Query 007757
Match_columns 590
No_of_seqs 1185 out of 2438
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 09:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 5.3E-43 1.8E-47 361.8 45.1 293 287-590 43-340 (340)
2 1vyh_C Platelet-activating fac 100.0 3.1E-43 1.1E-47 373.4 41.5 287 292-590 101-408 (410)
3 3ow8_A WD repeat-containing pr 100.0 2.2E-42 7.5E-47 354.6 43.2 291 290-590 23-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 2.2E-41 7.7E-46 351.9 44.4 292 289-590 54-354 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 2.5E-41 8.4E-46 343.7 40.4 288 290-587 4-297 (304)
6 4ery_A WD repeat-containing pr 100.0 1.6E-40 5.5E-45 337.9 44.7 293 289-590 13-309 (312)
7 3iz6_a 40S ribosomal protein R 100.0 4.3E-42 1.5E-46 360.7 33.7 296 288-590 55-372 (380)
8 3frx_A Guanine nucleotide-bind 100.0 1.5E-39 5E-44 333.0 42.8 288 290-590 8-314 (319)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-39 6.3E-44 336.0 39.5 295 290-590 6-332 (345)
10 4gqb_B Methylosome protein 50; 100.0 1E-39 3.6E-44 338.1 35.9 282 297-590 28-328 (344)
11 1nr0_A Actin interacting prote 100.0 1.4E-39 4.6E-44 363.2 38.2 322 246-590 149-564 (611)
12 4g56_B MGC81050 protein; prote 100.0 6.8E-40 2.3E-44 341.2 33.2 283 296-590 39-340 (357)
13 4aow_A Guanine nucleotide-bind 100.0 6.7E-38 2.3E-42 320.8 43.8 289 290-590 29-334 (340)
14 1erj_A Transcriptional repress 100.0 2.4E-38 8.1E-43 333.7 41.4 290 291-590 57-386 (393)
15 2xzm_R RACK1; ribosome, transl 100.0 4.4E-38 1.5E-42 325.2 41.4 289 289-590 11-337 (343)
16 3zwl_B Eukaryotic translation 100.0 1.1E-37 3.7E-42 322.0 43.4 287 291-590 24-343 (369)
17 2hes_X YDR267CP; beta-propelle 100.0 1E-37 3.5E-42 320.9 40.8 292 289-590 4-325 (330)
18 2ymu_A WD-40 repeat protein; u 100.0 1.2E-37 4.1E-42 343.5 43.9 309 250-590 268-577 (577)
19 1nr0_A Actin interacting prote 100.0 3.3E-37 1.1E-41 343.9 42.6 318 249-590 23-352 (611)
20 1sq9_A Antiviral protein SKI8; 100.0 2E-37 7E-42 324.8 36.4 290 290-590 7-392 (397)
21 3gre_A Serine/threonine-protei 100.0 4.2E-38 1.4E-42 335.4 31.1 299 288-590 51-437 (437)
22 1r5m_A SIR4-interacting protei 100.0 3.2E-37 1.1E-41 324.9 37.4 327 245-590 46-422 (425)
23 2ymu_A WD-40 repeat protein; u 100.0 1.6E-36 5.6E-41 334.4 44.4 311 249-590 226-536 (577)
24 4a11_B DNA excision repair pro 100.0 3.9E-37 1.3E-41 322.7 37.4 300 288-590 32-362 (408)
25 3ei3_B DNA damage-binding prot 100.0 5.3E-37 1.8E-41 321.0 37.7 291 288-590 62-379 (383)
26 3dm0_A Maltose-binding peripla 100.0 1E-36 3.6E-41 344.9 42.4 289 290-590 373-690 (694)
27 1vyh_C Platelet-activating fac 100.0 4.1E-37 1.4E-41 326.3 35.3 281 245-549 109-410 (410)
28 1gxr_A ESG1, transducin-like e 100.0 7.6E-36 2.6E-40 304.5 42.6 282 294-590 46-334 (337)
29 3odt_A Protein DOA1; ubiquitin 100.0 6.1E-36 2.1E-40 302.2 41.1 284 287-590 6-293 (313)
30 3i2n_A WD repeat-containing pr 100.0 1.2E-36 4.1E-41 313.4 35.0 297 288-590 7-350 (357)
31 2ynn_A Coatomer subunit beta'; 100.0 2.8E-36 9.7E-41 306.3 37.2 249 334-590 4-256 (304)
32 3ow8_A WD repeat-containing pr 100.0 6.8E-36 2.3E-40 306.3 38.0 272 256-549 48-320 (321)
33 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-36 7.2E-41 313.7 34.6 284 295-590 4-358 (372)
34 3frx_A Guanine nucleotide-bind 100.0 5.2E-36 1.8E-40 306.6 36.0 296 242-551 15-318 (319)
35 3k26_A Polycomb protein EED; W 100.0 2.7E-36 9.4E-41 311.5 31.7 290 293-590 12-363 (366)
36 1got_B GT-beta; complex (GTP-b 100.0 2.9E-35 9.8E-40 303.8 38.1 283 242-547 53-340 (340)
