E-08 2.5E-13 108.6 24.2 212 287-502 43-304 (1062)
264 KOG1409 Uncharacterized conser 99.1 1.5E-09 3.3E-14 105.6 16.0 246 334-590 15-268 (404)
265 KOG4532 WD40-like repeat conta 99.1 1.8E-08 3.9E-13 95.1 22.4 245 321-573 51-314 (344)
266 KOG4547 WD40 repeat-containing 99.1 1.6E-08 3.4E-13 105.2 23.9 191 309-503 2-221 (541)
267 KOG1064 RAVE (regulator of V-A 99.1 5.7E-10 1.2E-14 127.5 13.4 193 295-508 2204-2404(2439)
268 COG5354 Uncharacterized protei 99.1 2.7E-08 5.9E-13 101.6 24.0 273 297-590 30-346 (561)
269 PRK01029 tolB translocation pr 99.1 2.3E-08 5E-13 106.8 24.8 219 365-590 165-401 (428)
270 PF04762 IKI3: IKI3 family; I 99.1 7.3E-08 1.6E-12 111.1 29.2 274 297-589 73-376 (928)
271 PRK04792 tolB translocation pr 99.0 5.9E-08 1.3E-12 104.3 25.3 201 294-503 212-426 (448)
272 PF13360 PQQ_2: PQQ-like domai 99.0 2E-07 4.4E-12 91.3 27.2 221 321-556 2-237 (238)
273 KOG1354 Serine/threonine prote 99.0 7.7E-09 1.7E-13 100.7 16.1 200 300-504 85-361 (433)
274 KOG0882 Cyclophilin-related pe 99.0 8.6E-09 1.9E-13 103.5 15.8 256 298-557 8-313 (558)
275 PLN02919 haloacid dehalogenase 99.0 2.8E-07 6.1E-12 108.3 31.0 239 347-590 571-886 (1057)
276 COG5170 CDC55 Serine/threonine 99.0 2.3E-08 5E-13 96.0 17.4 271 299-588 26-363 (460)
277 COG2706 3-carboxymuconate cycl 99.0 2.3E-06 5.1E-11 84.7 31.5 266 321-589 15-318 (346)
278 PF08450 SGL: SMP-30/Gluconola 99.0 6.4E-07 1.4E-11 88.5 28.3 223 348-580 4-244 (246)
279 KOG0309 Conserved WD40 repeat- 99.0 5.1E-09 1.1E-13 110.6 13.5 285 299-589 24-336 (1081)
280 PRK11138 outer membrane biogen 99.0 4.2E-07 9.1E-12 96.4 28.5 260 312-589 120-391 (394)
281 COG2706 3-carboxymuconate cycl 99.0 3.1E-06 6.7E-11 83.8 32.0 269 297-570 37-345 (346)
282 PRK04043 tolB translocation pr 99.0 5.6E-07 1.2E-11 95.6 28.9 218 332-565 177-415 (419)
283 KOG0280 Uncharacterized conser 98.9 2.4E-07 5.1E-12 88.8 21.1 202 298-504 68-286 (339)
284 COG4946 Uncharacterized protei 98.9 1.4E-06 3E-11 88.4 27.3 176 307-491 327-507 (668)
285 KOG4190 Uncharacterized conser 98.9 2.9E-09 6.2E-14 108.9 7.4 138 420-559 775-916 (1034)
286 KOG0309 Conserved WD40 repeat- 98.9 1.4E-08 3.1E-13 107.3 12.4 259 285-550 55-340 (1081)
287 KOG1912 WD40 repeat protein [G 98.9 2.7E-07 5.8E-12 98.5 20.8 244 298-550 14-305 (1062)
288 PF04762 IKI3: IKI3 family; I 98.8 3.9E-06 8.4E-11 97.1 31.7 247 298-550 119-457 (928)
289 KOG2041 WD40 repeat protein [G 98.8 2.8E-07 6E-12 97.4 19.4 244 291-547 63-335 (1189)
290 KOG1645 RING-finger-containing 98.8 2E-07 4.4E-12 92.7 17.3 259 324-589 175-458 (463)
291 KOG4714 Nucleoporin [Nuclear s 98.8 4.7E-08 1E-12 92.0 11.8 165 293-460 83-255 (319)
292 KOG3914 WD repeat protein WDR4 98.8 1E-07 2.2E-12 95.0 14.9 160 347-508 66-229 (390)
293 PF15492 Nbas_N: Neuroblastoma 98.8 4.4E-06 9.6E-11 80.4 25.5 238 305-562 3-272 (282)
294 PF07433 DUF1513: Protein of u 98.8 8.7E-06 1.9E-10 80.7 27.5 232 346-584 7-278 (305)
295 KOG2066 Vacuolar assembly/sort 98.8 2.7E-07 6E-12 99.2 17.7 186 299-502 39-233 (846)
296 PF13360 PQQ_2: PQQ-like domai 98.8 5.7E-06 1.2E-10 81.0 25.7 216 364-590 2-228 (238)
297 KOG1832 HIV-1 Vpr-binding prot 98.8 4.5E-09 9.7E-14 112.9 3.6 263 288-579 1090-1376(1516)
298 KOG2695 WD40 repeat protein [G 98.7 2.7E-08 5.9E-13 97.0 8.4 165 403-571 228-402 (425)
299 PRK11138 outer membrane biogen 98.7 2.4E-06 5.3E-11 90.6 24.1 258 312-590 69-351 (394)
300 KOG1920 IkappaB kinase complex 98.7 4.9E-06 1.1E-10 93.5 25.6 271 300-589 69-362 (1265)
301 KOG4714 Nucleoporin [Nuclear s 98.7 7.9E-08 1.7E-12 90.5 9.6 158 427-590 87-252 (319)
302 KOG1275 PAB-dependent poly(A) 98.7 2.9E-07 6.2E-12 100.0 14.9 185 354-547 146-340 (1118)
303 COG4946 Uncharacterized protei 98.6 3.1E-05 6.8E-10 78.9 26.7 252 312-579 236-505 (668)
304 KOG3914 WD repeat protein WDR4 98.6 4.4E-07 9.6E-12 90.5 13.4 155 431-590 64-221 (390)
305 PRK04043 tolB translocation pr 98.6 3.1E-05 6.8E-10 82.3 27.8 205 365-585 169-391 (419)
306 KOG4532 WD40-like repeat conta 98.6 7.6E-06 1.6E-10 77.7 19.9 233 312-548 84-330 (344)
307 KOG2314 Translation initiation 98.6 9.1E-06 2E-10 84.2 21.7 259 301-571 251-592 (698)
308 PF08450 SGL: SMP-30/Gluconola 98.6 0.00016 3.4E-09 71.4 30.3 217 304-537 4-243 (246)
309 PF00400 WD40: WD domain, G-be 98.6 1.9E-07 4.2E-12 63.4 6.2 38 290-328 2-39 (39)
310 PF00400 WD40: WD domain, G-be 98.5 3.8E-07 8.2E-12 62.0 6.6 39 333-371 1-39 (39)
311 PF07433 DUF1513: Protein of u 98.5 0.00019 4E-09 71.4 27.5 231 303-547 8-283 (305)
312 KOG2695 WD40 repeat protein [G 98.5 5E-07 1.1E-11 88.3 8.9 150 316-470 228-387 (425)
313 cd00216 PQQ_DH Dehydrogenases 98.5 0.00013 2.8E-09 79.5 28.3 263 312-590 61-422 (488)
314 KOG1275 PAB-dependent poly(A) 98.4 2.9E-06 6.2E-11 92.5 14.2 151 299-457 177-340 (1118)
315 KOG1832 HIV-1 Vpr-binding prot 98.4 1.9E-07 4E-12 100.8 4.9 216 333-571 1091-1311(1516)
316 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.0005 1.1E-08 65.4 25.0 105 312-419 63-167 (354)
317 KOG2066 Vacuolar assembly/sort 98.3 1.8E-05 3.8E-10 85.6 16.8 186 343-549 39-233 (846)
318 KOG2114 Vacuolar assembly/sort 98.3 0.00015 3.2E-09 79.3 23.6 195 301-504 27-245 (933)
319 cd00216 PQQ_DH Dehydrogenases 98.3 0.00061 1.3E-08 74.3 28.8 237 313-560 111-435 (488)
320 COG5170 CDC55 Serine/threonine 98.3 4.7E-06 1E-10 80.5 10.4 238 251-501 33-366 (460)
321 PF06433 Me-amine-dh_H: Methyl 98.3 0.0015 3.2E-08 65.8 28.4 244 304-560 40-331 (342)
322 KOG2114 Vacuolar assembly/sort 98.3 0.00011 2.5E-09 80.1 21.5 207 350-563 30-258 (933)
323 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00093 2E-08 63.7 24.9 186 307-500 18-205 (354)
324 PF08553 VID27: VID27 cytoplas 98.2 0.0012 2.5E-08 74.2 28.9 145 354-501 492-646 (794)
325 KOG1008 Uncharacterized conser 98.2 7.6E-07 1.6E-11 93.5 3.7 199 299-503 56-276 (783)
326 PF15492 Nbas_N: Neuroblastoma 98.2 0.00034 7.4E-09 67.6 21.2 188 302-506 46-263 (282)
327 PRK02888 nitrous-oxide reducta 98.2 0.00058 1.3E-08 74.0 24.5 206 354-562 140-427 (635)
328 KOG3617 WD40 and TPR repeat-co 98.2 4.7E-05 1E-09 82.4 15.8 261 302-578 62-371 (1416)
329 PF00780 CNH: CNH domain; Int 98.1 0.0039 8.5E-08 62.5 28.5 230 312-561 7-267 (275)
330 KOG0882 Cyclophilin-related pe 98.1 1.8E-05 4E-10 80.1 10.5 212 342-557 8-239 (558)
331 PF06433 Me-amine-dh_H: Methyl 98.1 0.0018 3.9E-08 65.3 24.4 259 322-590 17-318 (342)
332 COG3391 Uncharacterized conser 98.1 0.008 1.7E-07 63.3 30.3 262 301-571 32-308 (381)
333 PF14583 Pectate_lyase22: Olig 98.0 0.017 3.6E-07 59.5 30.2 273 306-589 42-378 (386)
334 KOG1645 RING-finger-containing 98.0 0.00021 4.6E-09 71.7 15.8 81 294-376 188-269 (463)
335 PF03178 CPSF_A: CPSF A subuni 98.0 0.0012 2.6E-08 68.0 22.4 216 365-588 2-261 (321)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.01 2.2E-07 65.2 30.3 273 312-590 69-488 (527)
337 PRK02888 nitrous-oxide reducta 98.0 0.00083 1.8E-08 72.8 20.7 170 320-503 213-405 (635)
338 KOG1008 Uncharacterized conser 98.0 6.4E-06 1.4E-10 86.8 4.5 203 344-549 57-275 (783)
339 PF14727 PHTB1_N: PTHB1 N-term 97.9 0.026 5.7E-07 59.4 30.7 274 309-588 34-356 (418)
340 COG0823 TolB Periplasmic compo 97.9 0.0015 3.2E-08 69.4 21.7 228 333-571 182-423 (425)
341 PF08596 Lgl_C: Lethal giant l 97.9 0.0027 5.8E-08 66.8 22.8 234 301-538 3-325 (395)
342 COG3391 Uncharacterized conser 97.9 0.029 6.2E-07 59.2 30.7 237 345-588 32-279 (381)
343 PF04053 Coatomer_WDAD: Coatom 97.9 0.005 1.1E-07 65.7 24.5 222 297-549 30-262 (443)
344 PF11768 DUF3312: Protein of u 97.9 0.0036 7.7E-08 66.5 22.7 89 454-549 239-329 (545)
345 KOG1920 IkappaB kinase complex 97.8 0.005 1.1E-07 70.1 22.8 233 343-589 68-319 (1265)
346 PF11768 DUF3312: Protein of u 97.8 0.002 4.3E-08 68.4 18.6 113 345-462 207-332 (545)
347 COG3386 Gluconolactonase [Carb 97.7 0.02 4.3E-07 58.1 24.9 223 350-581 31-274 (307)
348 PF08596 Lgl_C: Lethal giant l 97.7 0.0049 1.1E-07 64.8 20.4 231 345-589 3-287 (395)
349 PF04841 Vps16_N: Vps16, N-ter 97.7 0.058 1.3E-06 57.4 28.5 168 323-503 62-247 (410)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.071 1.5E-06 58.6 29.7 241 312-561 120-502 (527)
351 PF03178 CPSF_A: CPSF A subuni 97.6 0.016 3.5E-07 59.6 23.3 215 323-546 3-262 (321)
352 PF04841 Vps16_N: Vps16, N-ter 97.6 0.035 7.5E-07 59.1 25.8 191 366-571 62-269 (410)
353 PF02897 Peptidase_S9_N: Proly 97.6 0.05 1.1E-06 58.1 27.4 242 301-554 125-409 (414)
354 KOG3621 WD40 repeat-containing 97.6 0.00046 9.9E-09 74.1 11.1 140 431-570 35-179 (726)
355 KOG3617 WD40 and TPR repeat-co 97.6 0.0003 6.5E-09 76.5 9.4 194 347-558 19-228 (1416)
356 KOG4499 Ca2+-binding protein R 97.6 0.023 5E-07 53.7 20.4 218 356-581 28-274 (310)
357 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.031 6.8E-07 58.3 23.9 244 321-582 22-301 (353)
358 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.12 2.6E-06 53.9 28.0 263 299-583 42-349 (353)
359 PF05096 Glu_cyclase_2: Glutam 97.5 0.076 1.6E-06 52.0 23.9 199 376-581 34-250 (264)
360 KOG1897 Damage-specific DNA bi 97.5 0.071 1.5E-06 59.9 26.2 281 299-590 530-854 (1096)
361 KOG2444 WD40 repeat protein [G 97.5 0.00023 5.1E-09 66.7 6.1 141 443-590 32-175 (238)
362 smart00320 WD40 WD40 repeats. 97.5 0.0003 6.6E-09 45.7 5.2 38 290-328 3-40 (40)
363 COG3490 Uncharacterized protei 97.4 0.092 2E-06 51.2 23.2 209 347-558 71-319 (366)
364 PF06977 SdiA-regulated: SdiA- 97.4 0.14 3.1E-06 50.2 25.4 200 293-499 15-247 (248)
365 PF14870 PSII_BNR: Photosynthe 97.4 0.19 4E-06 50.8 26.6 273 298-589 15-301 (302)
366 smart00320 WD40 WD40 repeats. 97.4 0.00065 1.4E-08 44.1 6.2 39 551-590 2-40 (40)
367 KOG2395 Protein involved in va 97.3 0.0091 2E-07 62.5 16.1 145 354-501 344-499 (644)
368 PF06977 SdiA-regulated: SdiA- 97.3 0.057 1.2E-06 52.9 20.7 196 387-588 24-246 (248)
369 PF04053 Coatomer_WDAD: Coatom 97.3 0.023 4.9E-07 60.7 19.2 140 428-589 31-170 (443)
370 KOG4640 Anaphase-promoting com 97.2 0.0015 3.3E-08 69.4 9.8 80 299-381 20-100 (665)
371 KOG3621 WD40 repeat-containing 97.2 0.007 1.5E-07 65.3 14.4 116 342-460 32-155 (726)
372 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.026 5.6E-07 47.4 14.7 104 302-412 2-109 (111)
373 KOG2395 Protein involved in va 97.2 0.015 3.2E-07 61.0 16.1 141 400-548 347-499 (644)
374 COG3386 Gluconolactonase [Carb 97.2 0.21 4.6E-06 50.7 24.1 216 306-537 31-273 (307)
375 PF08553 VID27: VID27 cytoplas 97.2 0.0064 1.4E-07 68.4 14.2 129 448-580 501-637 (794)
376 KOG2444 WD40 repeat protein [G 97.2 0.001 2.2E-08 62.5 6.7 143 314-459 32-177 (238)
377 PF02897 Peptidase_S9_N: Proly 97.1 0.34 7.4E-06 51.6 27.1 230 346-580 126-389 (414)
378 KOG2079 Vacuolar assembly/sort 97.1 0.0034 7.5E-08 70.6 11.0 110 299-412 89-200 (1206)
379 PHA02713 hypothetical protein; 96.9 0.15 3.3E-06 56.6 22.2 199 354-561 303-545 (557)
380 PF00780 CNH: CNH domain; Int 96.9 0.51 1.1E-05 47.1 24.4 217 354-590 6-253 (275)
381 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.075 1.6E-06 44.7 14.7 100 346-454 2-109 (111)
382 KOG1897 Damage-specific DNA bi 96.8 0.76 1.6E-05 52.1 26.2 276 302-588 586-894 (1096)
383 TIGR03074 PQQ_membr_DH membran 96.8 0.43 9.4E-06 54.5 24.7 237 312-558 194-486 (764)
384 PHA02713 hypothetical protein; 96.7 0.11 2.3E-06 57.7 19.5 181 400-590 305-531 (557)
385 COG0823 TolB Periplasmic compo 96.7 0.071 1.5E-06 56.7 17.1 188 297-492 190-389 (425)
386 PF05096 Glu_cyclase_2: Glutam 96.7 0.68 1.5E-05 45.4 23.9 197 335-537 35-249 (264)
387 PF05694 SBP56: 56kDa selenium 96.6 1.1 2.3E-05 47.0 23.8 194 354-550 86-343 (461)
388 PRK13616 lipoprotein LpqB; Pro 96.6 0.22 4.8E-06 55.3 20.3 189 341-545 347-564 (591)
389 KOG4640 Anaphase-promoting com 96.6 0.011 2.4E-07 63.1 9.4 94 385-482 21-115 (665)
390 PF05694 SBP56: 56kDa selenium 96.3 0.66 1.4E-05 48.5 20.4 155 307-463 137-346 (461)
391 PRK13616 lipoprotein LpqB; Pro 96.3 0.18 3.9E-06 56.1 17.7 175 408-589 328-522 (591)
392 KOG4441 Proteins containing BT 96.3 0.42 9.2E-06 53.0 20.6 227 312-550 285-547 (571)
393 KOG2079 Vacuolar assembly/sort 96.2 0.016 3.4E-07 65.5 8.3 104 440-547 98-201 (1206)
394 KOG4441 Proteins containing BT 96.1 0.19 4.2E-06 55.7 16.6 215 355-585 285-534 (571)
395 KOG1916 Nuclear protein, conta 96.1 0.00097 2.1E-08 73.3 -1.6 199 320-554 109-328 (1283)
396 COG3204 Uncharacterized protei 96.1 0.37 7.9E-06 47.5 16.0 161 427-587 83-258 (316)
397 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.8 3.9E-05 43.1 21.7 208 302-512 25-289 (336)
398 PRK10115 protease 2; Provision 96.0 3.9 8.4E-05 46.7 32.8 243 300-552 127-397 (686)
399 PHA03098 kelch-like protein; P 96.0 0.33 7.1E-06 53.7 18.0 184 312-503 295-512 (534)
400 COG3204 Uncharacterized protei 95.8 1.4 3.1E-05 43.5 19.0 163 339-504 81-265 (316)
401 PF10647 Gmad1: Lipoprotein Lp 95.6 0.96 2.1E-05 44.7 17.7 146 431-583 25-186 (253)
402 PF14655 RAB3GAP2_N: Rab3 GTPa 95.6 3.8 8.3E-05 43.3 25.5 87 473-560 308-409 (415)
403 PF10168 Nup88: Nuclear pore c 95.5 2.8 6E-05 47.7 22.6 76 344-419 85-181 (717)
404 PF14727 PHTB1_N: PTHB1 N-term 95.4 4.3 9.3E-05 43.0 28.2 145 355-501 37-203 (418)
405 PF14583 Pectate_lyase22: Olig 95.4 3.9 8.5E-05 42.4 22.2 224 349-583 41-303 (386)
406 PRK13684 Ycf48-like protein; P 95.3 4.1 8.8E-05 42.1 29.1 272 299-590 45-329 (334)
407 KOG3630 Nuclear pore complex, 95.3 0.14 3E-06 58.5 11.4 143 345-490 102-261 (1405)
408 COG1520 FOG: WD40-like repeat 95.3 4.5 9.8E-05 42.3 23.3 197 354-560 68-279 (370)
409 TIGR03074 PQQ_membr_DH membran 95.3 4.4 9.5E-05 46.5 23.5 113 355-468 194-353 (764)
410 PRK10115 protease 2; Provision 95.2 7.6 0.00016 44.3 27.5 112 344-458 127-254 (686)
411 PHA03098 kelch-like protein; P 95.1 1.1 2.4E-05 49.5 18.1 190 354-552 294-514 (534)
412 COG3490 Uncharacterized protei 94.8 1.8 3.8E-05 42.6 15.8 196 293-501 113-347 (366)
413 PHA02790 Kelch-like protein; P 94.8 2 4.3E-05 46.8 18.6 171 312-493 272-456 (480)
414 COG5276 Uncharacterized conser 94.7 4.8 0.0001 39.8 22.4 152 342-504 85-243 (370)
415 PF12894 Apc4_WD40: Anaphase-p 94.7 0.086 1.9E-06 37.1 5.0 34 519-553 11-44 (47)
416 PF12894 Apc4_WD40: Anaphase-p 94.6 0.11 2.3E-06 36.6 5.3 34 343-377 11-44 (47)
417 KOG2280 Vacuolar assembly/sort 94.2 2.4 5.2E-05 47.0 16.8 194 299-506 43-250 (829)
418 COG5167 VID27 Protein involved 94.0 0.55 1.2E-05 49.4 11.1 145 354-502 478-632 (776)
419 TIGR03548 mutarot_permut cycli 93.9 6.7 0.00015 40.1 19.4 104 400-504 74-196 (323)
420 COG3823 Glutamine cyclotransfe 93.8 3.7 8E-05 38.6 15.0 176 400-581 57-248 (262)
421 KOG1916 Nuclear protein, conta 93.7 0.22 4.7E-06 55.6 8.1 130 427-562 130-283 (1283)
422 PF12234 Rav1p_C: RAVE protein 93.7 1.7 3.7E-05 48.2 15.0 100 400-501 42-155 (631)
423 TIGR02604 Piru_Ver_Nterm putat 93.5 3.4 7.3E-05 43.3 16.5 146 430-581 14-202 (367)
424 KOG3630 Nuclear pore complex, 93.4 0.66 1.4E-05 53.3 11.3 128 406-536 121-260 (1405)
425 PF15390 DUF4613: Domain of un 93.3 2.2 4.7E-05 46.1 14.3 152 430-590 20-184 (671)
426 PF14781 BBS2_N: Ciliary BBSom 93.2 4 8.6E-05 35.7 13.4 119 304-425 3-133 (136)
427 PF10168 Nup88: Nuclear pore c 93.1 13 0.00029 42.3 21.4 75 430-505 85-182 (717)
428 PF08728 CRT10: CRT10; InterP 93.0 4.8 0.0001 45.2 17.2 103 398-501 113-245 (717)
429 PHA02790 Kelch-like protein; P 92.9 7.2 0.00016 42.5 18.5 144 354-503 271-424 (480)
430 PF15390 DUF4613: Domain of un 92.9 4.6 0.0001 43.7 15.9 153 344-503 20-187 (671)
431 PF14870 PSII_BNR: Photosynthe 92.8 12 0.00026 37.9 24.7 230 342-587 15-256 (302)
432 PF03022 MRJP: Major royal jel 92.8 10 0.00023 38.1 18.2 170 366-537 35-253 (287)
433 PF14761 HPS3_N: Hermansky-Pud 92.8 9.1 0.0002 36.4 17.0 101 402-504 31-165 (215)
434 PF07995 GSDH: Glucose / Sorbo 92.4 15 0.00032 37.9 22.1 231 302-544 4-330 (331)
435 PF08728 CRT10: CRT10; InterP 92.1 1.8 4E-05 48.4 12.5 116 474-590 102-244 (717)
436 COG5167 VID27 Protein involved 92.0 3.4 7.3E-05 43.8 13.4 141 400-549 481-632 (776)
437 COG5276 Uncharacterized conser 91.9 14 0.00031 36.6 28.1 273 299-590 86-367 (370)
438 PF12234 Rav1p_C: RAVE protein 91.8 3.6 7.8E-05 45.7 14.3 116 430-548 30-155 (631)
439 PF07995 GSDH: Glucose / Sorbo 91.6 18 0.0004 37.2 24.8 236 345-587 3-330 (331)
440 KOG2063 Vacuolar assembly/sort 91.5 18 0.00039 41.8 19.7 235 312-558 26-277 (877)
441 PF10313 DUF2415: Uncharacteri 91.5 0.8 1.7E-05 31.4 5.6 31 300-330 1-33 (43)
442 PLN02193 nitrile-specifier pro 91.5 24 0.00052 38.3 23.2 193 354-553 175-414 (470)
443 PF14655 RAB3GAP2_N: Rab3 GTPa 91.4 2.1 4.6E-05 45.2 11.5 90 337-426 301-407 (415)
444 PLN02153 epithiospecifier prot 91.3 20 0.00043 37.0 22.3 146 354-504 85-286 (341)
445 TIGR03547 muta_rot_YjhT mutatr 91.1 21 0.00045 36.9 21.0 51 400-450 65-128 (346)
446 PF02333 Phytase: Phytase; In 90.7 23 0.00051 36.9 21.0 196 389-590 58-288 (381)
447 PF13449 Phytase-like: Esteras 90.7 17 0.00036 37.4 17.4 149 428-578 18-230 (326)
448 TIGR02604 Piru_Ver_Nterm putat 90.6 24 0.00052 36.9 25.7 144 300-450 14-204 (367)
449 COG1520 FOG: WD40-like repeat 90.5 24 0.00053 36.8 29.9 193 313-511 69-277 (370)
450 KOG2280 Vacuolar assembly/sort 90.5 8.7 0.00019 42.8 15.2 178 299-484 83-271 (829)
451 KOG4659 Uncharacterized conser 90.4 33 0.00071 40.9 20.1 81 296-380 344-434 (1899)
452 PLN00033 photosystem II stabil 90.2 27 0.00059 36.9 32.2 151 432-589 241-396 (398)
453 TIGR03548 mutarot_permut cycli 90.1 24 0.00052 36.0 20.8 106 354-463 72-198 (323)
454 COG3292 Predicted periplasmic 90.1 32 0.00069 37.4 20.8 137 409-551 354-493 (671)
455 COG3823 Glutamine cyclotransfe 89.9 18 0.00038 34.2 15.2 171 312-489 56-245 (262)
456 KOG4460 Nuclear pore complex, 89.3 11 0.00023 40.4 14.2 97 345-465 105-204 (741)
457 PF07250 Glyoxal_oxid_N: Glyox 89.3 8.4 0.00018 37.6 13.0 147 411-559 48-207 (243)
458 KOG4499 Ca2+-binding protein R 89.2 22 0.00047 34.2 17.4 165 314-482 73-263 (310)
459 KOG2377 Uncharacterized conser 89.0 7.2 0.00016 40.9 12.6 141 433-578 26-169 (657)
460 PF10433 MMS1_N: Mono-function 88.9 40 0.00086 36.9 28.7 253 310-571 220-503 (504)
461 KOG1900 Nuclear pore complex, 88.9 5.9 0.00013 46.8 13.1 176 286-503 66-273 (1311)
462 KOG1898 Splicing factor 3b, su 88.0 34 0.00073 39.8 17.9 108 313-420 550-676 (1205)
463 PLN02153 epithiospecifier prot 87.9 36 0.00077 35.1 22.5 63 400-462 87-170 (341)
464 PF10313 DUF2415: Uncharacteri 87.7 2.1 4.5E-05 29.4 5.3 32 430-461 1-35 (43)
465 PF10214 Rrn6: RNA polymerase 87.5 26 0.00056 40.7 17.7 130 287-418 130-277 (765)
466 PF10647 Gmad1: Lipoprotein Lp 87.0 33 0.00071 33.8 21.4 152 387-542 26-188 (253)
467 KOG2247 WD40 repeat-containing 86.9 0.13 2.9E-06 53.6 -1.1 149 428-586 33-182 (615)
468 PRK14131 N-acetylneuraminic ac 86.9 43 0.00094 35.1 19.6 51 400-450 86-149 (376)
469 PF07569 Hira: TUP1-like enhan 86.6 3.8 8.2E-05 39.5 8.7 72 478-550 16-96 (219)
470 PLN02193 nitrile-specifier pro 86.5 53 0.0011 35.7 23.9 146 354-504 228-412 (470)
471 PF05935 Arylsulfotrans: Aryls 86.5 54 0.0012 35.7 21.1 151 407-561 126-313 (477)
472 KOG2377 Uncharacterized conser 86.4 13 0.00028 39.1 12.5 150 307-460 29-186 (657)
473 COG4590 ABC-type uncharacteriz 85.4 5.4 0.00012 41.7 9.3 168 333-505 210-389 (733)
474 TIGR03606 non_repeat_PQQ dehyd 85.2 26 0.00057 37.6 14.9 113 427-539 27-165 (454)
475 PF07569 Hira: TUP1-like enhan 84.8 5.3 0.00012 38.5 8.8 65 437-502 18-95 (219)
476 TIGR02276 beta_rpt_yvtn 40-res 84.4 4.9 0.00011 26.8 6.1 40 353-392 1-41 (42)
477 PRK13684 Ycf48-like protein; P 83.9 56 0.0012 33.7 23.7 141 401-547 185-329 (334)
478 KOG1898 Splicing factor 3b, su 83.8 62 0.0013 37.8 17.3 174 366-548 854-1047(1205)
479 smart00036 CNH Domain found in 83.7 53 0.0012 33.3 27.9 235 312-559 13-280 (302)
480 PF11715 Nup160: Nucleoporin N 83.0 6 0.00013 43.9 9.6 72 312-383 158-258 (547)
481 KOG1896 mRNA cleavage and poly 83.0 1.1E+02 0.0024 36.5 19.1 195 365-566 1004-1238(1366)
482 PF08801 Nucleoporin_N: Nup133 83.0 40 0.00086 36.0 15.6 30 474-503 191-220 (422)
483 PF05935 Arylsulfotrans: Aryls 82.8 77 0.0017 34.5 26.0 141 321-468 127-310 (477)
484 PF08801 Nucleoporin_N: Nup133 82.8 47 0.001 35.4 16.0 31 520-550 190-220 (422)
485 KOG3616 Selective LIM binding 82.3 12 0.00025 41.7 10.6 67 300-371 15-81 (1636)
486 COG5290 IkappaB kinase complex 81.8 49 0.0011 37.4 15.1 263 297-581 74-356 (1243)
487 PF14781 BBS2_N: Ciliary BBSom 81.5 36 0.00079 29.8 13.0 114 349-464 4-130 (136)
488 TIGR02276 beta_rpt_yvtn 40-res 81.3 8 0.00017 25.7 6.3 40 529-569 1-41 (42)
489 COG5290 IkappaB kinase complex 81.3 16 0.00034 41.0 11.3 94 344-441 247-348 (1243)
490 PF11715 Nup160: Nucleoporin N 81.3 6.9 0.00015 43.4 9.2 77 482-558 156-257 (547)
491 PF03022 MRJP: Major royal jel 81.1 64 0.0014 32.4 18.6 159 409-571 34-243 (287)
492 PF10214 Rrn6: RNA polymerase 80.8 1.2E+02 0.0026 35.3 26.5 157 341-503 77-277 (765)
493 PF02333 Phytase: Phytase; In 80.7 78 0.0017 33.1 22.9 201 354-558 67-300 (381)
494 KOG1983 Tomosyn and related SN 80.1 65 0.0014 38.5 16.9 31 298-329 34-64 (993)
495 KOG1900 Nuclear pore complex, 79.7 14 0.0003 43.9 10.8 137 449-590 97-270 (1311)
496 PRK14131 N-acetylneuraminic ac 79.6 84 0.0018 32.9 22.4 26 354-379 84-120 (376)
497 PF14761 HPS3_N: Hermansky-Pud 78.3 54 0.0012 31.3 12.5 52 442-493 29-80 (215)
498 PF13449 Phytase-like: Esteras 77.9 87 0.0019 32.1 19.3 81 299-381 19-127 (326)
499 PF10433 MMS1_N: Mono-function 77.5 1.2E+02 0.0025 33.3 25.2 224 299-529 255-503 (504)
500 KOG3616 Selective LIM binding 77.3 40 0.00086 37.7 12.7 68 344-416 15-82 (1636)
No 1
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-86 Score=658.04 Aligned_cols=461 Identities=51% Similarity=0.914 Sum_probs=432.2
Q ss_pred cccccCCCCceeeeCcChhhhcCCCCCCCCCCCcccccccccccccceeeeeccCchhhhhhccceeeeeeeeCCCCCcc
Q 007757 67 QSRPIDPSQHFIAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGNNY 146 (590)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (590)
....+||+.++|.|||+|++||+|+.||+|||++.++ .+|
T Consensus 41 ~v~~~dp~~ke~~~np~~~~l~~p~~Gp~n~f~s~q~----------------------------------------~~~ 80 (503)
T KOG0282|consen 41 QVAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQ----------------------------------------TRF 80 (503)
T ss_pred cccccCCcchhhccCCchhhhcccccCCCCcchhhhh----------------------------------------hhh
Confidence 3567999999999999999999999999999996643 468
Q ss_pred cCChhhhhhcCCcceeecchhHHHHHHHHHhhhhccccCCcccCCCCCCCCCCCcccccccCCCCCCCCccCccccccHH
Q 007757 147 VGDFEALEKNNGVSVYNIRQNEQKKRKLEKKQEAEEVDGTAVDVDPAEFNNPATDTWLMKNRKSPWAGKKEGVQTELSEE 226 (590)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 226 (590)
||+.+.++++.|.++|+..++++++||++++ ++.+.+++|.|||.++.+ |....+++++
T Consensus 81 vg~~~~ae~~~g~t~fe~~~k~~~~Rk~~~~-------------dd~~~idg~~gpWsr~~d--------E~~vak~~~~ 139 (503)
T KOG0282|consen 81 VGDVKKAEAEKGVSLFESKKKGGEQRKRVGN-------------DDSADIDGYSGPWSRYVD--------EKTVAKPTPE 139 (503)
T ss_pred ccchhhhhcccCceeecccccccchhhhccC-------------CChhhccCCCCCcccccc--------cccccCCCcc
Confidence 9999999999999999998888877776541 234558999999999887 5566778888
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcccCCcceeecccccccccceeecCCCccccC--CCCccCCcceeEEecCCCCCeeE
Q 007757 227 QKKYAEEYAKKKEEKGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAA--NDHCYIPKRLVHTWSGHTKGVSA 304 (590)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~--~~~~~~p~~~v~~l~gH~~~V~~ 304 (590)
+++.++++..++++++...+..+....+.+++|+++..|||+|+|+++|.+.... ...||+|++++++|.||+.+|++
T Consensus 140 ~~~~~de~~~k~~e~~~~~e~~~~~~ee~s~~h~k~~~dyq~r~~l~~P~dv~vnlR~~rc~~Pkk~~~~~~gH~kgvsa 219 (503)
T KOG0282|consen 140 EQKQMDEIVKKRQEKKKEKEDSEHMAEESSTLHGKSLFDYQGRSYLQKPKDVGVNLREERCYLPKKLSHNLSGHTKGVSA 219 (503)
T ss_pred hhhhhhhhhhhhhhhccccccccccccccccccccchhhccccccccCCcccCCccccceeeccHhheeeccCCccccch
Confidence 8999999988888887766777778899999999999999999999999987543 46999999999999999999999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC
Q 007757 305 IRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 305 l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~ 384 (590)
+.|+|..+++|++|++|+.|+||+++..+.++++|.+|..+|.+++|+++|..|+|+|+|+.|++||+++|+++..+..+
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~ 299 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD 299 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC
Confidence 99999669999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 007757 385 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
..++|+.+.|++ .++|++|+.|+.|+.||+|++++++++..|.++|..|.|.++|++|+++++|++++||+.+.+..+
T Consensus 300 ~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 300 KVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred CCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence 999999999987 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEE
Q 007757 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 544 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~ 544 (590)
+.+....++.+++|..+|+++++++.+.|+.|.+|.+....++...+.|.||..+++.+.+.|||||++|++|+.+|.++
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 545 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 545 iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+||+++.+++..+++|.++|+.+.|+|...+.|||||+||.|+|||
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999999999997
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-44 Score=348.75 Aligned_cols=324 Identities=23% Similarity=0.418 Sum_probs=282.0
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007757 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~D 321 (590)
++.+..-...+.+++..+.+++.|...|.|-. ......++.+||...|.||+|+|+ |..||+|+.|
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~-------------~TeTp~~t~KgH~~WVlcvawsPD-gk~iASG~~d 178 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDL-------------DTETPLFTCKGHKNWVLCVAWSPD-GKKIASGSKD 178 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeecc-------------CCCCcceeecCCccEEEEEEECCC-cchhhccccC
Confidence 44445555668888888999999999999933 344567899999999999999999 9999999999
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEec-----CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 396 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-----dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
|.|++||........+.+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+..+ ...+.++.+.+
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VTCvrwGG 257 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVTCVRWGG 257 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceEEEEEcC
Confidence 99999999666677789999999999999987 5679999999999999999999999888654 33344444433
Q ss_pred CCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEe-----------CCC------------------------
Q 007757 397 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-----------DSN------------------------ 441 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~-----------p~~------------------------ 441 (590)
..++++|+.|++|++|+...|.+...+.+|...|+.|+++ |.+
T Consensus 258 --~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 258 --EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred --CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 3689999999999999999999999999999999999887 222
Q ss_pred -CEEEEEeCCCcEEEEECCCCc-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccc
Q 007757 442 -RRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 442 -~~l~s~s~Dg~I~iwdl~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
.+|++|++|.++.+|+-...+ ++..+ .+|..-|..+.|+|+++++|+++.|..|++|+.++++.+ ..|.||.
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l---asfRGHv-- 409 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL---ASFRGHV-- 409 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh---hhhhhcc--
Confidence 359999999999999975544 44444 468889999999999999999999999999999998665 6788884
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
..|..++|+.|.++|++|+.|.++++|++++.++..-+.+|...|.++.|+| ++..+++||.|..+++|
T Consensus 410 ~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 410 AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLW 478 (480)
T ss_pred ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEee
Confidence 5678899999999999999999999999999999999999999999999999 77899999999999999
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-44 Score=345.52 Aligned_cols=293 Identities=23% Similarity=0.419 Sum_probs=257.7
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
.+|-..+.||.++|.|++|+|+ |..|++|+.|.++++||+ .+..++.+.++|...|.|++|+|||+.|++|+.||.|+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~-~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDL-DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred ceeccccCCCCCcEEEEEecCC-CceEEecCCCceEEeecc-CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 3667788999999999999998 999999999999999999 68899999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEccCCCCc--eEEEEecCC--CCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE
Q 007757 369 YWDTETGQVIRTFSTGKIP--YVVKLNPDD--DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~~~--~~~~~~~~~--~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
+||..+|+++..--.+|.. ..++|.|.. ....+|++++.||.|+|||+..+.++..+.+|..+|+|+.|-.+| ++
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LI 261 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eE
Confidence 9999999887665555544 455555432 234589999999999999999999999999999999999997655 99
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEc-----------CCCC-------------------------EEE
Q 007757 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH-----------PNTN-------------------------WLA 488 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~s-----------p~g~-------------------------~l~ 488 (590)
+++|.|++|++|+...+.+++.+. +|.+.|+.++++ |.++ .|+
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 999999999999998888777765 588888888876 3233 499
Q ss_pred EEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEE
Q 007757 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 489 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+|+.|.++.+|+..... ..+....+| ...|+.+.||||+++|++++-|..|++||.++|+.+.+|++|-+.|..++
T Consensus 341 SgsDd~tlflW~p~~~k--kpi~rmtgH--q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSK--KPITRMTGH--QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred EecCCceEEEecccccc--cchhhhhch--hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 99999999999865432 234567777 56788999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEeC
Q 007757 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|+. +.++|++|+.|.+|++||
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEE
Confidence 999 788999999999999997
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=309.67 Aligned_cols=292 Identities=23% Similarity=0.353 Sum_probs=258.6
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
+..++|+||.+.|.++.|+++ .++|+++|.||.+.|||.. +...+..+.-....|..++|+|.|+++++|+.|+...|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~-TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSF-TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcc-cccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 445899999999999999999 9999999999999999994 66666777778899999999999999999999999999
Q ss_pred EECCCC--c---EEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeC-CCCE
Q 007757 370 WDTETG--Q---VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRR 443 (590)
Q Consensus 370 Wd~~t~--~---~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p-~~~~ 443 (590)
|++.+. + .+...-.++..+..++.+.++ ..|++++.|.+..+||+++++.++.|.+|.+-|.++.++| +++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 999855 2 223333455555444444433 5699999999999999999999999999999999999999 9999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceE
Q 007757 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
|++|+.|+..+|||++.+.+.+.+. .|...|.+++|+|+|.-|++|+.|++.++||++....+... ........|+
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y---s~~~~~~git 277 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY---SHDSIICGIT 277 (343)
T ss_pred EEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee---ccCcccCCce
Confidence 9999999999999999998888885 69999999999999999999999999999999987666433 3344456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|.++..+| ++.-|+||++|.+||||.
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999 778999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=331.25 Aligned_cols=286 Identities=24% Similarity=0.398 Sum_probs=261.8
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecC--CCEEEEEeCCCeEEEE
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYW 370 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~I~vW 370 (590)
..-.|-+.+|..+.|+++ +..|+|||.+|.++||+. .+...+.+|.+|...|.++.|+|. +..++||+.||++++|
T Consensus 169 ~SQ~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~-~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSV-PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred hhhccCCCcceeeEeecC-CCeEEEeecCCceeEeec-CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 334478899999999999 999999999999999999 677999999999999999999995 6799999999999999
Q ss_pred ECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC
Q 007757 371 DTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 371 d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
++++...+..+..+ ..+.-+.|+|++ .+|.+++.|.+-++||++++..+....+|...|.+|+|.++|..+++|+.
T Consensus 247 ~~~~e~~l~~l~gH~~RVs~VafHPsG---~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 247 KLSQETPLQDLEGHLARVSRVAFHPSG---KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred ccCCCcchhhhhcchhhheeeeecCCC---ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc
Confidence 99998888888654 345567777755 79999999999999999999988888999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|..-+|||++++.++..+.. |...|.+|.|+|+|..||+|+.|++++|||++....+ ..+.+| ...|+.|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l---y~ipAH--~nlVS~Vk~~p 397 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL---YTIPAH--SNLVSQVKYSP 397 (459)
T ss_pred cchhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccccc---eecccc--cchhhheEecc
Confidence 99999999999999998864 9999999999999999999999999999999987654 455666 56688999999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 530 -DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 -dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.|.+|++++.|++++||...++.+++++.+|.+.|.++.+++ +++.++|++.|.+|++|.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 789999999999999999999999999999999999999999 788999999999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=310.01 Aligned_cols=282 Identities=24% Similarity=0.391 Sum_probs=251.0
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCC-CCCEEEEEeCC
Q 007757 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMD 321 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~-~g~~L~sgs~D 321 (590)
..++.....+...+....+++.+...+.|..+ ....+++|.||+..|.++.|+|. ++..|+||+.|
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~-------------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVP-------------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecC-------------CcceeEEEeccccceeeEEEccCCCccceeeeccC
Confidence 33455556678888888999999999999553 23678999999999999999998 47799999999
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCc
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQN 400 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~ 400 (590)
|++++|++ ....++..+.+|...|..++|+|+|++|+|+|+|.+-++||++++..+.....+ ..+..+.|.+++ .
T Consensus 241 gtvklw~~-~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG---S 316 (459)
T KOG0272|consen 241 GTVKLWKL-SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG---S 316 (459)
T ss_pred Cceeeecc-CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC---c
Confidence 99999999 566899999999999999999999999999999999999999999877655443 456678888765 6
Q ss_pred EEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEE
Q 007757 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
++++|+.|..-+|||+++++++..+.+|..+|.++.|+|+|..|++||.|++++|||++....+..+. .|..-|+.+.|
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~ 395 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKY 395 (459)
T ss_pred eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEe
Confidence 89999999999999999999999999999999999999999999999999999999999888866664 69999999999
Q ss_pred cC-CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 481 HP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 481 sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
+| .|.+|++++.|++++||...+..++ +.+.|| .+.|.++++++|++++++++.|.++++|.
T Consensus 396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~---ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 396 SPQEGYFLVTASYDNTVKIWSTRTWSPL---KSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCCeEEEEcccCcceeeecCCCcccc---hhhcCC--ccceEEEEeccCCceEEEeccCceeeecc
Confidence 98 6889999999999999999886555 677888 67799999999999999999999999995
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-37 Score=292.61 Aligned_cols=293 Identities=24% Similarity=0.476 Sum_probs=259.2
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
++..+.||.+.|+.+.|+|+ |.+|+||+.|..|.+|++..+.+....+++|+++|..+.|.+|++.|++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 34567799999999999998 99999999999999999977778888999999999999999999999999999999999
Q ss_pred ECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
|+++|++++.++.+.. .+-.+.|...+..++.+|+.|+++++||+|+...++++. ..-+++++.|...+..+++|+-|
T Consensus 118 D~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 9999999999876544 333444766777889999999999999999998888774 46689999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecc-cccccCccccc--ceEEEEE
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNF 527 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~--~v~~v~~ 527 (590)
+.|++||++.......+. +|...|+.+..+|+|.++.+-+.|+++++||++......+ +..+.++...- ....++|
T Consensus 196 n~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred CceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999887776664 6999999999999999999999999999999986544444 56666665432 3456899
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
+|+++++.+|+.|..+++||..+...+..+.+|.+.|+++.|+| ...+|.+|+.|.+|.+
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYL 334 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEe
Confidence 99999999999999999999999999999999999999999999 6779999999999976
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6e-37 Score=293.81 Aligned_cols=294 Identities=26% Similarity=0.467 Sum_probs=261.3
Q ss_pred CCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEE
Q 007757 282 NDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 282 ~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~ 361 (590)
.++...|.++.+.++||.+.|.||++.|. ..+|++|+.|++|+|||+ .++++..++.||-..|..+++++-..+|+++
T Consensus 134 rPeWHapwKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDl-atg~LkltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDL-ATGQLKLTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred CccccCcceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEc-ccCeEEEeecchhheeeeeeecccCceEEEe
Confidence 34556789999999999999999999998 899999999999999999 7999999999999999999999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC
Q 007757 362 SYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
+.|+.|+.||++..+.++.+..+ ..++++.++|.. ..|++|+.|..+++||+++...+..+.+|..+|..+.+.|-
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl---dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL---DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEeccccc---eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 99999999999999999888654 445677777755 57999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccccc
Q 007757 441 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
+..+++||.|++|++||++.++....+.. |...+.+++.+|....|++++.|+ |+.|++..+..+.. +.+| ..
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n---lsgh--~~ 361 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN---LSGH--NA 361 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeeec-ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc---cccc--cc
Confidence 99999999999999999999998888764 888999999999999999988775 89999987765533 5666 46
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~--------h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.+.+++...|| ++++|+.+|.|.+||++++..++.+.. ....|.+.+|.. .+..|+||..|.+|++|
T Consensus 362 iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 362 IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMY 436 (460)
T ss_pred eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEE
Confidence 67788888877 888999999999999999987776632 234688899987 78899999999999999
No 9
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-37 Score=297.21 Aligned_cols=295 Identities=23% Similarity=0.407 Sum_probs=259.7
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC--eeEEEeccCCCceeEEEEecCCCEEEEEe
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s 362 (590)
.-+|.+..+++..|+..|.-+.|+++ |++|||++.|.+..||.+.... +...++.+|..+|.-+.||||.++|++|+
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 35788888999999999999999999 9999999999999999985444 46788999999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEccCC--CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEccc-CCceeEEEEeC
Q 007757 363 YDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVD 439 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h-~~~V~~i~~~p 439 (590)
.|..+.+||+.+|.+...+..+ ..+.+++|.|++. .+++|+.|+.|..||+.... .....+- ...|.+++..+
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC
Confidence 9999999999999999988776 5667888888764 59999999999999997543 3333332 25699999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccc
Q 007757 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
||+++++.+.|..|++++.........+. ...+|++++++.+++++++.-.+..|.+||+..... ...+.||...
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l---v~kY~Ghkq~ 439 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL---VRKYFGHKQG 439 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH---HHHhhccccc
Confidence 99999999999999999998776665553 566899999999999999999999999999985433 3567788878
Q ss_pred cceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 520 GYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 520 ~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.++..-||.- +..++++|+.|+.|+||+..+++++..+.+|...|++++|+|.+..++|++|+||+||||
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 8888888865 458999999999999999999999999999999999999999999999999999999999
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-35 Score=275.13 Aligned_cols=289 Identities=24% Similarity=0.402 Sum_probs=243.8
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC----CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN----SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~----~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+.-++++|++.|+.++..+.+...|+++++|.++.+|++.. .+.+++.+.||+..|..+..+++|++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 355689999999999999999889999999999999999843 3567899999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc-cCCceeEEEEeCC--C
Q 007757 366 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDS--N 441 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~-h~~~V~~i~~~p~--~ 441 (590)
.+++||+.+++..+.|..+ ..+.++++++++ ..+++|+.|.+|.+|++........... +.+.|+|++|+|+ +
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn---~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDN---RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCC---ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999999988888664 445677777765 5699999999999999976543333322 3789999999998 7
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
.+|++++.|++|++||+++.+....+. +|.+.++.++++|+|..+++|+.||.+.+||++.+..+..+. . ...
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---a---~~~ 235 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---A---FDI 235 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---C---CCe
Confidence 899999999999999999887666654 699999999999999999999999999999999877653332 2 366
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----C-----CCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC----H-----EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~----h-----~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|.+++|+|+--+|+.+. +..|+|||+.++.++..++. . .-.+.+++|++ ++..|++|-.|+.|++|.
T Consensus 236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEE
Confidence 88999999876666655 44599999999988776652 1 23568899999 788999999999999993
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-36 Score=291.27 Aligned_cols=289 Identities=27% Similarity=0.453 Sum_probs=261.1
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
.+.+.+.||..+|+.+-|+|. -.++++++.|++|++||. .++++.+.++||...|.+|+|+..|++|++|+.|-.+++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~-~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDT-ETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEc-cchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 566778899999999999999 889999999999999999 789999999999999999999999999999999999999
Q ss_pred EECCC-CcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 370 WDTET-GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 370 Wd~~t-~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
||..+ .++++.... .+.+.++++.|.+ .++++++.|.+|+.|++.++.++.++.+|...|..+..+.||..++++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecC---CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 99987 445554433 4566778888865 689999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC---------------CCEEEEEEcCCeEEEEEccCceeeccccc
Q 007757 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN---------------TNWLAAQSLDNQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~---------------g~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 512 (590)
+.|.+|++|-+.+..+...+. .|.++|.+++|.|. +.++.+++.|++|++||+.++..+ .+
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL---~t 329 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL---FT 329 (406)
T ss_pred CCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE---EE
Confidence 999999999999886665554 48899999999872 358999999999999999998665 55
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.+| ..+|+.++|+|.|+||+++..|++|++||+++++++.++.+|...|+++.|+. ...+++||+-|.++++|.
T Consensus 330 L~gh--dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 330 LVGH--DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred Eecc--cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeee
Confidence 6677 67899999999999999999999999999999999999999999999999998 677999999999999994
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7e-35 Score=267.63 Aligned_cols=270 Identities=20% Similarity=0.402 Sum_probs=239.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc--EEEEccCC-CCce
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--VIRTFSTG-KIPY 388 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--~~~~~~~~-~~~~ 388 (590)
.-+|+|+|.|.+|++|.. .++.|.++++.....|+.+.+.|+++.|++++. ..||+||++++. ++.+|..+ +.+.
T Consensus 10 ~viLvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 458999999999999999 799999999988899999999999999999886 789999999875 47777765 5667
Q ss_pred EEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007757 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~ 468 (590)
.+.|..++ ..+++|+.||+++|||+|...+.+.|. |..+|+++..+|+...|++|..+|.|++||+....+...+.
T Consensus 88 aVgF~~dg---rWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 88 AVGFQCDG---RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEEEeecC---eEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 77777755 799999999999999999977666664 77999999999999999999999999999999988877777
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce---eecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007757 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 545 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i 545 (590)
.....+|.++.+.|+|.+|+.+...|..++|++.+.. .+.++..+..| .+++..+.+|||+++|++++.|.+++|
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEE
Confidence 6677899999999999999999999999999986533 33444556666 688999999999999999999999999
Q ss_pred EeCCCC-eEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 546 WDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 546 wd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|+..+. +....+.+|..-+..++|+. ++.+|+||+.|+.+++||
T Consensus 242 wn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWD 286 (311)
T ss_pred EecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecc
Confidence 999988 77788899999999999999 788999999999999997
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.1e-34 Score=282.74 Aligned_cols=287 Identities=30% Similarity=0.569 Sum_probs=251.2
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
++++++|.++|++++|+|+ +++|++++.||.|++|++ ........+..|...+..+.|++++++|++++.+|.|++|+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEe-eCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 4577899999999999999 899999999999999999 56667888889999999999999999999999999999999
Q ss_pred CCCCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 372 TETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 372 ~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
+.+++.+..+..+. .+.++.+.+. ..++++++.++.|.+||+++++....+..|...|.++.|+|++.++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 99987777776543 4556666664 3577777779999999999999899998899999999999998888888889
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCC
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
+.|++||++....+..+. .+...+.++.|+|+++.+++++.++.|++||++....... +..+ ...+.++.|+|+
T Consensus 157 ~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~---~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 157 GTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT---LRGH--ENGVNSVAFSPD 230 (289)
T ss_pred CcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc---hhhc--CCceEEEEEcCC
Confidence 999999998877776665 4777899999999999999999999999999987554433 3233 347888999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 531 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 531 g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.++++++.+|.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.||.|++||
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 99999998899999999999999999999999999999999 677999999999999997
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-34 Score=287.45 Aligned_cols=319 Identities=22% Similarity=0.325 Sum_probs=261.0
Q ss_pred cccCCcceee-cccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 007757 250 EHVEDKSTFH-GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 250 ~~~~~~s~~~-~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd 328 (590)
..+.++.+|. .+++.|..+-.|-- .|.+.-++++.|+.-|+|++|+|+ |.+++|++.||+|.|||
T Consensus 153 ~~~KpsRPfRi~T~sdDn~v~ffeG-------------PPFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 153 VDFKPSRPFRIATGSDDNTVAFFEG-------------PPFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYD 218 (603)
T ss_pred eeccCCCceEEEeccCCCeEEEeeC-------------CCeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEc
Confidence 3455555554 34455544443322 477888999999999999999999 99999999999999999
Q ss_pred ccCCCeeEEEec---cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc--eEEEEecCCCCCcEEE
Q 007757 329 VVNSGKCMRTYM---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILL 403 (590)
Q Consensus 329 ~~~~~~~~~~~~---~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~lv 403 (590)
= .+++.+..+. +|.+.|.+|+|+||++.|++++.|.+++|||+.+.++++++..+... ..+.+.+.. ..|+
T Consensus 219 G-ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk---d~lI 294 (603)
T KOG0318|consen 219 G-KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK---DHLI 294 (603)
T ss_pred C-CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC---CeEE
Confidence 8 6888888887 89999999999999999999999999999999999999999887662 333444433 4599
Q ss_pred EEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE-----------EEe-----
Q 007757 404 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI-----------KYI----- 467 (590)
Q Consensus 404 sg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~-----------~~~----- 467 (590)
+.+.+|.|.+++.........+.+|...|+++..++++.+|++|+.||.|.-|+..++..- ..+
T Consensus 295 tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 9999999999999999999999999999999999999999999999999999997542211 000
Q ss_pred ---------------e-------------------------------------------------cCCCCcccEEEEcCC
Q 007757 468 ---------------S-------------------------------------------------EPHMHSMPSISLHPN 483 (590)
Q Consensus 468 ---------------~-------------------------------------------------~~~~~~i~~i~~sp~ 483 (590)
. .+......+++++|+
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence 0 001123557899999
Q ss_pred CCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEecCCC
Q 007757 484 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR-TLKCHEG 562 (590)
Q Consensus 484 g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~-~l~~h~~ 562 (590)
+..+++|+.|+.|+||.+....... ......| .+.++.++||||+.||++|+..+.+.+||+.+.+... .+.-|..
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~e-e~~~~~h--~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta 531 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKE-EAKLLEH--RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA 531 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccc-eeeeecc--cCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee
Confidence 9999999999999999997754322 2223334 5779999999999999999999999999999887733 3345999
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 563 VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.|.+++|+| +..+||||+.|-+|.||+
T Consensus 532 kI~~~aWsP-~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 532 KINCVAWSP-NNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eEEEEEeCC-CceEEEeccccceEEEEE
Confidence 999999999 677999999999999995
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-34 Score=286.67 Aligned_cols=313 Identities=22% Similarity=0.402 Sum_probs=265.4
Q ss_pred eecccccccccceeecCCCccccCCCCccCCcceeEE--ecC----CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC
Q 007757 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHT--WSG----HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN 331 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~--l~g----H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~ 331 (590)
++..++.|...|.|-.....-. |-....+.|. +-+ -+..|++|+|+.+ |.+||+|+.||.++||+.
T Consensus 193 llasg~~~s~ari~~l~e~~~~-----~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~LatG~~~G~~riw~~-- 264 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNI-----GSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLATGSEDGEARIWNK-- 264 (524)
T ss_pred hhhccCCccceeeeeehhhccc-----cchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeEEEeecCcEEEEEec--
Confidence 5567778888899866541110 0000011111 112 2467999999999 999999999999999997
Q ss_pred CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc-eEEEEecCCCCCcEEEEEEcCCc
Q 007757 332 SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 332 ~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
.+..+.+|..|.++|.+|.|+..|++|++++.|+++.+||..++...+.|..+..+ .-+.|..+. -|++++.|+.
T Consensus 265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~----~F~ts~td~~ 340 (524)
T KOG0273|consen 265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND----EFATSSTDGC 340 (524)
T ss_pred CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc----eEeecCCCce
Confidence 78999999999999999999999999999999999999999999999999887777 446666543 4999999999
Q ss_pred EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCC------
Q 007757 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT------ 484 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g------ 484 (590)
|+++-+....++.++.+|.++|++|.|+|.+..|+++|+|++++||..........+. .|...|..+.|+|.|
T Consensus 341 i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~ 419 (524)
T KOG0273|consen 341 IHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNP 419 (524)
T ss_pred EEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCC
Confidence 9999999999999999999999999999999999999999999999998887777764 588889999999964
Q ss_pred ---CEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 007757 485 ---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 485 ---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
..+++++.|++|++||+..+.++.. |..| ..+|.+++|||+|+||++|+.||.|.+|+.+++++++.+.+.
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~gv~i~~---f~kH--~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~- 493 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESGVPIHT---LMKH--QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT- 493 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCCceeEe---eccC--CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-
Confidence 4799999999999999998876644 5455 467889999999999999999999999999999999999864
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 562 GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 562 ~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.|..++|+. .+.+|..+-.||.+++-|
T Consensus 494 ~~Ifel~Wn~-~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 494 GGIFELCWNA-AGDKLGACASDGSVCVLD 521 (524)
T ss_pred CeEEEEEEcC-CCCEEEEEecCCCceEEE
Confidence 4599999999 668999999999998865
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.1e-34 Score=262.57 Aligned_cols=293 Identities=20% Similarity=0.356 Sum_probs=254.7
Q ss_pred cceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC-
Q 007757 255 KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG- 333 (590)
Q Consensus 255 ~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~- 333 (590)
...++.+.++|..+|.|-+ ...+|.++++-..+.|+.+...|+ ++.|++++. ..|++||+....
T Consensus 9 ~~viLvsA~YDhTIRfWqa-------------~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np 73 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQA-------------LTGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNP 73 (311)
T ss_pred CceEEEeccCcceeeeeeh-------------hcCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCC
Confidence 6678999999999999954 456889999988999999999999 888888875 579999995443
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEE
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~v 413 (590)
.++.+|.+|.+.|+.+.|..+|+++++||.||+++|||++...+-+.+....++.++.++|+. ..|++|..+|.|++
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ---teLis~dqsg~irv 150 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ---TELISGDQSGNIRV 150 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc---ceEEeecCCCcEEE
Confidence 389999999999999999999999999999999999999998888889888888888888865 56999999999999
Q ss_pred EECCCCceEEEEc-ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc------EEEEeecCCCCcccEEEEcCCCCE
Q 007757 414 WDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV------VIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 414 wDl~t~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~------~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
||+....+...+. ....+|.++...|+|.+++.+...|.+++|++-... ++..+ ..|...+..+.++|++++
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~-~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF-QAHNGHILRCLLSPDVKY 229 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe-ecccceEEEEEECCCCcE
Confidence 9999886665553 345689999999999999999999999999985532 22222 357888999999999999
Q ss_pred EEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEE
Q 007757 487 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG 566 (590)
Q Consensus 487 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 566 (590)
|++++.|.+++||++.+. +.....+.+| ..++...+||.||+||++|+.|+.+++|++..++.+....+|.....|
T Consensus 230 lat~ssdktv~iwn~~~~--~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDF--FKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred EEeecCCceEEEEecCCc--eeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 999999999999999876 3334566777 578999999999999999999999999999999999999999988888
Q ss_pred EEEc
Q 007757 567 CEWH 570 (590)
Q Consensus 567 v~~s 570 (590)
++.+
T Consensus 306 ~~ln 309 (311)
T KOG0315|consen 306 VALN 309 (311)
T ss_pred EEee
Confidence 7764
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-34 Score=261.79 Aligned_cols=288 Identities=25% Similarity=0.430 Sum_probs=253.0
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCe
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
+|.+-.+.+..|.++|.+++|+-+ |++.++|+.|.+|++|+. ..+.+++++.+|...|.+++.+.|...|++|+.|+.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred CcchhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecc-cccceeeeecCCCceeeeccccccccccccCCCCce
Confidence 466778899999999999999999 999999999999999999 789999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC--ceEEEEcccCCceeEEEEeCCCCE
Q 007757 367 IKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~--~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
|.+||+++|+.++.+..+. .+..+.|+... .++++|+.|.++++||.++. ++++.+......|.+|... +..
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees---SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEES---SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE 157 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcc---eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE
Confidence 9999999999999997653 34566666543 68999999999999999875 6888898888999999986 568
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceE
Q 007757 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
+++||.||+++.||++.+....- ...++|++++|+++++.+++++.|++|++.|-.+++.+ ..+.||.+..+-.
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sD---y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL---~sYkGhkn~eykl 231 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSD---YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL---KSYKGHKNMEYKL 231 (307)
T ss_pred EEeeccCCcEEEEEeecceeehh---hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH---HHhcccccceeee
Confidence 99999999999999998876543 36779999999999999999999999999999887655 6678888888888
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCC-EEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV-CIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~-V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
..+++.....+++|+.||.|++||+.....+..+..|... |+++.++|... .|+++. ++.+.+|
T Consensus 232 dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~-~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 232 DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD-DFITAT-GHGDLFW 296 (307)
T ss_pred eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc-ceeEec-CCceece
Confidence 8899999999999999999999999999999999999887 89999999544 455554 3344444
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-33 Score=264.25 Aligned_cols=280 Identities=21% Similarity=0.382 Sum_probs=234.6
Q ss_pred ceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCee
Q 007757 256 STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC 335 (590)
Q Consensus 256 s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~ 335 (590)
..++-+...|...=.|.....+ ..-...++.|+||+..|..+..+++ |++.++++.|+++++||+ ..++.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd--------~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl-~~g~~ 97 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDD--------IKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDL-ATGES 97 (315)
T ss_pred CceEEEcccceEEEEEEeccCc--------cccCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEe-cCCcE
Confidence 4455667778887778655442 2335678999999999999999999 999999999999999999 67899
Q ss_pred EEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC--CCCceEEEEecCCCCCcEEEEEEcCCcEEE
Q 007757 336 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~v 413 (590)
.+.|.+|...|.+++|++|.+.|++|+.|++|++|++-.......... ..-+.|++|+|... ..+|++++.|++|++
T Consensus 98 t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~-~p~Ivs~s~DktvKv 176 (315)
T KOG0279|consen 98 TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES-NPIIVSASWDKTVKV 176 (315)
T ss_pred EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC-CcEEEEccCCceEEE
Confidence 999999999999999999999999999999999999986655544444 34566888888753 478999999999999
Q ss_pred EECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007757 414 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 414 wDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d 493 (590)
||+++-++...+.+|.+.++.++++|||..+++|+.||.+.+||++.++.+..+ .+...|.+++|+|+.-+|+.+. +
T Consensus 177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~ 253 (315)
T KOG0279|consen 177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-A 253 (315)
T ss_pred EccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-C
Confidence 999999999999999999999999999999999999999999999999987766 6888999999999987776655 5
Q ss_pred CeEEEEEccCceeeccccc-ccCc---ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 494 NQILIYSTRERFQLNKKKR-FAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 494 g~I~iwd~~~~~~~~~~~~-~~~~---~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
..|+|||+.++..+..+.. +.+. .......+++|++||..|++|..|+.|++|.+.
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 5599999988765543321 1111 113345679999999999999999999999864
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.5e-33 Score=267.78 Aligned_cols=287 Identities=22% Similarity=0.351 Sum_probs=243.6
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
-+++|..|+..|.+++.+|+ .++++||+.|..-.||++ .++..+..+.+|...|+++.|+.+|.+|+||+.+|.|+||
T Consensus 56 S~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~-~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDI-STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ceeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEc-cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 35789999999999999996 999999999999999999 6888999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC
Q 007757 371 DTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 371 d~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
...++.....+. ......-++|+| ..++|++|+.||.|.+|.+.++...+.+.+|..++++-.|.|+|++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp---~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHP---RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEecc---cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 999999888775 334445566666 4589999999999999999998889999999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcC-----------------------------------------------
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP----------------------------------------------- 482 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp----------------------------------------------- 482 (590)
||+|++|+..++.++..+........+++.++.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 999999999999888777522111111111111
Q ss_pred ------CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 007757 483 ------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 556 (590)
Q Consensus 483 ------~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~ 556 (590)
.-.++|+|+.||+|.|||+...... ..-.| ...|+.+.|-+ ..+|++++.+|.|++||.++|+++.+
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R----~~c~h--e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLR----HICEH--EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFT 363 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhh----eeccC--CCceEEEEEcC-cchheeeccCceEEeeeccccceEEE
Confidence 1135678888999999998653222 11222 34588899998 78999999999999999999999999
Q ss_pred EecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 557 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 557 l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.+|...|.+++++| +.++++|+|.|++.+||+
T Consensus 364 y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 364 YTGHQMGILDFALSP-QKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EecCchheeEEEEcC-CCcEEEEecCCCeEEEEe
Confidence 999999999999999 788999999999999985
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=298.09 Aligned_cols=291 Identities=27% Similarity=0.558 Sum_probs=249.1
Q ss_pred eEEecCC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe--eEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 292 VHTWSGH-TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 292 v~~l~gH-~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
...+.+| ...|+|+.|+++ |..|++++.|+.+++|+. .... ..+.+.+|...|++++|+|++.++++++.|++|+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~-~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKL-EGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeec-ccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 5666665 889999999999 888999999999999999 4555 7778889999999999999999999999999999
Q ss_pred EEEC-CCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 369 YWDT-ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 369 vWd~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
|||+ ..+.+++++. +|...+.++.+.+.. +++++|+.|++|++||+++++++..+.+|.+.|++++|++++++|+++
T Consensus 229 iwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 9999 5558888887 444433444443343 799999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCc--EEEEeecCCCC-cccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccc-cceE
Q 007757 448 SDDKSLRVWEFGIPV--VIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA-GYAC 523 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~--~~~~~~~~~~~-~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~v~ 523 (590)
+.|+.|+|||+.+.. +...+...... ++.++.|+|++.+|++++.|+.+++|++...... ..+.+|... ..+.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~---~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV---GTYTGHSNLVRCIF 383 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce---eeecccCCcceeEe
Confidence 999999999999988 44555443333 6999999999999999999999999999876554 344455433 2334
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCCEEEEEEcCCCCCEEEEEe--CCCcEEEeC
Q 007757 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCG--WDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g--~DG~I~iWD 590 (590)
+..+++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.|+| ...++++++ .|+.|++|-
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEec
Confidence 4556889999999999999999999999999999999 88999999999 788999998 689999993
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=281.61 Aligned_cols=292 Identities=19% Similarity=0.382 Sum_probs=249.5
Q ss_pred CCcceeEEe-cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 287 IPKRLVHTW-SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 287 ~p~~~v~~l-~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
++.+.+++- ..-..+|..|+|.|+ |+.|++|+..|.+.||+. .....-..++.|..+|+++.|+++|.+++||+.+|
T Consensus 83 ~~tKf~h~s~NKvkc~V~~v~WtPe-GRRLltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG 160 (464)
T KOG0284|consen 83 FTTKFVHTSSNKVKCPVNVVRWTPE-GRRLLTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGG 160 (464)
T ss_pred cccceEeccccccccceeeEEEcCC-CceeEeecccccEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCc
Confidence 344444443 445678999999999 999999999999999997 34444455678999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE
Q 007757 366 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
.|++|+..-.........+ ..+.+++|+|.+ ..|++++.||.|+|||....+....+.+|.-.|.++.|+|....+
T Consensus 161 ~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD---skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 161 MIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND---SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred eEEecccchhhhHHhhHhhhhhhheeccCCCC---ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 9999998654433322223 467788888854 569999999999999999998888889999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEE
Q 007757 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
+++|.|..|++||.+++.++..+. .|...|..+.|.|++++|++++.|..+++||+++. ..+..+.+| ...+++
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~H--kkdv~~ 311 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGH--KKDVTS 311 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcc--hhhhee
Confidence 999999999999999999998886 48999999999999999999999999999999954 344667777 466889
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEE-ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 525 VNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 525 v~~sp-dg~~l~sgs~dg~I~iwd~~t~~~~~~l-~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.|+| ...+|.+|+.||.|.+|.+...+++..+ .+|.+.|.+++|+| -+.+|++|+.|.++++|.
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWT 378 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeec
Confidence 99999 5668889999999999999866666655 48999999999999 678999999999999993
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=282.06 Aligned_cols=270 Identities=22% Similarity=0.432 Sum_probs=228.9
Q ss_pred CCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe
Q 007757 283 DHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 283 ~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s 362 (590)
.|......-+...+||...|+|++++|+ |+++++|+.||+|+|||. ..+-|+.+|..|+..|+.+.|+..|+.++++|
T Consensus 334 VweWqsEsYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~-~SgfC~vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNT-QSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred EEEeeccceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEec-cCceEEEEeccCCCceEEEEEEecCCEEEEee
Confidence 4555666677788899999999999999 999999999999999999 78999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC-cEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 363 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
.||+|+.||+...+..++|..+.+....++..++. +.++++|+.|. .|.+|++.+|+++..+.+|.++|.+++|+|.+
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG 490 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence 99999999999999999999888877666665543 35777777764 79999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc----cccC-
Q 007757 442 RRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK----RFAG- 515 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~----~~~~- 515 (590)
..|+++|.|++|++||+-.. .....+ ...+.+..++|+|+|+.|++++.||.|.+||+........+. ...+
T Consensus 491 ~~LaS~SWDkTVRiW~if~s~~~vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR 568 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFSSSGTVETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGR 568 (893)
T ss_pred CeEEeccccceEEEEEeeccCceeeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccc
Confidence 99999999999999998443 333344 356779999999999999999999999999987655442211 1111
Q ss_pred ----------cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 007757 516 ----------HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 516 ----------~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
.......+.+++|+||.+|++|+....|+||++.++-+++.+
T Consensus 569 ~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 569 KETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred cccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 112356788999999999999999999999999877655544
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-33 Score=287.19 Aligned_cols=329 Identities=20% Similarity=0.349 Sum_probs=256.1
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCC-CEEEEEeC
Q 007757 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYG-HLILSAGM 320 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g-~~L~sgs~ 320 (590)
.+.++.....+.++++++.+++.|...|.| +|--..+.|.|+||.+.|.++.|+|+-. .+|++|..
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VW-------------di~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVW-------------DIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEE-------------EeeCCEEEEEecCCCceEEEEEeCCccchhheeecCC
Confidence 355667777889999999999999999999 4455678999999999999999999732 35889999
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCC----
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD---- 396 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~---- 396 (590)
|+++++||+.....++.++..|.+.|++++|++|+..+++++.|..|.|||+.+.+..+++........+.+.+..
T Consensus 170 D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~ 249 (775)
T KOG0319|consen 170 DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGK 249 (775)
T ss_pred CceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCc
Confidence 9999999996566678889999999999999999999999999999999999765544443322222222222211
Q ss_pred --------------------------------------------------------------------------------
Q 007757 397 -------------------------------------------------------------------------------- 396 (590)
Q Consensus 397 -------------------------------------------------------------------------------- 396 (590)
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence
Q ss_pred ----CCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc----------
Q 007757 397 ----DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---------- 462 (590)
Q Consensus 397 ----~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~---------- 462 (590)
+..+.+++++..+.+++|++.+..+. .+.+|...|.++....+|-+|++||.|+++++|.++...
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 11233444455555555554444333 455788888888855566778888888888888652110
Q ss_pred --------------------------EEEE-------------------eecCCCCcccEEEEcCCCCEEEEEEcCCeEE
Q 007757 463 --------------------------VIKY-------------------ISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 497 (590)
Q Consensus 463 --------------------------~~~~-------------------~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~ 497 (590)
.++. ....|...|++++++|+.++|++||.|.+.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee
Confidence 0000 1123666799999999999999999999999
Q ss_pred EEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEE
Q 007757 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 577 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l 577 (590)
||++... .....+.|| ...+.++.|+|..+.|+++|.|++|+||.+.+..++++|.+|...|..+.|-. ++..|
T Consensus 489 iW~le~~---~l~~vLsGH--~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~ql 562 (775)
T KOG0319|consen 489 IWDLEQL---RLLGVLSGH--TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQL 562 (775)
T ss_pred eecccCc---eEEEEeeCC--ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEE
Confidence 9999843 334678888 45688999999999999999999999999999999999999999999999998 77899
Q ss_pred EEEeCCCcEEEeC
Q 007757 578 ATCGWDGLIKYWD 590 (590)
Q Consensus 578 ~s~g~DG~I~iWD 590 (590)
+||+.||.|+|||
T Consensus 563 iS~~adGliKlWn 575 (775)
T KOG0319|consen 563 ISAGADGLIKLWN 575 (775)
T ss_pred EeccCCCcEEEEe
Confidence 9999999999996
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.6e-32 Score=288.18 Aligned_cols=285 Identities=20% Similarity=0.397 Sum_probs=246.2
Q ss_pred CccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC------------------------------CC
Q 007757 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN------------------------------SG 333 (590)
Q Consensus 284 ~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~------------------------------~~ 333 (590)
..-+|.-+..++..-...++|..|+++ +.+||.|-.|..|++|.+.+ ..
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 344677778888877889999999999 78999999999999999842 11
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEE
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
...+++.||.++|..+.|+|+.++|++||.|++||+|.+.+..++-.+..+. +++.+.|+|. +.+|++++.|++-+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~---GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR---GYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC---ceEEEecCCCceee
Confidence 2345688999999999999999999999999999999999999999888653 4566777765 48999999999999
Q ss_pred EEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 413 vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
+|......+.+.+.+|.+.|.|+.|+|+..++++||.|.+|++||+.++..++.+. +|..+|.+++|+|+|++|++|+.
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeeccc
Confidence 99999999999999999999999999999999999999999999999999988875 69999999999999999999999
Q ss_pred CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------------------
Q 007757 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-------------------- 552 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~-------------------- 552 (590)
||.|.+||+.++..+ ..+.+| .+.+.++.||.+|..|++|+.|.+|++||+..-.
T Consensus 598 d~~I~iWDl~~~~~v---~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLV---KQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENN 672 (707)
T ss_pred CCcEEEEEcCCCcch---hhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCC
Confidence 999999999987655 556677 6789999999999999999999999999985321
Q ss_pred ----EEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007757 553 ----VFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 553 ----~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
++.++..-..+|.++.|.. ..-.|+.
T Consensus 673 ~~~~llgs~~tK~tpv~~l~Ftr-rNl~L~~ 702 (707)
T KOG0263|consen 673 ASSLLLGSFYTKNTPVVGLHFTR-RNLLLAV 702 (707)
T ss_pred CCcceeeeeeecCceEEEEEEec-cceeEEe
Confidence 4455555566888999987 4433333
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4e-32 Score=269.26 Aligned_cols=293 Identities=23% Similarity=0.380 Sum_probs=246.4
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC-CCeeEE--Ee------c----cCCCceeEEEE
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMR--TY------M----GHSKAVRDISF 351 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~--~~------~----~h~~~V~~l~f 351 (590)
.-+|...++.+. |..+|.+.+|+|-...+|++|+.|-+.++|++.. ...+.. .+ . ..+..|++++|
T Consensus 165 ~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred ccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence 347777888887 9999999999998555999999999999999953 111111 01 1 12467999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC
Q 007757 352 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG 430 (590)
Q Consensus 352 spdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~ 430 (590)
+.+|..|++|++||.+++|+.. |..+.++..+ .++..+.|+-. +++|++++-|+++.+||..+++..+.+.-|..
T Consensus 244 n~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~---G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKK---GTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred cCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCC---CCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 9999999999999999999976 5555555443 44556666643 47999999999999999999999999999999
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc
Q 007757 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 510 (590)
+-..+.|.. ...|++++.|+.|+|+.+....++..+.. |.+.|.++.|.|.+.+|++++.|++++||+.......
T Consensus 320 ~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~--- 394 (524)
T KOG0273|consen 320 PALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV--- 394 (524)
T ss_pred CccceEEec-CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch---
Confidence 888899985 45899999999999999999999988875 9999999999999999999999999999998765444
Q ss_pred ccccCcccccceEEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEe
Q 007757 511 KRFAGHIVAGYACQVNFSPDG---------RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg---------~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
..+..| ...|..+.|+|.| ..|++++.|++|++||+..+.++.+|..|..+|.+++|+| ++.++|+|+
T Consensus 395 ~~l~~H--skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs 471 (524)
T KOG0273|consen 395 HDLQAH--SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGS 471 (524)
T ss_pred hhhhhh--ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecC
Confidence 344455 3456678888864 4789999999999999999999999999999999999999 889999999
Q ss_pred CCCcEEEeC
Q 007757 582 WDGLIKYWD 590 (590)
Q Consensus 582 ~DG~I~iWD 590 (590)
.||.|.||+
T Consensus 472 ~dg~V~iws 480 (524)
T KOG0273|consen 472 LDGCVHIWS 480 (524)
T ss_pred CCCeeEecc
Confidence 999999996
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-31 Score=275.79 Aligned_cols=299 Identities=17% Similarity=0.370 Sum_probs=243.1
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe-eEEEeccCCCceeEEEEecCCCEEEEEeC
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-CMRTYMGHSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~~h~~~V~~l~fspdg~~l~s~s~ 363 (590)
-|.|..+.+++.||-..|++|.|+.+ .++|++||.|.+++||.+..... ....+.+|...|..+-|..+...+++.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk 209 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK 209 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec
Confidence 58899999999999999999999999 89999999999999999943222 35678899999999999999999999999
Q ss_pred CCeEEEEECCC-----------------------CcE-----EE----E--cc-CCCCceEEEEecC-------------
Q 007757 364 DKNIKYWDTET-----------------------GQV-----IR----T--FS-TGKIPYVVKLNPD------------- 395 (590)
Q Consensus 364 Dg~I~vWd~~t-----------------------~~~-----~~----~--~~-~~~~~~~~~~~~~------------- 395 (590)
||.|.+|.... ++. .. . +. ......+..+++.
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f 289 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEF 289 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCee
Confidence 99999997651 110 00 0 00 0011111111111
Q ss_pred --------------------------CCCCcEEEEEEcC-CcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEe
Q 007757 396 --------------------------DDKQNILLAGMSD-KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 396 --------------------------~~~~~~lvsg~~d-g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
+..+..++.|+.. |.+.+|+..+...+...++|...+++++++|||+++++|+
T Consensus 290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence 0112344444443 6777777777777777789999999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEc
Q 007757 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
+||.|+|||...+-++.++.. |...|+.+.|+..++.+++.+.||+|+.||+...... ++|.... .....+++..
T Consensus 370 eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~-p~QfscvavD 444 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPE-PIQFSCVAVD 444 (893)
T ss_pred CCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee---eeecCCC-ceeeeEEEEc
Confidence 999999999999999999975 9999999999999999999999999999999765443 4444442 2345579999
Q ss_pred CCCCEEEEEeCCC-cEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 529 PDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs~dg-~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|.|.++++|+.|. .|++|++++|+++-.+.+|.++|.+++|+| .++.|+|++||.+||+||
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWD 506 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEE
Confidence 9999999999775 599999999999999999999999999999 678999999999999997
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.9e-33 Score=268.68 Aligned_cols=268 Identities=24% Similarity=0.468 Sum_probs=228.3
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
..++|+|+.+. ...+++|..|.+|+|||. ++..+++.+.||++.|.|+.|. .+.|++|+.|.+|+|||++++++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~-n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDK-NSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEecc-ccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch
Confidence 56789999995 457999999999999999 7889999999999999999995 56999999999999999999999
Q ss_pred EEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc---eEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007757 378 IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~---~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
+.++..+ ...++.+...+ .++++++.|..|.+||+.+.. +...+.+|..+|+.+.|+ .++++++|.|.+|+
T Consensus 270 l~tlihH-ceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 270 LNTLIHH-CEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred hhHHhhh-cceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 9888544 33344444433 689999999999999998764 344567999999999996 56999999999999
Q ss_pred EEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEE
Q 007757 455 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
+|++.+...++.+. +|...|.|+.+ .++++++|+.|++|++||+..+..+ ..+.|| ..-|.++.| |.+.|
T Consensus 344 vW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL---RvLeGH--EeLvRciRF--d~krI 413 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL---RVLEGH--EELVRCIRF--DNKRI 413 (499)
T ss_pred EEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEeccccHHH---HHHhch--HHhhhheee--cCcee
Confidence 99999999988875 58888887776 6899999999999999999988665 556677 566778888 67789
Q ss_pred EEEeCCCcEEEEeCCCCe---------EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 535 MSGDGEGKCWFWDWKSCK---------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~---------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++|..||+|++||+..+. ++.++..|.+.|..+.|. ...+++++.|.+|-|||
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD---~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD---EFQIISSSHDDTILIWD 475 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec---ceEEEeccCCCeEEEEE
Confidence 999999999999997653 455666799999999994 46899999999999997
No 28
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-32 Score=249.41 Aligned_cols=284 Identities=19% Similarity=0.309 Sum_probs=244.5
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
.++||..+++.|.|+.+ |.+|++|+.|.++.||-. .+++.+-++.||.+.|+|+..+.+.+++++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s-~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYS-LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCC-CcEEEEecCCCCceEEEe-cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 46799999999999999 999999999999999987 6899999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCceEEEEecCCCCCcEEEEEEc-----CCcEEEEECC-------CCceEEEEcccCCceeEEEEeCCC
Q 007757 374 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMN-------TKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 374 t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~-----dg~I~vwDl~-------t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
+|+++..+..+..+..+.|.+.+ +++++... .+.|.++|++ ..++...+..+...++.+-|.|-+
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~g---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGG---NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCC---cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 99999999999999999999876 45555543 3679999998 456677888888999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
..|++|..||.|.+||++++.........|...|+.|.++++..++++++.|.+-++||..+-..+. .+.. ..+
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K---ty~t---e~P 233 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK---TYTT---ERP 233 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE---Eeee---ccc
Confidence 9999999999999999999877777767799999999999999999999999999999998865543 3332 467
Q ss_pred eEEEEEcCCCCEEEEEeCCCc--------------EEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 522 ACQVNFSPDGRFVMSGDGEGK--------------CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~--------------I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
+.+.+++|-...++.|+.... -++|++-..+.+..+++|-++|++++||| ++...++||.||.|+
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVR 312 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEE
Confidence 888999998888777764321 22333333446778899999999999999 677899999999999
Q ss_pred Ee
Q 007757 588 YW 589 (590)
Q Consensus 588 iW 589 (590)
|.
T Consensus 313 ~h 314 (327)
T KOG0643|consen 313 LH 314 (327)
T ss_pred EE
Confidence 84
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.3e-32 Score=285.76 Aligned_cols=247 Identities=24% Similarity=0.485 Sum_probs=217.9
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc--------------------------------EEEEc
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--------------------------------VIRTF 381 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--------------------------------~~~~~ 381 (590)
.++.++..-...++|..|++++.+||.|..|..|++|.+...+ .....
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 4455555566789999999999999999999999999887321 11112
Q ss_pred cCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 007757 382 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~ 461 (590)
.+..+++.+.|+|+. ++|++++.|++|++|.+.+..++-.+.+|..+|.++.|+|.|-+|+|+|.|++.++|.....
T Consensus 449 GH~GPVyg~sFsPd~---rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDR---RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred cCCCceeeeeecccc---cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 233455666777754 78999999999999999999999999999999999999999999999999999999999887
Q ss_pred cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC
Q 007757 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
.+.+.+. .|...+.|+.|||+..|+++||.|.+|++||+.++..+ ..|.|| .+.|.+++|||+|++|++|+.||
T Consensus 526 ~PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V---RiF~GH--~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 526 KPLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV---RIFTGH--KGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred Cchhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEE---EEecCC--CCceEEEEEcCCCceEeecccCC
Confidence 7776665 69999999999999999999999999999999988665 567888 68899999999999999999999
Q ss_pred cEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 542 KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 542 ~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.|.+||+.+++++..+.+|.+.|.++.|+. ++..||+||.|.+|++||
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWD 647 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999999999 788999999999999998
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.3e-31 Score=246.40 Aligned_cols=256 Identities=23% Similarity=0.374 Sum_probs=221.5
Q ss_pred CccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC--C---eeEEEeccCCCceeEEEEecCCCEE
Q 007757 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS--G---KCMRTYMGHSKAVRDISFCNDGTKF 358 (590)
Q Consensus 284 ~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~--~---~~~~~~~~h~~~V~~l~fspdg~~l 358 (590)
|.-....-+|.+.-.+..|..++|+|. |+++|+|+.|+...||++... . +..+.+.+|.+.+.|+.|.+| ..|
T Consensus 82 WDs~TtnK~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~i 159 (343)
T KOG0286|consen 82 WDSFTTNKVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHI 159 (343)
T ss_pred EEcccccceeEEecCceeEEEEEECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-Cce
Confidence 344555666777788889999999999 999999999999999999422 1 456779999999999999974 579
Q ss_pred EEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEe
Q 007757 359 LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~ 438 (590)
+++|.|.++.+||+++++.+..|.. |..-++++...+...+.|++|+.|+..++||+|.+..++.|.+|..-|++++|.
T Consensus 160 lT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff 238 (343)
T KOG0286|consen 160 LTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF 238 (343)
T ss_pred EecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEc
Confidence 9999999999999999999999964 444444444444456899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcc
Q 007757 439 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
|+|.-|++|++|+++++||++....+..+.. ....+|++++|+..|++|++|..|..+.+||.-.+... ..+.||
T Consensus 239 P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v---g~L~GH- 314 (343)
T KOG0286|consen 239 PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV---GVLAGH- 314 (343)
T ss_pred cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceE---EEeecc-
Confidence 9999999999999999999999887776653 34567999999999999999999999999998766554 456678
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
...|.++..+|||.-|++|+.|..|+||.
T Consensus 315 -eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 -ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 57799999999999999999999999994
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2e-30 Score=297.71 Aligned_cols=286 Identities=15% Similarity=0.285 Sum_probs=229.9
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC---CC----eeEEEeccCCCceeEEEEec-CCCEEEEEeCCCe
Q 007757 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SG----KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 366 (590)
Q Consensus 295 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~---~~----~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~ 366 (590)
+.+|.+.|++++|+|+ +++|++|+.|+.|+||++.. .+ .+...+. +...|.+++|++ ++.+|++++.||.
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 4459999999999999 89999999999999999732 11 1223333 356799999988 5789999999999
Q ss_pred EEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEe-CCCCEE
Q 007757 367 IKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-DSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~-p~~~~l 444 (590)
|+|||+.+++.+..+..+ ..+..+.|++. .+.+|++|+.|+.|++||++++..+..+..+ ..|.++.|+ +++.+|
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSL 633 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEE
Confidence 999999999988887654 34556666653 3478999999999999999999888888754 689999995 568999
Q ss_pred EEEeCCCcEEEEECCCCcE-EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce---eecccccccCccccc
Q 007757 445 VTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAG 520 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~ 520 (590)
++|+.||.|++||++.... +..+ ..|...|.++.|. ++.+|++++.|+.|++||++... .......+.+| ..
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~ 709 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TN 709 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CC
Confidence 9999999999999987653 3333 4688899999997 67899999999999999997532 11223456666 45
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-------------ecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-------------KCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l-------------~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
.+..++|+|++.+|++|+.||.|++|+.....++..+ ..|...|.+++|+| ++.+|++|+.||.|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~ 788 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIK 788 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEE
Confidence 6778999999999999999999999998766544332 22445799999999 778999999999999
Q ss_pred EeC
Q 007757 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
|||
T Consensus 789 i~~ 791 (793)
T PLN00181 789 ILE 791 (793)
T ss_pred EEe
Confidence 997
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-30 Score=240.55 Aligned_cols=286 Identities=20% Similarity=0.396 Sum_probs=232.8
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC--CCeeEEEe-ccCCCceeEEEEecCCCEEEEEeCCCe
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN--SGKCMRTY-MGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~--~~~~~~~~-~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
-.+++++||.+.|..++|+|-.|.+|+|||.|..|+||+... +-.+...+ .+|...|++++|+|.|++|++||.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 356889999999999999998677999999999999999842 12333333 369999999999999999999999999
Q ss_pred EEEEECCCC--cEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC---ceEEEEcccCCceeEEEEeCC
Q 007757 367 IKYWDTETG--QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 367 I~vWd~~t~--~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~---~~~~~~~~h~~~V~~i~~~p~ 440 (590)
+.||.-..+ +++..+..+ ..+.+++|+.++ ++|++++.|+.|.+|.+..+ ++...+..|..-|..+.|+|.
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG---~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASG---NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCC---CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 999987654 566666654 345677777654 79999999999999999754 577788999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC---CcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcc
Q 007757 441 NRRFVTSSDDKSLRVWEFGI---PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~---~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
...|+++|.|.+|++|.-.. -.+...+ ..|...|.+++|++.|..|++++.|++|+||-....- . +.
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~--------~-~~ 231 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL--------S-GM 231 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc--------c-hh
Confidence 99999999999999998652 2345555 4577799999999999999999999999999865321 1 11
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------eEE-EEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC------KVF-RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~------~~~-~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
....+..+.|. ...|++++.|+.|++|.-... +++ ..-.+|...|+++.|.|....+|++||.||.|++|.
T Consensus 232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 232 HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 23556668887 458999999999999976542 122 233579999999999996688999999999999993
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.9e-32 Score=249.58 Aligned_cols=283 Identities=23% Similarity=0.405 Sum_probs=252.3
Q ss_pred EEecCCCCCeeEEEEcCC--CCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 293 HTWSGHTKGVSAIRFFPK--YGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~--~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
.+..||+.+|..++|+|- .|-+|++++.||.-.+-+- .++.-+.+|.+|.+.|+..+++.+...-++++.|=+-+||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g-~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG-DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccC-CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 356799999999999872 3889999999999888876 6889999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeCCCCEEEEEeC
Q 007757 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
|.-+|..+..|...+.+..+.|..+. +.|++|+.+..+++||++.. .+..++.+|.+.|..+.|+...+.|++.++
T Consensus 87 ~a~tgdelhsf~hkhivk~~af~~ds---~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 87 DAVTGDELHSFEHKHIVKAVAFSQDS---NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhhhheeeeEEecccc---hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 99999999999999999999988765 67999999999999999876 466788999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|++||+||.+++..++.+. ..++|+++.++++|.+|.++ ..+.|.+||..+-..+.... ....|.+..++|
T Consensus 164 d~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k------~P~nV~SASL~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK------MPCNVESASLHP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc------CccccccccccC
Confidence 9999999999999998885 56789999999999887764 46789999998754443222 234567789999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEE-ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l-~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+..++++|+.|+.++.||..++..+..+ ++|.++|.|+.|+| ++...++|+.||+|+||
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLW 294 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEE
Confidence 9999999999999999999999999886 89999999999999 78899999999999999
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=259.08 Aligned_cols=295 Identities=25% Similarity=0.429 Sum_probs=249.9
Q ss_pred CCcceeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEE--------EeccCCCceeEEEEecCCCE
Q 007757 287 IPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR--------TYMGHSKAVRDISFCNDGTK 357 (590)
Q Consensus 287 ~p~~~v~~l~-gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~--------~~~~h~~~V~~l~fspdg~~ 357 (590)
.|..+.++++ |...-+-|..|+|+ |++|++|+.||.|.+|+. .+++..+ .+.-+..+|.|++|+.|...
T Consensus 200 ~Pt~l~r~IKFg~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny-~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 200 YPTQLARSIKFGQKSHVECARFSPD-GQYLVSGSVDGFIEVWNY-TTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred chHHhhhheecccccchhheeeCCC-CceEeeccccceeeeehh-ccchhhhhhhhhhhcceeecccceEEEeecccHHH
Confidence 4555555554 56677999999999 999999999999999998 4555433 34568899999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEccCCCC--ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEE
Q 007757 358 FLTASYDKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 435 (590)
Q Consensus 358 l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i 435 (590)
|++|+.||.|+||.+++|.|++.|...+. +.++.|+.++ ..+++++.|.++++.-+.+|+++.++.+|.+.|+..
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~---SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN---SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc---chhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 99999999999999999999999986554 4455555544 468999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccc
Q 007757 436 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 436 ~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
.|.++|.++++++.||+|++|+..+..++.++.. +...+|.++..-|. ...+++|...++|+|.++... .+..+ .
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsf--s 431 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSF--S 431 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeee--c
Confidence 9999999999999999999999999988887764 34557888887775 467888999999999998653 22222 1
Q ss_pred cCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 514 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 514 ~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.|..-.+...+.++||.|.++.+.+.|+.++.|.+.+|++..++..|...|..++-+| ..++|++-+.||.+++|-
T Consensus 432 SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 2333345556688999999999999999999999999999999999999999999999 788999999999999993
No 35
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.1e-30 Score=252.91 Aligned_cols=288 Identities=20% Similarity=0.400 Sum_probs=239.9
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCC---EEEEEeCC
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT---KFLTASYD 364 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~---~l~s~s~D 364 (590)
|++..+.+ -|...|.+|... +..|++|+.||.++|||. .|++..++.||.++|.+++|..... .|++++.|
T Consensus 95 aP~pl~~~-~hdDWVSsv~~~---~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D 168 (423)
T KOG0313|consen 95 APKPLQCF-LHDDWVSSVKGA---SKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD 168 (423)
T ss_pred CCCccccc-cchhhhhhhccc---CceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecCC
Confidence 33333333 588999999887 469999999999999997 8999999999999999998876433 59999999
Q ss_pred CeEEEEECCCCcEEEEcc---CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC------------------------
Q 007757 365 KNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN------------------------ 417 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~------------------------ 417 (590)
.++++|-++.+....... .+|...+.++.... .+..+++|+.|..|.+|+..
T Consensus 169 qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 169 QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred ceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 999999998776433221 14444444443332 23789999999999999932
Q ss_pred -CCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007757 418 -TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496 (590)
Q Consensus 418 -t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I 496 (590)
++.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+. ...++.++.++|..++|++|+.|..|
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCce
Confidence 2235667889999999999998 6799999999999999999998888774 56789999999999999999999999
Q ss_pred EEEEccCceeecccccccCcccccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe-EEEEEecCCCCEEEEEEcCCCC
Q 007757 497 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~-~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
++||.+++.--.....+.+| ...|..+.|+|... .|++|+.|+++++||+++.+ ++..+.+|...|.++.|.. +
T Consensus 325 rl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~ 400 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--G 400 (423)
T ss_pred eecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--C
Confidence 99999988766667788888 45899999999655 57899999999999999988 9999999999999999985 5
Q ss_pred CEEEEEeCCCcEEEe
Q 007757 575 SKVATCGWDGLIKYW 589 (590)
Q Consensus 575 ~~l~s~g~DG~I~iW 589 (590)
.+|++||.|.+|+|+
T Consensus 401 ~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 401 GLIVSGGADNKLRIF 415 (423)
T ss_pred ceEEeccCcceEEEe
Confidence 689999999999986
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1e-30 Score=271.75 Aligned_cols=290 Identities=20% Similarity=0.335 Sum_probs=245.9
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
.+++..+-|..+.|..++|--...++|+.++..+.+++|++ .+..+ ..+.||...|.++....+|-+|+||+.|.+++
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~-~~~~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL-PTSYC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEec-CCCce-EEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 45667788999999999987555799999999999999988 34444 38899999999999666788999999999999
Q ss_pred EEECCCCcEEEEc---cCCC--CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc-----eEE----EEcccCCceeE
Q 007757 369 YWDTETGQVIRTF---STGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-----ITQ----EYDQHLGAVNT 434 (590)
Q Consensus 369 vWd~~t~~~~~~~---~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~-----~~~----~~~~h~~~V~~ 434 (590)
+|.++.+...... ..++ .+.++++ ......+|++++.|++|++|++...+ .+. ....|...|+|
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeee--cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 9988554332211 1233 3444555 33455899999999999999998622 111 22469999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccccc
Q 007757 435 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 435 i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
++++|+...|++||.|++.+||++........+. +|...+.++.|+|..+.++++|.|++|+||.+.+..++ +++.
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl---kT~e 544 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL---KTFE 544 (775)
T ss_pred eEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccceee---eeec
Confidence 9999999999999999999999999777776665 69999999999999999999999999999999987655 7788
Q ss_pred CcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 515 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
|| ...|..+.|-.+|..|++++.||-|++|+++++.|+.++.+|...|.+++.+| ...+++|||.||.|.+|
T Consensus 545 GH--~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 545 GH--TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP-LLDMFVTGGGDGRIIFW 616 (775)
T ss_pred Cc--cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC-ccceeEecCCCeEEEEe
Confidence 88 56688899999999999999999999999999999999999999999999999 66699999999999999
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.7e-31 Score=252.13 Aligned_cols=281 Identities=18% Similarity=0.373 Sum_probs=245.5
Q ss_pred CCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 007757 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~ 325 (590)
......+.+.-.+...+..|+..+.| .+...++...++||+..|..|+|+.. |.+|++++.|-.++
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~-------------D~~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVF-------------DTETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSAK 175 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEE-------------EccchhhhhhhhccccceeEEEEecC-ccEEEecCCccchh
Confidence 34444566666677777888888888 45667788999999999999999998 99999999999999
Q ss_pred EEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEE
Q 007757 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG 405 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg 405 (590)
+||.....++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.+|-++.++..+.. .+-.+.+.. .+.+++++
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~-DGti~As~ 253 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQ-DGTIIASC 253 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecC-CeeEEEec
Confidence 9999666789999999999999999999999999999999999999999999999976544 443444443 34799999
Q ss_pred EcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC---------------CCEEEEEeCCCcEEEEECCCCcEEEEeecC
Q 007757 406 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---------------NRRFVTSSDDKSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 406 ~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~---------------~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~ 470 (590)
+.|.+|++|-+.++++...+..|.-+|-|++|.|. +.++++++.|++|++||+.++.++..+. +
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-g 332 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-G 332 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-c
Confidence 99999999999999999999999999999999763 2589999999999999999999998886 5
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
|...|..++|+|.|+||+++..|+++++||+++..++..+. .| ...+++++|+.+..++++|+-|..+++|.-
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~---ah--~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE---AH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC---CC--cceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999999999987775443 44 466889999999999999999999999963
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7e-30 Score=265.48 Aligned_cols=317 Identities=24% Similarity=0.420 Sum_probs=242.4
Q ss_pred CCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC
Q 007757 253 EDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS 332 (590)
Q Consensus 253 ~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~ 332 (590)
.+...+++-+-.|..+|.|-. .......++.||...|+++.|... |.+|+|||.|+.|.+||+ -.
T Consensus 74 ~~d~l~lAVGYaDGsVqif~~-------------~s~~~~~tfngHK~AVt~l~fd~~-G~rlaSGskDt~IIvwDl-V~ 138 (888)
T KOG0306|consen 74 SDDILLLAVGYADGSVQIFSL-------------ESEEILITFNGHKAAVTTLKFDKI-GTRLASGSKDTDIIVWDL-VG 138 (888)
T ss_pred cCCcceEEEEecCceEEeecc-------------CCCceeeeecccccceEEEEEccc-CceEeecCCCccEEEEEe-cc
Confidence 344455567777889998833 333567799999999999999999 999999999999999999 45
Q ss_pred CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC-----------------------------
Q 007757 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST----------------------------- 383 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~----------------------------- 383 (590)
..-+..+.||...|+.+-|..+.++|+++|.|+.|++||+++..|..+.-.
T Consensus 139 E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 139 EEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred ceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 566677889999999888888788888888999999998874332221000
Q ss_pred --------------------------------------------------------------------------------
Q 007757 384 -------------------------------------------------------------------------------- 383 (590)
Q Consensus 384 -------------------------------------------------------------------------------- 383 (590)
T Consensus 219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e 298 (888)
T KOG0306|consen 219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE 298 (888)
T ss_pred ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence
Q ss_pred ---------------------CCCceEEEEecCCC---------------------------------------------
Q 007757 384 ---------------------GKIPYVVKLNPDDD--------------------------------------------- 397 (590)
Q Consensus 384 ---------------------~~~~~~~~~~~~~~--------------------------------------------- 397 (590)
......+.+.+.+.
T Consensus 299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs 378 (888)
T KOG0306|consen 299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS 378 (888)
T ss_pred cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence 00000000000000
Q ss_pred ----CCcEEEEEEcCCcEEEEECCCCceEEE----------------------------------------EcccCCcee
Q 007757 398 ----KQNILLAGMSDKKIVQWDMNTKEITQE----------------------------------------YDQHLGAVN 433 (590)
Q Consensus 398 ----~~~~lvsg~~dg~I~vwDl~t~~~~~~----------------------------------------~~~h~~~V~ 433 (590)
..+.++..+..+.|.+|+..+.+++++ +..|.+.|.
T Consensus 379 l~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW 458 (888)
T KOG0306|consen 379 LCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIW 458 (888)
T ss_pred EEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccccee
Confidence 012233344456666676665554443 346999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCc-----EEEEee------cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPV-----VIKYIS------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~-----~~~~~~------~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
+++.+|++..+++||.|.+|++||+.... ..+.+. ......|.|+.++|++++|+++-.|++|+||-+.
T Consensus 459 si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 99999999999999999999999974211 111111 1234568999999999999999999999999987
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
+- ..+..+.|| .-+|.++.+|||++++++|+.|.+|+||-+.-|.|-+.+-+|...|.++.|.| ...++.|||.
T Consensus 539 tl---KFflsLYGH--kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gK 612 (888)
T KOG0306|consen 539 TL---KFFLSLYGH--KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGK 612 (888)
T ss_pred ce---eeeeeeccc--ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecC
Confidence 73 334667888 56799999999999999999999999999999999999999999999999999 7889999999
Q ss_pred CCcEEEeC
Q 007757 583 DGLIKYWD 590 (590)
Q Consensus 583 DG~I~iWD 590 (590)
||.|+.||
T Consensus 613 D~kvKqWD 620 (888)
T KOG0306|consen 613 DGKVKQWD 620 (888)
T ss_pred cceEEeec
Confidence 99999997
No 39
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=8.1e-31 Score=256.25 Aligned_cols=294 Identities=20% Similarity=0.356 Sum_probs=248.3
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe--eEEEeccCCCceeEEEEecCCCEEEEEe
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s 362 (590)
.-+|.+....+..|.+.|..+.|-++ ...|++|+.|..|++|++ ...+ .+.++.|..+.|+++.|.+++.++++++
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v-~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNV-LGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred cccchhhhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhc-ccchhhhhhhhhccCCCcceeeecCCCceEEeec
Confidence 45788999999999999999999998 789999999999999999 3444 6778889999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCC
Q 007757 363 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
.|+.+++|++...+...++.. |...+.+....-.. ..+++|+.|.+|++||+....+..++. ....++.|... ..
T Consensus 239 ~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~ 313 (459)
T KOG0288|consen 239 NDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--IS 313 (459)
T ss_pred CCCceeeeeccchhhhhhhcc-cccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ce
Confidence 999999999999999999877 43333333332222 239999999999999999988777764 44566777765 56
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccce
Q 007757 443 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
.+++|..|+.|++||++...+...+. ..+.|+++.+++++..|.+++.|..+.++|+++......+.. .+...+...
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA-~g~k~asDw 390 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA-EGFKCASDW 390 (459)
T ss_pred eeeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec-ccccccccc
Confidence 78999999999999999998888774 556999999999999999999999999999998655443332 222334457
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+| .++.|++++.++.+.+|
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 7899999999999999999999999999999999886554 499999999 78899999999999999
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=267.60 Aligned_cols=284 Identities=20% Similarity=0.331 Sum_probs=246.8
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
.|...+..|-.|+|+|. ..+++++-..|.|++||. .-+.++..|..|.++|+.++|+|++.+|+||+.|-.|+||+..
T Consensus 4 kfEskSsRvKglsFHP~-rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhhcccccccceecCCC-CCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 35566778999999999 999999999999999999 7899999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCc
Q 007757 374 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 374 t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+.+|+.++..+- .+..+.|++. -..+++++.|.+|+||+..+++++..+.+|..-|.|..|+|....++++|-|.+
T Consensus 82 ~rrclftL~GHlDYVRt~~FHhe---yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHE---YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred cceehhhhccccceeEEeeccCC---CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence 999998885442 2334444443 268999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCC----------------------------CcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 453 LRVWEFGI----------------------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 453 I~iwdl~~----------------------------~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
|+|||+.. ...++.+..+|...|..++|||.-..|++|+.|..|++|.+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 99999841 12355666789999999999999999999999999999998654
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
. .....+..|| ...|.++-|+|...+|++.+.|++|++||+...+.+.+++...+..+.++-+| ..++++.|-+.|
T Consensus 239 K-aWEvDtcrgH--~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 239 K-AWEVDTCRGH--YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLFAAGHDSG 314 (1202)
T ss_pred c-ceeehhhhcc--cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-CcceeeeecCCc
Confidence 3 3445667788 46688999999999999999999999999999999999998788899999999 677776665544
Q ss_pred cE
Q 007757 585 LI 586 (590)
Q Consensus 585 ~I 586 (590)
.+
T Consensus 315 m~ 316 (1202)
T KOG0292|consen 315 MI 316 (1202)
T ss_pred eE
Confidence 43
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-29 Score=257.82 Aligned_cols=286 Identities=20% Similarity=0.352 Sum_probs=256.5
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
..+++..|+..|.||.|+|. ..+++++-..|.|.|||. ++...++.+.-..-+|++..|-..-+++++|+.|..|+||
T Consensus 5 ~krk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWny-etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNY-ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhhHhhccCCceeeeecCCC-CceEEEeeecCeeEEEec-ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 34566779999999999999 899999999999999999 7888999999889999999999999999999999999999
Q ss_pred ECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeC-CCCEEEEE
Q 007757 371 DTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVTS 447 (590)
Q Consensus 371 d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p-~~~~l~s~ 447 (590)
+..+++.+..|..+ ..+.++..+|.. .++++++.|-.|++||.... .+.+++.+|..-|.+++|+| |.+.|+++
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 99999999999764 446677777755 58999999999999999876 78899999999999999998 46789999
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCC--CEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEE
Q 007757 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT--NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
|-|++|+||.+..+.+..++. +|...|.|+.+-+.| .+|++|+.|..|+|||..+..++ .++.|| ...|..+
T Consensus 160 sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV---~TLeGH--t~Nvs~v 233 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV---QTLEGH--TNNVSFV 233 (794)
T ss_pred eccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH---HHhhcc--cccceEE
Confidence 999999999999999888886 799999999998755 69999999999999999987655 667788 4557889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 526 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
+|+|.-.++++|+.||+++||+..+-++..++.-.-..|.|++-.+ +...++.|.+.|.|.|
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 9999999999999999999999999999999988888999999998 6677899988888754
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.8e-29 Score=231.50 Aligned_cols=283 Identities=22% Similarity=0.333 Sum_probs=244.7
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeE--EEeccCCCceeEEEEec-CCCEEEEEeCCCeEEE
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM--RTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKY 369 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~v 369 (590)
+.+++|.+.|.+|+|+-+ |..|++|+.|+++.+|++. ..+.. ..+.+|.+.|-.++|+| ....|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e-~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLE-RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEec-chhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 567799999999999999 9999999999999999994 33333 24678999999999998 6779999999999999
Q ss_pred EECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC
Q 007757 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
||++.++++..+........+.+.|++ .+++++..|..|.+.|.++.+.+...+ ....++-++|+-++..|+....
T Consensus 92 wd~r~~k~~~~i~~~~eni~i~wsp~g---~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENINITWSPDG---EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred EEeccCcEEEEeeccCcceEEEEcCCC---CEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecC
Confidence 999999999999988888889999876 589999999999999999988777664 4567888999988888888888
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
.|.|.|..+...+++..+. .|.....||.|+|+|++||+|+.|..+.+||+....+... +..+ .-+|..+.||-
T Consensus 168 lG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~---isRl--dwpVRTlSFS~ 241 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC---ISRL--DWPVRTLSFSH 241 (313)
T ss_pred CceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee---eccc--cCceEEEEecc
Confidence 8999999998888887775 5888889999999999999999999999999986544433 3333 45678899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCC---------CcEEEe
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD---------GLIKYW 589 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D---------G~I~iW 589 (590)
||++||+|+.|..|-|=++.+|..+..++ +.++...++||| ...+||-++.| |.|+||
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCCCCccccccceeEEe
Confidence 99999999999999999999999999988 678889999999 67788877765 567765
No 43
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=250.76 Aligned_cols=298 Identities=20% Similarity=0.352 Sum_probs=233.6
Q ss_pred cCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeE---EEec-cCCCceeEEEEecCCCEEEEE
Q 007757 286 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM---RTYM-GHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 286 ~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~---~~~~-~h~~~V~~l~fspdg~~l~s~ 361 (590)
.+|..+--.+++|+..|+++++.|. |-.|+|||.|-+|++||+..-.... +.+. .....|+++.|++.|..|++.
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE
Confidence 4677777789999999999999999 9999999999999999994322222 2222 345679999999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEcc-----------CCCCce--EEEEecCCCCCcEEEEEEcCCcEEEEECCCCc-eEEEEc-
Q 007757 362 SYDKNIKYWDTETGQVIRTFS-----------TGKIPY--VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYD- 426 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~-----------~~~~~~--~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~-~~~~~~- 426 (590)
+....++|+|-.....+.... .+|... +.+|+| .....|++++.||++++||+...+ ..+.+.