37 3dwl_C Actin-related protein 2 100.0 4.8E-37 1.6E-41 320.2 23.8 287 294-590 6-376 (377)
38 4e54_B DNA damage-binding prot 100.0 9E-37 3.1E-41 325.9 26.2 296 289-590 109-427 (435)
39 3mmy_A MRNA export factor; mRN 100.0 2.9E-35 1E-39 303.7 36.2 301 284-589 24-342 (368)
40 2pm9_A Protein WEB1, protein t 100.0 1.1E-36 3.8E-41 321.0 25.1 308 263-590 42-411 (416)
41 2pbi_B Guanine nucleotide-bind 100.0 9E-35 3.1E-39 302.0 37.5 286 242-547 62-354 (354)
42 3iz6_a 40S ribosomal protein R 100.0 5.8E-36 2E-40 314.0 28.7 295 242-552 64-377 (380)
43 4ggc_A P55CDC, cell division c 100.0 4.4E-34 1.5E-38 289.5 39.4 291 285-590 7-312 (318)
44 4gqb_B Methylosome protein 50; 100.0 7.8E-35 2.7E-39 301.5 33.8 288 250-553 36-334 (344)
45 4gga_A P55CDC, cell division c 100.0 4.1E-34 1.4E-38 303.7 39.6 275 301-590 107-392 (420)
46 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-34 5.6E-39 331.6 39.3 291 290-590 4-299 (814)
47 1pgu_A Actin interacting prote 100.0 3.3E-34 1.1E-38 317.6 39.8 314 250-590 166-611 (615)
48 4aez_A CDC20, WD repeat-contai 100.0 2.6E-34 8.8E-39 303.3 36.8 280 294-590 86-377 (401)
49 3vl1_A 26S proteasome regulato 100.0 3.8E-35 1.3E-39 310.2 30.4 317 250-590 62-416 (420)
50 1r5m_A SIR4-interacting protei 100.0 3.5E-34 1.2E-38 301.6 37.5 281 296-590 42-358 (425)
51 3v7d_B Cell division control p 100.0 6.3E-34 2.2E-38 305.5 39.6 301 258-589 134-459 (464)
52 2xzm_R RACK1; ribosome, transl 100.0 5.4E-34 1.8E-38 294.5 36.3 283 255-551 38-341 (343)
53 2pm9_A Protein WEB1, protein t 100.0 2.8E-35 9.5E-40 310.3 26.9 285 298-590 11-334 (416)
54 1yfq_A Cell cycle arrest prote 100.0 9.7E-35 3.3E-39 297.8 28.9 282 292-585 4-315 (342)
55 1erj_A Transcriptional repress 100.0 1.3E-33 4.5E-38 297.4 38.2 285 243-551 63-390 (393)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.4E-33 1.2E-37 298.6 41.8 300 257-590 130-439 (445)
57 2pm7_B Protein transport prote 100.0 6.5E-34 2.2E-38 287.9 33.8 255 292-549 2-284 (297)
58 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-33 5.2E-38 338.8 42.8 291 291-590 607-910 (1249)
59 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.8E-34 3.3E-38 293.0 35.4 295 247-557 19-342 (345)
60 3vl1_A 26S proteasome regulato 100.0 8.5E-35 2.9E-39 307.5 27.7 279 300-590 57-362 (420)
61 3v7d_B Cell division control p 100.0 6.3E-33 2.1E-37 297.7 41.7 281 291-590 113-418 (464)
62 4h5i_A Guanine nucleotide-exch 100.0 1.7E-34 5.6E-39 301.4 28.5 281 299-590 14-340 (365)
63 2hes_X YDR267CP; beta-propelle 100.0 1.3E-33 4.5E-38 290.2 34.8 284 247-550 17-328 (330)
64 1gxr_A ESG1, transducin-like e 100.0 1.2E-33 4.2E-38 288.1 32.9 278 298-590 8-293 (337)
65 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-33 4.6E-38 339.3 38.8 319 252-590 623-1031(1249)
66 2oaj_A Protein SNI1; WD40 repe 100.0 2.4E-33 8.2E-38 325.5 39.5 200 244-464 17-246 (902)
67 3bg1_A Protein SEC13 homolog; 100.0 1.8E-34 6.1E-39 294.8 26.5 252 293-590 7-290 (316)
68 1pgu_A Actin interacting prote 100.0 6.8E-33 2.3E-37 307.0 40.2 322 246-590 20-363 (615)
69 2j04_B YDR362CP, TAU91; beta p 100.0 1E-34 3.6E-39 316.5 24.7 315 258-590 175-514 (524)
70 3dw8_B Serine/threonine-protei 100.0 4.1E-33 1.4E-37 296.8 34.8 279 297-589 26-442 (447)
71 1p22_A F-BOX/WD-repeat protein 100.0 7.1E-33 2.4E-37 295.5 36.3 273 293-590 127-411 (435)
72 4aow_A Guanine nucleotide-bind 100.0 2.7E-32 9.3E-37 279.1 38.3 296 241-552 35-339 (340)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.7E-32 1.3E-36 290.6 40.4 274 291-590 110-388 (445)
74 4ery_A WD repeat-containing pr 100.0 4.2E-32 1.4E-36 275.8 38.8 281 245-549 24-311 (312)
75 2oaj_A Protein SNI1; WD40 repe 100.0 2.2E-33 7.4E-38 325.8 32.9 333 249-590 103-658 (902)
76 4g56_B MGC81050 protein; prote 100.0 1.7E-33 6E-38 292.7 28.4 270 306-590 12-298 (357)
77 3f3f_A Nucleoporin SEH1; struc 100.0 6.1E-33 2.1E-37 283.0 31.5 292 291-590 3-334 (351)
78 3dm0_A Maltose-binding peripla 100.0 1.6E-32 5.6E-37 310.4 37.5 293 243-549 381-692 (694)
79 3jrp_A Fusion protein of prote 100.0 1.5E-32 5.2E-37 284.8 32.8 260 290-551 2-288 (379)
80 2pm7_B Protein transport prote 100.0 1.9E-32 6.6E-37 277.1 31.0 251 336-590 2-282 (297)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 8.2E-33 2.8E-37 291.6 26.2 282 301-590 36-339 (402)
82 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-31 4.7E-36 307.3 35.9 322 243-590 12-383 (814)
83 3zwl_B Eukaryotic translation 100.0 6.5E-31 2.2E-35 271.2 36.0 286 243-554 31-350 (369)
84 1sq9_A Antiviral protein SKI8; 100.0 7.7E-32 2.6E-36 282.3 29.4 296 243-552 15-397 (397)
85 3k26_A Polycomb protein EED; W 100.0 4.5E-32 1.5E-36 279.8 26.7 246 298-550 68-366 (366)
86 1k8k_C P40, ARP2/3 complex 41 100.0 8.8E-31 3E-35 271.3 33.2 288 245-552 9-363 (372)
87 3i2n_A WD repeat-containing pr 100.0 1.3E-31 4.6E-36 275.5 26.2 294 243-553 17-356 (357)
88 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-30 8.1E-35 277.3 35.1 281 299-589 4-387 (450)
89 3jrp_A Fusion protein of prote 100.0 6.8E-31 2.3E-35 272.3 29.4 253 334-590 2-284 (379)
90 4aez_A CDC20, WD repeat-contai 100.0 4.4E-30 1.5E-34 270.9 36.0 274 260-558 107-388 (401)
91 2j04_B YDR362CP, TAU91; beta p 100.0 9.4E-32 3.2E-36 293.2 22.3 273 288-590 123-425 (524)
92 4a11_B DNA excision repair pro 100.0 2.1E-30 7.1E-35 271.5 30.0 331 243-590 42-402 (408)
93 3ei3_B DNA damage-binding prot 100.0 2.3E-30 7.8E-35 270.6 30.2 281 245-550 74-382 (383)
94 4gga_A P55CDC, cell division c 100.0 8.6E-30 3E-34 270.4 35.0 276 264-566 123-411 (420)
95 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-29 3.8E-34 263.7 31.8 281 287-590 7-333 (355)
96 3odt_A Protein DOA1; ubiquitin 100.0 3E-29 1E-33 253.1 33.3 282 245-558 19-304 (313)
97 3lrv_A PRE-mRNA-splicing facto 100.0 4E-30 1.4E-34 265.3 26.7 270 307-589 44-329 (343)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 6.5E-30 2.2E-34 269.4 28.5 279 257-553 48-345 (402)
99 3jro_A Fusion protein of prote 100.0 3.6E-30 1.2E-34 293.9 28.4 257 292-550 2-285 (753)
100 3dwl_C Actin-related protein 2 100.0 5.8E-31 2E-35 274.1 19.4 244 339-590 7-278 (377)
101 2xyi_A Probable histone-bindin 100.0 2.4E-29 8.2E-34 268.0 32.1 247 337-590 122-407 (430)
102 4e54_B DNA damage-binding prot 100.0 4.5E-30 1.5E-34 274.0 25.9 285 249-554 124-434 (435)
103 3gre_A Serine/threonine-protei 100.0 4.8E-31 1.7E-35 280.7 17.3 266 307-590 35-356 (437)
104 2xyi_A Probable histone-bindin 100.0 1.3E-29 4.6E-34 270.0 28.2 255 292-551 121-411 (430)
105 1l0q_A Surface layer protein; 100.0 2.3E-28 8E-33 255.7 36.4 265 312-590 2-272 (391)
106 3bws_A Protein LP49; two-domai 100.0 1.2E-28 4.1E-33 261.5 34.2 285 290-590 114-429 (433)
107 3dw8_B Serine/threonine-protei 100.0 4.9E-30 1.7E-34 273.0 23.5 246 341-590 26-370 (447)
108 1p22_A F-BOX/WD-repeat protein 100.0 4.5E-29 1.5E-33 266.0 30.8 282 258-571 145-434 (435)
109 1yfq_A Cell cycle arrest prote 100.0 2.1E-29 7.2E-34 258.0 26.3 241 337-590 5-279 (342)
110 4ggc_A P55CDC, cell division c 100.0 5.2E-28 1.8E-32 244.7 35.4 262 264-552 43-317 (318)
111 1l0q_A Surface layer protein; 100.0 1E-27 3.5E-32 250.8 37.7 277 259-563 5-288 (391)