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP--~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP--DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc--CcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 999999999976544433322 234333 455555 445789999999999999997653 333332
Q ss_pred ----ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC--cEEEEeecCCCC--cccEEEEcCCCCEEEEEEcCCeEEE
Q 007757 427 ----QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMH--SMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 427 ----~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~~~--~i~~i~~sp~g~~l~s~s~dg~I~i 498 (590)
+..-++++++|++++++|++|+.||+|.+|+.+.. .+...+...|.. .|+||+|+++|++|++-+.|+.+++
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 23447899999999999999999999999998543 334445556766 8999999999999999999999999
Q ss_pred EEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCC
Q 007757 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 572 (590)
||++..... +....+....-.-+.++|||+.++|++|.+ .|.++|||..+...+.++......|..|.|||
T Consensus 391 WDLrq~kkp--L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp- 467 (641)
T KOG0772|consen 391 WDLRQFKKP--LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP- 467 (641)
T ss_pred eeccccccc--hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc-
Confidence 999875432 233334333444567899999999999864 57899999999999999988888999999999
Q ss_pred CCCEEEEEeCCCcEEEe
Q 007757 573 EQSKVATCGWDGLIKYW 589 (590)
Q Consensus 573 ~~~~l~s~g~DG~I~iW 589 (590)
.-+.|+.|+.||+++||
T Consensus 468 kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred hhhheeeecCCCceEEE
Confidence 55667777789999885
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.6e-30 Score=260.23 Aligned_cols=245 Identities=22% Similarity=0.427 Sum_probs=220.5
Q ss_pred EEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc-eEEEEecCCCCCcEEEEEEcCCcEEEEE
Q 007757 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~vwD 415 (590)
+++..|+..|.++.|+|...+++++-++|.|.||+.++...++.|.....+ ....|.. ..+.+++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia---RknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA---RKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee---ccceEEEecCCceEEEEe
Confidence 455668999999999999999999999999999999999999999765443 4445544 337899999999999999
Q ss_pred CCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCC
Q 007757 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDN 494 (590)
Q Consensus 416 l~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg 494 (590)
..+++.+..|..|..-|+||+.+|...+++++|+|-+|++||+...-.......+|.+.|.+++|.|. .+.|++++.|+
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 99999999999999999999999999999999999999999999988888888899999999999995 67999999999
Q ss_pred eEEEEEccCceeecccccccCcccccceEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCC
Q 007757 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd--g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 572 (590)
+|++|.+.+.... .++.+| ...|.+++|-+. ..||++|+.|..|+|||.++..|++++.+|...|..+.|+|
T Consensus 164 TVKVWslgs~~~n---fTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp- 237 (794)
T KOG0276|consen 164 TVKVWSLGSPHPN---FTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP- 237 (794)
T ss_pred cEEEEEcCCCCCc---eeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-
Confidence 9999999775443 556777 456888999774 46999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEeC
Q 007757 573 EQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 573 ~~~~l~s~g~DG~I~iWD 590 (590)
.-.+++|||.||+||||+
T Consensus 238 ~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWN 255 (794)
T ss_pred CCcEEEEecCCccEEEec
Confidence 788999999999999995
No 45
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=238.11 Aligned_cols=294 Identities=20% Similarity=0.332 Sum_probs=244.7
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC-----------------CCeeEEEeccCCCceeEEEEec
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-----------------SGKCMRTYMGHSKAVRDISFCN 353 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~-----------------~~~~~~~~~~h~~~V~~l~fsp 353 (590)
....+..|.+++.+-+|+|+ |.++++|+.|..|+|.|+.. ....++++..|...|+++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34567899999999999999 99999999999999999841 1257889999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEE---EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE---cc
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVI---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQ 427 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~---~~ 427 (590)
....|++|+.|++|+++|....... +.|...+...++.|+|.+ .++++|.....+++||+.+-++...- .+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG---efllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG---EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC---ceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999765433 345556777888888876 58999999999999999998765543 46
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC-cccEEEEcCCCCEEEEEEcCCeEEEEEccCcee
Q 007757 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 506 (590)
|.+.|+++.+++.++..+++|.||.|+|||--+..++..+...|.+ .|.+..|..+++|+++.+.|..+++|.+.++..
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 8999999999999999999999999999999999999998877765 588899999999999999999999999998876
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEe-cCCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
+.....-........-+...|+....|++.-+. .+.++-||.++...+..+. +|.+.|..+.-+| ...-++|||.|-
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDF 418 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccc
Confidence 643322110011112234567777788877663 5789999999987766554 7999999999999 667899999999
Q ss_pred cEEEe
Q 007757 585 LIKYW 589 (590)
Q Consensus 585 ~I~iW 589 (590)
.+|+|
T Consensus 419 raRFW 423 (430)
T KOG0640|consen 419 RARFW 423 (430)
T ss_pred eeeee
Confidence 99999
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=243.92 Aligned_cols=247 Identities=21% Similarity=0.362 Sum_probs=220.0
Q ss_pred CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCc
Q 007757 332 SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 332 ~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
..++.+.+.+|.+.|+|+++.|...+|++|+.|++|+|||+.+|++..++..+ ....-+.++.-. .++++++.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH---pYlFs~gedk~ 216 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH---PYLFSAGEDKQ 216 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC---ceEEEecCCCe
Confidence 44667788999999999999999999999999999999999999999888643 334455665533 68999999999
Q ss_pred EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007757 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~ 490 (590)
|+.||+...+.++.|.+|.+.|.|+..+|.-..|++|+.|.+++|||+++...+..+. +|..+|.++.+.|....+++|
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCCceEEe
Confidence 9999999999999999999999999999999999999999999999999999988885 599999999999999999999
Q ss_pred EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEc
Q 007757 491 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~s 570 (590)
+.|++|++||++.+..+. .+..| ...+.+++.+|....+++++.| .|+-|++..+..+..+.+|...|.+++..
T Consensus 296 S~D~tvrlWDl~agkt~~---tlt~h--kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMI---TLTHH--KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred cCCceEEEeeeccCceeE---eeecc--cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec
Confidence 999999999999876553 33344 4568889999999999999887 69999999999999999999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEeC
Q 007757 571 PLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 571 p~~~~~l~s~g~DG~I~iWD 590 (590)
. + .++++|++.|.|.+||
T Consensus 370 s-D-~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 370 S-D-GVLVSGGDNGSIMFWD 387 (460)
T ss_pred c-C-ceEEEcCCceEEEEEe
Confidence 7 3 4899999999999997
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=7.7e-28 Score=241.69 Aligned_cols=294 Identities=15% Similarity=0.290 Sum_probs=241.4
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCee-EEEeccCCCceeEEEEecCCCEEEEEeCC--
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC-MRTYMGHSKAVRDISFCNDGTKFLTASYD-- 364 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~-~~~~~~h~~~V~~l~fspdg~~l~s~s~D-- 364 (590)
....+..+..|...++-.+|+|. |.++++|...|+|+|||....... ...++...++|.+|+|+.++++|+..+..
T Consensus 48 ~~~~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre 126 (603)
T KOG0318|consen 48 NPASVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE 126 (603)
T ss_pred CccceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcc
Confidence 34456788999999999999999 899999999999999999654443 44577788999999999999999988753
Q ss_pred --CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCC
Q 007757 365 --KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 365 --g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
|.+.+|| +|..+..+..+ ...+..+...+.....+++|+.|+.|.+|+=.--+...++..|..-|+|+.|+|+|.
T Consensus 127 rfg~~F~~D--SG~SvGei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~ 203 (603)
T KOG0318|consen 127 RFGHVFLWD--SGNSVGEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS 203 (603)
T ss_pred ceeEEEEec--CCCccceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC
Confidence 3455555 56666666443 333333333345557899999999999999777777778889999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee--cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccccc
Q 007757 443 RFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
+|++++.||+|.+||-.++..+..+. .+|.+.|.+++|+|++..|++++.|.+++|||+.+......+.. .... ..
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~-~~~v-~d 281 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM-GSTV-ED 281 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec-CCch-hc
Confidence 99999999999999999999888886 37899999999999999999999999999999988755543332 2221 22
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.-..+-|. ...|++.+.+|.|.+++...+.++..+.+|...|+++..+| ++.+|++|+.||.|.-||
T Consensus 282 qqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 282 QQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWD 348 (603)
T ss_pred eEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEe
Confidence 22234454 56899999999999999999999999999999999999999 668999999999999997
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=262.47 Aligned_cols=281 Identities=23% Similarity=0.439 Sum_probs=233.5
Q ss_pred cccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 007757 250 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
..+.....+......|..++.|...... + .+.+.+.+|...|++++|+|+ +.++++|+.|++|+|||+
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~-------~----~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIK-------S----NLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeeccccc-------c----hhhccccccccceeeeEECCC-CcEEEEecCCceEEEeec
Confidence 3455555556777788888888662211 0 466777899999999999999 899999999999999999
Q ss_pred cCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC-ceEEEEecCCCCCcEEEEEEcC
Q 007757 330 VNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 330 ~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~d 408 (590)
...+.+++++.+|...|++++|+|+|+++++|+.|++|+|||+++++++..+..+.. +..+.+.+++ ++|++++.|
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~---~~l~s~s~d 309 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG---NLLVSASYD 309 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC---CEEEEcCCC
Confidence 666799999999999999999999999999999999999999999999999987764 4456666544 789999999
Q ss_pred CcEEEEECCCCc--eEEEEcccCCc--eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC--cccEEEEcC
Q 007757 409 KKIVQWDMNTKE--ITQEYDQHLGA--VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--SMPSISLHP 482 (590)
Q Consensus 409 g~I~vwDl~t~~--~~~~~~~h~~~--V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~--~i~~i~~sp 482 (590)
+.|++||+.++. ++..+..+... ++++.|+|++.+|++++.|+.+++||++.......+...... .+.+...++
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence 999999999998 56677666555 999999999999999999999999999988888777643332 444555678
Q ss_pred CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe--CCCcEEEEeCC
Q 007757 483 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWK 549 (590)
Q Consensus 483 ~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~ 549 (590)
.+.++++++.|+.|.+|++.+...+ ..+.+|. ...+..+.++|..+++++++ .|+.|++|...
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~---~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGIL---QRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchh---hhhcCCC-CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 8999999999999999999875444 4455554 46678899999999999998 78899999753
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=253.21 Aligned_cols=254 Identities=19% Similarity=0.326 Sum_probs=215.0
Q ss_pred CccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCC-CceeEEEEecCCCEEEEEe
Q 007757 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 284 ~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s 362 (590)
|+-.....-..++.|..+|.++.|+++ +.+++||+.+|.|++|+. ....+..+..|. ..|++++|+|+...|++||
T Consensus 123 WNg~~fnFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqp--nmnnVk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 123 WNGTSFNFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQP--NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred ecCceeeHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEeccc--chhhhHHhhHhhhhhhheeccCCCCceeEEec
Confidence 444333444556799999999999999 999999999999999997 445555565555 9999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 363 YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
.||+|+|||....+..+.+..+ -.+.++.|+|.. .++++|+.|..|++||.+++.++.++..|...|..+.|++++
T Consensus 200 dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k---gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~ 276 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK---GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG 276 (464)
T ss_pred CCCeEEEEeccCCchhheeccCCCCcceeccCCcc---ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC
Confidence 9999999999888776666543 456678888754 689999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccccCccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
++|+++|.|..++++|+++.+.+..+. .|...++++.|+|- ..+|.+|+.||.|..|.+.....+. . .++.+..
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~--~--i~~AHd~ 351 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG--E--IPPAHDG 351 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEecccccccc--C--CCccccc
Confidence 999999999999999999776666654 58999999999995 5788999999999999987433332 1 2223367
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 521 YACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.|.+++|+|-|.+|++|+.|.++++|.-
T Consensus 352 ~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ceeeeeccccceeEeecCCCcceeeecc
Confidence 8999999999999999999999999964
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-28 Score=257.64 Aligned_cols=317 Identities=19% Similarity=0.333 Sum_probs=244.2
Q ss_pred CCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 007757 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~ 325 (590)
..++.+++++.++.-++-.-..++ -|.|--..+++.|..|.++|..|+|+|. +.+++||+.|-+|+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQ-------------lWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQ-------------LWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIK 76 (1202)
T ss_pred cccceecCCCCCEEEEeecCceee-------------eehhhhhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEE
Confidence 355667777766544444444444 4577777899999999999999999999 99999999999999
Q ss_pred EEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEE
Q 007757 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvs 404 (590)
||+. ...+|+.++.||-..|+.+.|++.-.+|+|+|.|.+|+||++.+++++..+..+ |.+.|..|+|.. .++++
T Consensus 77 VWnY-k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE---DlIVS 152 (1202)
T KOG0292|consen 77 VWNY-KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE---DLIVS 152 (1202)
T ss_pred EEec-ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc---ceEEE
Confidence 9999 789999999999999999999999999999999999999999999999988653 344455566544 58999
Q ss_pred EEcCCcEEEEECCCCc-----------------------------eEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007757 405 GMSDKKIVQWDMNTKE-----------------------------ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 405 g~~dg~I~vwDl~t~~-----------------------------~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
++-|.+|++||+..-+ ....+.+|...|+.++|+|.-..|++|++|..|++
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence 9999999999985210 12346789999999999999999999999999999
Q ss_pred EECCCCcEE-EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEE
Q 007757 456 WEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 456 wdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
|.+...+.. .....+|...|.++-|||...++++.+.|+.|++||+..+..+..+.. . ....+.++.+|..+++
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr---e--ndRFW~laahP~lNLf 307 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR---E--NDRFWILAAHPELNLF 307 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec---c--CCeEEEEEecCCccee
Confidence 998654432 222347999999999999999999999999999999987766544432 2 2445668888888888
Q ss_pred EEEeCCCc--------------------------EEEEeCCCCeE--EEEEecC---CCCEEEEEEcCCCCCEEEEEeCC
Q 007757 535 MSGDGEGK--------------------------CWFWDWKSCKV--FRTLKCH---EGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 535 ~sgs~dg~--------------------------I~iwd~~t~~~--~~~l~~h---~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
++|-..|. |+.+|+.+.+- +..++.. -.++.++.++|..+..+++...|
T Consensus 308 AAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~ 387 (1202)
T KOG0292|consen 308 AAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLD 387 (1202)
T ss_pred eeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccC
Confidence 87765553 22233333221 2222222 24678899999666666665555
Q ss_pred Cc
Q 007757 584 GL 585 (590)
Q Consensus 584 G~ 585 (590)
+.
T Consensus 388 n~ 389 (1202)
T KOG0292|consen 388 NG 389 (1202)
T ss_pred CC
Confidence 43
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.3e-28 Score=232.12 Aligned_cols=283 Identities=22% Similarity=0.366 Sum_probs=240.9
Q ss_pred hccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007757 241 KGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~ 320 (590)
.++.|++...++.+..++.++++.|.++=+|..-. -.+-..+++||++.|..+.|.++ +..|++++.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g------------dceN~~~lkgHsgAVM~l~~~~d-~s~i~S~gt 110 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG------------DCENFWVLKGHSGAVMELHGMRD-GSHILSCGT 110 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccc------------cccceeeeccccceeEeeeeccC-CCEEEEecC
Confidence 35666777788999999999999999999995422 12334577899999999999999 999999999
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCC
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 399 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (590)
|.+|+.||+ .++++++.+++|..-|+.+.-+.-| .++.+++.||+++|||+++...++++........+.|.-..
T Consensus 111 Dk~v~~wD~-~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s--- 186 (338)
T KOG0265|consen 111 DKTVRGWDA-ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTS--- 186 (338)
T ss_pred CceEEEEec-ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccc---
Confidence 999999999 7999999999999999999955544 46668889999999999999999999887777788887655
Q ss_pred cEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC----cEEEEeecCCCC--
Q 007757 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP----VVIKYISEPHMH-- 473 (590)
Q Consensus 400 ~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~----~~~~~~~~~~~~-- 473 (590)
..+++|+-|+.|++||++.+.....+.+|..+|+.+..+++|.++++-+.|.++++||++.. .++..+ ..+.+
T Consensus 187 ~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-~g~~hnf 265 (338)
T KOG0265|consen 187 DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-QGHIHNF 265 (338)
T ss_pred cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-ecchhhh
Confidence 45999999999999999999999999999999999999999999999999999999999753 223333 22332
Q ss_pred --cccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007757 474 --SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 474 --~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
....++|+|++..+.+|+.|..+++||......+ ..+.|| .+.|.+++|+|...+|.+++.|.+|++=
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l---yklpGh--~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL---YKLPGH--YGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEE---EEcCCc--ceeEEEeeecCCCcEEEEeccCceeEee
Confidence 3457899999999999999999999998775443 456777 6789999999999999999999999874
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.7e-29 Score=261.85 Aligned_cols=253 Identities=22% Similarity=0.424 Sum_probs=211.7
Q ss_pred ceeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC-------------------------------------
Q 007757 290 RLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN------------------------------------- 331 (590)
Q Consensus 290 ~~v~~l~-gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~------------------------------------- 331 (590)
...+.+. +|.+.|.++.|+++ |++||+||.||.|+||.+.+
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred EEeeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 4455666 89999999999999 99999999999999998843
Q ss_pred ----------------------CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceE
Q 007757 332 ----------------------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 389 (590)
Q Consensus 332 ----------------------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~ 389 (590)
..++++.|.||.+.|.+|.|+.+ ++|++++.|.+|+||++....|++.|.+...++|
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 01244566799999999999975 5899999999999999999999999999999999
Q ss_pred EEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec
Q 007757 390 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 390 ~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~ 469 (590)
+.|+|.++ ++|++|+-||+|+||++...+.+.-... ..-|++++|.|+|+..++|+.+|.+++|+....+.......
T Consensus 415 VaFnPvDD--ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDD--RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEecccCC--CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99999876 7999999999999999998877665544 48899999999999999999999999999977665544321
Q ss_pred -------CCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC
Q 007757 470 -------PHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 470 -------~~~~~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
.....|+++.+.|... .|++.+.|..|+|||.++...+.. |+|......-....|+.||++|++++.|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K---fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK---FKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh---hcccccCCcceeeeEccCCCEEEEeecCc
Confidence 1123799999998543 578889999999999987665544 44444444445689999999999999999
Q ss_pred cEEEEeCCC
Q 007757 542 KCWFWDWKS 550 (590)
Q Consensus 542 ~I~iwd~~t 550 (590)
.|+||+...
T Consensus 569 ~VYiW~~~~ 577 (712)
T KOG0283|consen 569 WVYIWKNDS 577 (712)
T ss_pred eEEEEeCCC
Confidence 999999744
No 53
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.1e-30 Score=245.87 Aligned_cols=288 Identities=18% Similarity=0.324 Sum_probs=237.0
Q ss_pred cCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 286 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 286 ~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
++.+..+..|.||..+|.|++=+|..-..++||+.||.|+|||+ ....+++++..|.+.|..|++.. ..+++++.|.
T Consensus 53 ~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnl-sqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 53 VFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNL-SQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred HhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEeh-hhhhhhheeecccCceeeEEecc--cceEEecCCc
Confidence 34455677889999999999999995588999999999999999 68899999999999999999987 6799999999
Q ss_pred eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCC-EE
Q 007757 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RF 444 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~-~l 444 (590)
+|+.|-++. ..++++.......-+..+.. .+.+++++ -.|.|||..-..+++.+.--...|.++.|+|... .|
T Consensus 130 tvK~wk~~~-~p~~tilg~s~~~gIdh~~~---~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsIL 203 (433)
T KOG0268|consen 130 TVKQWKIDG-PPLHTILGKSVYLGIDHHRK---NSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSIL 203 (433)
T ss_pred ceeeeeccC-Ccceeeeccccccccccccc---cccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchhe
Confidence 999999875 35666655444444443332 24566665 4699999998889999887788999999999754 56
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEE
Q 007757 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
++|..|++|.|||++...+++.+.. ...-..|+|+|.+-.|++++.|..++.||++... .....+.+| ...+.+
T Consensus 204 as~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dh--vsAV~d 277 (433)
T KOG0268|consen 204 ASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDH--VSAVMD 277 (433)
T ss_pred eeeccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhc--ccchhhccc--ceeEEE
Confidence 7777999999999999988887753 3456789999988889999999999999998653 335667788 456889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
++|||-|+-+++|+.|.+|+||....+..-..+.. -...|.++.|+. +..++++||.|+.|++|
T Consensus 278 VdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 278 VDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLW 342 (433)
T ss_pred eccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeee
Confidence 99999999999999999999999887654332211 124699999999 78899999999999999
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-27 Score=224.18 Aligned_cols=286 Identities=17% Similarity=0.345 Sum_probs=234.9
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC--CCeEE
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY--DKNIK 368 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~--Dg~I~ 368 (590)
..+.|..-.+.|++|.|+++ |.+|++++.|.+|+|||. .+++.++++..+.-.|..++|....+.++.++. |.+|+
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~-~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDS-LSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEc-CCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 34556667888999999999 999999999999999999 789999999999889999999998888888877 88999
Q ss_pred EEECCCCcEEEEccCCCC-ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 369 YWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
..++.+.+.++.|..++. +..++.+|-+ ..+++++.|++|++||++..++...+.. ..-..++|.|.|-+||++
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALA 158 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEe
Confidence 999999999999977543 4566667655 5799999999999999998877666643 334457899999999999
Q ss_pred eCCCcEEEEECCCC----cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccccc-ce
Q 007757 448 SDDKSLRVWEFGIP----VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-YA 522 (590)
Q Consensus 448 s~Dg~I~iwdl~~~----~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v 522 (590)
.....|++||++.- .....+..+.....+.|.|+|+|++|+.++..+.+++.|.-++..+.. +.++.... .-
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t---fs~~~~~~~~~ 235 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST---FSGYPNAGNLP 235 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee---EeeccCCCCcc
Confidence 98889999999763 222233334567789999999999999999999999999888765543 33333222 22
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
...+|+||+++|++|+.||+|.+|++.++..+..+++ +.+++.++.|+| ...+++|++ ..+.+|
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFVSAS--SNLVFW 300 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeeeecC--ceEEEE
Confidence 4688999999999999999999999999999999998 788999999999 555566554 467777
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-27 Score=223.10 Aligned_cols=283 Identities=20% Similarity=0.323 Sum_probs=223.4
Q ss_pred CCCCcccCCc-ceeecccccccccceeecCCCccccCCCCccCCcceeEEe-cCCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 007757 246 GEKGEHVEDK-STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW-SGHTKGVSAIRFFPKYGHLILSAGMDTK 323 (590)
Q Consensus 246 ~~~~~~~~~~-s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l-~gH~~~V~~l~fsp~~g~~L~sgs~Dg~ 323 (590)
.....+.++. ..++++++.|..+|.|-....+ ...+...+ .+|+..|.+++|+|. |++|++||.|.+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~----------s~~ck~vld~~hkrsVRsvAwsp~-g~~La~aSFD~t 84 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD----------SWTCKTVLDDGHKRSVRSVAWSPH-GRYLASASFDAT 84 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCC----------cEEEEEeccccchheeeeeeecCC-CcEEEEeeccce
Confidence 3444455555 5678999999999999654321 13344455 379999999999999 999999999999
Q ss_pred EEEEEcc-CCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC---cEEEEccCC-CCceEEEEecCCCC
Q 007757 324 VKIWDVV-NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFSTG-KIPYVVKLNPDDDK 398 (590)
Q Consensus 324 I~iWd~~-~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~---~~~~~~~~~-~~~~~~~~~~~~~~ 398 (590)
+.||.-. ...+++.++.||...|.|++|+++|++||+|+.|+.|-||.+..+ .++..+..+ ..+..+.|+|..
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-- 162 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-- 162 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc--
Confidence 9999753 234889999999999999999999999999999999999999755 355555443 445677888765
Q ss_pred CcEEEEEEcCCcEEEEECC---CCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcc
Q 007757 399 QNILLAGMSDKKIVQWDMN---TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 475 (590)
Q Consensus 399 ~~~lvsg~~dg~I~vwDl~---t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i 475 (590)
.+|++++.|.+|++|+-. .-.+++++.+|...|.++.|.+.|.+|+++++|++|+||-+. ..+...|...+
T Consensus 163 -dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~~ 236 (312)
T KOG0645|consen 163 -DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRAL 236 (312)
T ss_pred -ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccce
Confidence 589999999999999876 236899999999999999999999999999999999999865 22333467788
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc--ccccCcccccceEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 007757 476 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK--KRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 476 ~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~ 549 (590)
..+.|. ...|++++.|+.|++|.......-... .....+.+...|+++.|.|. .++|++|+.||.|++|.+.
T Consensus 237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 899998 568999999999999976542111111 11112223557899999995 7889999999999999864
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.7e-27 Score=271.85 Aligned_cols=288 Identities=17% Similarity=0.259 Sum_probs=227.0
Q ss_pred cccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 007757 250 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
..+.+...+..+++.|..+++|-...... ... .....+..+.+ ...|.+++|+|..+.+|++++.||+|+|||+
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~----~~~-~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIK----DGR-DIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccc----ccc-ccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 45666667778888999999996432100 000 01112334444 4679999999876889999999999999999
Q ss_pred cCCCeeEEEeccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC
Q 007757 330 VNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 330 ~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
..++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.++.++..+.....+.++.|.+ ..+.+|++|+.|
T Consensus 563 -~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~--~~g~~latgs~d 639 (793)
T PLN00181 563 -ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPS--ESGRSLAFGSAD 639 (793)
T ss_pred -CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeC--CCCCEEEEEeCC
Confidence 57888899999999999999997 78999999999999999999999988887665566666644 335789999999
Q ss_pred CcEEEEECCCCc-eEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC------cEEEEeecCCCCcccEEEEc
Q 007757 409 KKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLH 481 (590)
Q Consensus 409 g~I~vwDl~t~~-~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~------~~~~~~~~~~~~~i~~i~~s 481 (590)
|.|++||+++.. .+..+.+|...|.++.|. ++.+|++++.|++|++||++.. ..+..+ ..|...+.+++|+
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s 717 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLS 717 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEc
Confidence 999999999875 567788999999999997 6789999999999999999743 344444 3578889999999
Q ss_pred CCCCEEEEEEcCCeEEEEEccCceeecccc-----cc---cCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 482 PNTNWLAAQSLDNQILIYSTRERFQLNKKK-----RF---AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 482 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~---~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
|++.+|++|+.|+.|++|+........... .. ........|.+++|+|++.+|++|+.+|.|+||++
T Consensus 718 ~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999976543221110 00 01112356889999999999999999999999986
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=224.22 Aligned_cols=243 Identities=23% Similarity=0.405 Sum_probs=207.1
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEE
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
+.++.+..|.++|+.+.|+-+|++.++|+.|++|++|+...+.+++++..+ +.+.-.....++ ..|++|+.|..|.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn---skf~s~GgDk~v~ 84 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN---SKFASCGGDKAVQ 84 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc---cccccCCCCceEE
Confidence 356678899999999999999999999999999999999999999999764 344444555444 4599999999999
Q ss_pred EEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC--cEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007757 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 413 vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~s~ 490 (590)
+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++. .+++.+. .....|.++.+ .+..|++|
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v--~~heIvaG 161 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDV--AEHEIVAG 161 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEe--cccEEEee
Confidence 9999999999999999999999999999999999999999999999754 4555554 35567777777 46789999
Q ss_pred EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCE--EEEE
Q 007757 491 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC--IGCE 568 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V--~~v~ 568 (590)
+.||+++.||++.+.... .+- ..+|++++|++||+.+++++-|++|++.|-.+|+++..+++|...- ..++
T Consensus 162 S~DGtvRtydiR~G~l~s---Dy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSS---DYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred ccCCcEEEEEeecceeeh---hhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 999999999999875442 122 4568899999999999999999999999999999999999998643 4556
Q ss_pred EcCCCCCEEEEEeCCCcEEEeC
Q 007757 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++. ....+++|+.||.|.+||
T Consensus 235 l~q-sdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 235 LNQ-SDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ecc-cceeEEeccCCceEEEEE
Confidence 665 556899999999999997
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3.5e-27 Score=234.46 Aligned_cols=279 Identities=26% Similarity=0.508 Sum_probs=230.2
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007757 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I 324 (590)
.........+...+......|...+.|-.. ..+....+.+|...|.++.|+|+ +++|++++.||.|
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i 75 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLE-------------TGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTI 75 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEee-------------CCCcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeE
Confidence 344444555555555666667777777443 22356778899999999999999 7899999999999
Q ss_pred EEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEE
Q 007757 325 KIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 325 ~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lv 403 (590)
++|++ ..++.+..+..|...|.++.|++++.++++++.++.|.+||+.+++....+..+ ..+..+.+.+. ..+++
T Consensus 76 ~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~ 151 (289)
T cd00200 76 RLWDL-ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD---GTFVA 151 (289)
T ss_pred EEEEc-CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc---CCEEE
Confidence 99999 566778888899999999999999888888888999999999988888877633 34566677665 35777
Q ss_pred EEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC
Q 007757 404 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 404 sg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
+++.++.|++||+++++.+..+..|...|.++.|+|+++.+++++.++.|++||++....+..+. .+...+.++.|+|+
T Consensus 152 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~ 230 (289)
T cd00200 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPD 230 (289)
T ss_pred EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCC
Confidence 77779999999999999889998999999999999999999999999999999998877766653 46678999999999
Q ss_pred CCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 484 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 484 g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
+.++++++.++.|++|++......... ..+ ...+.+++|+|++++|++++.||.|++|+
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~---~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQTL---SGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEEEc---ccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888888888999999999875544333 344 45688999999999999999999999996
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=254.66 Aligned_cols=277 Identities=24% Similarity=0.424 Sum_probs=236.1
Q ss_pred EEecC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEE-eccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 293 HTWSG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 293 ~~l~g-H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
..+.+ |...|+|..|+ ..++++++.|.+|++|+. ..+..+.. +.||.+.|.+++|..-+.+|++|+.|.+++||
T Consensus 201 ~~~~~~~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~-~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH---DGFFKSGSDDSTLHLWDL-NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee---cCeEEecCCCceeEEeec-ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 44444 67789999998 358999999999999999 56766666 99999999999998878899999999999999
Q ss_pred ECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
|+.+|+|...+.. +...+.++.... ..+++|+.|.+|++|++.++..+..+.+|.++|+++... +.++++|+.|
T Consensus 277 d~~sg~C~~~l~g-h~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 277 DCSTGECTHSLQG-HTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred ecCCCcEEEEecC-CCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 9999999999974 333333333322 568889999999999999999999999999999999997 7899999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCC
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
++|++||+.+.+++..+.. |...|.++.+.+. ..+++|+.|+.|++||+++.. .....+.+|. ..+. .+...
T Consensus 351 ~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~--~~v~--~l~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHT--SLVS--SLLLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCc--cccc--ccccc
Confidence 9999999999999998875 9999999988765 899999999999999999873 3345666663 3333 33447
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 531 GRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 531 g~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+++|++++.||.|++||..+++++.++.+ |.+.|..+++. ...+++++.||++++||
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEe
Confidence 88999999999999999999999999998 67888888885 35799999999999997
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.2e-28 Score=223.13 Aligned_cols=281 Identities=22% Similarity=0.366 Sum_probs=224.3
Q ss_pred eEEEEcCCCCCEEEEEe-------CCCcEEEEEccCCCeeEEEe--ccCCCceeEEEEec-CCCEEEEEeCCCeEEEEEC
Q 007757 303 SAIRFFPKYGHLILSAG-------MDTKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 303 ~~l~fsp~~g~~L~sgs-------~Dg~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~ 372 (590)
.++.|+|--.++|+.+. ..|++.|-++. ..+-+..+ ..-...+.+++|++ ..+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~-~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVT-DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecC-CCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 57789996666666553 36889999983 33333332 23567899999999 4578899999999999996
Q ss_pred CCC-cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC-CCEEEEEeCC
Q 007757 373 ETG-QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDD 450 (590)
Q Consensus 373 ~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~-~~~l~s~s~D 450 (590)
... .++..++.+ ...+..+.+.......+++++.|++|++|+...+..++++.+|...|....|+|. .+.|+++|.|
T Consensus 91 ~~~s~Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSKPIHKFKEH-KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCcchhHHHhh-hhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 432 455555433 3344455555455678889999999999999999999999999999999999985 6789999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
+++++||++.+.....+ ..|...|.++.|+. +...|++|+.|+.|++||++.... ++..+.+| .-.|..+.|||
T Consensus 170 ~~l~lwdvr~~gk~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--pl~eL~gh--~~AVRkvk~Sp 244 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSI-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--PLFELNGH--GLAVRKVKFSP 244 (311)
T ss_pred ceEEEEEecCCCceeEE-EeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--cceeecCC--ceEEEEEecCc
Confidence 99999999987655554 45888999999987 467899999999999999987542 34556777 45588999999
Q ss_pred C-CCEEEEEeCCCcEEEEeCCC-CeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 530 D-GRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 d-g~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
. ..+|++++.|-+++|||... -.++.+...|+.-|..+.|++..+.++|++|+|+.++||+
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6 45789999999999999874 4456677788999999999999999999999999999996
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-27 Score=246.18 Aligned_cols=273 Identities=17% Similarity=0.316 Sum_probs=234.0
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEcc
Q 007757 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 303 ~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
+-+.|+. .+.|+.|. ...|++|+. ..+........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 181 nlldWss--~n~laVal-g~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 181 NLLDWSS--ANVLAVAL-GQSVYLWSA-SSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hHhhccc--CCeEEEEe-cceEEEEec-CCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 4456774 46677665 457999998 4666555555558999999999999999999999999999999999999998
Q ss_pred CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE-EcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 007757 383 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~-~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~ 461 (590)
.++...+.++.+.. ..+.+|+.++.|.++|++..+.... +.+|...|..+.|++++++|++|+.|+.+.|||....
T Consensus 257 ~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 257 GSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 87787777777763 6899999999999999998865555 8889999999999999999999999999999999877
Q ss_pred cEEEEeecCCCCcccEEEEcCC-CCEEEEE--EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEE-
Q 007757 462 VVIKYISEPHMHSMPSISLHPN-TNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG- 537 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg- 537 (590)
.+...+. .|...|.+++|+|- ..+||+| +.|++|++|+..++..+..... ...||.+.|++..+-|+++
T Consensus 334 ~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt------gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 334 EPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT------GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred cccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc------CCceeeEEEcCCCCEEEEec
Confidence 7777775 49999999999995 5678876 4789999999998766644432 5789999999998777654
Q ss_pred -eCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 538 -DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 538 -s~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..++.|.||++.+.+.+..+.+|...|..++++| ++..|++|+.|.++++|+
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWN 459 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEecc
Confidence 4677899999999999999999999999999999 688999999999999996
No 62
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=223.96 Aligned_cols=281 Identities=21% Similarity=0.362 Sum_probs=228.2
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeE-EEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
.-...|.+|+|+|....+++.||.||+|++|++...+..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467799999999757788899999999999996655443 445679999999999999999999999999999999999
Q ss_pred cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007757 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
+....-.+...+.++.|..... -..|++|+.|++|++||+|...++.++. -...+.++..- ...++++..++.|.+
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred CeeeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 8877777777777777776553 4689999999999999999998888775 34556666553 458889999999999
Q ss_pred EECCCC-cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccc-------ccceEEEEE
Q 007757 456 WEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV-------AGYACQVNF 527 (590)
Q Consensus 456 wdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~-------~~~v~~v~~ 527 (590)
|+++.+ ...+.+..+....++||++.++....+.|+-+|.+.|..+..... .....|+.|.. --.|.+|+|
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEe
Confidence 999654 445566667778899999999998889999999999998877533 22333444432 124778999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEE-EEeCC
Q 007757 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA-TCGWD 583 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~-s~g~D 583 (590)
+|....|+++++||++.+||-.....+.+.+.|..+|+++.|+. +++++| ..|.|
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~-~G~ifaYA~gYD 315 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR-NGSIFAYALGYD 315 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC-CCCEEEEEeecc
Confidence 99999999999999999999888888888889999999999999 455544 44544
No 63
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=236.43 Aligned_cols=309 Identities=17% Similarity=0.294 Sum_probs=241.6
Q ss_pred cccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeE-----
Q 007757 262 EETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM----- 336 (590)
Q Consensus 262 ~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~----- 336 (590)
...+.+||.+........... ... +..+..|.-+|+|++++|+ ..++++++.+|+|.=|++. .++..
T Consensus 111 d~le~~Gr~~r~~a~~v~~~~-----s~~-~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~-tgk~~~~i~~ 182 (479)
T KOG0299|consen 111 DVLEQSGRVRRLVADKVQAPE-----SSD-FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVL-TGKKDRYIIE 182 (479)
T ss_pred HHHHhcceeehhhhhhccccc-----ccc-ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehh-cCcccccccc
Confidence 344567777655444333221 122 5678899999999999999 8999999999999999984 33211
Q ss_pred ------------EEe-ccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCC-CceEEEEecCCCCCcEE
Q 007757 337 ------------RTY-MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNIL 402 (590)
Q Consensus 337 ------------~~~-~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 402 (590)
..- .+|...|.+++.++||++|++|+.|..|.||+.++.+.++.+..+. .+..++|... .+-+
T Consensus 183 ~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---t~~l 259 (479)
T KOG0299|consen 183 RDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---TSEL 259 (479)
T ss_pred cchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC---ccce
Confidence 111 3788999999999999999999999999999999999999976554 3444555443 2569
Q ss_pred EEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC
Q 007757 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 403 vsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp 482 (590)
++++.|+.|++|++.....+.++-+|.+.|..|....-++.+-+|+.|+++++|++... .+.+..++...+.|++|-.
T Consensus 260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In 337 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFIN 337 (479)
T ss_pred eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEec
Confidence 99999999999999999999999999999999999988888888889999999999433 4444457888999999984
Q ss_pred CCCEEEEEEcCCeEEEEEccCceeecccccccCcccc-------cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----
Q 007757 483 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA-------GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---- 551 (590)
Q Consensus 483 ~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~---- 551 (590)
...|++|+.+|.|.+|++....++.....-.+-... .+|++++..|...++++|+.+|.|++|-+..+
T Consensus 338 -~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 338 -DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred -ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 568999999999999999877666544433222211 38999999999999999999999999998876
Q ss_pred eEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 007757 552 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
.++..+. -.+.|++++|++++..+++.+|..-.
T Consensus 417 ~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 417 NLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred ceeeecc-cccEEEEEEEccCCCEEEEecccccc
Confidence 4555555 56789999999955546666655433
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=8.8e-29 Score=236.75 Aligned_cols=253 Identities=21% Similarity=0.417 Sum_probs=208.1
Q ss_pred CccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC
Q 007757 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 284 ~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~ 363 (590)
|......+++.+.||++.|.|+.|. .++|++|+.|.+|+|||+ ++++++.++.+|...|..+.|+. .++++++.
T Consensus 222 WD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv-~tge~l~tlihHceaVLhlrf~n--g~mvtcSk 295 (499)
T KOG0281|consen 222 WDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDV-NTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSK 295 (499)
T ss_pred eccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEec-cCCchhhHHhhhcceeEEEEEeC--CEEEEecC
Confidence 3455667888999999999999996 569999999999999999 79999999999999999999974 49999999
Q ss_pred CCeEEEEECCCCcEEE--EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 364 DKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
|.+|.|||+.+..-+. ..-.++...+-...++. .++++++.|.+|++|++.+++.+.++.+|...|.|+.+ .+
T Consensus 296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~ 370 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RD 370 (499)
T ss_pred CceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cC
Confidence 9999999998764221 11223433333333333 58999999999999999999999999999999999988 47
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec------ccccccC
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN------KKKRFAG 515 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~------~~~~~~~ 515 (590)
+++++||.|.+|++||+..+.+++.+. +|..-|.++.| +.+.+++|..||.|++||+....... ....+..
T Consensus 371 rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~ 447 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 447 (499)
T ss_pred eEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence 899999999999999999999888774 68889999999 57789999999999999997654321 1122223
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 007757 516 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
| .+.|..+.| |...|++++.|.+|.|||+..+.+-
T Consensus 448 h--sgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 448 H--SGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred c--cceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 3 567878888 6678999999999999999776543
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=8.6e-27 Score=242.59 Aligned_cols=282 Identities=18% Similarity=0.315 Sum_probs=242.1
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
++.||...|.+++++.+ ...++||+ .+.|+||+. .+.+|++++..- .+.+..|.|.++++++|...|.+.++|+.
T Consensus 368 ~~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~-~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNR-DTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeccchhheeEEEeecC-ceeeeecC-CCcEEEEEc-cCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEee
Confidence 56799999999999988 55555554 678999999 689999998754 89999999999999999999999999999
Q ss_pred CCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-----Cce--EEEEc-----ccCCceeEEEEeCC
Q 007757 374 TGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEI--TQEYD-----QHLGAVNTITFVDS 440 (590)
Q Consensus 374 t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-----~~~--~~~~~-----~h~~~V~~i~~~p~ 440 (590)
+...+.++.. ....+.+...|++ .-+++|+.|.+|++||..- +.. +..+. .-...|.|+.++|+
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~---~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDN---KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCC---CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 9988877764 3456677777766 4599999999999999741 111 11111 23567999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccccc
Q 007757 441 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
+++|+++--|.+|+||-+++.+....+. +|.-+|.||.++|+++.+++|+.|..|++|-+.-+.+- +.+-+| ..
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~fAH--dD 593 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSFFAH--DD 593 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhhhcc--cC
Confidence 9999999999999999999887776664 69999999999999999999999999999988766544 455566 56
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.|+++.|-|+..++++++.|+.|+-||-...+++.++.+|...|++++.+| ++++++|+|.|.+|++|.
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeee
Confidence 789999999999999999999999999999999999999999999999999 788999999999999994
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-27 Score=219.17 Aligned_cols=268 Identities=18% Similarity=0.345 Sum_probs=216.9
Q ss_pred cccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCc
Q 007757 266 YQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA 345 (590)
Q Consensus 266 ~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~ 345 (590)
..||+++....+.+.+.+ ...+ .-..++..++|++...+.+++++.||.++|||+.....++..++.|...
T Consensus 36 G~G~L~ile~~~~~gi~e--------~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E 106 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQE--------CQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE 106 (311)
T ss_pred cCceEEEEecCCCCCeEE--------EEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh
Confidence 467888876654322221 1222 3467799999999989999999999999999997777899999999999
Q ss_pred eeEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE
Q 007757 346 VRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 423 (590)
Q Consensus 346 V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~ 423 (590)
|.++.|++ ....++++|.|++|++|+...++.+++|..+. .++...|+|. .++++++++.|+.+++||++......
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~--~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH--IPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC--CCCeEEEccCCceEEEEEecCCCcee
Confidence 99999999 67788899999999999999999999987643 3445556664 45899999999999999999765555
Q ss_pred EEcccCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEc
Q 007757 424 EYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYST 501 (590)
Q Consensus 424 ~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~ 501 (590)
.+..|...|.|+.|+. +.+.+++|+.|+.|++||++..+.......+|...|..+.|+|. ...|++++.|-+++|||.
T Consensus 185 ~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 185 SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 6889999999999996 45678899999999999998765444444679999999999997 468999999999999998
Q ss_pred cCceeecccccccCcccccceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 007757 502 RERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~ 548 (590)
...... +.....| ...++.+.||+ ++.++++.+.|+.++||+-
T Consensus 265 ~~~ds~--~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSA--IETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhh--hhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 754332 2223333 56788899988 6789999999999999983
No 67
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2.1e-26 Score=216.34 Aligned_cols=292 Identities=20% Similarity=0.328 Sum_probs=235.4
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC-----------eeE---EEeccCCCceeEEEEec-CCCEEEE
Q 007757 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-----------KCM---RTYMGHSKAVRDISFCN-DGTKFLT 360 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~-----------~~~---~~~~~h~~~V~~l~fsp-dg~~l~s 360 (590)
+.|.+.|+++...+..|+++++|+.||.|.|||+.+.. .++ ..-.+|.-.|.++.|-| |.-.|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999999989999999999999999995422 111 01236888999999999 7778999
Q ss_pred EeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC
Q 007757 361 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
++.|.+++|||+.|.+....|.....++...++|-.....++++|..+-.|++.|+.+|.....+.+|.+.|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 99999999999999999999999999999999998877788999999999999999999999999999999999999998
Q ss_pred CCE-EEEEeCCCcEEEEECCCC-cEEEEe-------------ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce
Q 007757 441 NRR-FVTSSDDKSLRVWEFGIP-VVIKYI-------------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 441 ~~~-l~s~s~Dg~I~iwdl~~~-~~~~~~-------------~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~ 505 (590)
..+ |++|+.||.|++||++.. .+...+ ...|.+.+..++|..++.++++++.|..+++|+..++.
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 775 678999999999999754 232222 23466779999999999999999999999999987764
Q ss_pred eecccccccCcc-cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 506 QLNKKKRFAGHI-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 506 ~~~~~~~~~~~~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
..........|. ..+....+. +-+...++.--.++.+.++++-.+..+..+..|-..|.++++-| +-....+|..|+
T Consensus 280 ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNG 357 (397)
T ss_pred ccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCC
Confidence 322111111110 011111122 33334444444568999999999999999999988999999998 666799999999
Q ss_pred cEEEe
Q 007757 585 LIKYW 589 (590)
Q Consensus 585 ~I~iW 589 (590)
.|..|
T Consensus 358 ni~~w 362 (397)
T KOG4283|consen 358 NIYMW 362 (397)
T ss_pred ccccc
Confidence 99988
No 68
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.3e-25 Score=240.44 Aligned_cols=264 Identities=16% Similarity=0.202 Sum_probs=200.2
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeE-------------EEeccCCCceeEEEEec-CCCEEEEEeCCC
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM-------------RTYMGHSKAVRDISFCN-DGTKFLTASYDK 365 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-------------~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg 365 (590)
..|.....+++ +..+++++.+.....|+.. .+..+ ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 21 ~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~-gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 21 LNVTPSTALWD-CSNTIACNDRFIAVPWQQL-GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eccccccccCC-CCCcEeECCceEEEEEecC-CceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 34555555566 5566777777777777652 22111 24678999999999999 889999999999
Q ss_pred eEEEEECCCCc-------EEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEE
Q 007757 366 NIKYWDTETGQ-------VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF 437 (590)
Q Consensus 366 ~I~vWd~~t~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~ 437 (590)
+|++||+.++. .+..+..+ ..+.++.|+|.. .++|++|+.|+.|++||+++++.+..+..|...|.+++|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 99999997653 34444432 345567777653 368999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCc-ccEEEEcCCCCEEEEEE----cCCeEEEEEccCceeeccccc
Q 007757 438 VDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQS----LDNQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~-i~~i~~sp~g~~l~s~s----~dg~I~iwd~~~~~~~~~~~~ 512 (590)
+|++.+|++++.|+.|+|||++++..+..+.. |... +..+.|.+++..|++++ .|+.|++||++...... ..
T Consensus 177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~--~~ 253 (493)
T PTZ00421 177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY--ST 253 (493)
T ss_pred ECCCCEEEEecCCCEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce--eE
Confidence 99999999999999999999999888776653 5443 45678899888777654 47899999998643221 11
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEec-CCCCEEEEEEcC
Q 007757 513 FAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHP 571 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp 571 (590)
...+ ....+....|++++++|++|+ .||.|++||+.+++++..... +..++.+++|.|
T Consensus 254 ~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 254 VDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred eccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 1111 123455578999999999887 599999999999998877654 345677888887
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=230.85 Aligned_cols=277 Identities=20% Similarity=0.303 Sum_probs=231.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
-..|++|+|+|...+-+++.+. -.+.||+. ......+++......|.+++|..||++|++|...|.|+|+|+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~-~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSS-VTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEec-chhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3569999999976666666553 56899998 566677777778899999999999999999999999999997776566
Q ss_pred EEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCC-EEEEEeCCCcEEEE
Q 007757 379 RTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVW 456 (590)
Q Consensus 379 ~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iw 456 (590)
+.+..+ .+...+.|++.+. .++++|+.|+.+++||+.+......+.+|...|.|.+|+|.+. .+++||.||.|++|
T Consensus 104 R~~~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHhhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 666554 4456777777654 7899999999999999999987668999999999999999765 78999999999999
Q ss_pred ECCCCc-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007757 457 EFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 457 dl~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
|++... .+..+ .|..+|..+.+-|.|..+++++ .+.|++||+.++.++. .....| ...|+|+++..++..|+
T Consensus 182 DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll--~~~~~H--~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 182 DTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL--TSMFNH--NKTVTCLRLASDSTRLL 254 (487)
T ss_pred EeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh--hhhhcc--cceEEEEEeecCCceEe
Confidence 999874 44444 6999999999999999999876 5779999998654442 222334 46799999999999999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 536 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 536 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
+|+-||.|++||+.+.+.+..+. -.++|.+++.+| +...++.|..||.+.+
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred ecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeee
Confidence 99999999999999999999988 467899999999 6778999999998754
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-25 Score=213.75 Aligned_cols=249 Identities=18% Similarity=0.313 Sum_probs=206.9
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc-eEEEEecCCCCCcEEEEEEc--CCc
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMS--DKK 410 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~--dg~ 410 (590)
++.+.+......|++|.|+.+|.+|++++.|.+|+|||..+++.++++...+.. ..++|.... +.++.++. |..
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~---~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS---NTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC---ceEEEccCCCCCc
Confidence 344455566788999999999999999999999999999999999998776544 355555433 45666666 889
Q ss_pred EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007757 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~ 490 (590)
|+..++.+.+.++.+.+|...|++|+.+|-+..|++++.|++|++||++...+...+. ...-..++|+|.|-++|++
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGLIFALA 158 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999888877763 3445678999999999999
Q ss_pred EcCCeEEEEEccCceeecccccccCc-ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCC---EEE
Q 007757 491 SLDNQILIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV---CIG 566 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~---V~~ 566 (590)
...+.|++||++.-..- ++..+.-. ........+.|||||++|+.++..+.+++.|.-+|..+.++..+... ...
T Consensus 159 ~~~~~IkLyD~Rs~dkg-PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKG-PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred cCCCeEEEEEecccCCC-CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 98889999999864211 11222111 12355678999999999999999999999999999999999887653 267
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 567 CEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 567 v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+|.| ++++|++|+.||+|.+|+
T Consensus 238 a~ftP-ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 238 ATFTP-DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EEECC-CCcEEEEecCCCcEEEEE
Confidence 89999 788999999999999996
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.6e-27 Score=230.82 Aligned_cols=252 Identities=19% Similarity=0.330 Sum_probs=218.0
Q ss_pred CccCCcc--eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEE
Q 007757 284 HCYIPKR--LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 284 ~~~~p~~--~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~ 361 (590)
|+..+.+ ++.+|.|-.++|+++.|.++ ++.+++++.|+.+++|++ ...+...++.+|+..|+++.|......+++|
T Consensus 202 W~v~~~k~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnv-d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg 279 (459)
T KOG0288|consen 202 WNVLGEKSELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNV-DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG 279 (459)
T ss_pred hhcccchhhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeec-cchhhhhhhcccccceeeehhhccccceeec
Confidence 3444444 78899999999999999999 889999999999999999 7889999999999999999999877779999
Q ss_pred eCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 362 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
+.|.+|++||+....|.+++-.......+.+.. ..+++|-.|++|++||+++..++.+...+. .|+++..++++
T Consensus 280 s~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g 353 (459)
T KOG0288|consen 280 SADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG 353 (459)
T ss_pred cccchhhhhhhhhhheeccccccccccceEecc-----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCC
Confidence 999999999999999988877666655555542 569999999999999999999999987665 99999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecC---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
..+++++.|.++.+.|+++......+... ..+..+.+.|+|++.|+++|+.||.|+||++.+++..........
T Consensus 354 ~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s--- 430 (459)
T KOG0288|consen 354 LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS--- 430 (459)
T ss_pred eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC---
Confidence 99999999999999999998877766532 234588999999999999999999999999998776644443222
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007757 519 AGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
...|+++.|+|.|..|++++.++.+.+|
T Consensus 431 ~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 431 NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CcceEEEEEcCCCchhhcccCCcceEec
Confidence 3468999999999999999999999999
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-24 Score=196.51 Aligned_cols=290 Identities=18% Similarity=0.283 Sum_probs=226.3
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC--------------CCeeEEEeccCCCceeEEEEecCCC
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN--------------SGKCMRTYMGHSKAVRDISFCNDGT 356 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~--------------~~~~~~~~~~h~~~V~~l~fspdg~ 356 (590)
++.++ ..+..|.+++|+|. |.+.+.|+...+++|.-... .....+.-+.|.+.|.|.+|+|+|.
T Consensus 25 ~i~~l-~dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 25 AINIL-EDSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred EEEEe-cchhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 44444 45678999999999 89999999999999875411 0112233456899999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCcE------EEEccCCCCceEEEEecCCCCC-cEEEEE-EcCCcEEEEECCCCceEEEEccc
Q 007757 357 KFLTASYDKNIKYWDTETGQV------IRTFSTGKIPYVVKLNPDDDKQ-NILLAG-MSDKKIVQWDMNTKEITQEYDQH 428 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~------~~~~~~~~~~~~~~~~~~~~~~-~~lvsg-~~dg~I~vwDl~t~~~~~~~~~h 428 (590)
+|++|+.|.+|++.-.+...+ +..-.....+.-++|..++..+ .+|+++ ..|.+|++-|...|+..+.+.+|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 999999999999986653322 1111233445566666555433 444443 45788999999999999999999
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~------~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
.+-|.++-- =++-.|++|+.|.+|++||++-+.++..+... ....|.++++.|.|++|++|-.|....+||++
T Consensus 183 tghilalys-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 183 TGHILALYS-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred cccEEEEEE-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 999987632 25779999999999999999999888877532 23568999999999999999999999999999
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEecCCCCEEEEEEcCCCCCEEE
Q 007757 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~----~~~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
.+..++ .+..| ...|.++.|||...|+++++.|..|++-|+... -++.....|...+..+.|+|++- -++
T Consensus 262 g~r~iq---~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~-sfi 335 (350)
T KOG0641|consen 262 GGRMIQ---RFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF-SFI 335 (350)
T ss_pred CCceee---eeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc-eee
Confidence 887663 44445 567889999999999999999999999998642 23444556889999999999554 577
Q ss_pred EEeCCCcEEEe
Q 007757 579 TCGWDGLIKYW 589 (590)
Q Consensus 579 s~g~DG~I~iW 589 (590)
+.+.|.++.+|
T Consensus 336 sssadkt~tlw 346 (350)
T KOG0641|consen 336 SSSADKTATLW 346 (350)
T ss_pred eccCcceEEEe
Confidence 88889999999
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=220.53 Aligned_cols=256 Identities=21% Similarity=0.374 Sum_probs=221.8
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
+....+++.+|+||+..|+.+.|+|+ ...+++++.|-.|+||.+ ....+......|..+|+.+..+|.|.||++++.|
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~-~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d 324 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSV-PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASND 324 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecc-ccccCccccccccccceeeeeccCCcEEEEecCC
Confidence 34566788999999999999999999 889999999999999999 4556777788999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEccCCC---CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 365 KNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
++..+.|++++.++....... ...+..|+|++ .+|.+|..|+.|++||+.++..+..|.+|.++|..|.|+.+|
T Consensus 325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG 401 (506)
T ss_pred ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc
Confidence 999999999999888776642 24567777765 799999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
-+|+++++|+.|++||++..+..+.+.......+.++.|.+.|.+|+.++.+=+|++++-.+. .......+..| .+.
T Consensus 402 Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~~~~~~~~~--sg~ 478 (506)
T KOG0289|consen 402 YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWTEIKELADH--SGL 478 (506)
T ss_pred eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccc-cceeeehhhhc--ccc
Confidence 999999999999999999999888888777778999999999999999987777777764332 23333444444 467
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 522 ACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.+.+.|....+++++++.|..++++.+
T Consensus 479 st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 479 STGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeeecccceEEeeccchhheEEeec
Confidence 788999999999999999999888754
No 74
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7e-25 Score=217.51 Aligned_cols=283 Identities=18% Similarity=0.293 Sum_probs=231.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC-CeeEEEeccCCCceeEEEEecCCC-EEEEEeCCCeEEEEECCCCc
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-GKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQ 376 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~ 376 (590)
.++|++|.|+|. ..+|++|+.|++++||.+... ...+..+.--..+|.+.+|.|+|. .+++++....+..||+.+.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 468999999999 999999999999999999322 234566666678999999999998 89999999999999999887
Q ss_pred EEEEccCC--C--CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCc
Q 007757 377 VIRTFSTG--K--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 377 ~~~~~~~~--~--~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
..+.-... . ......+++++ ++|+..+..|.|.+....+++.+..++ ..+.|..++|+.+++.|++++.+|.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~---~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDS---NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred cccccCCCCcccchhheeEecCCC---CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCce
Confidence 65543322 1 22234444443 689999999999999999999998886 6788999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee---ecccccccCcccccceEEEEEcC
Q 007757 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|.+||++...++..+.....-.-++++.++++.|||+|+..|.|.|||..+... ..+++.+.. ....|+++.|++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~ 445 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--LTTAITSLQFNH 445 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--hheeeeeeeeCc
Confidence 999999999999988765555667888899999999999999999999765322 222222222 245688999999
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCeEEEEEecCC---CCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 530 DGRFVMSGDG--EGKCWFWDWKSCKVFRTLKCHE---GVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 530 dg~~l~sgs~--dg~I~iwd~~t~~~~~~l~~h~---~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
|+++|+.++. ...+++-.+.+......+.... +.|+|++|+| ++.+||.|-.+|.|.+|
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLF 509 (514)
T ss_pred chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeE
Confidence 9999988874 6689999999988888776543 4689999999 77799999999999999
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=240.25 Aligned_cols=261 Identities=23% Similarity=0.414 Sum_probs=217.7
Q ss_pred CCCccCCcceeEE-ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEE
Q 007757 282 NDHCYIPKRLVHT-WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 282 ~~~~~~p~~~v~~-l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
..|+-.+..++.+ +.||.+.|.+++|..- +..|++|+.|.+++|||+ .++.|..++.+|...|.++... ...+++
T Consensus 231 ~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~--~~~~~s 306 (537)
T KOG0274|consen 231 HLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTID--PFLLVS 306 (537)
T ss_pred EEeecccceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEcc--CceEee
Confidence 3456667777777 9999999999999874 899999999999999998 8999999999999999999885 457888
Q ss_pred EeCCCeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeC
Q 007757 361 ASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p 439 (590)
|+.|.+|++|++.++.++..+.. ...+.++.+. +.++++|+.|+.|.+||+.+++++..+.+|...|.++.+..
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS 381 (537)
T ss_pred ccCCceEEEEeccCcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC
Confidence 99999999999999999999984 4444555554 36899999999999999999999999999999999998865
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccc
Q 007757 440 SNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
. ..+++|+.|++|++||+++. .++..+. .|..-+..+ ...+++|++++.|+.|++||...+..+...... +
T Consensus 382 ~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~-- 453 (537)
T KOG0274|consen 382 E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR--H-- 453 (537)
T ss_pred c-ceEEeeeeccceEeecCCchhhhhhhhc-CCccccccc--ccccceeEeccccccEEEeecccCceeeeeccC--C--
Confidence 4 89999999999999999999 7777664 355555444 346889999999999999999988776544332 2
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 007757 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
.+.+..+++. ...+++++.+|.+.+||++++++...+-.+.
T Consensus 454 ~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 454 VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred cccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 3445556654 4678899999999999999999988774443
No 76
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=211.33 Aligned_cols=296 Identities=17% Similarity=0.304 Sum_probs=234.1
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCe
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
.|.++-+++.... -.|+.|++. |.+||+|+.||.|.|||+ .+...-+.+.+|..+|++++||++|+.|+++|.|..
T Consensus 13 ~PEel~~tld~~~--a~~~~Fs~~-G~~lAvGc~nG~vvI~D~-~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 13 YPEELTHTLDNPL--AECCQFSRW-GDYLAVGCANGRVVIYDF-DTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred ChHhhceeccCCc--cceEEeccC-cceeeeeccCCcEEEEEc-cccchhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 4667777775433 889999999 999999999999999999 677788899999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc----cCCceeEEEEeCCCC
Q 007757 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ----HLGAVNTITFVDSNR 442 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~----h~~~V~~i~~~p~~~ 442 (590)
|.+||+..|.+++.+....++....++|... +.+++.-.+..-.+.++..+.....-.. ......+..|.+.|+
T Consensus 89 i~lwDl~~gs~l~rirf~spv~~~q~hp~k~--n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR--NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred eEEEeccCCCceeEEEccCccceeeeccccC--CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC
Confidence 9999999999999999999999999988654 5666665555566666554321111011 111223446888999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce------eecccccccCc
Q 007757 443 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF------QLNKKKRFAGH 516 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~------~~~~~~~~~~~ 516 (590)
++++|...|.+.++|..+..++..+.......|..+.++..|.+|+..+.|..|+.|+++.-. .+.....+...
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 999999999999999999988877766555789999999999999999999999999986321 11212223333
Q ss_pred ccccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 517 IVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+...-.+++||.+|.|++.|+. ...++||.-..|.+++.+.+.. .....+.|+| -...+++- ..|.|+||.
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWA 320 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEE
Confidence 33344456899999999988874 4569999999999999998877 4678899999 45566666 689999993
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.4e-25 Score=243.56 Aligned_cols=285 Identities=21% Similarity=0.384 Sum_probs=226.8
Q ss_pred ecCC-CCCeeEEEEcCCCCCEEEEEe--CCCcEEEEEccC-----------CCeeEEEeccCCCceeEEEEecCCCEEEE
Q 007757 295 WSGH-TKGVSAIRFFPKYGHLILSAG--MDTKVKIWDVVN-----------SGKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 295 l~gH-~~~V~~l~fsp~~g~~L~sgs--~Dg~I~iWd~~~-----------~~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
|-+| ...|.+|..+|+ +..++||+ .||.+.||+... -.+.+.+...|.+.|+|+.|++||.+||+
T Consensus 8 wv~H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 4455 456999999999 99999999 999999998731 12456677789999999999999999999
Q ss_pred EeCCCeEEEEECCC------------------CcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce
Q 007757 361 ASYDKNIKYWDTET------------------GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~ 421 (590)
||.|+.|.||.... .+++..+..+ ..+.-++|.|+ ..++++++.|++|.+|+.++.+.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~---~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD---DSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC---ccEEEEecccceEEEEcccccee
Confidence 99999999998772 1233444332 23344555553 37999999999999999999999
Q ss_pred EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC-----CCcccEEEEcCCCCEEEEEEc----
Q 007757 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-----MHSMPSISLHPNTNWLAAQSL---- 492 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-----~~~i~~i~~sp~g~~l~s~s~---- 492 (590)
+..+.+|.+.|-.+.|.|-|++|++-++|++|+||.+..-...+.+..+. ...+..+.|+|+|.+|++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 99999999999999999999999999999999999987766666665433 234778999999999998643
Q ss_pred CCeEEEEEccCceeecccccccCcccccceEEEEEcCC-------------CC----EEEEEeCCCcEEEEeCCCCeEEE
Q 007757 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-------------GR----FVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-------------g~----~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
-..+.|.+-.+. ..-..+.|| ...+.++.|+|. .. .+|+|+.|++|.||.....+++.
T Consensus 244 ~~~~~IieR~tW---k~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 244 KSTIAIIERGTW---KVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred cceeEEEecCCc---eeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 235667665432 334567788 457888999882 11 57899999999999998878766
Q ss_pred EEe-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 556 TLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 556 ~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.+. .....|.+++|+| ++..|+.||.||+|.+.
T Consensus 319 vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALI 352 (942)
T ss_pred hhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEE
Confidence 543 2356899999999 77889999999999875
No 78
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.7e-26 Score=213.63 Aligned_cols=288 Identities=19% Similarity=0.366 Sum_probs=234.0
Q ss_pred hccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007757 241 KGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 241 ~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~ 320 (590)
.+++.+++..+...+.++.++.+.|...|+|- +...+|+.++.||.+.|+||+|++. +.++++++.
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs-------------~Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSG 210 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWS-------------LESGACLATYTGHTGSVNSIKFHNS-GLLLLTASG 210 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEe-------------eccccceeeecccccceeeEEeccc-cceEEEccC
Confidence 35666777777788888999999999999993 4456888999999999999999998 999999999
Q ss_pred CCcEEEEEc------cC-----------------------------C----CeeEEEeccCCCceeEEEEecCCCEEEEE
Q 007757 321 DTKVKIWDV------VN-----------------------------S----GKCMRTYMGHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 321 Dg~I~iWd~------~~-----------------------------~----~~~~~~~~~h~~~V~~l~fspdg~~l~s~ 361 (590)
|++.+||.. .. + ..++..+.+|...|.+..|...|..++++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTa 290 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTA 290 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeee
Confidence 999999972 00 1 13556788999999999999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEccCCCCceE-EEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeC
Q 007757 362 SYDKNIKYWDTETGQVIRTFSTGKIPYV-VKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p 439 (590)
+.|++..+||++++.++..+..+..... ++.+ +.+.++++.+.|.+.++||++.. ..+..|.+|...|+++.|.-
T Consensus 291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstH---ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTH---PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred eccccceeeeeccCceeccccCcchhccccccC---CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 9999999999999999999876654432 3333 34589999999999999999854 45778999999999999986
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcE-EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccc--ccCc
Q 007757 440 SNRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR--FAGH 516 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~ 516 (590)
+ ..+++|++|.+|++||+++... +..+ ....++..++++..+..|+.-..+..|++||+... ++..+.. -.+|
T Consensus 368 d-d~vVSgSDDrTvKvWdLrNMRsplATI--RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgH 443 (481)
T KOG0300|consen 368 D-DRVVSGSDDRTVKVWDLRNMRSPLATI--RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGH 443 (481)
T ss_pred C-CceeecCCCceEEEeeeccccCcceee--ecCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCccccccc
Confidence 5 4799999999999999987643 4444 25678999999998889999998999999999754 3433332 3344
Q ss_pred ccccceEEEEEcCCCC--EEEEEeCCCcEEEEeCCCC
Q 007757 517 IVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~t~ 551 (590)
...++|++|..+.. -|++++-|..+.-|.+...
T Consensus 444 --rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 444 --RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred --ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 56789999976543 4778888999999987653
No 79
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.5e-24 Score=233.50 Aligned_cols=238 Identities=16% Similarity=0.241 Sum_probs=182.7
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC-------eeEEEeccCCCceeEEEEecCCCE-E
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------KCMRTYMGHSKAVRDISFCNDGTK-F 358 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~-------~~~~~~~~h~~~V~~l~fspdg~~-l 358 (590)
.....+..+.+|.+.|.+|+|+|+.+++|+||+.||+|+|||+...+ .++..+.+|...|.+++|+|++.. |
T Consensus 62 ~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 62 MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIM 141 (568)
T ss_pred CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEE
Confidence 34457789999999999999999767899999999999999995332 244578899999999999998875 5
Q ss_pred EEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEE--
Q 007757 359 LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT-- 436 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~-- 436 (590)
++++.|++|+|||+++++.+..+.....+.++.|++++ .+|++++.|+.|++||+++++.+..+.+|.+.+.+..
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG---~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG---NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC---CEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 78999999999999999988777666666777777754 6888899999999999999999999999988754433
Q ss_pred ---EeCCCCEEEEEeCCC----cEEEEECCC-CcEEEEeecC-CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceee
Q 007757 437 ---FVDSNRRFVTSSDDK----SLRVWEFGI-PVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 437 ---~~p~~~~l~s~s~Dg----~I~iwdl~~-~~~~~~~~~~-~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 507 (590)
|++++.+|++++.++ +|+|||++. ..++..+... +...+......+++.++++|+.|+.|++|++.... +
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~ 297 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-I 297 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-E
Confidence 347888999988774 799999985 4444443221 22222233334568899999999999999997653 2
Q ss_pred cccccccCcccccceEEEEEcCCC
Q 007757 508 NKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
..+..+ ........++|.|+-
T Consensus 298 ~~l~~~---~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 298 RKVNEY---KSCSPFRSFGFLPKQ 318 (568)
T ss_pred Eeeccc---ccCCCccceEEcccc
Confidence 222222 234556678898864
No 80
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2.5e-26 Score=229.09 Aligned_cols=283 Identities=20% Similarity=0.330 Sum_probs=224.5
Q ss_pred ccCCCCCCcccCC-cceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007757 242 GNAGGEKGEHVED-KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 242 ~~~~~~~~~~~~~-~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~ 320 (590)
++..+.....+-+ +.-++.+++.|..+.+|-. |-..+++++|.||+.+|..++|+++ |..++|+|.
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v------------y~~~~~lrtf~gH~k~Vrd~~~s~~-g~~fLS~sf 278 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV------------YDDRRCLRTFKGHRKPVRDASFNNC-GTSFLSASF 278 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEE------------ecCcceehhhhcchhhhhhhhcccc-CCeeeeeec
Confidence 3334444444444 5667788899999999944 3346899999999999999999999 999999999
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCC
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDK 398 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~ 398 (590)
|+.|++||+ ++|+++..+. -...++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..+ ..+..+.|.+.+
T Consensus 279 D~~lKlwDt-ETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g-- 354 (503)
T KOG0282|consen 279 DRFLKLWDT-ETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG-- 354 (503)
T ss_pred ceeeeeecc-ccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC--
Confidence 999999999 7999988875 34568999999988 89999999999999999999988887654 344566666654
Q ss_pred CcEEEEEEcCCcEEEEECCCCceEEEE-cccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE--EEeecCCCC--
Q 007757 399 QNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEPHMH-- 473 (590)
Q Consensus 399 ~~~lvsg~~dg~I~vwDl~t~~~~~~~-~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~--~~~~~~~~~-- 473 (590)
..+++.+.|+.+++|+.+..-.+... ..+.-...||..+|++.+++.-+.|+.|.+|.+...-.. +....+|..
T Consensus 355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 57999999999999999988655443 223346778999999999999999999999987543221 111223332
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 007757 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd 547 (590)
.-..+.|+|+|.+|++|+.||.+.+||.++...+ ..+..| ...+..+.|+|. ...||+++.+|.|++|+
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~---~~lkah--~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV---SKLKAH--DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEeechhhhhh---hccccC--CcceEEEEecCCCcceeEecccCceeEecC
Confidence 3456889999999999999999999999886555 344455 567888999995 45789999999999996
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=213.19 Aligned_cols=293 Identities=22% Similarity=0.379 Sum_probs=236.4
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeE
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 367 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I 367 (590)
..++++.|.||..+|..++.... ..++.+++.|.+.+||.+ +.+.|+.+|.||.+.|++|.|++.+.++++++.|++-
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~-Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADST-QPICGTASADHTARIWSL-ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred eEeehhhhcccccceeeehhhcC-CcceeecccccceeEEee-ccccceeeecccccceeeEEeccccceEEEccCCcch
Confidence 34678889999999999998877 779999999999999999 7999999999999999999999999999999999999
Q ss_pred EEEECC----CCc------------------------------------EEEEccCCCCceEEEEecCCCCCcEEEEEEc
Q 007757 368 KYWDTE----TGQ------------------------------------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMS 407 (590)
Q Consensus 368 ~vWd~~----t~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~ 407 (590)
.||... ..+ ++..+. ++...+++..+.. .+..+++++.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~-gg~Q~vTaSW 292 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLA-GGQQMVTASW 292 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhc-Ccceeeeeec
Confidence 999621 000 111121 2222233333322 3467999999
Q ss_pred CCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEE
Q 007757 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 487 (590)
Q Consensus 408 dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l 487 (590)
|.+-.+||+++++++..+.+|....+.++-+|..+++++.+.|.+.++||++..........+|...|+++.|..+. .+
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ce
Confidence 99999999999999999999999999999999999999999999999999986655555667899999999998654 68
Q ss_pred EEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE----EEecCCCC
Q 007757 488 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR----TLKCHEGV 563 (590)
Q Consensus 488 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~----~l~~h~~~ 563 (590)
++|+.|.+|++||+++.... +..+. ....+..++++..+..|+.--.+..|++||+...++-+ .-++|...
T Consensus 372 VSgSDDrTvKvWdLrNMRsp--lATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSP--LATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM 446 (481)
T ss_pred eecCCCceEEEeeeccccCc--ceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccccee
Confidence 89999999999999875432 22222 24567789999999999999999999999997655432 33589999
Q ss_pred EEEEEEcCCC-CCEEEEEeCCCcEEEeC
Q 007757 564 CIGCEWHPLE-QSKVATCGWDGLIKYWD 590 (590)
Q Consensus 564 V~~v~~sp~~-~~~l~s~g~DG~I~iWD 590 (590)
|+|++|.... -.-|++||.|..+.-|.
T Consensus 447 V~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 447 VTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeeccccCcccccccccccceeeeeE
Confidence 9999997521 12488999999988874
No 82
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4.7e-24 Score=228.55 Aligned_cols=230 Identities=16% Similarity=0.216 Sum_probs=179.6
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC------eeEEEeccCCCceeEEEEecCC-CEEEEEeCCCe
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKN 366 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~ 366 (590)
.+.||.+.|++++|+|.++++|++|+.|++|+|||+...+ .++..+.+|...|.+++|+|++ ++|++|+.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4779999999999999438899999999999999994332 3577889999999999999975 69999999999
Q ss_pred EEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCc-eeEEEEeCCCCEE
Q 007757 367 IKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~-V~~i~~~p~~~~l 444 (590)
|+|||+++++.+..+..+ ..+..+.|++++ .+|++|+.|+.|++||+++++.+..+..|.+. +..+.|.+++..|
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG---~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDG---SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCC---CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999999988887643 456677787754 68999999999999999999999999888765 4567888888888
Q ss_pred EEEe----CCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCccc
Q 007757 445 VTSS----DDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 445 ~s~s----~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
++++ .|+.|++||++..... ..........+....|++++++|++++ .|+.|++||+.+........ +. .
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~-~~---s 302 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS-YS---S 302 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee-cc---C
Confidence 7764 4789999999875433 222222334455667899999999887 49999999998765433211 11 1
Q ss_pred ccceEEEEEcCC
Q 007757 519 AGYACQVNFSPD 530 (590)
Q Consensus 519 ~~~v~~v~~spd 530 (590)
......++|.|.
T Consensus 303 ~~~~~g~~~~pk 314 (493)
T PTZ00421 303 VEPHKGLCMMPK 314 (493)
T ss_pred CCCCcceEeccc
Confidence 223445677664
No 83
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=210.23 Aligned_cols=278 Identities=14% Similarity=0.225 Sum_probs=224.3
Q ss_pred CCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 007757 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~ 325 (590)
+.-....++..++..+++.|..+-+|-.... .....+.||...|+|+.|+.+ |.+||||+++|.|+
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~g-------------e~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTG-------------EFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVL 131 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCC-------------cceeEecCCCCceEEEEEccC-ceEEEecCCCccEE
Confidence 3334556778889999999999988855433 356788999999999999999 99999999999999
Q ss_pred EEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC-ceEEEEecCCCCCcEEEE
Q 007757 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvs 404 (590)
||.. .++.....+...-..|.-+.|+|.+..|+.|+.||.|-+|.+.++...+.+..+.. ..+-.|.|++ ..+++
T Consensus 132 v~~~-stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG---Kr~~t 207 (399)
T KOG0296|consen 132 VFKV-STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG---KRILT 207 (399)
T ss_pred EEEc-ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC---ceEEE
Confidence 9999 57777777766777888999999999999999999999999999777777766443 3456677764 67999
Q ss_pred EEcCCcEEEEECCCCceEEEEcc------c---------------------------------------------CCcee
Q 007757 405 GMSDKKIVQWDMNTKEITQEYDQ------H---------------------------------------------LGAVN 433 (590)
Q Consensus 405 g~~dg~I~vwDl~t~~~~~~~~~------h---------------------------------------------~~~V~ 433 (590)
|..||+|++|++.+++++..+.+ + ...+.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 99999999999999987766541 0 00111
Q ss_pred EEE---EeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc
Q 007757 434 TIT---FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 434 ~i~---~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 510 (590)
|+. ++..-.++++|+-||+|.|||+......... .|..+|..+.|.+ ..+|++++.+|.|+.||.+++...
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~--- 361 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK--- 361 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccchhheec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceE---
Confidence 111 2222245788999999999999877655554 5888899999998 889999999999999999998665
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 511 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
..+.|| ...|.+++++|+++++++++.|++.+||+..
T Consensus 362 ~~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 362 FTYTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecC--chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 567777 4668889999999999999999999999864
No 84
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=5.7e-24 Score=229.04 Aligned_cols=247 Identities=11% Similarity=0.178 Sum_probs=187.0
Q ss_pred EeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecC-CCEEEEEeCCCeEEEEECCCCc--------EEEEccC-CCCc
Q 007757 318 AGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ--------VIRTFST-GKIP 387 (590)
Q Consensus 318 gs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~--------~~~~~~~-~~~~ 387 (590)
|+.++.|+||+. .....+..+.+|...|.+++|+|+ +.+|++|+.||.|+|||+.++. .+..+.. ...+
T Consensus 50 GG~~gvI~L~~~-~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQ-MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeec-CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 667899999998 455778889999999999999996 7899999999999999998642 1223332 2345
Q ss_pred eEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 007757 388 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 388 ~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~ 467 (590)
.++.|+|.. ..++++++.|+.|++||+++++.+..+. |...|.+++|+++|.+|++++.|+.|+|||++++..+..+
T Consensus 129 ~sVaf~P~g--~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMN--YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCC--CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 567777653 3567899999999999999998877775 5678999999999999999999999999999999888766
Q ss_pred ecCCCCcccE-----EEEcCCCCEEEEEEcCC----eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe
Q 007757 468 SEPHMHSMPS-----ISLHPNTNWLAAQSLDN----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 468 ~~~~~~~i~~-----i~~sp~g~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
. .|.+.+.+ ..|++++.+|++++.++ .|+|||++...... .....+...+.+......++|.++++|+
T Consensus 206 ~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl--~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 206 H-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL--VTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred e-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce--EEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 4 46554433 23458889999988774 79999998633221 1222222233333344456799999999
Q ss_pred CCCcEEEEeCCCCeEEEEEe--cCCCCEEEEEEcCC
Q 007757 539 GEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEWHPL 572 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~--~h~~~V~~v~~sp~ 572 (590)
.|+.|++|++..+.+ ..+. .+..++.+++|.|.
T Consensus 283 GD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 283 GDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 999999999987653 2222 25567889999994
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1e-24 Score=214.68 Aligned_cols=280 Identities=19% Similarity=0.316 Sum_probs=235.7
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
..+|+++...|. ...+++|+.|..+.++|. ...+.+.+|.||...|+.+.|+++...+++++.|..|+||........
T Consensus 219 ~pgi~ald~~~s-~~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIPS-SSKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCeeEEeecCC-CCcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 356888888887 789999999999999999 788999999999999999999999999999999999999998766654
Q ss_pred EEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEccc--CCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007757 379 RTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH--LGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 379 ~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h--~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..... ...+..+..++.+ .+|++++.|++..+.|++++..+...... .-.++++.|+|||..|.+|..|+.|+|
T Consensus 297 ~~~~~h~~~V~~ls~h~tg---eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG---EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cccccccccceeeeeccCC---cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 44433 3444556666654 68999999999999999999877766432 245899999999999999999999999
Q ss_pred EECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007757 456 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
||+..+.....+. +|.++|..++|+.+|-||++++.|+.|++||++..... +.+.-.. ...+.+++|.+.|.+|+
T Consensus 374 wdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~---kt~~l~~-~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 374 WDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF---KTIQLDE-KKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc---ceeeccc-cccceeEEEcCCCCeEE
Confidence 9999988777775 59999999999999999999999999999999875433 3332221 12477899999999999
Q ss_pred EEeCCCcEEEEeC--CCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 536 SGDGEGKCWFWDW--KSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 536 sgs~dg~I~iwd~--~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.++.+=.|++++- +++.++..+..|.+..+++.|.. ...+++++|.|..++++
T Consensus 449 ~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLY 503 (506)
T ss_pred eecceeEEEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEe
Confidence 9988877777763 36788888888998889999988 67799999999998886
No 86
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2.3e-24 Score=200.37 Aligned_cols=285 Identities=19% Similarity=0.293 Sum_probs=225.9
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007757 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~D 321 (590)
+++.+.-.++......++.++..|-....|.. +..+.+-++.||++.|.|+...-+ ...|++|+.|
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s-------------~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD 73 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYS-------------LNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSAD 73 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEe-------------cCCceeeeecCCCceEEEEEecCC-cceeeecccc
Confidence 34444555666677778888888888888854 234667899999999999999998 8999999999
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC-----CCeEEEEECC-------CCcEEEEccC-CCCce
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----DKNIKYWDTE-------TGQVIRTFST-GKIPY 388 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-----Dg~I~vWd~~-------t~~~~~~~~~-~~~~~ 388 (590)
.+++|||+ ..++++.++. ...+|..+.|+++|++++.+.. .+.|.++|++ ...++..+.. ...+.
T Consensus 74 ~t~kLWDv-~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 74 QTAKLWDV-ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred ceeEEEEc-CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999 7899988886 5678999999999998887754 4789999998 3444555544 34455
Q ss_pred EEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 007757 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~ 467 (590)
...|.+.+ ..|++|..+|.|.+||++++ +.+.....|...|+.|+++++..+|+++|.|.+-++||..+...++.+
T Consensus 152 ~a~Wg~l~---~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 152 SALWGPLG---ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeecccC---CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 66666654 68999999999999999998 566666889999999999999999999999999999999999999888
Q ss_pred ecCCCCcccEEEEcCCCCEEEEEEcCCeEEE--EEccCce---------eecccccccCcccccceEEEEEcCCCCEEEE
Q 007757 468 SEPHMHSMPSISLHPNTNWLAAQSLDNQILI--YSTRERF---------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 468 ~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~i--wd~~~~~---------~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
. ...++.+.+++|....++.|+.....-+ -+.+.++ ....+...++| -++|++++|+|+|+..++
T Consensus 229 ~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 229 T--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSYSS 304 (327)
T ss_pred e--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCccccc
Confidence 4 5678999999998888777654332222 2222221 01223456777 688999999999999999
Q ss_pred EeCCCcEEEEeCC
Q 007757 537 GDGEGKCWFWDWK 549 (590)
Q Consensus 537 gs~dg~I~iwd~~ 549 (590)
|+.||.|++.-..
T Consensus 305 GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 305 GGEDGYVRLHHFD 317 (327)
T ss_pred CCCCceEEEEEec
Confidence 9999999997554
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=205.46 Aligned_cols=298 Identities=16% Similarity=0.275 Sum_probs=218.3
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC----CCeeEEEeccCCCceeEEEEecCCCEEEE
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN----SGKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~----~~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
.+.-+-.+.+|+||.+.|++++|+.+ |+.|+|++.|++|+||++.. ..++++.-. .-+.-+.+.|+||.+-++.
T Consensus 72 ~f~Hpl~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 72 TFVHPLNVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVV 149 (420)
T ss_pred CcccchhhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEE
Confidence 34444456789999999999999999 99999999999999999842 112333211 1124578999998876654
Q ss_pred E-eCCCeEEEEECCCC---cEEE--------EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEccc
Q 007757 361 A-SYDKNIKYWDTETG---QVIR--------TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 428 (590)
Q Consensus 361 ~-s~Dg~I~vWd~~t~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h 428 (590)
. -...++++|-+... .... .|...+...++.+-.- ++..+|++++.|..|.+|+++ |+.++.+...
T Consensus 150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 4 44568999976422 1111 1222233333333322 345789999999999999999 9999999888
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-----c-EEEE-eecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-----V-VIKY-ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-----~-~~~~-~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
...-...+.+|+|+++++++-.--|++|.+--. + ..+. ...+|...|..++|+++...+++.+.||.++|||+
T Consensus 228 q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 788888999999999999999999999986211 1 1111 12468899999999999999999999999999998
Q ss_pred cCceee----cccccc--cCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCCCEEEEEEcCCCC
Q 007757 502 RERFQL----NKKKRF--AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 502 ~~~~~~----~~~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~ 574 (590)
.-.... ..++.. .-+...+.-+.+.++|.|+.|+... ...|.++..++++.+..+. .|...|.+++|++ ++
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g 385 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DG 385 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CC
Confidence 643221 112222 1222344456899999999988765 4479999999998887775 6999999999999 78
Q ss_pred CEEEEEeCCCcEEEe
Q 007757 575 SKVATCGWDGLIKYW 589 (590)
Q Consensus 575 ~~l~s~g~DG~I~iW 589 (590)
.+++||| |..+++.
T Consensus 386 ~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 386 KYIATCG-DRYVRVI 399 (420)
T ss_pred cEEeeec-ceeeeee
Confidence 8999999 5666653
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.5e-24 Score=199.64 Aligned_cols=271 Identities=18% Similarity=0.225 Sum_probs=228.2
Q ss_pred CCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 247 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 326 (590)
Q Consensus 247 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~i 326 (590)
.......-..+.++.+..|...+.|...+... .. -...+||.+.|-.++|+|....+|++++.|.+|++
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--~~---------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--RK---------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhh--hh---------hhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 33445556667778888899999997655421 11 12456999999999999998999999999999999
Q ss_pred EEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEE
Q 007757 327 WDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 406 (590)
Q Consensus 327 Wd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~ 406 (590)
||+ ..++++.......+. .-+.|+|+|.+++.++.|..|.+.|.++.+.+...+......-++|+.++ ++|+...
T Consensus 92 wd~-r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n---d~Fflt~ 166 (313)
T KOG1407|consen 92 WDI-RSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN---DLFFLTN 166 (313)
T ss_pred EEe-ccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC---CEEEEec
Confidence 999 577777776544444 45889999999999999999999999999998888777777667777433 6777777
Q ss_pred cCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCE
Q 007757 407 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 407 ~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
..|+|.|......++++.++.|.....||.|+|+|++|++|+.|..+.+||+....+.+.+.. +..+|..+.|+.+|++
T Consensus 167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-ldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-LDWPVRTLSFSHDGRM 245 (313)
T ss_pred CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-ccCceEEEEeccCcce
Confidence 789999999999999999999999999999999999999999999999999999988888875 8889999999999999
Q ss_pred EEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC
Q 007757 487 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 487 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
||+++.|..|-|=++.++.++..+.. .+....++|+|...+||-++.|
T Consensus 246 lASaSEDh~IDIA~vetGd~~~eI~~------~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 246 LASASEDHFIDIAEVETGDRVWEIPC------EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccCccceEEeEecccCCeEEEeec------cCCceeEEecCCCceeeEEecC
Confidence 99999999999999999877755443 4556679999999999877654
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.8e-24 Score=204.21 Aligned_cols=263 Identities=18% Similarity=0.269 Sum_probs=206.3
Q ss_pred EEEEeCCCcEEEEEccCCC-----------eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC
Q 007757 315 ILSAGMDTKVKIWDVVNSG-----------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 315 L~sgs~Dg~I~iWd~~~~~-----------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
|++|+....|.-+++.... .++..+..|.++|++++. ++.++++||.|-+|+|||+.+...+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 5666666666655552211 235567889999999999 488999999999999999998877766544
Q ss_pred -CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 007757 384 -GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 384 -~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
...+.++.|.+.... +.|++|+.||.|.+|+.....++..+++|.+.|+.|+++|.++.-++.+.|+.+++|++-.++
T Consensus 82 HagsitaL~F~~~~S~-shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSK-SHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred cccceEEEEecCCcch-hheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 345556666655432 479999999999999999999999999999999999999999999999999999999997776
Q ss_pred EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCc
Q 007757 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 542 (590)
Q Consensus 463 ~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~ 542 (590)
.-.... .....+.+.|+|.|.+|+++..+ .|-+|.+.+...+..... ...+.++.|- ++..|++|..++.
T Consensus 161 ~a~v~~--L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~------~~r~l~~~~l-~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 161 VAFVLN--LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN------PKRILCATFL-DGSELLVGGDNEW 230 (362)
T ss_pred cceeec--cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc------cccceeeeec-CCceEEEecCCce
Confidence 554443 23344559999999999987754 588998876433322111 1223334443 5778999999999
Q ss_pred EEEEeCCCCeEEEEEecCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEeC
Q 007757 543 CWFWDWKSCKVFRTLKCHEGVCIGCEWHP-LEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 543 I~iwd~~t~~~~~~l~~h~~~V~~v~~sp-~~~~~l~s~g~DG~I~iWD 590 (590)
|.+||..+..++..+.+|...|-++.+.. ....+|+|+|.||.|+|||
T Consensus 231 i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99999999999999999999999998432 2567999999999999997
No 90
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.5e-24 Score=204.26 Aligned_cols=273 Identities=18% Similarity=0.263 Sum_probs=220.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
...|++|.|+|. +..|+.++.||.+++|++. .. .++....|..++.+++|.+ ...+++|+.||.|+++|+.++...
T Consensus 13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~-~~-~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDVP-AN-SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCc-CCcEEEEeccCcEEEEecc-ch-hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 467999999988 6777777899999999993 33 4444446999999999997 567999999999999999999988
Q ss_pred EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007757 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
..-.+...+.++...+.. ..+++|+.|++|++||.+....+..+.. ...|.++... ++.|++|+.+..|.+||+
T Consensus 89 ~igth~~~i~ci~~~~~~---~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEV---GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred eeccCCCceEEEEeeccC---CeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 888888888888888644 5799999999999999998666666543 3488888875 779999999999999999
Q ss_pred CCCcEEEEe-ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCc-eeecccccccCcc-------cccceEEEEEcC
Q 007757 459 GIPVVIKYI-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER-FQLNKKKRFAGHI-------VAGYACQVNFSP 529 (590)
Q Consensus 459 ~~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~~-------~~~~v~~v~~sp 529 (590)
++.....+. .......+.++++-|++.-+++++-||.|.+=.+... ....+...|+.|. ..-+|.+++|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 886554322 2345667999999999888999999999988655543 1122223344442 234688999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
-...|++|+.||.|.+||+.+.+.+..+..-...|.+++|+. ++..||+++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 999999999999999999999999998887777899999999 6778888774
No 91
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.4e-25 Score=228.95 Aligned_cols=294 Identities=15% Similarity=0.257 Sum_probs=233.7
Q ss_pred EEecCCCCCeeEEEEcCCC----------CCEEEEEeCCCcEEEEEccC--CCeeEE-----------------------
Q 007757 293 HTWSGHTKGVSAIRFFPKY----------GHLILSAGMDTKVKIWDVVN--SGKCMR----------------------- 337 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~----------g~~L~sgs~Dg~I~iWd~~~--~~~~~~----------------------- 337 (590)
+.+--|+..|..|.-.|-+ ...+++|+.|++|++|++.. .+...+
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 3444688888888776621 24689999999999999832 001100
Q ss_pred -----------EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEE
Q 007757 338 -----------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAG 405 (590)
Q Consensus 338 -----------~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg 405 (590)
...+....|++++.+|+|++|++|..-|+|+||++...+....+..+ ..+.|+.++...-...+|+++
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence 00123456999999999999999999999999999887766655543 344566666555556789999
Q ss_pred EcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeCCC--CEEEEEeCCCcEEEEECCCCcEEEEeec----CCCCcccEE
Q 007757 406 MSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSN--RRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHSMPSI 478 (590)
Q Consensus 406 ~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p~~--~~l~s~s~Dg~I~iwdl~~~~~~~~~~~----~~~~~i~~i 478 (590)
+.|..|++||+... .+++++.+|...|+++.|...| ..+++++.|+.|.+--.+.......+.. .....+..|
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 99999999999654 6888999999999999999877 7899999999887544332222222211 123457889
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 007757 479 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 479 ~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
++.|+.+++++++.|..|+||++.+++....++...+| .+....+...|.|.||++.+.|.+|.|+|..+++++..+.
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~--eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH--EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccC--CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 99999999999999999999999998887666655555 5777889999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 559 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 559 ~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+|...|+.+.|.+ +-..|++.+.||+|.||
T Consensus 681 GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLN-DCKHLISVSGDGCIFVW 710 (1080)
T ss_pred Ccchheeeeeecc-cchhheeecCCceEEEE
Confidence 9999999999999 67789999999999999
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.9e-25 Score=229.61 Aligned_cols=314 Identities=18% Similarity=0.295 Sum_probs=240.1
Q ss_pred eecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC-eeE
Q 007757 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCM 336 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~-~~~ 336 (590)
++-+++.|.+.|.|-..... .......+.+++.|+..|+.+...-+ ++.|+|+|.|.+|++|+..... -|+
T Consensus 39 yLfTgGRDg~i~~W~~~~d~-------~~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDS-------NEPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred eEEecCCCceEEEecccccc-------CCcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhH
Confidence 67788999999999654322 11222256788999999999999988 8899999999999999994333 688
Q ss_pred EEeccCCCceeEEEE-ecCCCEEEEEeCCCeEEEEECCCC--cEEEEccC--------CC--CceEEEEecCCCCCcEEE
Q 007757 337 RTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETG--QVIRTFST--------GK--IPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 337 ~~~~~h~~~V~~l~f-spdg~~l~s~s~Dg~I~vWd~~t~--~~~~~~~~--------~~--~~~~~~~~~~~~~~~~lv 403 (590)
.++..|...|.|+++ .++..++++|+.|+.|.|||++++ +.+.++.. +. .++.++..+. +.+|+
T Consensus 111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t---~t~iv 187 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT---GTIIV 187 (735)
T ss_pred hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc---ceEEE
Confidence 899999999999999 778889999999999999999988 33333221 22 2344444433 36899
Q ss_pred EEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC
Q 007757 404 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 404 sg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
+|+..+.|++||.++++.+..+.+|...|.++..+++|..++++|.||+|++||++...++.++.. |...+.++..+|+
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~e~VWaL~~~~s 266 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HKEGVWALQSSPS 266 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-ccCceEEEeeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999988764 7778999999999
Q ss_pred CCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------eEEE-
Q 007757 484 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-------KVFR- 555 (590)
Q Consensus 484 g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~-------~~~~- 555 (590)
-.++++|+.||.|..-|+++......+..- ..++..+..+.+.+-+.+++.|+.|+-|...-. .+..
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~-----daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~ 341 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKE-----DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFF 341 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecC-----CCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcc
Confidence 999999999999999999874222111111 122333455544444567778888888864321 1110
Q ss_pred -----------------EEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 556 -----------------TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 556 -----------------~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+.+ ...|...+... +.+.++|=...|.+.+||
T Consensus 342 ~T~~~~~~~~~~~tp~~vi~G-g~ai~k~~mL~-dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 342 STDSNNHSCDLTNTPDSVIPG-GAAIKKHAMLN-DKRHVLTKDAKGNVALWD 391 (735)
T ss_pred cccCCCccccccCCCceeccC-chhhhhhhhhc-CcceEeeecCCCCEEEEE
Confidence 1111 11233444444 677899999999999998
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.2e-25 Score=216.86 Aligned_cols=280 Identities=19% Similarity=0.338 Sum_probs=220.1
Q ss_pred CCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 007757 248 KGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW 327 (590)
Q Consensus 248 ~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iW 327 (590)
+-..+.....+++++..|.+.-.|...+.. -.++.+++.||..+|.-|.|+|+ .++|++|+.|..+.+|
T Consensus 228 Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~----------~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 228 WFLQFSHNGKYLASASKDSTAIIWIVVYDV----------HFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLW 296 (519)
T ss_pred EEEEEcCCCeeEeeccCCceEEEEEEecCc----------ceeeeeeeecccCceEEEEECCC-CCeEEecCchHheeec
Confidence 345577777888888888888888665432 14788999999999999999999 8999999999999999
Q ss_pred EccCCCeeEEEec-cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC--ceEEEEecCCCCCcEEEE
Q 007757 328 DVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 328 d~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvs 404 (590)
|+ .++.+...+. +|...+.+++|.|||..|++|+.|+.|..||++.. .+........ +..+++.+++ ..+++
T Consensus 297 Dv-~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dg---k~vl~ 371 (519)
T KOG0293|consen 297 DV-DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDG---KYVLL 371 (519)
T ss_pred cC-CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCC---cEEEE
Confidence 99 6777776664 35689999999999999999999999999999744 3333333332 3455555544 56777
Q ss_pred EEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC--cccEEEEcC
Q 007757 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--SMPSISLHP 482 (590)
Q Consensus 405 g~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~--~i~~i~~sp 482 (590)
.+.|..|++++..+......+ ....+|++++.+.+++++++.-.+..+++||+.....+..+. +|.. .+..-||-.
T Consensus 372 v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGG 449 (519)
T ss_pred Eecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCC
Confidence 789999999999876544333 355789999999999999999999999999998776665543 2332 233444543
Q ss_pred -CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCC
Q 007757 483 -NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 483 -~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~t 550 (590)
+..++++|+.|+.|+||+..++..+ ..+.|| ...+.+++|+|. -.++|+++.||+|+||....
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll---~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLL---AVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCcee---EeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 4589999999999999999887665 567788 577899999994 56789999999999998653
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.1e-25 Score=219.19 Aligned_cols=247 Identities=22% Similarity=0.345 Sum_probs=204.2
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEec-CCCEEEEEeCCCeEEE
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKY 369 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~v 369 (590)
.++++.-....|+++.|-.+ |.+|+.|...|.|+|||. .+...++.+.+|+.+|..+.|+| ++..|++|+.|+.+++
T Consensus 60 ~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred hhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 34455667788999999999 999999999999999996 67788899999999999999999 5667888999999999
Q ss_pred EECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeCCCCEEEEEe
Q 007757 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
||+.+......+ .++..++-+....+.+.+++++|+.||.|++||+++. ..+.++ .|..+|..+.+.|.|..+++++
T Consensus 138 ~d~s~a~v~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 138 WDLSTAYVQAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred EEcCCcEEEEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC
Confidence 999998863333 4444444444444455589999999999999999987 666666 4999999999999999999988
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEc
Q 007757 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
. ..|++||+.++.........|...|+|+++..++..|++++.|+.|++||+.+.+.... -...++|.+++.+
T Consensus 216 G-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s------~~~~~pvLsiavs 288 (487)
T KOG0310|consen 216 G-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS------WKYPGPVLSIAVS 288 (487)
T ss_pred C-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe------eecccceeeEEec
Confidence 5 67999999866555544445889999999999999999999999999999766443322 2235778899999
Q ss_pred CCCCEEEEEeCCCcEEEEeC
Q 007757 529 PDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~ 548 (590)
|+++.++.|-.+|.+.+-+.
T Consensus 289 ~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 289 PDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred CCCceEEEecccceeeeehh
Confidence 99999999999999888744
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.1e-24 Score=222.29 Aligned_cols=278 Identities=18% Similarity=0.336 Sum_probs=226.4
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCee--EEEeccCCCceeE-EEEec-CCCEEEEEeCC
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC--MRTYMGHSKAVRD-ISFCN-DGTKFLTASYD 364 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~--~~~~~~h~~~V~~-l~fsp-dg~~l~s~s~D 364 (590)
.++-+.+.||...|..+++.+. -.++++|.||++++|+-. ..+. ...+.+|.+.|.+ +++-+ ++-.|++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEecCC--eEEeecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 3577899999999999998765 589999999999999973 3332 3457788888877 88886 55569999999
Q ss_pred CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE
Q 007757 365 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
.+|.+|.+....++..+..+.. .+++++...+ ..+++|+.|.++++|-+ +++...+.+|...|.++...|.+ .+
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~s-nVC~ls~~~~--~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKS-NVCSLSIGED--GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred ceEEEEecCCCCchhhhhcccc-ceeeeecCCc--CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cE
Confidence 9999999999999988866544 4444444333 23999999999999965 45667799999999999999988 99
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEE
Q 007757 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
+|||.|++|++|.- +..++.+. +|...|+.+++-+++ .|++++.||.|++|++.. ..+ ..+.+| ..++.+
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-e~l---~~~~gh--tn~vYs 224 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-EVL---LEMHGH--TNFVYS 224 (745)
T ss_pred EeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-cee---eeeecc--ceEEEE
Confidence 99999999999985 55666665 599999999999765 578889999999999944 333 445666 566778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
++...++..+++++.|++++||+.. .+.+.+......|+++.+.+ ++ -|++|++||.||||
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-Ng-DIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NG-DIVVGGSDGRVRVF 285 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CC-CEEEeccCceEEEE
Confidence 8888888999999999999999876 77788876666899999887 44 38889999999998
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.2e-25 Score=213.87 Aligned_cols=283 Identities=19% Similarity=0.310 Sum_probs=226.3
Q ss_pred cCCCCCCcccCCcc-eeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007757 243 NAGGEKGEHVEDKS-TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 243 ~~~~~~~~~~~~~s-~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~D 321 (590)
++.+....+-++.. ....+++.|.++|+| ++-...++.+|+.|.+.|..|++.. ..+++++.|
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiW-------------nlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdD 128 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIW-------------NLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDD 128 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEE-------------ehhhhhhhheeecccCceeeEEecc---cceEEecCC
Confidence 33344444444443 445788999999999 3445578899999999999999985 578999999
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCC-CceEEEEecCCCCCc
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQN 400 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~ 400 (590)
.+|+.|.+ .+.+++++.+ ...+..|.-+..+..|+||+. .|.|||.+...+++.+..+. .+.++.++|... +
T Consensus 129 KtvK~wk~--~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--s 201 (433)
T KOG0268|consen 129 KTVKQWKI--DGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET--S 201 (433)
T ss_pred cceeeeec--cCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--h
Confidence 99999998 4467777764 345777777777888999984 69999999999999887764 456777877654 7
Q ss_pred EEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEE
Q 007757 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
+|+++.+|+.|.+||++++.++..+. ....-+.|+|+|..-.|++++.|..++.||++...........|.+.|..+.|
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred heeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc
Confidence 89999999999999999998877663 34456889999988899999999999999998876666666679999999999
Q ss_pred cCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 007757 481 HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 481 sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~ 553 (590)
+|.|+-|++||.|.+|+||..+.+.......+ .....|.++.||.|.+|+++|+.|+.|++|.....+.
T Consensus 281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYht----kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT----KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred CCCcchhccccccceEEEeecCCCcchhhhhH----hhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 99999999999999999999876533221111 1134577899999999999999999999998765443
No 97
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=213.19 Aligned_cols=301 Identities=16% Similarity=0.218 Sum_probs=221.5
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCC-CEEEEEeCCCcEEEEEc---cCCCeeEEEeccCCCceeEEEEec-CCCEEEEE
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYG-HLILSAGMDTKVKIWDV---VNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTA 361 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g-~~L~sgs~Dg~I~iWd~---~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~ 361 (590)
........++-|.+.|++++|+|... +++++|..-|.|-+||+ .....-+..+..|+.+|.+|.|+| +...+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 33445566778999999999999855 78999999999999999 334455677889999999999999 66799999
Q ss_pred eCCCeEEEEECCCCcEEEEccCCCC-ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce-EEEEcccCCceeEEEEeC
Q 007757 362 SYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~-~~~~~~h~~~V~~i~~~p 439 (590)
|+||+|++-|++++..-..+..... .....+.....+ ..++.|..=|.+.+||++++.. ...+.-|...|++|+++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 9999999999998755444433222 222222222223 4566666667999999998754 556667888999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCcEEE---EeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc---Cceeeccccc
Q 007757 440 SNR-RFVTSSDDKSLRVWEFGIPVVIK---YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKR 512 (590)
Q Consensus 440 ~~~-~l~s~s~Dg~I~iwdl~~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~---~~~~~~~~~~ 512 (590)
... +|+++|.|++++|||++...... ....+|...|.+..|+|.+..|++.+.|+.|+|||.. ....... ..
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~-~I 411 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG-TI 411 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc-ee
Confidence 765 57899999999999997643222 2223699999999999998889999999999999984 1111110 01
Q ss_pred ccCcccc--cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC-CEEE-EEEcCCCCCEEEEEeCCCcEEE
Q 007757 513 FAGHIVA--GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG-VCIG-CEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 513 ~~~~~~~--~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~-~V~~-v~~sp~~~~~l~s~g~DG~I~i 588 (590)
...+... -......|.|+..+|++|..-..|-|+|-..++++..+..... .|.+ ..|||.+..+++-++..|.|.|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 1111111 1233578999999999999999999999999998887654433 3444 4899954446666667888988
Q ss_pred e
Q 007757 589 W 589 (590)
Q Consensus 589 W 589 (590)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1e-24 Score=217.65 Aligned_cols=278 Identities=15% Similarity=0.306 Sum_probs=228.0
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC--eeEEEec--cCCCceeEEEEecCCCEEEEEeCCCeEEEEEC
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~--~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
.|..-|.++.++.. .+.++||+. |.|+|||+...+ .++..+. .....|+++.+.|||+.|++|++-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 68888999999988 788999885 789999995433 2333332 24567999999999999999999999999999
Q ss_pred CCCcEEEEccCCC-C--ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC
Q 007757 373 ETGQVIRTFSTGK-I--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 373 ~t~~~~~~~~~~~-~--~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
......-...... . .+.+.++++. ++.++++.||.|.|||+.+..+++.|.+|...+.||.++++|..|.+|+-
T Consensus 495 AapTprikaeltssapaCyALa~spDa---kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDA---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCcc---ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 8765433332222 2 2344555543 68999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|.+|+.||++....+... .....|.++.++|++.+|++|-.++.+.+....... .+.-|.+...|.++.|++
T Consensus 572 DntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLHLHESCVLSLKFAY 643 (705)
T ss_pred ccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCcc------ceeecccccEEEEEEecc
Confidence 999999999988766543 356679999999999999999999999998776532 223344477889999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.|+++++.+.|..+..|...-|..+...+ -...|.+|.++. +..+|+||+.|..-.||
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATVY 701 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEEE
Confidence 99999999999999999999988877766 356799999998 67899999999876665
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=9e-23 Score=206.83 Aligned_cols=269 Identities=17% Similarity=0.202 Sum_probs=201.4
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEE-EEEeCCCeEEEEECCCCcEEEEccCCCCceEEE
Q 007757 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
.++++++.|+.|++||+ .+++++..+..+. .+.+++|+|++..+ ++++.++.|++||+.+++.+..+..+..+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~-~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDT-ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEEC-CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 57889999999999999 5777888887654 47889999999876 566788999999999999888776655556666
Q ss_pred EecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCC-cEEEEECCCCcEEEEeecC
Q 007757 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg-~I~iwdl~~~~~~~~~~~~ 470 (590)
+++++ ..+++++..++.|++||+++.+.+..+.. ...+.++.|+|++.++++++.++ .+.+||..+......+.
T Consensus 80 ~~~~g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-- 154 (300)
T TIGR03866 80 LHPNG--KILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-- 154 (300)
T ss_pred ECCCC--CEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--
Confidence 66644 24555566789999999999887777653 34568899999999999988775 46778988776665543
Q ss_pred CCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeeccccccc-C-cccccceEEEEEcCCCCEEEEE-eCCCcEEEE
Q 007757 471 HMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFA-G-HIVAGYACQVNFSPDGRFVMSG-DGEGKCWFW 546 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~-~-~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iw 546 (590)
....+.+++|+|++.+|++++ .++.|.+||+.+........... + +........++|+|++++++++ ..++.|.+|
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 233467899999999886554 68999999998765443322110 0 1011223468899999986554 456789999
Q ss_pred eCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEE-eCCCcEEEeC
Q 007757 547 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 590 (590)
Q Consensus 547 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~-g~DG~I~iWD 590 (590)
|+.+++.+..+. +...+.+++|+| ++.+|+++ +.+|.|++||
T Consensus 235 d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 235 DAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEE
Confidence 999998876654 445789999999 55566665 6799999997
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=199.93 Aligned_cols=249 Identities=21% Similarity=0.363 Sum_probs=200.6
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC--eeEEEeccCCCceeEEEEec--CCCEEEEEeCCCeEEEEE
Q 007757 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd 371 (590)
..|...|..+...-- |.+|+||+.|++|+|+.+.+.+ .++.++.||.++|..++|.. .|.+|++|++||.|.||.
T Consensus 8 t~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 478888888877666 9999999999999999997766 68889999999999999977 899999999999999999
Q ss_pred CCCCcEEEEcc---CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC---ceEEEEcccCCceeEEEEeCC---C-
Q 007757 372 TETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDS---N- 441 (590)
Q Consensus 372 ~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~---~~~~~~~~h~~~V~~i~~~p~---~- 441 (590)
-++++-.+... +.....++++.|+.. +.+|+++++||.|.+++.++. ........|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred cCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 98885433322 234567888888764 578999999999999998765 223345679999999999986 4
Q ss_pred ----------CEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcCCC----CEEEEEEcCCeEEEEEccCcee
Q 007757 442 ----------RRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNT----NWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 442 ----------~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g----~~l~s~s~dg~I~iwd~~~~~~ 506 (590)
+.|++|+.|..|+||+.....-+ ......|..-|+.++|.|.- .+|++++.||.+.||..+....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 57999999999999999875322 22235689999999999974 5799999999999998774322
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
......+.. ....+..+.||..|++|++++.|..|.+|.-
T Consensus 246 ~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 246 PWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 222222322 2456788999999999999999999999964
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.3e-25 Score=226.29 Aligned_cols=285 Identities=21% Similarity=0.349 Sum_probs=226.8
Q ss_pred CCCCCee---EEEEcCCCCCEEEEEeCCCcEEEEEccCCCe-----eEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 297 GHTKGVS---AIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-----CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 297 gH~~~V~---~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~-----~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
.|...|. .+..+..++++|+|||.||.|++|++..... ++..+..|...|+++....+++.|++||.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3455555 6666766688999999999999999854332 5777889999999999999999999999999999
Q ss_pred EEECCCC--cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC--ceEEE--------Ec-ccCCceeEE
Q 007757 369 YWDTETG--QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQE--------YD-QHLGAVNTI 435 (590)
Q Consensus 369 vWd~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~--~~~~~--------~~-~h~~~V~~i 435 (590)
+|+...+ -++.++.. |.-++-++.+...+..++++|+-|+.|.+||+.++ +++.+ +. ++..+|.++
T Consensus 99 ~W~~~~~~~~c~stir~-H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRT-HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EeecccCcchhHhhhhc-ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 9999877 35555543 33344444442344578999999999999999987 23332 22 678899999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccC
Q 007757 436 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 436 ~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 515 (590)
+.++.+..|++|+..+.|++||.++...+..+. +|...|.++.++++|..+++++.||+|++||+....++.. +..
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T---~~v 253 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT---YIV 253 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee---EEe
Confidence 999999999999999999999999998888887 7999999999999999999999999999999988766643 444
Q ss_pred cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 516 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
| ...+.++..+|+-..+++|+.||.|..=|+.+......+-....+|..+..+.++.+. -++..|+.|+-|
T Consensus 254 H--~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW 324 (735)
T KOG0308|consen 254 H--KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRW 324 (735)
T ss_pred c--cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceec
Confidence 5 3448889999999999999999999999998853332232345567777777544443 566778888887
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.3e-23 Score=218.42 Aligned_cols=296 Identities=22% Similarity=0.349 Sum_probs=243.6
Q ss_pred CCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCE-EEEE
Q 007757 283 DHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTK-FLTA 361 (590)
Q Consensus 283 ~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~-l~s~ 361 (590)
.|++-..+++++++++...|+++.=+|- -..++.|..+|+|.|+++ ..++.+.+++...+.|+.++|..||+. +++|
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNl-K~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNL-KFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEc-ccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 3577788999999999999999999998 889999999999999999 688888888866799999999999975 4556
Q ss_pred eCCCeEEEEECCCCcEEEEccC----------------------------------------------C--CCceEEEEe
Q 007757 362 SYDKNIKYWDTETGQVIRTFST----------------------------------------------G--KIPYVVKLN 393 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~----------------------------------------------~--~~~~~~~~~ 393 (590)
+..|.+.+||++..+.+..... + .++.++.+.
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 6669999999874322211100 0 000011100
Q ss_pred cC------------------------------------------------------------------------------
Q 007757 394 PD------------------------------------------------------------------------------ 395 (590)
Q Consensus 394 ~~------------------------------------------------------------------------------ 395 (590)
-.
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 00
Q ss_pred ---------------------------------CCCCcEEEEEEcCCcEEEEECCCCceEEEE---cccCCceeEEEEeC
Q 007757 396 ---------------------------------DDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVD 439 (590)
Q Consensus 396 ---------------------------------~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~---~~h~~~V~~i~~~p 439 (590)
..-+++.+.|.+.|.|-+|++.+|-....| ..|.++|++++...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 001356778888999999999999888888 58999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccc
Q 007757 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
-++.+++++.+|.+++||+.....+..+. ...+++++..+.....++++..|-.|+++|..+... ...|.|| .
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv---vR~f~gh--~ 576 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV---VREFWGH--G 576 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh---hHHhhcc--c
Confidence 99999999999999999999988777764 566899999999999999999999999999987543 3567778 5
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCC-CcEEEe
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD-GLIKYW 589 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D-G~I~iW 589 (590)
..++.++|||||++|++++.|++|++||+.++.++-.+. -..+++++.|+| ++.+|||...| .-|++|
T Consensus 577 nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP-ngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 577 NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP-NGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC-CCCEEEEEEecCceEEEE
Confidence 779999999999999999999999999999999998886 466889999999 78899999998 559998
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=4e-25 Score=203.52 Aligned_cols=243 Identities=17% Similarity=0.364 Sum_probs=212.7
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007757 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~D 321 (590)
+++|..+...+....+..++...|..++.|-+... ..+++| .|..-|.+++|+.+ .++|++|+.+
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tg-------------delhsf-~hkhivk~~af~~d-s~~lltgg~e 121 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG-------------DELHSF-EHKHIVKAVAFSQD-SNYLLTGGQE 121 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhh-------------hhhhhh-hhhheeeeEEeccc-chhhhccchH
Confidence 34455555556666666678889999999966443 334554 58888999999999 8999999999
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcE
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
..++|||+.....+...+.+|.+.|+.+.|....+.|++++.|++||+||.+++..++++...+.+..+.++.++.