112 3f3f_A Nucleoporin SEH1; struc 100.0 8.7E-29 3E-33 252.2 28.7 299 243-557 10-344 (351)
113 4h5i_A Guanine nucleotide-exch 100.0 7.1E-28 2.4E-32 251.2 33.6 287 250-550 20-343 (365)
114 2j04_A TAU60, YPL007P, hypothe 100.0 2.4E-29 8.2E-34 269.6 22.4 265 296-590 12-294 (588)
115 2w18_A PALB2, fancn, partner a 100.0 1.7E-27 5.8E-32 240.6 32.7 281 290-590 26-354 (356)
116 3jro_A Fusion protein of prote 100.0 7.2E-29 2.5E-33 283.2 23.7 251 336-590 2-282 (753)
117 3vu4_A KMHSV2; beta-propeller 100.0 6.8E-28 2.3E-32 250.2 27.0 247 326-590 3-268 (355)
118 3mmy_A MRNA export factor; mRN 100.0 9.9E-28 3.4E-32 247.1 27.7 281 243-548 38-344 (368)
119 3bg1_A Protein SEC13 homolog; 100.0 1.8E-28 6E-33 250.3 19.8 248 242-502 11-292 (316)
120 4gq1_A NUP37; propeller, trans 100.0 6.5E-28 2.2E-32 254.0 22.3 256 296-586 86-383 (393)
121 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-27 5E-32 255.7 23.1 289 246-582 17-350 (588)
122 3lrv_A PRE-mRNA-splicing facto 100.0 8.8E-28 3E-32 247.7 19.4 227 351-590 44-289 (343)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.1E-26 1.1E-30 245.3 30.5 250 295-549 98-390 (450)
124 3bws_A Protein LP49; two-domai 99.9 5.3E-25 1.8E-29 233.4 34.6 273 251-550 129-432 (433)
125 1nir_A Nitrite reductase; hemo 99.9 4.5E-24 1.5E-28 234.0 35.3 317 252-590 145-511 (543)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-24 5.3E-29 229.9 28.1 264 293-571 111-407 (415)
127 2w18_A PALB2, fancn, partner a 99.9 8.5E-24 2.9E-28 213.6 28.7 179 320-501 155-355 (356)
128 4gq1_A NUP37; propeller, trans 99.9 3.1E-25 1.1E-29 233.4 18.4 238 251-502 96-388 (393)
129 1nir_A Nitrite reductase; hemo 99.9 1.5E-23 5.1E-28 229.9 30.6 274 307-590 145-455 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-23 4.5E-28 222.8 27.2 276 299-590 62-384 (415)
131 1ri6_A Putative isomerase YBHE 99.9 3.2E-22 1.1E-26 204.1 31.5 272 313-590 6-305 (343)
132 3u4y_A Uncharacterized protein 99.9 2.1E-22 7.3E-27 205.3 30.1 275 306-590 4-301 (331)
133 3vgz_A Uncharacterized protein 99.9 3E-21 1E-25 198.1 37.1 272 298-583 39-334 (353)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1E-22 3.4E-27 231.5 27.1 282 299-590 36-410 (741)
135 1pby_B Quinohemoprotein amine 99.9 1.1E-21 3.7E-26 199.7 29.6 261 313-590 2-307 (337)
136 2ojh_A Uncharacterized protein 99.9 1.1E-21 3.7E-26 195.0 23.8 252 317-583 17-292 (297)
137 3u4y_A Uncharacterized protein 99.9 3.3E-20 1.1E-24 189.0 34.6 274 289-571 30-324 (331)
138 1ri6_A Putative isomerase YBHE 99.9 4.6E-20 1.6E-24 188.0 34.8 293 260-572 9-333 (343)
139 2ecf_A Dipeptidyl peptidase IV 99.9 7.3E-21 2.5E-25 216.1 28.1 275 301-589 110-455 (741)
140 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-21 4.5E-26 221.5 21.8 277 301-590 18-390 (723)
141 3o4h_A Acylamino-acid-releasin 99.9 5.3E-21 1.8E-25 211.4 25.6 267 299-590 21-312 (582)
142 2z3z_A Dipeptidyl aminopeptida 99.9 1.5E-20 5.1E-25 212.4 29.3 275 299-590 81-432 (706)
143 1pby_B Quinohemoprotein amine 99.9 2.4E-20 8.1E-25 189.7 27.4 257 290-562 22-322 (337)
144 1k32_A Tricorn protease; prote 99.9 2.8E-20 9.6E-25 219.7 31.5 279 292-590 196-499 (1045)
145 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-20 3.7E-25 213.6 24.8 271 302-584 28-378 (706)
146 3hfq_A Uncharacterized protein 99.9 3.1E-19 1.1E-23 183.5 33.0 263 321-589 15-313 (347)
147 3vgz_A Uncharacterized protein 99.9 1.9E-19 6.4E-24 184.7 31.1 243 342-590 39-300 (353)
148 1xfd_A DIP, dipeptidyl aminope 99.9 5.1E-20 1.8E-24 208.5 27.9 285 289-583 47-431 (723)
149 1jmx_B Amine dehydrogenase; ox 99.9 2.1E-19 7.2E-24 183.8 29.3 260 304-590 4-322 (349)
150 2ojh_A Uncharacterized protein 99.8 1.2E-19 4E-24 180.2 24.5 238 293-540 35-292 (297)
151 1k32_A Tricorn protease; prote 99.8 1.7E-19 6E-24 212.9 29.2 275 298-590 294-634 (1045)
152 3pe7_A Oligogalacturonate lyas 99.8 2E-19 6.7E-24 187.5 25.2 293 290-589 21-378 (388)
153 3scy_A Hypothetical bacterial 99.8 3.3E-18 1.1E-22 176.9 34.2 270 312-589 13-333 (361)
154 3hfq_A Uncharacterized protein 99.8 2.4E-18 8.2E-23 176.8 30.2 253 296-555 36-324 (347)
155 3scy_A Hypothetical bacterial 99.8 8.9E-18 3E-22 173.6 32.2 264 298-570 48-360 (361)
156 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.3E-18 1.8E-22 176.1 27.7 274 314-590 4-338 (365)
157 1z68_A Fibroblast activation p 99.8 1.5E-18 5.2E-23 196.5 23.0 276 304-590 20-388 (719)
158 1jmx_B Amine dehydrogenase; ox 99.8 4.1E-17 1.4E-21 166.7 28.5 270 252-560 7-335 (349)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 4.8E-18 1.6E-22 181.0 22.1 201 299-504 36-279 (434)
160 3o4h_A Acylamino-acid-releasin 99.8 3.3E-17 1.1E-21 181.0 24.4 231 343-590 21-273 (582)
161 2oiz_A Aromatic amine dehydrog 99.8 4.2E-16 1.4E-20 161.8 30.7 268 290-573 42-359 (361)
162 1z68_A Fibroblast activation p 99.8 9E-18 3.1E-22 190.1 19.6 285 290-590 47-440 (719)
163 3c5m_A Oligogalacturonate lyas 99.8 3.4E-17 1.2E-21 170.5 22.5 284 291-589 22-378 (396)
164 1jof_A Carboxy-CIS,CIS-muconat 99.7 3.1E-16 1.1E-20 162.7 26.7 247 298-551 38-342 (365)
165 2oit_A Nucleoporin 214KDA; NH2 99.7 3.3E-16 1.1E-20 166.7 27.3 200 297-501 90-331 (434)
166 4a5s_A Dipeptidyl peptidase 4 99.7 2.2E-16 7.7E-21 179.5 25.7 270 301-582 18-383 (740)
167 1q7f_A NHL, brain tumor CG1071 99.7 2.8E-15 9.7E-20 149.4 30.7 238 341-590 27-277 (286)
168 3azo_A Aminopeptidase; POP fam 99.7 6E-16 2.1E-20 173.3 27.2 286 293-589 17-363 (662)
169 1q7f_A NHL, brain tumor CG1071 99.7 3.6E-15 1.2E-19 148.7 29.4 241 297-551 27-281 (286)
170 2oiz_A Aromatic amine dehydrog 99.7 1E-15 3.6E-20 158.8 25.9 257 320-590 29-331 (361)
171 3fvz_A Peptidyl-glycine alpha- 99.7 3.4E-15 1.2E-19 152.7 27.3 240 343-590 23-319 (329)
172 3fvz_A Peptidyl-glycine alpha- 99.7 7.2E-15 2.5E-19 150.2 28.5 243 299-549 23-321 (329)
173 2dg1_A DRP35, lactonase; beta 99.7 2.8E-15 9.6E-20 152.8 25.3 269 300-583 6-300 (333)
174 3dsm_A Uncharacterized protein 99.7 3.9E-14 1.3E-18 144.8 31.4 253 301-569 45-319 (328)
175 2gop_A Trilobed protease; beta 99.7 3E-14 1E-18 145.8 29.4 254 301-589 16-327 (347)
176 2z2n_A Virginiamycin B lyase; 99.7 6.9E-13 2.4E-17 132.1 37.2 274 295-587 10-290 (299)
177 3pe7_A Oligogalacturonate lyas 99.6 1.4E-14 4.9E-19 150.5 24.0 251 331-590 18-326 (388)
178 3azo_A Aminopeptidase; POP fam 99.6 1.3E-14 4.6E-19 162.3 24.8 257 292-560 60-379 (662)
179 3dsm_A Uncharacterized protein 99.6 1.1E-13 3.7E-18 141.5 28.7 256 321-590 16-299 (328)
180 1qks_A Cytochrome CD1 nitrite 99.6 1.1E-12 3.8E-17 143.6 38.1 298 288-590 186-535 (567)
181 4a5s_A Dipeptidyl peptidase 4 99.6 7.4E-14 2.5E-18 158.7 29.3 279 290-582 47-436 (740)
182 1qks_A Cytochrome CD1 nitrite 99.6 6.8E-13 2.3E-17 145.3 35.6 272 312-590 167-474 (567)
183 3e5z_A Putative gluconolactona 99.6 2.5E-13 8.6E-18 136.1 28.9 241 333-588 17-282 (296)
184 3e5z_A Putative gluconolactona 99.6 3.6E-13 1.2E-17 135.0 29.5 245 290-554 18-290 (296)
185 2xdw_A Prolyl endopeptidase; a 99.6 2.1E-13 7.2E-18 154.2 29.2 243 342-590 123-411 (710)
186 3no2_A Uncharacterized protein 99.6 8.5E-13 2.9E-17 131.5 29.0 244 312-567 5-271 (276)