T Consensus 122 kllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~---- 197 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR---- 197 (334)
T ss_pred HHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC----
Confidence 9999999977778888999999999999999999999999999999999999999999999999999999998765
Q ss_pred EEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEc
Q 007757 402 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 481 (590)
Q Consensus 402 lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~s 481 (590)
+++....+.|.+||..+-.++..++ -...|.+..++|+...|++|+.|..++.||+.++..+......|.++|.|+.|+
T Consensus 198 ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 198 ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS 276 (334)
T ss_pred EEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence 7777778999999999999888886 456789999999999999999999999999999999888777899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEccCc
Q 007757 482 PNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 482 p~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
|+|...++|+.||+|++|.+...
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCCceeeccCCCceEEEEEecCC
Confidence 99999999999999999987654
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.9e-23 Score=198.58 Aligned_cols=267 Identities=14% Similarity=0.272 Sum_probs=209.9
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCC--EEEEEe
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT--KFLTAS 362 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~--~l~s~s 362 (590)
+-.....+..+..|.++|++++.+ +.+++|||.|-+|+|||+ .....+..+..|.+.|+++.|.+.-. .|++|+
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm-~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDM-RKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred cceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEec-cchhhhcceeccccceEEEEecCCcchhheeeec
Confidence 334445678889999999999996 889999999999999999 67788888899999999999999664 899999
Q ss_pred CCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 363 YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
.||.|.+|+.....++..+..+ +.+..+.++|.+ .+.++.+.|+.+++||+-.|+.-..+.- ....+.+.|+|.|
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~---KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~G 180 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG---KLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQG 180 (362)
T ss_pred CCCcEEEEEcCCeEEeeeecccccccceeEecCCC---ceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCC
Confidence 9999999999999999988764 346677777765 6889999999999999998876555432 2233449999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
.+|+.++.++ |-+|.+........+..+ ..+.++.|. ++.+|++|..|+.|.+||..+... ...+.+|. ..
T Consensus 181 d~F~v~~~~~-i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~---~~~~~AH~--~R 251 (362)
T KOG0294|consen 181 DHFVVSGRNK-IDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTP---LTEFLAHE--NR 251 (362)
T ss_pred CEEEEEeccE-EEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCcc---ceeeecch--hh
Confidence 9999988754 889999887776666443 345566655 577899999999999999987433 35566664 34
Q ss_pred eEEEE--EcCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEEecCCCCEEEEEE
Q 007757 522 ACQVN--FSPDGRFVMSGDGEGKCWFWDWKSC-----KVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 522 v~~v~--~spdg~~l~sgs~dg~I~iwd~~t~-----~~~~~l~~h~~~V~~v~~ 569 (590)
|-.+. -.|++.||+++++||.|++||+... +++..+.. ...++|+..
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 44454 3678899999999999999998765 45555554 344555544
No 105
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=4.1e-24 Score=207.47 Aligned_cols=239 Identities=20% Similarity=0.335 Sum_probs=195.0
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC
Q 007757 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~ 419 (590)
.|...|.++... +.+|++|++||.+++||.. |+++..+..+. ....+.+...+.....|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488888888887 7799999999999999976 66666665543 3444555544444568999999999999999876
Q ss_pred ce----EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-------------------------CcEEEEeecC
Q 007757 420 EI----TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-------------------------PVVIKYISEP 470 (590)
Q Consensus 420 ~~----~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-------------------------~~~~~~~~~~ 470 (590)
+. +....+|...|-++...+++.+|++||.|.+|.||+... ..++ ....+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~-vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL-VTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-EEecc
Confidence 53 333458999999999999999999999999999999321 1122 22347
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
|..+|.++.|++ ...+++++.|.+|+.||+.++.....+.. ...+.++..+|..++|++|+.|..|++||.++
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec------CcceeEeecccccceeeecCCCCceeecCCCC
Confidence 999999999998 67899999999999999988765543332 34567899999999999999999999999987
Q ss_pred Ce---EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 551 CK---VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 ~~---~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+. ...+|.+|.+-|.++.|+|.+..+|++++.|+++++||
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 53 45778899999999999999899999999999999998
No 106
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=3.7e-24 Score=219.67 Aligned_cols=278 Identities=19% Similarity=0.361 Sum_probs=214.6
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCC-----eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE--c-
Q 007757 310 KYGHLILSAGMDTKVKIWDVVNSG-----KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--F- 381 (590)
Q Consensus 310 ~~g~~L~sgs~Dg~I~iWd~~~~~-----~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~--~- 381 (590)
+..++|+.+..||.|.++|..... ..+.....|...|.++.|.|....|++++.|.++++||+.++.++.. +
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 446899999999999999983211 12355678999999999999777899999999999999999988765 2
Q ss_pred cCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc--------------------e-------EEEEcccCCceeE
Q 007757 382 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--------------------I-------TQEYDQHLGAVNT 434 (590)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~--------------------~-------~~~~~~h~~~V~~ 434 (590)
.+......++|.+.+ ...|++|+.||.|.|||++-.. . +.....+...|.+
T Consensus 142 GH~~SvkS~cf~~~n--~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTN--PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ccccccchhhhccCC--CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 223344566777754 4899999999999999997322 0 1111234444444
Q ss_pred ---EEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEeec-------CC---CCcccEEEEcCCCCEEEEEEcCCeEEEEE
Q 007757 435 ---ITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISE-------PH---MHSMPSISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 435 ---i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~~~~~~~~-------~~---~~~i~~i~~sp~g~~l~s~s~dg~I~iwd 500 (590)
+.+..|...|++++. |+.|+|||++.......... .+ ...+.++.....|.+|++.+.|+.|++|+
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 555567788998887 99999999987654433221 11 34577888888899999999999999999
Q ss_pred ccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEecCCCCEEEEEEcCCCCCEEEE
Q 007757 501 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
+... .+.....+.++.....-..-..+||+.+|++|+.|...++|.+.+... ...+.+|.-.|++++|.|....-++|
T Consensus 300 m~s~-s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 300 MRSL-SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred cccc-CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 9764 334455666666555555677899999999999999999999988654 56677899999999999977778999
Q ss_pred EeCCCcEEEeC
Q 007757 580 CGWDGLIKYWD 590 (590)
Q Consensus 580 ~g~DG~I~iWD 590 (590)
|+.|..++||+
T Consensus 379 cSdD~~~kiW~ 389 (720)
T KOG0321|consen 379 CSDDFRVKIWR 389 (720)
T ss_pred eccCcceEEEe
Confidence 99999999996
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=4.7e-24 Score=211.94 Aligned_cols=254 Identities=19% Similarity=0.328 Sum_probs=201.2
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC---------eeEEEeccCCCceeEEEEec-CCCEEEEEeCCC
Q 007757 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG---------KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDK 365 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~---------~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg 365 (590)
--|.+.|+.+++.|++..++++++..+.|.|||..... .+-..+.+|.+.-.+|+|++ ..-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 46999999999999989999999999999999984322 12236778888777888888 334688888888
Q ss_pred eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC-CCEE
Q 007757 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRF 444 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~-~~~l 444 (590)
.|++||+...... + ..-.....+.+|...|..++|++- ...|
T Consensus 201 ~i~lwdi~~~~~~-----------------------------~--------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 201 TICLWDINAESKE-----------------------------D--------KVVDPKTIFSGHEDVVEDVAWHPLHEDLF 243 (422)
T ss_pred cEEEEeccccccC-----------------------------C--------ccccceEEeecCCcceehhhccccchhhh
Confidence 8888887643211 0 001234557789999999999985 4578
Q ss_pred EEEeCCCcEEEEECCC-CcEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccccCcccccce
Q 007757 445 VTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
+++++|+.+.|||+|+ ..........|...+.|++|+|- +..||+|+.|++|.+||+|+... ++..+.+| ...|
T Consensus 244 ~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H--~dev 319 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGH--EDEV 319 (422)
T ss_pred eeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCC--Ccce
Confidence 8999999999999996 33333444578999999999995 56788999999999999998544 45677777 6779
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEeCCCC--------------eEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 523 CQVNFSPD-GRFVMSGDGEGKCWFWDWKSC--------------KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 523 ~~v~~spd-g~~l~sgs~dg~I~iwd~~t~--------------~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
.+|.|||+ ...|++++.|+.+.+||+..- +++..-.+|...|..+.|+|.+...|+|.+.|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 99999996 567889999999999998642 234455689999999999999999999999999999
Q ss_pred EeC
Q 007757 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
||.
T Consensus 400 IW~ 402 (422)
T KOG0264|consen 400 IWQ 402 (422)
T ss_pred Eee
Confidence 994
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-24 Score=214.26 Aligned_cols=250 Identities=20% Similarity=0.371 Sum_probs=207.9
Q ss_pred CccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC
Q 007757 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 284 ~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~ 363 (590)
|.+.++...+..---.++|.||+-+|. |.+|+.|+..|.|++|.+ .+|.++..+..|-..|+|+.|+-||.+|+|||.
T Consensus 66 w~i~k~~~~~q~~v~Pg~v~al~s~n~-G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 66 WEILKKDQVVQYIVLPGPVHALASSNL-GYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred cccCchhhhhhhcccccceeeeecCCC-ceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 344444444333334678999999999 999999999999999999 799999999999999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC--C
Q 007757 364 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--N 441 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~--~ 441 (590)
||.|.+|.+.. ++....++ +-++...+..|.-+|+++...+. .
T Consensus 144 Dg~V~vW~l~~---------------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~ 188 (476)
T KOG0646|consen 144 DGAVLVWLLTD---------------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTN 188 (476)
T ss_pred CccEEEEEEEe---------------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCcc
Confidence 99999998631 23333332 34567778889999999988764 4
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce-------------eec
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF-------------QLN 508 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~-------------~~~ 508 (590)
.+++++|.|.++++||+..+..+..+. ...++.+++++|.+..+++|+.+|.|.+.++.... ...
T Consensus 189 ~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 189 ARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred ceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 689999999999999999999888885 46689999999999999999999999998875422 112
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCC
Q 007757 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 572 (590)
....+.||.....|+|++++-||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 3455778876678999999999999999999999999999999999998877889999999664
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-23 Score=218.47 Aligned_cols=253 Identities=21% Similarity=0.324 Sum_probs=211.0
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc-CCCceeEEEEecCCCEEEEEeC
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspdg~~l~s~s~ 363 (590)
+....++......+...|+++.|+++ |.+|++|..+|.|.|||+ ...+.++.+.+ |...|-+++|+ +..+.+|+.
T Consensus 203 ~~~s~~v~~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~-~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr 278 (484)
T KOG0305|consen 203 SASSGSVTELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDV-KEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSR 278 (484)
T ss_pred ecCCCceEEeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEeh-hhccccccccCCcCceeEEEecc--CceEEEecC
Confidence 33444445555555899999999999 999999999999999999 67788888888 99999999998 678999999
Q ss_pred CCeEEEEECCCCcEEEEccCCCCce--EEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC-
Q 007757 364 DKNIKYWDTETGQVIRTFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS- 440 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~- 440 (590)
|+.|..+|++..+.......+|... .+.|+++. .++++|+.|+.+.|||....++...+..|..+|..++|+|-
T Consensus 279 ~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~---~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG---NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred CCcEEEEEEecchhhhhhhhcccceeeeeEECCCC---CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc
Confidence 9999999999887665533344444 44555543 78999999999999999988999999999999999999995
Q ss_pred CCEEEEE--eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEE--EcCCeEEEEEccCceeecccccccCc
Q 007757 441 NRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGH 516 (590)
Q Consensus 441 ~~~l~s~--s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~ 516 (590)
...||+| +.|+.|++||..++..+..+ .....|.+|.|++..+-|+++ ..++.|.||+..+. .....+.+|
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~v--dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH 430 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSV--DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGH 430 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEeccc--ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCC
Confidence 4567776 46999999999999988887 367789999999998777764 45688999999873 444667788
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 517 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
...|..+++||||..|++|+.|.+++||++-..
T Consensus 431 --~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 431 --TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 456999999999999999999999999998664
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=220.58 Aligned_cols=263 Identities=17% Similarity=0.316 Sum_probs=212.2
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 376 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~ 376 (590)
+|+.+-+.|+|.|+ |.+|++|+.||.|++|+.........++.-+...|.+++.. +++|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 79999999999999 88999999999999999844424444444477788877764 5599999999999999998775
Q ss_pred E---EEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcE
Q 007757 377 V---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSL 453 (590)
Q Consensus 377 ~---~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I 453 (590)
. +.+|. -+..++++.-++ .++++|+.|-.|++.++........+.+|.++|.++.|+|.+++|++.+.||.|
T Consensus 88 ~~~iL~Rft--lp~r~~~v~g~g---~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 88 EDTILARFT--LPIRDLAVSGSG---KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred ccceeeeee--ccceEEEEecCC---cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence 4 33433 344566666543 689999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeecC-------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEE
Q 007757 454 RVWEFGIPVVIKYISEP-------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~-------~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
++||+..+.....+... ....+..++|+|++..|++.+.|+.|.+|+..+......+ ........++.++
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L---r~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL---RDKLSSSKFSDLQ 239 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee---cccccccceEEEE
Confidence 99999987766655321 1345677999999999999999999999999887655333 2333344488899
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCC
Q 007757 527 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
|+|+|.|||+++.+|.|.|||+.+... ......|++++|.|+.+
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC
Confidence 999999999999999999999998222 12235799999999544
No 111
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.4e-24 Score=226.66 Aligned_cols=254 Identities=16% Similarity=0.325 Sum_probs=211.8
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCC----------------------------cc-----------ccCC
Q 007757 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPK----------------------------DA-----------KAAN 282 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~----------------------------~~-----------~~~~ 282 (590)
.+.|.++..++....-|+++++.|..+|+|..... .. +...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 56788899999999999999999999999965440 00 0001
Q ss_pred CCc--------cCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEec-
Q 007757 283 DHC--------YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN- 353 (590)
Q Consensus 283 ~~~--------~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp- 353 (590)
..| .+..++++.|.||.+.|..|.|+.+ ++|+++|+|.+|+||++ ....|+++|. |..-|+||+|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~-~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHP-GRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecC-CCcceeeEEe-cCCeeEEEEeccc
Confidence 122 1335688999999999999999987 79999999999999999 5788998885 999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc--c---
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--H--- 428 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~--h--- 428 (590)
|.++|++|+-||.|+||++...+++.-......+..+++.|++ ...++|+.+|.+++|++...++.....- |
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG---k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG---KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC---ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 8899999999999999999999999888888999999999975 6799999999999999998877665421 1
Q ss_pred ---CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 429 ---LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 429 ---~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
...|+.+.|.|... .+++++.|..|+|||++....+..+...+ ...-....|+.+|++|++++.|..|++|+..
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 22799999997543 68888999999999998777776665433 3345677899999999999999999999974
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=3.4e-24 Score=214.88 Aligned_cols=252 Identities=19% Similarity=0.267 Sum_probs=193.1
Q ss_pred eEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE----EEEcc--CCCCceEEEEecCCCCCcEEEEEEcC
Q 007757 335 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV----IRTFS--TGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 335 ~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~----~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
.-..+.+|+..|.++++.|.|..|++|+.|-+|++||+..... .+.+. ..+.+.++.+++.+ ..|++.+..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg---~~iLvvsg~ 235 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG---DQILVVSGS 235 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC---CeEEEEecC
Confidence 3446788999999999999999999999999999999975432 22222 24566777887754 467777778
Q ss_pred CcEEEEECCCCceEEE------------EcccCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEE-ee----cC
Q 007757 409 KKIVQWDMNTKEITQE------------YDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKY-IS----EP 470 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~------------~~~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~-~~----~~ 470 (590)
...+++|-...+.+.. -++|...++|.+|+|..+ .|++++.||+++|||+...+.... +. .+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 8899999654443332 257999999999999764 799999999999999976543222 21 23
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
..-+++.++|++++++||+|+.||.|.+|+............-..|.....|++|.||+||++|++-+.|+++++||++.
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 44578999999999999999999999999987655444445556676666899999999999999999999999999987
Q ss_pred C-eEEEEEecCC--CCEEEEEEcCCCCCEEEEEeC------CCcEEEeC
Q 007757 551 C-KVFRTLKCHE--GVCIGCEWHPLEQSKVATCGW------DGLIKYWD 590 (590)
Q Consensus 551 ~-~~~~~l~~h~--~~V~~v~~sp~~~~~l~s~g~------DG~I~iWD 590 (590)
. +++....+-. -+-+.|+|+| +..+|+||.. -|++.+||
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred cccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEe
Confidence 5 4555554432 3457899999 6778888865 35566664
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.9e-23 Score=207.57 Aligned_cols=243 Identities=19% Similarity=0.394 Sum_probs=197.8
Q ss_pred cCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 286 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 286 ~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
+.|.+.-+ ++|.+.|.+++.+++ +++|++|+.|..|.||+. .+.+.+..+.+|.+.|.+++|-.....|++++.|+
T Consensus 191 ~~~~k~~r--~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~-~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 191 GNPLKESR--KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDC-DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred cCCCCccc--ccccceeEEEEEcCC-CcEEEecCCCceEEEecC-cccchhhcccccccceeeeeeecCccceeeeecCC
Confidence 44444443 599999999999999 999999999999999999 78899999999999999999999888999999999
Q ss_pred eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEE
Q 007757 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
.|++|+++....+.++-. |...+..+.... .+..+.+|+.|+++++|++. .+....+.+|.+.+-|++|..+ ..|+
T Consensus 267 svkvw~~~~~s~vetlyG-Hqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~Hfv 342 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYG-HQDGVLGIDALS-RERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFV 342 (479)
T ss_pred ceEEEehhHhHHHHHHhC-Cccceeeechhc-ccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-ccee
Confidence 999999998777766643 333344444433 34678888899999999994 3344567789999999999954 5899
Q ss_pred EEeCCCcEEEEECCCCcEEEEeecCCC-----------CcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccccc
Q 007757 446 TSSDDKSLRVWEFGIPVVIKYISEPHM-----------HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~~~~~~~~~~~~-----------~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
+||++|.|.+|++-..+++.....+|. ..|++++..|...++++|+.+|.|++|-+..+.+. +..+.
T Consensus 343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~--i~~l~ 420 (479)
T KOG0299|consen 343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA--INLLY 420 (479)
T ss_pred eccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc--cceee
Confidence 999999999999988887766654432 26889999999999999999999999999877432 22233
Q ss_pred CcccccceEEEEEcCCCCEEEEEe
Q 007757 515 GHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
.....+.|+.++|+++|++|++|.
T Consensus 421 ~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 421 SLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ecccccEEEEEEEccCCCEEEEec
Confidence 333568899999999999877764
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-22 Score=183.05 Aligned_cols=292 Identities=18% Similarity=0.260 Sum_probs=217.2
Q ss_pred cccCCcceeecccccccccceeecCC-CccccCCC-CccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 007757 250 EHVEDKSTFHGKEETDYQGRSWIAPP-KDAKAAND-HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW 327 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~-~~~~~~~~-~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iW 327 (590)
..+++..-+.+.++.-..-|..--|. .+++..-+ ..+.|.-+.+.-+.|.+.|.|.+|+|. |.+|++|+.|.+|++.
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatgsndk~ik~l 116 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGSNDKTIKVL 116 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEecCCCceEEEE
Confidence 34555544444444444445432211 11122222 233445555666789999999999999 9999999999999998
Q ss_pred EccCCCee-----EEEeccCCCceeEEEEec----CCCEEEEEeC-CCeEEEEECCCCcEEEEccCCCCceEEEEecCCC
Q 007757 328 DVVNSGKC-----MRTYMGHSKAVRDISFCN----DGTKFLTASY-DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 397 (590)
Q Consensus 328 d~~~~~~~-----~~~~~~h~~~V~~l~fsp----dg~~l~s~s~-Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
-+. ...+ -..+.-|.+.|++++|-. .|..|++++. |..|.+-|..+|+....+..+.........+++
T Consensus 117 ~fn-~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~- 194 (350)
T KOG0641|consen 117 PFN-ADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNG- 194 (350)
T ss_pred ecc-cccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecC-
Confidence 762 2222 234667999999999975 3557777654 678888899999998888654433333344433
Q ss_pred CCcEEEEEEcCCcEEEEECCCCceEEEEcc-------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC
Q 007757 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~-------h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~ 470 (590)
-+|++|+.|.+|++||++-..++.++.. ..+.|.+++..|.|+.|++|-.|.+..+||++.+..++.+. +
T Consensus 195 --~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-p 271 (350)
T KOG0641|consen 195 --AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-P 271 (350)
T ss_pred --cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-C
Confidence 6899999999999999999888887642 23679999999999999999999999999999999998885 6
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceee-cccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
|...|.++.|+|...|+++++.|..|++-|+.....- ........| ...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 272 hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 272 HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999999999999999999998653211 111222333 4556779999999889999999999999753
No 115
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=8.1e-23 Score=222.11 Aligned_cols=290 Identities=17% Similarity=0.263 Sum_probs=225.4
Q ss_pred ccCCcceeecccc--cccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 007757 251 HVEDKSTFHGKEE--TDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 251 ~~~~~s~~~~~~~--~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd 328 (590)
..++...-.++++ .|...|.|-..+-.... .+++..-++.+.+...|.+.|+|++|+|+ |.+||+||.|+.|.||.
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~-~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~ 97 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK-EEKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWE 97 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchh-hhhhcccchhheeeccccCceeEEEECCC-CCeEeeccCcceEEEee
Confidence 3444444456666 88888999776654322 12233345667788899999999999999 99999999999999999
Q ss_pred ccC-----------------CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC-ceEE
Q 007757 329 VVN-----------------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVV 390 (590)
Q Consensus 329 ~~~-----------------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~~~~ 390 (590)
... ..+++..+.+|...|.+++|+|++.+|++++.|++|.||+..+.+.+..+..+.. +.-+
T Consensus 98 ~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGv 177 (942)
T KOG0973|consen 98 RAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGV 177 (942)
T ss_pred ecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccce
Confidence 741 1247788999999999999999999999999999999999999988888765433 3455
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC------ceeEEEEeCCCCEEEEEe----CCCcEEEEECCC
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG------AVNTITFVDSNRRFVTSS----DDKSLRVWEFGI 460 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~------~V~~i~~~p~~~~l~s~s----~Dg~I~iwdl~~ 460 (590)
.|.|.+ .+|++-+.|++|++|++.+..+...+..+.. .+..+.|+|+|.+|++.- .-.++.|.+-.+
T Consensus 178 s~DP~G---ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 178 SWDPIG---KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred EECCcc---CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 666544 7999999999999999887767666655433 467899999999999863 234677777655
Q ss_pred CcEEEEeecCCCCcccEEEEcCC-------------CC----EEEEEEcCCeEEEEEccCceeecccccccCcccccceE
Q 007757 461 PVVIKYISEPHMHSMPSISLHPN-------------TN----WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 461 ~~~~~~~~~~~~~~i~~i~~sp~-------------g~----~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
-..-..+. +|..++.++.|+|. .. .+|+|+.|+.|.||......++.....+. ...|.
T Consensus 255 Wk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf----~~SI~ 329 (942)
T KOG0973|consen 255 WKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF----NKSIV 329 (942)
T ss_pred ceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh----cCcee
Confidence 55444443 68889999999982 11 68899999999999986655554443333 45688
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 524 QVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
.++|+|||..|++++.||+|.++.+..
T Consensus 330 DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 330 DMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 999999999999999999999998765
No 116
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=6.2e-24 Score=201.88 Aligned_cols=289 Identities=16% Similarity=0.306 Sum_probs=230.7
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007757 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg 322 (590)
.+.-.+...+.+...|+.+++.|.-...|......++.. +..+..-.|--|..+|.|+.|+.+ ..+|++|+.||
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD-----LkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDG 285 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD-----LKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDG 285 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhh-----hhhhhhcceeecccceEEEeeccc-HHHhhccCcCC
Confidence 333445566889999999999999888886654433211 111222344568899999999999 89999999999
Q ss_pred cEEEEEccCCCeeEEEec-cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc-eEEEEecCCCCCc
Q 007757 323 KVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQN 400 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~ 400 (590)
.|+||.+ .++.|++.|. .|+..|+|+.|+.|+..+++++.|.+++|.-+.+|++++.|..+... .-..|.++ ++
T Consensus 286 kIKvWri-~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d---G~ 361 (508)
T KOG0275|consen 286 KIKVWRI-ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD---GH 361 (508)
T ss_pred cEEEEEE-ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC---CC
Confidence 9999999 7999999987 89999999999999999999999999999999999999999765432 33444443 47
Q ss_pred EEEEEEcCCcEEEEECCCCceEEEEcc--cCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEeecC--CCCcc
Q 007757 401 ILLAGMSDKKIVQWDMNTKEITQEYDQ--HLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEP--HMHSM 475 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t~~~~~~~~~--h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~--~~~~i 475 (590)
.++++++||+|++|+..+.+++.+++. ...+|+++...|.+ ..+++|...++|+|.++. ++.++.+..+ ..+..
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 899999999999999999999998864 34578888887754 578999999999999985 4555665543 34456
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 476 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 476 ~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
.+++++|.|.++.+.+.|+.+++|...++....... -| ...+..++-+|..++|++-+.||.+++|.
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~---Vh--EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP---VH--EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee---cc--cccccccccCcccchhhhhcccchhhhcC
Confidence 778899999999999999999999988775443222 22 34466789999999999999999999994
No 117
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5e-23 Score=209.85 Aligned_cols=292 Identities=21% Similarity=0.344 Sum_probs=223.5
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCC-EEEEEeC
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASY 363 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~ 363 (590)
.-+|.++-..++||++.|.||...|. |.+|++|+.||+|+||.+ .++.|++++. ..+.|.||+|+|.+. .++.++.
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi-~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEI-ATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEe-ecceEEEEEe-ecceeEEEEecCCCCceeEEEEe
Confidence 34677888899999999999999998 999999999999999999 7999999886 455899999999654 2333334
Q ss_pred CCeEEEEECCCCc--------------------------------------EEEEccCCCCceEEEEecCCCCCcEEEEE
Q 007757 364 DKNIKYWDTETGQ--------------------------------------VIRTFSTGKIPYVVKLNPDDDKQNILLAG 405 (590)
Q Consensus 364 Dg~I~vWd~~t~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~lvsg 405 (590)
..++.|-+..-|. +...+.....+..+.|+.. +.+|++.
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk---GDYlatV 539 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK---GDYLATV 539 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC---CceEEEe
Confidence 4445555433221 0112223333444445443 3577776
Q ss_pred Ec---CCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC
Q 007757 406 MS---DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 406 ~~---dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp 482 (590)
+. ...|.|+++.......-|....+.|.++.|+|...+|++++. ..|+|||+.....++.+.. ....|..+++||
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-g~kwiS~msihp 617 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-GSKWISSMSIHP 617 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-CCeeeeeeeecC
Confidence 55 357889999877666666667789999999999999888875 6799999988776666543 556789999999
Q ss_pred CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC------CC---CeE
Q 007757 483 NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW------KS---CKV 553 (590)
Q Consensus 483 ~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~------~t---~~~ 553 (590)
.|..|++++.|+.+..||+.-... ..+.+.-| ...+..|+|++.-.++++|+.||.+.|+.- -. --+
T Consensus 618 ~GDnli~gs~d~k~~WfDldlssk--Pyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSK--PYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP 693 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcc--hhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence 999999999999999999875432 23445555 455778999999999999999999999842 11 234
Q ss_pred EEEEecCCCC----EEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 554 FRTLKCHEGV----CIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 554 ~~~l~~h~~~----V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+..+++|... |..+.||| ...+|+++|.||+|++|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 6778888765 89999999 67799999999999999
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=192.02 Aligned_cols=238 Identities=20% Similarity=0.304 Sum_probs=186.4
Q ss_pred cCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCC-CcEEEEccC--CCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC
Q 007757 341 GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET-GQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 341 ~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl 416 (590)
.....|.+|+||| ...+|+.+|.||+||+|+++. |..+..... ..++.+++|+.++ ..+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg---skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG---SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC---ceEEeeccCCceEEEEc
Confidence 4567899999999 556777999999999999986 455444333 4445555555443 67999999999999999
Q ss_pred CCCceEEEEcccCCceeEEEEeCCCC--EEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC
Q 007757 417 NTKEITQEYDQHLGAVNTITFVDSNR--RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 417 ~t~~~~~~~~~h~~~V~~i~~~p~~~--~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 494 (590)
.+++ +..+..|.++|.++.|.+... .|++||.|++|++||.+...++..+..+. .+.++.+ -..+++++..+.
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv--~~pm~vVata~r 176 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADV--LYPMAVVATAER 176 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eeeehhc--cCceeEEEecCC
Confidence 9995 556678999999999998766 79999999999999999999888876543 3344333 356788999999
Q ss_pred eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEecCCC---------C
Q 007757 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--KVFRTLKCHEG---------V 563 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~--~~~~~l~~h~~---------~ 563 (590)
.|.+|++++.... ++..... ..-.+.+|+..+|....+.|+-+|++.|..+..+ +.-.+|++|.. .
T Consensus 177 ~i~vynL~n~~te--~k~~~Sp-Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 177 HIAVYNLENPPTE--FKRIESP-LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cEEEEEcCCCcch--hhhhcCc-ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 9999999765333 2222222 3455778888888888899999999999999876 55567778863 4
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 564 CIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 564 V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|.+|+|+| -...|+|+|.||++.+||
T Consensus 254 VNsi~FhP-~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 254 VNSIAFHP-VHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ecceEeec-ccceEEEecCCceEEEec
Confidence 78899999 556899999999999998
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.5e-22 Score=190.78 Aligned_cols=236 Identities=19% Similarity=0.323 Sum_probs=194.8
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~ 421 (590)
....|++|.|+|.+..|+.+++||++++||+........+...++...++|... ..+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC----ceEEEeccCceEEEEEecCCcc
Confidence 357899999999999999999999999999999988888888888888888764 4599999999999999998865
Q ss_pred EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
. .+..|..+|.||.+++....+++||.|++|++||.+.......+.. ...|.++.. .++.|++|+.+..|.+||+
T Consensus 88 ~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~--~kkVy~~~v--~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 88 D-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ--GKKVYCMDV--SGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred e-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc--CceEEEEec--cCCEEEEeecCceEEEEEc
Confidence 4 4457999999999999889999999999999999998655555533 336666665 5789999999999999999
Q ss_pred cCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEecCCC---------CEEEEE
Q 007757 502 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEG---------VCIGCE 568 (590)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~----~~~~~l~~h~~---------~V~~v~ 568 (590)
++....... ......-.+.++++-|++.=.++++-+|+|.+=.+... +....|++|.. +|.+++
T Consensus 163 Rn~~~~~q~---reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 163 RNLDEPFQR---RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred ccccchhhh---ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 986544311 12223456788999998888999999999998776655 45567777753 799999
Q ss_pred EcCCCCCEEEEEeCCCcEEEeC
Q 007757 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~DG~I~iWD 590 (590)
||| -...|+|||.||.|.+||
T Consensus 240 Fhp-~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 240 FHP-IHGTFATGGSDGIVNIWD 260 (323)
T ss_pred ecc-ccceEEecCCCceEEEcc
Confidence 999 466899999999999998
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=6.5e-21 Score=193.20 Aligned_cols=267 Identities=17% Similarity=0.205 Sum_probs=198.5
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEE-eCCCeE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNI 367 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L-~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I 367 (590)
+++.++.+|.. +.+++|+|+ +..+ ++++.++.|++||+ ..++.+..+..+.. +..++|+|+++.++++ +.++.|
T Consensus 22 ~~~~~~~~~~~-~~~l~~~~d-g~~l~~~~~~~~~v~~~d~-~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 22 EVTRTFPVGQR-PRGITLSKD-GKLLYVCASDSDTIQVIDL-ATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred ceEEEEECCCC-CCceEECCC-CCEEEEEECCCCeEEEEEC-CCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence 45667776654 678999999 6655 67788999999999 56677666665443 5788999999877655 568999
Q ss_pred EEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC-cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEE
Q 007757 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s 446 (590)
++||+.+++.+..+..+..+..+.+.+++ .+++++..++ .+.+||..+++....+.. ...+.++.|++++++|++
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg---~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEPEGMAVSPDG---KIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWV 173 (300)
T ss_pred EEEECCCCeEEeEeeCCCCcceEEECCCC---CEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEE
Confidence 99999999888887766566677777754 4677776654 577789998877665432 335678999999998865
Q ss_pred E-eCCCcEEEEECCCCcEEEEeecC------CCCcccEEEEcCCCCEEEEE-EcCCeEEEEEccCceeecccccccCccc
Q 007757 447 S-SDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 447 ~-s~Dg~I~iwdl~~~~~~~~~~~~------~~~~i~~i~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
+ ..++.|++||+.+...+..+... .......++|+|++++++++ +.++.|.+||+.+........ .
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~---- 247 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--V---- 247 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--e----
Confidence 5 46899999999988776655321 11123468899999986554 456789999997754432211 1
Q ss_pred ccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcC
Q 007757 519 AGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
...+.+++|+|+|++|++++ .+|.|.+||+.+++++..++.. ....+++++|
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 23466899999999998864 6899999999999999999865 4558888875
No 121
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=1e-22 Score=192.85 Aligned_cols=294 Identities=15% Similarity=0.272 Sum_probs=222.7
Q ss_pred CCCCcccCCcceeecccccccccceeecCCC----ccccC-CCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007757 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPK----DAKAA-NDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~----~~~~~-~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~ 320 (590)
.-....+.....|.++++.|.++++.-.+.- ..+.. .........++++|-.|...|+++.|+|. ..+|++|+.
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~ILiS~sr 192 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ETILISGSR 192 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-hheEEeccC
Confidence 3344567788888899999999887633211 11111 11111223588999999999999999999 899999999
Q ss_pred CCcEEEEEccCCC--eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC--CCC--ceEEEEec
Q 007757 321 DTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKI--PYVVKLNP 394 (590)
Q Consensus 321 Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~--~~~--~~~~~~~~ 394 (590)
|++|++||+.... +..+.+ ....+|++|.|+|.|.+|+.|.....+++||+++-++...-.. .+. +.++..++
T Consensus 193 D~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred CCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence 9999999994322 111222 3456899999999999999999999999999999998765543 222 33344443
Q ss_pred CCCCCcEEEEEEcCCcEEEEECCCCceEEEEc-ccC-CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCC
Q 007757 395 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHL-GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 472 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~-~h~-~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~ 472 (590)
.+++.++|+.||.|++||--+++++.++. .|. ..|.+..|..+++++++.+.|..+++|.+.++.++........
T Consensus 272 ---t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~ 348 (430)
T KOG0640|consen 272 ---TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT 348 (430)
T ss_pred ---CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCc
Confidence 45899999999999999999999988874 455 4789999999999999999999999999999999887754311
Q ss_pred ----CcccEEEEcCCCCEEEEEEc-CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 473 ----HSMPSISLHPNTNWLAAQSL-DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 473 ----~~i~~i~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
.--+...|+....|++.-.. .+.+..||.++..+.... ..+| .+.+..+.-||.+.-+++|+.|-++++|-
T Consensus 349 tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~--slgH--n~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 349 TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL--SLGH--NGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred ccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc--ccCC--CCCceEEEeCCCCCceeeecccceeeeee
Confidence 11234556667777776543 477999999987655332 3355 57788899999999999999999999996
Q ss_pred C
Q 007757 548 W 548 (590)
Q Consensus 548 ~ 548 (590)
-
T Consensus 425 r 425 (430)
T KOG0640|consen 425 R 425 (430)
T ss_pred e
Confidence 4
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-21 Score=206.90 Aligned_cols=286 Identities=17% Similarity=0.311 Sum_probs=232.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
.+.|++|.--+..-+-++.|+..|.++||++ .+++.+.+++++...|+++.=+|-=..++.|..+|+|.+++++.++.+
T Consensus 159 ~~~Ital~HP~TYLNKIvvGs~~G~lql~Nv-rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 159 GDFITALLHPSTYLNKIVVGSSQGRLQLWNV-RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL 237 (910)
T ss_pred CCceeeEecchhheeeEEEeecCCcEEEEEe-ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence 3348888543344467899999999999999 799999999999999999999997779999999999999999999999
Q ss_pred EEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc-ccCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007757 379 RTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 379 ~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
.+|+.. ..+..++|..++ ..++++|+..|.+.+||++..+++..+. .|.+.|+.+.|.+....+++++.|+++++|
T Consensus 238 ~sFk~d~g~VtslSFrtDG--~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDG--NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEccccceeEEEeccCC--CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 999986 666667776654 4789999999999999999888776654 788999999999988899999999888887
Q ss_pred ECCCC-----------------cEEEEe----------------------------------------------------
Q 007757 457 EFGIP-----------------VVIKYI---------------------------------------------------- 467 (590)
Q Consensus 457 dl~~~-----------------~~~~~~---------------------------------------------------- 467 (590)
=.+++ .+++..
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 44310 000000
Q ss_pred ------------------------------------------ecC------CCCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007757 468 ------------------------------------------SEP------HMHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 468 ------------------------------------------~~~------~~~~i~~i~~sp~g~~l~s~s~dg~I~iw 499 (590)
... ....+++++.++.|++.+.|+..|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 000 11357788999999999999999999999
Q ss_pred EccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---------------------------
Q 007757 500 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--------------------------- 552 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~--------------------------- 552 (590)
++.++.....+..-..| .+.|+.++...-++.+++++.+|.+.+||.+...
T Consensus 476 NmQSGi~r~sf~~~~ah--~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAH--KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EcccCeeecccccCccc--cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 99987655444322344 6788999998889999999999999999976543
Q ss_pred --------------EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 553 --------------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 553 --------------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.++.|.+|.+.|++++||| ++++|++++.|++|++||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWD 604 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEe
Confidence 2233567999999999999 788999999999999998
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=7.3e-22 Score=204.65 Aligned_cols=293 Identities=22% Similarity=0.391 Sum_probs=222.6
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCC--CEEEEEeCCCcEEEEEccCCC--------------------eeE---------
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYG--HLILSAGMDTKVKIWDVVNSG--------------------KCM--------- 336 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g--~~L~sgs~Dg~I~iWd~~~~~--------------------~~~--------- 336 (590)
..+.+..+.||...|.+|+|...++ -+|+|+|.|..|+||.+...+ ...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 4467889999999999999998744 378899999999999884222 111
Q ss_pred -EEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC--cEEEEccCCC----C--ceEEEEecCCCCCcEEEEEEc
Q 007757 337 -RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTGK----I--PYVVKLNPDDDKQNILLAGMS 407 (590)
Q Consensus 337 -~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--~~~~~~~~~~----~--~~~~~~~~~~~~~~~lvsg~~ 407 (590)
..+.||...|.++.|+|.+..|+++|.|.++.+|...+. --+.....+. . -+...|+++. +.+++-+.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~---~~ii~~g~ 336 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS---NVIIAHGR 336 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC---CEEEEecc
Confidence 123499999999999999999999999999999977654 3333332221 2 2344455543 78999999
Q ss_pred CCcEEEEECCCC---ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECC----------CC-------------
Q 007757 408 DKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG----------IP------------- 461 (590)
Q Consensus 408 dg~I~vwDl~t~---~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~----------~~------------- 461 (590)
.|..++|-.... .....+.+|...|..+.|.|.|.+|++.|.|.+-|+|--- .+
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 999999984332 2334467899999999999999999999998887776321 00
Q ss_pred ------------cEEEEe--------------------------------------------------------------
Q 007757 462 ------------VVIKYI-------------------------------------------------------------- 467 (590)
Q Consensus 462 ------------~~~~~~-------------------------------------------------------------- 467 (590)
+.++.+
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 000000
Q ss_pred ------------------------ecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEccCceeecccccccCccc
Q 007757 468 ------------------------SEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 468 ------------------------~~~~~~~i~~i~~sp~g~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
.-+|...|.+++.+|+++++|+++.. ..|++|+..+-... ..+.+|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---~~L~~H-- 571 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---QELEGH-- 571 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---heeccc--
Confidence 01355678899999999999999865 45899998765433 356777
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~----~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.-.|+.++|||||+||++.+.|.++.+|...... .....+.|...|.++.|+| +..+++|+|.|.+|+||
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVW 645 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEE
Confidence 5669999999999999999999999999874322 2444788999999999999 66789999999999999
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.9e-23 Score=213.77 Aligned_cols=292 Identities=17% Similarity=0.363 Sum_probs=218.7
Q ss_pred ccCCccee-EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe---eEEEeccC---CCceeEEEEec-CCC
Q 007757 285 CYIPKRLV-HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMGH---SKAVRDISFCN-DGT 356 (590)
Q Consensus 285 ~~~p~~~v-~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~h---~~~V~~l~fsp-dg~ 356 (590)
.|+|.+-. ..+++| ..+|...++ -..|+.++. ..++|+.+..... +...+... .-.+.+|.|+. +.+
T Consensus 27 s~l~~~~~~~~~k~~---~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N 101 (839)
T KOG0269|consen 27 SYLPYDKMNCKLKAK---ANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN 101 (839)
T ss_pred ccccchheeeecccc---cceEeecCC-cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh
Confidence 45554422 224444 455666677 555666654 4678887743322 22222211 22456788886 678
Q ss_pred EEEEEeCCCeEEEEECCC---CcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCce
Q 007757 357 KFLTASYDKNIKYWDTET---GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 432 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t---~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V 432 (590)
+|++++..|.|.+||+.. .+.+..|.. ......+.|++.. .++|++|+.||.|++||++...-..++.+....|
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~te--p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESi 179 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTE--PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESI 179 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCC--ccEEEecCCCceEEEEeeecccccccccccchhh
Confidence 999999999999999987 444444533 3345566666654 4899999999999999999999999998889999
Q ss_pred eEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 433 NTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 433 ~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
..+.|+|. +..|+++.+.|.|.+||++.+.........|.++|.|+.|+|++.+||+|+.|+.|+||+..+.... ...
T Consensus 180 RDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-~~~ 258 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-PKH 258 (839)
T ss_pred hceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-cee
Confidence 99999984 6789999999999999999887665555689999999999999999999999999999999764322 111
Q ss_pred cccCcccccceEEEEEcCCCCE-EEEEe--CCCcEEEEeCCCC-eEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 512 RFAGHIVAGYACQVNFSPDGRF-VMSGD--GEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~-l~sgs--~dg~I~iwd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
.. .....+.+|.|-|.-++ |++++ .|-.|+|||++.. -+..++..|...++.++|-..+...|.+|+.||+|.
T Consensus 259 tI---nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 259 TI---NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred EE---eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 11 12356788999998766 55544 5778999999754 567889999999999999876778999999999874
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6e-22 Score=197.29 Aligned_cols=260 Identities=17% Similarity=0.265 Sum_probs=201.0
Q ss_pred EeCC-CcEEEEEccCCCeeEEEeccCCC-ceeEEEEecCCCEEEEEeCC-CeEEEEECCCCcEEE-EccCCCCceEEEEe
Q 007757 318 AGMD-TKVKIWDVVNSGKCMRTYMGHSK-AVRDISFCNDGTKFLTASYD-KNIKYWDTETGQVIR-TFSTGKIPYVVKLN 393 (590)
Q Consensus 318 gs~D-g~I~iWd~~~~~~~~~~~~~h~~-~V~~l~fspdg~~l~s~s~D-g~I~vWd~~t~~~~~-~~~~~~~~~~~~~~ 393 (590)
++.| ..+.+||+ .++....++++... .-.++..- .+.+++++... ..|.+|.+....... .+..+....++...
T Consensus 13 sS~d~~~~~~~dl-~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDL-RTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEec-CCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 3444 45999999 68888888876521 11111111 33567776543 579999987654433 44445555555555
Q ss_pred cCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECC---------CCcEE
Q 007757 394 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG---------IPVVI 464 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~---------~~~~~ 464 (590)
+. +.++++|+-.|.|++|.+.+|.++..+.+|-..|+|+.|+.|+.+|++||.||.|.+|.+. +..++
T Consensus 91 n~---G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 91 NL---GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred CC---ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 54 4788888899999999999999999999999999999999999999999999999999873 23444
Q ss_pred EEeecCCCCcccEEEEcCC--CCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCc
Q 007757 465 KYISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 542 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~--g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~ 542 (590)
..+. .|.-+|+.+.+.+. ..+|++++.|.++++||+..+..+.... ....+.+++++|-++.+++|+.+|.
T Consensus 168 ~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 168 HIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------FPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred eeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------cCCcceeEEEcccccEEEecCCcce
Confidence 4443 58889999988765 4689999999999999998876553322 1356778999999999999999999
Q ss_pred EEEEeCCCC----------------eEEEEEecCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 543 CWFWDWKSC----------------KVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 543 I~iwd~~t~----------------~~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|.+.++... ..+..+.+|.+ .|+|++.+- ++.+|++|+.||.|+|||
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEe
Confidence 999887432 24566788988 999999999 788999999999999998
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.2e-21 Score=180.14 Aligned_cols=254 Identities=19% Similarity=0.375 Sum_probs=193.3
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC---CCeeEEEeccCCCceeEEEEec--CCCEEEEEeCCCeEEEE
Q 007757 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYW 370 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~---~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vW 370 (590)
.+|..-|.|+.|.+. |+.+++|+.|++|+|||... +..+....+.|.+.|..|.|.+ -|+.+++|++|+++.||
T Consensus 10 s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 489999999999998 99999999999999999622 2256667889999999999977 68999999999999999
Q ss_pred ECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC--CCEEEEEe
Q 007757 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--NRRFVTSS 448 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~--~~~l~s~s 448 (590)
.-.. ..+..+. +-|- ...++....+.|+.|+|.|. |-.|++++
T Consensus 89 EE~~----~~~~~~~--------------------------~~Wv-----~~ttl~DsrssV~DV~FaP~hlGLklA~~~ 133 (361)
T KOG2445|consen 89 EEQE----KSEEAHG--------------------------RRWV-----RRTTLVDSRSSVTDVKFAPKHLGLKLAAAS 133 (361)
T ss_pred eecc----ccccccc--------------------------ceeE-----EEEEeecCCcceeEEEecchhcceEEEEec
Confidence 7431 1111000 1111 22344556778999999985 66899999
Q ss_pred CCCcEEEEECCCCcEEEEeec------------CCCCcccEEEEcCC---CCEEEEEEcC-----CeEEEEEccCce-ee
Q 007757 449 DDKSLRVWEFGIPVVIKYISE------------PHMHSMPSISLHPN---TNWLAAQSLD-----NQILIYSTRERF-QL 507 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~------------~~~~~i~~i~~sp~---g~~l~s~s~d-----g~I~iwd~~~~~-~~ 507 (590)
.||.||||+.-.+..+..... .+..+..|+.|+|. ..+|++|+.+ +.+.||...... ..
T Consensus 134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw 213 (361)
T KOG2445|consen 134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW 213 (361)
T ss_pred cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee
Confidence 999999999765443333211 23445678889875 4678888766 578899765543 45
Q ss_pred cccccccCcccccceEEEEEcCC----CCEEEEEeCCCcEEEEeCCCC--------------------eEEEEEecCCCC
Q 007757 508 NKKKRFAGHIVAGYACQVNFSPD----GRFVMSGDGEGKCWFWDWKSC--------------------KVFRTLKCHEGV 563 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spd----g~~l~sgs~dg~I~iwd~~t~--------------------~~~~~l~~h~~~ 563 (590)
.....+.+| ...|..++|.|+ -.+|++++.|| |+||.++.. +.+..+..|.+.
T Consensus 214 ~kva~L~d~--~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 214 LKVAELPDH--TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred eeehhcCCC--CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 555566666 678999999995 35789999999 999998731 245567789999
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 564 CIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 564 V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
|..+.|+- .+..|++.|.||+||+|
T Consensus 291 VWrv~wNm-tGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 291 VWRVRWNM-TGTILSSTGDDGCVRLW 315 (361)
T ss_pred eEEEEEee-eeeEEeecCCCceeeeh
Confidence 99999998 77899999999999999
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=194.57 Aligned_cols=286 Identities=15% Similarity=0.238 Sum_probs=230.2
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCC-EEEEEeCCCc
Q 007757 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTK 323 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~-~L~sgs~Dg~ 323 (590)
+++....++++.+++.+++.|...|+|-...+. ...++.+.--..+|.+.+|.|+ |+ .+++++....
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-----------N~~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~rrky 281 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-----------NPKLQSIHLEKFPIQKAEFAPN-GHSVIFTSGRRKY 281 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCcc-----------ChhheeeeeccCccceeeecCC-CceEEEecccceE
Confidence 556667899999999999999999999665542 2356677777889999999999 65 9999999999
Q ss_pred EEEEEccCCCeeE--EEeccCC-CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCc
Q 007757 324 VKIWDVVNSGKCM--RTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 400 (590)
Q Consensus 324 I~iWd~~~~~~~~--~~~~~h~-~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
++.||+ ...+.. ....++. ..+.....++++++|+..+..|.|.|....+++.+..++.......++|..++ .
T Consensus 282 ~ysyDl-e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds---k 357 (514)
T KOG2055|consen 282 LYSYDL-ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS---K 357 (514)
T ss_pred EEEeec-cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC---c
Confidence 999999 444332 3333443 46778889999999999999999999999999999999998888888888544 6
Q ss_pred EEEEEEcCCcEEEEECCCCceEEEEcccCC-ceeEEEEeCCCCEEEEEeCCCcEEEEECCC------CcEEEEeecCCCC
Q 007757 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMH 473 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~------~~~~~~~~~~~~~ 473 (590)
.|++++.+|.|++||++...++..+....+ .-+++|.++++.+|++||..|.|.|||..+ ++++..+.. ...
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-Ltt 436 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-LTT 436 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh-hhe
Confidence 788888899999999999988888753322 336677779999999999999999999743 455555543 566
Q ss_pred cccEEEEcCCCCEEEEEEc--CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 474 SMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.|+++.|++++.+||.+|. .+.+++-.+.+......+...... -+.++|++|||.|.+|+.|...|+|.+|.+.
T Consensus 437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~--vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 437 AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK--VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc--ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 8999999999999998875 477888887765544444433222 4679999999999999999999999999864
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-22 Score=213.21 Aligned_cols=245 Identities=16% Similarity=0.336 Sum_probs=197.6
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccC--CCeeEEEeccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCCCcE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVN--SGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~--~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
.+..|.|.....++||+++..|.|.+||+.. ..+.+..|..|...|+++.|++ ...+|++||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4667888877789999999999999999954 2466678899999999999999 567899999999999999998887
Q ss_pred EEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007757 378 IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 378 ~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..++.. ...+.-+.|+|.. ++.|+++...|.+++||+|.. ++...+..|.++|.|+.|+|++.+|++|+.|+.|+|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vki 246 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKI 246 (839)
T ss_pred cccccccchhhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEE
Confidence 777655 4556678888866 489999999999999999975 566778899999999999999999999999999999
Q ss_pred EECCCCcEEEEeecCCCCcccEEEEcCCCCE-EEEEE--cCCeEEEEEccCceeecccccccCcccccceEEEEEcC-CC
Q 007757 456 WEFGIPVVIKYISEPHMHSMPSISLHPNTNW-LAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DG 531 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~-l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg 531 (590)
||+...............++.++.|-|...+ |++++ .|-.|+|||++.... +...+..| ...++.++|.. |-
T Consensus 247 Wd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P~~t~~eH--~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 247 WDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--PYATFLEH--TDSVTGIAWDSGDR 322 (839)
T ss_pred EeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--cceeeecc--CccccceeccCCCc
Confidence 9998654433333346778999999998654 66655 367899999986543 34566666 45577788855 55
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 007757 532 RFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 532 ~~l~sgs~dg~I~iwd~~t~ 551 (590)
..|.+++.||.|..-.+++.
T Consensus 323 ~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeEeecCccHHHHhhhhcc
Confidence 67889999998876655443
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=1.8e-20 Score=187.94 Aligned_cols=290 Identities=17% Similarity=0.268 Sum_probs=225.4
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEcc-C---------C----------------------------
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV-N---------S---------------------------- 332 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~-~---------~---------------------------- 332 (590)
..+....|.++|.+++...+ |. |+||+.|..|..||-. + .
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~-Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRD-GT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred EEeEeeecCCceEEEEEecC-cc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 34444499999999999988 65 5559999999999841 0 0
Q ss_pred -CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcE
Q 007757 333 -GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 333 -~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 411 (590)
.....+..+|......++.+|+.++|++|+.|+.+++|+ ..+++.+.....+..+..|+|.+ .+++|...|..
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w 430 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG----VVAVGTATGRW 430 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc----eEEEeeccceE
Confidence 001112347888899999999999999999999999999 67788888888888899999865 69999999999
Q ss_pred EEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007757 412 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 412 ~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~ 490 (590)
.+.|.++...+..-.. ..+++++.|+|+|.+|+.|+.|+.|+||-+... ........-+..+|+.+.|++++++|.+.
T Consensus 431 ~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 9999999776666554 889999999999999999999999999998543 34444434455899999999999999999
Q ss_pred EcCCeEEEEEccCceeeccccccc-------------CcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEE
Q 007757 491 SLDNQILIYSTRERFQLNKKKRFA-------------GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---KVF 554 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~-------------~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~---~~~ 554 (590)
+.|-.|..|...........+... +......+..++-+.+.+++++|+..|+|++|...-. ...
T Consensus 510 S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~ 589 (626)
T KOG2106|consen 510 SGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS 589 (626)
T ss_pred cCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc
Confidence 999999999543322221111100 0111222334555667889999999999999987543 346
Q ss_pred EEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 555 RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 555 ~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..+.+|++.|.+++|.- +.+.|++.+.|.+|..|+
T Consensus 590 he~~ghs~~vt~V~Fl~-~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 590 HEYGGHSSHVTNVAFLC-KDSHLISTGKDTSIMQWR 624 (626)
T ss_pred eeeccccceeEEEEEee-CCceEEecCCCceEEEEE
Confidence 67789999999999998 666788888999999995
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=3.5e-21 Score=199.76 Aligned_cols=240 Identities=20% Similarity=0.321 Sum_probs=197.4
Q ss_pred CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE--ccCCCCc-eE-EEEecCCCCCcEEEEEEcC
Q 007757 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--FSTGKIP-YV-VKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~--~~~~~~~-~~-~~~~~~~~~~~~lvsg~~d 408 (590)
-+..+.+.+|...|+.+++.+ +..++++|.||++++|+-...+.+.. +..+... .+ +++.+ ...-.+++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEeeccc
Confidence 356678899999999999875 44899999999999999876665542 3222221 12 44444 223469999999
Q ss_pred CcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEE
Q 007757 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 488 (590)
..|.+|.+.+..+...+.+|.+.|.|+....++. +++||.|.++++|-....... ..+|..+|.++..-|.+ .++
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~---l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS---LQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc---cCCcchheeeeeecCCC-cEE
Confidence 9999999999999999999999999999887776 999999999999986543322 45799999999999988 899
Q ss_pred EEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEE
Q 007757 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 489 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+||.|..|++|.-.+ ..+.|.+| ...|..+++-+++. +++++.||.|++|++ +|.++..+.+|..-|.++.
T Consensus 156 TgsaDKtIklWk~~~-----~l~tf~gH--tD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 156 TGSADKTIKLWKGGT-----LLKTFSGH--TDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred eccCcceeeeccCCc-----hhhhhccc--hhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 999999999997633 24678888 57788899988764 668889999999998 8999999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEeC
Q 007757 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..+ +...++|||.|++++||+
T Consensus 227 ~~~-~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 227 MAL-SDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred ecC-CCCeEEEecCCceEEEee
Confidence 666 667999999999999995
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.3e-20 Score=189.77 Aligned_cols=278 Identities=13% Similarity=0.218 Sum_probs=223.4
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccC-CCceeEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
--..+|+|++|+.+ .+.||.+-.||.|.||++.+..-+...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.++
T Consensus 23 ~~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 34578999999999 7789999999999999997766667777776 4579999999 4567889999999999999999
Q ss_pred cEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE--EEcccCCceeEEEEeCCCCEEEEEeCCCc
Q 007757 376 QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~--~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+.+..+.. +..++.++.++.. ..+++|+.||.+..++...+.+.. .+....+.|.++.|++++..+++|+.||.
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~---~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPEN---TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred ceeEEecCCCcceeEEEeCCcc---ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 98887765 5677888888876 579999999988888888776544 34566789999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecC-------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEE
Q 007757 453 LRVWEFGIPVVIKYISEP-------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~-------~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
|++||...+.....+... ...-|.++.+- ....|++|..-|.|.+||...+..+..... | ...|.++
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~---h--~adVl~L 251 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSC---H--DADVLAL 251 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhh---h--hcceeEE
Confidence 999999988777632211 12235566665 445799999999999999988766644433 3 4557789
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 526 NFSPDGRFVMSGDGEGKCWFWDWKSCKV----FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~t~~~----~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
+.++++.++++++.|+.|.-+...+.+. ......|...|.+++..+ ..+++||.|+.+.+
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAI 315 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEE
Confidence 9999999999999999999998776543 223346888899999987 28999999998865
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2e-20 Score=199.82 Aligned_cols=243 Identities=17% Similarity=0.304 Sum_probs=199.7
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC
Q 007757 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t 418 (590)
.|....+.|+|.|+|.+|++|+.||.|++|+.... ..-..+. .+..+.+++... +.|++|+.+++|.+|.+.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-----~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-----NHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-----cceEEeeccceEEEeeCCC
Confidence 68888999999999999999999999999987665 3222332 333333333322 4799999999999999998
Q ss_pred CceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEE
Q 007757 419 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~i 498 (590)
++.-..+....-++++++|+.+|.+++.||+|-.|++-++......+.+. +|..+|.++.++|++++||+.+.||.|+|
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 87665566667899999999999999999999999999998777666664 69999999999999999999999999999
Q ss_pred EEccCceeeccccccc---CcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--CCCCEEEEEEcCCC
Q 007757 499 YSTRERFQLNKKKRFA---GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLE 573 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~ 573 (590)
|++.++.....+.... .......++.++|+|+|..++....|+.|.+|+..++.....+.. +...+.++.|+| .
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-n 243 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-N 243 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-C
Confidence 9998865543333221 122245677899999988888888999999999999999888763 445589999999 6
Q ss_pred CCEEEEEeCCCcEEEeC
Q 007757 574 QSKVATCGWDGLIKYWD 590 (590)
Q Consensus 574 ~~~l~s~g~DG~I~iWD 590 (590)
+.+||+++.||.|.|||
T Consensus 244 G~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWN 260 (933)
T ss_pred CcEEeeeccCCcEEEEe
Confidence 88999999999999997
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=9.6e-20 Score=182.74 Aligned_cols=287 Identities=16% Similarity=0.293 Sum_probs=217.6
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCCC-CEEEEE--eCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCC-EEEE
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKYG-HLILSA--GMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLT 360 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~g-~~L~sg--s~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~l~s 360 (590)
.-+.-..++.+.....+|+|++|++.++ .+|+.- +.+..+.+||. ..+......+..+..|....|+|.+. ++++
T Consensus 140 dsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~sne~v~~a~FHPtd~nliit 218 (626)
T KOG2106|consen 140 DSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKTSNEVVFLATFHPTDPNLIIT 218 (626)
T ss_pred ccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhc-hhhhccCcceeccceEEEEEeccCCCcEEEE
Confidence 3344556677777888999999998644 444433 44567889999 45555555666778899999999554 5555
Q ss_pred EeCCCeEEEEECCCCcEEEEc---cCC--CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEE
Q 007757 361 ASYDKNIKYWDTETGQVIRTF---STG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 435 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~---~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i 435 (590)
++ .+.+.+|+.+.+...++. ... +.+.+++|.++++ +++|.++|.|.||+..+.+..+....|.+.|.++
T Consensus 219 ~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L 293 (626)
T KOG2106|consen 219 CG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSL 293 (626)
T ss_pred eC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEeeecCCceEEE
Confidence 54 599999999988766543 322 3445666666655 9999999999999999988888777999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCC-----------cEEEEe----------------------------ecCCCCccc
Q 007757 436 TFVDSNRRFVTSSDDKSLRVWEFGIP-----------VVIKYI----------------------------SEPHMHSMP 476 (590)
Q Consensus 436 ~~~p~~~~l~s~s~Dg~I~iwdl~~~-----------~~~~~~----------------------------~~~~~~~i~ 476 (590)
+...+|. |++|+.|..|..||-.-. ..++.+ ...|.....
T Consensus 294 ~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw 372 (626)
T KOG2106|consen 294 CMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELW 372 (626)
T ss_pred EEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccccee
Confidence 9999885 556999999999983210 001111 123556677
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 007757 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 556 (590)
Q Consensus 477 ~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~ 556 (590)
.++.+|+...+++++.|+.+++|+ .. +.... +. ....+.++.|+|.| .|+.|...|...+.|..+..++..
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~-~~-k~~wt-~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~ 443 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN-DH-KLEWT-KI-----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI 443 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc-CC-ceeEE-EE-----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE
Confidence 899999999999999999999999 22 22211 11 13445679999999 999999999999999999666655
Q ss_pred EecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 557 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 557 l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
-.. ..++++++|+| ++.+||.|+.|+.|.||
T Consensus 444 ~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 444 HTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIY 474 (626)
T ss_pred Eec-CCceEEEEEcC-CCCEEEEecCCCeEEEE
Confidence 444 78999999999 78899999999999987
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.3e-21 Score=176.63 Aligned_cols=246 Identities=18% Similarity=0.285 Sum_probs=192.9
Q ss_pred eccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc---EEEEccCCCCc-eEEEEecCCCCCcEEEEEEcCCcEEEE
Q 007757 339 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~---~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~vw 414 (590)
-..|...|.++...--|++|++|+.|++|+|+..+.+. .+..+..+..+ .-+.|. ++.-+.+|++++.||+|.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccccCcEeeEeecCceEEEE
Confidence 34688899998888889999999999999999998654 44555544333 344443 33456899999999999999
Q ss_pred ECCCCc--eEEEEcccCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCC--cEEEEeecCCCCcccEEEEcCC---C-
Q 007757 415 DMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPN---T- 484 (590)
Q Consensus 415 Dl~t~~--~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~---g- 484 (590)
.-..++ ....+..|...|++|+|.|. |-.|++++.||.|.|.+++.. .....+...|.-.+++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 998874 34456679999999999986 567899999999999998764 3444555678889999999986 4
Q ss_pred ----------CEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCC----CEEEEEeCCCcEEEEeCCC
Q 007757 485 ----------NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG----RFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 485 ----------~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~dg~I~iwd~~t 550 (590)
+.|++|+.|+.|+||+..+. .......+.+| ...+..++|.|.- .+|++++.||+|.||-...
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H--~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGH--KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhc--chhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 56999999999999998875 33333457777 6889999999963 5799999999999997652
Q ss_pred C-e--EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 551 C-K--VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 551 ~-~--~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
- . ....+......+..+.|+. .+++|+.++.|+.|.+|
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLW 283 (299)
T ss_pred ccCcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEE
Confidence 1 1 1122233456799999999 78899999999999999
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=2e-20 Score=193.85 Aligned_cols=284 Identities=19% Similarity=0.226 Sum_probs=219.7
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCee--EEEeccCCCceeEEEEecC-----------CCEEEEEeCCCeEE
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC--MRTYMGHSKAVRDISFCND-----------GTKFLTASYDKNIK 368 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~--~~~~~~h~~~V~~l~fspd-----------g~~l~s~s~Dg~I~ 368 (590)
..++.|.+. ...|...-.|..++|||+..-.+. ...+.-|+..|+++.--|- ...|++|+.|++|+
T Consensus 327 ~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCC-CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 446778888 788888899999999999543332 2344568888888876551 23599999999999
Q ss_pred EEECCCC---cEEEE-----------------------------------ccCCCCceEEEEecCCCCCcEEEEEEcCCc
Q 007757 369 YWDTETG---QVIRT-----------------------------------FSTGKIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 369 vWd~~t~---~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
+|++..+ ...+. +.......+++++|++ ..|++|..-|.
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g---qhLAsGDr~Gn 482 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG---QHLASGDRGGN 482 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc---ceecccCccCc
Confidence 9999752 11111 0011223466777655 67999999999
Q ss_pred EEEEECCCCceEEEEcccCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCC--C
Q 007757 411 IVQWDMNTKEITQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT--N 485 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g--~ 485 (590)
|++|++...+....+..|...|.|+.|+. ..++|++++.|.-|+|||....-.+......|...|+++.|.-+| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 99999999999999999999999999984 256899999999999999987766666666799999999999887 6
Q ss_pred EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec---CCC
Q 007757 486 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEG 562 (590)
Q Consensus 486 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~ 562 (590)
.+++++.|..|.+-..+.......+...........+..++..|..+++++++.|..|+|||+.+++..+.|++ |.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 78899999887654333111111111111122245677899999999999999999999999999999999985 667
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 563 VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
....+...| .+-+|++...|.+|.++|
T Consensus 643 ~lIKv~lDP-SgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 643 DLIKVILDP-SGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred ceEEEEECC-CccEEEEeecCCceEEEE
Confidence 889999999 888999999999999987
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.8e-20 Score=192.99 Aligned_cols=293 Identities=18% Similarity=0.311 Sum_probs=216.1
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCC---EEEEEeCCCcEEEEEcc-CCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGH---LILSAGMDTKVKIWDVV-NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~---~L~sgs~Dg~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
..+.++.||.+.|+|+.|-|. .. ++++|+.|+.|.+|.+. +.-.++.++.+|...+.|+ +.......+.+.|+
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADG 121 (764)
T ss_pred eeEEeccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCc
Confidence 356788999999999999998 55 79999999999999995 2335666777766555544 43222333337899
Q ss_pred eEEEEECCCCc--EEEEc--cCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC--ceEEEEcccCCceeEEEEe
Q 007757 366 NIKYWDTETGQ--VIRTF--STG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 366 ~I~vWd~~t~~--~~~~~--~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~--~~~~~~~~h~~~V~~i~~~ 438 (590)
.+.+||.+..+ +...+ ..+ -.+.|+.+.+ ..+..++++|+.+..|.++.-.+. ..+.++.+|...|.+|+|.
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 99999996555 22222 222 2334566666 344567778888888888876544 5677889999999999998
Q ss_pred CCCC---EEEEEeCCCcEEEEECCCCc------------------------EEE------EeecCCCCcccEEEEcCCCC
Q 007757 439 DSNR---RFVTSSDDKSLRVWEFGIPV------------------------VIK------YISEPHMHSMPSISLHPNTN 485 (590)
Q Consensus 439 p~~~---~l~s~s~Dg~I~iwdl~~~~------------------------~~~------~~~~~~~~~i~~i~~sp~g~ 485 (590)
..+. +|+++|.|..|+||.+.... .+. .+..+|...|.++.|+|.+.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 6544 78999999999999874322 011 11246888999999999999
Q ss_pred EEEEEEcCCeEEEEEccCceee----cccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEEe
Q 007757 486 WLAAQSLDNQILIYSTRERFQL----NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---CKVFRTLK 558 (590)
Q Consensus 486 ~l~s~s~dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t---~~~~~~l~ 558 (590)
.|++++.|.++.+|......-+ .+.....+. ++.....-|+|+++.+++-+..|..++|..+. ..+...+.
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~--a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS 358 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS--AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVIS 358 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccccc--ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccc
Confidence 9999999999999987654211 111222222 34456788999999999999999999998333 24455667
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 559 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 559 ~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+|...|.++.|+| .+.+|+|.|.|-+-|||
T Consensus 359 GH~~~V~dv~W~p-sGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 359 GHVDGVKDVDWDP-SGEFLLSVSLDQTTRLF 388 (764)
T ss_pred cccccceeeeecC-CCCEEEEeccccceeee
Confidence 9999999999999 78899999999998886
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.8e-22 Score=207.52 Aligned_cols=237 Identities=20% Similarity=0.435 Sum_probs=205.8
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
.+..|...|.|+..-.. ++.+++|+.|..+-||.+ .....+..|.+|..+|.+|.|++...+|++|+.+|+|++||++
T Consensus 23 ~~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAI-GKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhceeeeecc-ceeeccCCCceeeccccc-cCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 44579999999998444 899999999999999999 5666777799999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCC-ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCc
Q 007757 374 TGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 374 t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
.++.++++.++.. +..+.|+|.. .+++.|+.|+.+.+||++...+...+.+|...|.++.|+|+|++++++++|.+
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~---~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYG---EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhhhhhhccccCcceeeeccce---EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 9999988866543 4456677755 57789999999999999988899999999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
++|||+..++.+..+. .|...+..+.|||..-+++.|+.|++|++||+++...+...... ...|.++.|+|++.
T Consensus 178 vki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----TDGVRSLAFNPDGK 251 (825)
T ss_pred eeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----cCCceeeeecCCce
Confidence 9999999998888775 48889999999999999999999999999999876555443333 45577899999999
Q ss_pred EEEEEeCCC
Q 007757 533 FVMSGDGEG 541 (590)
Q Consensus 533 ~l~sgs~dg 541 (590)
.+++|....
T Consensus 252 ~~~~G~q~s 260 (825)
T KOG0267|consen 252 IVLSGEQIS 260 (825)
T ss_pred eeecCchhh
Confidence 999987654
No 138
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=1.7e-20 Score=186.68 Aligned_cols=212 Identities=22% Similarity=0.403 Sum_probs=174.1
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC------eeEEEeccCCCceeEEEEec-CCCEEEEEe
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCN-DGTKFLTAS 362 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s 362 (590)
+.-.+|.||.+.=++|+|++...-.|++|+.|++|++||+.... .+...+.+|...|.+++|++ +..+|++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 44457889999889999999878899999999999999995333 24567889999999999999 667899999
Q ss_pred CCCeEEEEECCC--CcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEe
Q 007757 363 YDKNIKYWDTET--GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 363 ~Dg~I~vWd~~t--~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~ 438 (590)
.|+.+.|||+++ .++...... .....|+.|+|.+ ..+|++|+.|++|.+||+|+. ..+..+.+|...|.++.|+
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 999999999995 333333332 4556788888866 489999999999999999986 5788899999999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEECCCCc-------------EEEEeecCCCCcccEEEEcCCCCE-EEEEEcCCeEEEEEccC
Q 007757 439 DSN-RRFVTSSDDKSLRVWEFGIPV-------------VIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTRE 503 (590)
Q Consensus 439 p~~-~~l~s~s~Dg~I~iwdl~~~~-------------~~~~~~~~~~~~i~~i~~sp~g~~-l~s~s~dg~I~iwd~~~ 503 (590)
|.. ..|++++.|+.+.|||+..-. .+..+..+|...|..+.|+|+..+ |++.+.|+.+.||.+..
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 975 478899999999999985321 223455678999999999999875 56678899999998763
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.1e-20 Score=177.60 Aligned_cols=291 Identities=18% Similarity=0.337 Sum_probs=215.6
Q ss_pred EecCCCCCeeEEEEcC----CCCCEEEEEeCCCcEEEEEccCCC--eeEEEec--cCCCceeEEEEecC----CCEEEEE
Q 007757 294 TWSGHTKGVSAIRFFP----KYGHLILSAGMDTKVKIWDVVNSG--KCMRTYM--GHSKAVRDISFCND----GTKFLTA 361 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp----~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~--~h~~~V~~l~fspd----g~~l~s~ 361 (590)
...+|+.+|..++|.+ +....+++.+. ..+.||....++ ..++.+. .|......++|+-+ ..+|+.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3458999999999985 22345666554 579999985454 4444443 36777888888763 3578899
Q ss_pred eCCCeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE---cccCCceeEEEE
Q 007757 362 SYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITF 437 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~---~~h~~~V~~i~~ 437 (590)
+.-|.|+|.|+.++++...+.. +..+.-+.+.|.. .+++++++.|..|++|++++..++..+ .+|.+.|.++.|
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~--~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR--PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCC--CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 9999999999999999887754 4556677777754 489999999999999999999988876 579999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEE---------------------------eecCCCCcccEEEEcCCCCEEEEE
Q 007757 438 VDSNRRFVTSSDDKSLRVWEFGIPVVIKY---------------------------ISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~---------------------------~~~~~~~~i~~i~~sp~g~~l~s~ 490 (590)
+.++.+|++++.|.+|++|++..+..... ....|...|.|+.|- |.++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 99999999999999999999974321111 112244445555553 6789999
Q ss_pred EcCCeEEEEEcc-Cceeec----------ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEE
Q 007757 491 SLDNQILIYSTR-ERFQLN----------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF--RTL 557 (590)
Q Consensus 491 s~dg~I~iwd~~-~~~~~~----------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~--~~l 557 (590)
+-++.|..|... -...+. .+..+.-.....+....+|.|-+++|+.|...|.|++||++...+. .++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 999999999872 111111 1112222222333445677888999999999999999999887652 222
Q ss_pred ec--CCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 558 KC--HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 558 ~~--h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.. ....|...+|+. ++++|+...+||+|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWD 381 (385)
T ss_pred Eeccccceeeeeeecc-cCcEEEEEeCCCcEEEEE
Confidence 22 234789999999 788999999999999997
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.9e-22 Score=206.68 Aligned_cols=254 Identities=19% Similarity=0.388 Sum_probs=216.8
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVV 390 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~ 390 (590)
..+++....+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+..+ ..+.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 4455666667778888872 24468888999988778899999999999999999877777775554 455677
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~ 470 (590)
.|.+.. .+|++|..+|.|++||+...+.++++.+|...+.++.|+|-+.++++|+.|+.+++||++...+...+..
T Consensus 77 ~f~~~E---~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s- 152 (825)
T KOG0267|consen 77 TFDTSE---RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS- 152 (825)
T ss_pred ecCcch---hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-
Confidence 777754 6899999999999999999999999999999999999999999999999999999999998888888765
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
|...+.++.|+|+|++++.++.|..++|||+..+..+ ..|.+| .+.+..+.|+|..-++++|+.|++|+|||+++
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~---~ef~~~--e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS---KEFKSH--EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeecccccccc---cccccc--cccccccccCchhhhhccCCCCceeeeeccce
Confidence 8888999999999999999999999999999877655 445555 45677789999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 551 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 551 ~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
...+...+.....|.+.+|+| ++..+++|..
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q 258 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNP-DGKIVLSGEQ 258 (825)
T ss_pred eEEeeccCCccCCceeeeecC-CceeeecCch
Confidence 999998888788999999999 5656666544
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.3e-19 Score=186.09 Aligned_cols=242 Identities=18% Similarity=0.267 Sum_probs=197.6
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-ccCC--CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~-~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t 418 (590)
....|.+|+|+.+.+.||.+-.+|.|-+|++..+=.... +..+ ..+..++|+.. ..|++.+.+|.|.-||+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~----~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG----GRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC----CeEEeecCCceEEEEeccc
Confidence 457899999999999999999999999999998754433 3332 34456666632 4588999999999999999
Q ss_pred CceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCcccEEEEcCCCCEEEEEEcCCeEE
Q 007757 419 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQIL 497 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~s~s~dg~I~ 497 (590)
++....+....++|.+++.+|.+..++.|++||.++.++....+....... ...+.+.+++|+|++..|++|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 999999999999999999999999999999999888888877665544433 3457899999999999999999999999
Q ss_pred EEEccCceeecccccccCc--c-cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCC
Q 007757 498 IYSTRERFQLNKKKRFAGH--I-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~--~-~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
+||...+..+.....-... . ....|.++.|-.++ .|++|++.|.|.+||...+.++..+..|.+.|.+++..+ +.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~ 257 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NE 257 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CC
Confidence 9999887665421111111 0 13446677777555 789999999999999999999999999999999999998 67
Q ss_pred CEEEEEeCCCcEEEe
Q 007757 575 SKVATCGWDGLIKYW 589 (590)
Q Consensus 575 ~~l~s~g~DG~I~iW 589 (590)
++|+++|.|+.|..+
T Consensus 258 d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQY 272 (691)
T ss_pred CeEEEccCCCceEEE
Confidence 799999999998654
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=5e-20 Score=179.05 Aligned_cols=249 Identities=18% Similarity=0.292 Sum_probs=187.3
Q ss_pred EecCCCCCeeEEEEcCCC-CCEEEEEeCCCcEEEEEccC---------------CCeeEEEeccCCCceeEEEEec-CCC
Q 007757 294 TWSGHTKGVSAIRFFPKY-GHLILSAGMDTKVKIWDVVN---------------SGKCMRTYMGHSKAVRDISFCN-DGT 356 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~-g~~L~sgs~Dg~I~iWd~~~---------------~~~~~~~~~~h~~~V~~l~fsp-dg~ 356 (590)
..-+|.+.|+.++-.+-+ ..+.++-+..|.|+||++.. ..+++.++.+|...=..|+||| ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 344788889988888762 45677778899999999832 2356677778888888888888 222
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEE
Q 007757 357 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT 436 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~ 436 (590)
.|++|..-+.|++|...+|.-. +. ...+.+|...|-.++
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~-------------------------------------vd----~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWK-------------------------------------VD----QRPFTGHTKSVEDLQ 264 (440)
T ss_pred ccccCccccceEeeeeccCcee-------------------------------------ec----Cccccccccchhhhc
Confidence 4667766677777765543211 00 112446999999999
Q ss_pred EeCCC-CEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccccc
Q 007757 437 FVDSN-RRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 437 ~~p~~-~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
|+|.. ..|++||.||+|+|||++.+ +....+...|...|..|.|+....+|++|+.||.++|||++..+.-.....|+
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk 344 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK 344 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE
Confidence 99964 57999999999999999987 22223335788899999999998899999999999999999876666667777
Q ss_pred CcccccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe----------------EEEEEecCC--CCEEEEEEcCCCCC
Q 007757 515 GHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCK----------------VFRTLKCHE--GVCIGCEWHPLEQS 575 (590)
Q Consensus 515 ~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~t~~----------------~~~~l~~h~--~~V~~v~~sp~~~~ 575 (590)
-| ...|++|.|+|. ...|++++.|..|.|||+.--. +-+.+-.|. ..+..+.||++-+.
T Consensus 345 ~H--k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 345 YH--KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred ec--cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 77 678999999995 5678888899999999985311 011222353 36889999999999
Q ss_pred EEEEEeCCCc
Q 007757 576 KVATCGWDGL 585 (590)
Q Consensus 576 ~l~s~g~DG~ 585 (590)
+|++.+.||.
T Consensus 423 ~lvsTa~dGf 432 (440)
T KOG0302|consen 423 LLVSTAIDGF 432 (440)
T ss_pred eEEEecccce
Confidence 9999999984
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=5.3e-20 Score=184.04 Aligned_cols=260 Identities=18% Similarity=0.250 Sum_probs=197.5
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe---eEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
+|.+++|...+.-.+++.+.|..|++|.- .++ ....-......-.|++......++++|+..++|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K--~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEK--DGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecc--cCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 39999998872222334456778999974 333 1111112222445666555668999999999999999995555
Q ss_pred EEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC-ceeEEEEeCCCCE-EEEEeCCCcEE
Q 007757 378 IRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRR-FVTSSDDKSLR 454 (590)
Q Consensus 378 ~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~-~V~~i~~~p~~~~-l~s~s~Dg~I~ 454 (590)
.+.+..+. .+.++...+. ..+|++++..|.|.+..+.++.....|....+ .|.-+.|++..+. |.+++++|.|.
T Consensus 114 hr~lkdh~stvt~v~YN~~---DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNT---DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred hhhccCCcceeEEEEecCC---cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 55554433 2334444443 36899999999999999999988777765544 5668999998775 56789999999
Q ss_pred EEECCCCcEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCE
Q 007757 455 VWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
+||+....++..+...|..+...|+|+|. ..+|++.+.|..|.+||++.......+. ...+...++|+++|.+
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~------y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT------YSHPLSTVAFSECGTY 264 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee------ecCCcceeeecCCceE
Confidence 99999999988888899999999999996 4678889999999999998654332221 2345667999999999
Q ss_pred EEEEeCCCcEEEEeCCCC-eEEEEEecCCCCEEEEEEcC
Q 007757 534 VMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 534 l~sgs~dg~I~iwd~~t~-~~~~~l~~h~~~V~~v~~sp 571 (590)
|+.|...|.|..||++.. .++.++.+|...|++++|-|
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 999999999999999864 57889999999999999988
No 144
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=2.6e-19 Score=170.90 Aligned_cols=271 Identities=18% Similarity=0.284 Sum_probs=206.3
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEEccCCC-----------eeEEEec-cCCCceeEEEEe-------cCCCEEEEEeC
Q 007757 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-----------KCMRTYM-GHSKAVRDISFC-------NDGTKFLTASY 363 (590)
Q Consensus 303 ~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~-----------~~~~~~~-~h~~~V~~l~fs-------pdg~~l~s~s~ 363 (590)
..+.|+|+ |..|++-+.|..+.+|++..+. ....+++ .....|.+.+|- |+..++++.+.
T Consensus 53 kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 53 KGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred ccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45789999 9999999999999999983211 0111111 234568888886 56789999999
Q ss_pred CCeEEEEECCCCcEEEEccCC------CCceEEEEecCCCCCcEEEEEEcCCcEEEEEC-CCCceEEEE-------cccC
Q 007757 364 DKNIKYWDTETGQVIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM-NTKEITQEY-------DQHL 429 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl-~t~~~~~~~-------~~h~ 429 (590)
+.-|++||.-+|+....+..- ....+++|++++. .|++| ....|++||+ |.|+-...+ .+..
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999999988777542 2345788888764 45554 5789999999 666422221 2346
Q ss_pred CceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc-CCeEEEEEccCceee
Q 007757 430 GAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRERFQL 507 (590)
Q Consensus 430 ~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~ 507 (590)
+-|.|++|+|... .+++++...++-||.-....++..+. .|.+.|+.+.|+++|+.|++|.. +..|.+||++....+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 7899999999765 88999999999888877777776665 69999999999999999999875 678999999865332
Q ss_pred cccccccCccc-ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 508 NKKKRFAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 508 ~~~~~~~~~~~-~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
+..+..|.. ...-......|+|++|++|+.+|.|++||++. +..+..+..|...|+.++++| --.+++|++.
T Consensus 287 --v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP-~mpilatssG 360 (406)
T KOG2919|consen 287 --VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP-IMPILATSSG 360 (406)
T ss_pred --hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc-ccceeeeccC
Confidence 233334432 22223467789999999999999999999998 787888889999999999999 4667887764
No 145
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=2e-20 Score=174.10 Aligned_cols=298 Identities=13% Similarity=0.211 Sum_probs=206.0
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec-cCCCceeEEEEecCCCEEEEEeCCC
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
+|+..+..+++|.+.|+|+.|-.+ .+|++|..-|.|++|++ .+...+..+. .|...|+.+.-.|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~l-qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVL-QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccc--hhhhcccccceEEEEEe-ecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 466777889999999999999876 45999999999999999 5666677777 57788999998887 5688999999
Q ss_pred eEEEEECCCCcEEEEcc--CCCCceE-EEEecCCCCC-cEEEEEEcC-CcEEEEECCCCceEEEE----cccCCceeEEE
Q 007757 366 NIKYWDTETGQVIRTFS--TGKIPYV-VKLNPDDDKQ-NILLAGMSD-KKIVQWDMNTKEITQEY----DQHLGAVNTIT 436 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~--~~~~~~~-~~~~~~~~~~-~~lvsg~~d-g~I~vwDl~t~~~~~~~----~~h~~~V~~i~ 436 (590)
.+.+|++..+..+..-. ..+-..| ..+.+.+... .+++.-+.. ..+.+-|......++.. ....+.+.|..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 99999998765443322 1111111 1111111111 111111110 01222222222222222 13456677776
Q ss_pred EeC-CCC--EEEEEeCCCcEEEEECCCCcEEEEee---------cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 437 FVD-SNR--RFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 437 ~~p-~~~--~l~s~s~Dg~I~iwdl~~~~~~~~~~---------~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
+.- .+. .++.|-.+|.+.+||+..+..+..+. ..|..++.++.+.+....=++++.+..+..|++...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 532 232 46778899999999998864433332 246778999999887666778888888999988643
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
...........- ....+..+.+-||++.+++++.|++|+||++++..++..++.|.+.|.+++|+| +..++|++|.|+
T Consensus 238 ~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 238 TGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDA 315 (323)
T ss_pred cCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCc
Confidence 111111111100 123355688999999999999999999999999999999999999999999999 677999999999
Q ss_pred cEEEeC
Q 007757 585 LIKYWD 590 (590)
Q Consensus 585 ~I~iWD 590 (590)
+|.+|+
T Consensus 316 rISLWk 321 (323)
T KOG0322|consen 316 RISLWK 321 (323)
T ss_pred eEEeee
Confidence 999996
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.7e-19 Score=169.47 Aligned_cols=245 Identities=18% Similarity=0.313 Sum_probs=178.3
Q ss_pred EEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc-----EEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcE
Q 007757 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 411 (590)
..+++|.+.|++++|+.||++|++++.|+.|+||+++... +++.--.-..+..+.|.|+-. .++++.-...+|
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~--s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK--SVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc--eEEEEEccCCEE
Confidence 4678999999999999999999999999999999997532 232222233667788888654 677777788899
Q ss_pred EEEECCCC---ceEE---------EEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEE
Q 007757 412 VQWDMNTK---EITQ---------EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 412 ~vwDl~t~---~~~~---------~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~ 479 (590)
++|-+... .... --..|.-.|..+-....+.+|++++.|..|.+|+++ ++.+..+.. ....-+..+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-cccccccee
Confidence 99977432 1111 112356677778888888999999999999999998 777766643 445567789
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcc---Cc--eeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC----
Q 007757 480 LHPNTNWLAAQSLDNQILIYSTR---ER--FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---- 550 (590)
Q Consensus 480 ~sp~g~~l~s~s~dg~I~iwd~~---~~--~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t---- 550 (590)
++|+|+++++++.--.|++|.+- .+ +...+...+.|| ...|..++||++...+++.+.||+++|||+.-
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH--~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH--QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc--hhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 99999999999999999999862 11 233444567788 56688999999999999999999999999742
Q ss_pred ---CeEEEEEe----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 551 ---CKVFRTLK----CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 551 ---~~~~~~l~----~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.+.++... +-.+....+.++| ++..|+... ...|+++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVF 357 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEE
Confidence 22333321 2233345899999 555444332 3345554
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.1e-19 Score=178.20 Aligned_cols=240 Identities=15% Similarity=0.227 Sum_probs=179.0
Q ss_pred eeEEEEec-------CCCEEEEEeCCCeEEEEECCCCcEEE---Ec-----------------cCCCCceEEEEecCCCC
Q 007757 346 VRDISFCN-------DGTKFLTASYDKNIKYWDTETGQVIR---TF-----------------STGKIPYVVKLNPDDDK 398 (590)
Q Consensus 346 V~~l~fsp-------dg~~l~s~s~Dg~I~vWd~~t~~~~~---~~-----------------~~~~~~~~~~~~~~~~~ 398 (590)
-.|+.|.. -|+++|.|+.|..|.|||+.-...+. .+ ..+|.-.++.+.+....
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 36899999999999999986322110 00 01233334455555566
Q ss_pred CcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccE
Q 007757 399 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 399 ~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
.++|++|+.|.+|.+||+.++++...+..|.+.|.++.|+|. ...|++|+.|++|.+.|.+.+......- ...+.|-.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEE
Confidence 689999999999999999999999999999999999999986 4678999999999999998543222111 24667899
Q ss_pred EEEcCCC-CEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeE--
Q 007757 478 ISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCKV-- 553 (590)
Q Consensus 478 i~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~t~~~-- 553 (590)
++|+|.. ..++++..||.|+-+|+|... ........| ...|.++++++. -.+|++++.++.|++|++.....
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AH--d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAH--DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEec--cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 9999865 567778889999999999864 223444445 678888999885 44688999999999999865433
Q ss_pred EEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 554 FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 554 ~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+..-...-+...|.++.|+....|+.||..+.++|||
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccccccceeecccCCCcceEEEecCccceEEEee
Confidence 2221111234677888888888999999999999997
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=4.8e-20 Score=184.50 Aligned_cols=236 Identities=17% Similarity=0.295 Sum_probs=193.6
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC---cEEEEcc---CCCCceEEEEecCCCCCcEEEEEEcCCcEEEE
Q 007757 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~---~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vw 414 (590)
.|..-|..+.++...+++++|+. |.|+|||+... ..+..+. ....+..+.+.+++ +.|++|+.-.++.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg---rtLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG---RTLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC---ceEEeccccceeeee
Confidence 58888999999999999999986 89999999643 2233332 33445566666655 679999999999999
Q ss_pred ECCCCce--EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 415 DMNTKEI--TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 415 Dl~t~~~--~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
|+..... ..++..-.-....++.+||.+..++++.||.|.|||+.+...++.+. +|...+.||.++++|..|.+|+.
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCceeecCCC
Confidence 9986643 33333333467788999999999999999999999999999888885 69999999999999999999999
Q ss_pred CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCC
Q 007757 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~ 572 (590)
|++|+.||++.+..+ ..|.....|.++.++|.+.+|+.|-.++.+.|..... .....+..|...|.++.|.+
T Consensus 572 DntvRcWDlregrql------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~- 643 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQL------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAY- 643 (705)
T ss_pred ccceeehhhhhhhhh------hhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecc-
Confidence 999999999987544 3344467788899999999999999999999988544 44455667999999999999
Q ss_pred CCCEEEEEeCCCcEEEe
Q 007757 573 EQSKVATCGWDGLIKYW 589 (590)
Q Consensus 573 ~~~~l~s~g~DG~I~iW 589 (590)
.+.++++.|.|..+..|
T Consensus 644 cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAW 660 (705)
T ss_pred cCceeeecCchhhhhhc
Confidence 78899999999998888
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1e-19 Score=180.47 Aligned_cols=245 Identities=20% Similarity=0.311 Sum_probs=183.5
Q ss_pred eEEEEcCC------CCCEEEEEeCCCcEEEEEccCCC--eeEEE------------------eccCCCceeEEEEecC-C
Q 007757 303 SAIRFFPK------YGHLILSAGMDTKVKIWDVVNSG--KCMRT------------------YMGHSKAVRDISFCND-G 355 (590)
Q Consensus 303 ~~l~fsp~------~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~------------------~~~h~~~V~~l~fspd-g 355 (590)
.|+.|... -|+++|.|++|..|.|||+.--. .+..+ -.+|+..|.+|+|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 45565432 26899999999999999983111 11111 2369999999999884 4
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeE
Q 007757 356 TKFLTASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 434 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~ 434 (590)
+.|+|||.|.+|++||+.++++..++. .+..+.++.|++... .+|++|+.|++|.+.|+|........-...+.|-.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 688999999999999999999999998 456677788877654 79999999999999999954333222234678999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 435 ITFVDSN-RRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 435 i~~~p~~-~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
++|.|.. ..|+++..||+|+-+|+|.. +++..+ ..|..+|.++++++. ..++++++.|+.|++|++.......
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~--- 410 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS--- 410 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc---
Confidence 9999865 46788899999999999988 444444 469999999999886 4578899999999999986533211
Q ss_pred cccCc-ccccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEE
Q 007757 512 RFAGH-IVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 512 ~~~~~-~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
...| ..-+..+|.++.|+-. +++.|+..+.++|||+.+...+
T Consensus 411 -v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 411 -VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred -cccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 1111 1123356677777655 4677888888999999877654
No 150
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.7e-19 Score=173.32 Aligned_cols=292 Identities=16% Similarity=0.172 Sum_probs=217.1
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC-----CCeeEEEec-cCCCceeEEEEecCCCEEEEEeCCC
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-----SGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~-----~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+-+.+|.+.|++|.|+.+ +++|++|+.|..++||++.. ..+++.... .|...|.|++|....++|++|..++
T Consensus 49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3456799999999999999 99999999999999999831 224444433 3568999999999999999999999
Q ss_pred eEEEEECCCCcEEEEccCCC---CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc-eEE--EEcccCCceeEEEEeC
Q 007757 366 NIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQ--EYDQHLGAVNTITFVD 439 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~-~~~--~~~~h~~~V~~i~~~p 439 (590)
+|.+.|+++.+.+..+.... .++.+..+|.. ++|++.+.++.|.+||.+... .+. .+........++.|+|
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D---N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD---NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCC---ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 99999999999998887654 56667777763 789999999999999998764 221 1222345677888998
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCcEEEEeec-----CC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc-
Q 007757 440 SNR-RFVTSSDDKSLRVWEFGIPVVIKYISE-----PH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK- 511 (590)
Q Consensus 440 ~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~-----~~-~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~- 511 (590)
... +|++.+..+-+-+||++.+........ +. .....++.|+|+|..|++--....-.+||+.+..+.....
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 654 567788888999999987643221110 11 2234578899999999887777777788886633221111
Q ss_pred -cccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------C-------------eEEEEEecCCCCEEEE
Q 007757 512 -RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------C-------------KVFRTLKCHEGVCIGC 567 (590)
Q Consensus 512 -~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t----------~-------------~~~~~l~~h~~~V~~v 567 (590)
...|..+...+.+++|.-|- -+++|+.+-.|++|.+.. | +.+..+++|...+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 11122233345566776554 499999999999998742 1 2356788999999999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEe
Q 007757 568 EWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 568 ~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.|+| ...+|++.|....++||
T Consensus 364 RF~~-H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 364 RFSQ-HNNLLVSSGVENSFKLW 384 (609)
T ss_pred eecC-CcceEeccchhhheecc
Confidence 9999 67799999999999999
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2e-19 Score=183.70 Aligned_cols=246 Identities=20% Similarity=0.309 Sum_probs=194.9
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEE
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~v 413 (590)
.+-..+.||.+.|++|...|.|.+|++|+.||+|+||.+.||.|++++.....+.++.|+|.+.. .+|+++. ...+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~-~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL-CVLAVAV-GECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc-eeEEEEe-cCceEE
Confidence 34456789999999999999999999999999999999999999999999999999999998764 3333333 333444
Q ss_pred EECCCCc-------------------------------------eEEEEcccCCceeEEEEeCCCCEEEEEeCC---CcE
Q 007757 414 WDMNTKE-------------------------------------ITQEYDQHLGAVNTITFVDSNRRFVTSSDD---KSL 453 (590)
Q Consensus 414 wDl~t~~-------------------------------------~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D---g~I 453 (590)
.+..-|. -+...-.|...|+.+.|+..|.+|++..-+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 4332110 012223477889999999999999987653 578
Q ss_pred EEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCE
Q 007757 454 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
.|+++.......-+. ...+.+.++.|||...+|++++ ...|+|||+........+ ..+ ..++..++++|.|.-
T Consensus 549 liHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL--~tg---~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKL--LTG---SKWISSMSIHPNGDN 621 (733)
T ss_pred EEEecccccccCchh-hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHH--hcC---CeeeeeeeecCCCCe
Confidence 999987665544333 3566789999999999999877 466999999765443322 222 356778999999999
Q ss_pred EEEEeCCCcEEEEeCCC-CeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 534 VMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 534 l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
|+.|+.|+.++.+|+.- .+++++++.|...+++|+||+ .-.++++|+.||++.|+
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVF 677 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEE
Confidence 99999999999999974 578899999999999999999 77799999999999886
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=3.8e-19 Score=183.17 Aligned_cols=272 Identities=16% Similarity=0.294 Sum_probs=209.1
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
.|..++|-|++.++++.+ +..+.|||. +++..+.++++|...|.|++|+.+|..|+||+.|..|.+|.-. -+-+..
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~-ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDT-SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeC-CCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee
Confidence 799999999944444444 357999999 7999999999999999999999999999999999999999854 334455
Q ss_pred ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 007757 381 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~ 460 (590)
++++..+.|+.|+|.. +.+++++- ...-+|......... . .....|.+++|..+|.+|+.|-.+|+|.+-+-..
T Consensus 90 YSH~D~IQCMsFNP~~---h~LasCsL-sdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT---HQLASCSL-SDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred eccCCeeeEeecCchH---HHhhhcch-hhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 6677788888888865 34555443 446677765443221 1 2345788999999999999999999999986433
Q ss_pred CcEEE-EeecCCCCcccEEEEcCCC-----CEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEE
Q 007757 461 PVVIK-YISEPHMHSMPSISLHPNT-----NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 461 ~~~~~-~~~~~~~~~i~~i~~sp~g-----~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
...++ ....+...+|.+++|+|+. ..+++.....++.+|.+.... +...+.+ .-..+++.+.++|.|+
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk~r~L-----~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGKDRAL-----NFDPCCISYFTNGEYI 237 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-ecccccC-----CCCchhheeccCCcEE
Confidence 32222 2223467789999999963 478888888899999886533 2222221 2224478999999999
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 535 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.|+.|+.+.+|- +.|-.+.++-....-|+.++.+| +++.++.|..||+|-.|+
T Consensus 238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhh
Confidence 9999999999996 67777787777778999999999 778999999999998764
No 153
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.1e-20 Score=185.83 Aligned_cols=297 Identities=21% Similarity=0.302 Sum_probs=231.8
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEec--CCCEEEEEeCCCe
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKN 366 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~ 366 (590)
.++...|.+|.+.|..|.|+.. |..|+|||.|..|.+||.......+.-..+|...|....|-| +.+.|++++.||.
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 3566788899999999999999 999999999999999999655555666678999999999988 4578999999999
Q ss_pred EEEEECC-CCcEEEE---ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE---cccCC---ceeEEE
Q 007757 367 IKYWDTE-TGQVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLG---AVNTIT 436 (590)
Q Consensus 367 I~vWd~~-t~~~~~~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~---~~h~~---~V~~i~ 436 (590)
|++=.+. ++.+..+ ......+..+++.|... ..|.+++.|+.+.-+|++.+.....+ ..+.. ...+|+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 9998764 3333322 23344555666666554 67999999999999999987543332 23333 567888
Q ss_pred EeCCCC-EEEEEeCCCcEEEEECCCCcE------EEEeec-----CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 437 FVDSNR-RFVTSSDDKSLRVWEFGIPVV------IKYISE-----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 437 ~~p~~~-~l~s~s~Dg~I~iwdl~~~~~------~~~~~~-----~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
..|.+. .|++++.|-.+++||.+.-.. +..+.. .....|++++++.++.-|++...|-.|++|.-..+
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 888766 799999999999999864221 222221 23446999999988888888888999999954322
Q ss_pred ee----------ecccccccCcccccceEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCC
Q 007757 505 FQ----------LNKKKRFAGHIVAGYACQVNF-SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 573 (590)
Q Consensus 505 ~~----------~~~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~ 573 (590)
.- ......++||.+...|..+.| -|...|+++|+.-|.|+||+-++++++..+.+....|+|+.-||.
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~- 447 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH- 447 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC-
Confidence 11 122334889988888888876 688999999999999999999999999999987779999999994
Q ss_pred CCEEEEEeCCCcEEEe
Q 007757 574 QSKVATCGWDGLIKYW 589 (590)
Q Consensus 574 ~~~l~s~g~DG~I~iW 589 (590)
-.+|||+|.|..||||
T Consensus 448 ~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 448 LPVLASSGIDHDVKIW 463 (559)
T ss_pred CchhhccCCccceeee
Confidence 5599999999999999
No 154
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-18 Score=190.71 Aligned_cols=304 Identities=17% Similarity=0.262 Sum_probs=223.9
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC------CeeEEEeccCCCceeEEEEecCCCEEEE
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~------~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
....++..+..|+..|..++.++..+.+++|||.||+|++|++..- .+...++......+.++.+.+.+..||.
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 3456888999999999999999987799999999999999998421 1344455556788999999999999999
Q ss_pred EeCCCeEEEEECCCC-------cEEEEccCCCCceEEEEec-CC-CCCcEEEEEEcCCcEEEEECCCCceEEEEc--ccC
Q 007757 361 ASYDKNIKYWDTETG-------QVIRTFSTGKIPYVVKLNP-DD-DKQNILLAGMSDKKIVQWDMNTKEITQEYD--QHL 429 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~-------~~~~~~~~~~~~~~~~~~~-~~-~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~--~h~ 429 (590)
++.||.|++.+++-. .+.+.........++.+.. .. .....++.+...+.|..||+++....+.++ ...
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 999999999998752 1222222233333333322 11 222488899999999999999886665553 345
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCC---CEEEEEE--cCCeEEEEEccCc
Q 007757 430 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT---NWLAAQS--LDNQILIYSTRER 504 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g---~~l~s~s--~dg~I~iwd~~~~ 504 (590)
|.|++++.+|.+.++++|+..|.+.+||++-..++..+..++..+|..+..+|-. ...++++ ..+.|.+|++.++
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 7899999999999999999999999999999999999988888999999988753 3444444 5688999999887
Q ss_pred eeecccccccCc--------------ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE----------------
Q 007757 505 FQLNKKKRFAGH--------------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF---------------- 554 (590)
Q Consensus 505 ~~~~~~~~~~~~--------------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~---------------- 554 (590)
.+...+..-.+. .........++...+.++++|++|..|+.||.......
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~ 1355 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSE 1355 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccch
Confidence 544332221000 00111222344556678999999999999996431100
Q ss_pred --------------------------------EEE--------ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 555 --------------------------------RTL--------KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 555 --------------------------------~~l--------~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..+ ..|..+|+++++...+..+|++++.||.|+||-
T Consensus 1356 s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1356 SYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 001 136778999988887778999999999999993
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=2.2e-19 Score=174.62 Aligned_cols=221 Identities=20% Similarity=0.305 Sum_probs=168.1
Q ss_pred eccCCCceeEEEEecCC--CEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC
Q 007757 339 YMGHSKAVRDISFCNDG--TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg--~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl 416 (590)
...|.+.|+.+.-.+-+ .+.++-+..|.|.||++... ++.+.. .+... -+
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~------------------------~~~~~-~~- 198 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSE------------------------PGLEV-KD- 198 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcC------------------------ccccc-cc-
Confidence 34677778877777754 45555567899999998532 111111 00000 00
Q ss_pred CCCceEEEEcccCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEE--EeecCCCCcccEEEEcCCC-CEEEEEEc
Q 007757 417 NTKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIK--YISEPHMHSMPSISLHPNT-NWLAAQSL 492 (590)
Q Consensus 417 ~t~~~~~~~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~--~~~~~~~~~i~~i~~sp~g-~~l~s~s~ 492 (590)
...+++.++.+|.+.-..|+|+|-. ..|++|..-+.|++|...++.-.. .-...|..+|-.++|+|.. ..|++|+.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 3346788889999999999999832 358888888999999987653221 1122488899999999974 58999999
Q ss_pred CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEEecCCCCEEEEEE
Q 007757 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---CKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t---~~~~~~l~~h~~~V~~v~~ 569 (590)
||.|+|||++.+........ +.| .+-|..|.|+.+-.+|++|+.||+++|||+++ ++++..|+-|..+|+++.|
T Consensus 279 DgsIrIWDiRs~~~~~~~~~-kAh--~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVST-KAH--NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred CceEEEEEecCCCccceeEe-ecc--CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence 99999999998743322222 445 45788899999988999999999999999865 6789999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEeC
Q 007757 570 HPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 570 sp~~~~~l~s~g~DG~I~iWD 590 (590)
+|.+.+.|+++|.|..|.|||
T Consensus 356 ~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 356 HPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred ccccCceEEeccCCCcEEEEE
Confidence 999999999999999999998
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.3e-16 Score=166.90 Aligned_cols=304 Identities=28% Similarity=0.545 Sum_probs=234.2
Q ss_pred cccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEEccCCCeeEEEec
Q 007757 262 EETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYM 340 (590)
Q Consensus 262 ~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~ 340 (590)
...|...+.|-... +...+..+.+|...|.++.|+|+ +..+++++. |+.+++|++ .....+..+.
T Consensus 130 ~~~d~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 195 (466)
T COG2319 130 SSLDGTVKLWDLST------------PGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDL-RTGKPLSTLA 195 (466)
T ss_pred CCCCccEEEEEecC------------CCeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEc-CCCceEEeec
Confidence 34466666664332 34677889999999999999999 778888885 999999999 4578888899
Q ss_pred cCCCceeEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEE-EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC
Q 007757 341 GHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t 418 (590)
+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..+.......+.+.. .++++++.++.+++|+++.
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecC
Confidence 9999999999999998 55666999999999999888887 45544433322455544 6788999999999999997
Q ss_pred Cce-EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee-cCCCCcccEEEEcCCCCEEEEE-EcCCe
Q 007757 419 KEI-TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNTNWLAAQ-SLDNQ 495 (590)
Q Consensus 419 ~~~-~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~s~-s~dg~ 495 (590)
... +..+..|...|.++.|.|++..+++++.|+.+.+|++.......... ..+...+..+.+.+++..++.+ ..|+.
T Consensus 273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 352 (466)
T COG2319 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352 (466)
T ss_pred CCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCc
Confidence 764 44446788999999999988888889999999999998877666654 3455578888883332455555 67889
Q ss_pred EEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCC
Q 007757 496 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS-GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 496 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s-gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
+.+|++..... ....... ..+..+.+++ ...++. +..++.+.+|+.........+..+...+..+.+.+ ++
T Consensus 353 ~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 424 (466)
T COG2319 353 IRLWDLRTGKP---LKTLEGH---SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DG 424 (466)
T ss_pred EEeeecCCCce---eEEecCC---ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECC-CC
Confidence 99999877641 1111111 1166788888 544444 68899999999999988887776546788899998 67
Q ss_pred CEEEEEeCCCcEEEeC
Q 007757 575 SKVATCGWDGLIKYWD 590 (590)
Q Consensus 575 ~~l~s~g~DG~I~iWD 590 (590)
..+++++.++.+++|+
T Consensus 425 ~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 425 KSLASGSSDNTIRLWD 440 (466)
T ss_pred cEEEEecCCCcEEEEe
Confidence 7888899999999996
No 157
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3e-19 Score=171.90 Aligned_cols=272 Identities=17% Similarity=0.240 Sum_probs=194.1
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEec--CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc--e
Q 007757 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--Y 388 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~--~ 388 (590)
..+|++-..|.|+|||. .+++.+..+++|...++.+.|.. ....+.+|+.||+|++||+++......+.....+ .
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 57888888999999999 57899999999999999999988 5678999999999999999988766655443322 2
Q ss_pred EEEEecCCCCCcEEEEEE----cCCcEEEEECCCCce-EEEE-cccCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCC
Q 007757 389 VVKLNPDDDKQNILLAGM----SDKKIVQWDMNTKEI-TQEY-DQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~----~dg~I~vwDl~t~~~-~~~~-~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~ 461 (590)
.+++... -+.+++++|. .+-.|.+||+|..+. +..+ ..|..-|++++|+|. .+.|++||.||.|.|||+...
T Consensus 120 f~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLN-CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeecc-CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 2333322 2446777775 467899999998765 4443 579999999999996 468999999999999999765
Q ss_pred cE----EEEeecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEccCceeecccccc-------cCcccccceEEEEEcC
Q 007757 462 VV----IKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRF-------AGHIVAGYACQVNFSP 529 (590)
Q Consensus 462 ~~----~~~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~v~~sp 529 (590)
.. ...+ .+..+|.++.|+.++ +.|.+-+......+|++..+......... .......++...-..-
T Consensus 199 ~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 199 NEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred cchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 32 1222 366779999999876 45778888999999999876533222111 0011122333222223
Q ss_pred CCCEEEEEeC-CCcEEEEeCC---C---CeEEEEEec-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 530 DGRFVMSGDG-EGKCWFWDWK---S---CKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 530 dg~~l~sgs~-dg~I~iwd~~---t---~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
++..++.++. -|...++-+. + .+.+..+.+ |...|+++.|.. ...++.|||.||.+.+|
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAW 343 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEE
Confidence 4445554444 5555555433 2 344566666 666788888876 67799999999999999
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.3e-16 Score=166.79 Aligned_cols=287 Identities=29% Similarity=0.550 Sum_probs=222.6
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC-ceeEEEE-ecCCC-EEEEEeC-CCeEEE
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK-AVRDISF-CNDGT-KFLTASY-DKNIKY 369 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~-~V~~l~f-spdg~-~l~s~s~-Dg~I~v 369 (590)
.+.+|...|.++.|.+. +..++.++.|+.+.+|+.......+..+.++.. .+..+.+ ++++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 56789999999999999 889999999999999999433326777776443 7777777 78777 5555455 999999
Q ss_pred EECCC-CcEEEEccCC-CCceEEEEecCCCCCcEEEEEEc-CCcEEEEECCCCceEEEEcccCCceeEEEEeCCCC-EEE
Q 007757 370 WDTET-GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFV 445 (590)
Q Consensus 370 Wd~~t-~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~-dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~-~l~ 445 (590)
|+... ......+..+ .....+.+.+... .+++++. ++.+++|++..+..+..+..|...|.++.|+|++. .++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99998 5555555443 4445677777653 6777775 99999999999889999999999999999999998 555
Q ss_pred EEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEE
Q 007757 446 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
+++.|+.|++||......+......|.... ...|+|++.++++++.|+.+++|++...... ...+.+| ...+.++
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~--~~~v~~~ 290 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL--LRTLSGH--SSSVLSV 290 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE--EEEEecC--CccEEEE
Confidence 559999999999886666663233455444 3389999999999999999999999865541 1112344 5678889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe--cCCCCEEEEEEcCCCCCEEEEE-eCCCcEEEeC
Q 007757 526 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 590 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~--~h~~~V~~v~~sp~~~~~l~s~-g~DG~I~iWD 590 (590)
.|+|++..+++++.|+.+.+|+..+........ .|...+..+.| +.+...++.+ ..|+.+.+|+
T Consensus 291 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeee
Confidence 999999999889989999999999888777776 78888999999 5232455555 6888999885
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1e-19 Score=198.94 Aligned_cols=279 Identities=19% Similarity=0.328 Sum_probs=207.0
Q ss_pred EEEEcCCCCCEEEEE----------eCCCcEEEEEccCCC-----eeEEEeccCCCceeEEEEecCCCE----EEEEeCC
Q 007757 304 AIRFFPKYGHLILSA----------GMDTKVKIWDVVNSG-----KCMRTYMGHSKAVRDISFCNDGTK----FLTASYD 364 (590)
Q Consensus 304 ~l~fsp~~g~~L~sg----------s~Dg~I~iWd~~~~~-----~~~~~~~~h~~~V~~l~fspdg~~----l~s~s~D 364 (590)
.++|+|.+..++++| +.+.++-||.+.... +.+..+ .-....+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 467888853466655 335566777662111 122222 23456789999997765 8889999
Q ss_pred CeEEEEECCC---Cc---EEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc--ccCCceeEE
Q 007757 365 KNIKYWDTET---GQ---VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTI 435 (590)
Q Consensus 365 g~I~vWd~~t---~~---~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~--~h~~~V~~i 435 (590)
|.|.+||... +. .+.++.. ...+..+.|++ ..++++++|+.+|.|.|||+...+.-..+. ...+.|.++
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~--~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP--FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccc--cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999865 22 2222222 23334455555 455899999999999999998765444442 245689999
Q ss_pred EEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCC-CcccEEEEcCCC-CEEEEEEcC---CeEEEEEccCceeecc
Q 007757 436 TFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNT-NWLAAQSLD---NQILIYSTRERFQLNK 509 (590)
Q Consensus 436 ~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~-~~i~~i~~sp~g-~~l~s~s~d---g~I~iwd~~~~~~~~~ 509 (590)
+|+.. ...|++++.+|.+.|||++..+.+..+..... ..+..+.|||+. ..|++++.| -.|.+||+|... ..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cc
Confidence 99864 44688999999999999999988777765333 347789999986 356666655 359999998643 33
Q ss_pred cccccCcccccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 510 KKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
.+.+.+| ...|.++.|++.+ ++|++++.|++|.+|+..+++.+..+.....-+..+.|+|.+..+|+.++.||.|.|
T Consensus 246 ~k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 246 LKILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred hhhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence 4566777 4568889999966 899999999999999999999999999888899999999988889999999999998
Q ss_pred e
Q 007757 589 W 589 (590)
Q Consensus 589 W 589 (590)
+
T Consensus 324 ~ 324 (1049)
T KOG0307|consen 324 Y 324 (1049)
T ss_pred e
Confidence 7
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=5.9e-19 Score=176.61 Aligned_cols=220 Identities=18% Similarity=0.281 Sum_probs=182.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEc
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~ 381 (590)
-.|++.... ..++++|+..+.|+|||+ ....+.+.+++|...|+++.++....+|++++..|.|.|..+.++.....|
T Consensus 82 ~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl-~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 82 AFCVACASQ-SLYEISGGQSGCVKIWDL-RAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred HHHHhhhhc-ceeeeccCcCceeeehhh-HHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence 344544444 578999999999999999 577788889999999999999999999999999999999999999888888
Q ss_pred cCCCCc--eEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-cccCCceeEEEEeCCCC-EEEEEeCCCcEEEEE
Q 007757 382 STGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWE 457 (590)
Q Consensus 382 ~~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-~~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwd 457 (590)
..+... ..+.+++. +..+|.+++.+|.|.+||+....++..+ ..|..+...|||+|.+. +|++.+.|+.|.+||
T Consensus 160 ~~~sgqsvRll~ys~s--kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPS--KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ecCCCCeEEEeecccc--cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 765333 34556554 4588999999999999999988766654 57999999999999765 678889999999999
Q ss_pred CCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCC
Q 007757 458 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
++.......+. ..++...++|.++|.+|++|...|.|..||++..... ......| ...|++++|-|..