187 2dg1_A DRP35, lactonase; beta 99.6 4.5E-12 1.5E-16 128.9 34.4 243 290-541 35-301 (333)
188 3c5m_A Oligogalacturonate lyas 99.6 4.7E-14 1.6E-18 146.6 19.3 249 328-590 16-326 (396)
189 1rwi_B Serine/threonine-protei 99.6 6.8E-13 2.3E-17 130.6 24.1 240 301-553 25-267 (270)
190 2qc5_A Streptogramin B lactona 99.5 2.7E-11 9.4E-16 120.5 35.5 275 297-589 17-296 (300)
191 2xdw_A Prolyl endopeptidase; a 99.5 2.2E-12 7.4E-17 145.9 30.7 244 297-552 122-416 (710)
192 2gop_A Trilobed protease; beta 99.5 1.5E-12 5.1E-17 133.1 26.4 231 300-561 59-340 (347)
193 1rwi_B Serine/threonine-protei 99.5 2E-12 6.7E-17 127.2 25.7 235 345-590 25-261 (270)
194 2mad_H Methylamine dehydrogena 99.5 3.8E-11 1.3E-15 124.8 36.4 269 308-590 29-347 (373)
195 2bkl_A Prolyl endopeptidase; m 99.5 1.9E-13 6.5E-18 154.2 19.4 241 341-590 118-394 (695)
196 2mad_H Methylamine dehydrogena 99.5 5.9E-11 2E-15 123.4 35.8 252 289-557 57-357 (373)
197 3sjl_D Methylamine dehydrogena 99.5 4.9E-12 1.7E-16 130.7 27.0 272 307-590 40-360 (386)
198 3sjl_D Methylamine dehydrogena 99.5 9.2E-12 3.2E-16 128.6 29.0 266 289-571 69-383 (386)
199 3no2_A Uncharacterized protein 99.5 8.5E-12 2.9E-16 124.2 27.5 212 354-580 4-230 (276)
200 2bkl_A Prolyl endopeptidase; m 99.5 4.2E-13 1.4E-17 151.4 19.0 243 297-553 118-400 (695)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 6.3E-12 2.1E-16 126.4 25.6 242 340-590 14-296 (314)
202 2z2n_A Virginiamycin B lyase; 99.5 9.8E-11 3.3E-15 116.4 31.3 236 341-590 12-252 (299)
203 3g4e_A Regucalcin; six bladed 99.4 1.6E-10 5.6E-15 115.9 32.1 234 341-583 10-263 (297)
204 1yr2_A Prolyl oligopeptidase; 99.4 1.3E-11 4.5E-16 140.2 25.9 238 342-590 161-438 (741)
205 3hrp_A Uncharacterized protein 99.4 1.1E-10 3.8E-15 122.9 30.7 240 300-548 131-408 (409)
206 3c75_H MADH, methylamine dehyd 99.4 4.2E-11 1.4E-15 125.8 27.2 255 288-557 108-409 (426)
207 2qe8_A Uncharacterized protein 99.4 1.6E-11 5.3E-16 126.2 22.7 270 290-585 10-313 (343)
208 3c75_H MADH, methylamine dehyd 99.4 3.5E-11 1.2E-15 126.4 25.1 257 322-590 99-399 (426)
209 3hrp_A Uncharacterized protein 99.4 3.1E-10 1.1E-14 119.4 32.1 240 344-589 131-406 (409)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2.5E-10 8.6E-15 114.6 30.1 240 296-550 14-299 (314)
211 1yr2_A Prolyl oligopeptidase; 99.4 8.6E-11 2.9E-15 133.4 26.6 243 297-552 160-443 (741)
212 2qc5_A Streptogramin B lactona 99.3 1.7E-09 6E-14 107.2 32.1 237 341-590 17-257 (300)
213 3dr2_A Exported gluconolactona 99.3 5.9E-10 2E-14 112.2 26.7 239 335-588 36-302 (305)
214 2ghs_A AGR_C_1268P; regucalcin 99.3 3.7E-09 1.3E-13 107.5 31.6 226 345-583 50-293 (326)
215 1xip_A Nucleoporin NUP159; bet 99.3 5.8E-11 2E-15 123.1 17.7 174 301-491 39-232 (388)
216 1mda_H Methylamine dehydrogena 99.3 1.8E-10 6E-15 119.0 20.4 260 288-571 55-366 (368)
217 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.4E-09 8.1E-14 110.9 29.2 255 312-590 103-375 (376)
218 1kb0_A Quinohemoprotein alcoho 99.3 4.1E-10 1.4E-14 126.2 24.0 270 312-590 77-504 (677)
219 3g4e_A Regucalcin; six bladed 99.2 4.6E-09 1.6E-13 105.2 28.6 230 295-539 8-261 (297)
220 3dr2_A Exported gluconolactona 99.2 2.7E-09 9.2E-14 107.3 26.6 238 290-547 35-303 (305)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.2 4.4E-09 1.5E-13 108.9 28.8 257 312-590 53-334 (376)
222 1yiq_A Quinohemoprotein alcoho 99.2 7.6E-10 2.6E-14 124.3 24.3 273 312-590 70-502 (689)
223 1xip_A Nucleoporin NUP159; bet 99.2 1.4E-10 4.7E-15 120.3 16.4 174 345-537 39-231 (388)
224 1yiq_A Quinohemoprotein alcoho 99.2 2.4E-09 8.2E-14 120.2 26.8 259 312-581 121-537 (689)
225 1mda_H Methylamine dehydrogena 99.2 1.2E-09 4E-14 112.8 21.1 248 323-590 47-343 (368)
226 3iuj_A Prolyl endopeptidase; h 99.2 1.9E-09 6.4E-14 121.4 23.7 241 297-553 126-408 (693)
227 1kb0_A Quinohemoprotein alcoho 99.2 8.8E-09 3E-13 115.4 28.5 257 312-579 128-537 (677)
228 2ghs_A AGR_C_1268P; regucalcin 99.2 5.5E-08 1.9E-12 98.8 32.0 222 300-539 49-291 (326)
229 3iuj_A Prolyl endopeptidase; h 99.1 1.9E-09 6.6E-14 121.3 21.6 238 341-590 126-402 (693)
230 2hz6_A Endoplasmic reticulum t 99.1 7.9E-11 2.7E-15 122.3 5.9 200 354-571 8-213 (369)
231 2ece_A 462AA long hypothetical 99.0 8.1E-08 2.8E-12 100.0 27.0 226 309-538 93-399 (462)
232 3hxj_A Pyrrolo-quinoline quino 99.0 1.5E-08 5.1E-13 102.2 21.2 293 263-589 26-320 (330)
233 2hz6_A Endoplasmic reticulum t 99.0 7.3E-11 2.5E-15 122.5 3.9 223 312-552 9-238 (369)
234 2ece_A 462AA long hypothetical 99.0 1.7E-07 5.7E-12 97.6 29.0 226 350-581 88-399 (462)
235 1kv9_A Type II quinohemoprotei 99.0 3E-08 1E-12 110.9 21.7 273 312-590 66-485 (668)
236 1npe_A Nidogen, entactin; glyc 99.0 1.5E-06 5.1E-11 85.1 31.2 247 314-572 3-261 (267)
237 1fwx_A Nitrous oxide reductase 98.9 9.3E-08 3.2E-12 102.9 23.4 223 354-581 100-406 (595)
238 2iwa_A Glutamine cyclotransfer 98.9 2.1E-07 7.1E-12 91.1 23.7 212 334-551 10-238 (266)
239 3hxj_A Pyrrolo-quinoline quino 98.9 6.7E-09 2.3E-13 104.8 13.1 257 304-590 24-281 (330)
240 2qe8_A Uncharacterized protein 98.9 4.4E-08 1.5E-12 100.2 18.5 222 344-590 17-275 (343)
241 2iwa_A Glutamine cyclotransfer 98.9 3.8E-07 1.3E-11 89.3 23.5 206 375-588 9-232 (266)
242 1w6s_A Methanol dehydrogenase 98.8 8E-07 2.7E-11 97.6 27.3 273 312-590 62-500 (599)
243 3nol_A Glutamine cyclotransfer 98.8 6.2E-07 2.1E-11 86.8 23.2 197 376-580 32-243 (262)
244 2ad6_A Methanol dehydrogenase 98.8 8.8E-07 3E-11 97.1 26.7 274 312-590 62-491 (571)
245 3nok_A Glutaminyl cyclase; bet 98.8 5.8E-07 2E-11 87.1 22.1 196 376-581 44-254 (268)
246 3nol_A Glutamine cyclotransfer 98.8 6.8E-07 2.3E-11 86.5 21.5 197 334-538 32-243 (262)
247 2ad6_A Methanol dehydrogenase 98.8 1.7E-06 5.9E-11 94.7 27.0 238 312-561 115-505 (571)
248 1kv9_A Type II quinohemoprotei 98.8 2E-06 6.9E-11 96.1 27.8 259 312-581 117-520 (668)
249 4a2l_A BT_4663, two-component 98.8 9E-06 3.1E-10 92.8 33.3 310 264-590 95-433 (795)
250 1flg_A Protein (quinoprotein e 98.8 4.9E-06 1.7E-10 91.3 29.7 274 312-590 68-513 (582)
251 3mbr_X Glutamine cyclotransfer 98.7 2.9E-06 1E-10 81.4 24.2 198 376-581 10-223 (243)
252 1fwx_A Nitrous oxide reductase 98.7 2.8E-07 9.4E-12 99.3 18.8 236 310-553 100-434 (595)
253 4a2l_A BT_4663, two-component 98.7 2.9E-05 9.9E-10 88.5 37.0 277 298-589 213-522 (795)
254 3mbr_X Glutamine cyclotransfer 98.7 3.3E-06 1.1E-10 81.0 22.6 197 334-538 10-222 (243)
255 1w6s_A Methanol dehydrogenase 98.7 9.5E-06 3.2E-10 89.1 29.2 255 314-580 123-534 (599)
256 2p4o_A Hypothetical protein; p 98.7 2.9E-05 1E-09 77.7 29.9 237 334-581 23-277 (306)
257 2fp8_A Strictosidine synthase; 98.6 9.4E-06 3.2E-10 81.8 26.0 235 344-590 19-310 (322)
258 3nok_A Glutaminyl cyclase; bet 98.6 5.9E-06 2E-10 80.0 22.8 190 290-491 44-253 (268)
259 1flg_A Protein (quinoprotein e 98.6 2.6E-05 8.7E-10 85.6 30.7 259 312-580 117-547 (582)
260 2p4o_A Hypothetical protein; p 98.6 2.1E-05 7.1E-10 78.8 27.6 239 287-541 20-279 (306)
261 1npe_A Nidogen, entactin; glyc 98.6 2.9E-05 1E-09 75.8 28.0 222 300-532 36-263 (267)
262 2fp8_A Strictosidine synthase; 98.6 2E-05 6.9E-10 79.3 26.7 242 295-549 14-312 (322)