T Consensus 238 ~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P--v~v~sah--~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 238 IRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP--VAVRSAH--DASVTRVAFQPSP 305 (673)
T ss_pred cccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCCCC--ceEeeec--ccceeEEEeeecc
Confidence 99888777774 5678999999999999999999999999999875433 3444455 4458889997654
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.9e-19 Score=172.34 Aligned_cols=262 Identities=18% Similarity=0.354 Sum_probs=189.1
Q ss_pred cceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe
Q 007757 255 KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK 334 (590)
Q Consensus 255 ~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~ 334 (590)
..+|++.+++-.-+|.. ++...++...+.||...|+.|.|+|...++|++||.|..|++|++ .+..
T Consensus 104 ~~p~la~~G~~GvIrVi-------------d~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI-~~~~ 169 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVI-------------DVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI-QTDV 169 (385)
T ss_pred CCeeEEeecceeEEEEE-------------ecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec-cCCe
Confidence 45566655544444432 455667888999999999999999998899999999999999999 6888
Q ss_pred eEEEe---ccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcE
Q 007757 335 CMRTY---MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 335 ~~~~~---~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 411 (590)
|+..+ .+|...|.++.|+.+|.+|++|+.|.+|++|++...+....+... ..+.+...... +- .-.+
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~~t~~p-fp----t~~~ 239 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPNKTTRP-FP----TPKT 239 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCCCccCc-CC----cccc
Confidence 88876 469999999999999999999999999999999865543333221 22222221110 00 0112
Q ss_pred EEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECC-CCcEEEEee------------cCCCCcccE-
Q 007757 412 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG-IPVVIKYIS------------EPHMHSMPS- 477 (590)
Q Consensus 412 ~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~-~~~~~~~~~------------~~~~~~i~~- 477 (590)
.+.+.. +-.-|...|-|+.|. |.++++-|.++.|..|... -...+..+. .-.+..|.-
T Consensus 240 ~fp~fs------t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 240 HFPDFS------TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred cccccc------ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEE
Confidence 222221 224588999999996 5789999999999999872 111111111 112233333
Q ss_pred -EEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 478 -ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 478 -i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.+|.|-+++||.|...|.|.+||++..... ...++..+.....|.+.+||.||.+|+..+.|+.|+-||..
T Consensus 312 rf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 312 RFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEeecHHHHHHhhccCCCcEEEEECCCCCCc-cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 455677899999999999999999876554 33444445556778899999999999999999999999964
No 162
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4e-19 Score=180.99 Aligned_cols=297 Identities=17% Similarity=0.273 Sum_probs=205.8
Q ss_pred eeecccccccccceeecCCCccccCCC-------Cc-c-CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 007757 257 TFHGKEETDYQGRSWIAPPKDAKAAND-------HC-Y-IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW 327 (590)
Q Consensus 257 ~~~~~~~~d~~~r~w~~~~~~~~~~~~-------~~-~-~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iW 327 (590)
.|..+...|...+.|+..-.++...++ .. + -...+-.++..|...|+.+.|+|. ...|++|+.||+|++|
T Consensus 243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~W 321 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLW 321 (577)
T ss_pred CccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCC-CCeEEEeccccchhhh
Confidence 344556667777778444333211111 00 0 012233488899999999999998 7899999999999999
Q ss_pred EccC-------CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCc
Q 007757 328 DVVN-------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 400 (590)
Q Consensus 328 d~~~-------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
++.. .-+++.+|.+|.++|.|+++.+++..+++|+.||+|+.|++-... .+++.
T Consensus 322 nLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~----------------dp~ds--- 382 (577)
T KOG0642|consen 322 NLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQ----------------DPDDS--- 382 (577)
T ss_pred hhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCC----------------Ccccc---
Confidence 9921 236788999999999999999999999999999999999874211 01110
Q ss_pred EEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC-cccEEE
Q 007757 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSIS 479 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-~i~~i~ 479 (590)
+|.. .+...+.+|.+.|..+.+++...+|++++.||++++|+...... ..+..+..+ ...++.
T Consensus 383 -------------~dp~--vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 383 -------------YDPS--VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred -------------cCcc--hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 1111 12345678999999999999999999999999999999866555 233222222 223344
Q ss_pred EcCCC-CEEEEEEcCCeEEEEEccCceeec--ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 007757 480 LHPNT-NWLAAQSLDNQILIYSTRERFQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 556 (590)
Q Consensus 480 ~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~ 556 (590)
+-... .+.++...-+.-.++++.....+. ......+......+..+.++|.+.+.+++..|+.|+++|..+++++..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 43222 122222222222223322222111 111222222234466788999999999999999999999999999999
Q ss_pred EecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 557 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 557 l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..+|...++++++.| ++.+|++++.||.|++|.
T Consensus 527 ~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred eeeccceecceeecC-CCceEEeecCCceeehhh
Confidence 999999999999999 778999999999999994
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=1.3e-18 Score=179.32 Aligned_cols=253 Identities=19% Similarity=0.295 Sum_probs=177.6
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEE--eccCCCceeEEEEec-CCCEEEEEeCCCeEE
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT--YMGHSKAVRDISFCN-DGTKFLTASYDKNIK 368 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~--~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~ 368 (590)
+..+..|...|..+.|.|. ..+|++++.|.++++||+ ....++.. +.||...|.+++|.+ +...|++|+.||.|.
T Consensus 93 lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdv-k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDV-KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred hcccccccceeEeeccCCC-ceeEEEccCCceeeeeee-ccceeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 5667799999999999995 889999999999999999 57777666 899999999999999 567899999999999
Q ss_pred EEECCCCcE--------------------EE----EccC----CCCceE-EEEecCCCCCcEEEEEEc-CCcEEEEECCC
Q 007757 369 YWDTETGQV--------------------IR----TFST----GKIPYV-VKLNPDDDKQNILLAGMS-DKKIVQWDMNT 418 (590)
Q Consensus 369 vWd~~t~~~--------------------~~----~~~~----~~~~~~-~~~~~~~~~~~~lvsg~~-dg~I~vwDl~t 418 (590)
|||++-... .. .+.. ...+.. +......+. +.|++++. |+.|++||++.
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecc
Confidence 999863320 00 0000 011111 112222222 45666555 99999999997
Q ss_pred CceEEE--------Eccc---CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEeecC-CCCcccEEEEcCCC
Q 007757 419 KEITQE--------YDQH---LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYISEP-HMHSMPSISLHPNT 484 (590)
Q Consensus 419 ~~~~~~--------~~~h---~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~--~~~~~~~-~~~~i~~i~~sp~g 484 (590)
...... +..| .-.+.++.....|.+|++.+.|++|++|++..... ...+... .......-..+|++
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC
Confidence 643322 2223 34577888888889988888899999999865322 1111110 11112233568999
Q ss_pred CEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 007757 485 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 485 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~ 551 (590)
.+|++|+.|...++|.+..... ....+.|| ...|++++|.|.. .-+++++.|..++||++..+
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEA--PPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceEeccCCCcceeeeeecCccC--ChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999999999999876543 34556777 4557788887732 23566699999999998543
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=7.4e-18 Score=165.64 Aligned_cols=281 Identities=20% Similarity=0.327 Sum_probs=200.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC---C-----eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---G-----KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~---~-----~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
..+|..+.|.+++.+.|+||+.|..|+||-+... + +.+..+..|...|+++.|+|+|..|+||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4579999999996669999999999999987321 1 3455678899999999999999999999999999999
Q ss_pred ECC--------C-----C---cEEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCcee
Q 007757 371 DTE--------T-----G---QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 433 (590)
Q Consensus 371 d~~--------t-----~---~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~ 433 (590)
-.. + . ...+.+. ....++-++|.+++ +++++|+.|..+++||+..|.....+..|...|.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~---~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS---NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC---ceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 765 2 1 1112222 23455666777654 7899999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec------------------CC----CCcccEEEEcCCCCEEEEEE
Q 007757 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE------------------PH----MHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~------------------~~----~~~i~~i~~sp~g~~l~s~s 491 (590)
.++|.|-++++++-+.|...+.+.+.....+..... -| ..-...++|+|+|.+|++..
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 999999999999999999888887765443333210 01 11245688999999988764
Q ss_pred c----CC-----eEEEEEccCceeecccccccCcccccceEEEEEcC-----------------CCCEEEEEeCCCcEEE
Q 007757 492 L----DN-----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-----------------DGRFVMSGDGEGKCWF 545 (590)
Q Consensus 492 ~----dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-----------------dg~~l~sgs~dg~I~i 545 (590)
. .+ ..++|+-....+ +...+.+. ...+..+.|+| --++++.......|+|
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~r--P~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKR--PAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred ceeeeCCceeeceeEeeccccccC--ceeecCCC--CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 2 22 234444322111 11111111 12222233333 1233444444568999
Q ss_pred EeCCCCeEEEEEe-cCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 546 WDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 546 wd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
||..+..++.... .|-..|+.++|++ ++..|+..+.||...
T Consensus 326 ydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 326 YDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCS 367 (434)
T ss_pred eccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceE
Confidence 9999988877664 5888999999999 788999999999754
No 165
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=8.9e-18 Score=158.58 Aligned_cols=209 Identities=17% Similarity=0.276 Sum_probs=160.8
Q ss_pred ccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCCCc----------EEEEcc----CCC--CceEEEEecCCCCCcEE
Q 007757 340 MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQ----------VIRTFS----TGK--IPYVVKLNPDDDKQNIL 402 (590)
Q Consensus 340 ~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~----------~~~~~~----~~~--~~~~~~~~~~~~~~~~l 402 (590)
..|.+.|+.+...+ .|+++++|+.||.|.|||++... .+..+. .++ .+..+.|.|.+. .+|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt--GmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT--GMF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC--cee
Confidence 35889999999988 79999999999999999997543 111111 122 233455566544 689
Q ss_pred EEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEE
Q 007757 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 403 vsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~---~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~ 479 (590)
.+++.|.++++||..+.+....|+ ..+.|.+-+++|- .-++++|..+-.|++.|+.++.....+. +|...|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEE
Confidence 999999999999999998877775 4567777777764 3467888889999999999998887775 6999999999
Q ss_pred EcCCCCE-EEEEEcCCeEEEEEccCc-eeeccc--------cccc-CcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 480 LHPNTNW-LAAQSLDNQILIYSTRER-FQLNKK--------KRFA-GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 480 ~sp~g~~-l~s~s~dg~I~iwd~~~~-~~~~~~--------~~~~-~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
|+|...+ |++|+.||.|++||++.. .++..+ .... ...+.+.+..++|+.+|.++++.+.|.++++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9998775 678999999999999753 111110 1111 2223677899999999999999999999999998
Q ss_pred CCCe
Q 007757 549 KSCK 552 (590)
Q Consensus 549 ~t~~ 552 (590)
.+|+
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 7765
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.4e-19 Score=194.84 Aligned_cols=248 Identities=17% Similarity=0.288 Sum_probs=194.7
Q ss_pred CCeeEEEEcCCCCC---EEEEEeCCCcEEEEEccC-----CCeeEEEeccCCCceeEEEEec-CCCEEEEEeCCCeEEEE
Q 007757 300 KGVSAIRFFPKYGH---LILSAGMDTKVKIWDVVN-----SGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYW 370 (590)
Q Consensus 300 ~~V~~l~fsp~~g~---~L~sgs~Dg~I~iWd~~~-----~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vW 370 (590)
..-+.|+|.+.+.+ +|+.|..||.|.+||... ....+.++..|.+.|..+.|++ .+++|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34688999988444 599999999999999843 1245677888999999999999 45599999999999999
Q ss_pred ECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC--ceeEEEEeCCCC-EEEE
Q 007757 371 DTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG--AVNTITFVDSNR-RFVT 446 (590)
Q Consensus 371 d~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~--~V~~i~~~p~~~-~l~s 446 (590)
|+...+.-..+.. .....+.++.++...+++|++++.+|.+.|||++..+.+..+..+.+ .+..+.|+|++. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 9987544433321 12233445555556678999999999999999999988877766654 478899999864 5666
Q ss_pred EeCCC---cEEEEECCCCcEEEEeecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEccCceeecccccccCcccccce
Q 007757 447 SSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 447 ~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
++.|. .|.+||+|.......+...|...|.++.|++.+ .+|++++.|+.|.+|+..++..+..+.. ...++
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-----~~nW~ 299 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-----QGNWC 299 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-----CCcce
Confidence 66544 599999988766555556799999999999977 8999999999999999999876654433 24678
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe
Q 007757 523 CQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 523 ~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~ 552 (590)
..+.|+|... .+++++-||.|-|+.+..+.
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8899999766 77888899999999987654
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=6e-18 Score=165.49 Aligned_cols=208 Identities=22% Similarity=0.334 Sum_probs=166.4
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC------eeEEEeccCCCceeEEEEec-CCCEEEEEeCCCe
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 366 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~ 366 (590)
.+.||+++|..++|+|.+.+.|||||.|.+|.||.+...+ +++..+.+|...|--++|+| -.+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4569999999999999989999999999999999995433 56778899999999999999 4578999999999
Q ss_pred EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCc-eeEEEEeCCCCEEE
Q 007757 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFV 445 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~ 445 (590)
|.+|++.+|+.+.++.+...++.++|+.++ .+|++.+.|.+|+|||.++++++.+-..|.+. -..+.|..++..+.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCC---ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999999888866777777777755 68999999999999999999999998888763 45566777887444
Q ss_pred EE---eCCCcEEEEECCCCcE-EEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCc
Q 007757 446 TS---SDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRER 504 (590)
Q Consensus 446 s~---s~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~ 504 (590)
+| ..+.++-+||-..... +..........|.---|.++.+.+..++ .|+.|+.|.+...
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 44 2467899998654322 2222223445566667788888776655 6899999998654
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.2e-16 Score=147.35 Aligned_cols=274 Identities=14% Similarity=0.237 Sum_probs=188.2
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccC---------CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~---------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
.|.+-+|+|. +++|+.|+.+|.|.+..+.. ....+...++|.++|..++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3666789999 99999999999999998831 224556678999999999998 44777776 59999998
Q ss_pred CCCCcE------EEEccC------CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeC
Q 007757 372 TETGQV------IRTFST------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 372 ~~t~~~------~~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p 439 (590)
.+.... +..... ...+.+-++..++....+|+ ++.|+.++.||+++|+..+++++|...|.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 754322 111111 11122333333333334444 44899999999999999999999999999999877
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCc-------ccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccc
Q 007757 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS-------MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~-------i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 512 (590)
.+..+++|+.||++++||.++.+.+..+....... -.-.++.-+..+|++|+ ...+.+|.++.......+.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp- 244 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP- 244 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe-
Confidence 77799999999999999999999888775321111 11134445677888765 5679999998865543322
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+.+ .+..+.|- ...+++++....|.-|.+ +|.+-..+...+..+.+..|+-.--.+|-.+|....+.|+
T Consensus 245 ipa-----~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 IPA-----RVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccc-----ceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 333 34456674 446778887778888875 4444444454455677777765333455556666666553
No 169
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2e-17 Score=167.58 Aligned_cols=209 Identities=20% Similarity=0.352 Sum_probs=150.2
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEE-eccCCCceeEEEEec--CCCEEEEEeCCCeEE
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCN--DGTKFLTASYDKNIK 368 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~ 368 (590)
-..|.||++.|+|+.|+.+ |.+|++||.|-.+.|||.. ..+++.. -.+|...|.++.|-| +.+.+++|+.|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~-~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPF-EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCC-CCEEeecCCcceEEeecch-hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3567899999999999999 9999999999999999995 4555544 468999999999999 567899999999999
Q ss_pred EEECCCCcE----------EEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce----------EEEEccc
Q 007757 369 YWDTETGQV----------IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI----------TQEYDQH 428 (590)
Q Consensus 369 vWd~~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~----------~~~~~~h 428 (590)
|+|+...+. ...+.. +...+-.+.+.+...+.|.+++.||+|+.+|++.... +..+...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEecccccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 999985221 111111 1112222333334458999999999999999986321 1112223
Q ss_pred CCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCC------------------cEEEEeecCCC--------C---cccEE
Q 007757 429 LGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIP------------------VVIKYISEPHM--------H---SMPSI 478 (590)
Q Consensus 429 ~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~------------------~~~~~~~~~~~--------~---~i~~i 478 (590)
.-...|++++|.. .+|++|+.|-..++||.+.. .++.++...|. . .++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 3456788999864 57899999999999995310 12344433332 1 14567
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 479 SLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 479 ~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
+|+|+|.-|++.-..-.|++||+..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecC
Confidence 8999999888877777899988754
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=7.3e-17 Score=174.35 Aligned_cols=249 Identities=18% Similarity=0.322 Sum_probs=189.6
Q ss_pred CCeeEEEEcCC-CCCEEEEEeCCCcEEEEEccCCC----eeEEEecc---C----CCceeEEEEecCCCEEEEEeCCCeE
Q 007757 300 KGVSAIRFFPK-YGHLILSAGMDTKVKIWDVVNSG----KCMRTYMG---H----SKAVRDISFCNDGTKFLTASYDKNI 367 (590)
Q Consensus 300 ~~V~~l~fsp~-~g~~L~sgs~Dg~I~iWd~~~~~----~~~~~~~~---h----~~~V~~l~fspdg~~l~s~s~Dg~I 367 (590)
..|+.+.+-.. +..+|++|+.||.|+||+-+... +.+..+.+ + .+.=.-+.|.....+|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 56888887653 35789999999999999875443 33333322 1 1112446677766667777768999
Q ss_pred EEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC---ceEEEEcccCCc--eeEEEEeCCCC
Q 007757 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGA--VNTITFVDSNR 442 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~---~~~~~~~~h~~~--V~~i~~~p~~~ 442 (590)
+|||+....++..+..+....+..++.+...++++++|..||.|++||.|.. ..+..++.|... |..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999999999999988877777888888778899999999999999999865 367788889887 99999998765
Q ss_pred E-EEEEeCCCcEEEEECCCCcEEEEeec--C--CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc---ccc
Q 007757 443 R-FVTSSDDKSLRVWEFGIPVVIKYISE--P--HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK---RFA 514 (590)
Q Consensus 443 ~-l~s~s~Dg~I~iwdl~~~~~~~~~~~--~--~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~ 514 (590)
. |++|+.+|.|++||++.......+.. . ..+.++++.+|+....+|+|+. +.|.||++.... +..++ .|-
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccc
Confidence 4 99999999999999998532222211 1 1335999999999999999998 999999986533 32222 222
Q ss_pred CcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 515 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
+.. .+.+.+++|+|.--+|++|+.|..|.||.....
T Consensus 1348 ~q~-~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQR-IGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCc-CCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 222 345678999999999999999999999986544
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=3.5e-17 Score=176.77 Aligned_cols=286 Identities=17% Similarity=0.276 Sum_probs=202.0
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccC---CCceeEEEEec--CCCEEEEEeCCCeEEEEE
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH---SKAVRDISFCN--DGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h---~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd 371 (590)
+..++-..+.|+|- ...++++...-.|+|||. +.++++..|..+ ...|+.+.+-. |..++++|+.||.|+||+
T Consensus 1062 ~n~~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~-e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPF-EPQIAAADDRERIRVWDW-EKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred cCCCCCceeeecCC-CceeEEcCCcceEEEEec-ccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 33445666778888 778888887889999999 677777776544 45799999877 567899999999999996
Q ss_pred CC-----CCcEEEEcc------CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc-cCCceeEEEEe-
Q 007757 372 TE-----TGQVIRTFS------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFV- 438 (590)
Q Consensus 372 ~~-----t~~~~~~~~------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~-h~~~V~~i~~~- 438 (590)
-. ..+.+..+. .+.....+.+.+....+.++++| .-..|+|||......+..+.. ....|+++.-.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccc
Confidence 42 223333221 11111223334433444455544 478999999998877776643 33456666554
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcE--EEEeecCCCCc--ccEEEEcCCCCE-EEEEEcCCeEEEEEccCceeecccccc
Q 007757 439 DSNRRFVTSSDDKSLRVWEFGIPVV--IKYISEPHMHS--MPSISLHPNTNW-LAAQSLDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~--~~~~~~~~~~~--i~~i~~sp~g~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
..|+.|+.|..||+|++||.+.... .......|... |..+.+.++|-- |++|+.+|.|++||++........ ..
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~-~i 1297 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL-TI 1297 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc-ee
Confidence 3468999999999999999986543 33333456666 899999887654 999999999999999985333222 22
Q ss_pred cCccccc-ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-------CCCEEEEEEcCCCCCEEEEEeCCCc
Q 007757 514 AGHIVAG-YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-------EGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 514 ~~~~~~~-~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-------~~~V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
..|...+ ..+++..+++...+|+|+. +.|.||++. |+.+..++.+ .+.+.|++||| ..-++|.|+.|.+
T Consensus 1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADST 1374 (1387)
T ss_pred eeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCce
Confidence 2222123 4788999999999999998 999999974 3433333322 34679999999 5668899999999
Q ss_pred EEEe
Q 007757 586 IKYW 589 (590)
Q Consensus 586 I~iW 589 (590)
|.||
T Consensus 1375 V~iY 1378 (1387)
T KOG1517|consen 1375 VSIY 1378 (1387)
T ss_pred EEEe
Confidence 9987
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=5.9e-17 Score=152.72 Aligned_cols=259 Identities=20% Similarity=0.343 Sum_probs=193.4
Q ss_pred CCcEEEEEccCCCe--eEEEeccCCCceeEEEEec-CCCEEEEEeCC-------CeEEEEECCCC---------cEEEEc
Q 007757 321 DTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCN-DGTKFLTASYD-------KNIKYWDTETG---------QVIRTF 381 (590)
Q Consensus 321 Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~D-------g~I~vWd~~t~---------~~~~~~ 381 (590)
|+.|.+-.+...+. ....|..|.+.|..|+-+| +.+.|+++..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 56777777643332 2245677889999999999 55556665442 35789987532 233334
Q ss_pred cC--CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce-EEEEc-----ccCCceeEEEEeC--CCCEEEEEeCCC
Q 007757 382 ST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYD-----QHLGAVNTITFVD--SNRRFVTSSDDK 451 (590)
Q Consensus 382 ~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~-~~~~~-----~h~~~V~~i~~~p--~~~~l~s~s~Dg 451 (590)
.. .....|+.|.|+.+ -+++..|..|.+|++..+.. +..+. .+....++-+|+| +++.+++.+ |+
T Consensus 119 dteavg~i~cvew~Pns~----klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~ 193 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSD----KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DS 193 (370)
T ss_pred CHHHhCceeeEEEcCCCC----eeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CC
Confidence 32 22457888888554 33444599999999987754 44432 2455678889998 566666665 79
Q ss_pred cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCC
Q 007757 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
++..||+++......+...|...+..+.|+|+.. +|++|+.||.|+|||++... .....+.+| ..++.++.|+|.
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~H--sHWvW~VRfn~~ 269 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGH--SHWVWAVRFNPE 269 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCC--ceEEEEEEecCc
Confidence 9999999999999999999999999999999865 67888999999999998643 234556666 678999999994
Q ss_pred -CCEEEEEeCCCcEEEEeCCCC-----------------------------eEEEEEecCCCCEEEEEEcCCCCCEEEEE
Q 007757 531 -GRFVMSGDGEGKCWFWDWKSC-----------------------------KVFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 531 -g~~l~sgs~dg~I~iwd~~t~-----------------------------~~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
.++|++|++|..|.+|...+- ..+.++..|...|.+++|+..++-++|+-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 667889999999999964321 13446777999999999999899999999
Q ss_pred eCCCcEEE
Q 007757 581 GWDGLIKY 588 (590)
Q Consensus 581 g~DG~I~i 588 (590)
+.||.+.|
T Consensus 350 SYDGRviI 357 (370)
T KOG1007|consen 350 SYDGRVII 357 (370)
T ss_pred ccCceEEe
Confidence 99999876
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=3.6e-17 Score=167.92 Aligned_cols=152 Identities=18% Similarity=0.273 Sum_probs=108.3
Q ss_pred eecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEE
Q 007757 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 337 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~ 337 (590)
++++++.|..+++|..+........ .| -..+.+..-.|-|+.|+|....+|+++ ..|+++|||+ .+++.+.
T Consensus 94 LLAT~S~D~~VKiW~lp~g~~q~LS----ap---e~~~g~~~~~vE~l~fHpTaDgil~s~-a~g~v~i~D~-stqk~~~ 164 (1012)
T KOG1445|consen 94 LLATCSRDEPVKIWKLPRGHSQKLS----AP---EIDVGGGNVIVECLRFHPTADGILASG-AHGSVYITDI-STQKTAV 164 (1012)
T ss_pred hhhcccCCCeeEEEecCCCcccccC----Cc---ceeecCCceEEEEeecccCcCceEEec-cCceEEEEEc-ccCceee
Confidence 3489999999999988722111110 01 112334455789999999955555555 5689999999 6889999
Q ss_pred EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC-CcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC---CcEEE
Q 007757 338 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD---KKIVQ 413 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d---g~I~v 413 (590)
.+.+|...|.++.|+.||.+|++++.|..|+|||.+. ++.++....+....-..+.+.+...+++-+|... ..|++
T Consensus 165 el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~ 244 (1012)
T KOG1445|consen 165 ELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRA 244 (1012)
T ss_pred cccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeee
Confidence 9999999999999999999999999999999999875 4666666555444444444444433455555433 46788
Q ss_pred EECCC
Q 007757 414 WDMNT 418 (590)
Q Consensus 414 wDl~t 418 (590)
||.+.
T Consensus 245 ~Dtr~ 249 (1012)
T KOG1445|consen 245 YDTRK 249 (1012)
T ss_pred eeccc
Confidence 88874
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=5.5e-17 Score=159.54 Aligned_cols=283 Identities=17% Similarity=0.290 Sum_probs=193.5
Q ss_pred eecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC------
Q 007757 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN------ 331 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~------ 331 (590)
++++++.|+++|+|.........-. ..-..+..|..|...|++|+|+|+ |.+|+||+.+|.|.+|....
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~----~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGD----MKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDA 102 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCc----eeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccc
Confidence 7789999999999987655432211 233566788999999999999999 99999999999999998630
Q ss_pred -C--------CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcE
Q 007757 332 -S--------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 332 -~--------~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 401 (590)
. ....+.+.+|...|..++|+|++.++++++.|..+++||+..|+.+..+..+ +.+..++|.|.. .+
T Consensus 103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~---qy 179 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN---QY 179 (434)
T ss_pred cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh---hh
Confidence 1 2345677899999999999999999999999999999999999998877543 344455555543 46
Q ss_pred EEEEEcCCcEEEEECCCCceEEEEc-------------------ccC----CceeEEEEeCCCCEEEEEeC----CC---
Q 007757 402 LLAGMSDKKIVQWDMNTKEITQEYD-------------------QHL----GAVNTITFVDSNRRFVTSSD----DK--- 451 (590)
Q Consensus 402 lvsg~~dg~I~vwDl~t~~~~~~~~-------------------~h~----~~V~~i~~~p~~~~l~s~s~----Dg--- 451 (590)
+++-+.|...+.+.+...+.+.... -|. .-...++|+|+|..|++.+. .+
T Consensus 180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~ 259 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVF 259 (434)
T ss_pred hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCcee
Confidence 7777777766666665433222211 011 12355788899988887542 22
Q ss_pred --cEEEEECCCC-cEEEEeecCCCCcccEEEEcC------------------CCCEEEEEEcCCeEEEEEccCceeeccc
Q 007757 452 --SLRVWEFGIP-VVIKYISEPHMHSMPSISLHP------------------NTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 452 --~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp------------------~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 510 (590)
..++|+-... .++..+. ....+...+.++| .+..+++++ .+.|++||..+..++...
T Consensus 260 ~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v 337 (434)
T KOG1009|consen 260 RNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVV 337 (434)
T ss_pred eceeEeeccccccCceeecC-CCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEE
Confidence 2344543221 1222221 1222233333333 233444544 567999999876555433
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 007757 511 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
.. ++-..++.++|++||.+|+..+.||...+.-+...++-
T Consensus 338 ~n----ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 338 DN----IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ee----eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 32 23567889999999999999999999888777665543
No 175
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=3.1e-17 Score=163.34 Aligned_cols=253 Identities=17% Similarity=0.200 Sum_probs=185.5
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe--eEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
-+..+..|+++|.+|.|+|.+...+++.|+||+|++-|+ +... .+..+..-...+.++.|+.+...++.+..=|...
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~-~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~ 304 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF-EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN 304 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeee-cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceE
Confidence 456778999999999999998899999999999999999 3332 2333333556678888998888888887778999
Q ss_pred EEECCCCcE-EEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc----eEEEEcccCCceeEEEEeCCCC
Q 007757 369 YWDTETGQV-IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 369 vWd~~t~~~-~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~----~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
+||++++.. ...+.. ...+..+.++|..+ .+|++++.|++.+|||+|... ++...-.|...|++..|+|.+.
T Consensus 305 ~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p--~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 305 VIDLRTDGSEYENLRLHKKKITSVALNPVCP--WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred EEEeecCCccchhhhhhhcccceeecCCCCc--hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 999998765 332322 23556677777554 789999999999999998642 2233346999999999999998
Q ss_pred EEEEEeCCCcEEEEECC----CCcEEEEeecCCCC----cccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccccc
Q 007757 443 RFVTSSDDKSLRVWEFG----IPVVIKYISEPHMH----SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~----~~~~~~~~~~~~~~----~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
.|++.+.|..|+|||.. ...+...+...+.. ......|.|+..+|++|..-..|-|||-..++.+.. +.
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e---l~ 459 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE---LH 459 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee---cc
Confidence 99999999999999983 33333344322221 234568999999999999999999999887654432 22
Q ss_pred CcccccceEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 007757 515 GHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~ 549 (590)
........+-..|+|-+. +++.|+..|.|+||--+
T Consensus 460 ~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 460 DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CccccccccceeecccccceeccCCccceEEEEecC
Confidence 222122333468999887 44555578899988644
No 176
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.2e-17 Score=155.39 Aligned_cols=203 Identities=15% Similarity=0.252 Sum_probs=158.8
Q ss_pred EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007757 380 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
++.... ..++.|++.+ .+|++|+.||.|.+||+.+..+-..+.+|..+|++++|+++|+.|+++|.|..|.+||+.
T Consensus 20 tld~~~-a~~~~Fs~~G---~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 20 TLDNPL-AECCQFSRWG---DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred eccCCc-cceEEeccCc---ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 344444 6678888766 689999999999999999999889999999999999999999999999999999999999
Q ss_pred CCcEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe
Q 007757 460 IPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 460 ~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
.+.+.+.+. ...+|..+.|+|... .+++.-.+..-.+.++...........-.+. ......+..|.+.|++|++|.
T Consensus 96 ~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d-ln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 96 KGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGD-LNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred CCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccc-cccccccccccCCCCEEEEec
Confidence 999888885 567899999999643 3333334444444444432111111111111 122223356899999999999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 539 GEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..|.+.++|..+.+++..++... ..|..+.++. .+++|+.-+.|..||.|+
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYE 224 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEe
Confidence 99999999999999999998766 7889999988 788999999999999985
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=1.1e-15 Score=158.19 Aligned_cols=271 Identities=9% Similarity=0.147 Sum_probs=176.1
Q ss_pred EEEEEeCCCcEEEEEccCCCe--eEEEeccCCCceeEEEEecCCCEEEEEe-CCCeEEEEECC-CCcE--EEEccCCCCc
Q 007757 314 LILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTE-TGQV--IRTFSTGKIP 387 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~-t~~~--~~~~~~~~~~ 387 (590)
++++...++.|.+|++...+. .+..+. +.+....++++|++++|++++ .++.|.+|++. ++.. +........+
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 344557799999999943343 445554 346678899999999987765 47899999997 3432 3333334455
Q ss_pred eEEEEecCCCCCcEEEEEEcCCcEEEEECCCC----ceEEEEcccCCceeEEEEeCCCCEEEEE-eCCCcEEEEECCCCc
Q 007757 388 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKSLRVWEFGIPV 462 (590)
Q Consensus 388 ~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~----~~~~~~~~h~~~V~~i~~~p~~~~l~s~-s~Dg~I~iwdl~~~~ 462 (590)
..+.+.+++ ..++++...++.|.+|++.+. +.+..+. +.....++.++|++++++++ ..++.|.+||+....
T Consensus 83 ~~i~~~~~g--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 83 THISTDHQG--RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred eEEEECCCC--CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 566666644 245555556899999999743 2223332 33456788999999888654 456999999997643
Q ss_pred EEEE-----eecCCCCcccEEEEcCCCCEEEEEEc-CCeEEEEEccCc--e--eecccccccCc-ccccceEEEEEcCCC
Q 007757 463 VIKY-----ISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRER--F--QLNKKKRFAGH-IVAGYACQVNFSPDG 531 (590)
Q Consensus 463 ~~~~-----~~~~~~~~i~~i~~sp~g~~l~s~s~-dg~I~iwd~~~~--~--~~~~~~~~~~~-~~~~~v~~v~~spdg 531 (590)
.+.. ...+.......+.|+|++++|+++.. ++.|.+|++... . ........... ....+...+.|+|+|
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 2211 11123345678999999999988876 899999999732 1 11111111111 011234468899999
Q ss_pred CEEEEEeC-CCcEEEEeCCCCe----EEEEEecCCCCEEEEEEcCCCCCEEEEEe-CCCcEEEeC
Q 007757 532 RFVMSGDG-EGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 532 ~~l~sgs~-dg~I~iwd~~t~~----~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~iWD 590 (590)
++|+++.. ++.|.+|++.... .+..+... .....+.|+| ++.+|+++. .+++|.+|+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~-dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH-SGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC-CCCEEEEEEccCCcEEEEE
Confidence 99998864 7899999985432 23333322 2346789999 555666555 589999983
No 178
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.5e-16 Score=151.47 Aligned_cols=234 Identities=14% Similarity=0.292 Sum_probs=175.4
Q ss_pred ecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEE-cCCCCCEEEEEeCCCcEEEEEccC------
Q 007757 259 HGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVVN------ 331 (590)
Q Consensus 259 ~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~f-sp~~g~~L~sgs~Dg~I~iWd~~~------ 331 (590)
.++++.|....+|-.... --...+...|+.|.+.|..|.| +|..|+.+|+|+.|+++.||.-..
T Consensus 28 mAtCSsDq~vkI~d~~~~---------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 28 MATCSSDQTVKIWDSTSD---------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeeccCCCcEEEEeccCC---------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 356666666666643111 1234677889999999999999 467799999999999999997511
Q ss_pred --CCeeEEEeccCCCceeEEEEec--CCCEEEEEeCCCeEEEEECCCC------cEEEEcc--------CCCCceEEEEe
Q 007757 332 --SGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETG------QVIRTFS--------TGKIPYVVKLN 393 (590)
Q Consensus 332 --~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~------~~~~~~~--------~~~~~~~~~~~ 393 (590)
.-....++......|++|.|.| -|-.|++++.||.||||+.-.. .+...+. ......|+.|+
T Consensus 99 ~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn 178 (361)
T KOG2445|consen 99 GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWN 178 (361)
T ss_pred cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeec
Confidence 1134456777889999999999 6789999999999999976432 2222333 23345678888
Q ss_pred cCCCCCcEEEEEEcC-----CcEEEEECCCC----ceEEEEcccCCceeEEEEeCCC----CEEEEEeCCCcEEEEECCC
Q 007757 394 PDDDKQNILLAGMSD-----KKIVQWDMNTK----EITQEYDQHLGAVNTITFVDSN----RRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 394 ~~~~~~~~lvsg~~d-----g~I~vwDl~t~----~~~~~~~~h~~~V~~i~~~p~~----~~l~s~s~Dg~I~iwdl~~ 460 (590)
+..-...+|++|+.+ +.++||....+ ..+.++..|..+|+.|+|.|+- ..|++++.|| |+||.++.
T Consensus 179 ~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 179 PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 776667788888876 57888876543 3455678999999999999963 4689999999 99999863
Q ss_pred Cc-----------------EEEEe--ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 461 PV-----------------VIKYI--SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 461 ~~-----------------~~~~~--~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
.. .+..+ ...|...|..+.|+-.|..|++.+.||.|++|...
T Consensus 258 ~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 258 ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 11 12222 24688899999999999999999999999999764
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9.3e-16 Score=164.19 Aligned_cols=287 Identities=14% Similarity=0.218 Sum_probs=205.5
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC---CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~---~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
.|+..++|.+++|+ ++++++|..||.|.+|.-.. .....+.+.-|...|++++|+++|.+|+||+..|.+.+|.++
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 47777999999999 99999999999999996422 234556788899999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc-----------cCCceeEEEEeCCCC
Q 007757 374 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-----------HLGAVNTITFVDSNR 442 (590)
Q Consensus 374 t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~-----------h~~~V~~i~~~p~~~ 442 (590)
+++....-..+..+..+.+++++ .+......|+.|.+....+.+...++.+ ..+-.+.++++|.-+
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds---~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDS---DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCC---CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 99844444456667777777665 4677788899999998876655444432 234467788999778
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeec----C------CCCcccEEEEcCCCCEEEEEE--------cC--CeEEEEEcc
Q 007757 443 RFVTSSDDKSLRVWEFGIPVVIKYISE----P------HMHSMPSISLHPNTNWLAAQS--------LD--NQILIYSTR 502 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~----~------~~~~i~~i~~sp~g~~l~s~s--------~d--g~I~iwd~~ 502 (590)
.++..+..|.|.+||+-+...+..+.. . +.-.++.++.+..|.++++.- .| ..+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999977665544421 1 122466777777899998874 22 347788665
Q ss_pred Cceeeccc--ccccCcccccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCC----------CeEEEEEecCCCCEEEEEE
Q 007757 503 ERFQLNKK--KRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 503 ~~~~~~~~--~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~t----------~~~~~~l~~h~~~V~~v~~ 569 (590)
....-..+ .....|.....++ +.+++- ...+++++.||.++||-+.. +.+...-.-|..++++++|
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat-~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVAT-IFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEE-EEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 43222111 1223333222232 333333 33789999999999998732 1222222237789999999
Q ss_pred cCCCCCEEEEEeCCCcEEEeC
Q 007757 570 HPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 570 sp~~~~~l~s~g~DG~I~iWD 590 (590)
+. ++ .++++|.|++|.|||
T Consensus 518 s~-dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 518 SQ-DG-SLLAVSFDDTITIWD 536 (792)
T ss_pred cC-CC-cEEEEecCCEEEEec
Confidence 98 45 477788899999998
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=2.6e-16 Score=168.24 Aligned_cols=246 Identities=18% Similarity=0.278 Sum_probs=180.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCee-E----EEeccCCCceeEEEEecCC--CEEEEEeCCCeEEEEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC-M----RTYMGHSKAVRDISFCNDG--TKFLTASYDKNIKYWD 371 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~-~----~~~~~h~~~V~~l~fspdg--~~l~s~s~Dg~I~vWd 371 (590)
...|+|+.|+|...++|+.|..+|.|.+||+...... . .....|..+|+.+.|..+- .-|++++.||.|+.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4679999999998999999999999999999544432 1 1234689999999998744 4599999999999998
Q ss_pred CCCCcEEE-------------EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC---CC-----ceEEEEcccCC
Q 007757 372 TETGQVIR-------------TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TK-----EITQEYDQHLG 430 (590)
Q Consensus 372 ~~t~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~---t~-----~~~~~~~~h~~ 430 (590)
++.-.... .........++.|.+... +.|++|+..|.|..-+-. .. +....+..|.+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p--~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP--NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCC--ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 86432210 112233445666666544 789999999999874332 22 12335667899
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECC-CCcEEEEeecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEccCceeec
Q 007757 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~-~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
+|+++.++|-+..++..+.|.+++||.-. ...++..+ ..+...+++++|+|.. ..|+++..+|.|.+||+.....-.
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL-DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhh-hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 99999999988776666669999999987 44444333 3466679999999976 567778889999999997543222
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
... ..-. ....+.+.|++.|++|++|+..|++.+|++..
T Consensus 479 v~s-~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLS-QKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc-cccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 111 1111 34566788999999999999999999999853
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=1.1e-15 Score=163.38 Aligned_cols=262 Identities=15% Similarity=0.225 Sum_probs=184.5
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCCCcE-----EEEccCCCCc--eEEEE
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV-----IRTFSTGKIP--YVVKL 392 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~-----~~~~~~~~~~--~~~~~ 392 (590)
++.+.||++.....+-..+. -...|+|+.|+| +..+++.|+++|.|.+||++.+.. +......+.. ..+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 34799999966545555553 567899999999 778899999999999999987755 2222233333 34444
Q ss_pred ecCCCCCcEEEEEEcCCcEEEEECCCCce-EE-----EEc------ccCCceeEEEEeCC-CCEEEEEeCCCcEEEEEC-
Q 007757 393 NPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQ-----EYD------QHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEF- 458 (590)
Q Consensus 393 ~~~~~~~~~lvsg~~dg~I~vwDl~t~~~-~~-----~~~------~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl- 458 (590)
..+..+ .-|++++.||.|..|+++.-.. +. ... .....++++.|.+. ...|++|++.|.|.--+.
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 444433 5688899999999998875322 11 111 12346888999874 457999999999877332
Q ss_pred --CCCc----EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc-CceeecccccccCcccccceEEEEEcCCC
Q 007757 459 --GIPV----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 459 --~~~~----~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
+... ........|.++|.++.++|-+..++..+.|.+++||+.. ....+ ..+..+ ..++.+++|||--
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl---~~~~~~--~~~v~~vaWSptr 453 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL---LSLDSS--PDYVTDVAWSPTR 453 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc---hhhhhc--cceeeeeEEcCcC
Confidence 2222 1122223578899999999987766666669999999876 33222 222222 4568899999964
Q ss_pred -CEEEEEeCCCcEEEEeCCC--CeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 532 -RFVMSGDGEGKCWFWDWKS--CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 532 -~~l~sgs~dg~I~iwd~~t--~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..+++++.+|.|.|||+.. ..++.+.+.+......+.|++ .+.+|+.|...|+|.+|+
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEE
Confidence 5678888999999999854 456666666666667778887 788999999999999985
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=2.8e-15 Score=141.71 Aligned_cols=315 Identities=16% Similarity=0.286 Sum_probs=213.4
Q ss_pred eecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEc--CCCCCEEEEEeC----CCcEEEEEccC
Q 007757 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFF--PKYGHLILSAGM----DTKVKIWDVVN 331 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fs--p~~g~~L~sgs~----Dg~I~iWd~~~ 331 (590)
|......|.++|.+-.+-+.... .-....+.+.++..|- .+.++.|+ |+.+.+|+.|+. .+.|.|-.+..
T Consensus 7 ~ap~~i~~q~~~~~~s~i~~~~~---~~~~r~~eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~ 82 (364)
T KOG0290|consen 7 FAPNHIQDQQGRTYSSPIQRSSP---EGNPRRKEIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDE 82 (364)
T ss_pred CCcchhhhhhccccCCcccccCc---ccCcccceEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEcc
Confidence 33444556666666443222111 1111223355555543 47888888 444678888875 46777776643
Q ss_pred CCeeEEE--eccCCCceeEEEEecCC-----CEEEEEeCCCeEEEEECCC--CcEE--EEccC----CCCceEEEEecCC
Q 007757 332 SGKCMRT--YMGHSKAVRDISFCNDG-----TKFLTASYDKNIKYWDTET--GQVI--RTFST----GKIPYVVKLNPDD 396 (590)
Q Consensus 332 ~~~~~~~--~~~h~~~V~~l~fspdg-----~~l~s~s~Dg~I~vWd~~t--~~~~--~~~~~----~~~~~~~~~~~~~ 396 (590)
....+.. -..|.-+++.+.|.|+. .+|++++ ..+|+|.+.. .+.. ..+.. ........|.+..
T Consensus 83 ~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 83 DSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccccc
Confidence 3322222 24689999999999975 3566654 5899999873 2211 11111 1222344555555
Q ss_pred CCCcEEEEEEcCCcEEEEECCCCc---eEEEEcccCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEeec-CC
Q 007757 397 DKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISE-PH 471 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~vwDl~t~~---~~~~~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~ 471 (590)
-..+++.+++-|-+..|||+.++. ....+-.|...|..|+|...+ ..|++.+.||+||+||++...-...+.+ +.
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 666899999999999999999863 355677899999999999754 4789999999999999987654333332 22
Q ss_pred -CCcccEEEEcCC-CCEEEEEEcC-CeEEEEEccCceeecccccccCcccccceEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 007757 472 -MHSMPSISLHPN-TNWLAAQSLD-NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 472 -~~~i~~i~~sp~-g~~l~s~s~d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd 547 (590)
..+...++|+++ -+++|+-..| ..|.|.|++... .....+.+| .+.|..++|.|. ...|++++.|..+.|||
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H--~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNH--QASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcC--cccccceEecCCCCceeeecCCcceEEEEe
Confidence 567888888875 4677776655 569999998643 345667777 577889999995 56799999999999999
Q ss_pred CCCCeE------EEEEecCCCCEEEEEEcCCCCCEEEEEeCC
Q 007757 548 WKSCKV------FRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 548 ~~t~~~------~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
+.+.-. +..+. -.+.|..+.|++..+..|+.|...
T Consensus 317 l~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 317 LQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 976322 22233 456799999998778888887643
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=8.9e-17 Score=164.06 Aligned_cols=249 Identities=16% Similarity=0.245 Sum_probs=185.6
Q ss_pred CCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 007757 248 KGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW 327 (590)
Q Consensus 248 ~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iW 327 (590)
....++..+.-..++..|.....|... .. ........+.+.+|++|.++|.|+++.++ ++.+++|+.||+|+.|
T Consensus 298 r~l~~~~sep~lit~sed~~lk~WnLq--k~---~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 298 RALAFHPSEPVLITASEDGTLKLWNLQ--KA---KKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCW 371 (577)
T ss_pred hhhhcCCCCCeEEEeccccchhhhhhc--cc---CCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCceeeee
Confidence 344566666667778888888889771 11 11122334678999999999999999998 9999999999999999
Q ss_pred EccC---------CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC---CCCceEEEEecC
Q 007757 328 DVVN---------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST---GKIPYVVKLNPD 395 (590)
Q Consensus 328 d~~~---------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~---~~~~~~~~~~~~ 395 (590)
++.. ......++.||...|+.+++++....|++|+.||++++|+...... .+|.. ...+..+.+...
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 6631 1244567889999999999999888999999999999999877666 33332 333444444433
Q ss_pred CCCCcEEEEEEcCCcEEEEECCCCceEEEEcc-------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007757 396 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~-------h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~ 468 (590)
. ..+.++...-+.-.++++.....+..+.. -...++-+.++|.+.+.+++..|+.|+++|..++..+....
T Consensus 451 ~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 451 R--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred h--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee
Confidence 2 12344444444444555555544444432 12357788899999999999999999999999988877665
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee
Q 007757 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 506 (590)
.|...++++++.|+|.+|++++.|+.+++|.+....+
T Consensus 529 -a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 529 -AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred -eccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 4888999999999999999999999999999866443
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=3.6e-18 Score=180.26 Aligned_cols=240 Identities=23% Similarity=0.386 Sum_probs=189.1
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
.+.++.+.||...|+|+.|... |+++++|+.|..++||.. ++..++....||.+.|++++.+.+..+++++|.|..|+
T Consensus 180 mk~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~-et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSM-ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeec-cchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 3566778899999999999998 999999999999999997 78999999999999999999998877888888777777
Q ss_pred EEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEe
Q 007757 369 YWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
+|.+.. +.++..+.+|.++|++|+|+|-. +.+
T Consensus 258 vWrl~~--------------------------------------------~~pvsvLrghtgavtaiafsP~~----sss 289 (1113)
T KOG0644|consen 258 VWRLPD--------------------------------------------GAPVSVLRGHTGAVTAIAFSPRA----SSS 289 (1113)
T ss_pred EEecCC--------------------------------------------CchHHHHhccccceeeeccCccc----cCC
Confidence 776554 34455567899999999999854 788
Q ss_pred CCCcEEEEECCCCcEEEEeec----CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEE
Q 007757 449 DDKSLRVWEFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
.||++++||.+- ..+.+... ....-+.++.+..++.-+++++.|+.-..|.+.... .+ ...+.-
T Consensus 290 ~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------~~--~~~lif 357 (1113)
T KOG0644|consen 290 DDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------WR--SNLLIF 357 (1113)
T ss_pred CCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------hh--ccceEE
Confidence 999999999982 12222211 123346677777888889999999988887654211 11 011111
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 525 VNFSPD-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 525 v~~spd-g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.++.+ ..+.+++-.+-.+++|++.+|.+++.+.+|...+..+.+||.+..+..++|.||.+.|||
T Consensus 358 ~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 358 VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 222222 246677778889999999999999999999999999999999999999999999999998
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6.1e-16 Score=165.44 Aligned_cols=234 Identities=14% Similarity=0.135 Sum_probs=165.4
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC---CeEEEEECCCCcEEEEccCCCCceEEEEecCCC
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 397 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
+..|.|||. ++...+.+..|...+.+.+|+|+|+.|+.++.+ ..|.+||+.+++...............|+|++.
T Consensus 183 ~~~i~i~d~--dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADY--DGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECC--CCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 468999998 344456677888899999999999999988764 369999999886533322222333567777543
Q ss_pred CCcEEEEEEcCCcE--EEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCc-EEEEeecCCCC
Q 007757 398 KQNILLAGMSDKKI--VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPV-VIKYISEPHMH 473 (590)
Q Consensus 398 ~~~~lvsg~~dg~I--~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~-~~~~~~~~~~~ 473 (590)
.++++...+|.+ ++||+.++.. ..+..+...+....|+|+|+.|+.++ .++...||++.... ....+ .+..
T Consensus 261 --~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~ 335 (429)
T PRK01742 261 --RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG 335 (429)
T ss_pred --EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC
Confidence 344445567765 4557766654 44556777788999999999877665 56788888764322 22222 1222
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC--CCC
Q 007757 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW--KSC 551 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~--~t~ 551 (590)
.+..|+|+|++|++.+.++ +.+||+.++........+ ....+.|+|+|++|+.++.+|.+.+|.+ .++
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 4578999999999887755 666998776432211111 1124789999999999999998888875 468
Q ss_pred eEEEEEecCCCCEEEEEEcC
Q 007757 552 KVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~~sp 571 (590)
+.+..+..|.+.+...+|+|
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CceEEccCCCCCCCCcccCC
Confidence 88888988988899999998
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.6e-14 Score=149.42 Aligned_cols=251 Identities=12% Similarity=0.177 Sum_probs=164.5
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEE-eCCCcEEEEEccCCCee--EEEeccCCCceeEEEEecCCCEEEEEeC-CCe
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSA-GMDTKVKIWDVVNSGKC--MRTYMGHSKAVRDISFCNDGTKFLTASY-DKN 366 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sg-s~Dg~I~iWd~~~~~~~--~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~ 366 (590)
++.++. +.+....++++|+ +++|+++ ..++.|.+|++...+.. +... ........++|+|++++|++++. ++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCe
Confidence 445554 3456788999999 7777655 45889999999533332 2222 23345678999999999998875 789
Q ss_pred EEEEECCCC----cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE-----Ec-ccCCceeEEE
Q 007757 367 IKYWDTETG----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-----YD-QHLGAVNTIT 436 (590)
Q Consensus 367 I~vWd~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~-----~~-~h~~~V~~i~ 436 (590)
|.+|++++. ..+..+.....+..+.+.+++ ..++++...++.|.+||+.+...+.. .. ........+.
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred EEEEEECCCCCCCCceeeccCCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 999999743 233333333344556666643 35566777789999999986332211 11 1223467899
Q ss_pred EeCCCCEEEEEeC-CCcEEEEECCC--Cc--EEEEeec-CC----CCcccEEEEcCCCCEEEEEEc-CCeEEEEEccCce
Q 007757 437 FVDSNRRFVTSSD-DKSLRVWEFGI--PV--VIKYISE-PH----MHSMPSISLHPNTNWLAAQSL-DNQILIYSTRERF 505 (590)
Q Consensus 437 ~~p~~~~l~s~s~-Dg~I~iwdl~~--~~--~~~~~~~-~~----~~~i~~i~~sp~g~~l~s~s~-dg~I~iwd~~~~~ 505 (590)
|+|++++++++.. +++|.+|++.. +. .+..+.. +. ......+.++|++++|+++.. ++.|.+|++....
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 9999999988776 89999999973 22 2222221 11 112235889999999999864 6899999985432
Q ss_pred e-ecccccccCcccccceEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 007757 506 Q-LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWK 549 (590)
Q Consensus 506 ~-~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~ 549 (590)
. +........ ......+.|+|+|++|+++.. +++|.+|++.
T Consensus 262 ~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 262 SVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CeEEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 1 111111111 123346899999999998775 8899999874
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=6.5e-16 Score=151.39 Aligned_cols=210 Identities=18% Similarity=0.266 Sum_probs=160.2
Q ss_pred EeccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEE-------EccC-CCCceEEEEecCCCCCcEEEEEEcC
Q 007757 338 TYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIR-------TFST-GKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 338 ~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
.+.||.++|.+++|+| +...|+|||.|.+|.||.+-.+.... .+.. ...+..+.|+|. ..++|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt--A~NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT--APNVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc--chhhHhhccCC
Confidence 4579999999999999 77889999999999999986554332 2222 233445666665 45899999999
Q ss_pred CcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEE
Q 007757 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 488 (590)
..|.+|++.+++.+.++. |...|.+++|+.+|.+|++++.|+.|+|||.+.+..+..-.......-..+.|-.++.++.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999999888887 9999999999999999999999999999999999888776332333456677888888555
Q ss_pred EEE---cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeE
Q 007757 489 AQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 489 s~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~-sgs~dg~I~iwd~~t~~~ 553 (590)
+|- .+.++-+||..+-........+.. +..|.---|.+|.++|+ +|-.|+.|+-|.+..-.+
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDt---SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDT---SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eccccccccceeccCcccccCcceeEEecc---CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 553 467899999766443322222222 23444456788888876 555899999999877654
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=4.9e-15 Score=141.93 Aligned_cols=277 Identities=18% Similarity=0.314 Sum_probs=195.9
Q ss_pred CcceeecccccccccceeecCCCccccC-CCCccCCcceeEEecCCCCCeeEEEEc-------CCCCCEEEEEeCCCcEE
Q 007757 254 DKSTFHGKEETDYQGRSWIAPPKDAKAA-NDHCYIPKRLVHTWSGHTKGVSAIRFF-------PKYGHLILSAGMDTKVK 325 (590)
Q Consensus 254 ~~s~~~~~~~~d~~~r~w~~~~~~~~~~-~~~~~~p~~~v~~l~gH~~~V~~l~fs-------p~~g~~L~sgs~Dg~I~ 325 (590)
+.+.|+ +...|...+.|..|+.....- ....+.++.+...+. -...|...+|. |+ ..++++.+.+.-|+
T Consensus 60 DGSciL-~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~-t~l~a~ssr~~PIh 136 (406)
T KOG2919|consen 60 DGSCIL-SLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPS-TNLFAVSSRDQPIH 136 (406)
T ss_pred CCceEE-eecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCc-cceeeeccccCcee
Confidence 334443 345577788888777665333 334444554443332 23458888887 45 68999999999999
Q ss_pred EEEccCCCeeEEEecc--CCC---ceeEEEEecCCCEEEEEeCCCeEEEEEC-CCCcEEE---EccC-----CCCceEEE
Q 007757 326 IWDVVNSGKCMRTYMG--HSK---AVRDISFCNDGTKFLTASYDKNIKYWDT-ETGQVIR---TFST-----GKIPYVVK 391 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~--h~~---~V~~l~fspdg~~l~s~s~Dg~I~vWd~-~t~~~~~---~~~~-----~~~~~~~~ 391 (590)
+||. -+++....+.+ |.. +..+++|+|||.+|++| +.++|+++|+ +.|+-.. ++.. ...+.+++
T Consensus 137 ~wda-ftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 137 LWDA-FTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeec-cccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 9999 57777766654 433 45689999999998876 5699999999 5554322 2222 23344556
Q ss_pred EecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEeecC
Q 007757 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~~~~~~~~~ 470 (590)
++|.. ...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|+. |-.|..||++....+..-...
T Consensus 215 ~sP~~--~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r 292 (406)
T KOG2919|consen 215 FSPMD--SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALER 292 (406)
T ss_pred ccCCC--CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhh
Confidence 66644 468999999999999999899999999999999999999999999999875 668999999876544332222
Q ss_pred CCC-cccE--EEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC
Q 007757 471 HMH-SMPS--ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 471 ~~~-~i~~--i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
|.. .-.. ..+.|.+++|++|+.||.|++||+...-. ....+..+ ...+..++++|--.++++++...
T Consensus 293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--~~sv~~~~--sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--EVSVTGNY--SDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--cccccccc--cccccceecCcccceeeeccCce
Confidence 332 2223 45578899999999999999999987322 11222222 45567799999988888887653
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=4.9e-14 Score=137.61 Aligned_cols=236 Identities=14% Similarity=0.223 Sum_probs=181.5
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC--CeEEEEECCCCc
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQ 376 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D--g~I~vWd~~t~~ 376 (590)
...+..+.|..+ ..+|..|+.|| .++|+...-.++.. .......|.-+-|+.. +++..+.+ +.+++.++..+.
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence 345777778887 78888888888 57888743334221 1222334666667644 66655554 569999999999
Q ss_pred EEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc---cCCceeEEEEeCCCCEEEEE--eCCC
Q 007757 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---HLGAVNTITFVDSNRRFVTS--SDDK 451 (590)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~---h~~~V~~i~~~p~~~~l~s~--s~Dg 451 (590)
.+..+...+.+..+.++.. .|+++-.+ .|+|||+++.+++.++.. +...+.++.+++.+.+++.- ...|
T Consensus 80 ~ICe~~fpt~IL~VrmNr~-----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK-----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred eEEEEecCCceEEEEEccc-----eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 9999988888888888763 35555544 499999999999888754 44456777777777788753 3468
Q ss_pred cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe-EEEEEccCceeecccccccCcccccceEEEEEcCC
Q 007757 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
.|.|||..+.+.+..+. .|.+++-+++|+++|.+||+++..|+ |++|.+.++..+..+.+ -.....|.+++|+|+
T Consensus 154 dV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR---G~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR---GTYPVSIYSLSFSPD 229 (391)
T ss_pred eEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC---CceeeEEEEEEECCC
Confidence 99999999998888887 69999999999999999999999987 79999998877755443 233567889999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 007757 531 GRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 531 g~~l~sgs~dg~I~iwd~~ 549 (590)
+++|++.+..++|+||.+.
T Consensus 230 s~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCeEEEecCCCeEEEEEec
Confidence 9999999999999999874
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.6e-15 Score=147.13 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=150.4
Q ss_pred eEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 007757 388 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 388 ~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~ 467 (590)
.++++..++ ..+++|+.||++|+|+..+...+.....|.+.|.++.|+|+++.|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~g---s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDG---SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCC---CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 566776654 579999999999999988888888888999999999999999999999999 8999999998766665
Q ss_pred e-cCCCCcccEEEEcCCC---CE--EEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC
Q 007757 468 S-EPHMHSMPSISLHPNT---NW--LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 468 ~-~~~~~~i~~i~~sp~g---~~--l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
. ......+..+.|+.++ .+ ++.....+.|+.|++.....-...+..+.......|.+++.|++|++++.|+.+|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 4 2334456677887766 33 3333344667777764332211111111111124578899999999999999999
Q ss_pred cEEEEeCCCCeEEEEEe-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 542 KCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 542 ~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
.|.|++..+.++++.++ +|...|+.+.|+| +.+++++.+.|..+.|
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAV 350 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeE
Confidence 99999999999887664 7999999999999 6778888888877665
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=157.57 Aligned_cols=243 Identities=16% Similarity=0.236 Sum_probs=181.9
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
..++.+++||...|+|++|+.+ |++++||+.|..|.||+-...+.+ . ..|...|.|+.|+|-...|++|+. ...-
T Consensus 43 G~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~L--k-YSH~D~IQCMsFNP~~h~LasCsL-sdFg 117 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGIL--K-YSHNDAIQCMSFNPITHQLASCSL-SDFG 117 (1081)
T ss_pred cccccccccccceEEEEEEccC-CceeccCCCceeEEEeccccccee--e-eccCCeeeEeecCchHHHhhhcch-hhcc
Confidence 3567899999999999999999 999999999999999987433322 2 259999999999999899999986 4567
Q ss_pred EEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc---ccCCceeEEEEeCCC----
Q 007757 369 YWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAVNTITFVDSN---- 441 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~---~h~~~V~~i~~~p~~---- 441 (590)
+|..+..... +......++++++..+ +.+++.|..+|+|.+-+- +++....+. +...+|.+|+|+|..
T Consensus 118 lWS~~qK~V~---K~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~ 192 (1081)
T KOG1538|consen 118 LWSPEQKSVS---KHKSSSRIICCSWTND-GQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGR 192 (1081)
T ss_pred ccChhhhhHH---hhhhheeEEEeeecCC-CcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCc
Confidence 8877643322 2223344555555543 479999999999999854 343333333 467899999999863
Q ss_pred -CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccccc
Q 007757 442 -RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 442 -~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
..+++.....++.++.+.....-+.. .......|+.+.++|.+++.|+.|+.+.+|.-. +..+.... . ...
T Consensus 193 ~di~aV~DW~qTLSFy~LsG~~Igk~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg---~--~D~ 264 (1081)
T KOG1538|consen 193 NDILAVADWGQTLSFYQLSGKQIGKDR--ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVG---E--QDS 264 (1081)
T ss_pred cceEEEEeccceeEEEEecceeecccc--cCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeecc---c--cce
Confidence 46778888888888887533222111 234456789999999999999999999999643 33332222 2 257
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
+|..++..|++++++.|+.||+|-.|++-
T Consensus 265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 265 WIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 89999999999999999999999999863
No 192
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=2.1e-15 Score=142.40 Aligned_cols=215 Identities=18% Similarity=0.279 Sum_probs=169.3
Q ss_pred CccCCcceeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec-----cCCCceeEEEEec--CC
Q 007757 284 HCYIPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-----GHSKAVRDISFCN--DG 355 (590)
Q Consensus 284 ~~~~p~~~v~~l~-gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-----~h~~~V~~l~fsp--dg 355 (590)
-.+.|.+++..|. .|-+.|.||.|.|+ +..|++-. |..|.+|++.+..+.+..+. +|....++-+|+| +|
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 4566778888887 67779999999998 66666655 88999999965544343332 3566788889999 88
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeE
Q 007757 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNT 434 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~ 434 (590)
+.+++.+ |+++..||+++..+...+...+...+..+..++.++.+|++|+.||.|++||.|.- .+++++.+|...|.+
T Consensus 185 nqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 185 NQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred ceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 8888775 79999999999999999888777777777777788899999999999999999864 688999999999999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCc-----------------------------EEEEeecCCCCcccEEEEcCCC
Q 007757 435 ITFVDSN-RRFVTSSDDKSLRVWEFGIPV-----------------------------VIKYISEPHMHSMPSISLHPNT 484 (590)
Q Consensus 435 i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~-----------------------------~~~~~~~~~~~~i~~i~~sp~g 484 (590)
+.|+|.. ..+++++.|..|.+|....-. .+..+ ..|..+|.+++|+.-.
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-dehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-DEHEDSVYALAWSSAD 342 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc-cccccceEEEeeccCC
Confidence 9999864 467899999999999753211 01112 3477889999998766
Q ss_pred CE-EEEEEcCCeEEEEEcc
Q 007757 485 NW-LAAQSLDNQILIYSTR 502 (590)
Q Consensus 485 ~~-l~s~s~dg~I~iwd~~ 502 (590)
.+ ||+-+.||.+.|=.+.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 64 6677899999886543
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=7.7e-15 Score=140.60 Aligned_cols=247 Identities=19% Similarity=0.260 Sum_probs=187.2
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC--eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
+.|.---.+|+|.+|+++ +..++.+.....|.||...... +...++..|...|++|+|+|..+.|++|+.|..-+||
T Consensus 4 ~~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 344445678999999999 9999999999999999884333 6788999999999999999999999999999999999
Q ss_pred ECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
....+.. -+....+..+..+++++.|+|.++.|++||..
T Consensus 83 ~~~~~~~-----------------------------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 83 TQPSGGT-----------------------------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred ccCCCCe-----------------------------------------eccceeEEEeccceeeEeecCcCceEEeccCc
Confidence 7632110 11223344678899999999999999999999
Q ss_pred CcEEEEECCCCcE---EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee--------ecccccc-----c
Q 007757 451 KSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ--------LNKKKRF-----A 514 (590)
Q Consensus 451 g~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~--------~~~~~~~-----~ 514 (590)
..|.||-+..... .+.+..+....|.++.|||++-+|++|+.|+..++|+.--+.. ......| .
T Consensus 122 r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 122 RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred cEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 9999998865543 2455667888999999999999999999999999997421100 0000000 0
Q ss_pred CcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEecCCCCEEEEEEcCCCCCEEEEEeCC
Q 007757 515 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~-~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
.....+++..+.|+|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-. + ..++.+|.|
T Consensus 202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is-e-~~vv~ag~~ 269 (361)
T KOG1523|consen 202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS-E-NSVVAAGYD 269 (361)
T ss_pred hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec-C-CceeecCCC
Confidence 11236789999999999999999999999999976654 3444444446777888865 2 345555555
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=6.5e-16 Score=153.14 Aligned_cols=198 Identities=16% Similarity=0.314 Sum_probs=159.4
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEcc
Q 007757 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 303 ~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
.+++|+.+ |..|++|+.||++|||+. .....+.....|...|.++.|+|||++|++.+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~-Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEW-PSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEec-CcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 67899999 899999999999999998 5667777788899999999999999999999999 99999999997776665
Q ss_pred CCCC---ceEEEEecCCCCCcEEEEEE--cCCcEEEEECCCCce-----EEEEcccCCceeEEEEeCCCCEEEEEeCCCc
Q 007757 383 TGKI---PYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEI-----TQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 383 ~~~~---~~~~~~~~~~~~~~~lvsg~--~dg~I~vwDl~t~~~-----~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
.... ...+.|..++....+++++. .-+.|+.||+....- ......-...|++++.+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 3322 23455555554444444443 346677776643221 1111123357999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
|.|++....+.+..+...|...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999999999999999999999999999999987754
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=153.59 Aligned_cols=208 Identities=17% Similarity=0.276 Sum_probs=164.3
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-EccCCCCceEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVV 390 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~~ 390 (590)
...|+.++.||.+.|-+- .++.-+.+..|.++|.+-.|+|+|.-|++++.||.|++|.-. |-... ..+....++|+
T Consensus 75 ~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEE
Confidence 467888999999999874 778888899999999999999999999999999999999854 33332 23456778899
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~ 470 (590)
+|.|+.. +++++.+ +.+.+=-+.....+...+.|.+-|.++.|++.++.+++|+.|-..+|||-...... ...+
T Consensus 152 ~W~p~S~--~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf--~S~~ 225 (737)
T KOG1524|consen 152 RWAPNSN--SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF--TSAA 225 (737)
T ss_pred EECCCCC--ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc--cCCh
Confidence 9988765 5555544 56666667666667778899999999999999999999999999999996443322 3347
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007757 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
|..+|++++|.|+ ..++.++. +++++ . ....+.|..++||+||..+++|+..|.+.+-
T Consensus 226 ~ey~ITSva~npd-~~~~v~S~-nt~R~---------------~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 226 EEYAITSVAFNPE-KDYLLWSY-NTARF---------------S-SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hccceeeeeeccc-cceeeeee-eeeee---------------c-CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 9999999999999 56666553 23331 1 1125678889999999999999999987664
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.1e-15 Score=141.97 Aligned_cols=256 Identities=15% Similarity=0.285 Sum_probs=181.1
Q ss_pred cceeEEecCCCCCeeEEEEcCC-CCCEEEEEeCCCcEEEEEccCCCee-EEEeccCC-CceeEEEEecCCCEEEEEeC--
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMDTKVKIWDVVNSGKC-MRTYMGHS-KAVRDISFCNDGTKFLTASY-- 363 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~-~g~~L~sgs~Dg~I~iWd~~~~~~~-~~~~~~h~-~~V~~l~fspdg~~l~s~s~-- 363 (590)
.+.+..|++|...++.++|... +++.+.+|+.||+|++||++...+. ...+..|. .+..|++.+..++.+++|..
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~ 139 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT 139 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence 3477889999999999999884 5899999999999999999544433 33455555 56778887777888887754
Q ss_pred --CCeEEEEECCCCcE-EEEccC--CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc----eEEEEcccCCceeE
Q 007757 364 --DKNIKYWDTETGQV-IRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVNT 434 (590)
Q Consensus 364 --Dg~I~vWd~~t~~~-~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~----~~~~~~~h~~~V~~ 434 (590)
+-.|.+||++..+. +..+.. ...++.++|+|... ++|++|+.||.|.+||+.... ++.++ .|...|.+
T Consensus 140 ~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p--nlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~ 216 (376)
T KOG1188|consen 140 RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP--NLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHL 216 (376)
T ss_pred cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC--CeEEeecccceEEeeecCCCcchhhHHHhh-cccceeee
Confidence 67899999998776 665544 45567788888655 899999999999999997652 23333 47788999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEeecCCCC-----------cccEEEEcCCCCEEEEEEc-CCeEEEEEc
Q 007757 435 ITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-----------SMPSISLHPNTNWLAAQSL-DNQILIYST 501 (590)
Q Consensus 435 i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-----------~i~~i~~sp~g~~l~s~s~-dg~I~iwd~ 501 (590)
+.|...+ +.+.+-+...+..+|+++.+.....+..+... .+.......+...+++++. -|...++-+
T Consensus 217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~ 296 (376)
T KOG1188|consen 217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL 296 (376)
T ss_pred eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence 9999776 46888888999999999877654444332110 1111111223445555554 455555543
Q ss_pred ---cCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 502 ---RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 502 ---~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.++........+.++. ...|.++.|...+.++++|+.||.|.+|..
T Consensus 297 ~~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 3334444444555532 445667888888999999999999999985
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=2.3e-14 Score=135.49 Aligned_cols=240 Identities=15% Similarity=0.235 Sum_probs=172.9
Q ss_pred CCCCCeeEEEEcCCC----CCEEEEEeCCCcEEEEEccCCCeeE---EE-----eccCCCceeEEEEec-CCCEEEEEeC
Q 007757 297 GHTKGVSAIRFFPKY----GHLILSAGMDTKVKIWDVVNSGKCM---RT-----YMGHSKAVRDISFCN-DGTKFLTASY 363 (590)
Q Consensus 297 gH~~~V~~l~fsp~~----g~~L~sgs~Dg~I~iWd~~~~~~~~---~~-----~~~h~~~V~~l~fsp-dg~~l~s~s~ 363 (590)
.|.-+++.+.|.|+. ..+|||++ ..++||.+..+...+ .. -..+..++++..|+. +.++|.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 688899999999983 24666655 479999985222111 11 124677899999998 7889999999
Q ss_pred CCeEEEEECCCCcE----EEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce---EEEEcccCCceeEEE
Q 007757 364 DKNIKYWDTETGQV----IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---TQEYDQHLGAVNTIT 436 (590)
Q Consensus 364 Dg~I~vWd~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~---~~~~~~h~~~V~~i~ 436 (590)
|-+..|||++++.. .+.+.+.+.++-++|.. ....+|++.+.||.|++||+|..+. +.+-.....+...++
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~--~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK--GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEecc--CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 99999999999733 23344556666677766 4458999999999999999998653 222223356788899
Q ss_pred EeCCC-CEEEEEeC-CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccc
Q 007757 437 FVDSN-RRFVTSSD-DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 437 ~~p~~-~~l~s~s~-Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
|++.. +++++-.. ...|.|.|++.+.....-...|...|..|+|.|. ...|++++.|.++.+||+............
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 98754 45555443 4579999999887665555679999999999996 568999999999999999765431111111
Q ss_pred cCcccccceEEEEEcC-CCCEEEEEeCC
Q 007757 514 AGHIVAGYACQVNFSP-DGRFVMSGDGE 540 (590)
Q Consensus 514 ~~~~~~~~v~~v~~sp-dg~~l~sgs~d 540 (590)
-.....+.|..+.|++ .+.+|+.+...
T Consensus 330 lay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 330 LAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhhccceeeeeeecccCCCEEEEEecC
Confidence 1122356788999996 56677776543
No 198
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.4e-13 Score=145.32 Aligned_cols=235 Identities=12% Similarity=0.109 Sum_probs=162.0
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC---CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.+||. ++...+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++...............|+|++.
T Consensus 179 ~~l~~~d~--dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDY--DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcC--CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC-
Confidence 36888887 34444555567778999999999999987653 3579999999887554433333334567777653
Q ss_pred CcEEEEEEcCC--cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeecCCCC
Q 007757 399 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
.++++.+.+| .|++||+.+++..+. ..+...+....|+|+|+.|+.++.+ + .|+++|+..+... .+.. ...
T Consensus 256 -~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~ 331 (429)
T PRK03629 256 -KLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGS 331 (429)
T ss_pred -EEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCC
Confidence 4555555555 599999998876544 3444567889999999999877764 3 4555566655433 3322 333
Q ss_pred cccEEEEcCCCCEEEEEEcC---CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCc---EEEEe
Q 007757 474 SMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK---CWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~---I~iwd 547 (590)
......|+|+|++|+..+.+ ..|.+||+.++.... +. .. .......|+|||++|+.++.++. +.+++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt---~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LT---DT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eC---CC---CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 45678999999999887654 358889987654321 11 11 11234789999999998887764 67777
Q ss_pred CCCCeEEEEEecCCCCEEEEEEcC
Q 007757 548 WKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+ ++.....+.+|.+.+...+|+|
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCC
Confidence 6 5666677778888899999998
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=4.6e-15 Score=138.52 Aligned_cols=276 Identities=17% Similarity=0.221 Sum_probs=184.6
Q ss_pred cccccccccceeecCCCccccCCCCccCCcceeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEE
Q 007757 260 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT 338 (590)
Q Consensus 260 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~-gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~ 338 (590)
.....+.++|. ..........-|++...+.+..|+ .|+..|+.+.--|+ ..|.+-+.|+.+.+|++. ....+
T Consensus 18 ~s~~fqa~~rL--~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ia-~s~~i-- 90 (323)
T KOG0322|consen 18 TSVLFQANERL--MSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWTIA-YSAFI-- 90 (323)
T ss_pred eehhhccchhh--hcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEEEcc-CcceE--
Confidence 33444555553 333333445568888888888999 67889999999986 568889999999999993 33222
Q ss_pred eccCCCceeEEEEecC-----CC----EEEEEeCCC-eEEEEECCCCcEEEEcc---CCCCceEEEEe--cCCCCCcEEE
Q 007757 339 YMGHSKAVRDISFCND-----GT----KFLTASYDK-NIKYWDTETGQVIRTFS---TGKIPYVVKLN--PDDDKQNILL 403 (590)
Q Consensus 339 ~~~h~~~V~~l~fspd-----g~----~l~s~s~Dg-~I~vWd~~t~~~~~~~~---~~~~~~~~~~~--~~~~~~~~lv 403 (590)
.-|+-.++++.|.+. ++ .++.-+... .+.+-|......++... ..+....+++. .......+++
T Consensus 91 -~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 91 -SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred -EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 224445556666542 11 111111100 01122221111121111 12222333333 3334456788
Q ss_pred EEEcCCcEEEEECCCCceE----------EEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc---EEEEeecC
Q 007757 404 AGMSDKKIVQWDMNTKEIT----------QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEP 470 (590)
Q Consensus 404 sg~~dg~I~vwDl~t~~~~----------~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~---~~~~~~~~ 470 (590)
+|..+|.+.+||+.++..+ ..+..|..+|.++.+.+.-..=++|+.+..+..|.+.... .+......
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 8999999999999997433 3345689999999999877777888888899999886431 11111122
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
....+..+.+-|+++.+|+++.|+.|++|+.++...+ ..++.| ...+.+++|+|+..++++++.|++|.+|++
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL---AVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL---AVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCch---hhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 4456888999999999999999999999999886555 455556 467889999999999999999999999986
No 200
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1e-13 Score=141.86 Aligned_cols=277 Identities=13% Similarity=0.147 Sum_probs=202.4
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccC--CCceeEEEEecCCCEEEEEeCCCeEEEEECCC
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTET 374 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h--~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t 374 (590)
+|...-+.|..+|++..++++|..--.|++||+. .-. ..|.-| ...|.-.-++-|-..++.-..|++|-+....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydla-nLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLA-NLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcc-cce--eeeeecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 6778889999999955567788899999999993 221 222233 2334444455555566666677887765432
Q ss_pred CcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007757 375 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
| ....+..+.....++++.... -|++++....|+-+++..|+.+..+....+.+++|..++...+|++|+.+|.|-
T Consensus 125 G-~hy~~RIP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 125 G-RHYRTRIPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred C-eeeeeecCcCCccccccCCCc---cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence 1 222223333344444443322 266666677899999999999999988889999999999999999999999999
Q ss_pred EEECCCCcEEEEeecCC----------CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEE
Q 007757 455 VWEFGIPVVIKYISEPH----------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~----------~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
+||.+....+..+.... ...|+++.|+.+|-.+++|+.+|.|.|||++...++. ...|.....|..
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~----~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL----VKDHGYELPIKK 276 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee----ecccCCccceee
Confidence 99998876665553221 1248999999999999999999999999999876553 344555677888
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 525 VNFSPD--GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 525 v~~spd--g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
+.|.+. +..|++. ....++|||-.+|+....+.... .+..+|+.| ++.+++++-.++.+..
T Consensus 277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p-~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVP-GSGMFFTANESSKMHT 339 (703)
T ss_pred ecccccCCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeec-CCceEEEecCCCccee
Confidence 999775 4455555 35689999999999998887544 489999999 6778888887776543
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.7e-12 Score=126.91 Aligned_cols=251 Identities=14% Similarity=0.233 Sum_probs=179.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCC--cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE
Q 007757 302 VSAIRFFPKYGHLILSAGMDT--KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg--~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
|.-+-|+. .++|..+.+. .+++.++ ..+..+..+. ....|.+|.++.+ +|+++-.+ .|.|||+++.+.+.
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~-Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHF-KKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEc-ccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeeh
Confidence 44555653 4666655543 4889988 4555555443 4567999999754 67766654 49999999999999
Q ss_pred EccCC--CCceEEEEecCCCCCcEEEEEE-cCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCc-EEE
Q 007757 380 TFSTG--KIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS-LRV 455 (590)
Q Consensus 380 ~~~~~--~~~~~~~~~~~~~~~~~lvsg~-~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~-I~i 455 (590)
++... +....++++++..+..+.+=++ ..|.|++||+.+-+.+..+..|.+++.+++|+++|.+|+++|+.|+ |||
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 98765 4455778887765433333333 3589999999999999999999999999999999999999999997 799
Q ss_pred EECCCCcEEEEeecCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc-----cc--------ccC----c-
Q 007757 456 WEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK-----KR--------FAG----H- 516 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~-----~~--------~~~----~- 516 (590)
|.+..+..+..+..+. ...|.+++|+|++.+|++.+..++|++|.+......... .. ... .
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V 280 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQV 280 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhh
Confidence 9999999888886543 345889999999999999999999999988653211000 00 000 0
Q ss_pred --------------cc-cc--ceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEecC
Q 007757 517 --------------IV-AG--YACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKVFRTLKCH 560 (590)
Q Consensus 517 --------------~~-~~--~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--~~~~~~l~~h 560 (590)
.. .+ .++.+.-.+....+..++.||.++.|.+.. |.....++.|
T Consensus 281 ~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 281 SSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred hhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 00 01 222232234778899999999999998753 4444445544
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=7.7e-14 Score=136.48 Aligned_cols=297 Identities=14% Similarity=0.175 Sum_probs=214.0
Q ss_pred HhhccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEE
Q 007757 239 EEKGNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSA 318 (590)
Q Consensus 239 ~~~~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sg 318 (590)
.-.++-|.+..+.+.....|+++++.|.-+|.|.....-. .-.|+.+...=..|...|.|++|... ...|++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~------~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG 123 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV------RKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSG 123 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh------hcCCCCceeccCccccceEEEEEccC-CeeEecC
Confidence 3445668888888888899999999999999995422111 11222222222346789999999987 8899999
Q ss_pred eCCCcEEEEEccCCCeeEEEecc--CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc----EEEEccCCCCceEEEE
Q 007757 319 GMDTKVKIWDVVNSGKCMRTYMG--HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKL 392 (590)
Q Consensus 319 s~Dg~I~iWd~~~~~~~~~~~~~--h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~----~~~~~~~~~~~~~~~~ 392 (590)
+.+++|.+.|+ .+.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+... ++.....+...+.+.|
T Consensus 124 ~~~~~VI~HDi-Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 124 ERWGTVIKHDI-ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred CCcceeEeeec-ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 99999999999 56666665532 23489999999999999999999999999997654 3333444556667778
Q ss_pred ecCCCCCcEEEEEEcCCcEEEEECCCCc-eEEEEc------ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 007757 393 NPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYD------QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 465 (590)
Q Consensus 393 ~~~~~~~~~lvsg~~dg~I~vwDl~t~~-~~~~~~------~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~ 465 (590)
+|... .+|++.+..+.+-+||++... .+..+. .....-.++.|+|+|+.|++.-....-.+||+-+..+..
T Consensus 203 ~P~~P--~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 203 HPETP--ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV 280 (609)
T ss_pred cCCCc--eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence 77654 789999999999999998653 222221 112233678999999999988777777788987755443
Q ss_pred EeecCC------CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce--------------------eecccccccCcccc
Q 007757 466 YISEPH------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--------------------QLNKKKRFAGHIVA 519 (590)
Q Consensus 466 ~~~~~~------~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~--------------------~~~~~~~~~~~~~~ 519 (590)
...... ...|.+++|..+- .+++|+.+-.|++|.+.... .-..+..++|| .
T Consensus 281 ~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH--R 357 (609)
T KOG4227|consen 281 LKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH--R 357 (609)
T ss_pred EeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc--c
Confidence 332211 1236677777554 48999999999999874311 11123445666 4
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
..+..+.|+|...+|++.+-...++||.-
T Consensus 358 Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 358 SVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccccceeecCCcceEeccchhhheecccc
Confidence 66788999999999999999999999963
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.3e-13 Score=147.93 Aligned_cols=277 Identities=17% Similarity=0.257 Sum_probs=191.9
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCC---CEEEEEeCCCeEEEEECCCCcEEE
Q 007757 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG---TKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 303 ~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg---~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
..-.|+++ ++.++.+. +..|.||.+ .++.++..+.+|..+++.+.+.|.. .++++++.||.|++||...+..++
T Consensus 20 ~~avfSnD-~k~l~~~~-~~~V~VyS~-~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSND-AKFLFLCT-GNFVKVYST-ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccC-CcEEEEee-CCEEEEEec-chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 34457888 66666655 468999999 7999999999999999999999843 467899999999999999999999
Q ss_pred EccCCCCceEEEEecCCCCCc-EEEEEEcCCcE------------EEEECCCC--ceEEEEcccCCceeEEEEeCCCCEE
Q 007757 380 TFSTGKIPYVVKLNPDDDKQN-ILLAGMSDKKI------------VQWDMNTK--EITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~-~lvsg~~dg~I------------~vwDl~t~--~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
++.....+..+.+.+..-... .+..+..+..+ +-+.+.+- .....+..|.. -.+|.+++.+.+.
T Consensus 97 t~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 97 TFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFK 175 (792)
T ss_pred EEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEE
Confidence 998877766655533211111 12122222211 11111110 00011112222 3567777777665
Q ss_pred EEEeCCCcEEEEECCCCcE---EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC-ceeecccccccCccccc
Q 007757 445 VTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~ 520 (590)
...- +..+.+|....... ...+...|...+++.++||++++++++..||+|.+|.--. ...-.....+ |-+..
T Consensus 176 ~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l--HWH~~ 252 (792)
T KOG1963|consen 176 GIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL--HWHHD 252 (792)
T ss_pred EEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE--Eeccc
Confidence 5554 56688898876441 1112234566689999999999999999999999996433 1111112223 33356
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
.|.+++|+++|.+|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++| ++.+.+.+..|..|.+
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHL 318 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence 78899999999999999999999999999988 445566778999999999 5667777777888865
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=1e-12 Score=136.64 Aligned_cols=276 Identities=18% Similarity=0.211 Sum_probs=179.4
Q ss_pred CCEE-EEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEE
Q 007757 312 GHLI-LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 390 (590)
Q Consensus 312 g~~L-~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~ 390 (590)
++++ ++-..++.|.|.|. .+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++..+..+..+
T Consensus 5 ~~l~~V~~~~~~~v~viD~-~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDG-ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEET-TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred ccEEEEEecCCCEEEEEEC-CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 3455 45566899999998 678888888765554455789999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEccc-------CCceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCc
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-------LGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPV 462 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h-------~~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~ 462 (590)
.+++++. .++++....+.+.++|.++.+++..+... ...+..|..++....++..-. .+.|.+.|+....
T Consensus 84 ~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 84 AVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9998653 45555567999999999999998887542 346778888888886666655 4888888887654
Q ss_pred EEEEeecCCCCcccEEEEcCCCCEEEEE-EcCCeEEEEEccCceeeccccc----------------c-----cCcc---
Q 007757 463 VIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKR----------------F-----AGHI--- 517 (590)
Q Consensus 463 ~~~~~~~~~~~~i~~i~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~~----------------~-----~~~~--- 517 (590)
.+...............|+|+++|++++ ..++.|.++|..+......... + ..+.
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 4432222344556788999999988775 4457788888766543321100 0 0000
Q ss_pred -------------------------cccceEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCeEEEEEecCC-CCEEEE
Q 007757 518 -------------------------VAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHE-GVCIGC 567 (590)
Q Consensus 518 -------------------------~~~~v~~v~~spdg~~l~sg----s~dg~I~iwd~~t~~~~~~l~~h~-~~V~~v 567 (590)
..+.-.-+..+|++++|++. ...+.|.++|..+.+.+.++.... ..+..+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 00111236779999999987 456899999999998888775332 358999
Q ss_pred EEcCCCCCEEEEEeCCC-cEEEeC
Q 007757 568 EWHPLEQSKVATCGWDG-LIKYWD 590 (590)
Q Consensus 568 ~~sp~~~~~l~s~g~DG-~I~iWD 590 (590)
.|++++....+|.-..+ .|.|||
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEE
T ss_pred EECCCCCEEEEEEecCCCEEEEEE
Confidence 99996555555554444 699886
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=4.4e-15 Score=148.33 Aligned_cols=265 Identities=15% Similarity=0.207 Sum_probs=204.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
..+-..+.++.+ |..|+.|+.-|.|-.+|. .+.++...+. -...|.++.|-.+.++|+++- ...+.|||- .|..+
T Consensus 129 eFGPY~~~ytrn-GrhlllgGrKGHlAa~Dw-~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRN-GRHLLLGGRKGHLAAFDW-VTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTEL 203 (545)
T ss_pred ccCCeeeeecCC-ccEEEecCCccceeeeec-ccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEE
Confidence 445678889988 999999999999999999 5666666654 456799999998888887775 589999995 46777
Q ss_pred EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007757 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
..+.....+.-+.|.|.. .+|++++..|.+..-|+.+|+++..+..-.+.+..++-+|-+..+-+|...|+|.+|.-
T Consensus 204 HClk~~~~v~rLeFLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred eehhhcCchhhhcccchh---heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 777777777777888765 57888899999999999999999999888899999999999999999999999999999
Q ss_pred CCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe
Q 007757 459 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
....++..+. .|.++|.+|++.++|.|+++.+.|..++|||++....+..... ...+..++||..| +|+.+
T Consensus 281 ~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t------p~~a~~ls~Sqkg-lLA~~- 351 (545)
T KOG1272|consen 281 NSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT------PHPASNLSLSQKG-LLALS- 351 (545)
T ss_pred CCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec------CCCcccccccccc-ceeee-
Confidence 8887776665 4999999999999999999999999999999998665443332 1223457888776 34444
Q ss_pred CCCcEEEEe-CCC--CeEEEEEecC--CCCEEEEEEcCCCCCEEEEEe
Q 007757 539 GEGKCWFWD-WKS--CKVFRTLKCH--EGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 539 ~dg~I~iwd-~~t--~~~~~~l~~h--~~~V~~v~~sp~~~~~l~s~g 581 (590)
....|.||. .-. +.....+-.| .++|.++.|.|. ...|-.|-
T Consensus 352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~-EDvLGIGH 398 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY-EDVLGIGH 398 (545)
T ss_pred cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH-HHeeeccc
Confidence 444799994 222 1111112223 358899999994 33444443
No 206
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=1.2e-14 Score=149.73 Aligned_cols=232 Identities=17% Similarity=0.237 Sum_probs=165.1
Q ss_pred EeCCCcEEEEEccCCCeeEEEec---cCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCCCcEE-------EEcc-CCC
Q 007757 318 AGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVI-------RTFS-TGK 385 (590)
Q Consensus 318 gs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~-------~~~~-~~~ 385 (590)
++.-|.|-||++...+++..... -....|+++.|.| |...|++++.||.|++|.+..+..- ..+. +..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 45578999999976665443221 1356799999999 8889999999999999998765322 2222 245
Q ss_pred CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 007757 386 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 465 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~ 465 (590)
.++.+.|+|... ++|++++.|.+|.+||++++.....+.+|.+.|..++|+|+|+.+++.+.||+|++|.-++.....
T Consensus 679 KI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 679 KITSLRFHPLAA--DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred eEEEEEecchhh--hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 567778887654 789999999999999999999999999999999999999999999999999999999987754332
Q ss_pred E-eecCCCCcccEEEEcCCCCEEEEEEcC----CeEEEEEccCceeecccccccCcccccceEEEEEcCCCC-EEEEEeC
Q 007757 466 Y-ISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDG 539 (590)
Q Consensus 466 ~-~~~~~~~~i~~i~~sp~g~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~ 539 (590)
+ -..+....--.|.|.-+|+++++.+.| .+|.+|+...-.. ..+....-. .+..+.--.+.+|.. ++++|-.
T Consensus 757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lD-vaps~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 757 YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLD-VAPSPLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-Ccceeeeec-ccCccccccccCCCceEEEecCC
Confidence 2 222333445568888899999988776 4688888654210 000000000 000111123344544 5678889
Q ss_pred CCcEEEEeCCCCeE
Q 007757 540 EGKCWFWDWKSCKV 553 (590)
Q Consensus 540 dg~I~iwd~~t~~~ 553 (590)
|..|++|.+-...+
T Consensus 835 D~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 835 DRFVNMYEVIYESP 848 (1012)
T ss_pred CceEEEEEecCCCc
Confidence 99999999865443
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.4e-14 Score=145.46 Aligned_cols=218 Identities=23% Similarity=0.407 Sum_probs=163.2
Q ss_pred EEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc--eEEEEecCCCCCcEEEEEEcCCcEEEE
Q 007757 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~dg~I~vw 414 (590)
..+.||.+.|+|+.|+.+|.+|++||.|-.+.|||.-..+.+..+..++.. .++.|.|... ..++++|..|..|++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC-CeEEEeccCcceEEEE
Confidence 457899999999999999999999999999999999999999999888765 5667777654 4789999999999999
Q ss_pred ECCC----------CceEEEEcccCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEee---------cCCCCc
Q 007757 415 DMNT----------KEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHMHS 474 (590)
Q Consensus 415 Dl~t----------~~~~~~~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~---------~~~~~~ 474 (590)
|+.. .+....+..|...|..|+..|++ ..|.+++.||+|+-+|++.+.....-. .+..-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9984 23445566789999999999988 789999999999999998753221110 012234
Q ss_pred ccEEEEcCCC-CEEEEEEcCCeEEEEEccCceee--------cc-------cc-cccCcc-c-----ccc---eEEEEEc
Q 007757 475 MPSISLHPNT-NWLAAQSLDNQILIYSTRERFQL--------NK-------KK-RFAGHI-V-----AGY---ACQVNFS 528 (590)
Q Consensus 475 i~~i~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~--------~~-------~~-~~~~~~-~-----~~~---v~~v~~s 528 (590)
..++.++|.. .+|++|+.|-..++||.+..... .. .. -..+|. . ..+ ++-++|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 6688999864 68999999999999995421110 00 00 011221 0 111 4568899
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 007757 529 PDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
|+|.-|+..-..-.|+++|+..++...
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 999887776666689999998766543
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.6e-13 Score=142.93 Aligned_cols=235 Identities=17% Similarity=0.202 Sum_probs=161.7
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC---CeEEEEECCCCcEEEEccCCCCceEEEEecCCCC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.+||. .+...+.+..+...+.+.+|+|+|+.|+.++.. ..|.+||+.+++...............|++++.
T Consensus 184 ~~l~i~D~--~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADS--DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECC--CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC-
Confidence 35888987 455556666778889999999999999988754 469999999887654433333334566776543
Q ss_pred CcEEEEEEcCC--cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC-CCc--EEEEECCCCcEEEEeecCCCC
Q 007757 399 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKS--LRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg~--I~iwdl~~~~~~~~~~~~~~~ 473 (590)
.++++.+.+| .|++||+.+++.. .+..+.......+|+|+++.|+.++. +|. |+++++..+.... +.. ...
T Consensus 261 -~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~-~g~ 336 (433)
T PRK04922 261 -RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF-QGN 336 (433)
T ss_pred -EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec-CCC
Confidence 4556666655 5999999988754 34455555678899999999887764 444 7777776655333 222 223
Q ss_pred cccEEEEcCCCCEEEEEEcCC---eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC---CCcEEEEe
Q 007757 474 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd 547 (590)
....++|+|+|++|+..+.++ .|.+|++.++... .+. .+. ....+.|+|||++|+..+. .+.|++++
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~----~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGS----LDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCC----CCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 445789999999998876543 5999998765432 111 111 2234789999999877664 34688888
Q ss_pred CCCCeEEEEEecCCCCEEEEEEcC
Q 007757 548 WKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+. +.....+..+.+.+...+|+|
T Consensus 410 ~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCceEEcccCCCCCCCCccCC
Confidence 74 445666666667788888987
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=2.3e-13 Score=149.94 Aligned_cols=254 Identities=18% Similarity=0.271 Sum_probs=177.7
Q ss_pred EEccCCCeeEEEeccCCCceeEEEEecC-CCEEEEEeCCCeEEEEECCCC-------cEEEEcc-CCCCceEEEEecCCC
Q 007757 327 WDVVNSGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG-------QVIRTFS-TGKIPYVVKLNPDDD 397 (590)
Q Consensus 327 Wd~~~~~~~~~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~-------~~~~~~~-~~~~~~~~~~~~~~~ 397 (590)
|+. .|..+..+..|...|..++.++. +.+|+|||.||+|++|++..- +...++. .+....++.++..+
T Consensus 1034 W~p--~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~- 1110 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG- 1110 (1431)
T ss_pred CCc--cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-
Confidence 776 78899999999999999999885 499999999999999998632 3344444 45666677777655
Q ss_pred CCcEEEEEEcCCcEEEEECCCC--c-----eEEEEccc-CCceeEE-EEeC-CCC-EEEEEeCCCcEEEEECCCCcEEEE
Q 007757 398 KQNILLAGMSDKKIVQWDMNTK--E-----ITQEYDQH-LGAVNTI-TFVD-SNR-RFVTSSDDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t~--~-----~~~~~~~h-~~~V~~i-~~~p-~~~-~l~s~s~Dg~I~iwdl~~~~~~~~ 466 (590)
+.+++++.||.|++.++... . .....+.+ .+.+.++ +|.. ... .++.+..-+.|..||++.......
T Consensus 1111 --~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1111 --DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred --CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 56999999999999998752 1 11111222 2333333 3322 223 678888889999999987765544
Q ss_pred eec-CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC---CCCEEEEEe--CC
Q 007757 467 ISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGD--GE 540 (590)
Q Consensus 467 ~~~-~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs--~d 540 (590)
+.. ...+.|++++.+|.+.++++|+..|.+.+||++-+..+.... +.. ...+..+..+| ....+++++ ..
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~---~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPA---RAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc-Ccc---cCCcceEEeeccCCCCceEEEecccCC
Confidence 432 355679999999999999999999999999998765543322 222 24455555554 334555444 57
Q ss_pred CcEEEEeCCCCeEEEEEecCCC-------------------CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 541 GKCWFWDWKSCKVFRTLKCHEG-------------------VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 541 g~I~iwd~~t~~~~~~l~~h~~-------------------~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.|.+|++.+|.+-.++....+ ....+.+.. .+.++++||.|+.|+.||
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeecc
Confidence 8899999999877666653311 122233333 566899999999999998
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=4.8e-12 Score=121.64 Aligned_cols=271 Identities=13% Similarity=0.166 Sum_probs=181.0
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC--ceeEEEEecCCCEEE-EEeCC------CeEEEEEC
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK--AVRDISFCNDGTKFL-TASYD------KNIKYWDT 372 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~--~V~~l~fspdg~~l~-s~s~D------g~I~vWd~ 372 (590)
..+++|+.+ ...++.|..+| .+||++. .-+.......+.. .+.-+-| ..++|+ +|+.+ ..|.|||=
T Consensus 8 ~lsvs~NQD-~ScFava~~~G-friyn~~-P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 8 TLSVSFNQD-HSCFAVATDTG-FRIYNCD-PFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred eeEEEEccC-CceEEEEecCc-eEEEecC-chhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 445899988 66666666555 8999983 3222111111222 2333333 234444 34333 57999998
Q ss_pred CCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC-CCceEEEEcccC--CceeEEEEeCCCCEEEE-Ee
Q 007757 373 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHL--GAVNTITFVDSNRRFVT-SS 448 (590)
Q Consensus 373 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~-t~~~~~~~~~h~--~~V~~i~~~p~~~~l~s-~s 448 (590)
...+++..+.....+..+++..+ .+++ -..+.|++|... ..+.+..+.... ..+.+++-..+...|+. |-
T Consensus 83 ~k~~~i~el~f~~~I~~V~l~r~-----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELSFNSEIKAVKLRRD-----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEEeccceeeEEEcCC-----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 88889999988888888888764 2333 346899999987 445566554332 22333333333334443 34
Q ss_pred CCCcEEEEECCCCcE-EEEeecCCCCcccEEEEcCCCCEEEEEEcCCe-EEEEEccCceeecccccccCcccccceEEEE
Q 007757 449 DDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
.-|+|.|-|+..... ...+...|...|.|++++.+|..+|++|..|+ |+|||..++..+..+.+-.. ...+.+++
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---~A~iy~ia 233 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD---RADIYCIA 233 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---hheEEEEE
Confidence 568999999976554 22334579999999999999999999999997 89999999988766554333 36788999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCe---E---------------------EEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 527 FSPDGRFVMSGDGEGKCWFWDWKSCK---V---------------------FRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~---~---------------------~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
|||++.+|+++|..|+|.||.++... . +..+....+...-++|-. +.+.++..+.
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~-~~nsvi~i~~ 312 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGS-ETNTVIAICA 312 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecC-CCCeEEEEEe
Confidence 99999999999999999999875421 1 122233345566677876 4456666777
Q ss_pred CCcEE
Q 007757 583 DGLIK 587 (590)
Q Consensus 583 DG~I~ 587 (590)
||+-.
T Consensus 313 Dgsy~ 317 (346)
T KOG2111|consen 313 DGSYY 317 (346)
T ss_pred CCcEE
Confidence 87643
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=2.2e-13 Score=138.55 Aligned_cols=216 Identities=16% Similarity=0.258 Sum_probs=150.2
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCcEE-----EEccCCCCceEEEEe--cCCCCCcEEEEEEcCCcEEEEECCCCc
Q 007757 348 DISFCNDGTKFLTASYDKNIKYWDTETGQVI-----RTFSTGKIPYVVKLN--PDDDKQNILLAGMSDKKIVQWDMNTKE 420 (590)
Q Consensus 348 ~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~lvsg~~dg~I~vwDl~t~~ 420 (590)
...++-.|.+|+..- ...+.+|+.+.+..+ +.+-.+..+.|..|. ....++.-+++|-.-|.|.+.|....+
T Consensus 128 ~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~ 206 (636)
T KOG2394|consen 128 NTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFE 206 (636)
T ss_pred eccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhH
Confidence 333344455544332 256777777643211 222233444555552 233344568899999999999987643
Q ss_pred eEEEEc----ccCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCC--------------cE--------------EEEe
Q 007757 421 ITQEYD----QHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIP--------------VV--------------IKYI 467 (590)
Q Consensus 421 ~~~~~~----~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~--------------~~--------------~~~~ 467 (590)
....+. .....|+||.|.|.+ ..|+.+-.+|.+++||.... .. +..+
T Consensus 207 ~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w 286 (636)
T KOG2394|consen 207 VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARW 286 (636)
T ss_pred HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcccee
Confidence 222221 134689999999854 46777788999999975311 00 0011
Q ss_pred ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 468 SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 468 ~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
. .....|..++|+|+|++||+.+.||.++|||..+...+...+.+ -+...|++|||||+||++|+.|--|.||.
T Consensus 287 ~-~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-----FGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 287 H-IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-----FGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred E-eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-----ccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 1 12346888999999999999999999999999876554433333 34467899999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEc
Q 007757 548 WKSCKVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~s 570 (590)
+...+.+..-++|..-|..|+|.
T Consensus 361 f~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred eccceEEEeccccccceeeEeec
Confidence 99999999999999999999998
No 212
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.7e-13 Score=141.05 Aligned_cols=235 Identities=15% Similarity=0.178 Sum_probs=157.7
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC---CeEEEEECCCCcEEEEccCCCCceEEEEecCCCC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.+||. ++...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 176 ~~L~~~D~--dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDA--DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECC--CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC-
Confidence 35666665 555566666788899999999999999887753 459999999987654433333444667777653
Q ss_pred CcEEEEEEcCCcEEEE--ECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC-CCcEEEEEC--CCCcEEEEeecCCCC
Q 007757 399 QNILLAGMSDKKIVQW--DMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEF--GIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg~I~vw--Dl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl--~~~~~~~~~~~~~~~ 473 (590)
.++++.+.++...+| |+.++. ...+..+.+.+....|+|+|+.|+.++. ++...||.+ ..... ..+.. ...
T Consensus 253 -~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~-~g~ 328 (427)
T PRK02889 253 -TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF-TGS 328 (427)
T ss_pred -EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec-CCC
Confidence 455566777765555 555554 3445555556677899999999887664 455666654 44332 22221 223
Q ss_pred cccEEEEcCCCCEEEEEEcCC---eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC---cEEEEe
Q 007757 474 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd 547 (590)
......|+|+|++|+..+.++ .|.+||+.++.... +. .+ .....+.|+|||++|+..+.++ .+++.+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt--~~----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT--DT----TRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc--CC----CCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 344678999999999877654 59999987654321 11 11 1224579999999988776543 366666
Q ss_pred CCCCeEEEEEecCCCCEEEEEEcC
Q 007757 548 WKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+ ++.....+..+.+.+...+|+|
T Consensus 402 ~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 402 S-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred C-CCCceEEeecCCCCCCCCccCC
Confidence 6 5666777777778888899988
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.7e-13 Score=132.35 Aligned_cols=263 Identities=14% Similarity=0.168 Sum_probs=189.5
Q ss_pred CCCeeEEEEcCCCC-CEEEEEeCCCcEEEEEccCCCeeEE------EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 299 TKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVVNSGKCMR------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 299 ~~~V~~l~fsp~~g-~~L~sgs~Dg~I~iWd~~~~~~~~~------~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
...|+.++|.-++. ..|..++.+..+..+.+ ....+.. +.....++|..+... ...|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~-~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVI-EEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccc-cCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 34577777876533 34445557777777776 3333332 334456677777765 23788888999999999
Q ss_pred CCCCc----EEEEccCCCCceEEEEecCCCCCcEEEEEEcC--CcEEEEECCCCceEEEEccc---------CCceeEEE
Q 007757 372 TETGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQH---------LGAVNTIT 436 (590)
Q Consensus 372 ~~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~vwDl~t~~~~~~~~~h---------~~~V~~i~ 436 (590)
.+.+. .+..+..+.....+.-.+ ...+++++|+.. ..+.+||+...+.+.+-+.- .-.++++.
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCC--CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 88543 333444454444444444 344788889998 89999999988665553321 23468899
Q ss_pred EeCC--CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccccc
Q 007757 437 FVDS--NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 437 ~~p~--~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
|.+. ...|++++.-+.|++||.+.+........-..++|+++...|++++++++..-+.+..||++.+..+.. .+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--GLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc--ccC
Confidence 9987 889999999999999999876443333344678999999999999999999999999999998766543 233
Q ss_pred CcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcC
Q 007757 515 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+. .+.+.++..+|.+++|++++-|..|+|+|+++.+++...-. ...++++.+.+
T Consensus 288 g~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 288 GI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred Cc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 33 56678899999999999999999999999999777665432 23356666654
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3e-12 Score=137.42 Aligned_cols=234 Identities=17% Similarity=0.167 Sum_probs=160.6
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC---CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.+||. .+...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++...............|+|++.
T Consensus 182 ~~l~~~d~--dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQ--DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECC--CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC-
Confidence 36778886 55566677788889999999999999988764 4689999999887654433333444566776543
Q ss_pred CcEEEEEEcCCc--EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCC
Q 007757 399 QNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg~--I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
.++++.+.++. |++||+.++... .+..+........|+|+++.|+.++. +| .|++||+...... .+.. ...
T Consensus 259 -~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-~~~ 334 (435)
T PRK05137 259 -KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-GGG 334 (435)
T ss_pred -EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-CCC
Confidence 55666666554 888899887654 45556666778999999999887764 33 6888888765443 3332 234
Q ss_pred cccEEEEcCCCCEEEEEEcC---CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC------CcEE
Q 007757 474 SMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE------GKCW 544 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d------g~I~ 544 (590)
.+....|+|+|++|+..+.+ ..|.+|++...... .+. .+ ..+..+.|+|||++|+..+.+ ..|+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt--~~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT--SG----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc--CC----CCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 56678899999999887654 35888887554321 111 11 123458999999998765432 3688
Q ss_pred EEeCCCCeEEEEEecCCCCEEEEEEcC
Q 007757 545 FWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 545 iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
++|+..+.. ..+. ..+.+...+|+|
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCC
Confidence 888876554 3444 344567788887
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=1.9e-13 Score=131.38 Aligned_cols=273 Identities=15% Similarity=0.251 Sum_probs=184.2
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEE-EEEeCCCeEEEEECCCCcEE
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~t~~~~ 378 (590)
..|.-|.|.-+....|.....++.|.+|++ ...+-...+.....++..++|+|+|+.| .+...+-.|.||.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl-~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSL-VQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEe-ecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 457788899886677777888999999999 5666677777888899999999999654 56677999999999998877
Q ss_pred EEccCCCCceEEEEecCCCCCcEEEEEEcCCc---EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007757 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK---IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~---I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..-...+....++|++++. +.+..+.-.. +.+.....-.++..+....-..+.|.|+|+|+.|++
T Consensus 128 ~~~~pK~~~kg~~f~~dg~---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV--------- 195 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQ---FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV--------- 195 (447)
T ss_pred EecccccCceeEEECCCCc---eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------
Confidence 6655556667788888653 4444433211 222222233455556556667789999999977654
Q ss_pred EECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc-------------------------
Q 007757 456 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK------------------------- 510 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~------------------------- 510 (590)
||---.-.+... ...-.+..+.|+|.+++|++|+.|+.+++.+--+-.....+
T Consensus 196 wd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 196 WDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred ecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 553211111111 13346788999999999999999999887542211100000
Q ss_pred --------------------------------cccc---C-cccccceEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCe
Q 007757 511 --------------------------------KRFA---G-HIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWKSCK 552 (590)
Q Consensus 511 --------------------------------~~~~---~-~~~~~~v~~v~~spdg~~l~sgs~--dg~I~iwd~~t~~ 552 (590)
..++ . ......+..++||+|..|+++-.+ -..+.+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 0000 0 000123456899999999998764 3679999998887
Q ss_pred EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 553 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 553 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+...+. ...+|....|+| +...|+.|.....+.+|
T Consensus 354 l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 354 LHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFW 388 (447)
T ss_pred hhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEE
Confidence 766554 456799999999 45556666556678877
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.8e-12 Score=123.31 Aligned_cols=281 Identities=14% Similarity=0.162 Sum_probs=175.1
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc-CCCceeEEEEecC-CCEEEEEeCCCeEEEEECCCC---
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG--- 375 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~--- 375 (590)
.+..++|++. -..++++..|-.|++|+-. . .+...++. ....|+|++|-|. +..|+.|+. +-|++|.....
T Consensus 100 dlr~~aWhqH-~~~fava~nddvVriy~ks-s-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 100 DLRGVAWHQH-IIAFAVATNDDVVRIYDKS-S-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred ceeeEeechh-hhhhhhhccCcEEEEeccC-C-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 3667889886 6678899999999999973 3 44444443 4567999999994 455666665 77999976422
Q ss_pred -cE--------EEEccC--CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE
Q 007757 376 -QV--------IRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 376 -~~--------~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
.. ...++. +..+..+.+.++ ...++-+.-.+..|.+||..++..+.....-.+.++-+.|+|++.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~d--gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNED--GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCC--CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 112222 233445555554 33444444567899999999998776665567889999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc--------------
Q 007757 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK-------------- 510 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~-------------- 510 (590)
++++-|+..++|............. ..+.|...+|+|.|.+|+..+. |.-++|.+.-.......
T Consensus 254 faAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 9999999999996544333322322 3448999999999998766553 33344443211110000
Q ss_pred ----ccccC-cccccceEEEEEcCCCCEEEEEeCCC--------cEEEEeCCCCeEEEEEec---CCCCEEEEEEcC--C
Q 007757 511 ----KRFAG-HIVAGYACQVNFSPDGRFVMSGDGEG--------KCWFWDWKSCKVFRTLKC---HEGVCIGCEWHP--L 572 (590)
Q Consensus 511 ----~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg--------~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp--~ 572 (590)
....+ ....+.+.+++|.|.|.+|++.-..+ .|.+||.+..-.+..... ......-++|+| .
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n 411 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKN 411 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeeccc
Confidence 00111 11245567899999999999875443 467788765544433211 011123344444 3
Q ss_pred CCCEEEEEeCCCcEEEe
Q 007757 573 EQSKVATCGWDGLIKYW 589 (590)
Q Consensus 573 ~~~~l~s~g~DG~I~iW 589 (590)
++.+|..|=.-|.|.-|
T Consensus 412 ~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRY 428 (445)
T ss_pred CCcEEEEEeccCceEee
Confidence 44455555556666544
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=5.1e-12 Score=121.43 Aligned_cols=178 Identities=16% Similarity=0.314 Sum_probs=140.4
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC-CCcEEEEccCCC-CceEEEEecCCCCC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFSTGK-IPYVVKLNPDDDKQ 399 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~-t~~~~~~~~~~~-~~~~~~~~~~~~~~ 399 (590)
..|.|||= ...+++.++. ...+|.+|.+.++ .|++.- .+.|.||... ..+.++.+.... +...+++.+.....
T Consensus 75 NkviIWDD-~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDD-LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEec-ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 47999995 4666776664 6778999999865 565554 5899999987 556666665544 33355556655543
Q ss_pred cEEEEEEcCCcEEEEECCCCce--EEEEcccCCceeEEEEeCCCCEEEEEeCCCc-EEEEECCCCcEEEEeecCC-CCcc
Q 007757 400 NILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDSNRRFVTSSDDKS-LRVWEFGIPVVIKYISEPH-MHSM 475 (590)
Q Consensus 400 ~~lvsg~~dg~I~vwDl~t~~~--~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~-I~iwdl~~~~~~~~~~~~~-~~~i 475 (590)
-+..-|-.-|.|++-|+...+. ...+..|.+.|.|++.+-+|..++++|..|+ |||||..++..+..+..+. ...|
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 3333456679999999987655 4778899999999999999999999999997 7999999999998887654 3469
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 476 PSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 476 ~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
.+|+|+|+..+|+++|..|+|.||.++..
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998763
No 218
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.53 E-value=5e-13 Score=135.72 Aligned_cols=262 Identities=14% Similarity=0.157 Sum_probs=176.5
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCcee-EEEEe-------cCCCEEEEEeCCCeEE
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVR-DISFC-------NDGTKFLTASYDKNIK 368 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~-~l~fs-------pdg~~l~s~s~Dg~I~ 368 (590)
.|...|.|+.|+.+ ...+.+++.+..++-|++..+...+..+. ..-|. ++-.- .....|+.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s~~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDSVEVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeeccccc-ceEEEeccCceEEEeecccchhhhhhhCC--cccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 57777889999987 66666665555555556533222221111 11111 11110 1235788899999999
Q ss_pred EEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 369 YWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
+.+- .++..+.+..+ ....+-.|++++. -|++.+.||.|++|. ++|-+..++-....+|.|++|.|+.+.++.+
T Consensus 89 il~k-~~rVE~sv~AH~~A~~~gRW~~dGt---gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 89 ILNK-SARVERSISAHAAAISSGRWSPDGA---GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred Eecc-cchhhhhhhhhhhhhhhcccCCCCc---eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9873 34444444332 3445666777664 599999999999998 4555555555677899999999998776665
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEE
Q 007757 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
-. +.+.|=.+.....+.... .|.+-|.++.|++..+++++|+.|-..++||..... .|......-.|++++|
T Consensus 164 ~g-~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~------Lf~S~~~ey~ITSva~ 235 (737)
T KOG1524|consen 164 QG-GHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN------LFTSAAEEYAITSVAF 235 (737)
T ss_pred cC-CeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccCcc------cccCChhccceeeeee
Confidence 43 567776776665555554 599999999999999999999999999999986532 2333333667999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
.|+ ..++.|+.+ ++++ -+...+.|..++|++ ++..++.|...|.+.+
T Consensus 236 npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 236 NPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIV 282 (737)
T ss_pred ccc-cceeeeeee-eeee-----------cCCCccceEEEEEcC-CCceeeccccCceEEE
Confidence 999 566665533 3331 123467899999999 5667888888887653
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=3.3e-12 Score=124.41 Aligned_cols=242 Identities=20% Similarity=0.314 Sum_probs=159.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeE-------------EEeccCCCceeEEEEecCCCEEEEEeC-C
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM-------------RTYMGHSKAVRDISFCNDGTKFLTASY-D 364 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-------------~~~~~h~~~V~~l~fspdg~~l~s~s~-D 364 (590)
...|+|++|-|.++.-|+.|+..| |.||........- ....+| ..|++|.|++||..+++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 467999999999888888888755 9999874332211 122345 68999999999999999987 5
Q ss_pred CeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCE
Q 007757 365 KNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
..|.|||..++..+..... ......+.|+|++ ..|+++..|+..++|.....-......--.+.|...+|+|.|++
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg---d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG---DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCC---CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 7899999999988776633 3445578898876 57999999999999965433222222223458999999999998
Q ss_pred EEEEeCCCcEEEEECCCCc------------EEEEee-----------cCCCCcccEEEEcCCCCEEEEEEcCC------
Q 007757 444 FVTSSDDKSLRVWEFGIPV------------VIKYIS-----------EPHMHSMPSISLHPNTNWLAAQSLDN------ 494 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~------------~~~~~~-----------~~~~~~i~~i~~sp~g~~l~s~s~dg------ 494 (590)
|+.++. |.-++|.+.... .+..+. .-..+.+.+++|.|.|.+|++.-..+
T Consensus 295 LLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 295 LLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 766553 333445442110 011110 01245688999999999999976543
Q ss_pred --eEEEEEccCceeecccccccCcccccceEEEEEcC---CCCEEEEEeCCCcEEEEeC
Q 007757 495 --QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 495 --~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs~dg~I~iwd~ 548 (590)
.|.+||.+..-... ..+.+.+...+...++|+| +|.+|..+=+.|.+.-|++
T Consensus 374 k~~i~~fdtr~sp~ve--ls~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 374 KLHISRFDTRKSPPVE--LSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhcccccCceE--EEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 36667765432221 1112222222233466666 5667777766777766654
No 220
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.52 E-value=2e-14 Score=152.34 Aligned_cols=232 Identities=19% Similarity=0.334 Sum_probs=173.7
Q ss_pred ccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC
Q 007757 265 DYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK 344 (590)
Q Consensus 265 d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~ 344 (590)
|.+|| ++.+..+....+.|+.....++.+.+||++.|+.++.+.+ ..+++++|.|..|++|.+ ..+.++..+.+|++
T Consensus 199 Drtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvWrl-~~~~pvsvLrghtg 275 (1113)
T KOG0644|consen 199 DRTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVWRL-PDGAPVSVLRGHTG 275 (1113)
T ss_pred ccccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhhhcccCceEEEEec-CCCchHHHHhcccc
Confidence 34444 3444444444455566677888999999999999999988 789999999999999999 79999999999999
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCCc--------------EEEE---------ccCC----------------C
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--------------VIRT---------FSTG----------------K 385 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~--------------~~~~---------~~~~----------------~ 385 (590)
+|++|+|+|-. +.+.||++++||.+-.- .+.. +..+ +
T Consensus 276 avtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 276 AVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred ceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 99999999953 77889999999987110 0000 0000 0
Q ss_pred CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEE
Q 007757 386 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
....+-....++...+.+++-.+..+.+|++-++.+...+.+|...+..+.++|-+.+ ..+++.||+..|||+-.+.++
T Consensus 352 ~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 352 SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 0000111111112234455556677899999999999999999999999999997665 468899999999999888888
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
+....+ ...+....|+++|..++....-|.++|+....+
T Consensus 432 k~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 432 KHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred eeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 777655 445666799999999999888899999876543
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=5e-14 Score=140.92 Aligned_cols=228 Identities=13% Similarity=0.192 Sum_probs=186.9
Q ss_pred eeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE
Q 007757 346 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 346 V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~ 425 (590)
-..+.++.+|++|+.|+.-|.|..+|+.++++...+.....+..+.|..... +++......++|||-. |..+..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq----~~AVAQK~y~yvYD~~-GtElHCl 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ----FFAVAQKKYVYVYDNN-GTELHCL 206 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchH----HHHhhhhceEEEecCC-CcEEeeh
Confidence 4568889999999999999999999999999999998877777777765442 5556677899999954 5556666
Q ss_pred cccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce
Q 007757 426 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 426 ~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~ 505 (590)
+.| ..|..+.|.|..-+|++++..|.++.-|+.+++.+..+.. ..+.+..++-+|-...+-+|...|+|.+|+.....
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 543 5789999999998999999999999999999998877754 56778889999999999999999999999998876
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 007757 506 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 506 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
.+..+.. | .+.|.+|++.++|+|+++.+.|..|+|||++....+.++.. ..+...+++|. .+ ++.+|....
T Consensus 285 PLvKiLc---H--~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq-kg--lLA~~~G~~ 355 (545)
T KOG1272|consen 285 PLVKILC---H--RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ-KG--LLALSYGDH 355 (545)
T ss_pred hHHHHHh---c--CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc-cc--ceeeecCCe
Confidence 6644433 3 46678899999999999999999999999999887777665 34567788876 33 555666668
Q ss_pred EEEe
Q 007757 586 IKYW 589 (590)
Q Consensus 586 I~iW 589 (590)
|.||
T Consensus 356 v~iw 359 (545)
T KOG1272|consen 356 VQIW 359 (545)
T ss_pred eeee
Confidence 8888
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=3.9e-11 Score=124.93 Aligned_cols=264 Identities=16% Similarity=0.197 Sum_probs=168.1
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe-CCCe
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN 366 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~ 366 (590)
..+++.++......-..+.|+|+ ++++++++.||.|.++|+ .+.+.+.++.... ...++++++||+++++++ ..+.
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~-~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDL-ATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEET-TSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTE
T ss_pred CCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEEC-CcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCc
Confidence 35677788765554455779999 899999999999999999 6778888886543 468899999999998776 5799
Q ss_pred EEEEECCCCcEEEEccCCCC------ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE-EEcccCCceeEEEEeC
Q 007757 367 IKYWDTETGQVIRTFSTGKI------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVD 439 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~------~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~-~~~~h~~~V~~i~~~p 439 (590)
+.++|.++.+.++.+..... .....+...+.+..++++--..+.|.+.|......+. .............|.|
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 99999999999998765422 2233333222332345555556899999987764332 2223445677899999
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCcEEEEeecC------------------------------------------------
Q 007757 440 SNRRFVTS-SDDKSLRVWEFGIPVVIKYISEP------------------------------------------------ 470 (590)
Q Consensus 440 ~~~~l~s~-s~Dg~I~iwdl~~~~~~~~~~~~------------------------------------------------ 470 (590)
++++|+.+ ..+..|-++|..+...+..+...
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 99988765 44567778887665443332100
Q ss_pred -----CCCcccEEEEcCCCCEEEEE----EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC--
Q 007757 471 -----HMHSMPSISLHPNTNWLAAQ----SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-- 539 (590)
Q Consensus 471 -----~~~~i~~i~~sp~g~~l~s~----s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-- 539 (590)
..+.-..+..||+++++.+. ...+.|.++|..+......+....+ ..+..+.|+++|+++..+..
T Consensus 262 v~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~----~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 262 VKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG----KRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp EEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EEEEEE-TTSSEEEEEEE--
T ss_pred EEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC----CcEeccEECCCCCEEEEEEecC
Confidence 00111346678999999998 3348899999988755444332222 23667999999998766553
Q ss_pred CCcEEEEeCCCCeEEEEEe
Q 007757 540 EGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~ 558 (590)
+|.|.+||..+.+.+..+.
T Consensus 338 ~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 338 NGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCcEEEEEEE
Confidence 4479999999999999887
No 223
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.3e-12 Score=139.82 Aligned_cols=219 Identities=15% Similarity=0.163 Sum_probs=144.3
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEEccCCCe--eEEEeccCCCceeEEEEecCCCEEEEEe-CCCe
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~ 366 (590)
+.+..|...|.+++|+|+ |+.|+.++.+ ..|++||+ ..+. .+..+.+| ...++|+|||+.|+.++ .+|.
T Consensus 197 ~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl-~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDL-RSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred eEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeC-CCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 456788889999999999 7878776643 36999999 4443 33334443 44689999999888765 6776
Q ss_pred EEEE--ECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeCCCCE
Q 007757 367 IKYW--DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 367 I~vW--d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
+.|| |+.++................|++++. .+++++..++...+|++... .....+ .+.+ .++.|+|++++
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~--~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQ--SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT 346 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE
Confidence 5555 676666544433333444567776543 45556556788888876432 222223 3433 45789999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc--CceeecccccccCcccccc
Q 007757 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR--ERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~ 521 (590)
|+.++.++ +.+||+.++...... .. .....+.|+|+|++|+.++.++.+.+|.+. ++... ..+.++ .+.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt-~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~---~~l~~~--~g~ 417 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLS-ST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK---ARLPGS--DGQ 417 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEec-CC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce---EEccCC--CCC
Confidence 98888765 666999877654322 22 234567899999999999999988887753 23222 223333 344
Q ss_pred eEEEEEcCC
Q 007757 522 ACQVNFSPD 530 (590)
Q Consensus 522 v~~v~~spd 530 (590)
+..++|+|-
T Consensus 418 ~~~p~wsp~ 426 (429)
T PRK01742 418 VKFPAWSPY 426 (429)
T ss_pred CCCcccCCC
Confidence 556888874
No 224
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.5e-12 Score=118.09 Aligned_cols=231 Identities=11% Similarity=0.146 Sum_probs=163.7
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCC---------c-EEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEE
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETG---------Q-VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~---------~-~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~v 413 (590)
.|..-+|+|.+++|+.|..+|.|.+..+.+- + .+..+. ...+.+.+.|.. .+|++|+ ||.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-----hheeecc-CceEEE
Confidence 3566689999999999999999999988642 1 122222 233445555552 3455554 599999
Q ss_pred EECCCCce------EEEE--ccc-----CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEE
Q 007757 414 WDMNTKEI------TQEY--DQH-----LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 414 wDl~t~~~------~~~~--~~h-----~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
|..+.... +.+. ..| -..|+++...|..+.++.++.|+.++.||+.+++..+.+. +|...+.++..
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeee
Confidence 98764321 1111 112 2468999999988888888899999999999998777765 69999999998
Q ss_pred cCCCCEEEEEEcCCeEEEEEccCceeecccccccCcc-----cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 007757 481 HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 481 sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
-.....+++|+.||++++||+++.+....+..++... ...+|.+++. +..+|++|+. ..+.+|.+++.++..
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTC 241 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceE
Confidence 6667789999999999999999987766554433221 2345655555 5568888764 479999999998888
Q ss_pred EEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 556 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 556 ~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.|.. ...+..+.|.. ..++++|....|.-|
T Consensus 242 vfpi-pa~v~~v~F~~---d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 242 VFPI-PARVHLVDFVD---DCVLIGGEGNHVQSY 271 (325)
T ss_pred EEec-ccceeEeeeec---ceEEEeccccceeee
Confidence 8763 44577888854 467777766555544
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.48 E-value=3e-13 Score=130.04 Aligned_cols=222 Identities=19% Similarity=0.209 Sum_probs=157.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc
Q 007757 348 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 427 (590)
Q Consensus 348 ~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~ 427 (590)
-.+|+|+|+++++++.- .+.|-|.++-+..+.|..-..+..+.|..+ ...++.+...++.|.+|++...+-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ad--s~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKAD--SCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeecc--ceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46899999999999865 888889998887777766555555666654 346677778899999999999988888888
Q ss_pred cCCceeEEEEeCCCCEEE-EEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee
Q 007757 428 HLGAVNTITFVDSNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~-s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 506 (590)
...++.+++|+|+|+.++ +..-+-.|.+|.+.+....... -....+..++|+|+|++.+.++.-.....+.+.....
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 889999999999997655 5566889999999887655433 2345568999999999999887653322222221111
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~--dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
....+.+.-. ....+.+.|+|||..|++=.+ +-.|+.|. -.-.+..++|+| .+++|+.|+.|+
T Consensus 168 W~ll~~f~~d--T~DltgieWsPdg~~laVwd~~Leykv~aYe------------~~lG~k~v~wsP-~~qflavGsyD~ 232 (447)
T KOG4497|consen 168 WILLKEFKLD--TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE------------RGLGLKFVEWSP-CNQFLAVGSYDQ 232 (447)
T ss_pred HHHHHhcCCC--cccccCceECCCCcEEEEecchhhheeeeee------------eccceeEEEecc-ccceEEeeccch
Confidence 1111222222 123456899999998875432 22222221 123578899999 788999999999
Q ss_pred cEEEe
Q 007757 585 LIKYW 589 (590)
Q Consensus 585 ~I~iW 589 (590)
.+||-
T Consensus 233 ~lrvl 237 (447)
T KOG4497|consen 233 MLRVL 237 (447)
T ss_pred hhhhh
Confidence 99874
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.8e-13 Score=134.70 Aligned_cols=256 Identities=16% Similarity=0.239 Sum_probs=190.1
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceE--EEEecCCCCCcEEEEEEcCCcE
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~lvsg~~dg~I 411 (590)
.+...+..|.+.|..|.|+..|..|++++.|..|.+||+..++.+..|..+|...+ ..|.|.... ..+++++.||.+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCce
Confidence 34456788999999999999999999999999999999999999999988776554 346665443 568889999999
Q ss_pred EEEECCC-Cc--eEEEEcccCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEee--cCCCC---cccEEEEcC
Q 007757 412 VQWDMNT-KE--ITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMH---SMPSISLHP 482 (590)
Q Consensus 412 ~vwDl~t-~~--~~~~~~~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~---~i~~i~~sp 482 (590)
++=.+.. +. ....+..|.++|.-++..|... .|.+++.|+.+.-+|++...+...+. ..+.. ....++.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9876643 22 2345667999999999998754 68999999999999998765443332 12222 467888888
Q ss_pred CCC-EEEEEEcCCeEEEEEccCceeec---ccccccCc----ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C-
Q 007757 483 NTN-WLAAQSLDNQILIYSTRERFQLN---KKKRFAGH----IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--C- 551 (590)
Q Consensus 483 ~g~-~l~s~s~dg~I~iwd~~~~~~~~---~~~~~~~~----~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--~- 551 (590)
... .+++++.|..+++||.+.-.... .+..+..+ .....|++++|+.++.-|++...|-.|+++.-.- |
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 755 89999999999999987532210 11122211 2245688999998888887888888899995322 2
Q ss_pred ---------eEEEE-EecCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 552 ---------KVFRT-LKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ---------~~~~~-l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..+.. +++|.. .|.++-|.-....++++|+.-|.|.|||
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 22333 778865 5777766533678999999999999997
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=1.3e-11 Score=119.61 Aligned_cols=273 Identities=21% Similarity=0.366 Sum_probs=180.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe----eEEEeccCC------------CceeEEEEecCC--CEEEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK----CMRTYMGHS------------KAVRDISFCNDG--TKFLT 360 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~----~~~~~~~h~------------~~V~~l~fspdg--~~l~s 360 (590)
..-|.+|.|... |.+|++|..+|.|.++.-....+ ....++.|. ..|..+.|.+++ ..|+.
T Consensus 25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456899999998 99999999999999997643333 344555553 358889999854 47888
Q ss_pred EeCCCeEEEEECCCCcEEE-EccCC-----CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-cccCCcee
Q 007757 361 ASYDKNIKYWDTETGQVIR-TFSTG-----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVN 433 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-~~h~~~V~ 433 (590)
.+.|.+|++|.+....... .+... ..+..+. +.+.+..+-.+. ..+.+.+ ..|..-|+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr---------~p~~~~~~~~ve------a~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR---------LPVEGRHDLEVE------ASPRRVYANAHTYHIN 168 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceee---------ceeeccccceee------eeeeeeccccceeEee
Confidence 8899999999886543222 00000 0000000 011111111110 0122222 46888999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--CC-----CCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCce
Q 007757 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE--PH-----MHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--~~-----~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~ 505 (590)
+|.++.+...++++. |=.|.+|.+........+.. |+ +.-|++..|||. .+.|+..+..|.|++.|++...
T Consensus 169 SIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 169 SISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 999999998888775 67899999875433333221 12 234888899996 5678888899999999998432
Q ss_pred ee-cccccccCcc----------cccceEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEEEEecCCC-----------
Q 007757 506 QL-NKKKRFAGHI----------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KSCKVFRTLKCHEG----------- 562 (590)
Q Consensus 506 ~~-~~~~~~~~~~----------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~-~t~~~~~~l~~h~~----------- 562 (590)
.. ...+.+.... .-..|..+.|++.|+|+++-+.- +|++||+ ...+++.+++.|..
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 11 1111111100 12346789999999999998754 7999999 56778888877742
Q ss_pred -C---EEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 563 -V---CIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 -~---V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
. -..|+|+- +...++||+....+++++
T Consensus 327 D~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 327 DAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cchhheeEEEEcC-CcceEecccccceEEEec
Confidence 2 24688988 677999999999999885
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=9e-12 Score=122.73 Aligned_cols=209 Identities=13% Similarity=0.133 Sum_probs=163.1
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC---CeeEEEeccCCCceeEEEEecCC-CEEEEEeCC--CeE
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYMGHSKAVRDISFCNDG-TKFLTASYD--KNI 367 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~---~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~D--g~I 367 (590)
+..+-+++|-.++.. ...|++|-.+|.+.+|..... ...+..+..+ ..+..|.-++.. ..+++|+.. ..+
T Consensus 100 ~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred ccccccccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccce
Confidence 445667778888765 347888999999999998311 1233333333 456677777644 455668888 889
Q ss_pred EEEECCCCcEEEEccCCC----------CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEE
Q 007757 368 KYWDTETGQVIRTFSTGK----------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTIT 436 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~----------~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~ 436 (590)
.|||++..+.+..-.... ....+.|.+... ...|++++.-+.|++||.+.+ +++..+.--..+|+++.
T Consensus 176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG 254 (412)
T ss_pred eeeecccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence 999999886666543321 122344544422 477999999999999999976 67888888889999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceee
Q 007757 437 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 507 (590)
..|.++.+++|..-|.+..||++.+...........++|++|..||.+.++++++.|..|+|+|+.+...+
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99999999999999999999999999988877778899999999999999999999999999999885544
No 229
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=6.3e-11 Score=121.80 Aligned_cols=269 Identities=16% Similarity=0.248 Sum_probs=170.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEE-----eCC-----CeEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-----SYD-----KNIK 368 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-----s~D-----g~I~ 368 (590)
..+++..+++++ |++++.+ .+..++|++.. ....+.+...- .+.++.|+|-|++|.+- ..+ -.++
T Consensus 34 ~~~~~v~~~S~~-G~lfA~~-~~~~v~i~~~~-~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNN-GRLFAYS-DNQVVKVFEIA-TLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCC-CcEEEEE-cCCeEEEEEcc-CCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 344667778887 7766655 46789999984 34333333322 78999999999988763 112 4578
Q ss_pred EEECCCCcEEEEccCCCC-ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC-C-EEE
Q 007757 369 YWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN-R-RFV 445 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~-~-~l~ 445 (590)
+|+++++.....+..... .++..|+.+.. +++-...+.+++|++...+.+.. .-|...|+.+.++|.+ . .++
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEE
Confidence 999999665555544322 25666666543 44444556777777765322211 1234445555554431 1 111
Q ss_pred E-----EeCCC---------------------------------------------------------cEEEEECCCCcE
Q 007757 446 T-----SSDDK---------------------------------------------------------SLRVWEFGIPVV 463 (590)
Q Consensus 446 s-----~s~Dg---------------------------------------------------------~I~iwdl~~~~~ 463 (590)
+ .+.-+ ++++.++.....
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 1 12222 344444432222
Q ss_pred EEEeecCCCCcccEEEEcCCCCEEEEE--EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe---
Q 007757 464 IKYISEPHMHSMPSISLHPNTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--- 538 (590)
Q Consensus 464 ~~~~~~~~~~~i~~i~~sp~g~~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--- 538 (590)
.. .....++|.++.|+|+++-|+++ -+-..+.|||++..-.. .+. .+.-.++-|+|.|++|+.++
T Consensus 264 ~V--~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~----df~----egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 264 SV--PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF----DFP----EGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred EE--ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE----eCC----CCCccceEECCCCCEEEEeecCC
Confidence 21 22357899999999999876654 46678999999764222 111 23445689999999988765
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC------CCcEEEeC
Q 007757 539 GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW------DGLIKYWD 590 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~------DG~I~iWD 590 (590)
--|.|-|||+.+.+++..+.+... +-+.|+| ++.+++|+.. |+.|+||+
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~P-dGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKAANT--TVFEWSP-DGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCCceEEEeccchhhccccccCCc--eEEEEcC-CCcEEEEEeccccEEecCCeEEEE
Confidence 358999999999999999887654 5689999 6778887765 78899995
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=5.7e-11 Score=126.93 Aligned_cols=233 Identities=16% Similarity=0.187 Sum_probs=154.0
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC---CeEEEEECCCCcEEEEccCCCCceEEEEecCCCC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
..|.++|. .+...+.+..+...+....|+|+|++|+.++.. ..|.+||+.+++...............|++++.
T Consensus 170 ~~l~~~d~--~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~- 246 (417)
T TIGR02800 170 YELQVADY--DGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS- 246 (417)
T ss_pred ceEEEEcC--CCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC-
Confidence 35777776 344455566677789999999999999987754 479999999987655443334444566766542
Q ss_pred CcEEEEEEcCC--cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeecCCCC
Q 007757 399 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 399 ~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
.++++.+.++ .|++||+.++... .+..+........|+|++++|+.++.. + .|+++++...... .+. .+..
T Consensus 247 -~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~ 322 (417)
T TIGR02800 247 -KLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGG 322 (417)
T ss_pred -EEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCC
Confidence 4555555444 5999999887643 333455555678999999988876653 3 5888888766543 332 2345
Q ss_pred cccEEEEcCCCCEEEEEEcCC---eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC---cEEEEe
Q 007757 474 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWD 547 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd 547 (590)
.+..+.|+|++++|+.++.++ .|.+||+.++.... +... .......|+|+|++|+..+.++ .+++.+
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~----l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV----LTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE----ccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 567889999999999988776 78899987643221 1111 1122468999999988777654 355555
Q ss_pred CCCCeEEEEEecCCCCEEEEEE
Q 007757 548 WKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
. ++.....+..+.+.+..+.|
T Consensus 396 ~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 T-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C-CCceeeECCCCCCCcCCCCC
Confidence 3 44555555544455555555
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=8.9e-10 Score=114.52 Aligned_cols=273 Identities=10% Similarity=0.210 Sum_probs=173.8
Q ss_pred EEEEeCC----CcEEEEEccCCCeeEEEe--ccCCCceeEEEEecCCCEEEEEeC----CCeEEEEECCCC--c--EEEE
Q 007757 315 ILSAGMD----TKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCNDGTKFLTASY----DKNIKYWDTETG--Q--VIRT 380 (590)
Q Consensus 315 L~sgs~D----g~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fspdg~~l~s~s~----Dg~I~vWd~~t~--~--~~~~ 380 (590)
++.|+.. +.|.+|.+......+..+ ..-......|+++|++++|+++.. ++.|..|.+... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556655 688888883333222221 123455678999999999999877 479999988764 3 3344
Q ss_pred cc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-CceEEE---Ec----------ccCCceeEEEEeCCCCEEE
Q 007757 381 FS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQE---YD----------QHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 381 ~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-~~~~~~---~~----------~h~~~V~~i~~~p~~~~l~ 445 (590)
.. .+..+..+.+.+++. .++++...+|.|.++++.. +.+... +. .......++.++|++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEESSSCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eccCCCCcEEEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 44 456666677766543 4555556799999999987 433322 21 1234578999999999887
Q ss_pred EEeC-CCcEEEEECCCCc--E--EEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcc--Cce--eecccccccC
Q 007757 446 TSSD-DKSLRVWEFGIPV--V--IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTR--ERF--QLNKKKRFAG 515 (590)
Q Consensus 446 s~s~-Dg~I~iwdl~~~~--~--~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~--~~~--~~~~~~~~~~ 515 (590)
+... ...|.+|++.... . ...+..+.......++|+|+++++++.. .++.|.+|++. .+. .+........
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 7643 4579999987654 2 2334445667788999999999887665 46889999987 221 1111222211
Q ss_pred -cccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CC--eEEEEEecCCCCEEEEEEcCCCCCEEEEE-eCCCcEEE
Q 007757 516 -HIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWK--SC--KVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWDGLIKY 588 (590)
Q Consensus 516 -~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~--t~--~~~~~l~~h~~~V~~v~~sp~~~~~l~s~-g~DG~I~i 588 (590)
.........+.++|||++|+++. ..+.|.+|++. ++ +.+..+.........++++|+ +++|+++ ..++.|.+
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD-GRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT-SSEEEEEETTTTEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCeEEE
Confidence 11112566799999999988776 56789999983 33 344555554556899999994 5555554 46778888
Q ss_pred eC
Q 007757 589 WD 590 (590)
Q Consensus 589 WD 590 (590)
|+
T Consensus 319 f~ 320 (345)
T PF10282_consen 319 FD 320 (345)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 232
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.44 E-value=6.1e-12 Score=120.91 Aligned_cols=204 Identities=14% Similarity=0.221 Sum_probs=152.8
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~ 421 (590)
-..+|+|.+|++|...++.+.....|.||.....+. -+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------------------------------------w~~ 47 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------------------------------------WEP 47 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------------------------cee
Confidence 346778888888877777777766676665432211 134
Q ss_pred EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc---EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEE
Q 007757 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~---~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~i 498 (590)
..++..|...|++|+|.|..+.|++++.|..-++|....+. +...+. .+....+++.|+|.++.|++|+....|.|
T Consensus 48 ~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isV 126 (361)
T KOG1523|consen 48 AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISV 126 (361)
T ss_pred ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEE
Confidence 56677899999999999999999999999999999984332 222222 36778999999999999999999999999
Q ss_pred EEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC------------------CCeEEEEEecC
Q 007757 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK------------------SCKVFRTLKCH 560 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~------------------t~~~~~~l~~h 560 (590)
|-+......-..+..+ ......|.+++|+|++-+|++|+.|+..++|..- -|.++..+...
T Consensus 127 cy~E~ENdWWVsKhik-kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 127 CYYEQENDWWVSKHIK-KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS 205 (361)
T ss_pred EEEecccceehhhhhC-CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence 9876543332222222 2235678899999999999999999999999631 13344455455
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 561 EGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 561 ~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.+-|..+.|+| .+..|+-.+.|++|.+=
T Consensus 206 ggwvh~v~fs~-sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 206 GGWVHGVLFSP-SGNRLAWVGHDSTVSFV 233 (361)
T ss_pred CCceeeeEeCC-CCCEeeEecCCCceEEe
Confidence 67899999999 77899999999988763
No 233
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=2.2e-11 Score=118.19 Aligned_cols=312 Identities=16% Similarity=0.208 Sum_probs=209.5
Q ss_pred cccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC---CCeeE
Q 007757 260 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCM 336 (590)
Q Consensus 260 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~---~~~~~ 336 (590)
.+...|...|.|+--..+..-+...-+ -..+++++.+.+. ...|+.|-..|++.-+.+.. ....+
T Consensus 40 ~~~s~drtvrv~lkrds~q~wpsI~~~-----------mP~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedfnkm~~~ 107 (404)
T KOG1409|consen 40 ISVSEDRTVRVWLKRDSGQYWPSIYHY-----------MPSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDFNKMTFL 107 (404)
T ss_pred EEccccceeeeEEeccccccCchhhhh-----------CCCCceEeeeecc-ceEEEEEEecceEEEEEhhhhhhhcchh
Confidence 455678999999775554332222222 2456888999998 78899999999999887743 33566
Q ss_pred EEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC
Q 007757 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl 416 (590)
+.+..|...|..+-|+-...++++++.|..+.---.+.+..+..+..........+.. .+...|...|.|....+
T Consensus 108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~-----~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA-----LYAFVGDHSGQITMLKL 182 (404)
T ss_pred hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee-----EEEEecccccceEEEEE
Confidence 7788999999999999999999999999888766666665544332221111111111 14556666677766554
Q ss_pred --CCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC
Q 007757 417 --NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 417 --~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 494 (590)
..-.++.++.+|.+.+.+++|.+....|.+|..|..+.+||+....-+......|...|..+...+--+.+++++.||
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg 262 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDG 262 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCC
Confidence 344678889999999999999999999999999999999999887777777778999999999888889999999999
Q ss_pred eEEEEEccCceeecccc--------------------------cccCcc---cccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007757 495 QILIYSTRERFQLNKKK--------------------------RFAGHI---VAGYACQVNFSPDGRFVMSGDGEGKCWF 545 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~--------------------------~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~i 545 (590)
.|.+|+++........- .+..|. ....++..+-+....+...| ..-.+++
T Consensus 263 ~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg-~e~~vR~ 341 (404)
T KOG1409|consen 263 GIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG-FEFSVRV 341 (404)
T ss_pred eEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc-ceeEEEE
Confidence 99999987533221100 001111 11122222222222222222 2223444
Q ss_pred EeCC-------CCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 546 WDWK-------SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 546 wd~~-------t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
-|.- +..++..+..-...|+.+.+-. .-.+|+|+|.|..|+|||
T Consensus 342 ~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd 392 (404)
T KOG1409|consen 342 CDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWD 392 (404)
T ss_pred ecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEe
Confidence 4421 1122333332223578888776 455899999999999998
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.4e-10 Score=124.65 Aligned_cols=234 Identities=15% Similarity=0.147 Sum_probs=153.0
Q ss_pred cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC---CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCC
Q 007757 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 399 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (590)
.|.++|. ++...+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 199 ~l~i~d~--dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADY--DGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeC--CCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC--
Confidence 5666676 344345566677889999999999999877543 368899999887644333333333556776543
Q ss_pred cEEEEEEcCCc--EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCCc
Q 007757 400 NILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHS 474 (590)
Q Consensus 400 ~~lvsg~~dg~--I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~~ 474 (590)
.++++...++. |+++|+.+++... +..+........|+|+++.|+..+. ++ .|+++|+..+....... ....
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~~ 351 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGEQ 351 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCCC
Confidence 56666666664 8888998876543 4445556678899999998877664 33 47777877665433221 2222
Q ss_pred ccEEEEcCCCCEEEEEEcC-C--eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC-CC--cEEEEeC
Q 007757 475 MPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EG--KCWFWDW 548 (590)
Q Consensus 475 i~~i~~sp~g~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg--~I~iwd~ 548 (590)
....+|+|+|++|+..+.+ + .|.++|+.++.... +. ... ......|+|+|++|+..+. +| .|++++.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt--~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT--STR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc--CCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 3457899999998887654 3 45667776653221 11 111 1113579999999876554 33 3777786
Q ss_pred CCCeEEEEEecCCCCEEEEEEcC
Q 007757 549 KSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 549 ~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
++.....+..+.+.+...+|+|
T Consensus 425 -~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 -DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCCceEECcCCCCCcCCCccCC
Confidence 5666677776777788889988
No 235
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.3e-10 Score=124.70 Aligned_cols=234 Identities=12% Similarity=0.121 Sum_probs=154.8
Q ss_pred cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC---CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCC
Q 007757 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 399 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (590)
.|.++|. ++...+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 180 ~l~~~d~--~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDY--DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECC--CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC--
Confidence 3666676 344455666677889999999999999877654 369999999887655433333333566776543
Q ss_pred cEEEEEEcCC--cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCCc
Q 007757 400 NILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHS 474 (590)
Q Consensus 400 ~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~~ 474 (590)
.++++...++ .|++||+.++.... +..+........|+|+++.|+..+. ++ .|+++++..+....... ....
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~ 332 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNY 332 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCC
Confidence 4555555555 68889999886543 4445556677899999998877664 33 57778887665433321 1223
Q ss_pred ccEEEEcCCCCEEEEEEcCC---eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC---CcEEEEeC
Q 007757 475 MPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDW 548 (590)
Q Consensus 475 i~~i~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~ 548 (590)
.....|+|+|++|+..+..+ .|.+||+.++.... +.. .. ......|+|||++|+..+.+ ..|+++++
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TS----LDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CC----CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 34578999999998877543 58888987654321 111 11 11236899999999876643 35777787
Q ss_pred CCCeEEEEEecCCCCEEEEEEcC
Q 007757 549 KSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 549 ~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
. +.....+..+.+.+...+|+|
T Consensus 406 ~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 406 N-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred C-CCceEECcCCCCCcCCCccCC
Confidence 4 444445555666778888887
No 236
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.41 E-value=4.7e-12 Score=129.02 Aligned_cols=196 Identities=20% Similarity=0.309 Sum_probs=131.3
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCeeEEEec----cCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEccC
Q 007757 309 PKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 309 p~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
|. +.-|+.|-.-|.|.+.|... ....+.+. -....|+|+.|-| +...|+.+-.+|.+.++|.+ +..
T Consensus 183 ~~-g~dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~~ 253 (636)
T KOG2394|consen 183 PK-GLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IVC 253 (636)
T ss_pred CC-CcceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------ccc
Confidence 44 56677788888898888732 22111111 1246899999999 45677777889999999872 111
Q ss_pred CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 007757 384 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV 463 (590)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~ 463 (590)
+....+......++ .+.....-+ ..+..++..+.--.+.|+.++|+|||++|++.+.||.++|||+.+...
T Consensus 254 ~~t~p~~~~~k~~~---~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 254 GATAPSYQALKDGD---QFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL 324 (636)
T ss_pred cCCCCcccccCCCC---eeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH
Confidence 21222222222221 122211110 112234444444456899999999999999999999999999988776
Q ss_pred EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEc
Q 007757 464 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 464 ~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
+..+. ..-+...|++|+|||+||++|+.|.-|.||++..+..+ ..-.+| ..+|..|+|.
T Consensus 325 lg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV---ARGqGH--kSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV---ARGQGH--KSWVSVVAFD 383 (636)
T ss_pred HHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE---Eecccc--ccceeeEeec
Confidence 65443 35567899999999999999999999999999876544 223344 6788888887
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.1e-10 Score=125.15 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=134.5
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEE-EEeCCC--e
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDK--N 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg--~ 366 (590)
+.+..|...|.+.+|+|+ ++.|+.++.+ ..|.+|++ ..+.. ..+..+.+...++.|+|+|+.|+ +.+.+| .
T Consensus 197 ~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl-~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 197 QTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDL-ATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred eEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEEC-CCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 445677888999999999 7777776643 46999999 44443 23334455566889999999775 445555 5
Q ss_pred EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCc--EEEEECCCCceEEEEcccCCceeEEEEeCCCCEE
Q 007757 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~--I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
|.+||+.+++...............|++++. .++++...+|. |+++|+.+++.... ..+......+.|+|+|++|
T Consensus 274 Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 274 IYVMDLGSRQLTRLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNARASVSPDGKKI 350 (433)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEE
Confidence 9999999887654333323334556766542 34444434444 77778877764332 2233445578999999999
Q ss_pred EEEeCCC---cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEccC
Q 007757 445 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRE 503 (590)
Q Consensus 445 ~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~ 503 (590)
+..+.++ .|.+||+.++... .+.. ........|+|+|++|+..+.+ +.|.++++..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 8775443 5999999776654 3332 2234567999999988877654 4577777754
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=3.6e-11 Score=113.98 Aligned_cols=147 Identities=20% Similarity=0.372 Sum_probs=104.6
Q ss_pred eEEEEeCCCCEEEEEeC----------CCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCCCEEEEEE--cCCeEEEE
Q 007757 433 NTITFVDSNRRFVTSSD----------DKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIY 499 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~s~----------Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s--~dg~I~iw 499 (590)
..+.|+++|.+|++-.. -+...+|-++.. ..+..+......+|..++|+|+|..|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788888887765433 133555555322 334444334456799999999999876653 56799999
Q ss_pred EccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCE
Q 007757 500 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 576 (590)
|++. ..+ ..+. ...+..+.|||+|++|++|+. .|.|.|||..+.+.+.++. |. .++.++|+| ++++
T Consensus 89 d~~~-~~i---~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsP-dGr~ 157 (194)
T PF08662_consen 89 DVKG-KKI---FSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSP-DGRY 157 (194)
T ss_pred cCcc-cEe---Eeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcC-CCCE
Confidence 9963 222 2222 234567999999999998864 4779999999999988775 33 478999999 7778
Q ss_pred EEEEeC------CCcEEEeC
Q 007757 577 VATCGW------DGLIKYWD 590 (590)
Q Consensus 577 l~s~g~------DG~I~iWD 590 (590)
|+++.. |..++||+
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEEEeccceeccccEEEEE
Confidence 888774 78889985
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.5e-10 Score=122.08 Aligned_cols=221 Identities=15% Similarity=0.160 Sum_probs=142.0
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEe---CCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEE-eCCC--eE
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAG---MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDK--NI 367 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs---~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg--~I 367 (590)
.+..+...+.+.+|+|+ |+.|+..+ .+..|.+|++ ..++. ..+......+..+.|+|||+.|+.. +.+| .|
T Consensus 193 ~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl-~~G~~-~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTL-ANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred EeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEEC-CCCCe-EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 44456778999999999 77776543 2457999998 44533 2222333445678999999988865 4444 59
Q ss_pred EEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC--cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEE
Q 007757 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
.+||+.+++...............|+|++. .++++...++ .|+++|+.++... .+..+.....+..|+|+|++|+
T Consensus 270 ~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 270 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEECCCCCEEEccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEE
Confidence 999999887766554444445666776542 3444443344 4666677776543 3333444567789999999998
Q ss_pred EEeCC---CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe---EEEEEccCceeecccccccCcccc
Q 007757 446 TSSDD---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ---ILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 446 s~s~D---g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~---I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
..+.+ ..|++||+.++... .+... .......|+|+|++|+..+.++. +.++++.... .. .+.++ .
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~---~l~~~--~ 417 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KA---RLPAT--D 417 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eE---ECccC--C
Confidence 76643 35888998777543 33322 23456789999999999988764 6667764432 21 12222 2
Q ss_pred cceEEEEEcC
Q 007757 520 GYACQVNFSP 529 (590)
Q Consensus 520 ~~v~~v~~sp 529 (590)
+.+...+|+|
T Consensus 418 ~~~~~p~Wsp 427 (429)
T PRK03629 418 GQVKFPAWSP 427 (429)
T ss_pred CCcCCcccCC
Confidence 3455577776
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.4e-10 Score=122.75 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=138.7
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEE-EEeCCCe-
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKN- 366 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~---Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~- 366 (590)
.+.+..|...|.+.+|+|+ |+.|+..+. +..|.+||+ ..+.. ..+..+.+.+....|+|||+.|+ +.+.++.
T Consensus 194 ~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl-~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDL-ETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred cEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEEC-CCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 3456688889999999999 777776653 468999999 44443 34556677788999999999876 5555554
Q ss_pred -EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC--cEEEEECCCCceEEEEcccCCceeEEEEeCCCCE
Q 007757 367 -IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 367 -I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
|.+||+.++................|++++. .++++...+| .|+++|+.++.... +..+.+.+....|+|+|+.
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGS--QIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcCCCC--EEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCE
Confidence 7778998887655433333344566776542 3444433333 68888987765443 3334556777899999999
Q ss_pred EEEEeCC---CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC------CeEEEEEccCc
Q 007757 444 FVTSSDD---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD------NQILIYSTRER 504 (590)
Q Consensus 444 l~s~s~D---g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d------g~I~iwd~~~~ 504 (590)
|+..+.+ ..|.+||+..... ..+.. ...+..+.|+|+|++|+..+.+ ..|.++++...
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 9887653 3588888755433 33332 2356788999999998876543 25777787654
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=9.2e-11 Score=111.14 Aligned_cols=118 Identities=14% Similarity=0.339 Sum_probs=90.2
Q ss_pred cCCceeEEEEeCCCCEEEEE--eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcc
Q 007757 428 HLGAVNTITFVDSNRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTR 502 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~--s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~ 502 (590)
..++|.+++|+|+++.|++. ..++.|.+||++ ...+..+ ....+..+.|+|+|++|++++.+ |.|.+||.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 44679999999999987655 356799999996 4445444 34577889999999999998754 679999999
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEE
Q 007757 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~t~~~~~~l 557 (590)
+...+.... ...+..++|+|+|++|+++.. |..++||+. +|+++...
T Consensus 134 ~~~~i~~~~-------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 134 KKKKISTFE-------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCEEeeccc-------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 765553322 133568999999999998874 678999997 46666543
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=4.7e-09 Score=109.08 Aligned_cols=266 Identities=14% Similarity=0.233 Sum_probs=169.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeC----CCcEEEEEccCC-Ce--eEEEeccCCCceeEEEEecCCCEEEEEeC-CCeEEEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGM----DTKVKIWDVVNS-GK--CMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYW 370 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~----Dg~I~iWd~~~~-~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~I~vW 370 (590)
......|+++|+ +++|++... ++.|..|.+... +. .+............++++|++++|+++.+ +|.|.++
T Consensus 36 ~~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 344667889999 788888766 579999998544 33 33334334556678999999999999986 7999999
Q ss_pred ECCC-CcEEEE---c-----------cCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc--eEE--EEc-ccCC
Q 007757 371 DTET-GQVIRT---F-----------STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQ--EYD-QHLG 430 (590)
Q Consensus 371 d~~t-~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~--~~~--~~~-~h~~ 430 (590)
++.. +..... + +....+..+.+.|++ ..++++......|++|++.... +.. .+. ....
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 433322 1 112334456666644 3556666667789999997654 322 222 2345
Q ss_pred ceeEEEEeCCCCEEEEE-eCCCcEEEEECC--CC--cEEEEeecC---C--CCcccEEEEcCCCCEEEEEEc-CCeEEEE
Q 007757 431 AVNTITFVDSNRRFVTS-SDDKSLRVWEFG--IP--VVIKYISEP---H--MHSMPSISLHPNTNWLAAQSL-DNQILIY 499 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~-s~Dg~I~iwdl~--~~--~~~~~~~~~---~--~~~i~~i~~sp~g~~l~s~s~-dg~I~iw 499 (590)
.-+.+.|+|+++++++. -.++.|.++++. .+ ..+..+... . ......|.++|+|++|+++.. .+.|.+|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 67899999999987655 457789999987 32 222222211 1 124668999999999888764 5789999
Q ss_pred EccCc-eeecccccccCcccccceEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCCeEEEEEe-cCCCCEEEEEE
Q 007757 500 STRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDW--KSCKVFRTLK-CHEGVCIGCEW 569 (590)
Q Consensus 500 d~~~~-~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~--~t~~~~~~l~-~h~~~V~~v~~ 569 (590)
++... ..+.....+... ......++++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 273 ~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 99432 222222222211 23356799999999999887 5678998866 5777655442 23344567765
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=4e-09 Score=107.71 Aligned_cols=259 Identities=15% Similarity=0.102 Sum_probs=160.6
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC----------CCeEEEEECCCCcEEEEccCCCCce---
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIPY--- 388 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~----------Dg~I~vWd~~t~~~~~~~~~~~~~~--- 388 (590)
++|.+.|. ...+.+.++..-..+- .+ ++|||+.|+++.. +..|.+||+.+++.+..+..+..+.
T Consensus 27 ~~v~ViD~-~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDG-EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEEC-CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 89999999 6778877776433332 34 9999998887766 7899999999999999888654433
Q ss_pred -----EEEEecCCCCCcEEEEEEc-CCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 007757 389 -----VVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 389 -----~~~~~~~~~~~~~lvsg~~-dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
.+.+++++. .++++--. +..|.++|+.+++.+.++.-.. ...-...+ +...+ +-+.||......+....
T Consensus 104 ~~~~~~~~ls~dgk--~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 104 GTYPWMTSLTPDNK--TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred cCccceEEECCCCC--EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCC
Confidence 677777653 34444435 8999999999999998886422 11111221 12122 22334444443332211
Q ss_pred EEEEee----cCCCCcc-cEEEEcC-CCCEEEEEEcCCeEEEEEccCceee--cccccccC-----cccccceEEEEEcC
Q 007757 463 VIKYIS----EPHMHSM-PSISLHP-NTNWLAAQSLDNQILIYSTRERFQL--NKKKRFAG-----HIVAGYACQVNFSP 529 (590)
Q Consensus 463 ~~~~~~----~~~~~~i-~~i~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~~-----~~~~~~v~~v~~sp 529 (590)
...... .....++ ..-.+.+ +++++.+... |.|.+.|+...... .....+.. ....+...-+++++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 111100 0000000 0003455 7887777665 99999996442211 11111110 11123333499999
Q ss_pred CCCEEEEEe----------CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEE-EEeCCCcEEEeC
Q 007757 530 DGRFVMSGD----------GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA-TCGWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs----------~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~-s~g~DG~I~iWD 590 (590)
+++.+++.. ..+.|.++|+.+++.+..+.. ...+..++++|++..+|+ +...++.|.+.|
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 999988743 225799999999999999885 346899999996552555 444688888876
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.3e-10 Score=119.55 Aligned_cols=243 Identities=16% Similarity=0.186 Sum_probs=163.6
Q ss_pred cCCCceeEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC
Q 007757 341 GHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~ 419 (590)
.|...-+.|..+|||++++ +|.+--.|++||+....+.. ..+-...++.|.+..+.-.-++.-..|..|-+...- |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF--ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF--ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeee--eecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence 4777889999999999765 66778899999998655433 333333334443333322334444455555543211 1
Q ss_pred ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007757 420 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 420 ~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iw 499 (590)
..- .+ .-...-..++++.-.--|++++....|+-+++..+..+..+.. ....+++|.+++-..+|++|+.+|.|.+|
T Consensus 126 ~hy-~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 126 RHY-RT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred eee-ee-ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceEEEe
Confidence 100 00 0112334566654444455555567788899998887766643 55789999999999999999999999999
Q ss_pred EccCceeeccccc------ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCCCEEEEEEcCC
Q 007757 500 STRERFQLNKKKR------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPL 572 (590)
Q Consensus 500 d~~~~~~~~~~~~------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~ 572 (590)
|.++......+.. ..+......|+++.|+.+|-.+++|..+|.|.|||+++.+++..-. ...-+|..+.|.+.
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 9988665433321 1222233458899999999999999999999999999998876543 22348899999874
Q ss_pred C-CCEEEEEeCCCcEEEeC
Q 007757 573 E-QSKVATCGWDGLIKYWD 590 (590)
Q Consensus 573 ~-~~~l~s~g~DG~I~iWD 590 (590)
+ +..|+|+. ...++|||
T Consensus 283 ~~q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 283 DQQNKVVSMD-KRILKIWD 300 (703)
T ss_pred CCCceEEecc-hHHhhhcc
Confidence 3 34566654 56789997
No 245
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=4.3e-10 Score=115.28 Aligned_cols=269 Identities=19% Similarity=0.286 Sum_probs=167.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC-----------CCeEEEE
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----------DKNIKYW 370 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-----------Dg~I~vW 370 (590)
-+-+.|||. |.+|+|-..-| |.+|-- .+...++.+ .|. .|.-+.|||+.++|+|-+. ...|+||
T Consensus 213 etyv~wSP~-GTYL~t~Hk~G-I~lWGG-~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPK-GTYLVTFHKQG-IALWGG-ESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCC-ceEEEEEeccc-eeeecC-ccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 466899999 99999988776 889965 233333333 254 4889999999999998764 2579999
Q ss_pred ECCCCcEEEEccCCCCc----eEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEE
Q 007757 371 DTETGQVIRTFSTGKIP----YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s 446 (590)
|+.+|...+.|...... ..+.|+.++. +++......|.||+..+..++..-.-.-..|....|+|.++.|+-
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdK----y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDK----YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCc----eeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 99999999988773222 2455665542 555555578999987764333222222344555666665554442
Q ss_pred EeCC-----Cc----------------------------------------------------EEEEECCCCcEEEEeec
Q 007757 447 SSDD-----KS----------------------------------------------------LRVWEFGIPVVIKYISE 469 (590)
Q Consensus 447 ~s~D-----g~----------------------------------------------------I~iwdl~~~~~~~~~~~ 469 (590)
=+.. .. +-|+.++....... ..
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve-~v 442 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE-VV 442 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce-ee
Confidence 1100 00 11111111100000 01
Q ss_pred CCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEccC-ceeecccccccCcccccceEEEEEcCCCCEEEEEe---CCCc
Q 007757 470 PHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGK 542 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~dg~ 542 (590)
.....|...+|-|.|+.+++-+.+ .++.+|.+.+ .......+.+. ....+.+.|+|.|++++.+. ..|.
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccc
Confidence 234457788999999888776543 6788888773 22222222222 23456799999999998764 5789
Q ss_pred EEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 007757 543 CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 543 I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
+.++|+.-..+..+-.......+.+.|.| .+++++|++.-+.
T Consensus 519 l~F~D~~~a~~k~~~~~eh~~at~veWDP-tGRYvvT~ss~wr 560 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHFAATEVEWDP-TGRYVVTSSSSWR 560 (698)
T ss_pred eEEEecchhhhhhccCccccccccceECC-CCCEEEEeeehhh
Confidence 99999875333222222223458899999 8889999987543
No 246
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=6.2e-10 Score=119.09 Aligned_cols=200 Identities=12% Similarity=0.129 Sum_probs=127.5
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEE-EEeCCCeEE
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIK 368 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~ 368 (590)
+.+..+...|.+.+|+|+ |+.|+..+.+ ..|.+||+ ..++.. .+....+.+.+..|+|||+.|+ +.+.+|...
T Consensus 189 ~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl-~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 189 QSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDL-ATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred eEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEEC-CCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 445577888999999999 7777766543 35999999 455443 3333445667899999999887 567777766
Q ss_pred EEE--CCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEE--ECCCCceEEEEcccCCceeEEEEeCCCCE
Q 007757 369 YWD--TETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQW--DMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 369 vWd--~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vw--Dl~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
||. +.++.. ..+.. ........|++++. .+++++..++...+| ++.++...... .+........|+|+|++
T Consensus 266 Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~--~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSGL-RRLTQSSGIDTEPFFSPDGR--SIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCCc-EECCCCCCCCcCeEEcCCCC--EEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCE
Confidence 664 555543 33332 22233456666543 444454445555555 55555433222 22333456789999999
Q ss_pred EEEEeCCC---cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC---eEEEEEcc
Q 007757 444 FVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIYSTR 502 (590)
Q Consensus 444 l~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~iwd~~ 502 (590)
|+.++.++ .|.+||+..+... .+.. ........|+|+|++|+..+.++ .+.+.++.
T Consensus 342 Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 342 LAYISRVGGAFKLYVQDLATGQVT-ALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEEEccCCcEEEEEEECCCCCeE-EccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 98877654 5999999877644 3322 22346789999999988887654 35555553
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=2.4e-11 Score=138.38 Aligned_cols=252 Identities=15% Similarity=0.277 Sum_probs=184.8
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
++.+.....++...-|.....+ ..++.+-..|.++.=+|...+.+||+.||.|++|....++.+..+.......+..
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 4455555566666666652222 2233456778889889988999999999999999999999888887665544433
Q ss_pred EecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE---eCCCcEEEEECCCCcEEEEee
Q 007757 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS---SDDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~---s~Dg~I~iwdl~~~~~~~~~~ 468 (590)
.... ..++.+.++..||.|.+|.+. .++....+.|....+.+.|.. ..++++ ++++.+.+||...+.....+.
T Consensus 2257 ~~f~-~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2257 SRFN-HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhc-ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 3333 244678999999999999987 666777788999999999875 556655 457899999986655444555
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
..|.+.++++++.|....|++|+.+|.|++||++..+....++. +. ...++++|+..|.|+||++
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEc
Confidence 67999999999999999999999999999999987655543332 22 3568999999999999999
Q ss_pred CCCeEEEEEec---CCCC--EEEEEEcCCCCCEEEEEeCCCc
Q 007757 549 KSCKVFRTLKC---HEGV--CIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 549 ~t~~~~~~l~~---h~~~--V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
....++.++.. |.+. .+.....-.-...|.+||.||+
T Consensus 2398 s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2398 SEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 98888777753 2221 1112222223457899999985
No 248
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=4e-11 Score=122.28 Aligned_cols=173 Identities=23% Similarity=0.381 Sum_probs=137.1
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC------eeEEEeccCCCceeEEEEecCCCEEEEEeCC
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------KCMRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
-+..|.||+..|..|.--.+ .+-+++++.|.+|++|.+...+ .|..+++.|..+|.++.|-.+-++++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 34678899999999987766 7889999999999999995433 4778899999999999999988887765 7
Q ss_pred CeEEEEECCCCcEEEEcc---CCCCceEEEEecCCCCCcEEEEE-EcCCcEEEEECCCCceEEEEc-----ccCCceeEE
Q 007757 365 KNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYD-----QHLGAVNTI 435 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg-~~dg~I~vwDl~t~~~~~~~~-----~h~~~V~~i 435 (590)
|-|.+||.--++.+.... .......+.+.++-+. +++++| +...+|+++|.+..+.+.+++ +..+.+.++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~-~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDR-HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcc-hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 999999988777665332 2233444555444333 556666 678999999999998777664 344568999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 007757 436 TFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 436 ~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~ 467 (590)
+..+.|++++.+-..|.|.+.|.+++..+..+
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 99999999999999999999999999877644
No 249
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=4.1e-09 Score=111.09 Aligned_cols=258 Identities=16% Similarity=0.139 Sum_probs=169.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
+..++.++.+|.+..+|. .+++.+....... .+.+.-.. .+..++.++.++.|..||.++|+.+..+..........
T Consensus 105 ~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDA-EDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 567888889999999998 5777776654322 22211111 34567778889999999999999988876543321110
Q ss_pred --EecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC----------ce-eEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007757 392 --LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG----------AV-NTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 392 --~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~----------~V-~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
..|.-. ...++++..++.+..+|+++|+.+........ .+ .+..+ .+..+++++.+|.++.||.
T Consensus 182 ~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 182 GSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEEC
Confidence 000001 13578888899999999999987765432110 01 11112 2457888888999999999
Q ss_pred CCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe
Q 007757 459 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
.+++.+...... ...... ..+..+++++.+|.|..+|..++..+.....+.+..... ... .+..|++++
T Consensus 259 ~tG~~~W~~~~~---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss----p~i--~g~~l~~~~ 327 (377)
T TIGR03300 259 RSGRVLWKRDAS---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA----PAV--VGGYLVVGD 327 (377)
T ss_pred CCCcEEEeeccC---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc----CEE--ECCEEEEEe
Confidence 888766554311 112222 246778888899999999998876554332222221111 111 467899999
Q ss_pred CCCcEEEEeCCCCeEEEEEecCCCCEE-EEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 539 GEGKCWFWDWKSCKVFRTLKCHEGVCI-GCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~~h~~~V~-~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.+|.|+++|..+++.+.+++.+...+. +..+. + ..|+.++.||.|..|
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--C-CEEEEEeCCceEEEe
Confidence 999999999999999999987765433 33333 2 358889999999765
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=2.3e-10 Score=125.33 Aligned_cols=200 Identities=14% Similarity=0.209 Sum_probs=159.5
Q ss_pred CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCce--EEEEecCCCCCcEEEEEEcCCcEEEEECCCCce
Q 007757 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~ 421 (590)
..|....+......++.++.+..+.+||...+.....+....... +....-+....-++++|+.-+.|.+|+....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 334445555577789999999999999999888887776654432 333333444557889999999999999984444
Q ss_pred EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
-..+.+|.+.|..+.++.+|+++++.|+|.++++|++.+........-.|...+..++++|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 44678999999999999999999999999999999999887766444579999999999998 9999999999999976
Q ss_pred cCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 502 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
.... + ..+.+|. ...+..++..++...+++++.||.+++|++..
T Consensus 246 ~~~~-l---~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NGTQ-L---EVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccce-e---hhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 5432 2 2556664 34577899999999999999999999999754
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=2.7e-08 Score=101.66 Aligned_cols=252 Identities=11% Similarity=0.117 Sum_probs=162.0
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEE-e---------CCCcEEEEEccCCCeeEEEeccC-------CCceeEEEEe
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSA-G---------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFC 352 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sg-s---------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fs 352 (590)
+.+.++..-..+-- + ++|+ ++.|+.+ + .+..|.+||+ .+.+.+..+.-. ...-..++++
T Consensus 38 ~v~g~i~~G~~P~~-~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~-~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 38 RVLGMTDGGFLPNP-V-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDP-QTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred EEEEEEEccCCCce-e-ECCC-CCEEEEEeccccccccCCCCCEEEEEEC-ccCcEEeEEccCCCchhhccCccceEEEC
Confidence 44555544333332 4 8999 5555555 4 5889999999 688888777532 2234478999
Q ss_pred cCCCEEEEEeC--CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-Cce-EEE---E
Q 007757 353 NDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEI-TQE---Y 425 (590)
Q Consensus 353 pdg~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-~~~-~~~---~ 425 (590)
|||++|+.... +..|.+.|+.+++.+..+..+.....+.... .. +.+-+.||......+.+ ++. ... +
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---Cc--cEEEeecCceEEEEecCCCceEEeeeeee
Confidence 99999998763 6899999999999999988766444444322 21 23444566655544432 221 111 1
Q ss_pred cccCCce-eEEEEeC-CCCEEEEEeCCCcEEEEECCCC-----cEEEEeecC------CCCcccEEEEcCCCCEEEEEE-
Q 007757 426 DQHLGAV-NTITFVD-SNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEP------HMHSMPSISLHPNTNWLAAQS- 491 (590)
Q Consensus 426 ~~h~~~V-~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~------~~~~i~~i~~sp~g~~l~s~s- 491 (590)
.....++ ..-.|.+ +++++.++.. |+|.+.|+... ..+..+... ....+.-++++++++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 1100000 0003455 7777777666 99999996432 222222111 122334499999999888843
Q ss_pred ---------cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEE
Q 007757 492 ---------LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 492 ---------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~t~~~~~~l 557 (590)
..+.|.++|..+...+..+.. ...+..++++|||+ +|++.+ .++.|.++|..+++.+.++
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeC------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 225799999988876654443 23466799999999 777666 5788999999999999988
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=9e-10 Score=115.68 Aligned_cols=277 Identities=13% Similarity=0.163 Sum_probs=189.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC-------C-------eeEEEeccCCCceeEEEEecCCCEEEEEeCC
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-------G-------KCMRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~-------~-------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
.....|+.|+.. ..++++|+.||.++|-.+... + ..-+++.||+..|.-+.|+.+.+.|-++..+
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 345789999998 789999999999999987321 1 1224678999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE-EEcccCCceeEEEEeCCCC
Q 007757 365 KNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~-~~~~h~~~V~~i~~~p~~~ 442 (590)
|.|.||-+-.|........ .....+.++++..+ +..+.....||.|.+=.+...++.. .++ ......+.|+++.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLE 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHH
Confidence 9999999987765443322 22233333343332 2457777788888776665443221 122 12345789999999
Q ss_pred EEEEEeCCCcEEEEECCCCc-------E---EEEeecCCCCcccEEEEc--------CCCCEEEEEEcCCeEEEEEccCc
Q 007757 443 RFVTSSDDKSLRVWEFGIPV-------V---IKYISEPHMHSMPSISLH--------PNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~-------~---~~~~~~~~~~~i~~i~~s--------p~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
.++.+-..|.+.+||....- + ..-........|..+.|. |+...|+++..+|.+.|..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 99999899999999975321 1 111111223346666664 47788999999999888754332
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCC
Q 007757 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 575 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---------g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~ 575 (590)
.....+ -. ...+..+.|+++|.+|++++.+ ..|.++. .-|+.+.+++.....|++++|-. .+-
T Consensus 250 ~~Pvv~--dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg-~gL 321 (1189)
T KOG2041|consen 250 PEPVVV--DT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG-TGL 321 (1189)
T ss_pred CCCeEE--ec----ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC-Cce
Confidence 221111 11 2456678999999999988753 2566665 57888999999999999999976 343
Q ss_pred EEEEEeCCCcEEE
Q 007757 576 KVATCGWDGLIKY 588 (590)
Q Consensus 576 ~l~s~g~DG~I~i 588 (590)
.++. ..|+.|.+
T Consensus 322 riA~-Avdsfiyf 333 (1189)
T KOG2041|consen 322 RIAI-AVDSFIYF 333 (1189)
T ss_pred EEEE-EecceEEE
Confidence 3443 34666654
No 253
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=3.9e-09 Score=100.75 Aligned_cols=259 Identities=22% Similarity=0.330 Sum_probs=172.1
Q ss_pred CCCcEEEEEccCCCeeEE--Ee-ccCCCceeEEEEec---CCC-EEEEEeCCCeEEEEECCCCcEEEEccC---CCC---
Q 007757 320 MDTKVKIWDVVNSGKCMR--TY-MGHSKAVRDISFCN---DGT-KFLTASYDKNIKYWDTETGQVIRTFST---GKI--- 386 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~--~~-~~h~~~V~~l~fsp---dg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~---~~~--- 386 (590)
..|.+.+|++. +.+.+. ++ ..-...+..+.|.. +|. .++-+-.+|.|.++..........+.. ...
T Consensus 44 R~Gkl~Lys~~-d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 44 RSGKLHLYSLE-DMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred eccceEEEeec-ccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe
Confidence 34778899883 333222 11 22345677888875 455 566677789999998765443333322 111
Q ss_pred -ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce--EEEEcccCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCc
Q 007757 387 -PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 387 -~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~--~~~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
..++.+.+.+ .-++++..+|.+.+.+.....+ ++.++.|.-++....|+.. .+.+.+|++|+.+..||++.+.
T Consensus 123 ~~lslD~~~~~---~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 123 EALSLDISTSG---TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeeEEEeeccC---ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 2234444433 3488999999999776665543 4478899999999999864 4578899999999999999554
Q ss_pred -EEEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCC--CEEEEEe
Q 007757 463 -VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGD 538 (590)
Q Consensus 463 -~~~~~~~~~~~~i~~i~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg--~~l~sgs 538 (590)
.+..-...|...|.+|.-+| .+.++++|+.|-.|++||.++..+. .+.+. ..+.|..+..+|.- ++|+++-
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP----l~~~~-v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP----LFKAK-VGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc----cccCc-cccceEEEEecchhhhHHHHHHH
Confidence 33332345777888888776 4789999999999999999864322 12222 34778999999953 3444444
Q ss_pred CCCcEEEEeCCCC--e---EEEEEecCCCCEEEEEEcCCCCCEEEEEe-CCCcEE-Ee
Q 007757 539 GEGKCWFWDWKSC--K---VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIK-YW 589 (590)
Q Consensus 539 ~dg~I~iwd~~t~--~---~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~-iW 589 (590)
.+| .+|-+.... + .+...+.|.+-+..-.|.. ...+|+||+ .|..|+ +|
T Consensus 275 h~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 275 HNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hcC-ceEEEecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeee
Confidence 444 555555443 3 3455667888888888965 456899987 477755 66
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.2e-08 Score=109.04 Aligned_cols=237 Identities=12% Similarity=0.122 Sum_probs=146.7
Q ss_pred cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEE---EEeCC--CeEEEEECCCCcEEEEccCCCCceEEEEecCCC
Q 007757 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL---TASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 397 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~---s~s~D--g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
.|.+.|. ++...+.+......+..-.|+|||+.++ +...+ ..|.+.++.+++..+............|+|++.
T Consensus 166 ~l~~~d~--dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDY--DGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcC--CCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 4555665 4444455555666677889999997532 33333 357788998887655444444444567777653
Q ss_pred CCcEEEEEEcCC----cEEEEECCCC---ceEEEEcccCCceeEEEEeCCCCEEEEEe-CCCcEEEE--ECCC-CcEEEE
Q 007757 398 KQNILLAGMSDK----KIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVW--EFGI-PVVIKY 466 (590)
Q Consensus 398 ~~~~lvsg~~dg----~I~vwDl~t~---~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iw--dl~~-~~~~~~ 466 (590)
.++++...+| .+.+|++..+ ...+....+.+.....+|+|+|+.|+..+ .+|...+| ++.. ......
T Consensus 244 --~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 244 --LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred --EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 4555543333 3444777653 33333333334456789999999888766 35654455 4432 222333
Q ss_pred eecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC---C
Q 007757 467 ISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---E 540 (590)
Q Consensus 467 ~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---d 540 (590)
+.. ....+....|+|+|++|+..+.+ ..|.+||+.++..... ... ...+....|+|||++|+.... .
T Consensus 322 lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L----t~~--~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 322 LTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL----TTS--PENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred ecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc----cCC--CCCccceEECCCCCEEEEEECCCCC
Confidence 332 33456788999999999877654 4699999977643321 111 123445899999998875432 3
Q ss_pred CcEEEEeCCCCeEEEEEecCCCCEEEEEEcC
Q 007757 541 GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 541 g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
..|++||+..++...... ..+.+...+|+|
T Consensus 395 ~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~ 424 (428)
T PRK01029 395 SELYLISLITKKTRKIVI-GSGEKRFPSWGA 424 (428)
T ss_pred ceEEEEECCCCCEEEeec-CCCcccCceecC
Confidence 579999998877654443 455677889988
No 255
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.22 E-value=9.2e-09 Score=108.44 Aligned_cols=258 Identities=13% Similarity=0.106 Sum_probs=168.6
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
+..+++++.+|.|..+|. .+++.+..+.-.......... ++..++.++.++.|..+|..+|+.+.............
T Consensus 65 ~~~v~v~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDA-ETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEc-cCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 568888889999999998 578877766544332222222 56788888999999999999999998876654332211
Q ss_pred EecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCce-----eEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 007757 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V-----~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~ 466 (590)
... ...+++++.++.|+.||.++++.+..+......+ .+.... +..++.+..++.+..+|..++..+..
T Consensus 142 ~v~----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LVA----NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EEE----CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 111 2457778889999999999999888775433211 111222 24677888889999999988876543
Q ss_pred eecCCCC---c---ccEEEEcC--CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe
Q 007757 467 ISEPHMH---S---MPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 467 ~~~~~~~---~---i~~i~~sp--~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
....... . +..+.-+| .+..+++++.+|.+..||..++....... ... . ......+..|+.++
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~~-----~---~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-ASS-----Y---QGPAVDDNRLYVTD 286 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cCC-----c---cCceEeCCEEEEEC
Confidence 3211100 0 00010011 35678888889999999998876543322 111 1 11122567888888
Q ss_pred CCCcEEEEeCCCCeEEEEEecC-CCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 539 GEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+|.|+.+|..+++.+...... .....+... .+..|++++.+|.|.+||
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEE
Confidence 9999999999999988766322 222222222 234788889999998875
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=7.9e-10 Score=121.18 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=143.2
Q ss_pred cEEEEEEcCCcEEEEECCCCceEEEEcccCC----ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcc
Q 007757 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLG----AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 475 (590)
Q Consensus 400 ~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~----~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i 475 (590)
..++.++.+..+.+||...+.....+..... ...-+-++++.-++++|+--+.|.+|+........ ...+|.+.|
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~i 178 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSI 178 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecccCCce
Confidence 4688888899999999988877666543221 12223344566688999999999999986333333 234799999
Q ss_pred cEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 007757 476 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 476 ~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
..+.++-+|.++++.|.|..+++|++.+..... ...-+| ...+..++|.|+ .+++++.|.+.++|+. .+..+.
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgH--saRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~ 251 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGH--SARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLE 251 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC--cccccc--cceeEEEEeccc--eeEEeccceEEEEEec-ccceeh
Confidence 999999999999999999999999998876553 233345 677888999998 9999999999999975 445555
Q ss_pred EEecCCC-CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 556 TLKCHEG-VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 556 ~l~~h~~-~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+..|.+ .|..++..+ +...++|++.||.|++||
T Consensus 252 ~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhh
Confidence 7888864 789999988 788999999999999996
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=4.4e-09 Score=109.17 Aligned_cols=209 Identities=18% Similarity=0.218 Sum_probs=157.1
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCcEEEEccCC----CCceEEEEecC-----------------CCCCcEEEEEEcCCcE
Q 007757 353 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTG----KIPYVVKLNPD-----------------DDKQNILLAGMSDKKI 411 (590)
Q Consensus 353 pdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~----~~~~~~~~~~~-----------------~~~~~~lvsg~~dg~I 411 (590)
|...+||....||.+++|++.+++....|... ....+..|.-. .....+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999999888777542 22222222211 1134578889999999
Q ss_pred EEEECCCCceEEEEc--ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEE
Q 007757 412 VQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 412 ~vwDl~t~~~~~~~~--~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s 489 (590)
.+|++..+++...+. .|.+.|+++.++.+-..|.+++.|+.+..|+......++... .....+.+++++|+++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCCEEEe
Confidence 999999999888875 699999999999999999999999999999998887776664 46667899999999999998
Q ss_pred EEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCC-----CCEEEEEe-CCCcEEEEeCCC----CeEEEEEec
Q 007757 490 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-----GRFVMSGD-GEGKCWFWDWKS----CKVFRTLKC 559 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-----g~~l~sgs-~dg~I~iwd~~t----~~~~~~l~~ 559 (590)
++ ++|.+||+.++..+ ..|.|| .+.|.++.|.-+ |.+++++. .+..+.+|-+.. ......+..
T Consensus 162 as--~~ik~~~~~~kevv---~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~ 234 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVV---ITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTV 234 (541)
T ss_pred cc--ceEEEEEccCceEE---EEecCC--CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeecc
Confidence 76 78999999987655 667888 677888888776 77776554 455577775533 333444554
Q ss_pred CCCCEEEEEE
Q 007757 560 HEGVCIGCEW 569 (590)
Q Consensus 560 h~~~V~~v~~ 569 (590)
.+-+|..=.+
T Consensus 235 ~dipv~~ds~ 244 (541)
T KOG4547|consen 235 PDIPVTSDSG 244 (541)
T ss_pred CCCCeEeccc
Confidence 4444443333
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.18 E-value=3.9e-08 Score=115.36 Aligned_cols=246 Identities=10% Similarity=0.143 Sum_probs=164.1
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc--C------------CCceeEEEEecCCCEEEEEeC-CCeE
Q 007757 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG--H------------SKAVRDISFCNDGTKFLTASY-DKNI 367 (590)
Q Consensus 303 ~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--h------------~~~V~~l~fspdg~~l~s~s~-Dg~I 367 (590)
..+++.+.++.++++-+..+.|++||. .+..+..+.+ . -.....|+++++++.|+++.. .+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~--~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL--DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC--CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 467888765778888888999999997 4444444432 1 123578999998887666554 5789
Q ss_pred EEEECCCCcEEEEccC-----------------CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc---
Q 007757 368 KYWDTETGQVIRTFST-----------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--- 427 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~--- 427 (590)
+++|+.++........ -..+..+++.+. ++.++++...++.|++||..++... .+.+
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~ 725 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY 725 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence 9999987654322110 113445666653 3467888888999999999877543 2211
Q ss_pred ------------cCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEee-c-------------------CCCCc
Q 007757 428 ------------HLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYIS-E-------------------PHMHS 474 (590)
Q Consensus 428 ------------h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~-~-------------------~~~~~ 474 (590)
.....+.|+++|++. .+++-+.++.|++||+.++....... . .....
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 112456799999988 45566677999999997654321110 0 00112
Q ss_pred ccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccc-cC----c---ccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007757 475 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AG----H---IVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 475 i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~----~---~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
...++++++|.++++.+.++.|++||..++........- .+ . ..-.....++++++|+++++-+.++.|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 458899999998888888999999998765433211100 00 0 001235579999999988888899999999
Q ss_pred eCCCCeE
Q 007757 547 DWKSCKV 553 (590)
Q Consensus 547 d~~t~~~ 553 (590)
|+.+++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9988765
No 259
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.18 E-value=7.1e-09 Score=110.79 Aligned_cols=201 Identities=15% Similarity=0.164 Sum_probs=133.8
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEE-EeCCC--e
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDK--N 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg--~ 366 (590)
+.+..+...+.+.+|+|+ |++|+.++.+ ..|++|++ .++... .+..+...+.+++|+|+|+.|+. .+.++ .
T Consensus 183 ~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~-~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 183 QTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDL-ATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred EEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEEC-CCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 445567778999999999 7877776543 47999999 444332 33445566778999999987764 44444 5
Q ss_pred EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC--cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE
Q 007757 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
|.+||+.++................|.+++ ..++++....+ .|+++|+.+++.. .+..+...+..+.|+|++++|
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEE
Confidence 899999887655443333333344566543 23444443333 6888898877643 343455667788999999999
Q ss_pred EEEeCCC---cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC---eEEEEEcc
Q 007757 445 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIYSTR 502 (590)
Q Consensus 445 ~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~iwd~~ 502 (590)
+.++.++ .|.+||+..... ..+.. ........|+|++++|+..+.++ .+.+++..
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGE-RVLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCe-EEccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 9888776 789999877543 33322 12345568999999988887764 34555543
No 260
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.16 E-value=2.7e-08 Score=101.55 Aligned_cols=273 Identities=13% Similarity=0.186 Sum_probs=181.7
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCC---------------cEEEEEccCCCeeEEEeccCCCc--ee-EEEEecCCCEEEEE
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDT---------------KVKIWDVVNSGKCMRTYMGHSKA--VR-DISFCNDGTKFLTA 361 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg---------------~I~iWd~~~~~~~~~~~~~h~~~--V~-~l~fspdg~~l~s~ 361 (590)
..|.-+.|+|. +++|.+-+..+ .+.+||+ .++..+..+.+...+ .. -+.|+.+..++|-.
T Consensus 72 ~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~-~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 72 PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI-ASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred CCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEec-cCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 34888899999 89999876644 4899999 688899888877666 55 78888888777654
Q ss_pred eCCCeEEEEECCCCcEE-EEccCC--CCceEEEEecCCCCCcEEEE-----EEcCCcEEEEECCCCceEEEEcccCCcee
Q 007757 362 SYDKNIKYWDTETGQVI-RTFSTG--KIPYVVKLNPDDDKQNILLA-----GMSDKKIVQWDMNTKEITQEYDQHLGAVN 433 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~-~~~~~~--~~~~~~~~~~~~~~~~~lvs-----g~~dg~I~vwDl~t~~~~~~~~~h~~~V~ 433 (590)
....+.|+++ ++... ..+..- .......++|.++. ..|+. +...+.+++|.+..+..+.+-.-....-.
T Consensus 150 -v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~-~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 150 -VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH-DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred -ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCC-ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 3467999997 33321 122211 22334445554332 22332 35678899999987766555433333445
Q ss_pred EEEEeCCCCEEEEEe-----------CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE--cCCeEEEEE
Q 007757 434 TITFVDSNRRFVTSS-----------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIYS 500 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s-----------~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s--~dg~I~iwd 500 (590)
.+.|.+.|.+|++-- ....++|++++........ ...++|...+|.|.++.|++.+ ..-.+.++|
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecc
Confidence 688888888765421 2356888888743332222 4578999999999988776655 678899999
Q ss_pred ccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEE-EEecCCCCEEEEEEcCCCCCE
Q 007757 501 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWDWKSCKVFR-TLKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~---dg~I~iwd~~t~~~~~-~l~~h~~~V~~v~~sp~~~~~ 576 (590)
++...... ... ..-..+.|||.+++++.++- .|.|-+||......+. .+.+.. ..-|.|+| ++++
T Consensus 305 lr~Nl~~~---~Pe-----~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wsp-d~qF 373 (561)
T COG5354 305 LRGNLRFY---FPE-----QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSP-DGQF 373 (561)
T ss_pred cccceEEe---cCC-----cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccC-CceE
Confidence 98752221 111 11224789999999988654 5789999987655443 666543 46688999 6666
Q ss_pred EEEEeC------CCcEEEeC
Q 007757 577 VATCGW------DGLIKYWD 590 (590)
Q Consensus 577 l~s~g~------DG~I~iWD 590 (590)
+.+... |..|+|||
T Consensus 374 ~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 374 YDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred EEecCCCcccccCcceEEEE
Confidence 655432 78899996
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.5e-08 Score=108.82 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=129.3
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEE-EeCCC--e
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDK--N 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg--~ 366 (590)
+.+..|...+...+|+|+ |+.|+..+.+ ..|.+|++ ..+.. ..+....+.+....|+|+|+.|+. .+.+| .
T Consensus 192 ~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l-~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 192 VTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNL-DTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred eEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEEC-CCCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 345567788999999999 7777655533 36888998 44433 233333445667999999998874 44454 6
Q ss_pred EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC--cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE
Q 007757 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
|.+||+.++................|++++ ..++++...++ .|+++|+.+++..... ..........|+|+++.|
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEE
Confidence 888899988765433333333345566654 24555544443 5888888887644322 122233457899999999
Q ss_pred EEEeCCC---cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEccC
Q 007757 445 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRE 503 (590)
Q Consensus 445 ~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~ 503 (590)
+..+.++ .|.+||+.++.. ..+... .......|+|+|++++..+.+ ..|.++++..
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~-~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSV-RILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEccCCceEEEEEECCCCCE-EEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 8776533 588899887654 333322 223356899999998887654 3466666654
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=7.7e-09 Score=106.67 Aligned_cols=249 Identities=10% Similarity=0.177 Sum_probs=160.1
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCC--CEEEE-----EeCCCeEEEEECCCC
Q 007757 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG--TKFLT-----ASYDKNIKYWDTETG 375 (590)
Q Consensus 303 ~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg--~~l~s-----~s~Dg~I~vWd~~t~ 375 (590)
.++.|+++ . .|+.=-..+.+++|++.+....... -|...|+.+.++|.+ ..+++ .+.-+.|+||.....
T Consensus 129 W~~qfs~d-E-sl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSID-E-SLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccc-h-hhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 57788887 3 3333333567999998543333333 367889999999963 33432 355678999987633
Q ss_pred cEEEEccC----CCCceEEEEecCCCCCcEEEEEEc-----------CCcEEEEECCCCceEEEEcccCCceeEEEEeCC
Q 007757 376 QVIRTFST----GKIPYVVKLNPDDDKQNILLAGMS-----------DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 376 ~~~~~~~~----~~~~~~~~~~~~~~~~~~lvsg~~-----------dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
.....+.. ......+.|..-+ ..+|+..+. ...++++++......-.+ .-.++|.+++|+++
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~g--t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLG--TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPS 281 (566)
T ss_pred cccchhhhccccccceeEEEeccCC--ceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCC
Confidence 22221111 1122234444333 345544433 246888888833333333 35799999999999
Q ss_pred CCEEEEE--eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEccCceeecccccccC
Q 007757 441 NRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 441 ~~~l~s~--s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~ 515 (590)
++.|+++ -.-..+.|||++.. .+..+ ..++-.++-|+|.|++|+.++.+ |.|-|||..+...+.....
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr~~-~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--- 354 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLRGK-PVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--- 354 (566)
T ss_pred CCEEEEEEecccceEEEEcCCCC-EeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---
Confidence 9887665 45678999998644 33333 44567889999999999998866 7899999988655533332
Q ss_pred cccccceEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcC
Q 007757 516 HIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
...+-+.|+|||++++++.. |..++||+. +|.++..-.-.. ....+.|-|
T Consensus 355 ----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 355 ----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred ----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeee
Confidence 23345899999999998875 677999996 555544322111 466777776
No 263
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.2e-08 Score=108.58 Aligned_cols=212 Identities=14% Similarity=0.201 Sum_probs=151.4
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCC-----------CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEec--
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKY-----------GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-- 353 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~-----------g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-- 353 (590)
..-+.++++.-|...|+.++|.|-. .-+|+++...|.|.|||. ..+..+..+..|..+|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~-~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF-VLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe-hhhhhhhhhcCCCcchhheeeeecc
Confidence 3457888899999999999999842 236788888999999999 57777777888999999999987
Q ss_pred -CC-CEEEEEeCCCeEEEEECCCCcEEEEccCCCCce-EEEEecCCCCCcEEEEEEcCCcEEEEECC-C------CceEE
Q 007757 354 -DG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMN-T------KEITQ 423 (590)
Q Consensus 354 -dg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~vwDl~-t------~~~~~ 423 (590)
+. ..|+.-....+|.+|++.+|+....+...+.+. |+.+.|.+. ..+..-+..|.+.+-+.- . ++..+
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 34 466666777899999999999999887766554 477777654 345555556666665542 1 22222
Q ss_pred EEcccCC----------------c---------eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEE
Q 007757 424 EYDQHLG----------------A---------VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 478 (590)
Q Consensus 424 ~~~~h~~----------------~---------V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i 478 (590)
.-..|.. . .-.++|+|.-+.++.......+.++|++-..++..+.. ..+.+.-+
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi-er~~akfv 278 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI-ERGGAKFV 278 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe-ccCCccee
Confidence 2222222 0 11245677766666666778899999988888777754 44455666
Q ss_pred EEcCCC--CEEEEEEcCCeEEEEEcc
Q 007757 479 SLHPNT--NWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 479 ~~sp~g--~~l~s~s~dg~I~iwd~~ 502 (590)
.+-|++ ..|++...||.+.+|-.+
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEee
Confidence 776654 578999999999998654
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.14 E-value=1.5e-09 Score=105.56 Aligned_cols=246 Identities=15% Similarity=0.266 Sum_probs=176.4
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEE-CCCCcEEEEccC--CCCceEEEEecCCCCCcEEEEEEcCCc
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD-TETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd-~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
.+++.+.||...|++...-|-..-+++.+.|.+++||- .+.++.-..+.. +....++..... ...|++|-..|.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e---~~~L~vg~~ngt 91 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE---SRRLYVGQDNGT 91 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc---ceEEEEEEecce
Confidence 45667889999999999999888899999999999994 344554444433 333444444443 367999999999
Q ss_pred EEEEECC----CCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCE
Q 007757 411 IVQWDMN----TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 411 I~vwDl~----t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
+.-+.+. .....+.+..|...|..+.|+-...++++++.|..+.---.+.+..+....... .-+++.+.-. +
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~--~ 167 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL--Y 167 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE--E
Confidence 9998664 445566777899999999999989999999999887543334333222111000 0111111111 5
Q ss_pred EEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEecCCCCEE
Q 007757 487 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCI 565 (590)
Q Consensus 487 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~-~~~l~~h~~~V~ 565 (590)
...|...|.|.+-.+... .+..+..+.+| .+.+.+++|.+..+.|++|..|..+.+||+--.+- ...+.+|...|.
T Consensus 168 ~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQN-GCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEecccccceEEEEEeec-CCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 566666777777665432 23445667777 56788899999999999999999999999965543 456778999998
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 566 GCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 566 ~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+...+ -...+++++.||.|.+||
T Consensus 245 ~l~~~~-~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 245 ALSYAQ-HTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhhhh-hheeeeeccCCCeEEEEe
Confidence 888877 677899999999999997
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.13 E-value=1.8e-08 Score=95.13 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=157.8
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEec-----CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc--eEEEEe
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLN 393 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-----dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~--~~~~~~ 393 (590)
...+-+|+++...+.+..+. ..+.|.| ...+|+.|+..|...+|...+.+....+-..+.. ..+.-.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 34577888865443332221 3344544 3458999999999999999877654333211111 111111
Q ss_pred cCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEeecCC
Q 007757 394 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPH 471 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~~~ 471 (590)
. +...-+..++.|.++++.++.-+..........-.++++.++++++++++.++...|..|.+.... ..+....+.
T Consensus 125 c--d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 125 C--DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred c--ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 1 111336777788888888776553322221111238899999999999999999999999986532 223223344
Q ss_pred CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC--EEEEEeCCCcEEEEeCC
Q 007757 472 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~ 549 (590)
...-.+..|+.....+|++..||.+.|||++....+............+.+..+.|++.|. +|+..-.-+.+.+.|++
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 5556788999999999999999999999998755443333332233578888899998765 35555566789999999
Q ss_pred CCeEEEEEec-------CC-CCEEEEEEcCCC
Q 007757 550 SCKVFRTLKC-------HE-GVCIGCEWHPLE 573 (590)
Q Consensus 550 t~~~~~~l~~-------h~-~~V~~v~~sp~~ 573 (590)
+++-...+.. |. ..|....|+..+
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCC
Confidence 9876655532 22 237777777633
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.6e-08 Score=105.16 Aligned_cols=191 Identities=14% Similarity=0.203 Sum_probs=146.2
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc---CCCceeEEEEe--------------------cCCCEEEEEeCCC
Q 007757 309 PKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRDISFC--------------------NDGTKFLTASYDK 365 (590)
Q Consensus 309 p~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~---h~~~V~~l~fs--------------------pdg~~l~s~s~Dg 365 (590)
|....++|....||.++||+. ..++....|.. -++..++..|. .+...++-|...|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t-~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDT-AKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEc-cCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 344789999999999999999 45554444432 23334444442 2344677888899
Q ss_pred eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEE
Q 007757 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
.|.++++..|+....+..+.....+....+..+...|.+++.|+.+..|+......++.+......+.+++.+|++..++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 99999999999999988544333222223334456899999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC-----CCEEEEEE-cCCeEEEEEccC
Q 007757 446 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-----TNWLAAQS-LDNQILIYSTRE 503 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-----g~~l~s~s-~dg~I~iwd~~~ 503 (590)
+++ ++|++||+.+.+.+.++. +|.++|.++.|--. |.+|+++. .+..|.+|-+..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 987 689999999999998886 69999999999876 66666543 445577776544
No 267
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=5.7e-10 Score=127.45 Aligned_cols=193 Identities=12% Similarity=0.247 Sum_probs=144.8
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec-cCCCceeEEEEecCCCEEEEEeCCCeEEEEECC
Q 007757 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 295 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
++.|-..|.++.=+|. ..+.+||+.||.|++|... .+..+..+. .-...|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~-~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWG-HGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCC-CceEEecCCCceEEEEecc-CCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 3445667888888888 7899999999999999984 444444432 334889999999999999999999999999987
Q ss_pred CCcEEEEccCCCC-ceEEEEecCCCCCcEEEEEE---cCCcEEEEECCCC---ceEEEEcccCCceeEEEEeCCCCEEEE
Q 007757 374 TGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGM---SDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 374 t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~---~dg~I~vwDl~t~---~~~~~~~~h~~~V~~i~~~p~~~~l~s 446 (590)
.+.....+++.. ..-+.|.. .++++.+ .++.+.+||..-. .++. ..|.+.++++++.|....|++
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred -CcceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEe
Confidence 344434433322 22222322 2344433 4688999997532 2333 679999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec
Q 007757 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
|+.+|.|++||++..+.+..+.. ++ ...+|++++..|.|+||++.....+.
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhh
Confidence 99999999999988877665532 44 67799999999999999998754443
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.10 E-value=2.7e-08 Score=101.57 Aligned_cols=273 Identities=16% Similarity=0.207 Sum_probs=179.6
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC-----------
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK----------- 365 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg----------- 365 (590)
.-.-++..++|+|. |.+|++....| |.+|.-....++++.. | ..|..+.|+|.+++|.+-+..+
T Consensus 30 ~~~~p~~~~~~SP~-G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 30 SENWPVAYVSESPL-GTYLFSEHAAG-VECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccCcchhheeecCc-chheehhhccc-eEEccccchhheeeee--c-CCceecccCcccceeeeeccCCccChhhccCCc
Confidence 36678999999999 99998877654 8999874444443332 3 4699999999999999876533
Q ss_pred ----eEEEEECCCCcEEEEccCCCCc---e-EEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE-EEcc-cCCceeEE
Q 007757 366 ----NIKYWDTETGQVIRTFSTGKIP---Y-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQ-HLGAVNTI 435 (590)
Q Consensus 366 ----~I~vWd~~t~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~-~~~~-h~~~V~~i 435 (590)
.+.+||+.+|.++..+...... + .+.|+.++. +++--....++++++ ++.... .+.. ....|...
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~----y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK----YVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecch----hhhhhccCeEEEEec-CCccccCchhhccccceeeE
Confidence 5999999999999998765444 3 566766553 233234567999997 433221 1111 13567888
Q ss_pred EEeCCCC--EEEE-----EeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-----------cCCeEE
Q 007757 436 TFVDSNR--RFVT-----SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-----------LDNQIL 497 (590)
Q Consensus 436 ~~~p~~~--~l~s-----~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-----------~dg~I~ 497 (590)
.|+|.++ .|+. ....+++++|.+.....+..... ....-..+.|++.|++|++-- ....++
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-EeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 8888643 3332 45678999999986665544322 222335678899999876542 124577
Q ss_pred EEEccCceeecccccccCcccccceEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCC
Q 007757 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS--GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 575 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s--gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~ 575 (590)
|+++........ . ...+.|..++|.|.++.+++ |-..-.+.++|++.. +... ...+.=..+.|+| ..+
T Consensus 259 l~~~~e~~i~V~-~-----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r 328 (561)
T COG5354 259 LLRITERSIPVE-K-----DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HER 328 (561)
T ss_pred EEeeccccccee-c-----cccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-ccc
Confidence 787763321111 1 12466788999998887654 446788999998776 3322 2334445677888 566
Q ss_pred EEEEEeCC---CcEEEeC
Q 007757 576 KVATCGWD---GLIKYWD 590 (590)
Q Consensus 576 ~l~s~g~D---G~I~iWD 590 (590)
+++.+|-| |.|-+||
T Consensus 329 ~il~agF~nl~gni~i~~ 346 (561)
T COG5354 329 YILFAGFDNLQGNIEIFD 346 (561)
T ss_pred EEEEecCCccccceEEec
Confidence 77777665 4566665
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=2.3e-08 Score=106.76 Aligned_cols=219 Identities=11% Similarity=0.026 Sum_probs=129.0
Q ss_pred CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC--CcEEEEECCCCceEEEEcccCCceeEEEEeCCCC
Q 007757 365 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
..|.+.|...+..............-.|+|++....++++...+ ..|++.++.+++..+.. ...+......|+|+|+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCC
Confidence 46777787766554433333444556788876533344455444 46888899887644332 3445556789999999
Q ss_pred EEEEEeC-CC----cEEEEECCCC--cEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEE--EccCc-eeecccc
Q 007757 443 RFVTSSD-DK----SLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIY--STRER-FQLNKKK 511 (590)
Q Consensus 443 ~l~s~s~-Dg----~I~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iw--d~~~~-~~~~~~~ 511 (590)
.|+..+. +| .+.+|++... .....+...........+|+|+|+.|+..+ .+|...+| ++... ... .
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~---~ 320 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP---R 320 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce---E
Confidence 9887653 22 3444666542 222333322223446789999999888766 45654454 44321 111 1
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCC--CcE
Q 007757 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD--GLI 586 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D--G~I 586 (590)
.+... ...+....|||||++|+..+.+ ..|++||+.+++...... ....+....|+|++..+++++... +.|
T Consensus 321 ~lt~~--~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 321 LLTKK--YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred EeccC--CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceE
Confidence 12111 1344568999999998866543 469999999887654332 334567899999544444454443 345
Q ss_pred EEeC
Q 007757 587 KYWD 590 (590)
Q Consensus 587 ~iWD 590 (590)
.+||
T Consensus 398 ~~vd 401 (428)
T PRK01029 398 YLIS 401 (428)
T ss_pred EEEE
Confidence 5553
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.08 E-value=7.3e-08 Score=111.13 Aligned_cols=274 Identities=11% Similarity=0.122 Sum_probs=175.9
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE----EccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEEC
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIW----DVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iW----d~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
.....|.++.|.++ ...|+.+..+|.|.+. +. ....+...-.-...|.+++||||+..|+..+.+++|.+-+
T Consensus 73 ~~~~~ivs~~yl~d-~~~l~~~~~~Gdi~~~~~~~~~--~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt- 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLAD-SESLCIALASGDIILVREDPDP--DEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT- 148 (928)
T ss_pred CCCCcEEEEEeccC-CCcEEEEECCceEEEEEccCCC--CCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-
Confidence 34578999999999 7888888999999999 44 2233333334567899999999999999999999988874
Q ss_pred CCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce--------------EEEEcccCCceeEEEEe
Q 007757 373 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--------------TQEYDQHLGAVNTITFV 438 (590)
Q Consensus 373 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~--------------~~~~~~h~~~V~~i~~~ 438 (590)
.+..++....... ...+....++.+...+=..|.=..|+. ...+. +...-..|+|-
T Consensus 149 ~~fd~i~E~~l~~---------~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWR 218 (928)
T PF04762_consen 149 RDFDPISEVPLDS---------DDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWR 218 (928)
T ss_pred ccceEEEEeecCc---------cccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEEC
Confidence 4555555443221 111112223322222211111111111 01122 34456789999
Q ss_pred CCCCEEEEEeC---C---CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc---CCeEEEEEccCceeecc
Q 007757 439 DSNRRFVTSSD---D---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL---DNQILIYSTRERFQLNK 509 (590)
Q Consensus 439 p~~~~l~s~s~---D---g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~~~ 509 (590)
.||.+|++.+- . ..|+||+-. +. +....++-.+--.+++|.|+|++||+... ...|.+|.-+.-..-..
T Consensus 219 GDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF 296 (928)
T PF04762_consen 219 GDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEF 296 (928)
T ss_pred CCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence 99999998874 2 579999954 33 44444455555678999999999998765 34577776543222111
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEecC-CCCEEEEEEcCCCCCEEEEEeCCCcE
Q 007757 510 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV--FRTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~--~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~DG~I 586 (590)
...+ ......+..+.|++|+..|+....|. |.+|-..+..- .+.+... ...+..+.|+|.....|.....+|.+
T Consensus 297 ~l~~--~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 297 TLRF--DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred ecCC--CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 1111 11245678899999999999987665 99999877543 3334322 23455699999877778888777777
Q ss_pred EEe
Q 007757 587 KYW 589 (590)
Q Consensus 587 ~iW 589 (590)
.++
T Consensus 374 ~~~ 376 (928)
T PF04762_consen 374 EIY 376 (928)
T ss_pred EEE
Confidence 654
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=5.9e-08 Score=104.35 Aligned_cols=201 Identities=11% Similarity=0.104 Sum_probs=124.1
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeC-CC--cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEE-EeCCCe--E
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGM-DT--KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKN--I 367 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~-Dg--~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg~--I 367 (590)
.+..+...+.+.+|+|+ |+.|+..+. ++ .|.+||+ ..++. ..+...........|+|||+.|+. .+.+|. |
T Consensus 212 ~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl-~tg~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDI-YTQVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred EeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEEC-CCCCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 44556778999999999 666665543 33 5888888 34433 222222334457899999998875 455664 8
Q ss_pred EEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC--cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEE
Q 007757 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
.+||+.+++...............|++++. .++++...++ .|+++|+.+++..... ..........|+|+|++|+
T Consensus 289 y~~dl~tg~~~~lt~~~~~~~~p~wSpDG~--~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 289 YVVDIATKALTRITRHRAIDTEPSWHPDGK--SLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEE
Confidence 888998887654433333344566666543 4555554444 5777788877654322 2222344578999999988
Q ss_pred EEeCC-C--cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-C--eEEEEEccC
Q 007757 446 TSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRE 503 (590)
Q Consensus 446 s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-g--~I~iwd~~~ 503 (590)
..+.+ + .|.++|+.++... .+... .......|+|+|+.|+..+.+ + .+.+++...
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEEecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 76553 3 4566787766543 33222 122345899999988776654 3 366677643
No 272
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.04 E-value=2e-07 Score=91.28 Aligned_cols=221 Identities=17% Similarity=0.143 Sum_probs=145.9
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEE--EecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCC
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDIS--FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 398 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~--fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
+|+|..||. .+++.+....- ...+.... ..+++..+++++.++.|..||..+|+.+..+..............
T Consensus 2 ~g~l~~~d~-~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--- 76 (238)
T PF13360_consen 2 DGTLSALDP-RTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG--- 76 (238)
T ss_dssp TSEEEEEET-TTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET---
T ss_pred CCEEEEEEC-CCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc---
Confidence 688999998 68888877643 11122222 333567788889999999999999999988876544332222221
Q ss_pred CcEEEEEEcCCcEEEEECCCCceEEEE-cccC---CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCc
Q 007757 399 QNILLAGMSDKKIVQWDMNTKEITQEY-DQHL---GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 474 (590)
Q Consensus 399 ~~~lvsg~~dg~I~vwDl~t~~~~~~~-~~h~---~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~ 474 (590)
..+++++.++.|+.+|..+|+.+... .... .....+.....+..++++..++.|..+|..++..+..........
T Consensus 77 -~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 -GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp -TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred -cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 35777778889999999999998884 3321 111222233337788889889999999999998877765422111
Q ss_pred ---------ccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007757 475 ---------MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 545 (590)
Q Consensus 475 ---------i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i 545 (590)
+..-.+..++ .++.++.++.+..+|+.++..+. .....+ +. .....++..|++++.++.|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~------~~-~~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISG------IY-SLPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-------EC-ECEECCCTEEEEEETTTEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCC------cc-CCceeeCCEEEEEeCCCEEEE
Confidence 1122222234 77777777764444998887543 111211 11 124567888888889999999
Q ss_pred EeCCCCeEEEE
Q 007757 546 WDWKSCKVFRT 556 (590)
Q Consensus 546 wd~~t~~~~~~ 556 (590)
||+.+++.+.+
T Consensus 227 ~d~~tG~~~W~ 237 (238)
T PF13360_consen 227 LDLKTGKVVWQ 237 (238)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCCEEeE
Confidence 99999998764
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=7.7e-09 Score=100.66 Aligned_cols=200 Identities=18% Similarity=0.355 Sum_probs=137.7
Q ss_pred CCeeEEEEcCCC-CCEEEEEeCCCcEEEEEccCCCeeE----------------------------------EEe-ccCC
Q 007757 300 KGVSAIRFFPKY-GHLILSAGMDTKVKIWDVVNSGKCM----------------------------------RTY-MGHS 343 (590)
Q Consensus 300 ~~V~~l~fsp~~-g~~L~sgs~Dg~I~iWd~~~~~~~~----------------------------------~~~-~~h~ 343 (590)
..|..|+|.+++ ...++..+.|.+|++|.+...+... +.+ ..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 469999999873 3466777889999999985322111 111 2578
Q ss_pred CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE-EE--EccCC------CCceEEEEecCCCCCcEEEEEEcCCcEEEE
Q 007757 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IR--TFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~-~~--~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~vw 414 (590)
--|++|.++.|+..++++. |=.|.+|+++--.. .. .++.. ..+....|+|.. .++|+-.++.|.|++.
T Consensus 165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~--cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH--CNVFVYSSSKGTIRLC 241 (433)
T ss_pred eEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH--ccEEEEecCCCcEEEe
Confidence 8899999999999998875 68899999874322 11 11111 123345566643 4789999999999999
Q ss_pred ECCCCceEEE----------------EcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEeecCCC-----
Q 007757 415 DMNTKEITQE----------------YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHM----- 472 (590)
Q Consensus 415 Dl~t~~~~~~----------------~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~----- 472 (590)
|+|...+... +..--..|..+.|+++|+++++-+. -+|++||+.. ..++..+.. |.
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v-h~~lr~k 319 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV-HEYLRSK 319 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee-hHhHHHH
Confidence 9995432111 1122346889999999999988764 6899999943 344444321 21
Q ss_pred -------C---cccEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 473 -------H---SMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 473 -------~---~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
. .-..++|+.++.++++|+..+.+++|++..+
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1 1235789999999999999999999996543
No 274
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.6e-09 Score=103.52 Aligned_cols=256 Identities=16% Similarity=0.196 Sum_probs=187.4
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC-CC-eeEEEeccCCCceeEEEEecCCCEEEEEeC-CCeEEEEECCC
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SG-KCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTET 374 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~-~~-~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~~t 374 (590)
|...|+.+...- .+++.+++.||.++.|.-.. .+ +.+..+..|...|.+++.+-++.++.|.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 777788776554 58999999999999998632 22 455667789999999999999999999877 99999999998
Q ss_pred CcEEEEccCCCCceEEEEecCCCC-C-cEEEEEEcCCcEEEEECCCCc--eEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 375 GQVIRTFSTGKIPYVVKLNPDDDK-Q-NILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~lvsg~~dg~I~vwDl~t~~--~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
-..+.-+.....+..+.|...... - .+.+..-.++.|.++|-.... ....-.-|..+|.++.+++.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 888777777666665555544321 1 233334457899999987653 333345699999999999999999999999
Q ss_pred CcEEEEECCC----CcEEEEe----------ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccc----
Q 007757 451 KSLRVWEFGI----PVVIKYI----------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR---- 512 (590)
Q Consensus 451 g~I~iwdl~~----~~~~~~~----------~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~---- 512 (590)
|.|.-|.... +..-..+ .........++.|+|++..+.+-+.|..|+++..+++.....+..
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998762 1110001 012344578999999999999999999999999887654322111
Q ss_pred -------------------------ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 007757 513 -------------------------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 513 -------------------------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
+.-+ ....-+.+.|...|++|+-|+-=| |++.++.++.+++.+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~-~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKH-GSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhh-cCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 0001 112234578999999999988765 899999988877665
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=2.8e-07 Score=108.25 Aligned_cols=239 Identities=14% Similarity=0.153 Sum_probs=153.4
Q ss_pred eEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEccC-C--------------CCceEEEEecCCCCCcEEEEEEcCCc
Q 007757 347 RDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFST-G--------------KIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 347 ~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
..+++++. ++.+++-+.++.|++||... ..+..+.. + ..+..+++.+.+ ..++++-..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g--n~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK--NLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC--CEEEEEeCCCce
Confidence 46788874 66777777789999999864 44443322 1 123455555532 234555555678
Q ss_pred EEEEECCCCceEEEEccc-----------------CCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeec---
Q 007757 411 IVQWDMNTKEITQEYDQH-----------------LGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISE--- 469 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~h-----------------~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--- 469 (590)
|+++|+.++.. .++.+- ......++++| ++..+++.+.++.|++||...+........
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 99999887653 332110 12336799999 566677778889999999876654322110
Q ss_pred ----------CCCCcccEEEEcCCCCEEE-EEEcCCeEEEEEccCceeeccc----------ccccCc------ccccce
Q 007757 470 ----------PHMHSMPSISLHPNTNWLA-AQSLDNQILIYSTRERFQLNKK----------KRFAGH------IVAGYA 522 (590)
Q Consensus 470 ----------~~~~~i~~i~~sp~g~~l~-s~s~dg~I~iwd~~~~~~~~~~----------~~~~~~------~~~~~v 522 (590)
........|+++|++.+|+ +-+.++.|++||+.++...... ..+... ......
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0112356799999998555 4455689999998764321000 000000 001123
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-------------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-------------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-------------~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
..++++++|.++++-..+++|++||..++....... +.-.....+++++ ++.++++-+.+++|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 468999999988888899999999998877654321 1112467899999 66788998999999999
Q ss_pred C
Q 007757 590 D 590 (590)
Q Consensus 590 D 590 (590)
|
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 7
No 276
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=2.3e-08 Score=96.05 Aligned_cols=271 Identities=20% Similarity=0.319 Sum_probs=168.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC----eeEEEeccCC------------CceeEEEEecCC--CEEEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG----KCMRTYMGHS------------KAVRDISFCNDG--TKFLT 360 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~----~~~~~~~~h~------------~~V~~l~fspdg--~~l~s 360 (590)
...|+++.|... |.+|++|...|.|.+|.-.... +....+++|. ..|..+.|..++ ..|+.
T Consensus 26 ad~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 345899999988 9999999999999999864433 2233456664 347888887744 46777
Q ss_pred EeCCCeEEEEECCCCcEEEEccC----------CCCceE---EEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-c
Q 007757 361 ASYDKNIKYWDTETGQVIRTFST----------GKIPYV---VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-D 426 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-~ 426 (590)
.+.|.+|++|.+........-.. +.+... +..-.. .....++++. +.+.+ .
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl-s~hd~iiaa~--------------p~rvyaN 169 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL-SEHDEIIAAK--------------PCRVYAN 169 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc-cccceEEEec--------------cceeccc
Confidence 88999999999865432111100 000000 000000 0001111111 11222 4
Q ss_pred ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--CCC-----CcccEEEEcCC-CCEEEEEEcCCeEEE
Q 007757 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE--PHM-----HSMPSISLHPN-TNWLAAQSLDNQILI 498 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--~~~-----~~i~~i~~sp~-g~~l~s~s~dg~I~i 498 (590)
.|..-|++|.|+.+...++++ +|-.|.+|++........+.. |+. .-|++..|||. ...+...+..|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 688889999999888777765 467899999876533322221 232 24788899996 456777788899999
Q ss_pred EEccCcee-ecccccccCc----------ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEecCCC----
Q 007757 499 YSTRERFQ-LNKKKRFAGH----------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEG---- 562 (590)
Q Consensus 499 wd~~~~~~-~~~~~~~~~~----------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~---- 562 (590)
-|++.... ....+.+... .....|..+.|+++|+||++-+.- +|.|||+.. ..++.++..|..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHH
Confidence 99984321 1111111110 012346789999999999988754 799999976 456777765531
Q ss_pred --------CE---EEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 563 --------VC---IGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 563 --------~V---~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
.| ..+.|+- +...+.+|+.....-|
T Consensus 328 l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgi 363 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGI 363 (460)
T ss_pred HHhhhhccceeeeEEEEecC-Ccccccccccccceee
Confidence 22 3467776 4556777776655444
No 277
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.3e-06 Score=84.65 Aligned_cols=266 Identities=11% Similarity=0.199 Sum_probs=170.9
Q ss_pred CCcEEEEEccCC-Ce-eEEEeccCCCceeEEEEecCCCEEEEEeCC---CeEEEEECCC--CcEE--EEc-cCCCCceEE
Q 007757 321 DTKVKIWDVVNS-GK-CMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTET--GQVI--RTF-STGKIPYVV 390 (590)
Q Consensus 321 Dg~I~iWd~~~~-~~-~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g~I~vWd~~t--~~~~--~~~-~~~~~~~~~ 390 (590)
+.-|++|++... ++ ....+..+...++-|+|+|++++|.++-.+ |.|..|.++. |... ... ..+..+..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 466999999522 22 122334567788999999999999988654 7788887764 4432 222 234444556
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCC-CceEE--EEcccCCc----------eeEEEEeCCCCEEEEEeC-CCcEEEE
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQ--EYDQHLGA----------VNTITFVDSNRRFVTSSD-DKSLRVW 456 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t-~~~~~--~~~~h~~~----------V~~i~~~p~~~~l~s~s~-Dg~I~iw 456 (590)
++..++ +.++.+....|.|.++-++. |.+.. ....|.+. +.+..+.|++++|++.+- --.|.+|
T Consensus 95 svd~~g--~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDEDG--RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCCC--CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 665543 35555556679999999865 43221 12235555 889999999999988753 2358999
Q ss_pred ECCCCcEEEEe--ecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCc-eeecccc---ccc-CcccccceEEEEEc
Q 007757 457 EFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRER-FQLNKKK---RFA-GHIVAGYACQVNFS 528 (590)
Q Consensus 457 dl~~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~-~~~~~~~---~~~-~~~~~~~v~~v~~s 528 (590)
++..+.....- ........+.|.|||++++..+.+ .+++|.+|..... ..+..++ .+. ..........|.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 99755433211 113455678999999999887665 5899999998763 2222221 111 11123445678999
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCC--CeE--EEEEecCCCCEEEEEEcCCCCCEEEEEeCCC-cEEEe
Q 007757 529 PDGRFVMSGDG-EGKCWFWDWKS--CKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWDG-LIKYW 589 (590)
Q Consensus 529 pdg~~l~sgs~-dg~I~iwd~~t--~~~--~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG-~I~iW 589 (590)
+||++|.++.. ...|.+|.+.. +++ +.....+....+...|++ ++++|+.++.++ .|.+|
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEE
Confidence 99999998863 34688887643 332 223334455578999999 677777777654 45554
No 278
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=6.4e-07 Score=88.48 Aligned_cols=223 Identities=19% Similarity=0.189 Sum_probs=145.5
Q ss_pred EEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc
Q 007757 348 DISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 348 ~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~ 426 (590)
++.|.+ ++.++++-...+.|..|+..++.... +.... +..+.+.... ..++++.. +.+.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~---g~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD---GRLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT---SEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC---CEEEEEEc-CceEEEecCCCcEEEEee
Confidence 578888 67777777678999999998876644 33333 4445555222 34555555 445666999886544433
Q ss_pred c-----cCCceeEEEEeCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEE-EEEc
Q 007757 427 Q-----HLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSL 492 (590)
Q Consensus 427 ~-----h~~~V~~i~~~p~~~~l~s~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-s~s~ 492 (590)
. .....+.+++.++|+..++.... |.|..++.. ....... . .......|+|+|+++.|+ +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-D-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-E-EESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-c-CcccccceEECCcchheeecccc
Confidence 2 34568899999999977776644 557777776 3333322 2 345568999999999776 4566
Q ss_pred CCeEEEEEccCcee-ecccccc-cCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEc
Q 007757 493 DNQILIYSTRERFQ-LNKKKRF-AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 493 dg~I~iwd~~~~~~-~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~s 570 (590)
.+.|..|++..... +.....+ ......+..-.+++..+|++.++....+.|.+++.. |+++..+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 78899999863222 2211212 111112346679999999998888889999999976 99998888776689999995
Q ss_pred -CCCCCEEEEE
Q 007757 571 -PLEQSKVATC 580 (590)
Q Consensus 571 -p~~~~~l~s~ 580 (590)
++...+++|.
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 4334455554
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=5.1e-09 Score=110.62 Aligned_cols=285 Identities=15% Similarity=0.215 Sum_probs=189.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc-CCCceeEEEEecCC--CEEEEEeCCCeEEEEECCC-
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDG--TKFLTASYDKNIKYWDTET- 374 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspdg--~~l~s~s~Dg~I~vWd~~t- 374 (590)
.+++.++..+|. |+-++.++.-| +.+-|+.....+.+-+.. ..-.|-++.|++.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~-grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPS-GRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccc-cchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 467888899999 77788888766 456677555555554432 12357788888843 2333333445566888753
Q ss_pred -CcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCc
Q 007757 375 -GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
.+.+.-+..++...+..+.+.+....++++++-|-.+..||+++. ..+..+..-......+.|+-....+++.+..+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 344555555666556666666666689999999999999999986 456666555667788999877667777777889
Q ss_pred EEEEECCCCcEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCC
Q 007757 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
|.+||++.+.........|...|..+.|..- ...+.+++.|++|++||............ . ....+..-.+-|-|
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-t---t~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-T---TNFPIWRGRYLPFG 257 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-c---ccCcceeccccccC
Confidence 9999999877666555567777888877653 34688889999999999865322211111 0 12234444454532
Q ss_pred --CEEEEEe---------CCCcEEEEeCCC-CeEEEEEecCCCCEEEEEEcCCC---------CCEEEEEeCCCcEEEe
Q 007757 532 --RFVMSGD---------GEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLE---------QSKVATCGWDGLIKYW 589 (590)
Q Consensus 532 --~~l~sgs---------~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~---------~~~l~s~g~DG~I~iW 589 (590)
.++.-.- -+.....|+..+ .+++++|.+|...|....|-... .-.|+|-+.|..+++|
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 2222111 122233444443 46799999999999888776422 2369999999999999
No 280
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.98 E-value=4.2e-07 Score=96.41 Aligned_cols=260 Identities=9% Similarity=0.084 Sum_probs=165.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
+..++.++.+|.+..+|. .+++.+............... .+..++.++.++.|..+|..+|+.+..+..........
T Consensus 120 ~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNA-EDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 456777888999999998 678887776543321111112 24467778889999999999999998876542211000
Q ss_pred --EecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC-------ceeEEEEeC--CCCEEEEEeCCCcEEEEECCC
Q 007757 392 --LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-------AVNTITFVD--SNRRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 392 --~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~-------~V~~i~~~p--~~~~l~s~s~Dg~I~iwdl~~ 460 (590)
..|.-. ...++.+..++.+..+|..+|+.+........ ....+..+| .+..++.++.+|.+..+|..+
T Consensus 197 ~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 197 GESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 011101 13477788899999999999987766532110 000111111 245677777899999999998
Q ss_pred CcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC
Q 007757 461 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 461 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
+..+-..... ....+.. .+..|++++.+|.+..+|..++..+..............+ + .+.+|+.++.+
T Consensus 276 G~~~W~~~~~---~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~----v--~~g~l~v~~~~ 344 (394)
T PRK11138 276 GQIVWKREYG---SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV----L--YNGYLVVGDSE 344 (394)
T ss_pred CCEEEeecCC---CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE----E--ECCEEEEEeCC
Confidence 8766544221 1112222 4667888889999999999887655433222211111111 1 25678889999
Q ss_pred CcEEEEeCCCCeEEEEEecCCCCEE-EEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 541 GKCWFWDWKSCKVFRTLKCHEGVCI-GCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 541 g~I~iwd~~t~~~~~~l~~h~~~V~-~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
|.|+++|..+|+.+...+.....+. ...+. + ..|+.++.||.|..+
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAI 391 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEE
Confidence 9999999999999988875443333 22332 2 378888999998875
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=3.1e-06 Score=83.83 Aligned_cols=269 Identities=12% Similarity=0.191 Sum_probs=169.4
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEEccCC-CeeE--EEeccCCCceeEEEEecCCCEEEEEeCC-CeEEE
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNS-GKCM--RTYMGHSKAVRDISFCNDGTKFLTASYD-KNIKY 369 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~---Dg~I~iWd~~~~-~~~~--~~~~~h~~~V~~l~fspdg~~l~s~s~D-g~I~v 369 (590)
.+.+.++-|+|+|+ +++|.++-. +|.|..|.+... +.+. ........+-+.++++++|++|+++.+. |.|.+
T Consensus 37 ~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 56778899999999 778877754 578888888533 4332 2222223344889999999999999875 89999
Q ss_pred EECCC-CcEE---EEccCCCC----------ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc---ccCCce
Q 007757 370 WDTET-GQVI---RTFSTGKI----------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAV 432 (590)
Q Consensus 370 Wd~~t-~~~~---~~~~~~~~----------~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~---~h~~~V 432 (590)
+-+.. |.+. ..+..... .....+.|++ ..++++.-.--+|.+|++..+.+...-. .....-
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 98865 3322 22222111 3344455543 2344444455789999999776543221 234567
Q ss_pred eEEEEeCCCCEEEEEe-CCCcEEEEECCCC-cEEEEee------c--CCCCcccEEEEcCCCCEEEEEEcC-CeEEEEEc
Q 007757 433 NTITFVDSNRRFVTSS-DDKSLRVWEFGIP-VVIKYIS------E--PHMHSMPSISLHPNTNWLAAQSLD-NQILIYST 501 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~-~~~~~~~------~--~~~~~i~~i~~sp~g~~l~s~s~d-g~I~iwd~ 501 (590)
+.|.|+|++++..+.+ -+++|-+|.+... ..+..+. . ........|.++++|++|.++... ..|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 8999999999876655 4889999998764 2222221 1 123346678899999999987643 57888877
Q ss_pred cCce-eecccccccCcccccceEEEEEcCCCCEEEEEeCC-CcEEEEeC--CCCeEEEEEe-cCCCCEEEEEEc
Q 007757 502 RERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-GKCWFWDW--KSCKVFRTLK-CHEGVCIGCEWH 570 (590)
Q Consensus 502 ~~~~-~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-g~I~iwd~--~t~~~~~~l~-~h~~~V~~v~~s 570 (590)
.... .+........+ ......+.|++.|++|+++..+ ..|.+|.. .+|++-.... .......|+.|.
T Consensus 274 ~~~~g~L~~~~~~~te--g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPTE--GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEeccC--CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 5432 12212211111 1224568999999999988754 35777755 5666654443 334455677664
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=5.6e-07 Score=95.61 Aligned_cols=218 Identities=18% Similarity=0.150 Sum_probs=133.8
Q ss_pred CCeeEEEeccCCCceeEEEEecCCCE-EEEEeCC---CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEc
Q 007757 332 SGKCMRTYMGHSKAVRDISFCNDGTK-FLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS 407 (590)
Q Consensus 332 ~~~~~~~~~~h~~~V~~l~fspdg~~-l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~ 407 (590)
++...+.+.... .+....|+|+|+. ++..+.. ..|.++|+.+++...............|+|++. .++++.+.
T Consensus 177 dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~--~la~~~~~ 253 (419)
T PRK04043 177 TLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS--KLLLTMAP 253 (419)
T ss_pred CCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC--EEEEEEcc
Confidence 333334333333 7788999999985 6654443 569999999987766554444444566777553 45555544
Q ss_pred C--CcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeecCCCCcccEEEEcC
Q 007757 408 D--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 408 d--g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp 482 (590)
+ ..|+++|+.++...+ +..+.+......|+|+|+.|+..+.. + .|+++|+..+...+...... ....|+|
T Consensus 254 ~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SP 328 (419)
T PRK04043 254 KGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVST 328 (419)
T ss_pred CCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECC
Confidence 4 578888998886443 43344434566899999988877643 2 68888887766544332211 1248999
Q ss_pred CCCEEEEEEcC---------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCC
Q 007757 483 NTNWLAAQSLD---------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKS 550 (590)
Q Consensus 483 ~g~~l~s~s~d---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~t 550 (590)
+|++|+..+.. ..|.+.|+.++.... +.. .+ ......|+|||+.|+..... ..|.+.++..
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~-~~-----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA-NG-----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC-CC-----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 99998887654 368888887654321 111 11 12247899999988765533 2366677644
Q ss_pred CeEEEEEecCCCCEE
Q 007757 551 CKVFRTLKCHEGVCI 565 (590)
Q Consensus 551 ~~~~~~l~~h~~~V~ 565 (590)
.. ...+....+.+.
T Consensus 402 ~~-~~~l~~~~g~~~ 415 (419)
T PRK04043 402 NK-SFLFPLKVGKIQ 415 (419)
T ss_pred Ce-eEEeecCCCccC
Confidence 33 333433334443
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.92 E-value=2.4e-07 Score=88.80 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=134.8
Q ss_pred CCCCeeEEEEcC--CCCC-EEEEEeCCCcEEEEEccCCCeeEEEeccCC---C---ceeEEEEecCCCEEEEEeCCCeEE
Q 007757 298 HTKGVSAIRFFP--KYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMGHS---K---AVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 298 H~~~V~~l~fsp--~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~---~---~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
-+..+..+.|.- .+|. .|+-+..+|.|.++... .......+.+-. - ...++.|++.+..++++..+|.+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~-~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRND-EDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeec-cceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence 345577777763 3355 66777888999999873 333333333321 1 245778999999999999999999
Q ss_pred EEECCCCcEEE--EccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-CceEEE-EcccCCceeEEEEeC-CCC
Q 007757 369 YWDTETGQVIR--TFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQE-YDQHLGAVNTITFVD-SNR 442 (590)
Q Consensus 369 vWd~~t~~~~~--~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-~~~~~~-~~~h~~~V~~i~~~p-~~~ 442 (590)
+-+........ ..+.+. ..+...|.. ...+++.+|+.|+.+..||+|. ++.+.. .+.|...|.+|.-+| .+.
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~--~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSD--KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEecceeeeeecccccccceeeeeeeccc--CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 66654444333 333222 233444444 4448999999999999999993 344443 456889999999886 467
Q ss_pred EEEEEeCCCcEEEEECCC-CcEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEccCc
Q 007757 443 RFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~~ 504 (590)
++++|+.|-.|++||.++ ++++..- ...+.|..+.++|.-. .|+.++.-+-.+|-+....
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eEEEeccccceeeeehhcccCccccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 899999999999999984 3444332 3557899999999632 3333444444666666543
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.92 E-value=1.4e-06 Score=88.42 Aligned_cols=176 Identities=15% Similarity=0.167 Sum_probs=136.3
Q ss_pred EcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC-eEEEEECCCCcEEEEccCCC
Q 007757 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-NIKYWDTETGQVIRTFSTGK 385 (590)
Q Consensus 307 fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg-~I~vWd~~t~~~~~~~~~~~ 385 (590)
|++-+|.+++..|. |...|.+. ..+-.++ .+|...|+-..+..++.-++.|..|| .|-|+|.++++..+....-.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~-~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRP-WDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECC-CCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc
Confidence 55556889988885 67777775 2333332 36788899999998888999999999 99999999998877776667
Q ss_pred CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCC
Q 007757 386 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIP 461 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg----~I~iwdl~~~ 461 (590)
.+..+...+++ ..++++.....|.++|+.++.....-+...+-|+.+.|+|++++|+-+--+| .|+++|+...
T Consensus 403 ~I~av~vs~dG---K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 403 NIEAVKVSPDG---KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ceEEEEEcCCC---cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 77778887765 5788888889999999999987665566778899999999999999876554 6999999887
Q ss_pred cEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007757 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s 491 (590)
+....... ...=.+-+|.|++++|..-+
T Consensus 480 Kiy~vTT~--ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 480 KIYDVTTP--TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecCC--cccccCcccCCCCcEEEEEe
Confidence 76655432 22234567889999876654
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=2.9e-09 Score=108.93 Aligned_cols=138 Identities=15% Similarity=0.186 Sum_probs=101.6
Q ss_pred ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee-cCCCCcccEEEEcCC--CCEE-EEEEcCCe
Q 007757 420 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN--TNWL-AAQSLDNQ 495 (590)
Q Consensus 420 ~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~-~~~~~~i~~i~~sp~--g~~l-~s~s~dg~ 495 (590)
.+..++..|..+|.++.|..+.++++++ ||.|.+||--.+..+..+. .+..+.+..+..-++ ...+ +.++...+
T Consensus 775 aCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST 852 (1034)
T KOG4190|consen 775 ACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST 852 (1034)
T ss_pred eeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhh
Confidence 4667788999999999999988887765 7889999976665554332 233334444444443 3334 44478899
Q ss_pred EEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 007757 496 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 496 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 559 (590)
|+++|.+...-....+.-......+.+.+++..+.|++++++-++|.|.+.|.++|+.+..++.
T Consensus 853 VKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 853 VKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred heeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 9999999876555555543333356788899999999999999999999999999998876553
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=1.4e-08 Score=107.34 Aligned_cols=259 Identities=18% Similarity=0.254 Sum_probs=166.7
Q ss_pred ccCCcceeEEecCCCCCeeEEEEcCCC-CCEEEEEeCCCcEEEEEccCC--CeeEEEeccCCCceeEEEEecC-CCEEEE
Q 007757 285 CYIPKRLVHTWSGHTKGVSAIRFFPKY-GHLILSAGMDTKVKIWDVVNS--GKCMRTYMGHSKAVRDISFCND-GTKFLT 360 (590)
Q Consensus 285 ~~~p~~~v~~l~gH~~~V~~l~fsp~~-g~~L~sgs~Dg~I~iWd~~~~--~~~~~~~~~h~~~V~~l~fspd-g~~l~s 360 (590)
.|-|++.++.+..- .|-.+.|+|.. ..+-++......-.+|++... ...-..+.+|+.+|+++.|+|+ ...+++
T Consensus 55 p~~ppr~l~h~tpw--~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlat 132 (1081)
T KOG0309|consen 55 PFTPPRWLHHITPW--QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLAT 132 (1081)
T ss_pred CCCCceeeeccCcc--hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceee
Confidence 34555555544332 25556676642 233344444556678988432 3344567799999999999994 458899
Q ss_pred EeCCCeEEEEECCCCcE-EEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEE
Q 007757 361 ASYDKNIKYWDTETGQV-IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITF 437 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~-~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~ 437 (590)
++.|-.+..||+++... +..+.. ......+.|+.... -+++.+..+.|.+||++.| .++..+++|...|+.+.|
T Consensus 133 csvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p---~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 133 CSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP---NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred ccccccceeeeccCCCcceeeeecccccCceeeecccCc---chhhhccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence 99999999999987643 333322 33445667766543 3666677788999999987 577888899999999998
Q ss_pred eCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEE--EcCCeEEEEEccCce-------ee
Q 007757 438 VDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ--SLDNQILIYSTRERF-------QL 507 (590)
Q Consensus 438 ~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~--s~dg~I~iwd~~~~~-------~~ 507 (590)
..- ...+.+++.|++|++||................+|..-.+.|-|.-.++- -.++.+.+++.++.. ..
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~ 289 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN 289 (1081)
T ss_pred hhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCC
Confidence 743 34688999999999999976554433333466677777777765433222 222344444433321 23
Q ss_pred cccccccCcccccceEEEEEcC----------CCCEEEEEeCCCcEEEEeCCC
Q 007757 508 NKKKRFAGHIVAGYACQVNFSP----------DGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~sp----------dg~~l~sgs~dg~I~iwd~~t 550 (590)
.....|.||. ..|....|-. ..-.|++=+.|..+++|-+.+
T Consensus 290 ~pVh~F~GH~--D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 290 TPVHTFVGHD--DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cceeeecCcc--hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3456677773 3333333322 122589999999999997754
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=2.7e-07 Score=98.49 Aligned_cols=244 Identities=18% Similarity=0.165 Sum_probs=170.9
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecC------------CCEEEEEeCCC
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND------------GTKFLTASYDK 365 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspd------------g~~l~s~s~Dg 365 (590)
|...-.++.|+|. | +|+-|+. ..|.+-|. ..-+.+..+..|...|+.+.|.|- .-+|+++...|
T Consensus 14 ~~sN~~A~Dw~~~-G-LiAygsh-slV~VVDs-~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 14 SRSNRNAADWSPS-G-LIAYGSH-SLVSVVDS-RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred CcccccccccCcc-c-eEEEecC-ceEEEEeh-hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3344678889987 4 6666664 56888887 577889999999999999999872 12567777789
Q ss_pred eEEEEECCCCcEEEEccCC-CCceEEEEecCCCCC-cEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeC-CCC
Q 007757 366 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNR 442 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~-~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p-~~~ 442 (590)
.|.+||...+..+..+..+ ....-++|.+..+.. .++++-.....|.+|+..+|+....+..-.....|+.+.| +.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999998887777654 344567777665554 6788888889999999999999998887777788899888 455
Q ss_pred EEEEEeCCCcEEEEECCC------CcEEEEeecCCCC------------c-------------ccEEEEcCCCCEEEEEE
Q 007757 443 RFVTSSDDKSLRVWEFGI------PVVIKYISEPHMH------------S-------------MPSISLHPNTNWLAAQS 491 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~------~~~~~~~~~~~~~------------~-------------i~~i~~sp~g~~l~s~s 491 (590)
.|..-+..|.+.+.+.-. +....++..+|.. . .-.++|+|.-+.++...
T Consensus 170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~ 249 (1062)
T KOG1912|consen 170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT 249 (1062)
T ss_pred eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE
Confidence 666666677777766421 1122223222221 0 11256677766566666
Q ss_pred cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC--EEEEEeCCCcEEEEeCCC
Q 007757 492 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~t 550 (590)
....+.++|+.-...+.....-. +.+.-+.+-|+++ .|+++-.||.+.||-.+.
T Consensus 250 ~prellv~dle~~~~l~vvpier-----~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIER-----GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccceEEEcchhhceeEEEEecc-----CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 77889999987655554333322 3333466666654 699999999999997654
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.84 E-value=3.9e-06 Score=97.08 Aligned_cols=247 Identities=16% Similarity=0.227 Sum_probs=154.2
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEcc--------------CCCeeE--------EEecc--------------
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV--------------NSGKCM--------RTYMG-------------- 341 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~--------------~~~~~~--------~~~~~-------------- 341 (590)
-..+|.|++|||| +.+|+..+.+++|.+-+.. ...+.+ ..|+|
T Consensus 119 vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPD-EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 4678999999999 8999999989988776430 000000 01111
Q ss_pred ----------CCCceeEEEEecCCCEEEEEeC---C---CeEEEEECCCCcEEEEcc-CCCCceEEEEecCCCCCcEEEE
Q 007757 342 ----------HSKAVRDISFCNDGTKFLTASY---D---KNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 342 ----------h~~~V~~l~fspdg~~l~s~s~---D---g~I~vWd~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvs 404 (590)
+...-..|+|-.||.+||+.+. . +.|+||+-+ |....+-. .......++|.|.+ +++++
T Consensus 198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG---~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG---NLIAS 273 (928)
T ss_pred CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC---CEEEE
Confidence 2234467889999999998875 2 579999966 55444332 12334467777765 56666
Q ss_pred EEc---CCcEEEEECCC---CceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE--EEeecCCCCccc
Q 007757 405 GMS---DKKIVQWDMNT---KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEPHMHSMP 476 (590)
Q Consensus 405 g~~---dg~I~vwDl~t---~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~--~~~~~~~~~~i~ 476 (590)
... ...|.+|.-+. |+....+......|..+.|++++..|+....|. |.+|-..+-.-. +.+.......+.
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~ 352 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVN 352 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCC
Confidence 543 34566666332 222222223456899999999999999987665 999988765422 222223344456
Q ss_pred EEEEcCCC-CEEEEEEcCCeEEEEEccC----ce----------------ee--cccc--cc------cCcccccceEEE
Q 007757 477 SISLHPNT-NWLAAQSLDNQILIYSTRE----RF----------------QL--NKKK--RF------AGHIVAGYACQV 525 (590)
Q Consensus 477 ~i~~sp~g-~~l~s~s~dg~I~iwd~~~----~~----------------~~--~~~~--~~------~~~~~~~~v~~v 525 (590)
.+.|+|.. ..|.+.+.+|.+..++..- .. .+ ..+. .. ..-.....|..+
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v 432 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV 432 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence 69999954 4566666667666554321 00 00 0000 00 001124568889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 526 NFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
+|++++..+++-..||.|.+|.+..
T Consensus 433 af~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 433 AFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEeCCCCeEEEEECCCCEEEEEecC
Confidence 9999998899999999999998643
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=2.8e-07 Score=97.43 Aligned_cols=244 Identities=12% Similarity=0.130 Sum_probs=156.9
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec-cCCCceeEEEEecCCCEEEEEeCCCeEEE
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
.-+++.||++.|.-+.|+.+ .+-|-|+..+|.|.||-+++..-+-..+. ...+.|.+++|+.+|..+...-.||.|.|
T Consensus 63 mNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 34688999999999999988 78899999999999999864332222122 23456889999999999999999999998
Q ss_pred EECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc-------e-EE---EEcccCCceeEEEEe
Q 007757 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-------I-TQ---EYDQHLGAVNTITFV 438 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~-------~-~~---~~~~h~~~V~~i~~~ 438 (590)
=.++.++.-..--.+.....+.|+++. ..++.+..+|.+.+||....- + +. .+......|..+.|.
T Consensus 142 GsvdGNRIwgKeLkg~~l~hv~ws~D~---~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKGQLLAHVLWSEDL---EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EeeccceecchhcchheccceeecccH---HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 887755443222122222345566554 457778888999999986431 1 10 111122336667775
Q ss_pred --------CCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---------CeEEEEEc
Q 007757 439 --------DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---------NQILIYST 501 (590)
Q Consensus 439 --------p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d---------g~I~iwd~ 501 (590)
|+...|+++-..|.+.|..-.+......+. ..-.+..+.|+++|..|++++.+ +.|.+|..
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp 296 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP 296 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEecc
Confidence 567789999999998887554433333332 23568889999999999999865 35666654
Q ss_pred cCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 502 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
-. ..... ++- ....|+.++|-..|-.++.+- |+.|++=+
T Consensus 297 ~G-~i~gt---lkv--pg~~It~lsWEg~gLriA~Av-dsfiyfan 335 (1189)
T KOG2041|consen 297 YG-HIVGT---LKV--PGSCITGLSWEGTGLRIAIAV-DSFIYFAN 335 (1189)
T ss_pred ch-hheEE---Eec--CCceeeeeEEcCCceEEEEEe-cceEEEEe
Confidence 22 11111 111 134466677765554444332 34444333
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2e-07 Score=92.73 Aligned_cols=259 Identities=19% Similarity=0.204 Sum_probs=154.7
Q ss_pred EEEEEccCCCeeEEEeccCCCceeEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEE
Q 007757 324 VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNIL 402 (590)
Q Consensus 324 I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (590)
+++.+. .+.+....+.+|...|++++|+|..+ ++..++.+..|+|.|+++..++..+..+..++.++|..+. .+++
T Consensus 175 v~~l~~-~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde--~h~I 251 (463)
T KOG1645|consen 175 VQKLES-HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE--RHVI 251 (463)
T ss_pred eEEecc-CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC--ccee
Confidence 445544 34444556778889999999999766 7889999999999999999999999999899998888866 4899
Q ss_pred EEEEcCCcEEEEECCCCc-eEEEEcc--cCCceeEEEEeC------CCCEEEEEeCCCcEEEEECCCC--cEEEEeecCC
Q 007757 403 LAGMSDKKIVQWDMNTKE-ITQEYDQ--HLGAVNTITFVD------SNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPH 471 (590)
Q Consensus 403 vsg~~dg~I~vwDl~t~~-~~~~~~~--h~~~V~~i~~~p------~~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~ 471 (590)
.+|..+|.|.+||++..+ .+..+.+ ...+|..|+..+ .+..|+..+.+ +..|++... ..........
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~ 329 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP 329 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence 999999999999999754 2222222 233455444433 34444444433 455665321 1111121122
Q ss_pred CCcccEEEEcCCCCEEEEEEcCC-------eEEE-EEccCceeecccc-cccCcc-cccceE-EEEEcCCCCEEE-EEeC
Q 007757 472 MHSMPSISLHPNTNWLAAQSLDN-------QILI-YSTRERFQLNKKK-RFAGHI-VAGYAC-QVNFSPDGRFVM-SGDG 539 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~l~s~s~dg-------~I~i-wd~~~~~~~~~~~-~~~~~~-~~~~v~-~v~~spdg~~l~-sgs~ 539 (590)
.+...++..++..+.++.....+ .|.. .|..++..+...+ ...|.. ..-.-. .+.-.++.++|+ .|++
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence 34455566666555544433220 1111 1112222221111 110110 000000 122234555554 5667
Q ss_pred CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEe
Q 007757 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP-LEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp-~~~~~l~s~g~DG~I~iW 589 (590)
...+.+||..++..++++... .+|.+++... +++++|++-. |..++||
T Consensus 410 tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred cceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence 788999999999999998754 6788876654 3455676665 4466664
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=4.7e-08 Score=92.02 Aligned_cols=165 Identities=12% Similarity=0.144 Sum_probs=103.2
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC-----CCeE
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----DKNI 367 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-----Dg~I 367 (590)
+++.-|+++-.+-..+-. ++.++++..||.+.+++........+.+..-...--+.++...++.+.++.. -+..
T Consensus 83 ~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 344455554444344433 6789999999999999984422222222221122223334445665555432 2344
Q ss_pred EEEECCCCcEEEEc-cCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc-eEEEEcccCCceeEEEEeCC-CCEE
Q 007757 368 KYWDTETGQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDS-NRRF 444 (590)
Q Consensus 368 ~vWd~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~-~~~~~~~h~~~V~~i~~~p~-~~~l 444 (590)
+.|+++..+.+..- .......+++-+| ..++++++|+.||.+-+||.+... ++..+..|..+|+.+.|+|. +..|
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp--~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHP--AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeecccccccccccccccccchhhhCCc--ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 55555433222111 1122233444444 556899999999999999999874 44456789999999999985 5689
Q ss_pred EEEeCCCcEEEEECCC
Q 007757 445 VTSSDDKSLRVWEFGI 460 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~ 460 (590)
++++.||.+..||-.+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999754
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=1e-07 Score=94.97 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=116.4
Q ss_pred eEEEEecCCCEEEEEeCCCeEEEEECCCC----cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE
Q 007757 347 RDISFCNDGTKFLTASYDKNIKYWDTETG----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 347 ~~l~fspdg~~l~s~s~Dg~I~vWd~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~ 422 (590)
..+..++.+++|+++..+....++++... +++..+........+.+........+....+....+.+|....+...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 34455667778887777777666665433 34444445556666666665543222222333444555555444433
Q ss_pred EEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 423 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
.+-+|...+..++|+||+++++++..|..|++-.+.....+..+..+|..-|..+++-++. .|++++.|++|++||+.
T Consensus 146 -~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 146 -PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDIT 223 (390)
T ss_pred -hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecc
Confidence 3448999999999999999999999999999999988888888888999999999998654 58999999999999999
Q ss_pred Cceeec
Q 007757 503 ERFQLN 508 (590)
Q Consensus 503 ~~~~~~ 508 (590)
++..+.
T Consensus 224 sgk~L~ 229 (390)
T KOG3914|consen 224 SGKLLD 229 (390)
T ss_pred cCCccc
Confidence 887663
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=4.4e-06 Score=80.43 Aligned_cols=238 Identities=12% Similarity=0.132 Sum_probs=133.5
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEEccCCCe-eEEEe---ccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 007757 305 IRFFPKYGHLILSAGMDTKVKIWDVVNSGK-CMRTY---MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 305 l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~---~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
++.+++ |++||.- .|..|.|=....+-. ++... +...-.=+-++|+||+.+||.+...|+|+++|+....+ ..
T Consensus 3 ~~~~~~-Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 3 LALSSD-GKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred eeecCC-CcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EE
Confidence 455666 7777654 466777766533322 22222 22333467899999999999999999999999975433 33
Q ss_pred ccCCC--------CceEEEEecCCCC---CcEEEEEEcCCcEEEEECCCC-----ceEEEE--c-ccCCceeEEEEeCCC
Q 007757 381 FSTGK--------IPYVVKLNPDDDK---QNILLAGMSDKKIVQWDMNTK-----EITQEY--D-QHLGAVNTITFVDSN 441 (590)
Q Consensus 381 ~~~~~--------~~~~~~~~~~~~~---~~~lvsg~~dg~I~vwDl~t~-----~~~~~~--~-~h~~~V~~i~~~p~~ 441 (590)
+.... .+..+.|...... ...|++-...|.++-|-+..+ +....+ . .+...|+++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 32211 1222233322211 235777777888877765322 222222 2 246789999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCC-EE-EEEEcCCe------EEEEEccCceeecccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WL-AAQSLDNQ------ILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~-~l-~s~s~dg~------I~iwd~~~~~~~~~~~~~ 513 (590)
+.|++|+....= ... .......+++-.+-.+.. +. ++...++. ..+|.+-+ ...+
T Consensus 160 ~LLlVgG~~~~~------~~~-----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~------~~~f 222 (282)
T PF15492_consen 160 RLLLVGGCEQNQ------DGM-----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS------FKFF 222 (282)
T ss_pred CEEEEeccCCCC------Ccc-----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc------eeee
Confidence 988887653320 000 000111122111111111 11 11111111 11222111 0111
Q ss_pred cC-cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC
Q 007757 514 AG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 514 ~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~ 562 (590)
.. ......|..+..||||.+|++...+|.|.+|++.+.++...+..+..
T Consensus 223 s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 223 SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 00 11245677899999999999999999999999999998888776544
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=8.7e-06 Score=80.69 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=156.1
Q ss_pred eeEEEEec-CCCEEEEEeCCC-eEEEEECCCCcEEEEccCCCCc---eEEEEecCCCCCcEEEEEE-----cCCcEEEEE
Q 007757 346 VRDISFCN-DGTKFLTASYDK-NIKYWDTETGQVIRTFSTGKIP---YVVKLNPDDDKQNILLAGM-----SDKKIVQWD 415 (590)
Q Consensus 346 V~~l~fsp-dg~~l~s~s~Dg-~I~vWd~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~lvsg~-----~dg~I~vwD 415 (590)
...++.+| .+..++.+-.-| ...+||..+++....+.....- ---.|++++ .+|++.- ..|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG---~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG---RLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC---CEEEEeccccCCCcEEEEEEE
Confidence 44677888 455556665554 5789999999998877653322 245566654 4566653 458999999
Q ss_pred CC-CCceEEEEcccCCceeEEEEeCCCCEEEEEe------------------CCCcEEEEECCCCcEEEEeec---CCCC
Q 007757 416 MN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSS------------------DDKSLRVWEFGIPVVIKYISE---PHMH 473 (590)
Q Consensus 416 l~-t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s------------------~Dg~I~iwdl~~~~~~~~~~~---~~~~ 473 (590)
.. +-+.+.++..|.-.-..+.+.|+++.|+++- .+-+|.+.|..++..+..... .+..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 99 6678888988887788899999998887762 234566677777777666432 3566
Q ss_pred cccEEEEcCCCCEEEEEEcCCe-------EEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe-CCCcEEE
Q 007757 474 SMPSISLHPNTNWLAAQSLDNQ-------ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWF 545 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg~-------I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~i 545 (590)
+|..+++.++|..++.+-..|. |-+++............-.-....+|+-+|+++++|.++++.+ ..|.+.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 8999999999877666544432 3444433221111111111122357889999999999886665 6778999
Q ss_pred EeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 546 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 546 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
||..+++++....... +..++..+ ++ +++|.|.-.
T Consensus 244 ~d~~tg~~~~~~~l~D--~cGva~~~-~~-f~~ssG~G~ 278 (305)
T PF07433_consen 244 WDAATGRLLGSVPLPD--ACGVAPTD-DG-FLVSSGQGQ 278 (305)
T ss_pred EECCCCCEeeccccCc--eeeeeecC-Cc-eEEeCCCcc
Confidence 9999999988766443 56676665 33 777766543
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.7e-07 Score=99.16 Aligned_cols=186 Identities=15% Similarity=0.197 Sum_probs=141.9
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
...++|++++ +++|+-|+.+|.|++.+. .+.+ .+...|+.. ..+|.+++|||.||.|.|-.+-+.+..
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~--~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTC--QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEec--CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 4567888886 679999999999999997 4444 555566654 558999999999999999999999999
Q ss_pred EEccCCCCceEEEEecC--CCCCcEEEEEEcCCcEEEEECCC--CceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007757 379 RTFSTGKIPYVVKLNPD--DDKQNILLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~--~~~~~~lvsg~~dg~I~vwDl~t--~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
..+..+.++.++++.|+ ......+++|+..| +.++.-+- ......+..-.|+|.++.|. |++++-++++| |+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 99999999999999998 34456799999888 77765331 11112455567899999995 77888888877 89
Q ss_pred EEECCCCcEEEEeecCCCCc-----ccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 455 VWEFGIPVVIKYISEPHMHS-----MPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~-----i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
|||....+.+..+..++... ...+.|.++.+.++ +...+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 99999988888876655322 34577776654433 455678888887
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.76 E-value=5.7e-06 Score=80.96 Aligned_cols=216 Identities=16% Similarity=0.123 Sum_probs=136.4
Q ss_pred CCeEEEEECCCCcEEEEccCCC--CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 364 DKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
+|.|..||..+|+.+....... ..........+ ..+++++.++.|+.||..+|+.+..+.. .+.+...... .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG---GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET---TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC---CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc
Confidence 6899999999999999887633 22221122122 4577778999999999999999888865 3322222222 34
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEe-ecCC--CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYI-SEPH--MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~-~~~~--~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
..+++++.++.|+.+|..++..+... .... ......+.....+..++++..++.|..+|+.++..+...........
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 56677778889999999999888774 2211 11122223333488899999999999999998877654433111100
Q ss_pred ------ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 519 ------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 519 ------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
......+.+. ++ .++.++.+|.+..+|+.+++.+.... ...+..+ ... .+..|+.++.++.|.+||
T Consensus 157 ~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSV-DGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EEC-CCTEEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-cee-eCCEEEEEeCCCEEEEEE
Confidence 0011223333 44 77777778864444999999775444 2223332 233 445777777899999886
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=4.5e-09 Score=112.90 Aligned_cols=263 Identities=19% Similarity=0.226 Sum_probs=179.9
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC--
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-- 365 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg-- 365 (590)
..+..++|+.|+..-+|++|+-. .+.|+.|+..|.|+++++ .+|.....+.+|..+|+.+.=+.+|..+++.+.-.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv-~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNV-SSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hcccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEc-cCccccccccccccccccccccCCcceeeeeccccCc
Confidence 45677888999999999999998 889999999999999999 68888889999999999999999998877665433
Q ss_pred eEEEEECCC-CcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc----ccCCceeEEEEeCC
Q 007757 366 NIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD----QHLGAVNTITFVDS 440 (590)
Q Consensus 366 ~I~vWd~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~----~h~~~V~~i~~~p~ 440 (590)
-..+|++.+ +...++|... .++.|+... ..-+.|+......+||+.++..+.++- +....-++..|+|.
T Consensus 1168 lsaLW~~~s~~~~~Hsf~ed---~~vkFsn~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDED---KAVKFSNSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred hHHHhccccccCcccccccc---ceeehhhhH---HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 478999853 4455555433 244444332 334556666788999999998776632 12223478899998
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccccc
Q 007757 441 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
...++- || .+||++.+..++.+..-. -...-.|||+|..++..+ .|||+++...+..... -
T Consensus 1242 D~LIln---dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~-------L 1302 (1516)
T KOG1832|consen 1242 DTLILN---DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS-------L 1302 (1516)
T ss_pred cceEee---Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hhhhhHHHHHHhcCcc-------c
Confidence 876653 44 479999998777764321 222346999999998866 5899998654433322 2
Q ss_pred ceEEEEEcCCCCEEEEEeC------C-----------CcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007757 521 YACQVNFSPDGRFVMSGDG------E-----------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~------d-----------g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
.-|.+.|+..|..++..-. | ...+-++...-+.+.++.+ ...+..++-.|.+ .+|..
T Consensus 1303 dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D-~~l~v 1376 (1516)
T KOG1832|consen 1303 DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTD-SFLGV 1376 (1516)
T ss_pred cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCcc-ceEEE
Confidence 3456889888877654320 0 1233344444455555553 2345666666633 34443
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=2.7e-08 Score=96.98 Aligned_cols=165 Identities=12% Similarity=0.157 Sum_probs=130.8
Q ss_pred EEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCCcccE
Q 007757 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPS 477 (590)
Q Consensus 403 vsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~~~~~i~~ 477 (590)
++.+.+-.|.+-|+.++-. +.|. ..+.|.++.|...++.++.|+..|.|..+|++.. .+...+ -|...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhh
Confidence 4555667788889888742 3333 6678999999988999999999999999999764 333444 48888999
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 007757 478 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 556 (590)
Q Consensus 478 i~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~ 556 (590)
+..-. ++.+|++.+.+|.|.+||++..+.-.....+.||.+...-.-+-+.+....|++++.|...+||.++++.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 88877 78899999999999999999776655677888998766555567778888999999999999999999999998
Q ss_pred EecCC----CCEEEEEEcC
Q 007757 557 LKCHE----GVCIGCEWHP 571 (590)
Q Consensus 557 l~~h~----~~V~~v~~sp 571 (590)
++... ..+.+++|..
T Consensus 384 ipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cCCCCccccccccceehhc
Confidence 87543 2455666653
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=2.4e-06 Score=90.59 Aligned_cols=258 Identities=10% Similarity=0.080 Sum_probs=158.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC----------cee-EEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK----------AVR-DISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~----------~V~-~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..+++++.+|.|.-+|. .+++.+....-... .+. .+.. .+..++.++.+|.|..+|.++|+.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 457777888888888888 57777766542210 000 1111 355777888899999999999999988
Q ss_pred ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCce-----eEEEEeCCCCEEEEEeCCCcEEE
Q 007757 381 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V-----~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..........-... ...++++..++.|+.+|..+|+.+..+......+ .+.... +..++.++.++.+..
T Consensus 146 ~~~~~~~~ssP~v~----~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a 219 (394)
T PRK11138 146 TKVAGEALSRPVVS----DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSA 219 (394)
T ss_pred ccCCCceecCCEEE----CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEE
Confidence 87654332211111 1357778889999999999999988875431111 111111 235667778899999
Q ss_pred EECCCCcEEEEeecCCC---Cc---ccEEEEcC--CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEE
Q 007757 456 WEFGIPVVIKYISEPHM---HS---MPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 456 wdl~~~~~~~~~~~~~~---~~---i~~i~~sp--~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
+|..++...-....... .. ...+..+| .+..+++++.+|.+..+|..++..+.... +... ..+.
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~~~------~~~~- 291 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YGSV------NDFA- 291 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CCCc------cCcE-
Confidence 99887765543321110 00 01111122 25567778889999999998876553322 1110 0111
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..+..|+.++.+|.|..+|..+++.+.....-. ....+.... +.+|+.++.||.|.+.|
T Consensus 292 -~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 292 -VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred -EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEeCCCEEEEEE
Confidence 246678888899999999999998876543211 112222222 24677788888887654
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.71 E-value=4.9e-06 Score=93.49 Aligned_cols=271 Identities=12% Similarity=0.133 Sum_probs=160.5
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
..|.++.|.-+ ..-++.+...|.|.+-|.. ...+.....-...|.+++|+||+..++..+..+++.+-+ .+..++.
T Consensus 69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~e--t~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLAD-TNSICVITALGDIILVDPE--TLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA 144 (1265)
T ss_pred cceEEEEEecc-cceEEEEecCCcEEEEccc--ccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence 57999999998 7888888999999999873 223333334567899999999999999998877776543 3333322
Q ss_pred EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc-----eEE-----EEcccCCceeEEEEeCCCCEEEEE--
Q 007757 380 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-----ITQ-----EYDQHLGAVNTITFVDSNRRFVTS-- 447 (590)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~-----~~~-----~~~~h~~~V~~i~~~p~~~~l~s~-- 447 (590)
..... .+.....-++.++....=..+.-..|+ .+. ........=++|+|-.+|.+|++.
T Consensus 145 E~~L~---------~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 145 EKPLD---------ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred ccccc---------cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 22110 000111123333322221222211111 000 000112233579999999999883
Q ss_pred ---eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE---cCCeEEEEEccCceeecccccccCcccccc
Q 007757 448 ---SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 448 ---s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
...+.|+|||-. ..+.....+..+--.+++|-|.|..+++.. .|+.|.+|.-+.-..-.....+ ......
T Consensus 216 ~~~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~--p~de~~ 291 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF--PLDEKE 291 (1265)
T ss_pred eccCCceeEEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC--cccccc
Confidence 333789999976 334444445566678899999999988864 4567999876542221111111 112333
Q ss_pred eEEEEEcCCCCEEEE---EeCCCcEEEEeCCCCeE--EEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 522 ACQVNFSPDGRFVMS---GDGEGKCWFWDWKSCKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 522 v~~v~~spdg~~l~s---gs~dg~I~iwd~~t~~~--~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+..++|+.++..|++ ......|++|-+.+..- .+.+....... +.|+|-....|..-..+|.+.++
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEE
Confidence 778999999999987 44455599998876432 23333333222 77887544445444456655443
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.69 E-value=7.9e-08 Score=90.49 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=101.0
Q ss_pred ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcCCCCEEEEEE-----cCCeEEEEE
Q 007757 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQS-----LDNQILIYS 500 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~s~s-----~dg~I~iwd 500 (590)
.|.++-.+-..+-.++.++++..||.+.+++.+.-... ..+...+... .+.++...++++.++. .-+..+.|+
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeec
Confidence 34444333334445678999999999999998762221 1111112222 1222333444444432 123455666
Q ss_pred ccCceeecccccccCcccccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeE-EEEEecCCCCEEEEEEcCCCCCEEE
Q 007757 501 TRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
++....+.. .+.....+.+++-+|. .+++++|+.||.+-+||++.... ...+++|..++..+-|||.++..|+
T Consensus 166 ~~p~~t~~~-----~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 166 LDPIKTLIP-----SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred ccccccccc-----cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 554322211 1111223677888885 45677888999999999998754 5567899999999999999999999
Q ss_pred EEeCCCcEEEeC
Q 007757 579 TCGWDGLIKYWD 590 (590)
Q Consensus 579 s~g~DG~I~iWD 590 (590)
+|+.||.+..||
T Consensus 241 t~sedGslw~wd 252 (319)
T KOG4714|consen 241 TCSEDGSLWHWD 252 (319)
T ss_pred EecCCCcEEEEc
Confidence 999999999997
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=2.9e-07 Score=100.01 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=139.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCcee
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 433 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~ 433 (590)
++..++.|+....+..+|+++.+..+........ +..+... ..++.+|...|+|.+-|.++.+.+.++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEec---CcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 4567888888889999999999888777655533 3333322 26899999999999999999999999999999998
Q ss_pred EEEEeCCCCEEEEEeC---------CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccC
Q 007757 434 TITFVDSNRRFVTSSD---------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~---------Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~ 503 (590)
.+.. .|+.|++++. |..|+|||++....+.-+.- .....-+.|+|. ...+++++..|+..+.|..+
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~--~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF--PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc--ccCchhhhhcccccceEEEEecccceeeccccc
Confidence 8777 5789998875 56789999988776655432 122245677886 45788889999999998432
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 504 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
.... ....+.-+.....+..+++|++|+.|+.|..+|.|.+|-
T Consensus 298 lsNP-~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNP-PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCC-ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2111 111222233355688899999999999999999999997
No 303
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.64 E-value=3.1e-05 Score=78.86 Aligned_cols=252 Identities=12% Similarity=0.113 Sum_probs=163.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-cc--C---CC
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FS--T---GK 385 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~-~~--~---~~ 385 (590)
++..+....+|.=.||.+.-+++-++...... .-.+=..+.||+.++.. ..|.|.++|.++...... +. . ..
T Consensus 236 ~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k 313 (668)
T COG4946 236 ERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKK 313 (668)
T ss_pred ceEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccc
Confidence 34445556677767776644555444322111 11222345588877754 458999999887654322 11 0 01
Q ss_pred Cce-------EEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCC-cEEEEE
Q 007757 386 IPY-------VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVWE 457 (590)
Q Consensus 386 ~~~-------~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg-~I~iwd 457 (590)
... .-.+++. .+.+++..+ .|+..+.+...+-.++. +|.+.|.-..+.-++.-++.|..|| .|-|+|
T Consensus 314 ~~k~~~pskyledfa~~--~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd 388 (668)
T COG4946 314 QPKFVNPSKYLEDFAVV--NGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD 388 (668)
T ss_pred cccccCHHHhhhhhccC--CCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence 111 0112222 234555554 57777777665554443 5677788888888888999999999 899999
Q ss_pred CCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEE
Q 007757 458 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 537 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 537 (590)
.+.....+.. +.-+.|.++..+++|++++++.....|.++|+.++.....- ....+.|+.+.|||++++||-+
T Consensus 389 ~~~~e~kr~e--~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-----kS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 389 KDGGEVKRIE--KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-----KSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred cCCceEEEee--CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-----ccccceeEEEEEcCCceeEEEe
Confidence 9877654433 46778999999999999999998899999999887543221 2224678889999999999987
Q ss_pred eCCC----cEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007757 538 DGEG----KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 538 s~dg----~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
--+| .|+++|+..++....... .+.=.+-+|.| ++++|.-
T Consensus 462 fP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~-d~ryLYf 505 (668)
T COG4946 462 FPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDP-DGRYLYF 505 (668)
T ss_pred cCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCC-CCcEEEE
Confidence 7665 589999999887654431 22224456777 4555443
No 304
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.64 E-value=4.4e-07 Score=90.53 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=107.3
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE-EEEee-cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec
Q 007757 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-IKYIS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~-~~~~~-~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
....+..++.+++++++..++...++++..... .+.+. ......-+++.+......+.++..-|.++-+|+-.... .
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-G 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-c
Confidence 344556778888999998888888888765432 11111 01222334555555555666655555555555433211 2
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
.....-|| -..+..++|+||+++|++++.|..|++-.......+..|- +|..-|..++.-+ +..|+++|.|++|+
T Consensus 143 ~~~~~lGh--vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 143 RCEPILGH--VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLR 218 (390)
T ss_pred Ccchhhhh--hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEE
Confidence 23345566 3568899999999999999999999998888777776664 6999999999987 34689999999999
Q ss_pred EeC
Q 007757 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
+||
T Consensus 219 ~Wd 221 (390)
T KOG3914|consen 219 LWD 221 (390)
T ss_pred EEe
Confidence 997
No 305
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=3.1e-05 Score=82.35 Aligned_cols=205 Identities=9% Similarity=0.048 Sum_probs=121.0
Q ss_pred CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEE-EEc--CCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 365 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA-GMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs-g~~--dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
..|.+-|...... +.+..+.......|+|++. .+++. ... ...|+++|+.+++...... ..+......|+|+|
T Consensus 169 ~~l~~~d~dg~~~-~~~~~~~~~~~p~wSpDG~--~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIVKGGLNIFPKWANKEQ--TAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCce-eEEccCCCeEeEEECCCCC--cEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 3555556554433 3233333445566666543 33443 332 4579999999887655443 45556678899999
Q ss_pred CEEEEEe-C--CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-C--eEEEEEccCceeecccccccC
Q 007757 442 RRFVTSS-D--DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 442 ~~l~s~s-~--Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~~~~ 515 (590)
+.++... . +..|+++|+..+... .+.. .........|+|+|+.|+..+.. + .|.++++.++..... .+.+
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl--t~~g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT-QITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV--VFHG 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE-Eccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--ccCC
Confidence 8776543 2 346888888776543 3432 22223456899999988777643 3 577888876543211 1112
Q ss_pred cccccceEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 007757 516 HIVAGYACQVNFSPDGRFVMSGDGE---------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~~l~sgs~d---------g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
. . ...|||||++|+..... ..|++.|+.++... .+... +......|+|++..++++....+.
T Consensus 321 ~----~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 321 K----N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred C----c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCc
Confidence 1 1 24899999998766543 36888898887653 33322 233468899954434444333333
No 306
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.60 E-value=7.6e-06 Score=77.69 Aligned_cols=233 Identities=8% Similarity=-0.034 Sum_probs=144.1
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYV 389 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~ 389 (590)
..+|+.|+..|...+|........+.....|...|+-+.=.. ....+..++.|.++++.+++-+......... -....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 468999999999999998434444444444554443222111 1234677888888888888655433322222 12334
Q ss_pred EEEecCCCCCcEEEEEEcCCcEEEEECCCC-c-eEE-EEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 007757 390 VKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E-ITQ-EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 390 ~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~-~~~-~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~ 466 (590)
+.+++++ .++++.+....|..|.+... + .+. ........-.+..|+.....|+++..||++.|||++.......
T Consensus 164 ~~~snd~---~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 164 LHYSNDP---SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eEEcCCC---ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 4445443 67888888889999988643 2 233 2233445567889999999999999999999999986543222
Q ss_pred ----eecCCCCcccEEEEcCCCC--EEEEEEcCCeEEEEEccCceeecccccccCc---ccccceEEEEEcCCCCEEEEE
Q 007757 467 ----ISEPHMHSMPSISLHPNTN--WLAAQSLDNQILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSG 537 (590)
Q Consensus 467 ----~~~~~~~~i~~i~~sp~g~--~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~v~~spdg~~l~sg 537 (590)
....|.+.+..+.|++.|. +|+..-.-+.+.+.|+++......+..+... .....+....|+.++.-+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 2235788899999998664 4555445578999999887554433322211 011224455666666655555
Q ss_pred eCCCcEEEEeC
Q 007757 538 DGEGKCWFWDW 548 (590)
Q Consensus 538 s~dg~I~iwd~ 548 (590)
+.+ .+.=|++
T Consensus 321 ~e~-~~ae~ni 330 (344)
T KOG4532|consen 321 NEL-QGAEYNI 330 (344)
T ss_pred cch-hhheeec
Confidence 433 2334444
No 307
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=9.1e-06 Score=84.17 Aligned_cols=259 Identities=15% Similarity=0.202 Sum_probs=148.0
Q ss_pred CeeEEEEcCCCCCEEEEEeCC-----------CcEEEEEccCCCeeEEEeccC--CCce-eEEEEecCCCEEEEEeCCCe
Q 007757 301 GVSAIRFFPKYGHLILSAGMD-----------TKVKIWDVVNSGKCMRTYMGH--SKAV-RDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~D-----------g~I~iWd~~~~~~~~~~~~~h--~~~V-~~l~fspdg~~l~s~s~Dg~ 366 (590)
.|.-+.|||. .++|+|-+.. ..++|||+ .+|...+.+... ...+ .-+.||.|++++|.-.. ..
T Consensus 251 ~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~IWDI-~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLIIWDI-ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCc-cceEEEecCCccccCcccCCCceEEEEEc-cccchhcceeccCCCccccceEEeccCCceeEEecc-ce
Confidence 4889999999 8999987642 56899999 688887777652 2222 34679999998887665 57
Q ss_pred EEEEECCCCcEEEE----------ccCC--------------CC----------------------ceEEEEecCCCCCc
Q 007757 367 IKYWDTETGQVIRT----------FSTG--------------KI----------------------PYVVKLNPDDDKQN 400 (590)
Q Consensus 367 I~vWd~~t~~~~~~----------~~~~--------------~~----------------------~~~~~~~~~~~~~~ 400 (590)
|.|++..+..++-. |.-. .. +.-+.+++... +.
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~-gd 406 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKS-GD 406 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccC-Cc
Confidence 88887654322111 0000 00 00011111111 11
Q ss_pred EEEEE----------EcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC---CCcEEEEECC-CCcEEEE
Q 007757 401 ILLAG----------MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFG-IPVVIKY 466 (590)
Q Consensus 401 ~lvsg----------~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~---Dg~I~iwdl~-~~~~~~~ 466 (590)
+|+.- +.-..+-|+.++...+....-.-...|...+|-|.|..|++.+. ..++.+|.+. +......
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 11110 00112233333332221111124567888999999999887654 3578888876 3322222
Q ss_pred eecCCCCcccEEEEcCCCCEEEEEE---cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcE
Q 007757 467 ISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 467 ~~~~~~~~i~~i~~sp~g~~l~s~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
+..-.....+.+.|+|.|++++++. ..|.+.++|+...... ......| ...+.+.|.|.|+|++++++-++.
T Consensus 487 Vk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k--~~~~~eh---~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 487 VKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK--DTASPEH---FAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred hhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh--hccCccc---cccccceECCCCCEEEEeeehhhh
Confidence 2222345678899999999988764 5688999998641111 1111222 335568999999999999865432
Q ss_pred EEEeCCCCeEEEEEecCC------CCEEEEEEcC
Q 007757 544 WFWDWKSCKVFRTLKCHE------GVCIGCEWHP 571 (590)
Q Consensus 544 ~iwd~~t~~~~~~l~~h~------~~V~~v~~sp 571 (590)
. +..|-.+.++++.- +......|-|
T Consensus 562 k---~d~GYri~tfqGrll~~~~i~~f~qF~WRP 592 (698)
T KOG2314|consen 562 K---VDNGYRIFTFQGRLLKEDIIDRFKQFLWRP 592 (698)
T ss_pred c---cccceEEEEeecHHHHHHHHHHHHhhccCC
Confidence 2 23444555554421 1234566766
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.59 E-value=0.00016 Score=71.41 Aligned_cols=217 Identities=17% Similarity=0.212 Sum_probs=135.5
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEe-cCCCEEEEEeCCCeEEEEECCCCcEEEEcc
Q 007757 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFC-NDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 304 ~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs-pdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
+++|.+..+.++++--..+.|..|+. ..+.. ..+.... ...+++. +++ .|+.+.. +.+.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~-~~~~~-~~~~~~~--~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDP-DTGEV-EVIDLPG--PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-TTTEE-EEEESSS--EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEEC-CCCeE-EEEecCC--CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEee
Confidence 57899854888888878999999998 34433 3232222 6777887 565 5555555 445556999986654443
Q ss_pred C--C--CC--ceEEEEecCCCCCcEEEEEEcC--------CcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEE-EE
Q 007757 383 T--G--KI--PYVVKLNPDDDKQNILLAGMSD--------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV-TS 447 (590)
Q Consensus 383 ~--~--~~--~~~~~~~~~~~~~~~lvsg~~d--------g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~-s~ 447 (590)
. . .. +.-+.+.++ +++.++.... |.|+.++.. ++..... ......+.|+|+|+++.|+ +-
T Consensus 78 ~~~~~~~~~~~ND~~vd~~---G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPD---GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EETTCSCTEEEEEEEE-TT---S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCC---CCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecc
Confidence 3 1 22 233444443 3566655543 568888887 5543333 3456779999999998775 55
Q ss_pred eCCCcEEEEECCCCcE----EEEeecCCC--CcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccc
Q 007757 448 SDDKSLRVWEFGIPVV----IKYISEPHM--HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~----~~~~~~~~~--~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
+..+.|..+++..... ...+..... .....+++..+|++.++....+.|.+++.. +..+..+.. . ...
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-p----~~~ 226 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL-P----VPR 226 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE--S----SSS
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC-C----CCC
Confidence 6778899999853321 122222122 247789999999988888889999999987 444433322 1 124
Q ss_pred eEEEEE-cCCCCEEEEE
Q 007757 522 ACQVNF-SPDGRFVMSG 537 (590)
Q Consensus 522 v~~v~~-spdg~~l~sg 537 (590)
+++++| .++.+.|+..
T Consensus 227 ~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEESTTSSEEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 667888 4666665543
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=1.9e-07 Score=63.43 Aligned_cols=38 Identities=29% Similarity=0.769 Sum_probs=36.4
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd 328 (590)
++++++.+|.+.|++|+|+|+ +.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 578999999999999999999 99999999999999997
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.51 E-value=3.8e-07 Score=61.97 Aligned_cols=39 Identities=41% Similarity=0.867 Sum_probs=36.9
Q ss_pred CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.50 E-value=0.00019 Score=71.39 Aligned_cols=231 Identities=16% Similarity=0.211 Sum_probs=148.8
Q ss_pred eEEEEcCCCCCEEEEEeCCCc-EEEEEccCCCeeEEEeccCCCce--eEEEEecCCCEEEEEeC-----CCeEEEEECC-
Q 007757 303 SAIRFFPKYGHLILSAGMDTK-VKIWDVVNSGKCMRTYMGHSKAV--RDISFCNDGTKFLTASY-----DKNIKYWDTE- 373 (590)
Q Consensus 303 ~~l~fsp~~g~~L~sgs~Dg~-I~iWd~~~~~~~~~~~~~h~~~V--~~l~fspdg~~l~s~s~-----Dg~I~vWd~~- 373 (590)
..++.+|..+..++.+-.-|+ ..+||. .++.....+....+.- =.-+|++||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~-~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDC-RTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEc-CCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 356778865777778877765 567888 5666665554322221 13579999999998744 4899999998
Q ss_pred CCcEEEEccCCC-CceEEEEecCCCCCcEEEEE-----------------EcCCcEEEEECCCCceEEE--E--cccCCc
Q 007757 374 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAG-----------------MSDKKIVQWDMNTKEITQE--Y--DQHLGA 431 (590)
Q Consensus 374 t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg-----------------~~dg~I~vwDl~t~~~~~~--~--~~h~~~ 431 (590)
+-+.+..+..+. .+.-+.+.+++. .++++- ..+-.|.+.|..+|+++.. + ..|.-.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~--tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGE--TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCC--EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 667777776543 344556666542 233321 2345677788899988776 4 347789
Q ss_pred eeEEEEeCCCCEEEEEeCCCc-------EEEEECCCCcEEEEeec------CCCCcccEEEEcCCCCEEEEEE-cCCeEE
Q 007757 432 VNTITFVDSNRRFVTSSDDKS-------LRVWEFGIPVVIKYISE------PHMHSMPSISLHPNTNWLAAQS-LDNQIL 497 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~Dg~-------I~iwdl~~~~~~~~~~~------~~~~~i~~i~~sp~g~~l~s~s-~dg~I~ 497 (590)
|..+++.++|..++..-..|. |.+++.... +..+.. ...+.+-+|++++++.++++.| ..|.+.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 999999999876666544432 444443332 222211 2346688999999998876655 568899
Q ss_pred EEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
+||..++..+.... -..+|.++..+++ ++++. ..|.+....
T Consensus 243 ~~d~~tg~~~~~~~-------l~D~cGva~~~~~-f~~ss-G~G~~~~~~ 283 (305)
T PF07433_consen 243 VWDAATGRLLGSVP-------LPDACGVAPTDDG-FLVSS-GQGQLIRLS 283 (305)
T ss_pred EEECCCCCEeeccc-------cCceeeeeecCCc-eEEeC-CCccEEEcc
Confidence 99998875543322 2446677777777 55544 445544333
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=5e-07 Score=88.34 Aligned_cols=150 Identities=15% Similarity=0.239 Sum_probs=113.8
Q ss_pred EEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC-----cEEEEccCCCCceEE
Q 007757 316 LSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-----QVIRTFSTGKIPYVV 390 (590)
Q Consensus 316 ~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-----~~~~~~~~~~~~~~~ 390 (590)
++.+.+-.|-|-|+ .++ ....|. ..+.|.++.|...+++++.|+.+|.|.+.|++.+ .+...+-++..+.++
T Consensus 228 fs~G~sqqv~L~nv-etg-~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNV-ETG-HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEe-ecc-cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 55666777888887 333 223333 5678999999998999999999999999999864 455666666666655
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCce---EEEEcccCCceeE--EEEeCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---TQEYDQHLGAVNT--ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK 465 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~---~~~~~~h~~~V~~--i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~ 465 (590)
...-. .+..|++.+.+|+|.+||++.-++ ++++.+|...-.- +...+....++++++|...+||.++.+..+.
T Consensus 305 q~Lq~--s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 305 QILQF--SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhcc--ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 55442 236799999999999999997766 8899988764433 3445677789999999999999999999888
Q ss_pred EeecC
Q 007757 466 YISEP 470 (590)
Q Consensus 466 ~~~~~ 470 (590)
.+..+
T Consensus 383 tipf~ 387 (425)
T KOG2695|consen 383 TIPFP 387 (425)
T ss_pred ccCCC
Confidence 87543
No 313
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.46 E-value=0.00013 Score=79.51 Aligned_cols=263 Identities=14% Similarity=0.154 Sum_probs=158.8
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC------cee--EEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK------AVR--DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~------~V~--~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
+..++.++.++.|.-.|. .+++.+..+..... .+. .+... ++..++.++.++.|..+|.++|+.+..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDA-ATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEEC-CCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 456777888899999998 67777766543322 110 11111 226788888999999999999999988876
Q ss_pred CCCc---eEEEEecCCCCCcEEEEEE---------cCCcEEEEECCCCceEEEEcccCCc--------------------
Q 007757 384 GKIP---YVVKLNPDDDKQNILLAGM---------SDKKIVQWDMNTKEITQEYDQHLGA-------------------- 431 (590)
Q Consensus 384 ~~~~---~~~~~~~~~~~~~~lvsg~---------~dg~I~vwDl~t~~~~~~~~~h~~~-------------------- 431 (590)
.... ..+...|.-.. .++++++ .++.|+.+|..+|+.+..+......
T Consensus 139 ~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 5431 11111111111 3455554 3688999999999988877542110
Q ss_pred e-eEEEEeCCCCEEEEEeCCC------------------cEEEEECCCCcEEEEeecCCCC-----cccEEEEc----CC
Q 007757 432 V-NTITFVDSNRRFVTSSDDK------------------SLRVWEFGIPVVIKYISEPHMH-----SMPSISLH----PN 483 (590)
Q Consensus 432 V-~~i~~~p~~~~l~s~s~Dg------------------~I~iwdl~~~~~~~~~~~~~~~-----~i~~i~~s----p~ 483 (590)
| .+..+.+.+..++.++.++ .|.-+|..+++..-........ ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234444566777777665 6888999988887665432110 00001111 12
Q ss_pred CC---EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEE------------------eCCCc
Q 007757 484 TN---WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG------------------DGEGK 542 (590)
Q Consensus 484 g~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg------------------s~dg~ 542 (590)
+. .+++++.+|.+..+|..++..+-....... .++.+| ..++.+ ..+|.
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~--------~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ--------PMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc--------ccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 33 677888899999999999876654332100 123333 222222 24688
Q ss_pred EEEEeCCCCeEEEEEecCC--------CCE--EEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 543 CWFWDWKSCKVFRTLKCHE--------GVC--IGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 543 I~iwd~~t~~~~~~l~~h~--------~~V--~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|.-.|..+|+.+.+..... .+. ..+.. .+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEE
Confidence 9999999999988776431 111 11222 335788888999988765
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.44 E-value=2.9e-06 Score=92.47 Aligned_cols=151 Identities=15% Similarity=0.262 Sum_probs=124.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC---------CCeEEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---------DKNIKY 369 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~---------Dg~I~v 369 (590)
.++|+-++.+ +++|++|...|+|.+-|. ++.+.+.++..|++.|.++.. .|+.|++|+. |..|+|
T Consensus 177 a~~v~imR~N---nr~lf~G~t~G~V~LrD~-~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 177 ASGVTIMRYN---NRNLFCGDTRGTVFLRDP-NSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred CCceEEEEec---CcEEEeecccceEEeecC-CcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhh
Confidence 3346666653 789999999999999999 788999999999999988776 6889999986 567999
Q ss_pred EECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC---CCC-ceEEEEcccCCceeEEEEeCCCCEEE
Q 007757 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM---NTK-EITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl---~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
||++..+.+..+.....+..+.|.|.-. ..+++.+..|...+.|. ... .-+..+......+..+++++++..++
T Consensus 251 YDLRmmral~PI~~~~~P~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~ala 328 (1118)
T KOG1275|consen 251 YDLRMMRALSPIQFPYGPQFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALA 328 (1118)
T ss_pred hhhhhhhccCCcccccCchhhhhccccc--ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEE
Confidence 9999999888888888888888888654 56888899999999994 332 12333333445599999999999999
Q ss_pred EEeCCCcEEEEE
Q 007757 446 TSSDDKSLRVWE 457 (590)
Q Consensus 446 s~s~Dg~I~iwd 457 (590)
.|..+|.|.+|-
T Consensus 329 fgd~~g~v~~wa 340 (1118)
T KOG1275|consen 329 FGDHEGHVNLWA 340 (1118)
T ss_pred EecccCcEeeec
Confidence 999999999997
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=1.9e-07 Score=100.79 Aligned_cols=216 Identities=13% Similarity=0.236 Sum_probs=148.7
Q ss_pred CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC-cE
Q 007757 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KI 411 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-~I 411 (590)
.+..+++..|....+|++|+-+.++|+.|+..|.|+++++.+|.......++... +..+.|.-++..+|.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa-vT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA-VTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc-cccccccCCcceeeeeccccCchH
Confidence 3556678889999999999999999999999999999999999888777655433 333444444434444444444 57
Q ss_pred EEEECCC-CceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC---CCCcccEEEEcCCCCEE
Q 007757 412 VQWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWL 487 (590)
Q Consensus 412 ~vwDl~t-~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~~i~~i~~sp~g~~l 487 (590)
.+|++.+ +....+|. .-.++.|+.....-+.|+......+||+.+...+.++..+ ....-.+..|+|+..++
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 7899864 33444443 4467788765444455555567899999988766553221 23334678899998877
Q ss_pred EEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEE
Q 007757 488 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 567 (590)
Q Consensus 488 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v 567 (590)
+- || .+||.+....+..+..|.... .=.|+|.|.-++.-+ -|||+++.++++....-.. ..+
T Consensus 1246 ln---dG--vLWDvR~~~aIh~FD~ft~~~------~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq--c~V 1307 (1516)
T KOG1832|consen 1246 LN---DG--VLWDVRIPEAIHRFDQFTDYG------GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ--CAV 1307 (1516)
T ss_pred ee---Cc--eeeeeccHHHHhhhhhheecc------cccccCCCceEEeec-----hhhhhHHHHHHhcCccccc--eEE
Confidence 64 44 589999876666655554221 136999999988765 4999999988876654333 455
Q ss_pred EEcC
Q 007757 568 EWHP 571 (590)
Q Consensus 568 ~~sp 571 (590)
.|+.
T Consensus 1308 tFNs 1311 (1516)
T KOG1832|consen 1308 TFNS 1311 (1516)
T ss_pred Eecc
Confidence 6665
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.35 E-value=0.0005 Score=65.44 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=73.1
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
|++++.|...|.+++-++ +++..+..+..-..--......+++..+..++.|++....|..+..++...+.+....+.-
T Consensus 63 gdfVV~GCy~g~lYfl~~-~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCV-KTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEEEEEEccCcEEEEEe-cchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 678999999999999999 6776666654332222233456688999999999999999999999999887776654332
Q ss_pred EecCCCCCcEEEEEEcCCcEEEEECCCC
Q 007757 392 LNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~vwDl~t~ 419 (590)
.....+ .-|.++...|.|.--..+..
T Consensus 142 ~i~~g~--~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 142 VIAPGD--GSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eecCCC--ceEEEEeccceEEEEccCCC
Confidence 222212 23556666666666555544
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.8e-05 Score=85.65 Aligned_cols=186 Identities=15% Similarity=0.152 Sum_probs=128.9
Q ss_pred CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE
Q 007757 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~ 422 (590)
...++|++++ +++|+-|+.+|.|++.+....- ...+.. ++....+.++++|+.||+|.+..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~---------s~~~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDH---------SSSILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-cccccc---------cccccCCceEEEecCCCcEEEeeccCCccc
Confidence 3456777775 6789999999999999876432 211211 111445689999999999999999988877
Q ss_pred EEEcccCCceeEEEEeCC-----CCEEEEEeCCCcEEEEECC---CCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC
Q 007757 423 QEYDQHLGAVNTITFVDS-----NRRFVTSSDDKSLRVWEFG---IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~-----~~~l~s~s~Dg~I~iwdl~---~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 494 (590)
.++. ...++.+|+++|+ .+.|++|+.-| +.++.-+ ....+ ......++|.++.|. |+++|-++.+|
T Consensus 107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEec--CcEEEEecCCC
Confidence 7764 4578999999997 56899999988 8777642 12222 223467889999995 77888777555
Q ss_pred eEEEEEccCceeecccccccCc-ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 495 QILIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
|++||+..+..+..+...... ......+.+.|.++.++ +.|=.| +|+|..++
T Consensus 181 -v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 181 -VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGD-SVKICSIK 233 (846)
T ss_pred -cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEecCC-eEEEEEEe
Confidence 999999887766544432221 12334556888877654 444333 68888776
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00015 Score=79.26 Aligned_cols=195 Identities=12% Similarity=0.189 Sum_probs=130.5
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCc-eeEEEEecCCCEEEEEeCCC-----eEEEEECCC
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-VRDISFCNDGTKFLTASYDK-----NIKYWDTET 374 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-V~~l~fspdg~~l~s~s~Dg-----~I~vWd~~t 374 (590)
.|+| |++. +..++.|+.+|.|.+.+- ..+.++.++.+... |..+....+..+|++.+.|+ .|+||+++.
T Consensus 27 ~isc--~~s~-~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSS-TGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCC-CceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 4554 4565 789999999998888773 56677888888877 55555444557888877764 599999863
Q ss_pred C------cEE---EEcc--C---CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC---C-CceEEEEcccCCceeEEE
Q 007757 375 G------QVI---RTFS--T---GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---T-KEITQEYDQHLGAVNTIT 436 (590)
Q Consensus 375 ~------~~~---~~~~--~---~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~---t-~~~~~~~~~h~~~V~~i~ 436 (590)
- .++ +.+. . ..+..++.++.+ -..+++|-.+|.|.++.-. . +....-...-..+|+.+.
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~---l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED---LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc---ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 2 344 2222 1 223345555554 3689999999999998432 1 111122223457999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 437 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
+..++..++....-..|.+|.+....+.......++.++.|.++++....|++++ +..|.+|+....
T Consensus 179 ~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 179 LRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred EecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 9988887343444467999998755544444456788889999987766566654 456999988654
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.30 E-value=0.00061 Score=74.28 Aligned_cols=237 Identities=15% Similarity=0.224 Sum_probs=141.7
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccCCCc-----ee-EEEEecCCCEEEEEe---------CCCeEEEEECCCCcE
Q 007757 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-----VR-DISFCNDGTKFLTAS---------YDKNIKYWDTETGQV 377 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-----V~-~l~fspdg~~l~s~s---------~Dg~I~vWd~~t~~~ 377 (590)
..++.++.++.|.-+|. .+++.+..+...... +. ...+. +..++.++ .++.|..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~-~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDA-ETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEEC-CCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 67888888999999998 678888776543221 11 11222 23455543 468899999999999
Q ss_pred EEEccCCCC-ceEE---------E-------E-ecC-CCCCcEEEEEEcCC------------------cEEEEECCCCc
Q 007757 378 IRTFSTGKI-PYVV---------K-------L-NPD-DDKQNILLAGMSDK------------------KIVQWDMNTKE 420 (590)
Q Consensus 378 ~~~~~~~~~-~~~~---------~-------~-~~~-~~~~~~lvsg~~dg------------------~I~vwDl~t~~ 420 (590)
+..+..... .... + + .+. .....++++++.++ .|.-+|+.+|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 988765321 0000 0 0 000 01235677777665 79999999999
Q ss_pred eEEEEcccCCce------eEEEEe----CCCC---EEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEE
Q 007757 421 ITQEYDQHLGAV------NTITFV----DSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 487 (590)
Q Consensus 421 ~~~~~~~h~~~V------~~i~~~----p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l 487 (590)
.+..+..-.... ....+. -++. .++.++.+|.+...|..+++.+-..... ...++.+| ..+
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~v 341 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLV 341 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceE
Confidence 988875311111 111111 1232 5778888999999999999887665321 11223333 222
Q ss_pred EEE------------------EcCCeEEEEEccCceeecccccccCcc-----cccceEEEEEcCCCCEEEEEeCCCcEE
Q 007757 488 AAQ------------------SLDNQILIYSTRERFQLNKKKRFAGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCW 544 (590)
Q Consensus 488 ~s~------------------s~dg~I~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~v~~spdg~~l~sgs~dg~I~ 544 (590)
+++ ..+|.|..+|+.++..+-......... .......+. -.+.+|++|+.+|.|+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFR 419 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEE
Confidence 222 235678888887776554433210000 000001111 2567899999999999
Q ss_pred EEeCCCCeEEEEEecC
Q 007757 545 FWDWKSCKVFRTLKCH 560 (590)
Q Consensus 545 iwd~~t~~~~~~l~~h 560 (590)
.+|..+|+.+.+++..
T Consensus 420 ald~~tG~~lW~~~~~ 435 (488)
T cd00216 420 AFDATTGKELWKFRTP 435 (488)
T ss_pred EEECCCCceeeEEECC
Confidence 9999999999998753
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.29 E-value=4.7e-06 Score=80.46 Aligned_cols=238 Identities=20% Similarity=0.383 Sum_probs=151.0
Q ss_pred ccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCC------------CCeeEEEEcCCCC-CEEEE
Q 007757 251 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHT------------KGVSAIRFFPKYG-HLILS 317 (590)
Q Consensus 251 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~------------~~V~~l~fsp~~g-~~L~s 317 (590)
.+.++..+++++ |.-||.-+......+ .|- .+....|++|. ..|..|.|..+.+ ..++.
T Consensus 33 efd~tg~YlatG--DkgGRVvlfer~~s~----~ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 33 EFDETGLYLATG--DKGGRVVLFEREKSY----GCE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred EeccccceEeec--CCCceEEEeeccccc----ccc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 355565666543 566776655443322 121 13334556665 3588999987643 45666
Q ss_pred EeCCCcEEEEEccCC------------------Ce-----------------------eEEEe-ccCCCceeEEEEecCC
Q 007757 318 AGMDTKVKIWDVVNS------------------GK-----------------------CMRTY-MGHSKAVRDISFCNDG 355 (590)
Q Consensus 318 gs~Dg~I~iWd~~~~------------------~~-----------------------~~~~~-~~h~~~V~~l~fspdg 355 (590)
.+.|.+|+||.+++. +. +.+.+ ..|.-.|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999998542 10 01112 3577788999999998
Q ss_pred CEEEEEeCCCeEEEEECCCCcEE---EEccCC------CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE---
Q 007757 356 TKFLTASYDKNIKYWDTETGQVI---RTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--- 423 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~---~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~--- 423 (590)
..++++. |=.|.+|+++-.... ..+..+ ..+....|+|. ..+++.-.++.|.|++-|+|...+..
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~--~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE--MCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh--HcceEEEecCCCcEEehhhhhhhhccCch
Confidence 8888774 688999998643221 111111 11234455554 34678888899999999998542211
Q ss_pred -------------EEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEeecCC------------CCc---
Q 007757 424 -------------EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPH------------MHS--- 474 (590)
Q Consensus 424 -------------~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~------------~~~--- 474 (590)
-+..-...|..+.|+++|+++++-+. -+|+|||.+.. .+++++.. | ...
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~-h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM-HCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech-HHHHHHHHHhhhhccceee
Confidence 11223456888999999998888765 68999999764 34454421 1 111
Q ss_pred ccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 475 MPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 475 i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
-..+.|+.+.+.+++|+..+..-+|-.
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eEEEEecCCcccccccccccceeeecc
Confidence 234778888889999998888777753
No 321
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.29 E-value=0.0015 Score=65.82 Aligned_cols=244 Identities=13% Similarity=0.131 Sum_probs=150.9
Q ss_pred EEEEcCCCCCEEEEEe----------CCCcEEEEEccCCCeeEEEeccC---C----CceeEEEEecCCCEEEEEeC--C
Q 007757 304 AIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH---S----KAVRDISFCNDGTKFLTASY--D 364 (590)
Q Consensus 304 ~l~fsp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h---~----~~V~~l~fspdg~~l~s~s~--D 364 (590)
.+..+|+ ++.+++++ ..-.|.+||. .+-.+...+.-. . .....++++.+|++++.... -
T Consensus 40 ~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~-~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 40 NVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDT-QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEET-TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred ceeECCC-CCEEEEEEEEEeccccccceeEEEEEec-CcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 3567888 77777643 2446899998 555555433211 1 22346788999998887654 4
Q ss_pred CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC-CCceEEEEc----ccCCc-eeEEEEe
Q 007757 365 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYD----QHLGA-VNTITFV 438 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~-t~~~~~~~~----~h~~~-V~~i~~~ 438 (590)
..|.|-|+..++.+..+...... .+.|.+. .-|.+-|.||.+....+. .|+..+... ....+ +..-.+.
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC~---~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGCW---LIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSEE---EEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred CeEEEEECCCCceeeeecCCCEE---EEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE
Confidence 68999999999999888765543 3344433 348889999999999987 455543321 11122 2334455
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEE--EEeecCC---------CCcccEEEEcCCCCEEEEEEcC----------CeEE
Q 007757 439 DSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEPH---------MHSMPSISLHPNTNWLAAQSLD----------NQIL 497 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~~--~~~~~~~---------~~~i~~i~~sp~g~~l~s~s~d----------g~I~ 497 (590)
..+..++..+..|.|+--|+...... ..+.... .+...-+++++..+.|++-... ..|.
T Consensus 193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 56667777889999999998765432 2221110 1234457888766655553211 2488
Q ss_pred EEEccCceeecccccccCcccccceEEEEEcCCCC-EEEEE-eCCCcEEEEeCCCCeEEEEEecC
Q 007757 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSG-DGEGKCWFWDWKSCKVFRTLKCH 560 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sg-s~dg~I~iwd~~t~~~~~~l~~h 560 (590)
+||+.+++++.++.. ...+.+|.++.+.+ +|++. ..++.|.+||..+|+.++++..-
T Consensus 273 v~D~~t~krv~Ri~l------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEETTTTEEEEEEEE------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEECCCCeEEEEEeC------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 889988877755543 23355788888766 55544 45799999999999999998743
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00011 Score=80.07 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=135.0
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC-----cEEEEECCCC-----
Q 007757 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTK----- 419 (590)
Q Consensus 350 ~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~vwDl~t~----- 419 (590)
+|++.+..++.|+.+|.|.+.+- .-+.++.|...... .+.+.....++++|++.+.|+ .|++|++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46678889999999999888763 23343555443333 344444444556777766654 4899998643
Q ss_pred -ceEE--EEcc-----cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC---CcEEEEeecCCCCcccEEEEcCCCCEEE
Q 007757 420 -EITQ--EYDQ-----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---PVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 420 -~~~~--~~~~-----h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~---~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 488 (590)
.++. .+.. ...++.+++++.+-+.+|+|-.+|.|..+.-+. ......+......+|+.+++..++..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2331 1112 345789999999989999999999999886422 2222333345778999999999888744
Q ss_pred EEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCCC
Q 007757 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGV 563 (590)
Q Consensus 489 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-~h~~~ 563 (590)
....-..|.+|.+.... .....+..+ +..+.|..|++....+++++.. .|.+|+.....+-..+. +|...
T Consensus 188 Fv~Tt~~V~~y~l~gr~--p~~~~ld~~--G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT--PSLKVLDNN--GISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EEEecceeEEEEecCCC--cceeeeccC--CccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEE
Confidence 44556779999987543 222223333 5567777888766545555444 69999988766666666 55543
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=0.00093 Score=63.66 Aligned_cols=186 Identities=10% Similarity=0.071 Sum_probs=110.5
Q ss_pred EcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC
Q 007757 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI 386 (590)
Q Consensus 307 fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~ 386 (590)
..++...+++.|+..+.+.--|. .++..+..-. -...|.+-+.- -|++++.|++.|.+.+.+..+|..+..+..-..
T Consensus 18 V~~dskT~v~igSHs~~~~avd~-~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDP-QSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EecCCceEEEEecCCceEEEecC-CCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 44555678888998888888888 4665554321 12233332222 467899999999999999999988888876555
Q ss_pred ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 007757 387 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 387 ~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~ 466 (590)
+.+-..... .+.++.+|+.|+..+..|.++...+...+-..+...+-+..+-...|..+...|.|.--..........
T Consensus 95 vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 95 VKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEF 172 (354)
T ss_pred hccceEEcC--CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCccee
Confidence 544333322 236899999999999999999988887654333333444455333444444445443333322211111
Q ss_pred eecCCCCcccE--EEEcCCCCEEEEEEcCCeEEEEE
Q 007757 467 ISEPHMHSMPS--ISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 467 ~~~~~~~~i~~--i~~sp~g~~l~s~s~dg~I~iwd 500 (590)
.......+|.+ ++. +..+..++-||.+.-++
T Consensus 173 w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 173 WAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD 205 (354)
T ss_pred hhhhcCCccccCceec---cceEEEEEeccEEEEEc
Confidence 11111122211 111 34566666777777776
No 324
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.23 E-value=0.0012 Score=74.23 Aligned_cols=145 Identities=15% Similarity=0.253 Sum_probs=105.3
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCC----CCcEEEEEEcCCcEEEEECCCCc--eEEE-E
Q 007757 354 DGTKFLTA-SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD----KQNILLAGMSDKKIVQWDMNTKE--ITQE-Y 425 (590)
Q Consensus 354 dg~~l~s~-s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~----~~~~lvsg~~dg~I~vwDl~t~~--~~~~-~ 425 (590)
+.++|+.- .....|+-.|+++|+++..+..+....+..+.|... ...-.++|-++..|..||.|-.. ++.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 345789999999999999999888776777777532 12347888899999999998642 3321 1
Q ss_pred c--ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 426 D--QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 426 ~--~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
. ......+|++-..+| +||+|+.+|.||+||- .+...++...+...+|.+|.++.+|+||++.+ +..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1 133456777777666 8999999999999994 44444555556688999999999999998876 556666664
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.22 E-value=7.6e-07 Score=93.54 Aligned_cols=199 Identities=17% Similarity=0.244 Sum_probs=128.3
Q ss_pred CCCeeEEEEcCCCC-CEEEEEeCCCcEEEEEccCCCee-EEEeccCCCceeEEEEec-CCCEEEEEe----CCCeEEEEE
Q 007757 299 TKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVVNSGKC-MRTYMGHSKAVRDISFCN-DGTKFLTAS----YDKNIKYWD 371 (590)
Q Consensus 299 ~~~V~~l~fsp~~g-~~L~sgs~Dg~I~iWd~~~~~~~-~~~~~~h~~~V~~l~fsp-dg~~l~s~s----~Dg~I~vWd 371 (590)
...+.|++++-+.. .+++.|..+|.|-+-.+.+.... .....+|....++++|++ |.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45577888776544 57889999999999988544433 344567888999999999 566666662 256899999
Q ss_pred CCCC--cEE--EEccC--CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeC-CCCE
Q 007757 372 TETG--QVI--RTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRR 443 (590)
Q Consensus 372 ~~t~--~~~--~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p-~~~~ 443 (590)
+.++ .+. ..|.. .....++++. ....++++|+....+.++|+|.. .....+ ....+..+.+.| .+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwl---rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWL---RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred cccccCCCccccccccccccCccccccc---cCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 9877 221 12222 1222244444 34478999999999999999843 222222 234567788888 5667
Q ss_pred EEEEeCCCcEEEEE-CCCC-cEEEEee---cCCCCcccEEEEcCCC-CEEEEEEc-CCeEEEEEccC
Q 007757 444 FVTSSDDKSLRVWE-FGIP-VVIKYIS---EPHMHSMPSISLHPNT-NWLAAQSL-DNQILIYSTRE 503 (590)
Q Consensus 444 l~s~s~Dg~I~iwd-l~~~-~~~~~~~---~~~~~~i~~i~~sp~g-~~l~s~s~-dg~I~iwd~~~ 503 (590)
+++-. ||.|.+|| .+.- .++..+. ......+..++|.|.. ..+++.+. .++|++|++..
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 66655 99999999 3322 1222111 1122247889999963 24444444 47899998753
No 326
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.21 E-value=0.00034 Score=67.64 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=105.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc-------CCCceeEEEEecC------CCEEEEEeCCCeEE
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-------HSKAVRDISFCND------GTKFLTASYDKNIK 368 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-------h~~~V~~l~fspd------g~~l~s~s~Dg~I~ 368 (590)
=..++|+|+ +.+||.+...|+|+++|+ .+..+..+.. -..+|..|.|... ...|++-.++|.++
T Consensus 46 WRkl~WSpD-~tlLa~a~S~G~i~vfdl--~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPD-CTLLAYAESTGTIRVFDL--MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCC-CcEEEEEcCCCeEEEEec--ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 356799999 999999999999999998 3344433332 2356777777652 22577778888888
Q ss_pred EEECCC-----CcEEEEccC--C--CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeC
Q 007757 369 YWDTET-----GQVIRTFST--G--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 369 vWd~~t-----~~~~~~~~~--~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p 439 (590)
-|-+.. .+....|.. . +.+..+.+.+ .. ++|++|+.... ..+. -......+++-....
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p--~h-~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP--KH-RLLLVGGCEQN------QDGM----SKASSCGLTAWRILS 189 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcC--CC-CEEEEeccCCC------CCcc----ccccccCceEEEEcC
Confidence 877532 233333332 2 2333444444 33 45555553221 0000 001112222222222
Q ss_pred CCCE--EEEEeCCC------cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee
Q 007757 440 SNRR--FVTSSDDK------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 440 ~~~~--l~s~s~Dg------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 506 (590)
+..+ .++...|+ +..+|.+-+..... ........|..|.++|+|..|++...+|.|.+|++.+-..
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 2211 11222222 12333332211111 1123566799999999999999999999999999976443
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.18 E-value=0.00058 Score=73.97 Aligned_cols=206 Identities=10% Similarity=0.109 Sum_probs=121.3
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCcEEEEccCC--------------CCceEEEE----ecCCCCCc-EEEEEEcCCcEEE
Q 007757 354 DGTKFLTASY-DKNIKYWDTETGQVIRTFSTG--------------KIPYVVKL----NPDDDKQN-ILLAGMSDKKIVQ 413 (590)
Q Consensus 354 dg~~l~s~s~-Dg~I~vWd~~t~~~~~~~~~~--------------~~~~~~~~----~~~~~~~~-~lvsg~~dg~I~v 413 (590)
||++|+.-.. ...|...+++..++-+.+..+ ...++++- .|.+..+. +....-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6777777653 456666666665554433221 11122211 11111222 2223334466777
Q ss_pred EECCCCceEEEEcccCCceeEEEEeCCCCEEEEEe----------------------------------------CCCcE
Q 007757 414 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS----------------------------------------DDKSL 453 (590)
Q Consensus 414 wDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s----------------------------------------~Dg~I 453 (590)
+|..+.+...++.-- +....+.++++++++++++ .++.|
T Consensus 220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 888877766665422 2335567777777776665 12457
Q ss_pred EEEECCC-----CcEEEEeecCCCCcccEEEEcCCCCEEEEEEc-CCeEEEEEccCceeec-----ccccccCc-ccccc
Q 007757 454 RVWEFGI-----PVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRERFQLN-----KKKRFAGH-IVAGY 521 (590)
Q Consensus 454 ~iwdl~~-----~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~-----~~~~~~~~-~~~~~ 521 (590)
.+.|..+ ...+.++ +-......+.++|+|+++++++. ++.|.|+|+....... ......+. ...-.
T Consensus 299 ~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG 376 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG 376 (635)
T ss_pred EEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence 7888776 4455555 34556788999999999877664 7899999997644211 00000000 00111
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeEEEEEecCCC
Q 007757 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEG 562 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t----------~~~~~~l~~h~~ 562 (590)
....+|.++|....+-.-|..|..|++.. ...+..+..|-.
T Consensus 377 PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence 23578999999888888999999999876 345555655543
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=4.7e-05 Score=82.45 Aligned_cols=261 Identities=11% Similarity=0.064 Sum_probs=145.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT- 380 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~- 380 (590)
+++++|+|. .-+|++|-.-|.+.+|.. +..+.......|..+|..+.||++|..++++..-|.|.+|...--..++.
T Consensus 62 atSLCWHpe-~~vLa~gwe~g~~~v~~~-~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~ 139 (1416)
T KOG3617|consen 62 ATSLCWHPE-EFVLAQGWEMGVSDVQKT-NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTS 139 (1416)
T ss_pred hhhhccChH-HHHHhhccccceeEEEec-CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccc
Confidence 567999999 788899999999999998 55566666678999999999999999999999999999998763222221
Q ss_pred ----ccCCCCce--EEEEecCCCC---CcEEEEEEcCCcEE-EEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 381 ----FSTGKIPY--VVKLNPDDDK---QNILLAGMSDKKIV-QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 381 ----~~~~~~~~--~~~~~~~~~~---~~~lvsg~~dg~I~-vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
...+.... |..+.++... ....++.+.+..+- .++.+........ .|. -.|+|..|+.++.+
T Consensus 140 ~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-~ks-------gv~~g~~F~~~~~~ 211 (1416)
T KOG3617|consen 140 NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-EKS-------GVPKGTEFLFAGKS 211 (1416)
T ss_pred hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-ccc-------CCCCCcEEEEEcCC
Confidence 11222233 3333333110 01122333333322 3333211111111 111 13678888888999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC-c-------------------------
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-R------------------------- 504 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~-~------------------------- 504 (590)
|+|+.-|-.. .......... ...+-|.+...-+++...+-++.+|-... +
T Consensus 212 GtVyyvdq~g-~~~~V~k~dS---~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sE 287 (1416)
T KOG3617|consen 212 GTVYYVDQNG-RQRTVHKLDS---EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSE 287 (1416)
T ss_pred ceEEEEcCCC-cEEEEEEccc---hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccc
Confidence 9988877432 2222211111 01122222222222222222222221100 0
Q ss_pred --eeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC-CC------CeEEEEEec---CCCCEEEEEEcCC
Q 007757 505 --FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KS------CKVFRTLKC---HEGVCIGCEWHPL 572 (590)
Q Consensus 505 --~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~-~t------~~~~~~l~~---h~~~V~~v~~sp~ 572 (590)
..+.+ ..-.+......+.+++++..+..|+.|...|.+.+|-- .+ +.-...+.+ ..+.|+.|.|.|
T Consensus 288 ssGvLr~-~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~- 365 (1416)
T KOG3617|consen 288 SSGVLRK-SEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP- 365 (1416)
T ss_pred ccccccC-CcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc-
Confidence 00000 11112223456788999999999999999999999953 22 123444443 346799999998
Q ss_pred CCCEEE
Q 007757 573 EQSKVA 578 (590)
Q Consensus 573 ~~~~l~ 578 (590)
-.+.++
T Consensus 366 ~k~~~a 371 (1416)
T KOG3617|consen 366 IKSTAA 371 (1416)
T ss_pred ccchhh
Confidence 333333
No 329
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.14 E-value=0.0039 Score=62.46 Aligned_cols=230 Identities=11% Similarity=0.167 Sum_probs=132.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEc----------
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF---------- 381 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~---------- 381 (590)
++.|+.|+.+| |.++++........... ...|..+...++-+.|++-+ |+.+.++++.........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 78899999999 89999833333333332 23399999999777777665 599999998765444311
Q ss_pred ---cCCCCceEEEEe-cCCCCCcEEEEEEcCCcEEEEECCCC-----ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCc
Q 007757 382 ---STGKIPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTK-----EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 382 ---~~~~~~~~~~~~-~~~~~~~~lvsg~~dg~I~vwDl~t~-----~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
.......+..+. .....+...++.....+|.+|..... ....++. -...+.+++|. ++.++.|..+ .
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-G 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-c
Confidence 112222333343 12222234444555568888877653 3445543 34788999998 5577777654 4
Q ss_pred EEEEECCCCcEEEEeecCC-----------CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec-ccccccCccccc
Q 007757 453 LRVWEFGIPVVIKYISEPH-----------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAG 520 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~-----------~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~ 520 (590)
..+.|+.+........... ..++..+. -+++.+|++. +..-.+.+... .... ..-.+. .
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G-~~~r~~~i~W~-----~ 229 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNG-EPSRKSTIQWS-----S 229 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCC-CcCcccEEEcC-----C
Confidence 7788988665443332111 11222223 3345555542 33333444433 2221 111121 1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 007757 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
....+++ ...||++...+ .|.||++.++++++++....
T Consensus 230 ~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 230 APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 2233444 34577777665 59999999999999887543
No 330
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.8e-05 Score=80.08 Aligned_cols=212 Identities=14% Similarity=0.163 Sum_probs=136.3
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE---EccCC-CCceEEEEecCCCCCcEEEEEEc-CCcEEEEEC
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR---TFSTG-KIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDM 416 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~---~~~~~-~~~~~~~~~~~~~~~~~lvsg~~-dg~I~vwDl 416 (590)
|...|+.+.-+ -.+++++++.||.++.|--..-..+. .+..+ .....++.+.+ +.++.+++. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d---g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD---GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc---ceeEeeccCcccceeEEEe
Confidence 67777766554 45799999999999999754322221 12111 11122333332 356777666 999999999
Q ss_pred CCCceEEEEc--ccCCceeEEEEeCCC--CEEEEEeCCCcEEEEECCCCc-EEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007757 417 NTKEITQEYD--QHLGAVNTITFVDSN--RRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 417 ~t~~~~~~~~--~h~~~V~~i~~~p~~--~~l~s~s~Dg~I~iwdl~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~s~s 491 (590)
.+-..+.-++ -..+.+.++.-..+- ..-++.-.++.+.++|-.... ....+..-|..+|.++.+.+.+..+++..
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 8765443322 122232222211111 223344567899999976554 44555567999999999999999999999
Q ss_pred cCCeEEEEEccCceeeccc------c----cccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 007757 492 LDNQILIYSTRERFQLNKK------K----RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~------~----~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
..|.|..|......+.... + .+.-........++.|+|+|..+.+-+.|..|++++.+++++++.+
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999999988641111100 0 0111122445668999999999999999999999999998866544
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.10 E-value=0.0018 Score=65.27 Aligned_cols=259 Identities=17% Similarity=0.178 Sum_probs=152.1
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC----------CCeEEEEECCCCcEEEEccCCCCc----
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIP---- 387 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~----------Dg~I~vWd~~t~~~~~~~~~~~~~---- 387 (590)
+.+.|.|. ..++.+-.+.. +-.-.+..+|+++.+++++. .-.|.+||..+-.....+..+...
T Consensus 17 ~rv~viD~-d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDA-DSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEET-TTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEEC-CCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 47899998 57777666543 22334678999999887542 346999999999888866554331
Q ss_pred ----eEEEEecCCCCCcEEEEE--EcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-
Q 007757 388 ----YVVKLNPDDDKQNILLAG--MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI- 460 (590)
Q Consensus 388 ----~~~~~~~~~~~~~~lvsg--~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~- 460 (590)
....++.++ .++++. +-...|.+.|+..++.+.++... + +..+--. .++.|.+-|.||++....+..
T Consensus 94 ~~~~~~~~ls~dg---k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 94 VPYKNMFALSADG---KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPS-GNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp S--GGGEEE-TTS---SEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEE-ETTEEEEEETTSCEEEEEETST
T ss_pred cccccceEEccCC---cEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEec-CCCceEEEecCCceEEEEECCC
Confidence 123333322 222222 23456777788888777776432 1 1122212 235688889999999988873
Q ss_pred CcEEEEe---ecCCCCc-ccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec--cccccc-----CcccccceEEEEEcC
Q 007757 461 PVVIKYI---SEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--KKKRFA-----GHIVAGYACQVNFSP 529 (590)
Q Consensus 461 ~~~~~~~---~~~~~~~-i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~-----~~~~~~~v~~v~~sp 529 (590)
++..... ..+...+ +..-++...+..++..+.+|.|+-.|+....... ....+. ..-..+.-..+++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 3332221 1122222 2233455556666667899999998886543111 111110 011112222478887
Q ss_pred CCCEEEEEe---CCC-------cEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEE-eCCCcEEEeC
Q 007757 530 DGRFVMSGD---GEG-------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs---~dg-------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~-g~DG~I~iWD 590 (590)
..+.|++-- .+| .|+++|+.+++.+.++.. ..++.+|..+.++..+|++. ..++.|.+||
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 665554421 122 499999999999999884 23577899998777788765 4578999987
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.008 Score=63.33 Aligned_cols=262 Identities=15% Similarity=0.170 Sum_probs=172.5
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~ 379 (590)
....+...|.+....++-.....+.+-+.. ..........-...-..+++++.++.++ +...+..|.+.|+.+.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 455667777733444443333355555542 1111111111113345778888887444 44456999999999999999
Q ss_pred EccCCCCceEEEEecCCCCCcEEEEEE--cCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEe-CCCcEEEE
Q 007757 380 TFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVW 456 (590)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~lvsg~--~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iw 456 (590)
....+..+..+.+.+... .+.++-. .++.+.+.|..++..+.....-..+ ..+.+.|++..++.+. .++.|.+.
T Consensus 111 ~~~vG~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred EeeeccCCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 988888888888888653 4555555 4799999999999888875543344 8899999999666554 78999999
Q ss_pred ECCCCcEEEEee----cCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 457 EFGIPVVIKYIS----EPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 457 dl~~~~~~~~~~----~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|........ -. .........+.+.|++.++.+.... +.+...|..+............ . ....+.++|
T Consensus 188 ~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~---~-~~~~v~~~p 262 (381)
T COG3391 188 DTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS---G-APRGVAVDP 262 (381)
T ss_pred eCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc---C-CCCceeECC
Confidence 977665553 11 1223345678999999977766554 4888888877654432111111 1 233588999
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCCC---CEEEEEEcC
Q 007757 530 DGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHEG---VCIGCEWHP 571 (590)
Q Consensus 530 dg~~l~sgs~-dg~I~iwd~~t~~~~~~l~~h~~---~V~~v~~sp 571 (590)
+|.++.+... .+.+.+.|..+......+..... .+..+++.+
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9999988854 48999999999888777654332 344555544
No 333
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.02 E-value=0.017 Score=59.48 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=134.3
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCC-CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC
Q 007757 306 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 306 ~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~ 384 (590)
+|.+++.++|+++..||.-.+|-+.-....+..+.... .......++++++.|+-......|+-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 56778556777777777766665433444555555443 33446778898888877666679999999998876555544
Q ss_pred CCce-EEEEecCCCCCcEEEEEE-----------------------cCCcEEEEECCCCceEEEEcccCCceeEEEEeCC
Q 007757 385 KIPY-VVKLNPDDDKQNILLAGM-----------------------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 385 ~~~~-~~~~~~~~~~~~~lvsg~-----------------------~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
..-. ...+..+.+. .. ++|. ....|.-.|+.+|+....+. -...+..+.|+|.
T Consensus 122 ~~~~g~gt~v~n~d~-t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 122 DDWKGYGTWVANSDC-TK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT 198 (386)
T ss_dssp TTEEEEEEEEE-TTS-SE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred cccccccceeeCCCc-cE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence 3322 3444444332 22 2221 12456777888887655443 4567788999997
Q ss_pred CCEEEEEeCCC-----cEEEEECCCC-cEEEEeec-CCCCcccEEEEcCCCCEEEEEEc-----CCeEEEEEccCceeec
Q 007757 441 NRRFVTSSDDK-----SLRVWEFGIP-VVIKYISE-PHMHSMPSISLHPNTNWLAAQSL-----DNQILIYSTRERFQLN 508 (590)
Q Consensus 441 ~~~l~s~s~Dg-----~I~iwdl~~~-~~~~~~~~-~~~~~i~~i~~sp~g~~l~s~s~-----dg~I~iwd~~~~~~~~ 508 (590)
...+++=+..| .-+||-++.. ...+.+.. .....+..=-|.|+|..|..-+. +..|.-+++.+.....
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 66665544333 2366765432 22222211 12333444568899887665332 2345666666543321
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEeCCC----------------cEEEEeCCCCeEEEEEecCC----------C
Q 007757 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG----------------KCWFWDWKSCKVFRTLKCHE----------G 562 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg----------------~I~iwd~~t~~~~~~l~~h~----------~ 562 (590)
+.. ......+-.++||++++-=+.|. -|+++++..+....... |. .
T Consensus 279 -~~~------~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~-h~~sw~v~~~~~q 350 (386)
T PF14583_consen 279 -LME------MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLAR-HDTSWKVLDGDRQ 350 (386)
T ss_dssp -EEE------E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE--------BTTBSS
T ss_pred -EEe------CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeee-ccCcceeecCCCc
Confidence 111 11233466788998886544332 46678887766542221 21 1
Q ss_pred -CEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 563 -VCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 563 -~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.=....|+|++..+|+++...|...||
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp TT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred cCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 124679999877788888888887765
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00021 Score=71.70 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=69.2
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCC-CEEEEEeCCCeEEEEEC
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDT 372 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~ 372 (590)
.+.+|...|..++|+|....+|..++.+.+|+|.|+ .+..++..+..| ..+++++|.-+. ++|..|-..|.|.|||+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dl-et~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDL-ETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEec-ccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 566888999999999995558999999999999999 577788888877 789999999855 56777788999999999
Q ss_pred CCCc
Q 007757 373 ETGQ 376 (590)
Q Consensus 373 ~t~~ 376 (590)
+..+
T Consensus 266 R~~~ 269 (463)
T KOG1645|consen 266 RQPE 269 (463)
T ss_pred cCCC
Confidence 8654
No 335
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.01 E-value=0.0012 Score=67.99 Aligned_cols=216 Identities=15% Similarity=0.201 Sum_probs=126.7
Q ss_pred CeEEEEECCCCcEEEEccCC--CCceEEEEecCCC----CCcEEEEEEc---------C-CcEEEEECCCC-----ceEE
Q 007757 365 KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDD----KQNILLAGMS---------D-KKIVQWDMNTK-----EITQ 423 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~----~~~~lvsg~~---------d-g~I~vwDl~t~-----~~~~ 423 (590)
..|++.|..+.+.+..+... ..+.+++...... ...++++|+. . |.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46888888888877766543 3333333322221 2477887764 2 89999999884 2221
Q ss_pred E-EcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 424 E-YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 424 ~-~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
. -....++|++|+-. .+ +|+++. .+.|++|++.... ....-.......+.++ ...++++++|..-..|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl--~~~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSL--SVFKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEE--EEETTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEE--eccccEEEEEEcccCEEEEEE
Confidence 1 12357899999887 34 455444 4889999998777 4443332222344444 444779999998888888855
Q ss_pred cC-ceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------C--eEEEEEecCC-CCEEEE---
Q 007757 502 RE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-------C--KVFRTLKCHE-GVCIGC--- 567 (590)
Q Consensus 502 ~~-~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-------~--~~~~~l~~h~-~~V~~v--- 567 (590)
.. ...+..... .....+++++.|-+++..+++++.+|.|.++.... + ++......|- ..|+++
T Consensus 157 ~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 157 DEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp ETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred EccCCEEEEEEe---cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 43 122222221 22245577888886767999999999999998752 2 3333333333 456666
Q ss_pred EEcCC--CCC-----EEEEEeCCCcEEE
Q 007757 568 EWHPL--EQS-----KVATCGWDGLIKY 588 (590)
Q Consensus 568 ~~sp~--~~~-----~l~s~g~DG~I~i 588 (590)
.+.|. +.. .++.++.+|.|.+
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEE
Confidence 44441 222 4888888998863
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.00 E-value=0.01 Score=65.16 Aligned_cols=273 Identities=15% Similarity=0.157 Sum_probs=157.1
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCC-Ccee----------EEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVR----------DISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~----------~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|+.++.++.|.-.|. .+++.+..+.... ..+. .+++ .+..++.++.|+.|...|..+|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa-~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDA-KTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEEC-CCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 456777777888888888 6777777654311 1111 1222 234677888899999999999999988
Q ss_pred ccCCCCc--eEEEEecCCCCCcEEEEEEc------CCcEEEEECCCCceEEEEcccCC----------------------
Q 007757 381 FSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLG---------------------- 430 (590)
Q Consensus 381 ~~~~~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~vwDl~t~~~~~~~~~h~~---------------------- 430 (590)
+...... ..+...|.-.+ ..++++.. +|.|+.+|.++|+.+..+..-..
T Consensus 146 ~~~~~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 7653221 11111111111 24555543 68999999999998877543111
Q ss_pred ---------ce-eEEEEeCCCCEEEEEeCC-----C-----------cEEEEECCCCcEEEEeecCCC--------Cccc
Q 007757 431 ---------AV-NTITFVDSNRRFVTSSDD-----K-----------SLRVWEFGIPVVIKYISEPHM--------HSMP 476 (590)
Q Consensus 431 ---------~V-~~i~~~p~~~~l~s~s~D-----g-----------~I~iwdl~~~~~~~~~~~~~~--------~~i~ 476 (590)
.+ ..+++.+...+++.+... + +|.-.|+++++..-.+...+. ....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 01 134555655555555421 2 566778888877665543211 1112
Q ss_pred EEEEcCCCC---EEEEEEcCCeEEEEEccCceeecccc-----cc----c---Cc-------------ccccc-------
Q 007757 477 SISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKK-----RF----A---GH-------------IVAGY------- 521 (590)
Q Consensus 477 ~i~~sp~g~---~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~----~---~~-------------~~~~~------- 521 (590)
-+.+..+|+ .++.+..+|.+.++|..+++.+.... .+ . +. .....
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 222334665 78889999999999998876642100 00 0 00 00000
Q ss_pred ----eEEEEEcCCCCEEEEEeC---------------------------------CCcEEEEeCCCCeEEEEEecCCCCE
Q 007757 522 ----ACQVNFSPDGRFVMSGDG---------------------------------EGKCWFWDWKSCKVFRTLKCHEGVC 564 (590)
Q Consensus 522 ----v~~v~~spdg~~l~sgs~---------------------------------dg~I~iwd~~t~~~~~~l~~h~~~V 564 (590)
-..++++|+..+++.... -|.|.-+|+.+++.+...+......
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~ 464 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW 464 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence 012556666555544332 2568888999999888776432212
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 565 IGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+.... .+.+++.++.||.++.+|
T Consensus 465 ~~~l~t--~g~lvf~g~~~G~l~a~D 488 (527)
T TIGR03075 465 GGVLAT--AGDLVFYGTLEGYFKAFD 488 (527)
T ss_pred CcceEE--CCcEEEEECCCCeEEEEE
Confidence 222111 334777788899999886
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.98 E-value=0.00083 Score=72.80 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=108.9
Q ss_pred CCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCC---
Q 007757 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD--- 396 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~--- 396 (590)
..+.+.+.|. .+.+...++.-- +....+.++++|+++++.+++ .+.+..+..+.......++.|.+..
T Consensus 213 y~~~vSvID~-etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyN-------sE~G~tl~em~a~e~d~~vvfni~~iea 283 (635)
T PRK02888 213 YRSLFTAVDA-ETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYN-------SEEGVTLAEMMAAERDWVVVFNIARIEE 283 (635)
T ss_pred eeEEEEEEEC-ccceEEEEEEeC-CCcccceECCCCCEEEEeccC-------cccCcceeeeccccCceEEEEchHHHHH
Confidence 3456666676 344454444322 244677899999999888753 2333333333333333444444421
Q ss_pred --CCCcEEEEEEcCCcEEEEECCC----C-ceEEEEcccCCceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCcE-----
Q 007757 397 --DKQNILLAGMSDKKIVQWDMNT----K-EITQEYDQHLGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVV----- 463 (590)
Q Consensus 397 --~~~~~lvsg~~dg~I~vwDl~t----~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~~----- 463 (590)
..+.+... .++.|.++|.++ + ..+..+. -......+.++|+|+++++++. +.+|.|.|+.+...
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 11233333 367899999998 3 4444443 4556788999999999877654 88999999977442
Q ss_pred -------EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 464 -------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 464 -------~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
...+. ........+|.++|+...+...|.+|..|++..
T Consensus 361 ~~~~~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22221 233345678999999888889999999999875
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.97 E-value=6.4e-06 Score=86.77 Aligned_cols=203 Identities=14% Similarity=0.205 Sum_probs=126.1
Q ss_pred CceeEEEEecCC--CEEEEEeCCCeEEEEECCCCcEE-EEccCCCCceEEEEecCCCCCcEEEEEE----cCCcEEEEEC
Q 007757 344 KAVRDISFCNDG--TKFLTASYDKNIKYWDTETGQVI-RTFSTGKIPYVVKLNPDDDKQNILLAGM----SDKKIVQWDM 416 (590)
Q Consensus 344 ~~V~~l~fspdg--~~l~s~s~Dg~I~vWd~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~lvsg~----~dg~I~vwDl 416 (590)
..+.|++++-+. ..++.|..+|.|.+-..+...-- ..+..+....|.+..+..-..+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 446666665533 46778888899998877644322 3344444444544444444446777774 3678999999
Q ss_pred CCC--ce--EEEEcc-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC-CCCEEEEE
Q 007757 417 NTK--EI--TQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQ 490 (590)
Q Consensus 417 ~t~--~~--~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~s~ 490 (590)
.++ .+ ...+.. .....++++|..+.+.+++|...+.+.++|++........ .....+..+.+.| .++|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceecc
Confidence 876 11 112222 3455678999988889999999999999999844322211 1334567788899 77888776
Q ss_pred EcCCeEEEEEc-cCceeecccccccCcccccceEEEEEcCC--CCEEEEEeCCCcEEEEeCC
Q 007757 491 SLDNQILIYST-RERFQLNKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 491 s~dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~v~~v~~spd--g~~l~sgs~dg~I~iwd~~ 549 (590)
. ||.|.+||. +.-.................+..++|+|- |.+.+..-..++|+++|+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 999999993 33221111111111111224667999984 4444444466889999975
No 339
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.94 E-value=0.026 Score=59.39 Aligned_cols=274 Identities=10% Similarity=0.110 Sum_probs=148.6
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCC-ee--EEEeccCCCceeEEEEec----CCCEEEEEeCCCeEEEEECCC--C----
Q 007757 309 PKYGHLILSAGMDTKVKIWDVVNSG-KC--MRTYMGHSKAVRDISFCN----DGTKFLTASYDKNIKYWDTET--G---- 375 (590)
Q Consensus 309 p~~g~~L~sgs~Dg~I~iWd~~~~~-~~--~~~~~~h~~~V~~l~fsp----dg~~l~s~s~Dg~I~vWd~~t--~---- 375 (590)
+++...|++||..|.++||+....+ +. +..-..-..+|..|..-. .....++.=.-+.+.||.+.. |
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 3446799999999999999984322 11 111123456788877643 223334445567888887721 1
Q ss_pred ------cEEEEccCCCCceEEEEecCCCC--CcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 376 ------QVIRTFSTGKIPYVVKLNPDDDK--QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 376 ------~~~~~~~~~~~~~~~~~~~~~~~--~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
+.+.........+.+++-+.+.. ..++.+-+.||.+.+|+-+.-.....+.. .--...+++++....|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 11222233444555555554432 47888899999999999876554444443 2233457888888899999
Q ss_pred eCCCcEEEEECCCCcEE-----------------E----EeecCCCCcccEE---EEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 448 SDDKSLRVWEFGIPVVI-----------------K----YISEPHMHSMPSI---SLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~-----------------~----~~~~~~~~~i~~i---~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
+.+..|..|.+..-... + .+.-.-...+..| .++.....+++-+ ...+.+.+...
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G 271 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG 271 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC
Confidence 99888888876321100 0 0000011122222 2222222333322 23344444432
Q ss_pred ceeecccccccCcccccceEEE--EEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCE-EEEEEcCCCCCEEEE
Q 007757 504 RFQLNKKKRFAGHIVAGYACQV--NFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC-IGCEWHPLEQSKVAT 579 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v--~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V-~~v~~sp~~~~~l~s 579 (590)
.+...+.+......-.+..+ ...+.. ..++.++.++.+.||. ..++++..+....+| ..++..+.-..+|++
T Consensus 272 --~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 --SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVS 347 (418)
T ss_pred --eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEE
Confidence 22223333322111111112 112221 2588889999999985 556666655444443 223333334568999
Q ss_pred EeCCCcEEE
Q 007757 580 CGWDGLIKY 588 (590)
Q Consensus 580 ~g~DG~I~i 588 (590)
-+.+|.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 999999875
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.0015 Score=69.42 Aligned_cols=228 Identities=16% Similarity=0.229 Sum_probs=138.6
Q ss_pred CeeEEEeccCCCceeEEEEecCCCEEEEEeC---C-CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC
Q 007757 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASY---D-KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~---D-g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
+.....+..-...+..-.|+|++..++-.+. . ..+.++++.+++.............-.|+|++. .++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~--~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS--KLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCC--EEEEEECCC
Confidence 4444445445566777889998887665432 2 469999999998877777666666777888664 677787777
Q ss_pred Cc--EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeecCCCCcccEEEEcCC
Q 007757 409 KK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 409 g~--I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
|. |+++|+.++...+ +..-.+.-..-.|+|+|++++..++. | .|.+++.......+... ....-..-.|+|+
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~Spd 336 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPD 336 (425)
T ss_pred CCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCC
Confidence 75 6667887776433 44444444467899999998877653 3 46666776655533332 2222227789999
Q ss_pred CCEEEEEEcC-Ce--EEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEe
Q 007757 484 TNWLAAQSLD-NQ--ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 484 g~~l~s~s~d-g~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg--~I~iwd~~t~~~~~~l~ 558 (590)
|++|+..+.. |. |.++++.+.... ..+.. .......+|.++|+.++..+..+ .+..--..+++....+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~---~~lt~---~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKI---RILTS---TYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcE---EEccc---cccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 9999888753 44 666666544321 11111 11122357888888877554332 22222223444444444
Q ss_pred cCCCCEEEEEEcC
Q 007757 559 CHEGVCIGCEWHP 571 (590)
Q Consensus 559 ~h~~~V~~v~~sp 571 (590)
.-.+.+..-+|+|
T Consensus 411 ~~~~~~~~p~w~~ 423 (425)
T COG0823 411 LADGDVRVPAWSP 423 (425)
T ss_pred ccCcceecccccC
Confidence 4445566666655
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.91 E-value=0.0027 Score=66.76 Aligned_cols=234 Identities=12% Similarity=0.078 Sum_probs=129.4
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC------------------------------------------eeEEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG------------------------------------------KCMRT 338 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~------------------------------------------~~~~~ 338 (590)
.|+++.|.+. ..-|+.|...|.|.||...... .+...
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 4889999998 6678888899999998662110 11122
Q ss_pred eccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCC---------CceEEEEe-----cCCCCCcEEEE
Q 007757 339 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---------IPYVVKLN-----PDDDKQNILLA 404 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~---------~~~~~~~~-----~~~~~~~~lvs 404 (590)
+....+.|++++.|.=| +++.|..+|.+.|.|++....+..-.... .+.++.|. -+....-.+++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 23346789999998544 89999999999999999888877632222 22233332 12222357899
Q ss_pred EEcCCcEEEEECC--C-Cce----EEEEcccCCceeEEEEe-CCC--------------------CEEEEEeCCCcEEEE
Q 007757 405 GMSDKKIVQWDMN--T-KEI----TQEYDQHLGAVNTITFV-DSN--------------------RRFVTSSDDKSLRVW 456 (590)
Q Consensus 405 g~~dg~I~vwDl~--t-~~~----~~~~~~h~~~V~~i~~~-p~~--------------------~~l~s~s~Dg~I~iw 456 (590)
|...|.+.+|.+- . +.. ......+.++|..|... .+. .-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999874 1 211 11222456777766643 210 124445557889999
Q ss_pred ECCCCcEEEEeecCCCCcccEEEEc-----CCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCC
Q 007757 457 EFGIPVVIKYISEPHMHSMPSISLH-----PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 457 dl~~~~~~~~~~~~~~~~i~~i~~s-----p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
...+.+....... .......+++- ..+..|++-..+|.|++|.+..-..+........ .....+...+|+++|
T Consensus 241 ~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~-~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 241 KPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP-LDSRRLSSSSISRNG 318 (395)
T ss_dssp -TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----HHHHTT-EE-TTS
T ss_pred eCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc-cccccccccEECCCC
Confidence 9887766655542 22223334442 3566788889999999999987655544433211 112233346778888
Q ss_pred CEEEEEe
Q 007757 532 RFVMSGD 538 (590)
Q Consensus 532 ~~l~sgs 538 (590)
..++-.+
T Consensus 319 di~~~~g 325 (395)
T PF08596_consen 319 DIFYWTG 325 (395)
T ss_dssp -EEEE-S
T ss_pred CEEEEeC
Confidence 8776554
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.029 Score=59.17 Aligned_cols=237 Identities=15% Similarity=0.166 Sum_probs=148.6
Q ss_pred ceeEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE
Q 007757 345 AVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~ 422 (590)
....+...+++..+.... ....+.+.+............+ ..+..+.+.+.. ...+++...++.|.+.|..+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~--~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAG--NKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCC--CeEEEecCCCCeEEEEcCccccee
Confidence 556677888875544433 2234555555522222222223 333445555543 356777777899999998887776
Q ss_pred EEEcccCCceeEEEEeCCCCEEEEEeC---CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEE
Q 007757 423 QEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILI 498 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~---Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~i 498 (590)
.....-. ....+.+.+++..+..+.. ++++.+.|-.+...+..+... ..+ ..+++.|+|..+++.. .++.|.+
T Consensus 110 ~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 110 GSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 6654222 5678999999987776655 688999998888888775432 233 8999999999766665 6789999
Q ss_pred EEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEE-EecCCCCEEEEEEcCCCC
Q 007757 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~ 574 (590)
+|........ .............+.+.++|+|.++...... +.+...|..++..... +..-......+..+| .+
T Consensus 187 i~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-~g 264 (381)
T COG3391 187 IDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-AG 264 (381)
T ss_pred EeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-CC
Confidence 9976654332 1100011112233468999999977665543 5899999999887765 222221456778888 44
Q ss_pred CEEEEE-eCCCcEEE
Q 007757 575 SKVATC-GWDGLIKY 588 (590)
Q Consensus 575 ~~l~s~-g~DG~I~i 588 (590)
..+... +..+.+.+
T Consensus 265 ~~~yv~~~~~~~V~v 279 (381)
T COG3391 265 KAAYVANSQGGTVSV 279 (381)
T ss_pred CEEEEEecCCCeEEE
Confidence 455444 33344443
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.88 E-value=0.005 Score=65.67 Aligned_cols=222 Identities=13% Similarity=0.156 Sum_probs=111.5
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 376 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~ 376 (590)
...-....|.++|+ |++++.++ ||...|+.. ...+... .+.-..++|.+. +.+|+-...+.|.|+.--...
T Consensus 30 ~~~~~p~~ls~npn-gr~v~V~g-~geY~iyt~-~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPN-GRFVLVCG-DGEYEIYTA-LAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TT-SSEEEEEE-TTEEEEEET-TTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCC-CCEEEEEc-CCEEEEEEc-cCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccc
Confidence 34455789999999 88888855 777888874 2222222 134467889884 457777778899997332222
Q ss_pred EEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007757 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
....+.... .+-.+.. +.+|...+ ++.|.+||+.+++.+..+... +|..+.|++++.+++..+.+ ++.|+
T Consensus 101 ~~k~i~~~~--~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 101 VVKSIKLPF--SVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYIL 170 (443)
T ss_dssp TT-----SS---EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred cceEEcCCc--ccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence 222333332 1222332 24455554 448999999999999998643 48999999999999988865 68887
Q ss_pred ECCCC-----------cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEE
Q 007757 457 EFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 457 dl~~~-----------~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
+.... ..+..+.. ....|.+.+|..+ .|+-.+.. .|+.+ ..+... .+..+. ..+.-+
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E-~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~-~i~~ld-----~~~yll 238 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHE-ISERIKSGCWVED--CFIYTTSN-HLKYL--VNGETG-IIAHLD-----KPLYLL 238 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEE-E-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEE-EEEE-S-----S--EEE
T ss_pred EecchhcccccccCchhceEEEEE-ecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcc-eEEEcC-----CceEEE
Confidence 76544 02222211 2456888888755 44443333 55552 222111 111111 122235
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 526 NFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.+.+..+.|+..+.++.|..+.+.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEccCCEEEEEECCCCEEEEEEC
Confidence 556666677777777777666543
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.87 E-value=0.0036 Score=66.50 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=68.0
Q ss_pred EEEECCCC--cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCC
Q 007757 454 RVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 454 ~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
++|++... +.+.....+....+.+++++|+...|+.|+.||.|.+||...+....... .-....++|+|+|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka-------~~~P~~iaWHp~g 311 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA-------EFIPTLIAWHPDG 311 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee-------cccceEEEEcCCC
Confidence 45665433 33344445778899999999999999999999999999987653221111 2335569999999
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 007757 532 RFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 532 ~~l~sgs~dg~I~iwd~~ 549 (590)
.++++|+..|.|.+||+.
T Consensus 312 ai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 312 AIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cEEEEEcCCceEEEEEee
Confidence 999999999999999974
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.76 E-value=0.005 Score=70.14 Aligned_cols=233 Identities=13% Similarity=0.146 Sum_probs=134.6
Q ss_pred CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE
Q 007757 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~ 422 (590)
...|.++.|..+++.++.+..+|.|.+-|.++......-.....+.+++|+++. .+++..+..++|.+-+ .+-.++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~De---e~l~liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDE---ELLALITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCC---cEEEEEeCCcEEEEEe-ccccch
Confidence 358999999999999999999999999999888765555556667777787765 4666666666665532 222222
Q ss_pred EEEcc-----cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-----c
Q 007757 423 QEYDQ-----HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-----L 492 (590)
Q Consensus 423 ~~~~~-----h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-----~ 492 (590)
....- ..+....+-|-.....| -|+ .|.....+........... .....-+.|+|--+|.++++.. .
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hccccccccccccccceecccccceee-ecc-hhhhcccccccccccccch-hhccCCceEEEccCCcEEEEEEEeccCC
Confidence 22111 11222233332211111 111 1111111111111000000 1222346799999999999843 2
Q ss_pred CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe---CCCcEEEEeCCC---CeEEEEEecCCCCEEE
Q 007757 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWKS---CKVFRTLKCHEGVCIG 566 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~dg~I~iwd~~t---~~~~~~l~~h~~~V~~ 566 (590)
...|++||... . +.... ....+.-.+++|-|.|.++++-. +++.|.+|.-+. |...-.+......|..
T Consensus 221 ~RkirV~drEg-~-Lns~s----e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 221 TRKIRVYDREG-A-LNSTS----EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ceeEEEecccc-h-hhccc----CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 26899999762 1 11111 11122233699999999998753 566899998432 2222223334445899
Q ss_pred EEEcCCCCCEEEE---EeCCCcEEEe
Q 007757 567 CEWHPLEQSKVAT---CGWDGLIKYW 589 (590)
Q Consensus 567 v~~sp~~~~~l~s---~g~DG~I~iW 589 (590)
++|+. ++.+|+. +.....|++|
T Consensus 295 L~Wns-~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 295 LAWNS-NSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eeecC-CCCceeeeecccccceEEEE
Confidence 99999 6778877 5555559998
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.75 E-value=0.002 Score=68.39 Aligned_cols=113 Identities=13% Similarity=0.205 Sum_probs=79.1
Q ss_pred ceeEEEEec-CCCEEEEE----eCCCe----EEEEECCCCcE----EEEccCCCCceEEEEecCCCCCcEEEEEEcCCcE
Q 007757 345 AVRDISFCN-DGTKFLTA----SYDKN----IKYWDTETGQV----IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 345 ~V~~l~fsp-dg~~l~s~----s~Dg~----I~vWd~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 411 (590)
...++.|+. ++..+.+. +.+|. -++|++..++. +.++.....+.+++++++. ..++.|+.||.|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E---~kLvlGC~DgSi 283 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE---DKLVLGCEDGSI 283 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc---ceEEEEecCCeE
Confidence 346677776 44555543 23343 35566655443 2344556667777777765 469999999999
Q ss_pred EEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 007757 412 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 412 ~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
.+||...+... +....-..+.++|+|+|..|++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99999876332 22345567899999999999999999999999986443
No 347
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.02 Score=58.07 Aligned_cols=223 Identities=13% Similarity=0.060 Sum_probs=125.5
Q ss_pred EEecCCC-EEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc-
Q 007757 350 SFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ- 427 (590)
Q Consensus 350 ~fspdg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~- 427 (590)
.|.++.. ++.+--..+.|.-|+..+++...............+.. . ..|+++ +..+.+++..++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~---~-g~Lv~~--~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDA---G-GRLIAC--EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecC---C-CeEEEE--ccccEEEeccCCceeEEeccc
Confidence 3555554 34444456788888887665433222222222222222 1 233333 23456666665555333211
Q ss_pred ----cCCceeEEEEeCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 428 ----HLGAVNTITFVDSNRRFVTSSD-----------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 428 ----h~~~V~~i~~~p~~~~l~s~s~-----------Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
.....+.+.+.|+|.+.++... -|.|+.+|. ....++.+ ..+...-+.|+|+|+++.|+.+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-cCcEEecCceEECCCCCEEEEEeC
Confidence 2245678888899877666544 133444443 33333333 234556778999999988887765
Q ss_pred C-CeEEEEEccC--ceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEecCCCCEEEEE
Q 007757 493 D-NQILIYSTRE--RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 493 d-g~I~iwd~~~--~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
. +.|.-|++.. ...-.....+......+..-.++...+|.+.+++-..| .|.+|+.. ++++..+..+...+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 4 7888887752 11111100011111123444577788888876555554 89999987 999999998877788888
Q ss_pred EcCCCCCEEEEEe
Q 007757 569 WHPLEQSKVATCG 581 (590)
Q Consensus 569 ~sp~~~~~l~s~g 581 (590)
|--.+.+.|+..+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 8643334444333
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.68 E-value=0.0049 Score=64.82 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=120.0
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-----
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----- 418 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t----- 418 (590)
.|+.+.|+++..-|++|...|.|.||.....+... .-... ..-..+.+. ...++.-.+.|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP--DLDYNFRRF---------SLNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc--ccCcccccc---------cccCCCcceEEehhhCCcc
Confidence 58899999999999999999999999876544332 00000 000011110 00111222333332
Q ss_pred ---C-ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-------CCCCcccEEEEcC-----
Q 007757 419 ---K-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------PHMHSMPSISLHP----- 482 (590)
Q Consensus 419 ---~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-------~~~~~i~~i~~sp----- 482 (590)
+ .+...+....++|++++.+.-| +++.|..+|.+.|.|+|.+..+..... .....++++.|..
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred cccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 1 2334455568999999998555 999999999999999999888766322 1233467777762
Q ss_pred CC---CEEEEEEcCCeEEEEEccC----ceeecccccccCcccccceEEEE-EcCC-C-------------------CEE
Q 007757 483 NT---NWLAAQSLDNQILIYSTRE----RFQLNKKKRFAGHIVAGYACQVN-FSPD-G-------------------RFV 534 (590)
Q Consensus 483 ~g---~~l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~v~~v~-~spd-g-------------------~~l 534 (590)
++ -.|++|+..|.+.+|.+.- .+.......... ..+.+..+. |+.+ | .-+
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~--~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTN--HDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecccc--CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 22 4788999999999998741 111111111101 122232222 2211 0 123
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcC----CCCCEEEEEeCCCcEEEe
Q 007757 535 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP----LEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp----~~~~~l~s~g~DG~I~iW 589 (590)
+...++..++++...+.+..++.....-.+..+.+-+ ..+..|++-..+|.|+++
T Consensus 229 vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred EEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 3444567899999988887666553322344445531 145578888889999986
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.058 Score=57.36 Aligned_cols=168 Identities=11% Similarity=0.125 Sum_probs=94.1
Q ss_pred cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc------eEEEEe-cC
Q 007757 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP------YVVKLN-PD 395 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~------~~~~~~-~~ 395 (590)
.|.||+. .|+++..+.--.+.|.++.|+.+. .|++...||.++++|+. |+. .+..+... .+..+. ..
T Consensus 62 ~I~iys~--sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSS--SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECC--CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence 4999986 677777765555899999998754 56677789999999986 333 32222111 111111 11
Q ss_pred CCCCcEEEEEEcCCcEEEEECCCCc-eEEEE---cc-----cCC-ceeE-EEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 007757 396 DDKQNILLAGMSDKKIVQWDMNTKE-ITQEY---DQ-----HLG-AVNT-ITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~vwDl~t~~-~~~~~---~~-----h~~-~V~~-i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
...+ +++-..++.|++..--... ....+ .. +.. .+.. ..++.+....+....++.+.+.+-.....
T Consensus 136 ~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 136 YKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence 1122 3333445555554332221 11111 00 000 1111 23444445555555556666444222111
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
+ ...+++..|++||++++||.-..+|.+.+.+..-
T Consensus 213 --i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 213 --I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred --c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 1 2346899999999999999999999998887543
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.64 E-value=0.071 Score=58.60 Aligned_cols=241 Identities=14% Similarity=0.164 Sum_probs=137.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEecc--CCC--ceeEEEEecCCCEEEEEe------CCCeEEEEECCCCcEEEEc
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMG--HSK--AVRDISFCNDGTKFLTAS------YDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--h~~--~V~~l~fspdg~~l~s~s------~Dg~I~vWd~~t~~~~~~~ 381 (590)
+..++.++.|+.|.-.|. .+++.+..... +.. .+++--.--++ .++.++ .+|.|..+|.++|+.+..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa-~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDA-KTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 346777888999999998 67877766542 111 12111111144 445443 2689999999999998876
Q ss_pred cCCCCceE-------------------------------EEEecCCCCCcEEEEEEcC-----C-----------cEEEE
Q 007757 382 STGKIPYV-------------------------------VKLNPDDDKQNILLAGMSD-----K-----------KIVQW 414 (590)
Q Consensus 382 ~~~~~~~~-------------------------------~~~~~~~~~~~~lvsg~~d-----g-----------~I~vw 414 (590)
........ .....+. ...+++.+..+ + .|.-.
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 54211100 0111222 22455555422 2 68888
Q ss_pred ECCCCceEEEEcccCCc---------eeEEEEeCCCC---EEEEEeCCCcEEEEECCCCcEEEE--------ee---cCC
Q 007757 415 DMNTKEITQEYDQHLGA---------VNTITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKY--------IS---EPH 471 (590)
Q Consensus 415 Dl~t~~~~~~~~~h~~~---------V~~i~~~p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~--------~~---~~~ 471 (590)
|+++|++...++..... ..-+.+..+++ .++.+..+|.+++.|-.+++.+.. .. .+.
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 99999998887642221 11122223565 677899999999999988876521 10 000
Q ss_pred C-Cc----------------------------ccEEEEcCCCCEEEEEEcC-----------------------------
Q 007757 472 M-HS----------------------------MPSISLHPNTNWLAAQSLD----------------------------- 493 (590)
Q Consensus 472 ~-~~----------------------------i~~i~~sp~g~~l~s~s~d----------------------------- 493 (590)
. .+ -..++++|...++++...+
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 0 00 1125667766666655444
Q ss_pred ----CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 007757 494 ----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 494 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
|.|.-+|+.+++..-....- .....+. + .-.+.+++.++.+|.++.+|.++|+.+..++...
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~-~p~~~~~---l--~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKED-FPLWGGV---L--ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCC-CCCCCcc---e--EECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 23444454444333222110 0000111 1 1145577788889999999999999999988654
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.63 E-value=0.016 Score=59.56 Aligned_cols=215 Identities=7% Similarity=0.125 Sum_probs=116.5
Q ss_pred cEEEEEccCCCeeEEEecc-CCCceeEEEEec---C----CCEEEEEeC----------CCeEEEEECCCC-----cEE-
Q 007757 323 KVKIWDVVNSGKCMRTYMG-HSKAVRDISFCN---D----GTKFLTASY----------DKNIKYWDTETG-----QVI- 378 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fsp---d----g~~l~s~s~----------Dg~I~vWd~~t~-----~~~- 378 (590)
.|+|.|. .+...+.++.- ....+.+++... + ..+|+.|+. .|.|.++++... +..
T Consensus 3 ~i~l~d~-~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDP-TTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEET-TTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeC-CCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4666666 34444444332 223344444322 2 356666643 289999999884 222
Q ss_pred -EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc-eEEEEcc-cCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007757 379 -RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~-~~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
........+++++.. . ..++++. .+.|.+|++...+ +...-.. ....+.++... ++++++|..-..|.+
T Consensus 82 i~~~~~~g~V~ai~~~--~---~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--N---GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEESS-EEEEEEE--T---TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEeecCcceEhhhh--C---CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 223334444444433 2 2344443 5899999998877 4443322 22356666665 569999998888988
Q ss_pred EECCC-Cc-EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceee----c-ccccccCcccccceEEE---
Q 007757 456 WEFGI-PV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL----N-KKKRFAGHIVAGYACQV--- 525 (590)
Q Consensus 456 wdl~~-~~-~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~----~-~~~~~~~~~~~~~v~~v--- 525 (590)
+.++. .. ....-.......++++.+-++++.++++..+|.|.++........ . .+...........++++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 86543 22 332223344556888888866679999999999999987531110 0 11111111123345445
Q ss_pred EEcC--CCC------EEEEEeCCCcEEEE
Q 007757 526 NFSP--DGR------FVMSGDGEGKCWFW 546 (590)
Q Consensus 526 ~~sp--dg~------~l~sgs~dg~I~iw 546 (590)
++.| .+. .++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4445 222 47778888888743
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.035 Score=59.06 Aligned_cols=191 Identities=17% Similarity=0.213 Sum_probs=97.9
Q ss_pred eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc------eEEEEcccCCceeEEEEeC
Q 007757 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------ITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~------~~~~~~~h~~~V~~i~~~p 439 (590)
.|.||+.. |+.+..+.-.. ...+.+.+... ..|++-..||.+++||+.... .+....-....+..+.+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECC-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC
Confidence 36666543 44444443332 33444444433 357788899999999987333 1111111112222223333
Q ss_pred CCCEEEEEeCCCcEEEEE-CCCCcEEEEeec-C------CCC-cccE-EEEcCCCCEEEEEEcCCeEEEEEccCceeecc
Q 007757 440 SNRRFVTSSDDKSLRVWE-FGIPVVIKYISE-P------HMH-SMPS-ISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 509 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwd-l~~~~~~~~~~~-~------~~~-~i~~-i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~ 509 (590)
+| .++. ..++.+.+.. +..+...+.+.. + +.. .... ..++.+....+....++.+.+.+......
T Consensus 138 ~G-ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 138 NG-IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred CC-EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 44 2222 2344444432 222211111111 0 000 0111 23444455555555556666444332111
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCCEEEEEEcC
Q 007757 510 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHP 571 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp 571 (590)
.. ..+.+..+++||+|++||.-..+|.+.+.+..-.+.+..+... ......+.|.-
T Consensus 213 ---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 213 ---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred ---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 11 1356888999999999999999999999987666677666654 34556777775
No 353
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.60 E-value=0.05 Score=58.07 Aligned_cols=242 Identities=14% Similarity=0.236 Sum_probs=125.0
Q ss_pred CeeEEEEcCCCCCEEE-EEeCCC----cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC----------
Q 007757 301 GVSAIRFFPKYGHLIL-SAGMDT----KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK---------- 365 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~-sgs~Dg----~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg---------- 365 (590)
.+..++++|+ +++|| +-+..| .|+++|+ .+++.+....... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl-~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDL-ETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTT-SSEEEEEEEETTSSEEEEEEEET-TTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCC-CCEEEEEecCCCCceEEEEEEEC-CCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3446789999 66665 445555 4999999 5666554321111 122399999988887765443
Q ss_pred -eEEEEECCCCcE--EEEccCCCCce-EEEEecCCCCCcEEEEEEcC---CcEEEEECCCC----ceEEEEcccCCce-e
Q 007757 366 -NIKYWDTETGQV--IRTFSTGKIPY-VVKLNPDDDKQNILLAGMSD---KKIVQWDMNTK----EITQEYDQHLGAV-N 433 (590)
Q Consensus 366 -~I~vWd~~t~~~--~~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~d---g~I~vwDl~t~----~~~~~~~~h~~~V-~ 433 (590)
.|..|.+.+... ...+....... .+.+....++..+++..... ..|++.|+..+ .....+......+ .
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 378888877643 24444433333 34444444444455544443 34888898875 2233333333333 3
Q ss_pred EEEEeCCCCEEEEEe---CCCcEEEEECCCCcE---EEEeecCCCC--cccEEEEcCCCCEEEEEE-cCC--eEEEEEcc
Q 007757 434 TITFVDSNRRFVTSS---DDKSLRVWEFGIPVV---IKYISEPHMH--SMPSISLHPNTNWLAAQS-LDN--QILIYSTR 502 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s---~Dg~I~iwdl~~~~~---~~~~~~~~~~--~i~~i~~sp~g~~l~s~s-~dg--~I~iwd~~ 502 (590)
.+... .+.+++.+. ..+.|...++..... ...+. ++.. .+..+.. .+.+|+... .++ .|+++++.
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 34333 444444443 245677778876652 22332 3333 4444444 455555544 443 58888887
Q ss_pred -CceeecccccccCcccccceEEEEEcCCCCEEEEE-e---CCCcEEEEeCCCCeEE
Q 007757 503 -ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-D---GEGKCWFWDWKSCKVF 554 (590)
Q Consensus 503 -~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s---~dg~I~iwd~~t~~~~ 554 (590)
..... ..... . .+.+..+...+++..+... + .-++++.||+.+++..
T Consensus 358 ~~~~~~-~~~~p-~---~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 358 DGKESR-EIPLP-E---AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -TEEEE-EEESS-S---SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCcEEe-eecCC-c---ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 33222 22211 1 2334445555555544322 2 2357888888887754
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00046 Score=74.09 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=99.1
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc
Q 007757 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 510 (590)
.|.--++...+.+++.|+.-|.|++|+-..+.....-.......+..++++++..++|.|+..|.|.+|-+.........
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 34444556678899999999999999977666555544444556677888999999999999999999988763322211
Q ss_pred ccccCc-ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEecCCCCEEEEEEc
Q 007757 511 KRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 511 ~~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~----~~~~~l~~h~~~V~~v~~s 570 (590)
..-..+ .+...|++++|++++..|++|+..|+|.+-.+.+. ...+.+-.-.+.|..+...
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 111111 12577999999999999999999999999888772 1122223345567777664
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0003 Score=76.47 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=121.6
Q ss_pred eEEEEecCCCEEEEEeC----CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE
Q 007757 347 RDISFCNDGTKFLTASY----DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 347 ~~l~fspdg~~l~s~s~----Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~ 422 (590)
+-..|+|...+|++++. .|.|.|| .++|++-+....+-....+||+|.. .+|+.|-.-|.+.+|...+.+.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~---~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEE---FVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHH---HHHhhccccceeEEEecCCceee
Confidence 34579998889988875 4788888 4667655544444444557777643 56778888899999999888777
Q ss_pred EEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee--c-CCCCc--ccEEEEcCCCC------EEEEEE
Q 007757 423 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS--E-PHMHS--MPSISLHPNTN------WLAAQS 491 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~--~-~~~~~--i~~i~~sp~g~------~l~s~s 491 (590)
.....|..+|..+.|+++|..++++..-|.|.+|.+.....+.... . ..... ..|..+++++. ..++.+
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 7777899999999999999999999999999999876332222211 0 01112 23334455421 123333
Q ss_pred cCCeEE-EEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 007757 492 LDNQIL-IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 492 ~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
.++.+- .++.+.. .. .... .-.=.|+|..++.++.+|+|+-.| ..|++....+
T Consensus 175 De~alD~~fnwk~~--------~a----~rs~-~ksgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k 228 (1416)
T KOG3617|consen 175 DESALDEPFNWKES--------LA----ERSD-EKSGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHK 228 (1416)
T ss_pred chhhhcccccCccc--------hh----hccc-cccCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEE
Confidence 333222 2222110 00 0000 011246788888888999998888 4555544444
No 356
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.56 E-value=0.023 Score=53.66 Aligned_cols=218 Identities=15% Similarity=0.150 Sum_probs=122.2
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEE-cCCcEEEEECC--CCceEEEEc-----c
Q 007757 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMN--TKEITQEYD-----Q 427 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~-~dg~I~vwDl~--t~~~~~~~~-----~ 427 (590)
.++.+-=..|.|.-||+.+.+..+.-.... +..-.+.|.......+++++ ..-.|.-||.. ......++. .
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p-~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP-PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC-cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 344444445777779988866554433222 22233333333334444444 44455668843 223333321 1
Q ss_pred cCCceeEEEEeCCCCEEEEEeC---------CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEE-EcCCeEE
Q 007757 428 HLGAVNTITFVDSNRRFVTSSD---------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQIL 497 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~---------Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~-s~dg~I~ 497 (590)
.....+.-..+|+|++++-.-. .|.++.|-..... ..+. ....--..++|+.+.+.+... +.+-.|.
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v--~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV--ELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCc--eeee-hhccCCccccccccCcEEEEEccCceEEe
Confidence 2345666778899988554322 2445555443221 1111 122233568888777665544 5556676
Q ss_pred EEE--ccCceeecccccc--------cCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEE
Q 007757 498 IYS--TRERFQLNKKKRF--------AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 567 (590)
Q Consensus 498 iwd--~~~~~~~~~~~~~--------~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v 567 (590)
-|| ..++...++...+ ...... .+++..+|.+.++.-..|+|...|..+|+.+..++.....|++|
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PD----Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPD----GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCC----cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 677 4444333222211 111111 24556688888888899999999999999999999989999999
Q ss_pred EEcCCCCCEE-EEEe
Q 007757 568 EWHPLEQSKV-ATCG 581 (590)
Q Consensus 568 ~~sp~~~~~l-~s~g 581 (590)
+|--.+-..| +|+.
T Consensus 260 cFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 260 CFGGKNLDILYVTTA 274 (310)
T ss_pred EecCCCccEEEEEeh
Confidence 9964333344 4443
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.52 E-value=0.031 Score=58.26 Aligned_cols=244 Identities=16% Similarity=0.228 Sum_probs=122.7
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC----------------
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG---------------- 384 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~---------------- 384 (590)
.+.+.|||+ .+++. ..+......+....|+|+|+.|+... ++.|.++++.++...+....+
T Consensus 22 ~~~y~i~d~-~~~~~-~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDI-ETGEI-TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEET-TTTEE-EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEec-CCCce-EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 467899999 44433 33333367889999999999998885 689999999888554433222
Q ss_pred --CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccC---CceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007757 385 --KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL---GAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 385 --~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~---~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
.....+.|+|++. .+++.-..+..|..+.+- .+.... ..+..+.+---|..... -.+.|+|+.
T Consensus 99 v~~~~~~~~WSpd~~--~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~ 166 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSK--YLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLA 166 (353)
T ss_dssp TSSSSBSEEE-TTSS--EEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESS
T ss_pred ccccccceEECCCCC--EEEEEEECCcCCceEEee------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECC
Confidence 1123455666543 455555555555444321 111111 12334443322222111 136678887
Q ss_pred CCcEEE-Eee---cCCCCcccEEEEcCCCCEEEEEEc--C---CeEEEEEccCceeecccc-cccCcccccceEEEEEc-
Q 007757 460 IPVVIK-YIS---EPHMHSMPSISLHPNTNWLAAQSL--D---NQILIYSTRERFQLNKKK-RFAGHIVAGYACQVNFS- 528 (590)
Q Consensus 460 ~~~~~~-~~~---~~~~~~i~~i~~sp~g~~l~s~s~--d---g~I~iwd~~~~~~~~~~~-~~~~~~~~~~v~~v~~s- 528 (590)
++.... ... ......+..+.|.+++..|++.-. + -.+.++|..++....... ...+-. . ....+.|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-~-~~~~~~~~~ 244 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-D-VYDPPHFLG 244 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-S-SSSEEEE-T
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-e-eeccccccc
Confidence 665432 111 235567889999999984444432 2 235666765533221111 111111 1 11134444
Q ss_pred CCCC-EEEEEeCCCc--EEEEeCCCCeEEEEEecCCCCEEE-EEEcCCCCCEEEEEeC
Q 007757 529 PDGR-FVMSGDGEGK--CWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGW 582 (590)
Q Consensus 529 pdg~-~l~sgs~dg~--I~iwd~~t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~ 582 (590)
+++. +|.....+|. |++++...+... .+....-.|.. +.|.+.+..+.+++..
T Consensus 245 ~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 245 PDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp TTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred CCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecC
Confidence 5544 5555556665 555666666533 44434445644 6777755555556654
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.51 E-value=0.12 Score=53.95 Aligned_cols=263 Identities=14% Similarity=0.187 Sum_probs=136.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEE-Eecc-------C---------CCceeEEEEecCCCEEEEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMG-------H---------SKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~-------h---------~~~V~~l~fspdg~~l~s~ 361 (590)
...+....|+|+ |+.|+-.. ++.|.++++. .+...+ +..| - -+.-..+.|||||++|+..
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~-~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLA-TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESST-TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECC-CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 677899999999 88887776 5789999873 343322 2222 0 1223578899999999987
Q ss_pred eCC-CeEEEEEC---CCCcEEEEccCCCCceEEEEe-cCCCCCcEEEEEEcCCcEEEEECCCCceEE-EE----cccCCc
Q 007757 362 SYD-KNIKYWDT---ETGQVIRTFSTGKIPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EY----DQHLGA 431 (590)
Q Consensus 362 s~D-g~I~vWd~---~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~-~~----~~h~~~ 431 (590)
..| ..|..+.+ ..... ..+....+. |.....+ ..-.+.++|+.+++... .. ..-..-
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YPk~G~~n------p~v~l~v~~~~~~~~~~~~~~~~~~~~~~y 185 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDS-------QYPEVESIRYPKAGDPN------PRVSLFVVDLASGKTTELDPPNSLNPQDYY 185 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--BTTS---------EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred EECCcCCceEEeeccCCccc-------cCCcccccccCCCCCcC------CceEEEEEECCCCcEEEeeeccccCCCccC
Confidence 665 33333322 11110 011222221 1111111 11246678888876532 11 123456
Q ss_pred eeEEEEeCCCCEEEEEe--CCC---cEEEEECCCCcEEEEeecCCCCc---ccEEEEc-CCCC-EEEEEEcCCe--EEEE
Q 007757 432 VNTITFVDSNRRFVTSS--DDK---SLRVWEFGIPVVIKYISEPHMHS---MPSISLH-PNTN-WLAAQSLDNQ--ILIY 499 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s--~Dg---~I~iwdl~~~~~~~~~~~~~~~~---i~~i~~s-p~g~-~l~s~s~dg~--I~iw 499 (590)
+..+.|.+++..|+..- .+. .+.++|..++............. ...+.+. +++. +|.....+|. |.++
T Consensus 186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 88999999998444432 222 46677776654433333222222 2355554 5554 5555556665 4555
Q ss_pred EccCceeecccccccCcccccce-EEEEEcCCCCEEE-EEeC----CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCC
Q 007757 500 STRERFQLNKKKRFAGHIVAGYA-CQVNFSPDGRFVM-SGDG----EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 573 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~v-~~v~~spdg~~l~-sgs~----dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~ 573 (590)
+...+... ....|. -.| .-+.++++++.|+ ++.. ...|+.-++..+..+..+....+....+.|+|++
T Consensus 266 ~~~~~~~~---~lT~G~---~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 266 DLDGGKPR---QLTSGD---WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp ETTSSEEE---ESS-SS---S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred ccccccee---ccccCc---eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 55544311 111121 223 2377888877665 4443 2356666777334445555444433689999965
Q ss_pred CCEEEEEeCC
Q 007757 574 QSKVATCGWD 583 (590)
Q Consensus 574 ~~~l~s~g~D 583 (590)
..++.+++.-
T Consensus 340 ~y~v~~~s~~ 349 (353)
T PF00930_consen 340 KYYVDTYSGP 349 (353)
T ss_dssp SEEEEEEESS
T ss_pred CEEEEEEcCC
Confidence 5556666543
No 359
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.48 E-value=0.076 Score=51.96 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=121.5
Q ss_pred cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC--cEEEEECCCCceEEEEccc-CCceeEEEEeCCCCEEEEEeCCCc
Q 007757 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+.+.++.+......-.+....+ +.++-+.+.-| .|+.+|+.+++......-. .----.|+.. +++.+..+=.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 4556666655555555544221 25566666555 7999999999877655322 2223445555 3456666778899
Q ss_pred EEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
..+||..+.+.+..+.-+ ..-..++ .++..|+.......|+++|..+......+........-..+..+.|- +|.
T Consensus 112 ~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999998888888643 3455666 46777888777888999998765444444333332223445566665 566
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEec------------C---CCCEEEEEEcCCCCCEEEEEe
Q 007757 533 FVMSGDGEGKCWFWDWKSCKVFRTLKC------------H---EGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~l~~------------h---~~~V~~v~~sp~~~~~l~s~g 581 (590)
..|=.=....|...|..+|+.+..+.. + ....+.++|.|..+.+++||=
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 666555677889999999999887742 1 246799999997777777763
No 360
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.47 E-value=0.071 Score=59.95 Aligned_cols=281 Identities=14% Similarity=0.159 Sum_probs=146.1
Q ss_pred CCCeeEEEEcCC--CCC---EEEEEeCCCcEEEEEccCCCeeEEEe-cc---CCCceeEEEEecCCCEEEEEeCCCeEEE
Q 007757 299 TKGVSAIRFFPK--YGH---LILSAGMDTKVKIWDVVNSGKCMRTY-MG---HSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 299 ~~~V~~l~fsp~--~g~---~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~---h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
...|.|+.++|- ..+ +++.|..+..+.+--...+...+... .+ -...|.-..|--|..+|+++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 457999999975 233 88999887777665553344333322 11 2234555566667889999999999877
Q ss_pred EE--CCCCcEEEE--ccCCCCceE-EEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEE-EeC-C-C
Q 007757 370 WD--TETGQVIRT--FSTGKIPYV-VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT-FVD-S-N 441 (590)
Q Consensus 370 Wd--~~t~~~~~~--~~~~~~~~~-~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~-~~p-~-~ 441 (590)
+- ..++..-.. ...+..+.. -.|.... . . -+.+.+|.-..+|.-+. +++.+-- ....+..+| |+. . .
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~-~-t-~vfa~sdrP~viY~~n~-kLv~spl-s~kev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKS-R-T-AVFALSDRPTVIYSSNG-KLVYSPL-SLKEVNHMCPFNSDAYP 684 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCC-c-e-EEEEeCCCCEEEEecCC-cEEEecc-chHHhhhhcccccccCC
Confidence 64 455543222 223333333 3333322 2 2 23333445455554332 2221110 011111111 221 1 2
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC--------------CeEEEEEccCceee
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--------------NQILIYSTRERFQL 507 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d--------------g~I~iwd~~~~~~~ 507 (590)
..++++. .+.+++.-++.-..+....-+.......+++.+....+++.+.. ..++++|-++-..+
T Consensus 685 d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 685 DSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred ceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 2344443 45677776654333222223566677888888866555555422 23566666553322
Q ss_pred cccccccCcccccceEEEEEcCC-CCEEEEEeC----------CCcEEEEeCCCCeEEEEEec--CCCCEEEEEEcCCCC
Q 007757 508 NKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDG----------EGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQ 574 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spd-g~~l~sgs~----------dg~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~ 574 (590)
. ...+......-.++++.|..| +.++++|.. .|+|.+|.+..++.+..... -.+.|.++.-. ++
T Consensus 764 ~-~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ng 840 (1096)
T KOG1897|consen 764 S-SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NG 840 (1096)
T ss_pred e-eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CC
Confidence 2 222333323445666778888 778888763 57888888766433333322 23455555443 45
Q ss_pred CEEEEEeCCCcEEEeC
Q 007757 575 SKVATCGWDGLIKYWD 590 (590)
Q Consensus 575 ~~l~s~g~DG~I~iWD 590 (590)
.+||.-+ ..|++|+
T Consensus 841 kllA~In--~~vrLye 854 (1096)
T KOG1897|consen 841 KLLAGIN--QSVRLYE 854 (1096)
T ss_pred eEEEecC--cEEEEEE
Confidence 5565544 4677763
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.00023 Score=66.69 Aligned_cols=141 Identities=11% Similarity=0.028 Sum_probs=87.4
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccce
Q 007757 443 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
.+...+.+|.|+-++++..+........+... .....-+..+++|+.+|.|.+|................ ....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~---e~i~ 105 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE---ESID 105 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccc---ccce
Confidence 45667788999888886543322111111111 12222356799999999999998763211111111111 1223
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-CCEEEEEEcCCCCCEEEEE--eCCCcEEEeC
Q 007757 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATC--GWDGLIKYWD 590 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~--g~DG~I~iWD 590 (590)
+.+.--.++.+.+++..+|.|+.|++.-.+.+.....|. .++.....+. ...+|+.+ |.|..++.||
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcc
Confidence 334444567789999999999999999999888887777 4555554444 45566666 7777777775
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.0003 Score=45.74 Aligned_cols=38 Identities=39% Similarity=0.740 Sum_probs=34.6
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd 328 (590)
+++..+..|...|.++.|++. +.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 466788899999999999998 79999999999999996
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.092 Score=51.17 Aligned_cols=209 Identities=15% Similarity=0.124 Sum_probs=120.2
Q ss_pred eEEEEecC-CCEEEEEeCCCe-EEEEECCCCcEEEEccCC---CCceEEEEecCCCCCcEEEEEEc-----CCcEEEEEC
Q 007757 347 RDISFCND-GTKFLTASYDKN-IKYWDTETGQVIRTFSTG---KIPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDM 416 (590)
Q Consensus 347 ~~l~fspd-g~~l~s~s~Dg~-I~vWd~~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~lvsg~~-----dg~I~vwDl 416 (590)
..|+|+|. ..-++.+-.-|+ ..++|....+...++... +.--.-.|++++ .+|.+.-. .|.|-+||.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG---~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG---RLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC---cEEEeecCCCCCCCceEEEEec
Confidence 45677773 334445544443 567888887766555332 222233455544 46666543 378999999
Q ss_pred CCC-ceEEEEcccCCceeEEEEeCCCCEEEEEeC------------------CCcEEEEECCCCcEEEEeecC---CCCc
Q 007757 417 NTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSD------------------DKSLRVWEFGIPVVIKYISEP---HMHS 474 (590)
Q Consensus 417 ~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~------------------Dg~I~iwdl~~~~~~~~~~~~---~~~~ 474 (590)
+.+ +.+-++..|.-.-..+.|.+||+.++.+.. .-++.+.|..++..+.....+ +.-+
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 865 566778888888889999999999887642 113334443344433333222 4456
Q ss_pred ccEEEEcCCCCEEEEEEcCCeE-----EEEEccCceeeccccccc--CcccccceEEEEEcCCCCEEEEEeC-CCcEEEE
Q 007757 475 MPSISLHPNTNWLAAQSLDNQI-----LIYSTRERFQLNKKKRFA--GHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFW 546 (590)
Q Consensus 475 i~~i~~sp~g~~l~s~s~dg~I-----~iwd~~~~~~~~~~~~~~--~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iw 546 (590)
|..+...++|..++.|-..|.- .+=-...+..+..+.... -.....|+-+|+.+.+..+++..+- .+...+|
T Consensus 228 iRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~ 307 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW 307 (366)
T ss_pred eeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence 7888888888766665433320 000001111111111000 0012456777888876667666554 4557789
Q ss_pred eCCCCeEEEEEe
Q 007757 547 DWKSCKVFRTLK 558 (590)
Q Consensus 547 d~~t~~~~~~l~ 558 (590)
|..+|..+..-.
T Consensus 308 da~tG~vv~~a~ 319 (366)
T COG3490 308 DAATGAVVSEAA 319 (366)
T ss_pred EcCCCcEEeccc
Confidence 999999876543
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.42 E-value=0.14 Score=50.16 Aligned_cols=200 Identities=15% Similarity=0.184 Sum_probs=109.6
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccC-CCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
+.+.+-...|..|+|.|+.+.++++....+.|...+. .++.++.+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3556667779999999986778888888888877776 57777776543 35678899988887777666689999998
Q ss_pred CCCCc------EEEEccCC------CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC---CceEEE--E------ccc
Q 007757 372 TETGQ------VIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---KEITQE--Y------DQH 428 (590)
Q Consensus 372 ~~t~~------~~~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t---~~~~~~--~------~~h 428 (590)
+.... ....+..+ ....-+++.+.. +.|+++-...-..+|.+.. ...+.. . ...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~---~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT---NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTT---TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCC---CEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 83321 11222221 223566776644 3344555555555655543 211111 1 113
Q ss_pred CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCC--------CCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007757 429 LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPH--------MHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 429 ~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~--------~~~i~~i~~sp~g~~l~s~s~dg~I~iw 499 (590)
...+.+++++|... +++....+..|..+| ..+..+..+.... ....-.|++.++|++.++ +.-+..++|
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 34578899998754 556666677888888 4555555544322 124678999999865554 566665554
No 365
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.40 E-value=0.19 Score=50.81 Aligned_cols=273 Identities=13% Similarity=0.123 Sum_probs=125.8
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc--C---CCceeEEEEecCCCEEEEEeCCCeEEEEEC
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG--H---SKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--h---~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
-...+..|.|... .+-+++|. .+. |+...+.++.-..... . .-...+|.|..+ ..+++ +..+ +.+...
T Consensus 15 t~~~l~dV~F~d~-~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDP-NHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTT 87 (302)
T ss_dssp -SS-EEEEEESSS-S-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEES
T ss_pred CCCceEEEEEecC-CEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEec
Confidence 3457899999855 56666654 454 3444233332222111 1 123567777643 34444 4444 444445
Q ss_pred CCCcEEEEccC----CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce-EEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 373 ETGQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 373 ~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~-~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
+.|+.-..+.. ......+.... + ..+...+..|.|+.= ...|+. ......-.+.+..+..+++|++++++
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~--~--~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs 162 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALG--D--GSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVS 162 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEE--T--TEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEE
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcC--C--CcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEE
Confidence 55544333321 11222222221 1 123333444544332 222322 22234455788999999999988888
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc-CceeecccccccCcccccceEEEE
Q 007757 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
+.-..+.-||-....-... .......|..|.|.|++.+.++ ...|.|++=+.. ....... .........-.+..++
T Consensus 163 ~~G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a 239 (302)
T PF14870_consen 163 SRGNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLA 239 (302)
T ss_dssp TTSSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEE
T ss_pred CcccEEEEecCCCccceEE-ccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcccccc-ccCCcccCceeeEEEE
Confidence 7766666788654322222 2235678999999999876665 488888887722 2222111 1111112223377899
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 527 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
|.+++...++|+. |.| +.....|+.-...+. -...+..+.|.+ . ..-...|.+|.|--|
T Consensus 240 ~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 240 YRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp ESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE-STTEEEEE
T ss_pred ecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcC-C-CceEEECCCcEEEEe
Confidence 9999887776664 433 344556666555543 234578888875 2 355666779988665
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00065 Score=44.09 Aligned_cols=39 Identities=33% Similarity=0.617 Sum_probs=34.3
Q ss_pred CeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 551 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 ~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++++..+..|...|.++.|++ ...++++++.||.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456777888999999999999 568999999999999997
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0091 Score=62.47 Aligned_cols=145 Identities=16% Similarity=0.246 Sum_probs=104.3
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcE----EEEEEcCCcEEEEECCCCce--EEEEc
Q 007757 354 DGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI----LLAGMSDKKIVQWDMNTKEI--TQEYD 426 (590)
Q Consensus 354 dg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----lvsg~~dg~I~vwDl~t~~~--~~~~~ 426 (590)
+.++|+ ++.....|+-.|++.|+++.....+..+..+.+.++.....+ -+.|-++..|.-||+|-... +....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 444444 455557788889999999999988888777777776543322 46688899999999984322 22222
Q ss_pred cc----CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 427 QH----LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 427 ~h----~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
.| .....|++-..+| ++++||.+|.|++||- .+...++..++...+|..|..+.+|++|++.+ +..+.+.++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22 2234566655555 8999999999999996 66666666667888999999999999988765 566666665
No 368
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.27 E-value=0.057 Score=52.92 Aligned_cols=196 Identities=14% Similarity=0.235 Sum_probs=112.6
Q ss_pred ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEccc-CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc---
Q 007757 387 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--- 462 (590)
Q Consensus 387 ~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--- 462 (590)
...+.+.++. ..++++....+.|..++. +|+++..+.-. .+-.-.|++..++.++++.-.++.+.++++....
T Consensus 24 ~SGLTy~pd~--~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDT--GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTT--TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCCC--CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 4556666643 478888888999999997 47788776533 3567889998877666666568999999883211
Q ss_pred ---EEEEee----cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC---ceeecc--ccccc-CcccccceEEEEEcC
Q 007757 463 ---VIKYIS----EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE---RFQLNK--KKRFA-GHIVAGYACQVNFSP 529 (590)
Q Consensus 463 ---~~~~~~----~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~---~~~~~~--~~~~~-~~~~~~~v~~v~~sp 529 (590)
....+. ..+...+-.++|++.++.|+++-...-..+|.+.. ...+.. ...+. .......+..++++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 112222 12445689999999988888887777777777654 111110 00111 111122356788988
Q ss_pred C-CCEEEEEeCCCcEEEEeCCCCeEEEEEecCC---------CCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 530 D-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE---------GVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 530 d-g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~---------~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
. |.+++..+....|..+| .+|+++..+.-.. ...-.|+|.+ ++. |...+.-+...+
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~ 246 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYR 246 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T---EEEEETTTEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCC-EEEEcCCceEEE
Confidence 5 56677777888899999 7888877665332 2467899999 554 444445554444
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.27 E-value=0.023 Score=60.69 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=78.2
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceee
Q 007757 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 507 (590)
..-....+.++|+++.++++ .+|.-.|+......... .+.-..++|.+.+ .+|+-...+.|.|+.--.....
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc------cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 44457899999999988885 46777777743333222 2345678899855 4666666888999732221111
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 508 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
+.+... ..+..+-. |.+|...+.+ .|.+|||.+++.+..+... +|..+.|++ ++.+++..+.+ .|.
T Consensus 103 ---k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~-~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 103 ---KSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD-DGELVALVTKD-SIY 168 (443)
T ss_dssp --------S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T-TSSEEEEE-S--SEE
T ss_pred ---eEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC-CCCEEEEEeCC-eEE
Confidence 111111 11222222 7777777655 8999999999999999854 389999999 67788888765 555
Q ss_pred Ee
Q 007757 588 YW 589 (590)
Q Consensus 588 iW 589 (590)
|+
T Consensus 169 il 170 (443)
T PF04053_consen 169 IL 170 (443)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0015 Score=69.39 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=71.7
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCcee-EEEEecCCCEEEEEeCCCeEEEEECCCCcE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVR-DISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~-~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
...|.-+.|+|. -.++|.+..+|.|.+..+ + .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~-n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRL-N-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEe-c-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 345788899999 899999999999999998 3 778888887888888 999999999999999999999999999988
Q ss_pred EEEc
Q 007757 378 IRTF 381 (590)
Q Consensus 378 ~~~~ 381 (590)
+..+
T Consensus 97 l~~~ 100 (665)
T KOG4640|consen 97 LVSF 100 (665)
T ss_pred eecc
Confidence 8773
No 371
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.007 Score=65.29 Aligned_cols=116 Identities=9% Similarity=0.135 Sum_probs=85.4
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC-CCCce-EEEEecCCCCCcEEEEEEcCCcEEEEECCCC
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~ 419 (590)
|...|.--++...+.+++.|+.-|.+.+|+-..+.....-.. .+... +.++++.. .++++|+..|.|.++-+..+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e---~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE---YLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh---HhhhhhcCCceEEeehhhcc
Confidence 445566666777889999999999999999877766544432 22233 33334332 67888999999999988764
Q ss_pred ce---EE--EE-cccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 007757 420 EI---TQ--EY-DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 420 ~~---~~--~~-~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~ 460 (590)
.. +. .. ..|...|++++|++++..|++|...|.|.+-.+..
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 11 11 23778999999999999999999999999988876
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.19 E-value=0.026 Score=47.42 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=73.3
Q ss_pred eeEEEEcC---CCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 302 VSAIRFFP---KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 302 V~~l~fsp---~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
|++++++. ++.+-|++||.|..|+||+- ...+..+.. ...|++++-... ..|+.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 67777765 33478999999999999974 456666654 455777776655 57999999999999975 4455
Q ss_pred EEccCCCCceEEEE-ecCCCCCcEEEEEEcCCcEE
Q 007757 379 RTFSTGKIPYVVKL-NPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 379 ~~~~~~~~~~~~~~-~~~~~~~~~lvsg~~dg~I~ 412 (590)
...+..+.+.++.+ ..+.+...-|++|-++|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55555555554444 44445556799999998874
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.015 Score=60.97 Aligned_cols=141 Identities=14% Similarity=0.225 Sum_probs=97.0
Q ss_pred cEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCC-------EEEEEeCCCcEEEEECCCCcE-EEEeecC-
Q 007757 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-------RFVTSSDDKSLRVWEFGIPVV-IKYISEP- 470 (590)
Q Consensus 400 ~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~-------~l~s~s~Dg~I~iwdl~~~~~-~~~~~~~- 470 (590)
-++..+.....|+-.|++.|+++.++.-+.. |+-+.+.|+.+ .-+.|-.+..|.-||.+.... .......
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4566677788999999999999999987776 77778877653 234566788899999875433 1111111
Q ss_pred ---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 471 ---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 471 ---~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
......|++-..+ .++++|+.+|.|++||-.. . .-...+++. ...|..|..+.+|++|++.+ +..|.+.+
T Consensus 426 qy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~-~--~AKTAlPgL--G~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIG-R--RAKTALPGL--GDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ccccccccceeeecCC-ceEEEeecCCcEEeehhhh-h--hhhhccccc--CCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 2233455555544 4899999999999999632 2 122334443 56788899999999987765 44666666
Q ss_pred C
Q 007757 548 W 548 (590)
Q Consensus 548 ~ 548 (590)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.21 Score=50.70 Aligned_cols=216 Identities=13% Similarity=0.183 Sum_probs=122.4
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC--
Q 007757 306 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-- 383 (590)
Q Consensus 306 ~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-- 383 (590)
.|.++.+.++.+--..+.|.-|+.. .+ ....+. +...+.++.....+..|+++. .-+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~-~g-~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPE-TG-KKRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCC-cC-ceEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 4777755577777778888888873 23 222232 233345555555555666664 3466667666655333221
Q ss_pred -C---CCceEEEEecCCCCCcEEEEEEcC------------CcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 384 -G---KIPYVVKLNPDDDKQNILLAGMSD------------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 384 -~---~~~~~~~~~~~~~~~~~lvsg~~d------------g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
. ....-..+.+++ . +..+... |.|+.+|. .+..+..+..+...-+.|+|+|+++.|+.+
T Consensus 106 ~~~~~~r~ND~~v~pdG---~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 106 DGLPLNRPNDGVVDPDG---R-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCCcCCCCceeEcCCC---C-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 1 122234444443 2 3333222 34555554 566666666667778999999999887776
Q ss_pred eC-CCcEEEEECCC------CcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC-eEEEEEccCceeecccccccCcccc
Q 007757 448 SD-DKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 448 s~-Dg~I~iwdl~~------~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
.. .+.|.-|++.. ............+..-.++...+|.+.+++..+| .|.+|+.. +..+...... .
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP-----~ 254 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP-----V 254 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC-----C
Confidence 55 47788887752 1111222222445667788888898876555554 89999887 4444333221 1
Q ss_pred cceEEEEE-cCCCCEEEEE
Q 007757 520 GYACQVNF-SPDGRFVMSG 537 (590)
Q Consensus 520 ~~v~~v~~-spdg~~l~sg 537 (590)
..+.+++| .|+.+.|++.
T Consensus 255 ~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CCCccceEeCCCcCEEEEE
Confidence 33445666 3444554433
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.16 E-value=0.0064 Score=68.41 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=85.2
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC-------CCEEEEEEcCCeEEEEEccCce-eecccccccCcccc
Q 007757 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-------TNWLAAQSLDNQILIYSTRERF-QLNKKKRFAGHIVA 519 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~-------g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~ 519 (590)
.....|+-.|+..++.+..+......+|.. +.|+ ..-.++|-.++.+..||.|-.. .+. ..........
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-~~~~k~Y~~~ 577 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-DSQSKQYSSK 577 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCcee-eccccccccC
Confidence 356789999999999999887654444444 4443 2345667788999999988542 111 1111111123
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEE
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
....|++-+.+| +||+|+.+|.|++||--..+....|.+-..+|++|..+.++..+|+||
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence 345567777676 899999999999999433333344556678999999999555455555
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.001 Score=62.47 Aligned_cols=143 Identities=14% Similarity=0.163 Sum_probs=89.4
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEe
Q 007757 314 LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLN 393 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~ 393 (590)
+|..-+.||.|.-+++..-....+.-.-|...-..+. -+..+++|+.+|.|.+|...-..............+.+..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 4445566777777776322222222222222211222 3457899999999999988732222222223333445556
Q ss_pred cCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccC-CceeEEEEeCCCCEEEEE--eCCCcEEEEECC
Q 007757 394 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVDSNRRFVTS--SDDKSLRVWEFG 459 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~-~~V~~i~~~p~~~~l~s~--s~Dg~I~iwdl~ 459 (590)
|......+..+++.+|.|+.|++.-++.+.....|. .++.....+..++.+.++ |.|..++.|++.
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 666666799999999999999999888777777777 555555555556666666 666667777664
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.14 E-value=0.34 Score=51.62 Aligned_cols=230 Identities=11% Similarity=0.092 Sum_probs=116.4
Q ss_pred eeEEEEecCCCEEEEE-eCCC----eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC----------Cc
Q 007757 346 VRDISFCNDGTKFLTA-SYDK----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD----------KK 410 (590)
Q Consensus 346 V~~l~fspdg~~l~s~-s~Dg----~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d----------g~ 410 (590)
+..+.++|+|++|+.+ +..| .|+++|+.+++.+...-.......+.|..++. .++.+...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~--~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGK--GFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSS--EEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCC--EEEEEEeCcccccccCCCCcE
Confidence 4467899999988855 3334 59999999998765432222222366665432 455554333 24
Q ss_pred EEEEECCCCce--EEEEcccCCc--eeEEEEeCCCCEEEEEeCC----CcEEEEECCCC----cEEEEeecCCCCcccEE
Q 007757 411 IVQWDMNTKEI--TQEYDQHLGA--VNTITFVDSNRRFVTSSDD----KSLRVWEFGIP----VVIKYISEPHMHSMPSI 478 (590)
Q Consensus 411 I~vwDl~t~~~--~~~~~~h~~~--V~~i~~~p~~~~l~s~s~D----g~I~iwdl~~~----~~~~~~~~~~~~~i~~i 478 (590)
|+.|.+.+... ...+...... ...+..++++++|+..+.. ..+++.++... .....+..........+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 78888887642 2344433332 5678889999987754332 34788888764 23333333222222333
Q ss_pred EEcCCCCEEEEEEc---CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCe
Q 007757 479 SLHPNTNWLAAQSL---DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEG--KCWFWDWKSCK 552 (590)
Q Consensus 479 ~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~-sgs~dg--~I~iwd~~t~~ 552 (590)
... .+.+++.... .+.|...++...........+..+.....+..+.. .+.+|+ ....++ .|+++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 333 4434443322 35677777766442111112222221223433433 344444 444443 58899988444
Q ss_pred EEEEEec-CCCCEEEEEEcCCCCCEEEEE
Q 007757 553 VFRTLKC-HEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 553 ~~~~l~~-h~~~V~~v~~sp~~~~~l~s~ 580 (590)
....+.. -.+.|..+...+....+.++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 4444443 334456665555444444433
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0034 Score=70.55 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=74.9
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
...+.+.+.- +-.++.|+..|.|...|+..+-.....-..-.++|++++|+.+|++++.|-.+|.|.+||+..++.+
T Consensus 89 ~~~v~s~a~~---~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 89 AAGVISSAIV---VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred Ccceeeeeee---eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 3444444432 5678899999999998883221221222234678999999999999999999999999999999988
Q ss_pred EEccCCCCce--EEEEecCCCCCcEEEEEEcCCcEE
Q 007757 379 RTFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 379 ~~~~~~~~~~--~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
+.+..+..+. ++.....+ +...++++...|.++
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGSFW 200 (1206)
T ss_pred eeeeecCCccceEEEEEEeC-CCcEEEEccCCCceE
Confidence 8876544332 22222322 234688887777643
No 379
>PHA02713 hypothetical protein; Provisional
Probab=96.91 E-value=0.15 Score=56.57 Aligned_cols=199 Identities=9% Similarity=0.010 Sum_probs=97.4
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC-----cEEEEECCCCceE
Q 007757 354 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEIT 422 (590)
Q Consensus 354 dg~~l~s~s~D------g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~vwDl~t~~~~ 422 (590)
++..++.|+.+ ..+..||..++.....-.............. ++.+.+.|+.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 66777777754 3477888877754322211111111111111 236777787654 4788998876432
Q ss_pred E--EEcccCCceeEEEEeCCCCEEEEEeCCC-----------------------cEEEEECCCCcEEEEeecCCCCcccE
Q 007757 423 Q--EYDQHLGAVNTITFVDSNRRFVTSSDDK-----------------------SLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 423 ~--~~~~h~~~V~~i~~~p~~~~l~s~s~Dg-----------------------~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
. .+.........+. -++...+.|+.++ .+..||..+..-...-..+....-.+
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 2 1111111111222 2577777777543 46677776654322211111111122
Q ss_pred EEEcCCCCEEEEEEcC------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC--cEEEEeCC
Q 007757 478 ISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWK 549 (590)
Q Consensus 478 i~~sp~g~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg--~I~iwd~~ 549 (590)
++. -++++.++|+.+ ..+..||..+.........+..... ....+.+ +|++.++|+.+| .+-.||..
T Consensus 459 ~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 459 VVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 222 246666666654 2467788775111222222222211 1111222 778888998888 67777777
Q ss_pred CCeEEEEEecCC
Q 007757 550 SCKVFRTLKCHE 561 (590)
Q Consensus 550 t~~~~~~l~~h~ 561 (590)
+.+-......|.
T Consensus 534 ~~~W~~~~~~~~ 545 (557)
T PHA02713 534 TYEWNHICHQHS 545 (557)
T ss_pred cccccchhhhcC
Confidence 655443333444
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.90 E-value=0.51 Score=47.08 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=112.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE--------
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-------- 425 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-------- 425 (590)
.++.|+.|+.+| |.++++........+.....+.-+...+.- +.+++- .|+.|+++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~---~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPEL---NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEeccc---CEEEEE-cCCccEEEEchhhcccccccccccccc
Confidence 578899999888 899998333222222222224445555433 233333 4599999999765433311
Q ss_pred ------cccCCceeEEE--EeCCCCEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 426 ------DQHLGAVNTIT--FVDSNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 426 ------~~h~~~V~~i~--~~p~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
......+..++ -...+...++....+.|.+|.+... ...+.+. ....+..++|. ++.|+++..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEEEEeC
Confidence 11222344444 1133444455555568999887653 3445553 34678888888 566777764
Q ss_pred CCeEEEEEccCceeecccccccCc--------ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEecCCC
Q 007757 493 DNQILIYSTRERFQLNKKKRFAGH--------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLKCHEG 562 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~--~l~~h~~ 562 (590)
+ ...+.|+.+....... ..... .....+..+.. +++.+|++.+ ..-.+.|. .|++.+ .+.= ..
T Consensus 157 ~-~f~~idl~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~--~~g~fv~~-~G~~~r~~~i~W-~~ 229 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELL-DPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD--NIGVFVNK-NGEPSRKSTIQW-SS 229 (275)
T ss_pred C-ceEEEecCCCCceEEe-CccCCcchhhhcccCCCceEEEEe-CCceEEEEec--ceEEEEcC-CCCcCcccEEEc-CC
Confidence 4 4778888754332111 11110 01112322333 3456666543 23333443 443332 2222 23
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 563 VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+.++++.. .+|+..+.+ .|-||+
T Consensus 230 ~p~~~~~~~---pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 230 APQSVAYSS---PYLIAFSSN-SIEVRS 253 (275)
T ss_pred chhEEEEEC---CEEEEECCC-EEEEEE
Confidence 455666643 367766654 488774
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.88 E-value=0.075 Score=44.68 Aligned_cols=100 Identities=12% Similarity=0.219 Sum_probs=69.4
Q ss_pred eeEEEEec-CC---CEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce
Q 007757 346 VRDISFCN-DG---TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421 (590)
Q Consensus 346 V~~l~fsp-dg---~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~ 421 (590)
|++|++.. ++ +.|++||.|..|++|+-+ ..+..+.....+..++-... ..|+.+..+|+|-+|+-. ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~----~~F~Y~l~NGTVGvY~~~--~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG----GRFAYALANGTVGVYDRS--QR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC----CEEEEEecCCEEEEEeCc--ce
Confidence 66777665 22 589999999999999754 66777766666655555443 459999999999999763 33
Q ss_pred EEEEcccCCceeEEEEeCCC----CEEEEEeCCCcEE
Q 007757 422 TQEYDQHLGAVNTITFVDSN----RRFVTSSDDKSLR 454 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~----~~l~s~s~Dg~I~ 454 (590)
+...+. ...++++.+.+-+ ..|++|-.+|.|-
T Consensus 74 lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444443 3346777666433 2688888888764
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.84 E-value=0.76 Score=52.13 Aligned_cols=276 Identities=13% Similarity=0.124 Sum_probs=151.8
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccC-CCeeEEE--eccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRT--YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~--~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
|.-..|--+ .++|+++..||.+.-+.+.. ++..-.. ..--..++.--.|+..++.-+.|..|+-..+|.-+..-+.
T Consensus 586 Il~~~~e~d-~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 586 ILLTTFEGD-IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred eeeEEeecc-ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 344445444 78999999999998776632 2221111 1123456666677775555455555666667765433333
Q ss_pred EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc--eEEEEcccCCceeEEEEeCCCCEEEEEeCC------
Q 007757 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDD------ 450 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~--~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D------ 450 (590)
..+........+.++.+.-. . .++....+.+.+.-+..-+ .++++. -......|++.+....+.+.+..
T Consensus 665 spls~kev~~~c~f~s~a~~-d-~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYP-D-SLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred eccchHHhhhhcccccccCC-c-eEEEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchh
Confidence 33333333334444433322 2 2333344566666554321 222332 23445667777644444443321
Q ss_pred --------CcEEEEECCCCcEEEEeecCC---CCcccEEEEcCC-CCEEEEEEc----------CCeEEEEEccCceeec
Q 007757 451 --------KSLRVWEFGIPVVIKYISEPH---MHSMPSISLHPN-TNWLAAQSL----------DNQILIYSTRERFQLN 508 (590)
Q Consensus 451 --------g~I~iwdl~~~~~~~~~~~~~---~~~i~~i~~sp~-g~~l~s~s~----------dg~I~iwd~~~~~~~~ 508 (590)
..++++|-++...+....... ..++.++.|..+ +.++++|.. .|.|.+|.......+
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L- 820 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL- 820 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-
Confidence 136666655554443332211 223555567777 677877762 488888887663222
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
.....+...+.+.++.. -+|++||.- +..|++|+|.+.+.++.-..|..++..+...- .+..++.|..=++|.+
T Consensus 821 --~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 821 --ELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITL 894 (1096)
T ss_pred --eeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEE
Confidence 33333444444443332 156666544 55899999999987777667777788777776 6677887776555543
No 383
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.76 E-value=0.43 Score=54.53 Aligned_cols=237 Identities=13% Similarity=0.165 Sum_probs=119.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCc--------eeEEEEec----------------CCCEEEEEeCCCeE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA--------VRDISFCN----------------DGTKFLTASYDKNI 367 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~--------V~~l~fsp----------------dg~~l~s~s~Dg~I 367 (590)
+..|+.++.++.|.-.|. .+++.+..+...... .+.+++.. .+..++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa-~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDA-ATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 456777777788887787 567776665432210 12233321 34478889999999
Q ss_pred EEEECCCCcEEEEccCCCCce-------------EEEEecCCCCCcEEEEEEc----------CCcEEEEECCCCceEEE
Q 007757 368 KYWDTETGQVIRTFSTGKIPY-------------VVKLNPDDDKQNILLAGMS----------DKKIVQWDMNTKEITQE 424 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~lvsg~~----------dg~I~vwDl~t~~~~~~ 424 (590)
.-.|.++|+.+..|....... .....|-- ....+++|+. +|.|+-+|.++|+++..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999999998775432210 00111100 1135666643 68899999999999988
Q ss_pred EcccCCceeEEEEeCCCCEEEEEeCCC-cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 425 YDQHLGAVNTITFVDSNRRFVTSSDDK-SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 425 ~~~h~~~V~~i~~~p~~~~l~s~s~Dg-~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
+..-....+.. .+.+.....++... ...-+|.+.+... +......+ .+....+........+.|.-.|..+
T Consensus 352 ~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy--~ptGn~~p----d~~g~~r~~~~n~y~~slvALD~~T 423 (764)
T TIGR03074 352 WDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVY--LPMGNQTP----DQWGGDRTPADEKYSSSLVALDATT 423 (764)
T ss_pred EecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeEE--EeCCCccc----cccCCccccCcccccceEEEEeCCC
Confidence 75311111110 11233222222111 2223333332221 11111000 0000000000011133455555555
Q ss_pred ceeecccccccCc----ccccceEEEEEcC-CCC---EEEEEeCCCcEEEEeCCCCeEEEEEe
Q 007757 504 RFQLNKKKRFAGH----IVAGYACQVNFSP-DGR---FVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 504 ~~~~~~~~~~~~~----~~~~~v~~v~~sp-dg~---~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
++..-..+..... .......-+.+.. +|+ .|+.++.+|.++++|.++|+++...+
T Consensus 424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 5443322221100 0001111133433 563 78999999999999999999887654
No 384
>PHA02713 hypothetical protein; Provisional
Probab=96.75 E-value=0.11 Score=57.69 Aligned_cols=181 Identities=9% Similarity=0.066 Sum_probs=89.1
Q ss_pred cEEEEEEcC------CcEEEEECCCCceEEEEcccCCc-eeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEe
Q 007757 400 NILLAGMSD------KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYI 467 (590)
Q Consensus 400 ~~lvsg~~d------g~I~vwDl~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~~~~~~~ 467 (590)
.++++|+.+ ..+..||+.+..-...-.-.... -.+++. -+++..+.|+.++ ++..||..+..-...-
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 577777753 34778898876432111111111 112222 2577778887654 4788998765433211
Q ss_pred ecCCCCcccEEEEcCCCCEEEEEEcC-----------------------CeEEEEEccCceeecccccccCcccccceEE
Q 007757 468 SEPHMHSMPSISLHPNTNWLAAQSLD-----------------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 468 ~~~~~~~i~~i~~sp~g~~l~s~s~d-----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
..+....-.+++ .-++.+.+.|+.+ ..+..||..+.. ......+.... .....
T Consensus 384 ~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~~~r--~~~~~ 459 (557)
T PHA02713 384 DMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFWTGT--IRPGV 459 (557)
T ss_pred CCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCCccc--ccCcE
Confidence 111111111222 2256777777654 246778876532 11111111111 11111
Q ss_pred EEEcCCCCEEEEEeCC------CcEEEEeCCC---CeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEeC
Q 007757 525 VNFSPDGRFVMSGDGE------GKCWFWDWKS---CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG--LIKYWD 590 (590)
Q Consensus 525 v~~spdg~~l~sgs~d------g~I~iwd~~t---~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG--~I~iWD 590 (590)
+ .-+|++.+.|+.+ ..+..||..+ +..+..+.........+++ ++.+.++||.|| ++-.||
T Consensus 460 ~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 460 V--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred E--EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcC
Confidence 2 2256666667643 2467888776 3444444433333333333 567889999888 444443
No 385
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.72 E-value=0.071 Score=56.71 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=106.2
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCC---CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe-CCCe--EEEE
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN--IKYW 370 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~--I~vW 370 (590)
.-...+..-+|+|++..+....-.. ..+.++++ ..+.....+. ..+.-..-+|+|||++|+.+. .||. |.+.
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l-~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDL-NTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEec-cCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 3344566677888843333332222 45888998 4443333222 233344578999998877554 4554 6666
Q ss_pred ECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCc--EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 371 DTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 371 d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~--I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
|+.++...+ +... .....-.++|++ ..++++.+..|. |.++++..+.. ..+....+.-..-.|+|+|++|+..
T Consensus 268 dl~~~~~~~-Lt~~~gi~~~Ps~spdG--~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 268 DLDGKNLPR-LTNGFGINTSPSWSPDG--SKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred cCCCCccee-cccCCccccCccCCCCC--CEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEE
Confidence 777776444 3332 222234445544 466666666665 55566666554 3333333333377899999999887
Q ss_pred eCC-Cc--EEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 448 SDD-KS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 448 s~D-g~--I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
+.. |. |.+.|+.....++.+. .......-.|.+++..+...+.
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEecc
Confidence 743 43 6666665554333332 3333445567777776665543
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.72 E-value=0.68 Score=45.41 Aligned_cols=197 Identities=13% Similarity=0.137 Sum_probs=115.7
Q ss_pred eEEEecc-CCCceeEEEEecCCCEEEEEeCCC--eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcE
Q 007757 335 CMRTYMG-HSKAVRDISFCNDGTKFLTASYDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 335 ~~~~~~~-h~~~V~~l~fspdg~~l~s~s~Dg--~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 411 (590)
.+.++.. ...-...+.|..+|.++-+.+.-| .|+.+|+.+++.+...........-.+...++ .++...-.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeE
Confidence 4444432 233455788877888888887765 79999999999888776655443322222222 566667778999
Q ss_pred EEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC-CCC---cccEEEEcCCCCEE
Q 007757 412 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP-HMH---SMPSISLHPNTNWL 487 (590)
Q Consensus 412 ~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~-~~~---~i~~i~~sp~g~~l 487 (590)
.+||..+.+.+.++.- .+.-..++ .++..|+.+.....|+++|..+....+.+.-. ... .+.-+.+. +|...
T Consensus 113 f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999988888753 35556676 35677777777788999998877666665432 112 23445554 45555
Q ss_pred EEEEcCCeEEEEEccCceeeccccc----------ccCcccccceEEEEEcCCCCE-EEEE
Q 007757 488 AAQSLDNQILIYSTRERFQLNKKKR----------FAGHIVAGYACQVNFSPDGRF-VMSG 537 (590)
Q Consensus 488 ~s~s~dg~I~iwd~~~~~~~~~~~~----------~~~~~~~~~v~~v~~spdg~~-l~sg 537 (590)
|-.=....|...|..++........ ...+......+.|++.|.... +++|
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5444556677777766554322110 001111345678999886555 4555
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.60 E-value=1.1 Score=46.97 Aligned_cols=194 Identities=16% Similarity=0.225 Sum_probs=94.4
Q ss_pred CCCEEEEEe-CCCeEEEEECCCC----cEEEEccCC--------CCceEEEEecCCCCCcEEEEEEc------CCcEEEE
Q 007757 354 DGTKFLTAS-YDKNIKYWDTETG----QVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGMS------DKKIVQW 414 (590)
Q Consensus 354 dg~~l~s~s-~Dg~I~vWd~~t~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~~------dg~I~vw 414 (590)
..++|+..+ ..+.|.|.|+.+. ++.+.+... ..+..+.+.++ +.+++++.. -|.+.++
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~---G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD---GRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS-----EEEEEEEETTS-S--EEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC---ccEEEEeccCCCCCCCCcEEEE
Confidence 345777666 6789999999743 444444320 11223333332 356776543 3678899
Q ss_pred ECCCCceEEEEcccCC---ceeEEEEeCCCCEEEEEeC--------------------CCcEEEEECCCCcEEEEeecCC
Q 007757 415 DMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSSD--------------------DKSLRVWEFGIPVVIKYISEPH 471 (590)
Q Consensus 415 Dl~t~~~~~~~~~h~~---~V~~i~~~p~~~~l~s~s~--------------------Dg~I~iwdl~~~~~~~~~~~~~ 471 (590)
|-++.++........+ --..+-|.|..+.++|+.. ..+|.+||+...+.++.+..+.
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 9988887777654332 3466788898888888752 4589999999999999997765
Q ss_pred CCc-ccEEEEcC--CCCEE-EEEEcCCeEEEEEc-cCce-eecccccccC-----c----------ccccceEEEEEcCC
Q 007757 472 MHS-MPSISLHP--NTNWL-AAQSLDNQILIYST-RERF-QLNKKKRFAG-----H----------IVAGYACQVNFSPD 530 (590)
Q Consensus 472 ~~~-i~~i~~sp--~g~~l-~s~s~dg~I~iwd~-~~~~-~~~~~~~~~~-----~----------~~~~~v~~v~~spd 530 (590)
.+. ..-|.|.. +..+= +.+.....|..|-- ..+. .......+.. - .....++.|.+|.|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 543 33566654 44443 33334455555433 2211 1111111110 0 01345788999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCC
Q 007757 531 GRFVMSGD-GEGKCWFWDWKS 550 (590)
Q Consensus 531 g~~l~sgs-~dg~I~iwd~~t 550 (590)
.++|...+ ..|.|+.||+..
T Consensus 323 DrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SS
T ss_pred CCEEEEEcccCCcEEEEecCC
Confidence 99998766 689999999975
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.58 E-value=0.22 Score=55.35 Aligned_cols=189 Identities=8% Similarity=0.057 Sum_probs=102.3
Q ss_pred cCCCceeEEEEecCCCEEEEEe------CCC--eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEE-------
Q 007757 341 GHSKAVRDISFCNDGTKFLTAS------YDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG------- 405 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s------~Dg--~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg------- 405 (590)
+....+.+.+++|+|+.++... .|. .|.+++.. +.. ..+..+.....-.|++++. .+.+.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCC---ceEEEecCcceE
Confidence 3445688999999999887665 243 45555542 222 3333333344556666532 12221
Q ss_pred -----EcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEE---EECCCCc-EE---EEeecCCCC
Q 007757 406 -----MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV---WEFGIPV-VI---KYISEPHMH 473 (590)
Q Consensus 406 -----~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i---wdl~~~~-~~---~~~~~~~~~ 473 (590)
...+.+++.++..++... ...+.|..+.|+|+|.+++... ++.|++ -....+. .+ ..+......
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 123456666666655433 3356799999999999988776 477776 3322332 11 112222333
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEE--ccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007757 474 SMPSISLHPNTNWLAAQSLDNQILIYS--TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 545 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg~I~iwd--~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~i 545 (590)
.+..+.|..++.++ ++..++...+|. +...... .+.+......+..|+-++. -|+..+.+|.+.+
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~----~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD----ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEecCCcccc----ccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 46789999988855 555555444454 4322111 1122212334555665552 4556666764444
No 389
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.011 Score=63.14 Aligned_cols=94 Identities=6% Similarity=0.004 Sum_probs=76.1
Q ss_pred CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCcee-EEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 007757 385 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN-TITFVDSNRRFVTSSDDKSLRVWEFGIPVV 463 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~-~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~ 463 (590)
.....+.|+|.- .+++.+..+|.|.+..+. .+.+.++.-|...++ +++|.|+|+.|++|-.||+|++.|..++..
T Consensus 21 ~~i~~~ewnP~~---dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKM---DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCcc---chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 334456666644 589999999999999988 777888887777777 999999999999999999999999999888
Q ss_pred EEEeecCCCCcccEEEEcC
Q 007757 464 IKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 464 ~~~~~~~~~~~i~~i~~sp 482 (590)
+..........|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7774444556788888864
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.33 E-value=0.66 Score=48.51 Aligned_cols=155 Identities=14% Similarity=0.212 Sum_probs=82.1
Q ss_pred EcCCCCCEEEEEeC------CCcEEEEEccCCCeeEEEeccC---CCceeEEEEecCCCEEEEEeC--------------
Q 007757 307 FFPKYGHLILSAGM------DTKVKIWDVVNSGKCMRTYMGH---SKAVRDISFCNDGTKFLTASY-------------- 363 (590)
Q Consensus 307 fsp~~g~~L~sgs~------Dg~I~iWd~~~~~~~~~~~~~h---~~~V~~l~fspdg~~l~s~s~-------------- 363 (590)
.-|+ |.+++|+-. -|-+.+.|- ++.......... ..--.++.|.|..+.++|+..
T Consensus 137 clp~-G~imIS~lGd~~G~g~Ggf~llD~-~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 137 CLPD-GRIMISALGDADGNGPGGFVLLDG-ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp E-SS---EEEEEEEETTS-S--EEEEE-T-TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred ecCC-ccEEEEeccCCCCCCCCcEEEEcC-ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 3456 778877522 244666665 345555554432 234567888888888888753
Q ss_pred ------CCeEEEEECCCCcEEEEccCCC---CceEEEEecCCCCCcEEEEEEcCCcEEEEEC-CCCc----eEEEEccc-
Q 007757 364 ------DKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM-NTKE----ITQEYDQH- 428 (590)
Q Consensus 364 ------Dg~I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl-~t~~----~~~~~~~h- 428 (590)
..++.+||+.+.+.++++..+. .+.-+.|..++....-|+.+.-..+|..|-- ..++ .+..+...
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 4589999999999999998874 3456778777766666666666777776654 3332 22222111
Q ss_pred ----------------CCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCcE
Q 007757 429 ----------------LGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVV 463 (590)
Q Consensus 429 ----------------~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~~ 463 (590)
..-|+.|.++.|.++|..++ ..|.|+.||+..+..
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 24579999999999886554 589999999976543
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.32 E-value=0.18 Score=56.07 Aligned_cols=175 Identities=18% Similarity=0.147 Sum_probs=93.0
Q ss_pred CCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEe------CCC--cEEEEECCCCcEEEEeecCCCCcccEEE
Q 007757 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS------DDK--SLRVWEFGIPVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 408 dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s------~Dg--~I~iwdl~~~~~~~~~~~~~~~~i~~i~ 479 (590)
+|.+...+-..-..+.-..+....+.+..++|+|+.++... .|. .|.+++..... ..+... .....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCce
Confidence 66665544332222222223334678899999999887665 233 45555653322 333222 2478889
Q ss_pred EcCCCCEEEEEEcCCe-EEEEEccCceeecccccccCc---ccccceEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCe
Q 007757 480 LHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWF---WDWKSCK 552 (590)
Q Consensus 480 ~sp~g~~l~s~s~dg~-I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~v~~spdg~~l~sgs~dg~I~i---wd~~t~~ 552 (590)
|+|+|..|++.+..+. +++.+......+.....-.+. ...+.|..+.|||||..|+... +|.|++ -....|.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999988887754322 222221111111100000000 1134588899999999988765 478877 4444454
Q ss_pred E-E---EEEe-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 553 V-F---RTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 553 ~-~---~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
. + ..+. .-...+.++.|.. ++.+ +.+..++...+|
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~ 522 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRT-GDSL-VVGRSDPEHPVW 522 (591)
T ss_pred eeecccEEeecccCCccccceEec-CCEE-EEEecCCCCceE
Confidence 1 1 1122 2233468899998 5554 455544444444
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.32 E-value=0.42 Score=53.03 Aligned_cols=227 Identities=13% Similarity=0.126 Sum_probs=113.1
Q ss_pred CCEEEEEeCCC------cEEEEEccCCCee--EEEeccCCCceeEEEEecCCCEEEEEeCC------CeEEEEECCCCcE
Q 007757 312 GHLILSAGMDT------KVKIWDVVNSGKC--MRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIKYWDTETGQV 377 (590)
Q Consensus 312 g~~L~sgs~Dg------~I~iWd~~~~~~~--~~~~~~h~~~V~~l~fspdg~~l~s~s~D------g~I~vWd~~t~~~ 377 (590)
+.+++.||.++ .+..+|.. .+.. +..+. +...-.++++. ++...++|+.| .++-.||..+++-
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~-~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPK-TNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCC-cCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 66777777774 57777773 3321 11122 22223344444 46788889988 3577888887774
Q ss_pred EEEccCCCCceEEEEecCCCCCcEEEEEEcCCc-----EEEEECCCCceEEEEcccCCceeEE-EEeCCCCEEEEEeCCC
Q 007757 378 IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK-----IVQWDMNTKEITQEYDQHLGAVNTI-TFVDSNRRFVTSSDDK 451 (590)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~-----I~vwDl~t~~~~~~~~~h~~~V~~i-~~~p~~~~l~s~s~Dg 451 (590)
...-.....-........ .+.+.++|+.||. |-.||..+.+-...-.-.. ...+. ...-++...++|+.++
T Consensus 362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCC
Confidence 442222222222222221 2368888888864 6778877664222111111 11111 1122577788887554
Q ss_pred ------cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe-----EEEEEccCceeecccccccCccccc
Q 007757 452 ------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-----ILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 452 ------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
++..||..+..-...-.......-..++. -++.+.++|+.|+. |..||..+..=. ............
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWT-MVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCcee-EcccCccccccc
Confidence 46677776654332221111111122222 25677777777753 667877653211 111111111111
Q ss_pred ceEEEEEcCCCCEEEEEeCCCc-----EEEEeCCC
Q 007757 521 YACQVNFSPDGRFVMSGDGEGK-----CWFWDWKS 550 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~-----I~iwd~~t 550 (590)
.+ + .-++...++|+.+|. |..||..+
T Consensus 517 g~--~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 517 GV--V--VLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cE--E--EECCEEEEEecccCccccceeEEcCCCC
Confidence 11 1 125666777776653 55666544
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.016 Score=65.46 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=76.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccc
Q 007757 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
.+..++.|++.|.+...|+...-..........++|++++|+.+|..++.|-.+|.|.+||+..+..+..+... ++. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap-~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAP-V 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCc-c
Confidence 45678899999999999987642222233346789999999999999999999999999999886665444333 332 2
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
..+..+.+..++..+++++..|. +|.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 34555667777778889988886 554
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.11 E-value=0.19 Score=55.72 Aligned_cols=215 Identities=11% Similarity=0.088 Sum_probs=110.9
Q ss_pred CCEEEEEeCC------CeEEEEECCCCcEEEEccCC--CCceEEEEecCCCCCcEEEEEEcC------CcEEEEECCCCc
Q 007757 355 GTKFLTASYD------KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKE 420 (590)
Q Consensus 355 g~~l~s~s~D------g~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~d------g~I~vwDl~t~~ 420 (590)
+.+++.|+.+ ..+..+|..++......... .....++... +.++++|+.+ ..+..||.++++
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~----~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN----GKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC----CEEEEEccccCCCcccceEEEecCCCCc
Confidence 4455566555 46778888877554433322 2222333322 2688889888 357788888776
Q ss_pred eEEE--EcccCCceeEEEEeCCCCEEEEEeCCCc-----EEEEECCCCcEEEEeecCCCCcccEE-EEcCCCCEEEEEEc
Q 007757 421 ITQE--YDQHLGAVNTITFVDSNRRFVTSSDDKS-----LRVWEFGIPVVIKYISEPHMHSMPSI-SLHPNTNWLAAQSL 492 (590)
Q Consensus 421 ~~~~--~~~h~~~V~~i~~~p~~~~l~s~s~Dg~-----I~iwdl~~~~~~~~~~~~~~~~i~~i-~~sp~g~~l~s~s~ 492 (590)
-... +....... +++. -+|...++|+.||. |-.||..+.+-...-. ......+. ...-+|...++|+.
T Consensus 361 W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred eeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCc
Confidence 3321 11111111 1121 25778889998864 6667765543322211 11111111 12236777777775
Q ss_pred C------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCe--EEEEEec
Q 007757 493 D------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-----CWFWDWKSCK--VFRTLKC 559 (590)
Q Consensus 493 d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~-----I~iwd~~t~~--~~~~l~~ 559 (590)
+ ..+..||..+..= .......... .... + -.-++.+.+.|+.++. |..||..+.+ .+..+..
T Consensus 437 ~~~~~~l~sve~YDP~t~~W-~~~~~M~~~R--~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTW-TLIAPMNTRR--SGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CCCccccceEEEEcCCCCce-eecCCccccc--ccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 5 3467788765421 1111111110 1111 1 1225777778887763 6778876644 3333333
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCc
Q 007757 560 HEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 560 h~~~V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
....+..+.+ ++.+.+.||.||.
T Consensus 512 ~rs~~g~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 512 PRSAVGVVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred ccccccEEEE---CCEEEEEecccCc
Confidence 3333333444 5678888998875
No 395
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.07 E-value=0.00097 Score=73.28 Aligned_cols=199 Identities=16% Similarity=0.188 Sum_probs=103.9
Q ss_pred CCCcEEEEEccCCCeeEEEeccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECC--CCcEEEE----c--cCCCCceEE
Q 007757 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE--TGQVIRT----F--STGKIPYVV 390 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~--t~~~~~~----~--~~~~~~~~~ 390 (590)
..+-|++-+.......-..+++..+.|-++.|.. +...++ -.-|.+.||++. .|+.... . ..+..+..+
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 4456777665322221123456778888888854 222222 223778899875 3332211 1 124445566
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~ 470 (590)
.|++.-.+..++..+..++.|++..+.+... ..+.+|...++.++|...|-..+.+
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~----------------------- 242 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS----------------------- 242 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-----------------------
Confidence 7776655556788888889998887765432 2334577777666654433111111
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc--CceeecccccccCcccccceEEEEEcCC-------C--CEEEEEe-
Q 007757 471 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTR--ERFQLNKKKRFAGHIVAGYACQVNFSPD-------G--RFVMSGD- 538 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~v~~v~~spd-------g--~~l~sgs- 538 (590)
++|||..|+..+.||.+++|.+. ..........++.|.....+|.+ |..+ + .++++++
T Consensus 243 ---------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 243 ---------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred ---------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEeccc
Confidence 45666666666666666555432 11111112222233222334433 2221 1 2344444
Q ss_pred CCCcEEEEeCCCCeEE
Q 007757 539 GEGKCWFWDWKSCKVF 554 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~ 554 (590)
.+..+++|....++|+
T Consensus 313 ~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCcceeEeeccchhhh
Confidence 4556899988777766
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.37 Score=47.51 Aligned_cols=161 Identities=8% Similarity=0.048 Sum_probs=109.2
Q ss_pred ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee
Q 007757 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 506 (590)
+-...+.+++|+|+.+.|++......-.||=-..+..+..+....-+....|.+..++.++++--.++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44455999999999999999888887777776778888888766666777899998999888888889998887754422
Q ss_pred eccccc----ccCccc-ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-E--EEEEecCC-------CCEEEEEEcC
Q 007757 507 LNKKKR----FAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-V--FRTLKCHE-------GVCIGCEWHP 571 (590)
Q Consensus 507 ~~~~~~----~~~~~~-~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~-~--~~~l~~h~-------~~V~~v~~sp 571 (590)
...... +..... ....-.++|+|..+.|+.+-.-.=+.||.+.... . +.....+. ..|.++.|++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 211111 111111 2334569999999988888877777777665332 1 11111111 2467788888
Q ss_pred CCCCEEEEEeCCCcEE
Q 007757 572 LEQSKVATCGWDGLIK 587 (590)
Q Consensus 572 ~~~~~l~s~g~DG~I~ 587 (590)
..+.+|+-+..++.|.
T Consensus 243 ~~~~LLVLS~ESr~l~ 258 (316)
T COG3204 243 ITNSLLVLSDESRRLL 258 (316)
T ss_pred CCCcEEEEecCCceEE
Confidence 7777777766665543
No 397
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.06 E-value=1.8 Score=43.11 Aligned_cols=208 Identities=11% Similarity=0.117 Sum_probs=118.4
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccC------CCeeEEEecc-----CCCceeEEEEecCCC------------EE
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVN------SGKCMRTYMG-----HSKAVRDISFCNDGT------------KF 358 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~------~~~~~~~~~~-----h~~~V~~l~fspdg~------------~l 358 (590)
-..|+|+|. +.+-++....+...+||... ...++-++.. .....+.+.|+.... .|
T Consensus 25 ~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 467899998 78888888889999999841 1223334432 234577888875332 36
Q ss_pred EEEeCCCeEEEEECCCCcE-----EEEccCC--CCc-eEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE--EEccc
Q 007757 359 LTASYDKNIKYWDTETGQV-----IRTFSTG--KIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQH 428 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~-----~~~~~~~--~~~-~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~--~~~~h 428 (590)
+.++.||+|.-|...-+.. ...+... ..+ .-+++........+.++--..++|-+||-.-..... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998532221 1122211 111 234444333333445555567888888754332110 01000
Q ss_pred -----CCceeEEEE------------eCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCCcccEEEEcC------CC
Q 007757 429 -----LGAVNTITF------------VDSNRRFVTSSDDKSLRVWEFGIPVVIKYI-SEPHMHSMPSISLHP------NT 484 (590)
Q Consensus 429 -----~~~V~~i~~------------~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~-~~~~~~~i~~i~~sp------~g 484 (590)
-.+ ..|.- .++.+.=+.+..-|.|-+||+.- ..++++ ........+.|+..| .+
T Consensus 184 ~iPagyAP-FnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 184 ALPAGYAP-FNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCC-cceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 000 01111 11111222233457899999854 444444 444556677888876 46
Q ss_pred CEEEEEEcCCeEEEEEccCceeeccccc
Q 007757 485 NWLAAQSLDNQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 485 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 512 (590)
.+|+----||+|..||..++..+-.+..
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecC
Confidence 7777777899999999887665544443
No 398
>PRK10115 protease 2; Provisional
Probab=96.02 E-value=3.9 Score=46.68 Aligned_cols=243 Identities=10% Similarity=0.113 Sum_probs=115.8
Q ss_pred CCeeEEEEcCCCCCEEEEE-eCCC----cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC------CeEE
Q 007757 300 KGVSAIRFFPKYGHLILSA-GMDT----KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIK 368 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sg-s~Dg----~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D------g~I~ 368 (590)
-.+..+.|+|+ +++|+.+ +.+| .|++-|+ .++..+........ ..++|.+|++.|+.+..+ ..|.
T Consensus 127 ~~l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~-~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPD-NTIMALAEDFLSRRQYGIRFRNL-ETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCC-CCEEEEEecCCCcEEEEEEEEEC-CCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 34777899999 6666654 3333 4778888 35543322211211 469999999877665442 3688
Q ss_pred EEECCCC--cEEEEccCCCCceEEEEecCCCCCcEEEEEEc--CCcEEEEECC--CCceEEEEcccCCceeEEEEeCCCC
Q 007757 369 YWDTETG--QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMN--TKEITQEYDQHLGAVNTITFVDSNR 442 (590)
Q Consensus 369 vWd~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~--dg~I~vwDl~--t~~~~~~~~~h~~~V~~i~~~p~~~ 442 (590)
++++.++ +-...+........+......+...+++.... ++.+.+++.. .+.....+....+....+. +..+.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR 281 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence 8898888 33334443222222222222223233433332 3578888853 3433222322222222222 22333
Q ss_pred EEEEEeCC-C--cEEEEECCCCcEEEEeecC-CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC-ceeecccccccCcc
Q 007757 443 RFVTSSDD-K--SLRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHI 517 (590)
Q Consensus 443 ~l~s~s~D-g--~I~iwdl~~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~ 517 (590)
+++....+ . .|...++........+... ....+..+.+. ...++++...++.-+++-+.. ......+ .+...
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l-~~~~~- 358 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGI-AFDDP- 358 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEe-cCCCC-
Confidence 33333221 2 3444444422222333333 23467777777 334555555566655544332 1111111 11111
Q ss_pred cccceEEEEEc--CCCC-EEEEEe---CCCcEEEEeCCCCe
Q 007757 518 VAGYACQVNFS--PDGR-FVMSGD---GEGKCWFWDWKSCK 552 (590)
Q Consensus 518 ~~~~v~~v~~s--pdg~-~l~sgs---~dg~I~iwd~~t~~ 552 (590)
..+..+.++ +++. ++++.+ .-+.++.+|..+++
T Consensus 359 --~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 --AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred --ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 122223344 4433 444433 34678889987764
No 399
>PHA03098 kelch-like protein; Provisional
Probab=96.01 E-value=0.33 Score=53.72 Aligned_cols=184 Identities=10% Similarity=0.071 Sum_probs=86.4
Q ss_pred CCEEEEEeCCC------cEEEEEccCCCeeEEEeccCC-CceeEEEEecCCCEEEEEeCC-----CeEEEEECCCCcEEE
Q 007757 312 GHLILSAGMDT------KVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQVIR 379 (590)
Q Consensus 312 g~~L~sgs~Dg------~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s~D-----g~I~vWd~~t~~~~~ 379 (590)
+.+++.||.++ .+..||.. +... ..+..-. .........-++..++.||.+ ..+..||..+++...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~-~~~W-~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTK-TKSW-NKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCC-CCee-eECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 56777777643 46677762 3322 2221111 111111122367777888765 357788887765443
Q ss_pred EccC--CCCceEEEEecCCCCCcEEEEEEcC------CcEEEEECCCCceEEEEcccCC-ceeEEEEeCCCCEEEEEeCC
Q 007757 380 TFST--GKIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 380 ~~~~--~~~~~~~~~~~~~~~~~~lvsg~~d------g~I~vwDl~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~D 450 (590)
.-.. .....+... . ++.+++.|+.. ..+..||+.+.+-...-..... .-.++.. -++..++.|+.+
T Consensus 373 ~~~lp~~r~~~~~~~-~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 447 (534)
T PHA03098 373 EPPLIFPRYNPCVVN-V---NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGIS 447 (534)
T ss_pred CCCcCcCCccceEEE-E---CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCcc
Confidence 2221 111122222 1 23567777632 4588899887643221110101 1112222 356666777643
Q ss_pred C--------cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEccC
Q 007757 451 K--------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRE 503 (590)
Q Consensus 451 g--------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-----g~I~iwd~~~ 503 (590)
. .+.+||..+..-...-..+....-.+++. -+++.++.|+.+ +.|.+||..+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 2 37888887654332211111111112222 256666666543 4567777654
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=1.4 Score=43.46 Aligned_cols=163 Identities=9% Similarity=0.167 Sum_probs=106.1
Q ss_pred eccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCC--CceEEEEecCCCCCcEEEEEEcCCcEEEEEC
Q 007757 339 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl 416 (590)
+.+-...|.++.|+|+.+.|++......-.||=...|+.++++.... .+..+.+.-. +.++++--.++.+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~---n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG---NQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC---CEEEEEehhcceEEEEEE
Confidence 34555669999999999999999888888898888999999886543 3334444332 245555566778888776
Q ss_pred CCCceEEEEc---------cc-CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE--EEeecC-------CCCcccE
Q 007757 417 NTKEITQEYD---------QH-LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEP-------HMHSMPS 477 (590)
Q Consensus 417 ~t~~~~~~~~---------~h-~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~--~~~~~~-------~~~~i~~ 477 (590)
.....+.... .+ ....-.++|.|....|+.+-.-.-+.||.+...... ...... ....+.+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 6542222111 12 456678999999999999988888888876532211 011000 1234667
Q ss_pred EEEcCC-CCEEEEEEcCCeEEEEEccCc
Q 007757 478 ISLHPN-TNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 478 i~~sp~-g~~l~s~s~dg~I~iwd~~~~ 504 (590)
+.+++. +.+|+.+..++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 788765 455666666677777776543
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.62 E-value=0.96 Score=44.70 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=86.4
Q ss_pred ceeEEEEeCCCCEEEEEe---CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEE-ccCcee
Q 007757 431 AVNTITFVDSNRRFVTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS-TRERFQ 506 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd-~~~~~~ 506 (590)
.+.+.++++++..++... ....|+++..... ..... ....+..-.|++++...++...+...+++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688899999999877665 3345666654433 22221 233778889999987777766666666663 222211
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEe---CCCcEEEEeCC---CC------eEEEEEecCCCCEEEEEEcCCCC
Q 007757 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWK---SC------KVFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~dg~I~iwd~~---t~------~~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
.......... ...|..+.+||||..++... .++.|++--+. .+ ..+.........+.++.|.+ +.
T Consensus 101 ~~~~v~~~~~--~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~ 177 (253)
T PF10647_consen 101 EPVEVDWPGL--RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DS 177 (253)
T ss_pred eeEEeccccc--CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CC
Confidence 1111111111 12688999999999887655 45777776542 23 11122222345789999999 55
Q ss_pred CEEEEEeCC
Q 007757 575 SKVATCGWD 583 (590)
Q Consensus 575 ~~l~s~g~D 583 (590)
.+++.+...
T Consensus 178 ~L~V~~~~~ 186 (253)
T PF10647_consen 178 TLVVLGRSA 186 (253)
T ss_pred EEEEEeCCC
Confidence 566555443
No 402
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.59 E-value=3.8 Score=43.33 Aligned_cols=87 Identities=13% Similarity=0.155 Sum_probs=56.5
Q ss_pred CcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCC--------------CCEE-EEE
Q 007757 473 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD--------------GRFV-MSG 537 (590)
Q Consensus 473 ~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd--------------g~~l-~sg 537 (590)
..+.+++.+|.+.+.++...=|.|.++|+.....+...+.++.... +++....-... ..+| +-.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc-~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQC-GWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceE-EEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3477899999999888887779999999988766655444443211 11110000000 1123 345
Q ss_pred eCCCcEEEEeCCCCeEEEEEecC
Q 007757 538 DGEGKCWFWDWKSCKVFRTLKCH 560 (590)
Q Consensus 538 s~dg~I~iwd~~t~~~~~~l~~h 560 (590)
-.-|.|-||.+++|..+..+...
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEeC
Confidence 56889999999999988887753
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.49 E-value=2.8 Score=47.74 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=51.2
Q ss_pred CceeEEEEecCCCEEEEEeCCCeEEEEECC---------CCc--EE-EEc---------cCCCCceEEEEecCCCCCcEE
Q 007757 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTE---------TGQ--VI-RTF---------STGKIPYVVKLNPDDDKQNIL 402 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~---------t~~--~~-~~~---------~~~~~~~~~~~~~~~~~~~~l 402 (590)
-.|..|.++++|++|+..|..|.+.+.=.+ .|+ .. +++ .....+..+.|+|.+..+..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 358889999999999998886654442211 111 11 111 112234467788887777889
Q ss_pred EEEEcCCcEEEEECCCC
Q 007757 403 LAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 403 vsg~~dg~I~vwDl~t~ 419 (590)
++-.+|+.|++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999754
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.45 E-value=4.3 Score=43.02 Aligned_cols=145 Identities=12% Similarity=0.130 Sum_probs=88.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCc-----EEEEccCCCCceEEEEecC-CCCCcEEEEEEcCCcEEEEECCC--Cc------
Q 007757 355 GTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGKIPYVVKLNPD-DDKQNILLAGMSDKKIVQWDMNT--KE------ 420 (590)
Q Consensus 355 g~~l~s~s~Dg~I~vWd~~t~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~lvsg~~dg~I~vwDl~t--~~------ 420 (590)
...|++||..|.++|++...+. .+.......++..+.+-.. .......++.-.-.++.+|.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 4589999999999999985433 4444455555554444332 22233455556678888888732 11
Q ss_pred -eEEEEcccCC--ceeEEEEeC----C-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 421 -ITQEYDQHLG--AVNTITFVD----S-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 421 -~~~~~~~h~~--~V~~i~~~p----~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
.+..+..|.- ....+++-| . ..++.+-+.||.+.+|+-+.-.....+. ..--...+++.+....|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEEEEecC
Confidence 1111112221 222333332 1 3567788999999999976554433332 2333445788889999999999
Q ss_pred CCeEEEEEc
Q 007757 493 DNQILIYST 501 (590)
Q Consensus 493 dg~I~iwd~ 501 (590)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 999999875
No 405
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.43 E-value=3.9 Score=42.44 Aligned_cols=224 Identities=17% Similarity=0.135 Sum_probs=106.8
Q ss_pred EEEecCCCEEEEEeC-C--CeEEEEECCCCcEEEEccCCCC-ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE
Q 007757 349 ISFCNDGTKFLTASY-D--KNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 424 (590)
Q Consensus 349 l~fspdg~~l~s~s~-D--g~I~vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~ 424 (590)
=+|.++|+.|+.++. | ..+.+.|+.+++..+....... .....+++.. +.++-......|+-.|+++.+....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~---~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD---RALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS---SEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC---CeEEEEECCCeEEEEECCcCcEEEE
Confidence 357788977776554 4 5677789999988776654322 2234444443 3454444567899999999987777
Q ss_pred EcccCCceeEEEEe--CCCCEEEEEe----------------------CCCcEEEEECCCCcEEEEeecCCCCcccEEEE
Q 007757 425 YDQHLGAVNTITFV--DSNRRFVTSS----------------------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 425 ~~~h~~~V~~i~~~--p~~~~l~s~s----------------------~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
+......+-...|. .++..++-.- -...|.-.|+.++.....+. ....+..+.+
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~f 195 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQF 195 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCccc
Confidence 76666666556664 3455543321 12235555666655444432 3445678889
Q ss_pred cCCCCEEEEEEcCC-----eEEEEEccCc-eeecccccccCcccccceEEEEEcCCCCEEEEEe-----CCCcEEEEeCC
Q 007757 481 HPNTNWLAAQSLDN-----QILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-----GEGKCWFWDWK 549 (590)
Q Consensus 481 sp~g~~l~s~s~dg-----~I~iwd~~~~-~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-----~dg~I~iwd~~ 549 (590)
+|....+++-|..| .-+||-++.. .....+ ..+.....+..=-|.|||..|.--+ .+..|.-+|..
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v---~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV---HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES---S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee---ecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99766555544332 1255554332 111111 1122233444557899999876422 24457778888
Q ss_pred CCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCC
Q 007757 550 SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 550 t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
+++....... ..+..+.-++ ++.+++-=|.|
T Consensus 273 t~~~~~~~~~--p~~~H~~ss~-Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEM--PWCSHFMSSP-DGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE---SEEEEEE-T-TSSEEEEEE--
T ss_pred CCCceEEEeC--CceeeeEEcC-CCCEEEecCCC
Confidence 8765443322 2355566666 56666544444
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=95.34 E-value=4.1 Score=42.07 Aligned_cols=272 Identities=12% Similarity=0.107 Sum_probs=131.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec----cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 374 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t 374 (590)
...+++|.|... .+-+++|. +|.| |...+.++.-.... .....+.++.|..+ ..+++ +..+.|.. ..+.
T Consensus 45 ~~~l~~v~F~d~-~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDP-NHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDG 117 (334)
T ss_pred CCceEEEEEeCC-CcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCC
Confidence 557889999855 56666664 4543 43323332222211 12234778888643 33444 44444332 2222
Q ss_pred CcEEEEccC----CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-cccCCceeEEEEeCCCCEEEEEeC
Q 007757 375 GQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 375 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
|+.-..+.. ......+... .. ...+++ +..|.|..= ...|+.-..+ ..-.+.+.++.+.+++.+++++ .
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~--~~-~~~~~~-g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~ 191 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITAL--GP-GTAEMA-TNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-S 191 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEE--CC-Ccceee-eccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCeEEEEe-C
Confidence 322222211 1111111111 11 122333 334433321 1122222221 1224578899999887655544 4
Q ss_pred CCcEEE-EECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEc
Q 007757 450 DKSLRV-WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 450 Dg~I~i-wdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
.|.+.. ++ ........+.......+.++.+.+++..++++ ..|.+++=+...+........ ........+..+.+.
T Consensus 192 ~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~ 268 (334)
T PRK13684 192 RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPII-PEITNGYGYLDLAYR 268 (334)
T ss_pred CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccC-CccccccceeeEEEc
Confidence 565543 22 12233333444566788999999998877665 457664323333322221111 101112345678899
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 529 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+++..+++| .+|.|. .....++....... -......+.|.. ++. .+..|..|.|--|+
T Consensus 269 ~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~-~~~~G~~G~il~~~ 329 (334)
T PRK13684 269 TPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEK-GFVLGQRGVLLRYV 329 (334)
T ss_pred CCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCc-eEEECCCceEEEec
Confidence 988766655 466554 34455554444332 123577788776 444 45566688887664
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.14 Score=58.48 Aligned_cols=143 Identities=11% Similarity=0.059 Sum_probs=89.3
Q ss_pred ceeEEEEecCCCEEEEE--eCCCeEEEEECCCCcEEE--------E----ccCCCCceEEEEecCCCCCcEEEEEEcCCc
Q 007757 345 AVRDISFCNDGTKFLTA--SYDKNIKYWDTETGQVIR--------T----FSTGKIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~--s~Dg~I~vWd~~t~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
.|..+...+|+...++. +.+-.|.++|+++-..-. . +.......++.|.|.-. ...++...|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--LNSAVDLSDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--chhhhhccccc
Confidence 45566666776655443 334588999987543211 1 11122334455555443 45777888999
Q ss_pred EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec---CCCCcccEEEEcCCCCEE
Q 007757 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWL 487 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~~i~~i~~sp~g~~l 487 (590)
|++.-+........--.....++|++|+|.|+.++.|-..|++.-|...-. ....+.. .....|.+|+|.....++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 988877543222111124567899999999999999999999998875332 2222222 224679999998877776
Q ss_pred EEE
Q 007757 488 AAQ 490 (590)
Q Consensus 488 ~s~ 490 (590)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 654
No 408
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.30 E-value=4.5 Score=42.35 Aligned_cols=197 Identities=16% Similarity=0.074 Sum_probs=106.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEccCCC---CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccC-
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL- 429 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~- 429 (590)
++ .++.+..+|.|.-.|.+++..+....... ....-.+..+ ..+++++.++.++.+|.++|+.+..+....
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~----G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD----GKIYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC----CeEEEecccceEEEEECCCCcEEEEEecCCC
Confidence 44 45555788999999999999776554432 1111111112 248889999999999999999988886555
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC--CCcccEEEEcCCCCEEEEEEc--CCeEEEEEccCce
Q 007757 430 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERF 505 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~--~~~i~~i~~sp~g~~l~s~s~--dg~I~iwd~~~~~ 505 (590)
..+..-....++ .+..++.++.+...+..++...-...... ...+..-.. .....++.+.. ++.+.-++..++.
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCc
Confidence 112222222233 33444467888777777666654432211 111111111 12333444444 4556666665554
Q ss_pred eecccccc--cCcc-----cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC
Q 007757 506 QLNKKKRF--AGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 560 (590)
Q Consensus 506 ~~~~~~~~--~~~~-----~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h 560 (590)
.....+.. .+.. .......+.. +.-++.++.+|.+...|..+++.+..+...
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYV---DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEE---CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 33221110 0000 0000000111 222366777888999999999999888764
No 409
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.27 E-value=4.4 Score=46.55 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=73.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEccCCCCce-------E--EEEecC-------------CCCCcEEEEEEcCCcEE
Q 007757 355 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-------V--VKLNPD-------------DDKQNILLAGMSDKKIV 412 (590)
Q Consensus 355 g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~-------~--~~~~~~-------------~~~~~~lvsg~~dg~I~ 412 (590)
+..|+.++.++.|.-.|..+|+.+.++....... | +.+... ......++.++.|+.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 5577778888999999999999998876543211 0 111110 01224688899999999
Q ss_pred EEECCCCceEEEEcccCCcee-------------EEEEeC--CCCEEEEEeC----------CCcEEEEECCCCcEEEEe
Q 007757 413 QWDMNTKEITQEYDQHLGAVN-------------TITFVD--SNRRFVTSSD----------DKSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 413 vwDl~t~~~~~~~~~h~~~V~-------------~i~~~p--~~~~l~s~s~----------Dg~I~iwdl~~~~~~~~~ 467 (590)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++++. +|.|+-+|..+++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999887632 22110 011111 1335666642 688999999999988776
Q ss_pred e
Q 007757 468 S 468 (590)
Q Consensus 468 ~ 468 (590)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 410
>PRK10115 protease 2; Provisional
Probab=95.19 E-value=7.6 Score=44.33 Aligned_cols=112 Identities=11% Similarity=0.098 Sum_probs=65.8
Q ss_pred CceeEEEEecCCCEEEEEeC-----CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC-----CcEEE
Q 007757 344 KAVRDISFCNDGTKFLTASY-----DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQ 413 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~-----Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~v 413 (590)
-.+..+.|+|+|++|+.+.. .-.|++.|+.+|..+...... ....+.|.+++. .++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~~~~~w~~D~~--~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VEPSFVWANDSW--TFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cceEEEEeeCCC--EEEEEEecCCCCCCCEEEE
Confidence 34667889999998886533 236889999988643222112 123466666543 455554432 47888
Q ss_pred EECCCC--ceEEEEcccCCcee-EEEEeCCCCEEEEEeC---CCcEEEEEC
Q 007757 414 WDMNTK--EITQEYDQHLGAVN-TITFVDSNRRFVTSSD---DKSLRVWEF 458 (590)
Q Consensus 414 wDl~t~--~~~~~~~~h~~~V~-~i~~~p~~~~l~s~s~---Dg~I~iwdl 458 (590)
+++.++ +-...+........ .+..+.++++++..+. ++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 999887 33334433223333 3333447777655433 457888885
No 411
>PHA03098 kelch-like protein; Provisional
Probab=95.11 E-value=1.1 Score=49.49 Aligned_cols=190 Identities=11% Similarity=0.047 Sum_probs=90.1
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC-----CcEEEEECCCCceE
Q 007757 354 DGTKFLTASYDK------NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEIT 422 (590)
Q Consensus 354 dg~~l~s~s~Dg------~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~vwDl~t~~~~ 422 (590)
++..++.|+.++ .+..||..+++....-.............. ++.+++.|+.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556667776542 577888887765432221111111111111 23677777765 35778888776432
Q ss_pred EEEcc-cCCceeEEEEeCCCCEEEEEeCC------CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC--
Q 007757 423 QEYDQ-HLGAVNTITFVDSNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-- 493 (590)
Q Consensus 423 ~~~~~-h~~~V~~i~~~p~~~~l~s~s~D------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-- 493 (590)
..-.. +...-.+++. -+++.++.|+.+ ..+..||..+..-......+......+++. .++..++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCC
Confidence 21110 1111112222 256677777632 457888887654332211111111122222 355566666543
Q ss_pred ------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 007757 494 ------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 552 (590)
Q Consensus 494 ------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~ 552 (590)
..+.+||..+.. ........... .....+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNK-WTELSSLNFPR--INASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCc-eeeCCCCCccc--ccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 237888876532 11111111111 11111222 66777777654 467888876643
No 412
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.81 E-value=1.8 Score=42.60 Aligned_cols=196 Identities=15% Similarity=0.228 Sum_probs=106.9
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCC-----CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC----
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMD-----TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---- 363 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~D-----g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~---- 363 (590)
+.|-||. .|+|+ |.+|...-.| |.|-|||.......+-.+..|.-.-..+.|.+||+.++.+..
T Consensus 113 RHfyGHG------vfs~d-G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 113 RHFYGHG------VFSPD-GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred ceeeccc------ccCCC-CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 3455776 59999 8888776443 789999997666777788889888899999999999988742
Q ss_pred --------------CCeEEEEECCCCcEEEEccCCCC--ceEEEEecCCCCCcEEEEEE-cCC-----cEEEEECCCCce
Q 007757 364 --------------DKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGM-SDK-----KIVQWDMNTKEI 421 (590)
Q Consensus 364 --------------Dg~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~-~dg-----~I~vwDl~t~~~ 421 (590)
.-++.+.|..+|.++........ ...+.-...+.++. +..|+ ..| --.+=....++.
T Consensus 186 hpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 186 HPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred ccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCc
Confidence 01233444444444433322211 01111111111111 22221 111 001111112222
Q ss_pred EEEEcc-------cCCceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007757 422 TQEYDQ-------HLGAVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 422 ~~~~~~-------h~~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d 493 (590)
+.-+.. ....|-+|+.+.+..+++.++- .+...+||..++..+..-.... ... +.+...-|++.+.+
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaG--va~~~~gf~vssg~ 339 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAG--VAAAKGGFAVSSGQ 339 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---ccc--ceeccCceEEecCC
Confidence 222211 2234667777766556655554 4567789999987765443221 122 22334456777888
Q ss_pred CeEEEEEc
Q 007757 494 NQILIYST 501 (590)
Q Consensus 494 g~I~iwd~ 501 (590)
|.|.+++-
T Consensus 340 G~~~~~s~ 347 (366)
T COG3490 340 GRIIFYSR 347 (366)
T ss_pred ceEEeccc
Confidence 98888853
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=94.78 E-value=2 Score=46.84 Aligned_cols=171 Identities=8% Similarity=-0.033 Sum_probs=78.2
Q ss_pred CCEEEEEeCCC-----cEEEEEccCCCeeEE--EeccCCCceeEEEEecCCCEEEEEeCC--CeEEEEECCCCcEEEEcc
Q 007757 312 GHLILSAGMDT-----KVKIWDVVNSGKCMR--TYMGHSKAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 312 g~~L~sgs~Dg-----~I~iWd~~~~~~~~~--~~~~h~~~V~~l~fspdg~~l~s~s~D--g~I~vWd~~t~~~~~~~~ 382 (590)
+.+++.||.++ .+..||.. ...... .+....... +++ .-++...+.|+.+ ..+..||..+++....-.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~-~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYI-SNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECC-CCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 56667777653 45667763 322211 111111111 122 2367777777764 457888877665433222
Q ss_pred CCCCceEEEEecCCCCCcEEEEEEcCC---cEEEEECCCCceEEE--EcccCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007757 383 TGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQE--YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~lvsg~~dg---~I~vwDl~t~~~~~~--~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
............. ++.+.+.|+.++ .+..||.++.+-... +...... .+++ .-++..++.|+ .+.+||
T Consensus 349 l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~GG---~~e~yd 421 (480)
T PHA02790 349 LLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLVGR---NAEFYC 421 (480)
T ss_pred CCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEECC---ceEEec
Confidence 2222211111111 236777777553 467788876643221 1111111 1222 22455666663 577888
Q ss_pred CCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007757 458 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d 493 (590)
..+..-...-..+....-.+++. -+++..++|+.+
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~ 456 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFY 456 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcC
Confidence 87654332211111111122222 255666666543
No 414
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=4.8 Score=39.84 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=95.4
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE---EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t 418 (590)
-..-+.++.++ +++...+..+.-++|.|+.+...- ..+...+ +...+.-. +++..++..+..+.+.|+.+
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vs---Gn~aYVadlddgfLivdvsd 157 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVS---GNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEec---CCEEEEeeccCcEEEEECCC
Confidence 34556677776 457778888888999999876433 3333333 33333333 26777877777788888875
Q ss_pred C---ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC-cccEEEEcCCCCEEEEEEcCC
Q 007757 419 K---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 419 ~---~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-~i~~i~~sp~g~~l~s~s~dg 494 (590)
. .+...+....+.-..++.+ |++-..+..|+-+.+-|+..+.....+..-..+ .+.++..+++..+++.. +-
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~e 233 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DE 233 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--cc
Confidence 4 3444444444444566665 677778888999999999876655544332333 57777777766665554 33
Q ss_pred eEEEEEccCc
Q 007757 495 QILIYSTRER 504 (590)
Q Consensus 495 ~I~iwd~~~~ 504 (590)
-+.+-|..+.
T Consensus 234 gvlivd~s~~ 243 (370)
T COG5276 234 GVLIVDVSGP 243 (370)
T ss_pred ceEEEecCCC
Confidence 3555555443
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.69 E-value=0.086 Score=37.13 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=29.5
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 007757 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~ 553 (590)
...|..++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 455778999999999999999999999998 5544
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.58 E-value=0.11 Score=36.63 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.9
Q ss_pred CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE
Q 007757 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
...|.+++|+|...+||.++.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 417
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=2.4 Score=46.97 Aligned_cols=194 Identities=13% Similarity=0.164 Sum_probs=99.5
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
-++..+|..+|..-.-+. +.--.|+|+++ .|.++..+.-....+..+.|+.+. .|++...+|+++||++-. ..+
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~--sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~i 116 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI--SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFI 116 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEec--cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhh
Confidence 344555666653111112 33456889987 677777666555588999999654 577788999999999853 323
Q ss_pred EEccCC------CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc-cCCce--eEEEEeCCCCE---EEE
Q 007757 379 RTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAV--NTITFVDSNRR---FVT 446 (590)
Q Consensus 379 ~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~-h~~~V--~~i~~~p~~~~---l~s 446 (590)
..+..+ ....|..|. ++ +++-..+|.+.+..-........+.. ..... +|-+..++++. ++-
T Consensus 117 e~~svg~e~~~~~I~ec~~f~----~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~ 190 (829)
T KOG2280|consen 117 ESNSVGFESQMSDIVECRFFH----NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLD 190 (829)
T ss_pred cccccccccccCceeEEEEec----Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEe
Confidence 222111 111122222 11 44445556665543322222233322 11111 23333333221 111
Q ss_pred Ee-CCCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee
Q 007757 447 SS-DDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 447 ~s-~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 506 (590)
.. ..+ ..++-.... .....+.. ....+..+.++|+.++|+.-...|.|.+-+......
T Consensus 191 v~~~v~-~~~~q~~~~~~q~~~~~~-~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 191 VDVAVG-LHICQVEESRVQLHALSW-PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred echhhh-hcccceecccccccccCC-CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 10 000 011111111 11112221 235678899999999999999999999988765443
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.96 E-value=0.55 Score=49.41 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=94.8
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCC----cEEEEEEcCCcEEEEECCCCc-eE--EEE
Q 007757 354 DGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ----NILLAGMSDKKIVQWDMNTKE-IT--QEY 425 (590)
Q Consensus 354 dg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~----~~lvsg~~dg~I~vwDl~t~~-~~--~~~ 425 (590)
+.++|+ .++.-..+.-.|++.|+++.....+... ++.+.|...-. ..-++|-++..|.-.|.+-.. .+ ...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 4555567888899999999988887776 66776654321 225677788888888887432 11 111
Q ss_pred cc--cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 426 DQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 426 ~~--h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
+. .....+|+.-. .+.+++.+|..|-|++||- .+...++........|..|..+.+|+++++.| ...|.+.|++
T Consensus 557 KdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDR-ig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDR-IGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred hhccccccccccccc-cCceEEEecCCCceeeehh-hcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 11 11122333333 3459999999999999994 44444444445677899999999999988876 4567777764
No 419
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.89 E-value=6.7 Score=40.13 Aligned_cols=104 Identities=8% Similarity=0.108 Sum_probs=51.7
Q ss_pred cEEEEEEcC-----CcEEEEECCCCce---EEEEcccCCce--eEEEEeCCCCEEEEEeC-----CCcEEEEECCCCcEE
Q 007757 400 NILLAGMSD-----KKIVQWDMNTKEI---TQEYDQHLGAV--NTITFVDSNRRFVTSSD-----DKSLRVWEFGIPVVI 464 (590)
Q Consensus 400 ~~lvsg~~d-----g~I~vwDl~t~~~---~~~~~~h~~~V--~~i~~~p~~~~l~s~s~-----Dg~I~iwdl~~~~~~ 464 (590)
.+++.|+.+ ..+..||+.+... ...+..-..+. .+++.. ++..++.|+. ...+..||+.+..-.
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 567777654 3577788776653 12221111111 222332 4666677764 235788888765433
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCC----eEEEEEccCc
Q 007757 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDN----QILIYSTRER 504 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg----~I~iwd~~~~ 504 (590)
..-..+........+...++++.+.|+.++ .+.+||+.+.
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 221111111122222334566777776653 3567887653
No 420
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=3.7 Score=38.58 Aligned_cols=176 Identities=11% Similarity=-0.013 Sum_probs=92.3
Q ss_pred cEEEEEEc--CCcEEEEECCCCceEEEEcccCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCCCCccc
Q 007757 400 NILLAGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 476 (590)
Q Consensus 400 ~~lvsg~~--dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~ 476 (590)
+++.+.+. ...|++||+.+++.+.+..-....+..=-...-+. ..+..-.+|.-..+|.++.+.+..+.- .+.-.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y--~GeGW 134 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY--EGEGW 134 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc--CCcce
Confidence 55665554 35799999999987766432211111111111122 333445678888899888777766542 22233
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccc-ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 007757 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 477 ~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
.++ .+++-|+.+.....++.-|..+-........ +.+.. -..+..+.|- +|.+.+-.-.+..|...+..+|+.+.
T Consensus 135 gLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p-v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP-VSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee-cccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 333 3555566665555666655544222211111 11110 1111122221 34444444344455566666776665
Q ss_pred EEe------------cCCCCEEEEEEcCCCCCEEEEEe
Q 007757 556 TLK------------CHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 556 ~l~------------~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
.+. .|....+.+++.|+...+++||-
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 543 24557789999997667777763
No 421
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.73 E-value=0.22 Score=55.62 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=77.5
Q ss_pred ccCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCC------CcEEEEeecCCCCcccEEEEcC---CCCEEEEEEcCCeE
Q 007757 427 QHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHP---NTNWLAAQSLDNQI 496 (590)
Q Consensus 427 ~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~------~~~~~~~~~~~~~~i~~i~~sp---~g~~l~s~s~dg~I 496 (590)
+..+.|-.+.|-.. ...+. -.-|.+.||++.. ......+..+....+.-+.|.| +.-++.++-.++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 44556666666421 11111 2346788898742 2233344445555566666665 56778888888888
Q ss_pred EEEEccCceeecccccccCcc---------cccceEEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCeEEEEEecCCC
Q 007757 497 LIYSTRERFQLNKKKRFAGHI---------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-----SCKVFRTLKCHEG 562 (590)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~~---------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~-----t~~~~~~l~~h~~ 562 (590)
++..+..... ..+.+|. ..+++.--.+||||..++..+.||.+++|.+. .-+|+..++.|++
T Consensus 208 ~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 208 RLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred eEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 8876654322 2233331 12233334589999999999999999888753 3456666777774
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.72 E-value=1.7 Score=48.19 Aligned_cols=100 Identities=11% Similarity=0.188 Sum_probs=69.2
Q ss_pred cEEEEEEcCCcEEEEECCCCceEEEEc-ccCCceeEEEEe--CCCCEEEEEeCCCcEEEEECC---------CCcEEEEe
Q 007757 400 NILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFV--DSNRRFVTSSDDKSLRVWEFG---------IPVVIKYI 467 (590)
Q Consensus 400 ~~lvsg~~dg~I~vwDl~t~~~~~~~~-~h~~~V~~i~~~--p~~~~l~s~s~Dg~I~iwdl~---------~~~~~~~~ 467 (590)
...++.+....+.|||.+.+.+..+-. ...+.|.++.|. |+++.+++.+-...|.+|--. .-..++.+
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 344555556789999999887544332 356889999987 688899999999999998531 11233333
Q ss_pred --ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 468 --SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 468 --~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
.....++|....|.++|.+++.+ ++++.|+|-
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 22244789999999999666544 577888864
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.48 E-value=3.4 Score=43.32 Aligned_cols=146 Identities=11% Similarity=0.069 Sum_probs=76.7
Q ss_pred CceeEEEEeCCCCEEEEEe-----------CCC-cEEEEECCC--Cc--EEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007757 430 GAVNTITFVDSNRRFVTSS-----------DDK-SLRVWEFGI--PV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s-----------~Dg-~I~iwdl~~--~~--~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d 493 (590)
.....|+|.++|+.+++.. ..+ .|.+++-.. ++ ....+.. .......+++.+++ |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 4556788888888776653 223 666665432 22 2233332 33456789999888 4444444
Q ss_pred CeEEEE-EccCc-----eeecccccccCcc--cccceEEEEEcCCCCEEEEEeCC-------------------CcEEEE
Q 007757 494 NQILIY-STRER-----FQLNKKKRFAGHI--VAGYACQVNFSPDGRFVMSGDGE-------------------GKCWFW 546 (590)
Q Consensus 494 g~I~iw-d~~~~-----~~~~~~~~~~~~~--~~~~v~~v~~spdg~~l~sgs~d-------------------g~I~iw 546 (590)
.|..| +.... ........+.... .......+.|.|||.+.++-+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 34444 44321 1111111222210 12335679999999876644421 446666
Q ss_pred eCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEe
Q 007757 547 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 547 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
+..+++....-.++ .....++|++ .+.++++-.
T Consensus 170 ~pdg~~~e~~a~G~-rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAHGF-QNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEecCc-CCCccceECC-CCCEEEEcc
Confidence 65555433222233 3357899999 566666543
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=0.66 Score=53.31 Aligned_cols=128 Identities=10% Similarity=0.001 Sum_probs=78.9
Q ss_pred EcCCcEEEEECCCCceEE-----EEc------ccCCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCCCC
Q 007757 406 MSDKKIVQWDMNTKEITQ-----EYD------QHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 406 ~~dg~I~vwDl~t~~~~~-----~~~------~h~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
..+-.|+.||+++-.... -+. .......++.|+|.-. ..+.+..|+.|++..+........- .+...
T Consensus 121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~ 199 (1405)
T KOG3630|consen 121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTN 199 (1405)
T ss_pred cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCccc
Confidence 334478899997542211 111 1223456778877532 4567778899998876543322211 24667
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007757 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
..++++|+|.|+.+++|-..|++.-|...-... ..+....... ...|.+|+|-....+|++
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~~ip~Pp~~e-~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-SEIPEPPVEE-NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeeccccee-ecccCCCcCC-CcceeEEEEecceeEEEE
Confidence 789999999999999999999999887543211 1111111111 356788888776666654
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.29 E-value=2.2 Score=46.09 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=86.3
Q ss_pred CceeEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCC----CEEEEEEcCCeEEEEEccC
Q 007757 430 GAVNTITFVDSNRRFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT----NWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s--~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g----~~l~s~s~dg~I~iwd~~~ 503 (590)
.+|..++|......+++.- .+|.+++=| ...+.. ...|..++|.|-+ ..|++......|.+|.+..
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGq-----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQ-----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeec-----cceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4788999984333333332 344444322 223333 3357889999852 2344445578899998752
Q ss_pred ce--eecccccccCcc---cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEecCCCCEEEEEEcCCCCCE
Q 007757 504 RF--QLNKKKRFAGHI---VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKVFRTLKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 504 ~~--~~~~~~~~~~~~---~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--~~~~~~l~~h~~~V~~v~~sp~~~~~ 576 (590)
.. .-+.......++ ...-...+.|+|....|++-.....-.++++.. .+...-++ ..+.|.|.+|.+++.++
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEE
Confidence 11 100000000010 001112367999998887766555545566543 33333343 46779999999977777
Q ss_pred EEEEeCCCcEEEeC
Q 007757 577 VATCGWDGLIKYWD 590 (590)
Q Consensus 577 l~s~g~DG~I~iWD 590 (590)
+++.|..=.-+|||
T Consensus 171 VVAvGSsLHSyiWd 184 (671)
T PF15390_consen 171 VVAVGSSLHSYIWD 184 (671)
T ss_pred EEEeCCeEEEEEec
Confidence 77777766678897
No 426
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.22 E-value=4 Score=35.66 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=71.8
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEEccCCC-------eeEEEeccCCCceeEEEEec-----CCCEEEEEeCCCeEEEEE
Q 007757 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------KCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 304 ~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~-------~~~~~~~~h~~~V~~l~fsp-----dg~~l~s~s~Dg~I~vWd 371 (590)
.-+|... ...|+.++.-|+|.|++..... ..++. ..-...|++|+-.+ ....|+.|+ ...|..||
T Consensus 3 iGkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~-LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISF-LNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred EEEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeE-EECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 3456555 5578888889999999873221 12232 33566788887554 234566665 57899999
Q ss_pred CCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE
Q 007757 372 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 372 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~ 425 (590)
+....-+..........++.+-.......-++..+.+..|.-||..-.+..++.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 988776655444455555544333332233444445677777777665555443
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.13 E-value=13 Score=42.34 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=52.1
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCC----------C-c--EEEEe-------ecCCCCcccEEEEcCC---CCE
Q 007757 430 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGI----------P-V--VIKYI-------SEPHMHSMPSISLHPN---TNW 486 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~----------~-~--~~~~~-------~~~~~~~i~~i~~sp~---g~~ 486 (590)
-.|..|.++++|.+++..|..| |.|-.+.. + . ..+.+ .......|..+.|||. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3578899999999999888755 44444421 0 1 11111 1123456889999997 578
Q ss_pred EEEEEcCCeEEEEEccCce
Q 007757 487 LAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 487 l~s~s~dg~I~iwd~~~~~ 505 (590)
|++-+.|+.|++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999997543
No 428
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.03 E-value=4.8 Score=45.24 Aligned_cols=103 Identities=16% Similarity=0.269 Sum_probs=71.2
Q ss_pred CCcEEEEEEcCCcEEEEECCC-------C----c---------eEEEEcccCCceeEEEEe--CCCCEEEEEeCCCcEEE
Q 007757 398 KQNILLAGMSDKKIVQWDMNT-------K----E---------ITQEYDQHLGAVNTITFV--DSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t-------~----~---------~~~~~~~h~~~V~~i~~~--p~~~~l~s~s~Dg~I~i 455 (590)
+..+|+++..||.|.+|.+.+ . . +...+ .-...+.+++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 346899999999999997631 0 0 11111 123467889998 77888888888888888
Q ss_pred EECCCC--cEEEEeecCCCCcccEEEEcCCC---C---EEEEEEcCCeEEEEEc
Q 007757 456 WEFGIP--VVIKYISEPHMHSMPSISLHPNT---N---WLAAQSLDNQILIYST 501 (590)
Q Consensus 456 wdl~~~--~~~~~~~~~~~~~i~~i~~sp~g---~---~l~s~s~dg~I~iwd~ 501 (590)
|-+... .....-...+.+.|++|+|-++. . +|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 866442 11111122477889999998753 2 7888899999999888
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=92.87 E-value=7.2 Score=42.48 Aligned_cols=144 Identities=8% Similarity=-0.047 Sum_probs=67.6
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC--CcEEEEECCCCceEEEEc
Q 007757 354 DGTKFLTASYD-----KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~vwDl~t~~~~~~~~ 426 (590)
++..++.|+.+ ..+..||..++.....-.............. ++.+.++|+.+ ..+..||..+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 34556666654 3567788877665443222211111111111 23567777753 457888877654322111
Q ss_pred ccCCceeEEEEeCCCCEEEEEeCCC---cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 427 QHLGAVNTITFVDSNRRFVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
-...........-+++..+.|+.++ .+..||..+..-...-..+....-.+++ .-++++.+.| |.+.+||..+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecCCC
Confidence 1111111111223577778877553 4677887665433221111111111222 2345555555 3567788754
No 430
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.87 E-value=4.6 Score=43.73 Aligned_cols=153 Identities=11% Similarity=0.093 Sum_probs=88.5
Q ss_pred CceeEEEEecCCCEEE-EEe--CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCC-cEEEEEEcCCcEEEEECC--
Q 007757 344 KAVRDISFCNDGTKFL-TAS--YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMN-- 417 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~-s~s--~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~lvsg~~dg~I~vwDl~-- 417 (590)
.+|..++|. ||+.++ +.- .+|.+++=| ...+..|. .+..+.|.|..... ..+++......|.+|.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 468889997 565544 332 233333322 22333332 34456666653322 357777888999999885
Q ss_pred ---CCceEEEEcccC---Cc--eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEE
Q 007757 418 ---TKEITQEYDQHL---GA--VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 418 ---t~~~~~~~~~h~---~~--V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s 489 (590)
+++.+.....+- -+ -..+.|+|....|++-.....-.+++++.............+-|.|.+|.++|..|++
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 222222211111 11 2457899988887766555444566665444333333356778999999999998777
Q ss_pred EEcC-CeEEEEEccC
Q 007757 490 QSLD-NQILIYSTRE 503 (590)
Q Consensus 490 ~s~d-g~I~iwd~~~ 503 (590)
+-.. =.-+|||-..
T Consensus 173 AvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 173 AVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeCCeEEEEEecCch
Confidence 6433 3467887543
No 431
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.84 E-value=12 Score=37.90 Aligned_cols=230 Identities=13% Similarity=0.144 Sum_probs=103.3
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEc--cCCC--CceEEEEecCCCCCcEEEEEEcCCcEEEEECC
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF--STGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 417 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~--~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~ 417 (590)
-...+.+|.|.....-+++|. .+.| +-..+.|+.=... .... ......+.+.+. ..+++|. .+ +.+....
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~-~g-~ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGE-PG-LLLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEE-TT-EEEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcC-Cc-eEEEecC
Confidence 455789999996555566654 4543 2222333221111 1111 112222232222 3455553 33 4444444
Q ss_pred CCceEEEEc---ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC
Q 007757 418 TKEITQEYD---QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 418 t~~~~~~~~---~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 494 (590)
.++.-..+. .-.+....+....++..++ .+..|.|+. ..+.+..-..+.......+..+..+++|.++++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 454333332 1223344555555554444 344555433 22334444444445667788889999999999887666
Q ss_pred eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEEE--Ee--cCCCCEEEEEE
Q 007757 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKVFRT--LK--CHEGVCIGCEW 569 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd-~~t~~~~~~--l~--~h~~~V~~v~~ 569 (590)
...-|+.-... .....+ .....+..+.|+|++.+.+.+ ..|.|++=+ ......... .. ...-.+..++|
T Consensus 167 ~~~s~~~G~~~-w~~~~r----~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 167 FYSSWDPGQTT-WQPHNR----NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp EEEEE-TT-SS--EEEE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred EEEEecCCCcc-ceEEcc----CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 66677753211 111111 124567789999998877655 788888877 222222222 11 12224899999
Q ss_pred cCCCCCEEEEEeCCCcEE
Q 007757 570 HPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 570 sp~~~~~l~s~g~DG~I~ 587 (590)
.+ .....++|+ .|.|.
T Consensus 241 ~~-~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 241 RP-PNEIWAVGG-SGTLL 256 (302)
T ss_dssp SS-SS-EEEEES-TT-EE
T ss_pred cC-CCCEEEEeC-CccEE
Confidence 98 555666555 55543
No 432
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.81 E-value=10 Score=38.14 Aligned_cols=170 Identities=11% Similarity=0.172 Sum_probs=90.1
Q ss_pred eEEEEECCCCcEEEEccCCCCc-------eEEEEecCCC---CCcEEEEEEcCCcEEEEECCCCceEEEEcccC------
Q 007757 366 NIKYWDTETGQVIRTFSTGKIP-------YVVKLNPDDD---KQNILLAGMSDKKIVQWDMNTKEITQEYDQHL------ 429 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~------ 429 (590)
.|.+||+.+++.++++..+... ..+.+..... .....++=+..+.|.++|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999998887654322 2233333221 12344555556799999999987766654322
Q ss_pred -------------CceeEEEEeC---CCCEEEEEeCCCcEEEEECC-----CC---------cEEEEeecCCCCcccEEE
Q 007757 430 -------------GAVNTITFVD---SNRRFVTSSDDKSLRVWEFG-----IP---------VVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 430 -------------~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~-----~~---------~~~~~~~~~~~~~i~~i~ 479 (590)
..+..++.+| ++++|.-..-.+. ++|.+. .. ..+..+.. .......++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc-cCCCCceEE
Confidence 1244444443 4444444433221 223221 11 01122211 113556788
Q ss_pred EcCCCCEEEEEEcCCeEEEEEccCceeecccccc-cCcccccceEEEEEcC--CCCEEEEE
Q 007757 480 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVAGYACQVNFSP--DGRFVMSG 537 (590)
Q Consensus 480 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~v~~v~~sp--dg~~l~sg 537 (590)
++++|.++++--..+.|..|+............+ .....-.++..+.+.+ +|.+.+..
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9999999999889999999998864332222221 1121134566788888 66655544
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.78 E-value=9.1 Score=36.35 Aligned_cols=101 Identities=18% Similarity=0.335 Sum_probs=64.9
Q ss_pred EEEEEcCCcEEEEECCC--CceEEEEcccCCceeEEEEeCCCCEEEEEeCC------CcEEEE-ECCC------CcE---
Q 007757 402 LLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDSNRRFVTSSDD------KSLRVW-EFGI------PVV--- 463 (590)
Q Consensus 402 lvsg~~dg~I~vwDl~t--~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D------g~I~iw-dl~~------~~~--- 463 (590)
|+.+...+.|.+|++.. .+....+. .-+.|..+.++..|+++++--.+ ..+|+| +++. +..
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 44446778899999983 34566665 44889999999999999986332 256664 2221 111
Q ss_pred ----------------EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 464 ----------------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 464 ----------------~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
+..+..|...++.+++..|-..-|++|+ ++.+.+|.+...
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1122224455677888888655566655 677889987654
No 434
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.42 E-value=15 Score=37.89 Aligned_cols=231 Identities=16% Similarity=0.223 Sum_probs=111.6
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCee---EEEe----ccCCCceeEEEEecC----CCEEEEEeCC------
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC---MRTY----MGHSKAVRDISFCND----GTKFLTASYD------ 364 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~---~~~~----~~h~~~V~~l~fspd----g~~l~s~s~D------ 364 (590)
-++|+|.|+ +.+|++ ...|.|++++. .+.. +..+ .........++|+|+ +.+.++.+..
T Consensus 4 P~~~a~~pd-G~l~v~-e~~G~i~~~~~--~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 4 PRSMAFLPD-GRLLVA-ERSGRIWVVDK--DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp EEEEEEETT-SCEEEE-ETTTEEEEEET--TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred ceEEEEeCC-CcEEEE-eCCceEEEEeC--CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 578999999 877665 56999999993 3332 3332 234557899999994 3333333321
Q ss_pred --CeEEEEECCCC-------cEE-EEcc----CCCCceEEEEecCCCCCcEEEEEEcC-------------CcEEEEECC
Q 007757 365 --KNIKYWDTETG-------QVI-RTFS----TGKIPYVVKLNPDDDKQNILLAGMSD-------------KKIVQWDMN 417 (590)
Q Consensus 365 --g~I~vWd~~t~-------~~~-~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~d-------------g~I~vwDl~ 417 (590)
..|.-|....+ +.+ ..+. ..|....+.|.+++ .++++.+.. |+|.-.+..
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG---~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG---KLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS---EEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC---cEEEEeCCCCCcccccccccccceEEEeccc
Confidence 23444544333 111 1212 23555567777654 344443332 233333332
Q ss_pred CC--------------ceEEEEcccCCceeEEEEeCC-CCEEEEE-eCCCcEEEEECCCC--------------------
Q 007757 418 TK--------------EITQEYDQHLGAVNTITFVDS-NRRFVTS-SDDKSLRVWEFGIP-------------------- 461 (590)
Q Consensus 418 t~--------------~~~~~~~~h~~~V~~i~~~p~-~~~l~s~-s~Dg~I~iwdl~~~-------------------- 461 (590)
.. ..+.. .++. ....++|.|. +.++++- +.++.=.|--+..+
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A-~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYA-YGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEE-E--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred CcCCCCCccccCCCceEEEEE-eCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 11 00000 1122 2357889988 5544432 22222122111110
Q ss_pred ---------cEEEEeecCCCCcccEEEEcC-------CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEE
Q 007757 462 ---------VVIKYISEPHMHSMPSISLHP-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 462 ---------~~~~~~~~~~~~~i~~i~~sp-------~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
.+...+ .+...+..+.|.. .+.+|++.-..+.|....+...........+... ....+..+
T Consensus 235 ~~~~~~~~~~P~~~~--~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~r~~~v 311 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAY--PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGG-FGGRPRDV 311 (331)
T ss_dssp TGSS-TTS---SEEE--TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTT-SSS-EEEE
T ss_pred cccCCCCcCccceee--cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcccc-CCCCceEE
Confidence 011111 2223455566553 3456666665678888887644333322222221 13367789
Q ss_pred EEcCCCCEEEEEeCCCcEE
Q 007757 526 NFSPDGRFVMSGDGEGKCW 544 (590)
Q Consensus 526 ~~spdg~~l~sgs~dg~I~ 544 (590)
++.|||.+.++-+.+|.|+
T Consensus 312 ~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTSEEEEEE-TTTTEE
T ss_pred EEcCCCeEEEEECCCCeEe
Confidence 9999999888888888875
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.08 E-value=1.8 Score=48.39 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=72.9
Q ss_pred cccEEEEcC--CCCEEEEEEcCCeEEEEEccCce---------------eecccccccCcccccceEEEEEc--CCCCEE
Q 007757 474 SMPSISLHP--NTNWLAAQSLDNQILIYSTRERF---------------QLNKKKRFAGHIVAGYACQVNFS--PDGRFV 534 (590)
Q Consensus 474 ~i~~i~~sp--~g~~l~s~s~dg~I~iwd~~~~~---------------~~~~~~~~~~~~~~~~v~~v~~s--pdg~~l 534 (590)
.|..|.+.. ....|++|..||.|.+|.+..-. .......+.-. ....++.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 344444432 45678999999999999763210 00000111111 24467789998 888999
Q ss_pred EEEeCCCcEEEEeCCC--CeEEEE-EecCCCCEEEEEEcCCC--CC---EEEEEeCCCcEEEeC
Q 007757 535 MSGDGEGKCWFWDWKS--CKVFRT-LKCHEGVCIGCEWHPLE--QS---KVATCGWDGLIKYWD 590 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t--~~~~~~-l~~h~~~V~~v~~sp~~--~~---~l~s~g~DG~I~iWD 590 (590)
|+++....|.||-... .+.... -..|...|-+|+|.+++ +. +|++++-.|.+.+|+
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 9999888888875433 221111 11255678899998754 22 788899999988874
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.01 E-value=3.4 Score=43.82 Aligned_cols=141 Identities=15% Similarity=0.201 Sum_probs=86.2
Q ss_pred cEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCC-------EEEEEeCCCcEEEEECCCCc-EEEEe--ec
Q 007757 400 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-------RFVTSSDDKSLRVWEFGIPV-VIKYI--SE 469 (590)
Q Consensus 400 ~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~-------~l~s~s~Dg~I~iwdl~~~~-~~~~~--~~ 469 (590)
-++..|.....++-.|+..|+.+.++..|..- -+.|.|... .-++|-.+..|.-.|.+... .+... ..
T Consensus 481 li~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred eEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh
Confidence 45666777788999999999999999877665 466776532 23344445556555654332 11111 11
Q ss_pred -CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 470 -PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 470 -~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.......+.. .....|+++++..|.|++||--...- ...+++. ...|..+..+.+|.+|++.+.. .|.+-|+
T Consensus 559 Y~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rA---KtalP~l--G~aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 559 YKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRA---KTALPGL--GDAIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred ccccccccccc-cccCceEEEecCCCceeeehhhcchh---hhcCccc--ccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 1111222222 22456999999999999999643211 1222222 4456778999999998877644 6777775
Q ss_pred C
Q 007757 549 K 549 (590)
Q Consensus 549 ~ 549 (590)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 3
No 437
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=14 Score=36.63 Aligned_cols=273 Identities=10% Similarity=0.087 Sum_probs=144.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEE-eccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc-
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ- 376 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~- 376 (590)
.+-+..++++ ++++..+..+.-++|.|+.....+... +..-.+--.++.. .|++...+..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 4456777776 557888888888999999544433322 1111233334444 58899888877777778876543
Q ss_pred --EEEEccCCCCc-eEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc---eEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 377 --VIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 377 --~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~---~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
+..++...... .-+.++ ++....+..|+.+.+.|+.... ++..+. ....+.++..+++--+++.. +
T Consensus 161 P~lagrya~~~~d~~~v~IS-----Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~ 232 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS-----GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--D 232 (370)
T ss_pred ceeeeeeccCCCCceeEEEe-----cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--c
Confidence 33333322221 222222 2567777889999999997653 222322 22367777777654343333 3
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcccEE-EEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSMPSI-SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i-~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
--+.+-|...+..+..+..-....+.++ .+.-.+++......+..+.+.|+.+.........+... ......+..
T Consensus 233 egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~--g~~a~gi~a-- 308 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA--GYQAAGIRA-- 308 (370)
T ss_pred cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC--CccccceEE--
Confidence 3466777777664444432222223332 23334667777776777777777654222111111100 001111222
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
-+.++..+..+ ...+-+....+......+....+.++..+- ..+.+.+..++|-+.||+
T Consensus 309 y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~-~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 309 YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSV-DTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEE-EeeEEEEeecCCCEEEEE
Confidence 34455555544 444555444333322222222233333333 234788888999999886
No 438
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.81 E-value=3.6 Score=45.71 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=72.7
Q ss_pred CceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEc--CCCCEEEEEEcCCeEEEEEccCceee
Q 007757 430 GAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH--PNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~s--p~g~~l~s~s~dg~I~iwd~~~~~~~ 507 (590)
....-+.-+.-++..++.+....+.|||.+.........-.....|..+.|. |+++.+++.+..+.|.+|.-......
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3444555555555555556667899999988875544433457789999885 67889999999999999864211100
Q ss_pred ------cccc--cccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 508 ------NKKK--RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 508 ------~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
..+. ....+ ....|....|.++|.+++.. ...+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~-T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSH-TPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecC-CCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 0111 11111 12346678899999766544 346788763
No 439
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.55 E-value=18 Score=37.18 Aligned_cols=236 Identities=14% Similarity=0.158 Sum_probs=112.5
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE---EEEcc---C--CCCceEEEEecCCCC-CcEEEEEEcC-------
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFS---T--GKIPYVVKLNPDDDK-QNILLAGMSD------- 408 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~---~~~~~---~--~~~~~~~~~~~~~~~-~~~lvsg~~d------- 408 (590)
.-+.|+|.|+|++|++ ...|.|++++ ..+.. +..+. . .....-+.++|.-.. +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5699999999 44443 22221 1 122345666664222 2333333321
Q ss_pred -CcEEEEECCCC-------c-eEEEEcc---cCCceeEEEEeCCCCEEEEEeCCCc-------------EEEEECCCCc-
Q 007757 409 -KKIVQWDMNTK-------E-ITQEYDQ---HLGAVNTITFVDSNRRFVTSSDDKS-------------LRVWEFGIPV- 462 (590)
Q Consensus 409 -g~I~vwDl~t~-------~-~~~~~~~---h~~~V~~i~~~p~~~~l~s~s~Dg~-------------I~iwdl~~~~- 462 (590)
..|.-|.+..+ + ++..+.. .......|.|.|++.++++.++.+. |.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24444444332 1 1112222 2234567999999977777765443 2222221100
Q ss_pred -----------EEEEeecCCCCcccEEEEcCC-CCEEEEE-EcCCeEEEEEccCceee----------------------
Q 007757 463 -----------VIKYISEPHMHSMPSISLHPN-TNWLAAQ-SLDNQILIYSTRERFQL---------------------- 507 (590)
Q Consensus 463 -----------~~~~~~~~~~~~i~~i~~sp~-g~~l~s~-s~dg~I~iwd~~~~~~~---------------------- 507 (590)
....+... ......++|+|. +.++++- +.++.=.|.-+..+...
T Consensus 161 ~dnP~~~~~~~~~~i~A~G-lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYG-LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeC-CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00000111 122457899998 5544432 22222222222211100
Q ss_pred ----cccccccCcccccceEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeEEEEE----ecCCCCEEEEEEcCC
Q 007757 508 ----NKKKRFAGHIVAGYACQVNFSP-------DGRFVMSGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIGCEWHPL 572 (590)
Q Consensus 508 ----~~~~~~~~~~~~~~v~~v~~sp-------dg~~l~sgs~dg~I~iwd~~t~~~~~~l----~~h~~~V~~v~~sp~ 572 (590)
.....+..| ..+..+.|-. .|.++++.-..+.|....+.....+... ......+..+++.|
T Consensus 240 ~~~~~P~~~~~~~---~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p- 315 (331)
T PF07995_consen 240 PGFVPPVFAYPPH---SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP- 315 (331)
T ss_dssp TTS---SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-
T ss_pred CCcCccceeecCc---cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-
Confidence 000011111 2344455543 4556766666778888888654332221 22344799999999
Q ss_pred CCCEEEEEeCCCcEE
Q 007757 573 EQSKVATCGWDGLIK 587 (590)
Q Consensus 573 ~~~~l~s~g~DG~I~ 587 (590)
++.++++-+.+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 677888877888874
No 440
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=18 Score=41.85 Aligned_cols=235 Identities=9% Similarity=0.049 Sum_probs=106.2
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEE--E------e--ccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEc
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMR--T------Y--MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~--~------~--~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~ 381 (590)
++.|..|+.+|.+.+|.+.+...... . + .-+..+|..+...+.-..+++- .|+.|.++++.+-+.....
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~~~~~ 104 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEPVPSG 104 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcccccccc
Confidence 78999999999999999854432111 0 0 0124667666666644444433 4678888887765542211
Q ss_pred cC--CCCceEEEEecCCCC-CcEEEEEEcCCcE--EEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007757 382 ST--GKIPYVVKLNPDDDK-QNILLAGMSDKKI--VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 382 ~~--~~~~~~~~~~~~~~~-~~~lvsg~~dg~I--~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
.. +....+....+...+ ..+.++......+ ..|+-+.+..+..--+-.....+++|. +..+.++-.+....+|
T Consensus 105 ~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~~~~~ii~ 182 (877)
T KOG2063|consen 105 TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLKKSYYIIN 182 (877)
T ss_pred cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeecceeEEEe
Confidence 11 111111111121111 1233333322222 234443333322221222222333332 2222222222222223
Q ss_pred ECCCCcEEE--EeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEE
Q 007757 457 EFGIPVVIK--YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 457 dl~~~~~~~--~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
.-.++.... .........-+.|+...++..|+.+ .|+...+-|............+... ...+. -+..|+
T Consensus 183 ~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~~~~l~ws~~-----P~~v~--~~~PYl 254 (877)
T KOG2063|consen 183 NTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQRGTLVWSEV-----PLSVV--VESPYL 254 (877)
T ss_pred cCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccCCCceEeccc-----chhhc--ccCceE
Confidence 222221111 1111113334556666666566665 6777777675442211111111110 00111 145577
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEe
Q 007757 535 MSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
++-+.. .|.||+..++.+++++.
T Consensus 255 Ia~~~~-~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 255 IALLDR-SVEIRSKLDGQLVQSIT 277 (877)
T ss_pred EEEccc-cEEEEeccCHHHhhccc
Confidence 666544 99999999998888873
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.53 E-value=0.8 Score=31.38 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=27.3
Q ss_pred CCeeEEEEcCCCC--CEEEEEeCCCcEEEEEcc
Q 007757 300 KGVSAIRFFPKYG--HLILSAGMDTKVKIWDVV 330 (590)
Q Consensus 300 ~~V~~l~fsp~~g--~~L~sgs~Dg~I~iWd~~ 330 (590)
+.|.+++|+|..+ .+|+.+-.-|.|.|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999998766 799999999999999994
No 442
>PLN02193 nitrile-specifier protein
Probab=91.47 E-value=24 Score=38.32 Aligned_cols=193 Identities=11% Similarity=0.094 Sum_probs=90.1
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCcEEEEccCCCCc----eEEEEecCCCCCcEEEEEEcC-----CcEEEEECC
Q 007757 354 DGTKFLTASYD-------KNIKYWDTETGQVIRTFSTGKIP----YVVKLNPDDDKQNILLAGMSD-----KKIVQWDMN 417 (590)
Q Consensus 354 dg~~l~s~s~D-------g~I~vWd~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~lvsg~~d-----g~I~vwDl~ 417 (590)
++.+++.|+.+ ..+.+||+.+.+-...-..+..+ ...+.... +..+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 44556666643 24778888876544321111111 11111111 22567777654 468889998
Q ss_pred CCceEEEEcc---c-CCceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEeec---CCCCcccEEEEcCCCC
Q 007757 418 TKEITQEYDQ---H-LGAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTN 485 (590)
Q Consensus 418 t~~~~~~~~~---h-~~~V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~~~~~~~~~---~~~~~i~~i~~sp~g~ 485 (590)
+.+-...-.. . ...-.++.. -+++.++.|+.++ .+..||+.+..-...-.. +....-..++.. +++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gk 330 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGK 330 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCc
Confidence 7643321111 0 111122222 2456677776543 466788766543221110 000111222222 566
Q ss_pred EEEEEEcC----CeEEEEEccCceeecccccccC-cccccceEEEEEcCCCCEEEEEeCC--------------CcEEEE
Q 007757 486 WLAAQSLD----NQILIYSTRERFQLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGE--------------GKCWFW 546 (590)
Q Consensus 486 ~l~s~s~d----g~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~d--------------g~I~iw 546 (590)
+++.++.+ +.+.+||+.+.. ......... .........+. -++++++.|+.. ..+.++
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEEEE
Confidence 77776655 458899987643 111111100 00011111222 256677777743 247888
Q ss_pred eCCCCeE
Q 007757 547 DWKSCKV 553 (590)
Q Consensus 547 d~~t~~~ 553 (590)
|..+.+-
T Consensus 408 D~~t~~W 414 (470)
T PLN02193 408 DTETLQW 414 (470)
T ss_pred EcCcCEE
Confidence 8876543
No 443
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.35 E-value=2.1 Score=45.21 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=62.0
Q ss_pred EEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCC-----------------CC
Q 007757 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD-----------------KQ 399 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 399 (590)
..+......+.+|+.+|.+++.++...=|.|.|+|+.++..++.++.-....|.-+..... ..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 3455566678999999999988887777999999999998888776544433322111111 11
Q ss_pred cEEEEEEcCCcEEEEECCCCceEEEEc
Q 007757 400 NILLAGMSDKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 400 ~~lvsg~~dg~I~vwDl~t~~~~~~~~ 426 (590)
.+++-.-..|.|-+|.+++|..+..+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 234445668899999999887766553
No 444
>PLN02153 epithiospecifier protein
Probab=91.30 E-value=20 Score=37.02 Aligned_cols=146 Identities=8% Similarity=0.036 Sum_probs=69.7
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEccC-----CCCceEEEEecCCCCCcEEEEEEcC-----------CcEE
Q 007757 354 DGTKFLTASYD-----KNIKYWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLAGMSD-----------KKIV 412 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lvsg~~d-----------g~I~ 412 (590)
++.+++.|+.+ ..+.+||+.+.+-...-.. ............ +..+++.|+.+ ..|.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEE
Confidence 56677777754 3577889887654332111 111111111221 22567777643 2477
Q ss_pred EEECCCCceEEEEccc-----CCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCcEEEEeec---CC
Q 007757 413 QWDMNTKEITQEYDQH-----LGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPVVIKYISE---PH 471 (590)
Q Consensus 413 vwDl~t~~~~~~~~~h-----~~~V~~i~~~p~~~~l~s~s~D-------------g~I~iwdl~~~~~~~~~~~---~~ 471 (590)
+||+.+.+-.. +... ...-.+++. -+++.++.++.+ ..|.+||+.+..-...-.. +.
T Consensus 163 ~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 163 AYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence 88988764322 1111 011112222 245666655432 4588888876654432111 11
Q ss_pred CCcccEEEEcCCCCEEEEEEcC--------------CeEEEEEccCc
Q 007757 472 MHSMPSISLHPNTNWLAAQSLD--------------NQILIYSTRER 504 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~l~s~s~d--------------g~I~iwd~~~~ 504 (590)
.....++ ...++++++.|+.. +.|..||+.+.
T Consensus 241 ~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 241 ARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred Ccceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 1111222 22246667776641 25778887653
No 445
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.09 E-value=21 Score=36.89 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=25.3
Q ss_pred cEEEEEEcC-----------CcEEEEECCCCceEEEEcccCCceeE--EEEeCCCCEEEEEeCC
Q 007757 400 NILLAGMSD-----------KKIVQWDMNTKEITQEYDQHLGAVNT--ITFVDSNRRFVTSSDD 450 (590)
Q Consensus 400 ~~lvsg~~d-----------g~I~vwDl~t~~~~~~~~~h~~~V~~--i~~~p~~~~l~s~s~D 450 (590)
.+.+.|+.+ ..+..||+.+.+-...-......... .+..-+++.++.|+.+
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 567777653 24777888776432221111111111 1112367777777754
No 446
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.75 E-value=23 Score=36.93 Aligned_cols=196 Identities=12% Similarity=0.196 Sum_probs=106.6
Q ss_pred EEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeC----CCCE--EEEEeC-C---CcEEEEEC
Q 007757 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD----SNRR--FVTSSD-D---KSLRVWEF 458 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p----~~~~--l~s~s~-D---g~I~iwdl 458 (590)
.+-.+|......+++....++-+.+||+.- +.++.+. .+.++.+.... .++. |+.++. + .+|++|.+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 455566666667889999999999999974 4555553 34555544421 2332 344442 2 46999987
Q ss_pred CC-CcEEEEeecC------CCCcccEEEEc--C-CCC-EEEEEEcCCeEEEEEccCc---e-eecccccccCcccccceE
Q 007757 459 GI-PVVIKYISEP------HMHSMPSISLH--P-NTN-WLAAQSLDNQILIYSTRER---F-QLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 459 ~~-~~~~~~~~~~------~~~~i~~i~~s--p-~g~-~l~s~s~dg~I~iwd~~~~---~-~~~~~~~~~~~~~~~~v~ 523 (590)
.. ...+..+..+ ....+..+|+. + +|. ++++...+|.+..|-+... . .....+.|.. ...+-
T Consensus 135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~E 211 (381)
T PF02333_consen 135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPE 211 (381)
T ss_dssp ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EE
T ss_pred cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcce
Confidence 53 2234443221 12235567763 3 344 6677788898888877421 1 1111222222 34566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEEEEec--CCCCEEEEEEcC--CCCC-EEEEEeCCCcEEEeC
Q 007757 524 QVNFSPDGRFVMSGDGEGKCWFWDWKS-----CKVFRTLKC--HEGVCIGCEWHP--LEQS-KVATCGWDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t-----~~~~~~l~~--h~~~V~~v~~sp--~~~~-~l~s~g~DG~I~iWD 590 (590)
.+.......+|+.|-.+--|+-|+... +..+....+ ....|-.+++-. ++.. +|+|.-.+++..|||
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 677888888999999998888888752 233333322 234677777643 2333 455555677788775
No 447
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.68 E-value=17 Score=37.42 Aligned_cols=149 Identities=14% Similarity=0.202 Sum_probs=86.7
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCc------EEEEECCCC----cEEE-----EeecCCCC-------cccEEEEcCCCC
Q 007757 428 HLGAVNTITFVDSNRRFVTSSDDKS------LRVWEFGIP----VVIK-----YISEPHMH-------SMPSISLHPNTN 485 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~Dg~------I~iwdl~~~----~~~~-----~~~~~~~~-------~i~~i~~sp~g~ 485 (590)
..+.+..|.+.+++..+++.+++|. ++.+.+... ..+. .+..+... -.-+|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4467888999977778888888888 766665441 1111 11111111 334788877888
Q ss_pred EEEEEEcC------CeEEEEEccCceeeccc---ccc-------cCcccccceEEEEEcCCCCEEEEEeC-----CC--c
Q 007757 486 WLAAQSLD------NQILIYSTRERFQLNKK---KRF-------AGHIVAGYACQVNFSPDGRFVMSGDG-----EG--K 542 (590)
Q Consensus 486 ~l~s~s~d------g~I~iwd~~~~~~~~~~---~~~-------~~~~~~~~v~~v~~spdg~~l~sgs~-----dg--~ 542 (590)
++++.-.+ ..|+.++.. +.....+ ..+ .+.......-.++++|+|+.|+++.. |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877667 788888876 3222222 111 22333455778999999996665532 22 1
Q ss_pred -------EEE--EeCCC-CeEEEE----Eec-----CCCCEEEEEEcCCCCCEEE
Q 007757 543 -------CWF--WDWKS-CKVFRT----LKC-----HEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 543 -------I~i--wd~~t-~~~~~~----l~~-----h~~~V~~v~~sp~~~~~l~ 578 (590)
++| ||..+ +..... +.. ....|..+.+.+ ++.+|+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLv 230 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLV 230 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEE
Confidence 444 55554 322222 221 245688898888 454544
No 448
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.61 E-value=24 Score=36.86 Aligned_cols=144 Identities=13% Similarity=0.194 Sum_probs=76.7
Q ss_pred CCeeEEEEcCCCCCEEEEEe-----------CCC-cEEEEEccC-CCee--EEEeccCCCceeEEEEecCCCEEEEEeCC
Q 007757 300 KGVSAIRFFPKYGHLILSAG-----------MDT-KVKIWDVVN-SGKC--MRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs-----------~Dg-~I~iWd~~~-~~~~--~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
.....|+|.++ |+++++-. ..+ .|.+++-.+ +++. ...+.......+.|+|.++| +++ ++..
T Consensus 14 ~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 34678899998 88777653 223 677765422 2332 23444444556889999988 444 4444
Q ss_pred CeEEEEECCCC-----c--E-EEEccC-----CCCceEEEEecCCCCCcEEEEEEc-------------------CCcEE
Q 007757 365 KNIKYWDTETG-----Q--V-IRTFST-----GKIPYVVKLNPDDDKQNILLAGMS-------------------DKKIV 412 (590)
Q Consensus 365 g~I~vWd~~t~-----~--~-~~~~~~-----~~~~~~~~~~~~~~~~~~lvsg~~-------------------dg~I~ 412 (590)
..+++.|.... + . +..+.. .+....+.+.+++ .+.++-+. .|.|.
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG---~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG---WLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC---CEEEecccCCCceeccCCCccCcccccCceEE
Confidence 43344455321 1 1 222322 2234455565543 33333221 14566
Q ss_pred EEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 413 vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
.++..+++....-.+ ......++|+++++++++-..+
T Consensus 168 r~~pdg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 667665543322222 3445789999999887765433
No 449
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.55 E-value=24 Score=36.80 Aligned_cols=193 Identities=12% Similarity=0.082 Sum_probs=103.4
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccC--CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEE
Q 007757 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 390 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h--~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~ 390 (590)
..++.+..+|.|.-.|. ..+..+.....- ...+..-.+..+|+ |+.++.++.+..+|..+|+.+..+..... ...
T Consensus 69 g~v~~~~~~G~i~A~d~-~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNP-DTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS-PYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeC-CCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCC-eEE
Confidence 44555577887777777 455544332221 12333333333665 77888889999999999999988877661 111
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC---ceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEE
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIK 465 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~---~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~~ 465 (590)
.-.+. .....++.++.++.+...|..+++....+..... .+..--.. ....++.+.. ++.+.-.|...+...-
T Consensus 146 ~~~~v-~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 146 ASPPV-VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred ecCcE-EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEee
Confidence 11111 1113455555789999999999988777543221 11111111 2234444444 5556666666665554
Q ss_pred Eee----cCCCC-----cccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 466 YIS----EPHMH-----SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 466 ~~~----~~~~~-----~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
... ..... .+..-.+. .+.-++.++.++.+...+..++..+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred eeeeecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 421 11100 00000111 12234566677778888887776554433
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=8.7 Score=42.79 Aligned_cols=178 Identities=11% Similarity=0.153 Sum_probs=92.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEe----ccCCCceeEEEEecCCCEEEEEeCCCeEEEE-ECC
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY----MGHSKAVRDISFCNDGTKFLTASYDKNIKYW-DTE 373 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~----~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW-d~~ 373 (590)
.+.+-.+-|+.+ +.|++-..+|+++||++ .+..+..+ ......|..+.|..+|-.+++.+ |.+.+- +.+
T Consensus 83 ~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~--~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~--g~v~~i~~~~ 156 (829)
T KOG2280|consen 83 HGELIGMGWSDD--EELICVQKDGTVHVYGL--LGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS--GQVILINGVE 156 (829)
T ss_pred CCCeeeecccCC--ceEEEEeccceEEEeec--chhhhcccccccccccCceeEEEEecCceEEEecC--CcEEEEcCCC
Confidence 347888999977 67778899999999998 34443332 12233455556655665444443 444443 333
Q ss_pred CCcEEEEccC---CCCc-eEEEEecCCCCCcEEEEEE-cCCcEEEEECCCCc-eEEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 374 TGQVIRTFST---GKIP-YVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 374 t~~~~~~~~~---~~~~-~~~~~~~~~~~~~~lvsg~-~dg~I~vwDl~t~~-~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
.. .++.+.. .... .+..+...+....+++-.. ..+ ..++...... ....+....+.+..+..+|+.++|+.-
T Consensus 157 ~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLy 234 (829)
T KOG2280|consen 157 EP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALY 234 (829)
T ss_pred cc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEE
Confidence 21 2222211 1111 2333333222212222111 111 1111111111 111222223567888999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCC
Q 007757 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT 484 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g 484 (590)
...|.|.+-+....+....+..+...+...++|..+.
T Consensus 235 t~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 235 TETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 9999999888876666555543333333456665433
No 451
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=90.39 E-value=33 Score=40.87 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=42.7
Q ss_pred cCCCCCeeEEEEcCC--CCC----EEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEe---cC-CCEEEEEeCCC
Q 007757 296 SGHTKGVSAIRFFPK--YGH----LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFC---ND-GTKFLTASYDK 365 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~--~g~----~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs---pd-g~~l~s~s~Dg 365 (590)
.||...|.|..+.-. +.. ..+..+-||.+.|=|. ..++.+.......+-+... +. .-++|..--||
T Consensus 344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf----NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg 419 (1899)
T KOG4659|consen 344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF----NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG 419 (1899)
T ss_pred CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc----hheeeecCCCceEEEEEecCCCccceeEEEecCcCc
Confidence 468888777765421 111 2345677888888665 2344433222222222222 11 12455555677
Q ss_pred eEEEEECCCCcEEEE
Q 007757 366 NIKYWDTETGQVIRT 380 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~ 380 (590)
++.|=|..+.+..+.
T Consensus 420 tlyvSdp~s~qv~rv 434 (1899)
T KOG4659|consen 420 TLYVSDPLSKQVWRV 434 (1899)
T ss_pred eEEecCCCcceEEEe
Confidence 887777776665544
No 452
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.24 E-value=27 Score=36.90 Aligned_cols=151 Identities=12% Similarity=0.099 Sum_probs=81.8
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec--c
Q 007757 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--K 509 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~--~ 509 (590)
...+..++++.+++.+..-..++-||-.... -..+..+....+.++.+.+++..++++ ..|.+.. ....+.... .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~-W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY-WQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc-eEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 3445566777666666544333334432211 122333456678899999998877765 5565443 222221100 1
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe---cCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 007757 510 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~~~l~s~g~DG~I 586 (590)
+....-......+..+.|.+++..+++| ..|.+.... ..|+...... .-......+.|.+ +. .....|.+|.|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~-~g~~~G~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DK-KGFVLGNDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CC-ceEEEeCCcEE
Confidence 1111111112346778899888776666 566665553 5555544433 2234678999876 33 45556678888
Q ss_pred EEe
Q 007757 587 KYW 589 (590)
Q Consensus 587 ~iW 589 (590)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 765
No 453
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.12 E-value=24 Score=36.04 Aligned_cols=106 Identities=8% Similarity=-0.002 Sum_probs=53.2
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEE---EEcc-CCC--CceEEEEecCCCCCcEEEEEEc-----CCcEEEEECC
Q 007757 354 DGTKFLTASYD-----KNIKYWDTETGQVI---RTFS-TGK--IPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMN 417 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~---~~~~-~~~--~~~~~~~~~~~~~~~~lvsg~~-----dg~I~vwDl~ 417 (590)
++.+++.|+.+ ..+..+|+.+.+.. ..+. ... ........ +..+++.|+. ...+..||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~----~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK----DGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE----CCEEEEEeCcCCCccCceEEEEcCC
Confidence 55666777754 35667777766531 1211 111 11122221 2256666664 2468889988
Q ss_pred CCceEEEEccc-CCceeEEEEeCCCCEEEEEeCCCc----EEEEECCCCcE
Q 007757 418 TKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDKS----LRVWEFGIPVV 463 (590)
Q Consensus 418 t~~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~Dg~----I~iwdl~~~~~ 463 (590)
+.+-...-... .......+..-+++.++.|+.++. +.+||..+..-
T Consensus 148 ~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 148 TQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 76532211111 111222223345677788876543 56788776543
No 454
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.07 E-value=32 Score=37.40 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=73.6
Q ss_pred CcEEEEECCCCceEEEEccc-CCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEeecCCCCcccEEEEcCCCCE
Q 007757 409 KKIVQWDMNTKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
|.+.+-+-.++..+.....- ...|+.+++...+ .+-.++...-+..|+..+ ............+.|..|.-.|+++
T Consensus 354 g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns- 431 (671)
T COG3292 354 GELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS- 431 (671)
T ss_pred ceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-
Confidence 33444444555555443222 2456666666644 555566554466677665 3333333344566788888888888
Q ss_pred EEEEEcCCeEEEEEccCceeecccccccCc-ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 487 LAAQSLDNQILIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 487 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
|..|+.+|.++.- ......... ..+..+ ....++..+.+.|+|++-+..+ +| |..|+.+..
T Consensus 432 LWIGTs~Glvk~~-pe~~~v~n~-ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~~ 493 (671)
T COG3292 432 LWIGTSGGLVKRD-PESGRVLNL-LNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQRR 493 (671)
T ss_pred EEEeccCCeEecC-ccccchhcc-cccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccccc
Confidence 8888888866542 222111111 111111 1234567788999998643332 32 577765443
No 455
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=18 Score=34.22 Aligned_cols=171 Identities=15% Similarity=0.203 Sum_probs=92.2
Q ss_pred CCEEEEEeCC--CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEE-EeCCCeEEEEECCCCcEEEEccCCCCce
Q 007757 312 GHLILSAGMD--TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKNIKYWDTETGQVIRTFSTGKIPY 388 (590)
Q Consensus 312 g~~L~sgs~D--g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg~I~vWd~~t~~~~~~~~~~~~~~ 388 (590)
++++.+.+.- ..|++||+ ..++.+..-.-....+..=-...-|..|.. .-.+|.-.++|..+.+++..+.-....+
T Consensus 56 g~i~esTG~yg~S~ir~~~L-~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDL-TTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEec-cCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 6788777654 46999999 566655543222111211111112333332 2347888899999999988887766665
Q ss_pred EEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE----cc-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 007757 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY----DQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV 463 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~----~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~ 463 (590)
.++.. +. + |+.+.....++.-|..+-....++ .+ .-..++.+.|. +|...+-.-.+..|...+..+++.
T Consensus 135 gLt~d--~~--~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 GLTSD--DK--N-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred eeecC--Cc--c-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 55432 22 2 666666677887777654433322 21 11234445554 344444333334444445555544
Q ss_pred EEEee-----------cCCCCcccEEEEcCCCCEEEE
Q 007757 464 IKYIS-----------EPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 464 ~~~~~-----------~~~~~~i~~i~~sp~g~~l~s 489 (590)
...+. ..+..-...|++.|++..|+.
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 44332 123345677888888744443
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=11 Score=40.41 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=55.9
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 424 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~ 424 (590)
.|..+..++.|..++-++.+|.+.++=.+....-..+..++....+...+-+. .|++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~---~~ftss------------------ 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE---RFFTSS------------------ 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc---eeeccC------------------
Confidence 46677888899988888888876665433222223333333333222222211 122111
Q ss_pred EcccCCceeEEEEeCCC---CEEEEEeCCCcEEEEECCCCcEEE
Q 007757 425 YDQHLGAVNTITFVDSN---RRFVTSSDDKSLRVWEFGIPVVIK 465 (590)
Q Consensus 425 ~~~h~~~V~~i~~~p~~---~~l~s~s~Dg~I~iwdl~~~~~~~ 465 (590)
..-.+....|+|+. ..|+.-+.|..|++||+.....+.
T Consensus 164 ---~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 164 ---TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred ---CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 11234456777764 577888889999999998766553
No 457
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.31 E-value=8.4 Score=37.62 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=80.5
Q ss_pred EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC---CcEEEEECCC---CcEEEEee--cCCCCcccEEEEcC
Q 007757 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD---KSLRVWEFGI---PVVIKYIS--EPHMHSMPSISLHP 482 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D---g~I~iwdl~~---~~~~~~~~--~~~~~~i~~i~~sp 482 (590)
-.+||+.+++....--...-.+.+-.+.++|++|++|+.. ..+++++... ........ ......-.++..-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578998876543222223334445677899999988752 3577777543 11111110 12233455666778
Q ss_pred CCCEEEEEEcCCe-EEEEEccCc-e---eecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 007757 483 NTNWLAAQSLDNQ-ILIYSTRER-F---QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 483 ~g~~l~s~s~dg~-I~iwd~~~~-~---~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
+|+.|+.|+.... ..+|..... . .+..............--.+-..|+|++++.+..+ -.|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 9999999887743 344433211 0 01001101001111112236778999999988765 456688888777766
Q ss_pred ec
Q 007757 558 KC 559 (590)
Q Consensus 558 ~~ 559 (590)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 53
No 458
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.17 E-value=22 Score=34.24 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=94.0
Q ss_pred EEEEEeCCCcEEEEEcc-CCCeeEEEecc-----CCCceeEEEEecCCCEEEEEeCC---------CeEEEEECCCCcEE
Q 007757 314 LILSAGMDTKVKIWDVV-NSGKCMRTYMG-----HSKAVRDISFCNDGTKFLTASYD---------KNIKYWDTETGQVI 378 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~-~~~~~~~~~~~-----h~~~V~~l~fspdg~~l~s~s~D---------g~I~vWd~~t~~~~ 378 (590)
+.+.++..-.|--||.. ..-...+++.. .....++-..+|+|++++-.-.| |.++.|-.. ++..
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~ 151 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVE 151 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCce
Confidence 34444444445556632 12233344221 23456677788999985433222 445555332 2222
Q ss_pred EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEE--CCCCce-----EEEEcc----cCCceeEEEEeCCCCEEEEE
Q 007757 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD--MNTKEI-----TQEYDQ----HLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwD--l~t~~~-----~~~~~~----h~~~V~~i~~~p~~~~l~s~ 447 (590)
..+..-.....+.|. .+...+.++-+.+-.|.-|| ..+|.+ +..++. ..-.--.+++..+|+.++++
T Consensus 152 ~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 152 LIWNCVGISNGLAWD--SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred eeehhccCCcccccc--ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 222222223334444 44446677777788887777 555532 222221 11112345556688899999
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC
Q 007757 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp 482 (590)
-..++|...|..+++.+..+..+ ...|++++|--
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 99999999999999999998875 66889998853
No 459
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.05 E-value=7.2 Score=40.88 Aligned_cols=141 Identities=13% Similarity=0.056 Sum_probs=82.1
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc
Q 007757 433 NTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 510 (590)
+.+-|...++.|++. ..|.+.-|-...+. ....+.....++|.++.|++|.+.||+.-.++.|.+++........ .
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-~ 103 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-E 103 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-H
Confidence 445555445444443 34555666554322 2222333456799999999999999999999999999874322111 1
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEecCCCCEEEEEEcCCCCCEEE
Q 007757 511 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
...........|...+|+.. .-++.....| +-+|-... .+.++..+.|.-.|.=..|.+ +...+.
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~L 169 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVIL 169 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEe
Confidence 11111222334667788766 4455554444 55555433 333555566777787788888 454433
No 460
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=88.94 E-value=40 Score=36.94 Aligned_cols=253 Identities=13% Similarity=0.096 Sum_probs=117.1
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCe-eEEEeccC-CCceeEEEEecCC-CEEEEEeC--CCeEEEEECCCCcEEEEccCC
Q 007757 310 KYGHLILSAGMDTKVKIWDVVNSGK-CMRTYMGH-SKAVRDISFCNDG-TKFLTASY--DKNIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 310 ~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~~h-~~~V~~l~fspdg-~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~~ 384 (590)
..+..++.+..+|.+..-.+...+. ......+. ....+++++..+| .+|+.||. |+.+.-|....-+++..+..-
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~ 299 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNW 299 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCc
Confidence 3378899999999999888844442 22333333 5566777777665 36666665 455666665556677777777
Q ss_pred CCceEEEEecCCC-CCc------EEEEEE---cCCcEEEEECCCCce--EEEEcccCCceeEEEEeCC----CCEEEEEe
Q 007757 385 KIPYVVKLNPDDD-KQN------ILLAGM---SDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDS----NRRFVTSS 448 (590)
Q Consensus 385 ~~~~~~~~~~~~~-~~~------~lvsg~---~dg~I~vwDl~t~~~--~~~~~~h~~~V~~i~~~p~----~~~l~s~s 448 (590)
.+..-+++..... ... .+++++ .+|.++++.-.-+-. ........+ +..+-..+. +.+|+.+.
T Consensus 300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp -SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEE
T ss_pred CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEc
Confidence 7776666654321 121 444443 467787763221111 111111222 433333322 45666666
Q ss_pred CCCcEEEEECC---CCcEEEEeec-CCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccccCcccccceE
Q 007757 449 DDKSLRVWEFG---IPVVIKYISE-PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 449 ~Dg~I~iwdl~---~~~~~~~~~~-~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
.+.+ +++.+. ....+..+.. .-......+....- +..++=. ....|++.+.............. ...|.
T Consensus 379 ~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQV-t~~~i~l~~~~~~~~~~~w~~~~----~~~I~ 452 (504)
T PF10433_consen 379 PNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQV-TPKGIRLIDLEDGKLTQEWKPPA----GSIIV 452 (504)
T ss_dssp SSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEE-ESSEEEEEESSSTSEEEEEE-TT----S---S
T ss_pred CCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEE-ecCeEEEEECCCCeEEEEEeCCC----CCeEE
Confidence 5544 455553 2333322211 11111111111111 2222222 23457777765543332211111 22233
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-c----CCCCEEEEEEcC
Q 007757 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-C----HEGVCIGCEWHP 571 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-~----h~~~V~~v~~sp 571 (590)
..+. .+.+++.+..++.+..+.+.......... . ....|.|+...|
T Consensus 453 ~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 453 AASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 3333 44677777778889999887776643332 1 356788887766
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.87 E-value=5.9 Score=46.78 Aligned_cols=176 Identities=16% Similarity=0.275 Sum_probs=97.0
Q ss_pred cCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEe--------cCCCE
Q 007757 286 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFC--------NDGTK 357 (590)
Q Consensus 286 ~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs--------pdg~~ 357 (590)
-+|..++..+. |...-+.+-++|.=+..-+ +.|..+.+|+. +++.....+.+-...|..|..- |.=++
T Consensus 66 ~IP~el~eq~~-~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny-~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iqh 141 (1311)
T KOG1900|consen 66 NIPDELLEQFS-NIECKTDMGIFPEIGRAWI--TIDNNLFLWNY-ESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQH 141 (1311)
T ss_pred cCCHHHHHHhc-CcceeeeeccchhhcceEE--EeCCeEEEEEc-CCCCccccccchhhhheeeeeecCCCCcchhhhhe
Confidence 46777777776 6666667777887454444 35788999999 4556666676666666666532 22223
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEE
Q 007757 358 FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF 437 (590)
Q Consensus 358 l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~ 437 (590)
++..+.--.|.++-+.-. ........+.++ ..+......|+||..
T Consensus 142 lLvvaT~~ei~ilgV~~~------------------~~~~~~~~f~~~-----------------~~i~~dg~~V~~I~~ 186 (1311)
T KOG1900|consen 142 LLVVATPVEIVILGVSFD------------------EFTGELSIFNTS-----------------FKISVDGVSVNCITY 186 (1311)
T ss_pred eEEecccceEEEEEEEec------------------cccCcccccccc-----------------eeeecCCceEEEEEe
Confidence 333332233333322100 000000011111 112223345666666
Q ss_pred eCCCCEEEEEeCCCcEEEEECC----CC---c-E----------------EEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007757 438 VDSNRRFVTSSDDKSLRVWEFG----IP---V-V----------------IKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~----~~---~-~----------------~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d 493 (590)
..+|+.|++|-++ .+|.+- .+ . + +..+...+..+|..+++....+.+.+-+..
T Consensus 187 t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek 263 (1311)
T KOG1900|consen 187 TENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEK 263 (1311)
T ss_pred ccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccC
Confidence 6666655555443 334331 00 0 0 111112356689999999989999999999
Q ss_pred CeEEEEEccC
Q 007757 494 NQILIYSTRE 503 (590)
Q Consensus 494 g~I~iwd~~~ 503 (590)
|.|.+|++..
T Consensus 264 ~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 264 GTVSAYDIGG 273 (1311)
T ss_pred ceEEEEEccC
Confidence 9999999875
No 462
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.03 E-value=34 Score=39.84 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=65.7
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEe--ccCCCceeEEEEecCC------CEEEEEeCCCeEEEEECCCCcEEEEccC-
Q 007757 313 HLILSAGMDTKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCNDG------TKFLTASYDKNIKYWDTETGQVIRTFST- 383 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fspdg------~~l~s~s~Dg~I~vWd~~t~~~~~~~~~- 383 (590)
..++.+-..|.+.-+....++++.... ..-...|.|+++.+++ ++++.++.|+.+++..+.-..++..+..
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 355555555665555553344443332 2235678899998754 5799999999999999987777777654
Q ss_pred --CCCceEEEEecCCCC------CcEEEEEEcCCcEEEE--ECCCCc
Q 007757 384 --GKIPYVVKLNPDDDK------QNILLAGMSDKKIVQW--DMNTKE 420 (590)
Q Consensus 384 --~~~~~~~~~~~~~~~------~~~lvsg~~dg~I~vw--Dl~t~~ 420 (590)
+..+..+++...... +-++.+|-.+|.+.-+ |.-+|.
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~ 676 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQ 676 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccc
Confidence 233333333332221 3467777777776544 334453
No 463
>PLN02153 epithiospecifier protein
Probab=87.87 E-value=36 Score=35.10 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=32.7
Q ss_pred cEEEEEEcC-----CcEEEEECCCCceEE--EEcc---cCCceeEEEEeCCCCEEEEEeCC-----------CcEEEEEC
Q 007757 400 NILLAGMSD-----KKIVQWDMNTKEITQ--EYDQ---HLGAVNTITFVDSNRRFVTSSDD-----------KSLRVWEF 458 (590)
Q Consensus 400 ~~lvsg~~d-----g~I~vwDl~t~~~~~--~~~~---h~~~V~~i~~~p~~~~l~s~s~D-----------g~I~iwdl 458 (590)
.+++.|+.+ ..+.+||+.+.+-.. .+.. ...........-+++.++.|+.+ ..|.+||.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~ 166 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence 567777643 357889988764322 1110 11111112222356667777653 24777887
Q ss_pred CCCc
Q 007757 459 GIPV 462 (590)
Q Consensus 459 ~~~~ 462 (590)
.+..
T Consensus 167 ~~~~ 170 (341)
T PLN02153 167 ADGK 170 (341)
T ss_pred CCCe
Confidence 7654
No 464
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.67 E-value=2.1 Score=29.41 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.7
Q ss_pred CceeEEEEeCCCC---EEEEEeCCCcEEEEECCCC
Q 007757 430 GAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 430 ~~V~~i~~~p~~~---~l~s~s~Dg~I~iwdl~~~ 461 (590)
++|.++.|+|.+. +|+.+-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 5789999997544 8888888899999999853
No 465
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.46 E-value=26 Score=40.67 Aligned_cols=130 Identities=14% Similarity=0.208 Sum_probs=80.6
Q ss_pred CCcceeEEecCC---CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC----CCeeEEEeccCCCce----------eEE
Q 007757 287 IPKRLVHTWSGH---TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN----SGKCMRTYMGHSKAV----------RDI 349 (590)
Q Consensus 287 ~p~~~v~~l~gH---~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~----~~~~~~~~~~h~~~V----------~~l 349 (590)
+...++.++..+ ..+...++|+|.....||.....|.-.||++.. ....+.....+.+.| ..|
T Consensus 130 i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI 209 (765)
T PF10214_consen 130 IDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRI 209 (765)
T ss_pred cccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceee
Confidence 444555566533 346889999998888999999999999999921 111222222222323 378
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCcEEE-EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC
Q 007757 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 350 ~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t 418 (590)
.|.++-+.|+.++. ..+.++|+++..... .........++.+...+.+...++.-. ...|...++..
T Consensus 210 ~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 89888888888875 688999999876644 233333344444444443223333332 36777778776
No 466
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.02 E-value=33 Score=33.79 Aligned_cols=152 Identities=11% Similarity=0.117 Sum_probs=82.2
Q ss_pred ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEE-CCCCcE-E
Q 007757 387 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE-FGIPVV-I 464 (590)
Q Consensus 387 ~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd-l~~~~~-~ 464 (590)
.....+++++. .+.++...++.-.+|-...+....... ....+..-.|.+++...+....+...+++. ...+.. .
T Consensus 26 ~~s~AvS~dg~--~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 26 VTSPAVSPDGS--RVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred ccceEECCCCC--eEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 44555666543 333433233333333333333222221 233778889999987777766666667663 222222 1
Q ss_pred EEeecCCCC-cccEEEEcCCCCEEEEEEc---CCeEEEEEccCce-----eecccccccCcccccceEEEEEcCCCCEEE
Q 007757 465 KYISEPHMH-SMPSISLHPNTNWLAAQSL---DNQILIYSTRERF-----QLNKKKRFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 465 ~~~~~~~~~-~i~~i~~sp~g~~l~s~s~---dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
..+...... .|..+.++|+|..++.... ++.|.+--+.... .+...... .......+..+.|.+++.+++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~-~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV-APPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe-cccccCcceeeeecCCCEEEE
Confidence 222222222 8999999999998887763 4677776543111 11000111 111134677899999999888
Q ss_pred EEeCCCc
Q 007757 536 SGDGEGK 542 (590)
Q Consensus 536 sgs~dg~ 542 (590)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7765443
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.91 E-value=0.13 Score=53.64 Aligned_cols=149 Identities=10% Similarity=0.111 Sum_probs=100.7
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEE-EEEcCCeEEEEEccCcee
Q 007757 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSLDNQILIYSTRERFQ 506 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-s~s~dg~I~iwd~~~~~~ 506 (590)
+........|-+.+..++.++.+..|..||-... .+... ........++|.-++..++ .+-..+.+.+||+.+...
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 3334445667777777888888888999985333 22222 2334456677877776544 455678999999976432
Q ss_pred ecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 007757 507 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 586 (590)
.. ..+.+.... . -+.|++.+..++.|...|.+.|++..+.+.+...-.|...+++++|.+ + .+++.++.|..+
T Consensus 110 qq--LE~gg~~s~-s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l-E-d~vil~dcd~~L 182 (615)
T KOG2247|consen 110 QQ--LESGGTSSK-S--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL-E-DYVILCDCDNTL 182 (615)
T ss_pred HH--HhccCcchH-H--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc-c-ceeeecCcHHHH
Confidence 21 112222111 1 178999999999999999999999888877766656888999999998 3 367777766543
No 468
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.88 E-value=43 Score=35.05 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=24.9
Q ss_pred cEEEEEEcC-----------CcEEEEECCCCceEEEEcccCCce--eEEEEeCCCCEEEEEeCC
Q 007757 400 NILLAGMSD-----------KKIVQWDMNTKEITQEYDQHLGAV--NTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 400 ~~lvsg~~d-----------g~I~vwDl~t~~~~~~~~~h~~~V--~~i~~~p~~~~l~s~s~D 450 (590)
.+++.|+.. ..+..||..+.+-...-....... .+....-+++.++.|+.+
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566666643 247788887764322111001111 112221467777777754
No 469
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.59 E-value=3.8 Score=39.49 Aligned_cols=72 Identities=8% Similarity=0.120 Sum_probs=50.0
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEccCceeeccccc----ccC-----cccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR----FAG-----HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 478 i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~----~~~-----~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
+.+..++.+|++.+.+|.+++||+.+......... +.. ......|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 34556789999999999999999988665433211 110 02345677888888888776654 678899986
Q ss_pred CC
Q 007757 549 KS 550 (590)
Q Consensus 549 ~t 550 (590)
.-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 43
No 470
>PLN02193 nitrile-specifier protein
Probab=86.51 E-value=53 Score=35.66 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=72.9
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEccC---CCCceEEEEecCCCCCcEEEEEEcCC-----cEEEEECCCCc
Q 007757 354 DGTKFLTASYD-----KNIKYWDTETGQVIRTFST---GKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKE 420 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~vwDl~t~~ 420 (590)
++.+++.|+.+ ..+.++|+.+.+....... ............ +..+++.|+.++ .+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 55666777655 3588889887655432221 111111111111 235677776543 46778887764
Q ss_pred eEEEEc-----ccCCceeEEEEeCCCCEEEEEeCC----CcEEEEECCCCcEEEEeec---CCCCcccEEEEcCCCCEEE
Q 007757 421 ITQEYD-----QHLGAVNTITFVDSNRRFVTSSDD----KSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 421 ~~~~~~-----~h~~~V~~i~~~p~~~~l~s~s~D----g~I~iwdl~~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~ 488 (590)
-...-. ..... .++... +++.++.++.+ ..+.+||+.+..-...... +......+++ .-++++++
T Consensus 306 W~~~~~~~~~~~~R~~-~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv 382 (470)
T PLN02193 306 WFHCSTPGDSFSIRGG-AGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVI 382 (470)
T ss_pred EEeCCCCCCCCCCCCC-cEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEE
Confidence 322110 00111 122222 56677777655 4588999877654332211 1111112222 22566666
Q ss_pred EEEcC--------------CeEEEEEccCc
Q 007757 489 AQSLD--------------NQILIYSTRER 504 (590)
Q Consensus 489 s~s~d--------------g~I~iwd~~~~ 504 (590)
.|+.. +.+.+||+.+.
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcC
Confidence 66642 24778887654
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.46 E-value=54 Score=35.70 Aligned_cols=151 Identities=16% Similarity=0.099 Sum_probs=74.3
Q ss_pred cCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCC--CcccEEEEcCCC
Q 007757 407 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM--HSMPSISLHPNT 484 (590)
Q Consensus 407 ~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~--~~i~~i~~sp~g 484 (590)
..+.+.++|.. |.+...+.........+...++|.+++..+ ..++.+|+- ++.+.....+.. ..=..+...|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 45667777754 555555544333333367778887776655 778888885 334433332221 113456778899
Q ss_pred CEEEEEEc--------------CC---------eEEEEEccCceeeccc-----------ccccCcccccceEEEEEcC-
Q 007757 485 NWLAAQSL--------------DN---------QILIYSTRERFQLNKK-----------KRFAGHIVAGYACQVNFSP- 529 (590)
Q Consensus 485 ~~l~s~s~--------------dg---------~I~iwd~~~~~~~~~~-----------~~~~~~~~~~~v~~v~~sp- 529 (590)
++|+.+.. |. .|..|++..-...... ........-..+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 98888772 11 2334544332211111 0000111112367899988
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
++.+|+|+-.-..|...|.++++....+-.|.
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 66666666666689999999999988887654
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.37 E-value=13 Score=39.14 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=85.7
Q ss_pred EcCCCCCEEEEEeCCCcEEEEEccC--CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEcc--
Q 007757 307 FFPKYGHLILSAGMDTKVKIWDVVN--SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-- 382 (590)
Q Consensus 307 fsp~~g~~L~sgs~Dg~I~iWd~~~--~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~-- 382 (590)
|+.| .+.++.|-..|.+.=|-+.. +..++..-....++|.++.|++|.+.|++--.++.|.+++....+......
T Consensus 29 FfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ 107 (657)
T KOG2377|consen 29 FFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE 107 (657)
T ss_pred eecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence 4444 33333344445566666532 223344444566799999999999999999999999999884433322221
Q ss_pred C-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-CceEEEEcccCCceeEEEEeCCCCEEEEEe--CCCcEEEEEC
Q 007757 383 T-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSS--DDKSLRVWEF 458 (590)
Q Consensus 383 ~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s--~Dg~I~iwdl 458 (590)
+ .+...+..|.|.+. .-++.-.. ..+-+|-... .+.++..+.|.-.|+-..|+++.+.++.++ ..+++.=+-+
T Consensus 108 ck~k~~~IlGF~W~~s--~e~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 108 CKTKNANILGFCWTSS--TEIAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred hccCcceeEEEEEecC--eeEEEEec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 1 22233556666544 22333332 3344444332 233445567888899999998877654443 3344444444
Q ss_pred CC
Q 007757 459 GI 460 (590)
Q Consensus 459 ~~ 460 (590)
+.
T Consensus 185 ~~ 186 (657)
T KOG2377|consen 185 RA 186 (657)
T ss_pred ee
Confidence 43
No 473
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.42 E-value=5.4 Score=41.72 Aligned_cols=168 Identities=12% Similarity=0.111 Sum_probs=99.2
Q ss_pred CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-EccCCCCceE---EE--EecCCCCCcEEEEEE
Q 007757 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYV---VK--LNPDDDKQNILLAGM 406 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~---~~--~~~~~~~~~~lvsg~ 406 (590)
++.++.+......|..+-..|||+.|..-+. ..+.|+++.+..... .+-......+ +. .. --.++.-++++.
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~-lL~Gg~SLLv~~ 287 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLY-LLSGGFSLLVVH 287 (733)
T ss_pred hhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHH-HHhCceeEEEEc
Confidence 3444555556677888999999998887765 788888886543221 1111111100 00 00 001234588899
Q ss_pred cCCcEEEE-ECCCCc-----eEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEE
Q 007757 407 SDKKIVQW-DMNTKE-----ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 407 ~dg~I~vw-Dl~t~~-----~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
.||.|..| |.+.+. .++.++-...++.-+.-..+.+-|++-+..|++.++.......+..- ..-..+..+++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~ 365 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAM 365 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeee
Confidence 99999888 554332 12222222233333333334456788888898888765444333221 23336778899
Q ss_pred cCCCCEEEEEEcCCeEEEEEccCce
Q 007757 481 HPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 481 sp~g~~l~s~s~dg~I~iwd~~~~~ 505 (590)
+|++.++++- ..|.|+++.+.+..
T Consensus 366 Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 366 SPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred Ccccchheee-cCCceEEEEecCCC
Confidence 9999999874 46789999887653
No 474
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.19 E-value=26 Score=37.59 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=61.6
Q ss_pred ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEee----cCCCCcccEEEEcCCC------CEEEEEE---
Q 007757 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYIS----EPHMHSMPSISLHPNT------NWLAAQS--- 491 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~--~~~~~----~~~~~~i~~i~~sp~g------~~l~s~s--- 491 (590)
........|+|.|+++.|++--..|.|++++-..... +..+. .........|+++|+- .+|.+..
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 3456678999999997777766579999998654322 21111 1134567899999874 3444442
Q ss_pred -------cCCeEEEEEccCc-eeec-ccccccCc--ccccceEEEEEcCCCCEEEEEeC
Q 007757 492 -------LDNQILIYSTRER-FQLN-KKKRFAGH--IVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 492 -------~dg~I~iwd~~~~-~~~~-~~~~~~~~--~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
....|.-|.+... ..+. ....+.+. .....-..|.|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1234555554321 0010 01111110 00122346889999987664443
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.82 E-value=5.3 Score=38.47 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=46.9
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEe------ec-------CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 437 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI------SE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~------~~-------~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
+...+.+|++.+.+|.+++||+.+.+.+..- .. .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4456889999999999999999887654332 11 2445678888888887766654 5778888764
No 476
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.36 E-value=4.9 Score=26.85 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=29.8
Q ss_pred cCCCEEEEEe-CCCeEEEEECCCCcEEEEccCCCCceEEEE
Q 007757 353 NDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKL 392 (590)
Q Consensus 353 pdg~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~ 392 (590)
|++++|+++. .++.|.++|..+++.+..+..+..+..+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4667666655 578999999999999888887766655543
No 477
>PRK13684 Ycf48-like protein; Provisional
Probab=83.93 E-value=56 Score=33.68 Aligned_cols=141 Identities=9% Similarity=-0.047 Sum_probs=71.8
Q ss_pred EEEEEEcCCcEEEEECCCCceEEEE-cccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC---CCCccc
Q 007757 401 ILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMP 476 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t~~~~~~~-~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~~i~ 476 (590)
.+++.+..|.+..-.-..++....+ ..-...++++.+.++++.++++ ..|.+++=..+.+..-.....+ ....+.
T Consensus 185 ~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~ 263 (334)
T PRK13684 185 KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYL 263 (334)
T ss_pred eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCcccccccee
Confidence 3455555665553211122222222 2334678899999988776665 4576653223333332222212 224577
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 477 ~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
.+.+.+++..+++ +.+|.|. .....+............ ......+.|..+++.+++| ..|.|.-|+
T Consensus 264 ~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 264 DLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEV--PSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred eEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCC--CcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 8889988775554 4566554 333333322221111111 1245567777666666554 577777665
No 478
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.81 E-value=62 Score=37.84 Aligned_cols=174 Identities=15% Similarity=0.201 Sum_probs=91.7
Q ss_pred eEEEEECCCCcEEEEccCCCC-----ceEEEEecCCCCCcEEEEEE-----------cCCcEEEEECC-CCceEEEEcc-
Q 007757 366 NIKYWDTETGQVIRTFSTGKI-----PYVVKLNPDDDKQNILLAGM-----------SDKKIVQWDMN-TKEITQEYDQ- 427 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lvsg~-----------~dg~I~vwDl~-t~~~~~~~~~- 427 (590)
.|++.|..+++.+..+..+.. .....|+... ...++++|. .+|.++.|++- .++.+.-+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~-~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSE-YQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCC-CceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 488888888877766654332 1222233222 223444443 24557777653 3332222211
Q ss_pred -cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce
Q 007757 428 -HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 428 -h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~ 505 (590)
-.+.|. +.+|-..++++| -...+++||+...+.++...... ...|..+.+ .+..+++|...-.+.++..+...
T Consensus 933 ~~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 933 EIPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CCCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 223443 444555555544 45789999998877766554333 334555555 45677777766666555443211
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 506 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 506 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
+.+..+.......+++.+.+ -|..-++.++.-|.+++-.+
T Consensus 1008 --n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1008 --NQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred --CeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEEC
Confidence 11223333333445554443 34456777777787777754
No 479
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=83.71 E-value=53 Score=33.29 Aligned_cols=235 Identities=11% Similarity=0.040 Sum_probs=112.9
Q ss_pred CCEEEEEeCCCcEEEEEccCC-CeeEEEeccCCCceeEEEEecCCCEEEEEe-CCCeEEEEECCCCcEE-----------
Q 007757 312 GHLILSAGMDTKVKIWDVVNS-GKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVI----------- 378 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~----------- 378 (590)
+.+|+.|+.+|...+. +... ....+.+ +...|+++...+.-+.|++-+ ....++++++..-...
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 3589999999855554 5222 3333333 566899999999777666554 3345999998432210
Q ss_pred ---EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC--c--eEEEE---c-ccCCceeEEEEeCC--CCEEE
Q 007757 379 ---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--E--ITQEY---D-QHLGAVNTITFVDS--NRRFV 445 (590)
Q Consensus 379 ---~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~--~--~~~~~---~-~h~~~V~~i~~~p~--~~~l~ 445 (590)
......+...+..+.........++++....+|.++..... + ....+ . ....++..+..+++ ...+.
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 00112222223333322222345666666777777654322 1 11110 0 01123333333332 44667
Q ss_pred EEeCCCcEEEEECCCC--c--E--EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC-ceeecccccccCccc
Q 007757 446 TSSDDKSLRVWEFGIP--V--V--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIV 518 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~--~--~--~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~ 518 (590)
.|+..+...++++... . . .............++..-+++.+|++ - +....+.|... .........+
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc-~-~~~~v~Vn~~G~~~~r~~~l~w----- 242 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLC-Y-DEFGVFVNLYGKRRSRNPILHW----- 242 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEE-E-CcEEEEEeCCCCccccceEEEc-----
Confidence 7766433444554321 0 0 00000011102223333334444443 3 34444555543 1111111112
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 007757 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 559 (590)
.....++++. ..||+.-..+ .|.++++.++..++++..
T Consensus 243 ~~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 2223345554 4577666544 599999999999888874
No 480
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.03 E-value=6 Score=43.88 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=44.5
Q ss_pred CCEEEEEeCCCcEEEEEccC---CCeeEEE-ec-c--------------------CCCceeEEEEec----CCCEEEEEe
Q 007757 312 GHLILSAGMDTKVKIWDVVN---SGKCMRT-YM-G--------------------HSKAVRDISFCN----DGTKFLTAS 362 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~---~~~~~~~-~~-~--------------------h~~~V~~l~fsp----dg~~l~s~s 362 (590)
...|+.+..||.+....... .+..... .. . -...+..++++. +..+|++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 56777778888888777643 2211111 11 0 123455666666 678999999
Q ss_pred CCCeEEEEECCCCcEEEEccC
Q 007757 363 YDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
.|+.||+||+.+++++.....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEET
T ss_pred CCCeEEEEECCCCeEEEEecc
Confidence 999999999999999776533
No 481
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=83.01 E-value=1.1e+02 Score=36.50 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=98.1
Q ss_pred CeEEEEECCCCcEEEEccCCCC--ceEEEE---ecC---CCCCcEEEEEEc---------CCcEEEEECCC-----Cc--
Q 007757 365 KNIKYWDTETGQVIRTFSTGKI--PYVVKL---NPD---DDKQNILLAGMS---------DKKIVQWDMNT-----KE-- 420 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~~~--~~~~~~---~~~---~~~~~~lvsg~~---------dg~I~vwDl~t-----~~-- 420 (590)
..|.+....+++.+..+..... +.++.. ... .....++++|.. .|.+++||+-. ++
T Consensus 1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 4566666666666655443322 222221 111 112356777753 58999999732 21
Q ss_pred ---eEEEE--cccCCceeEEEEeCCCCEEEEEeCCCcEEEEEC-CCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC
Q 007757 421 ---ITQEY--DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF-GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 421 ---~~~~~--~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl-~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 494 (590)
.+..+ +...++|..++=. +| +|+++. ...|.||++ +....+..-. -.-++......--.++|+.|.--.
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~-GqKI~v~~l~r~~~ligVaF--iD~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQ-GQKIIVRKLDRDSELIGVAF--IDLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEe-cc-EEEEcc-CcEEEEEEeccCCcceeeEE--eccceeEEehhhhhhheehhhhhh
Confidence 12221 3456788777654 34 555544 356999999 3333222111 111222222222356677776666
Q ss_pred eEEEEEccCceeecccccccCcccccceEEEEEcCCCC--EEEEEeCCCcEEEEeCC--------CCeEEEEEecCCCCE
Q 007757 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWK--------SCKVFRTLKCHEGVC 564 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~--------t~~~~~~l~~h~~~V 564 (590)
.|.+........ +...+......-.+.++.|--+|. ++++++.+++|+++-.. ..++++.-.-|-+.+
T Consensus 1159 sisfl~fqeep~--rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~~ 1236 (1366)
T KOG1896|consen 1159 SISFLGFQEEPY--RLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGAH 1236 (1366)
T ss_pred ceEEEEEccCce--EEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEeccc
Confidence 666655433211 111111111123355566666665 46788999999988532 234555555555543
Q ss_pred EE
Q 007757 565 IG 566 (590)
Q Consensus 565 ~~ 566 (590)
..
T Consensus 1237 vs 1238 (1366)
T KOG1896|consen 1237 VS 1238 (1366)
T ss_pred ee
Confidence 33
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.00 E-value=40 Score=35.95 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=25.0
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
.|..+++.+..+.+++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488899998889999999999999999964
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.83 E-value=77 Score=34.49 Aligned_cols=141 Identities=17% Similarity=0.208 Sum_probs=68.4
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc--eEEEEecCCCC
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDK 398 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~--~~~~~~~~~~~ 398 (590)
.+.+.+.|. .|.....+.........+.+.++|.+++..+ ..+..+|+. |+.+..+...... ....+.+.+ +
T Consensus 127 ~~~~~~iD~--~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-n 200 (477)
T PF05935_consen 127 SSYTYLIDN--NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-N 200 (477)
T ss_dssp EEEEEEEET--TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-T
T ss_pred CceEEEECC--CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC-C
Confidence 334444453 4444444433222222266778888777655 888999985 6666665554421 122222222 2
Q ss_pred CcEEEEEEc-------------CCcEEEEECCCCceEEEEc--ccC-------------------------CceeEEEEe
Q 007757 399 QNILLAGMS-------------DKKIVQWDMNTKEITQEYD--QHL-------------------------GAVNTITFV 438 (590)
Q Consensus 399 ~~~lvsg~~-------------dg~I~vwDl~t~~~~~~~~--~h~-------------------------~~V~~i~~~ 438 (590)
+++|+.+.. .-.|..+| .+|+.+..+. .|. --++++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 366666661 23466777 7887777653 111 137889999
Q ss_pred CCCCE-EEEEeCCCcEEEEECCCCcEEEEee
Q 007757 439 DSNRR-FVTSSDDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 439 p~~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~ 468 (590)
+.... ++++-.-..|...|.++++..-.+.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 84444 4554445588888877777665554
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.77 E-value=47 Score=35.39 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=24.8
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
..+.++...+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3377889988889999999999999999974
No 485
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.29 E-value=12 Score=41.70 Aligned_cols=67 Identities=21% Similarity=0.405 Sum_probs=44.5
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
..+++|.-+|. +.-+++++.||.|++|+.. .+.... +-....+-..+.|...| |+++..|+.+.-|.
T Consensus 15 e~~~aiqshp~-~~s~v~~~~d~si~lfn~~-~r~qsk-i~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPG-GQSFVLAHQDGSIILFNFI-PRRQSK-ICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCC-CceEEEEecCCcEEEEeec-ccchhh-hhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 34778888898 8999999999999999983 322211 11122333456666554 66677778887785
No 486
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.84 E-value=49 Score=37.43 Aligned_cols=263 Identities=13% Similarity=0.143 Sum_probs=121.6
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 376 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~ 376 (590)
.|-+.++.+.|.-+.|..+ ..-.|.+ .....+..+-.-...|...+||.|...++....+..|.+++.. -.
T Consensus 74 ~hf~~~~~~~f~~~~gDii-~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~-fd 144 (1243)
T COG5290 74 KHFHVLTFEYFLIDEGDII-HLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKY-FD 144 (1243)
T ss_pred hhhhhhheeeEEecCCcEE-EEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecc-cc
Confidence 3556677777766644433 2222221 1112222233356789999999999988888888899888743 12
Q ss_pred EEEEccCCC-----CceEEEEecCCCCCcEEEEEEcCCcEEEEEC------CCCceEEEEcccCCceeEEEEeCCCCEEE
Q 007757 377 VIRTFSTGK-----IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM------NTKEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 377 ~~~~~~~~~-----~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl------~t~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
++..+.... ....+..-|.... ..+ -|- .-.-.+-|. ..|.+... . ..-.-|+|-.+..+++
T Consensus 145 ~ise~~L~~~dl~ef~khi~VgWgkke-tqf-rgk-~~raqlrdptmp~~vD~G~l~av-d---~~k~~i~wrgD~~y~~ 217 (1243)
T COG5290 145 PISEYHLKKSDLVEFGKHIRVGWGKKE-TQF-RGK-GARAQLRDPTMPYMVDYGDLFAV-D---TNKKIIFWRGDTEYNL 217 (1243)
T ss_pred ccchhhcchhHHHHhccceEeeecccc-hhc-ccc-chhhhccCCCCcccccccceeEe-e---CCceEEEEccCcceee
Confidence 222211110 0011111111000 000 000 000011111 11111110 0 1113355655666665
Q ss_pred EEeCC----CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC-----eEEEEEccCceeecccccccCc
Q 007757 446 TSSDD----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGH 516 (590)
Q Consensus 446 s~s~D----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~ 516 (590)
++... ..+++|.-. ..+.....+..+.-..++|-|+|..+++-..|| .|.+|..+. ..-.....-.+
T Consensus 218 v~r~Ee~prra~rvysre--g~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG-LrHGef~lr~~- 293 (1243)
T COG5290 218 VGRSEERPRRAFRVYSRE--GQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG-LRHGEFDLRVG- 293 (1243)
T ss_pred ecchhcccccceeeeccc--cccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC-cccCCccccCC-
Confidence 55432 235565421 112233344455556689999999999987654 355554322 11111100000
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEe
Q 007757 517 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
....+..++|.-....++.+ ....|.+|-.++-.-.-.....-..+.-+.|+|.....|.-.+
T Consensus 294 -~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 294 -CDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred -chhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence 01223335555544444433 4557999987765544333333345667889986555444433
No 487
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.49 E-value=36 Score=29.81 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=71.3
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCC--------CcEEEEccCCCCceEEEEecCC--CCCcEEEEEEcCCcEEEEECCC
Q 007757 349 ISFCNDGTKFLTASYDKNIKYWDTET--------GQVIRTFSTGKIPYVVKLNPDD--DKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 349 l~fspdg~~l~s~s~Dg~I~vWd~~t--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvsg~~dg~I~vwDl~t 418 (590)
-.|......|++++.-|.|.|++... ...+..+.....+.+++.-+.. .....|+.|+ ...|..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 34555556788888889999998753 3356667777777777655542 3345566665 56789999987
Q ss_pred CceEEEEcccCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCcEE
Q 007757 419 KEITQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
..-+.. +.-...|++|.+-. ...-++..+.+.+|.-||..-....
T Consensus 83 N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 654432 23346677777642 2234555555677777776544433
No 488
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.34 E-value=8 Score=25.74 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCCEEEEEE
Q 007757 529 PDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 529 pdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
|++++|++++ .++.|.++|..+++.+..+..... ...++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 5777776655 578999999999999888876333 345554
No 489
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.29 E-value=16 Score=41.04 Aligned_cols=94 Identities=11% Similarity=0.234 Sum_probs=47.8
Q ss_pred CceeEEEEecCCCEEEEEeCCC-----eEEEEECC---CCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEE
Q 007757 344 KAVRDISFCNDGTKFLTASYDK-----NIKYWDTE---TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg-----~I~vWd~~---t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwD 415 (590)
+.-..++|-|+|..+++-+.|| .|+++.-+ -|..-............+|.... .+++....+.|.+|-
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s----~vlav~~~n~~~lwt 322 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS----TVLAVAEGNLLKLWT 322 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH----HHHHHhhcceEEEEE
Confidence 3344589999999999987654 34444322 12221112222222233333322 133444567788887
Q ss_pred CCCCceEEEEcccCCceeEEEEeCCC
Q 007757 416 MNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 416 l~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
..+-.--......-..+.-+.|+|..
T Consensus 323 tkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 323 TKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ccceEEEEEEeecCCCcceeeecccc
Confidence 66543222222233456667777754
No 490
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.28 E-value=6.9 Score=43.39 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=45.7
Q ss_pred CCCCEEEEEEcCCeEEEEEccC----ceeecc-----------ccccc------CcccccceEEEEEcC----CCCEEEE
Q 007757 482 PNTNWLAAQSLDNQILIYSTRE----RFQLNK-----------KKRFA------GHIVAGYACQVNFSP----DGRFVMS 536 (590)
Q Consensus 482 p~g~~l~s~s~dg~I~iwd~~~----~~~~~~-----------~~~~~------~~~~~~~v~~v~~sp----dg~~l~s 536 (590)
++...|+++..||.+....... +..... +..+- .......+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888888888877654 110000 00000 011123445566666 7789999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEe
Q 007757 537 GDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 537 gs~dg~I~iwd~~t~~~~~~l~ 558 (590)
-+.|+.|++||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977654
No 491
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.10 E-value=64 Score=32.44 Aligned_cols=159 Identities=16% Similarity=0.292 Sum_probs=86.3
Q ss_pred CcEEEEECCCCceEEEEccc------CCceeEEEEeCCC------CEEEEEeCCCcEEEEECCCCcEEEEeecCCC----
Q 007757 409 KKIVQWDMNTKEITQEYDQH------LGAVNTITFVDSN------RRFVTSSDDKSLRVWEFGIPVVIKYISEPHM---- 472 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h------~~~V~~i~~~p~~------~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~---- 472 (590)
-+|.+||+.++++++++.-. .+.++.+.+.... -.+++=+..+.|.|+|+.++...+.... +.
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~p 112 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPDP 112 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS-
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-Ccceec
Confidence 36888999999988877432 3457778877632 1234444456899999998876655532 11
Q ss_pred ---------------CcccEEEEcC---CCCEEEEEEcCCeEEEEEccCceee-----c------ccccccCcccccceE
Q 007757 473 ---------------HSMPSISLHP---NTNWLAAQSLDNQILIYSTRERFQL-----N------KKKRFAGHIVAGYAC 523 (590)
Q Consensus 473 ---------------~~i~~i~~sp---~g~~l~s~s~dg~I~iwd~~~~~~~-----~------~~~~~~~~~~~~~v~ 523 (590)
..+..++.+| ++++|..+...+. .+|.+.+.... . ....+ +.. .+...
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k-~~~s~ 189 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDK-GSQSD 189 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----SEC
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-ccc-CCCCc
Confidence 1244555544 5556665554332 23333221100 0 00111 110 12334
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEEEE-ecCC--CCEEEEEEcC
Q 007757 524 QVNFSPDGRFVMSGDGEGKCWFWDWKSCK---VFRTL-KCHE--GVCIGCEWHP 571 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~dg~I~iwd~~t~~---~~~~l-~~h~--~~V~~v~~sp 571 (590)
.++++++|.+.++--..+.|..|+..+.- .+..+ +... ..+.++.+.+
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP 243 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc
Confidence 57888999888888899999999987611 12222 2222 3567788876
No 492
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.81 E-value=1.2e+02 Score=35.30 Aligned_cols=157 Identities=13% Similarity=0.188 Sum_probs=94.4
Q ss_pred cCCCceeEEEEe---c----CCCEEEEEeCCCeEEEEECCCC---------------cEEEEcc----CCCCceEEEEec
Q 007757 341 GHSKAVRDISFC---N----DGTKFLTASYDKNIKYWDTETG---------------QVIRTFS----TGKIPYVVKLNP 394 (590)
Q Consensus 341 ~h~~~V~~l~fs---p----dg~~l~s~s~Dg~I~vWd~~t~---------------~~~~~~~----~~~~~~~~~~~~ 394 (590)
.-..+|..|+|. . ..++|++ -....+.|+...-. .++..+. .+....-++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788889988 2 1234444 34466667662111 2233333 234445677877
Q ss_pred CCCCCcEEEEEEcCCcEEEEECCCC-----ceEEEEcccCCc----------eeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007757 395 DDDKQNILLAGMSDKKIVQWDMNTK-----EITQEYDQHLGA----------VNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~vwDl~t~-----~~~~~~~~h~~~----------V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
... ..|++....|...||++..+ ........+.+. -..|.|.++...|++++. ..+.++|+.
T Consensus 156 ~~~--~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~ 232 (765)
T PF10214_consen 156 WDQ--RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFE 232 (765)
T ss_pred Ccc--ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECC
Confidence 665 47999999999999999211 111111112222 347889888788888775 568899998
Q ss_pred CCcEEE-EeecCCCCcccEEEEcCC--CCEEEEEEcCCeEEEEEccC
Q 007757 460 IPVVIK-YISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 460 ~~~~~~-~~~~~~~~~i~~i~~sp~--g~~l~s~s~dg~I~iwd~~~ 503 (590)
...... .+.......|..+.-+|. +..|+. ....|.++++..
T Consensus 233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred CCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 776644 232334556888888876 333333 236677777765
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=80.67 E-value=78 Score=33.14 Aligned_cols=201 Identities=10% Similarity=0.154 Sum_probs=108.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceE---EEEecCCCCCcEEEEEEcC---CcEEEEECC--CCceEEEE
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV---VKLNPDDDKQNILLAGMSD---KKIVQWDMN--TKEITQEY 425 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~---~~~~~~~~~~~~lvsg~~d---g~I~vwDl~--t~~~~~~~ 425 (590)
...+|+.....+-+.+||+. |+.+..+..+....+ ..|...+..-.++++...+ ..|++|-+. ++. +..+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 45578888888999999997 556666655443321 1122222211233444433 468888664 343 3333
Q ss_pred cc-------cCCceeEEEEe--C-CCC-EEEEEeCCCcEEEEECC---CC----cEEEEeecCCCCcccEEEEcCCCCEE
Q 007757 426 DQ-------HLGAVNTITFV--D-SNR-RFVTSSDDKSLRVWEFG---IP----VVIKYISEPHMHSMPSISLHPNTNWL 487 (590)
Q Consensus 426 ~~-------h~~~V~~i~~~--p-~~~-~l~s~s~Dg~I~iwdl~---~~----~~~~~~~~~~~~~i~~i~~sp~g~~l 487 (590)
.. ....+..+|+- + ++. +.+....+|.+..|.+. .+ ..++.+.. ...+..|.......+|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCE
Confidence 21 12345667764 3 344 56677888988888773 22 34555543 4478889999888999
Q ss_pred EEEEcCCeEEEEEccCceee--cccccccCcccccceEEEEE--cCCC-CEEEEE-eCCCcEEEEeCCC-CeEEEEEe
Q 007757 488 AAQSLDNQILIYSTRERFQL--NKKKRFAGHIVAGYACQVNF--SPDG-RFVMSG-DGEGKCWFWDWKS-CKVFRTLK 558 (590)
Q Consensus 488 ~s~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~v~~v~~--spdg-~~l~sg-s~dg~I~iwd~~t-~~~~~~l~ 558 (590)
+.+-.+--|.-|+....... ..+....+.....-+-.+++ ..+| .||++. -.+++..||+... ...+..|.
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 99999988888887632211 11112222222333444554 3443 355544 4678899999875 34455553
No 494
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.08 E-value=65 Score=38.49 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.1
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
-......++|.|. .++++.|...|.|+++-.
T Consensus 34 ~~~~~~~~afD~~-q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 34 FPSTPSALAFDPT-QGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCCCCcceeeccc-cceEEEEEecccEEEecc
Confidence 3345677889998 899999999999999976
No 495
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.70 E-value=14 Score=43.92 Aligned_cols=137 Identities=11% Similarity=0.169 Sum_probs=79.7
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCcccEEEEc-C-------CCCEEEEEEcCCeEEEEEccCceeecccccccC----c
Q 007757 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH-P-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG----H 516 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~s-p-------~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~----~ 516 (590)
-|+.+.+|++.+......+. ...+.|..+.+- | .=+++++...--.|.++-+.-.........+.. .
T Consensus 97 iDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 47889999999866665553 244455554432 2 223444444455566664432211111111211 1
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC----C----CeE----------------EEEEe-cCCCCEEEEEEcC
Q 007757 517 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK----S----CKV----------------FRTLK-CHEGVCIGCEWHP 571 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~----t----~~~----------------~~~l~-~h~~~V~~v~~sp 571 (590)
.....+.++....+|+.+++|-.+ .+|.+. . .++ +-.+. .+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 234567888888899888777544 445321 1 111 11122 4566899999876
Q ss_pred CCCCEEEEEeCCCcEEEeC
Q 007757 572 LEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 572 ~~~~~l~s~g~DG~I~iWD 590 (590)
...++.+-+.-|+|.+||
T Consensus 253 -SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 253 -SRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred -ccceeeeeccCceEEEEE
Confidence 667899999999999997
No 496
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=79.60 E-value=84 Score=32.88 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=16.7
Q ss_pred CCCEEEEEeCCC-----------eEEEEECCCCcEEE
Q 007757 354 DGTKFLTASYDK-----------NIKYWDTETGQVIR 379 (590)
Q Consensus 354 dg~~l~s~s~Dg-----------~I~vWd~~t~~~~~ 379 (590)
++.+++.|+... .+..||..+.+...
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~ 120 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQK 120 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEe
Confidence 566777776542 46778887765443
No 497
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=78.25 E-value=54 Score=31.27 Aligned_cols=52 Identities=4% Similarity=0.060 Sum_probs=36.1
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d 493 (590)
..|+.+...+.|.+|++..........-+..+.|..+.++..|+||++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEee
Confidence 3444445667899999984333222223466889999999999999997544
No 498
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.92 E-value=87 Score=32.09 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=44.2
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCc------EEEEEccCCC---eeEE-----EeccCCC--------ceeEEEEecCCC
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTK------VKIWDVVNSG---KCMR-----TYMGHSK--------AVRDISFCNDGT 356 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~------I~iWd~~~~~---~~~~-----~~~~h~~--------~V~~l~fspdg~ 356 (590)
-++++.|.+.|+ +..+++-+.+|. +..+.+.... ..+. .+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~-~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPD-DGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCC-CCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 467889999986 556666677777 6656552211 1111 1111111 233667766777
Q ss_pred EEEEEeCC------CeEEEEECCCCcEEEEc
Q 007757 357 KFLTASYD------KNIKYWDTETGQVIRTF 381 (590)
Q Consensus 357 ~l~s~s~D------g~I~vWd~~t~~~~~~~ 381 (590)
++++.-.+ ..|..++.. |+.+..+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~ 127 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRF 127 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceE
Confidence 66666555 556666654 5444433
No 499
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=77.49 E-value=1.2e+02 Score=33.30 Aligned_cols=224 Identities=7% Similarity=0.093 Sum_probs=102.7
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEcc-CCCeeEEEeccCCCceeEEEEecC----CC------EEEEEe---CC
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV-NSGKCMRTYMGHSKAVRDISFCND----GT------KFLTAS---YD 364 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fspd----g~------~l~s~s---~D 364 (590)
....+++.+..+++.+|+.||.-|.=.++.+. ..-..+..+. .-++|.++++... .. .|++++ .+
T Consensus 255 ~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~ 333 (504)
T PF10433_consen 255 CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKR 333 (504)
T ss_dssp -S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG
T ss_pred CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCC
Confidence 55667788777633588888876655555542 1223444443 4568999988641 11 566654 46
Q ss_pred CeEEEEECCCC---cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC---CCceEEEEc--ccC---Ccee
Q 007757 365 KNIKYWDTETG---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYD--QHL---GAVN 433 (590)
Q Consensus 365 g~I~vWd~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~---t~~~~~~~~--~h~---~~V~ 433 (590)
|.+++..-.-+ ..+..........+..+........+++.+..+. -.++.+. ..+.+.... +-. ..+.
T Consensus 334 gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~ 412 (504)
T PF10433_consen 334 GSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLA 412 (504)
T ss_dssp -EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEE
T ss_pred CcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeE
Confidence 78888743211 1222222222222222222221235666665543 3344442 333332221 111 1222
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccc
Q 007757 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
+-.+ . +..++=... ..|++.+.........+..+....|.+.++. +.+++.+..++.+.++.+............
T Consensus 413 ~~~~-~-~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 487 (504)
T PF10433_consen 413 AGNV-G-DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDE 487 (504)
T ss_dssp EEEE-T-TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE--
T ss_pred EEEc-C-CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeecc
Confidence 2222 2 344444443 4588898877777777766666677777764 467777778899999988665432221111
Q ss_pred cCcccccceEEEEEcC
Q 007757 514 AGHIVAGYACQVNFSP 529 (590)
Q Consensus 514 ~~~~~~~~v~~v~~sp 529 (590)
........+.++..+|
T Consensus 488 ~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 488 TILELDNEISCLSIEP 503 (504)
T ss_dssp --EE-SS-EEEEE---
T ss_pred ccccCCCceEEEEeCC
Confidence 1001234566666654
No 500
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.30 E-value=40 Score=37.74 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=46.9
Q ss_pred CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC
Q 007757 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl 416 (590)
..++++.-+|.|+.|+++..||+|++++..............+...+.|... -+++..+|..+.-|.-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnh-----gl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNH-----GLVTATSDRRALAWKE 82 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeecc-----ceEEEeccchhheeec
Confidence 4567788889999999999999999999866554333333344444444432 2777788887777753
Done!