263 3v9f_A Two-component system se 98.5 0.00012 4.2E-09 83.1 33.9 278 299-590 257-565 (781)
264 3v64_C Agrin; beta propeller, 98.5 0.00021 7.2E-09 73.0 30.1 247 299-559 33-284 (349)
265 3tc9_A Hypothetical hydrolase; 98.4 7.3E-05 2.5E-09 78.8 26.5 240 345-589 138-426 (430)
266 3v65_B Low-density lipoprotein 98.4 0.0002 7E-09 74.2 29.3 255 301-569 78-337 (386)
267 1ijq_A LDL receptor, low-densi 98.4 0.0016 5.5E-08 65.3 33.9 228 322-558 10-246 (316)
268 1k3i_A Galactose oxidase precu 98.4 6.5E-06 2.2E-10 91.8 17.7 271 304-582 190-530 (656)
269 3v9f_A Two-component system se 98.3 0.00067 2.3E-08 77.0 33.6 274 300-590 211-521 (781)
270 3tc9_A Hypothetical hydrolase; 98.3 0.00017 5.7E-09 76.0 26.3 241 301-548 138-428 (430)
271 3p5b_L Low density lipoprotein 98.3 0.0015 5.2E-08 67.9 33.2 245 313-567 84-337 (400)
272 4hw6_A Hypothetical protein, I 98.3 0.00023 7.8E-09 75.0 26.6 239 345-589 140-429 (433)
273 2xbg_A YCF48-like protein; pho 98.3 0.0047 1.6E-07 62.2 34.9 273 299-590 35-319 (327)
274 3v64_C Agrin; beta propeller, 98.3 0.0012 4.1E-08 67.3 30.3 231 347-589 37-271 (349)
275 1ijq_A LDL receptor, low-densi 98.2 0.0014 4.8E-08 65.7 30.1 221 358-589 4-234 (316)
276 4hw6_A Hypothetical protein, I 98.2 0.00046 1.6E-08 72.7 27.1 242 301-548 140-431 (433)
277 3v65_B Low-density lipoprotein 98.2 0.00067 2.3E-08 70.2 27.4 231 347-589 80-314 (386)
278 2xzh_A Clathrin heavy chain 1; 98.2 0.003 1E-07 62.5 29.6 252 322-586 49-325 (365)
279 3sov_A LRP-6, low-density lipo 98.2 0.00045 1.5E-08 69.5 23.9 229 321-558 12-246 (318)
280 3qqz_A Putative uncharacterize 98.1 0.001 3.4E-08 64.5 25.2 205 338-548 21-251 (255)
281 1k3i_A Galactose oxidase precu 98.1 0.00014 4.8E-09 81.0 21.1 237 298-539 241-530 (656)
282 3kya_A Putative phosphatase; s 98.1 0.00064 2.2E-08 72.2 24.6 248 302-554 141-479 (496)
283 2xe4_A Oligopeptidase B; hydro 98.1 0.00051 1.7E-08 77.7 24.7 197 297-501 170-398 (751)
284 3qqz_A Putative uncharacterize 98.1 0.0064 2.2E-07 58.8 28.8 203 293-501 20-251 (255)
285 3m0c_C LDL receptor, low-densi 98.0 0.0055 1.9E-07 69.2 32.6 229 320-558 402-640 (791)
286 3p5b_L Low density lipoprotein 98.0 0.0027 9.4E-08 65.9 28.2 222 357-589 85-316 (400)
287 1bpo_A Protein (clathrin); cla 98.0 0.024 8.3E-07 58.3 34.1 253 321-586 47-324 (494)
288 3ei3_A DNA damage-binding prot 97.9 0.012 4E-07 69.4 32.2 216 366-588 808-1057(1158)
289 2p9w_A MAL S 1 allergenic prot 97.9 0.0067 2.3E-07 60.5 25.4 207 295-503 8-265 (334)
290 3amr_A 3-phytase; beta-propell 97.8 0.019 6.4E-07 57.9 28.6 185 312-502 40-262 (355)
291 3kya_A Putative phosphatase; s 97.8 0.005 1.7E-07 65.3 25.8 239 346-589 141-471 (496)
292 3ei3_A DNA damage-binding prot 97.8 0.041 1.4E-06 64.8 36.0 231 291-536 504-753 (1158)
293 3sov_A LRP-6, low-density lipo 97.8 0.0027 9.2E-08 63.8 22.7 216 364-589 12-234 (318)
294 3amr_A 3-phytase; beta-propell 97.8 0.0025 8.7E-08 64.1 21.7 195 390-590 31-260 (355)
295 2p9w_A MAL S 1 allergenic prot 97.8 0.011 3.9E-07 58.9 25.8 210 341-552 10-267 (334)
296 4a0p_A LRP6, LRP-6, low-densit 97.8 0.029 1E-06 61.7 31.8 232 314-558 8-245 (628)
297 3s94_A LRP-6, low-density lipo 97.8 0.039 1.3E-06 60.6 32.7 280 300-588 84-418 (619)
298 2xe4_A Oligopeptidase B; hydro 97.8 0.0011 3.8E-08 74.9 20.7 192 390-589 179-394 (751)
299 3m0c_C LDL receptor, low-densi 97.7 0.013 4.4E-07 66.2 27.9 215 363-587 402-626 (791)
300 3s94_A LRP-6, low-density lipo 97.6 0.021 7.1E-07 62.8 28.0 228 321-557 17-250 (619)
301 1n7d_A LDL receptor, low-densi 97.6 0.00018 6.2E-09 80.6 11.3 239 321-568 385-632 (699)
302 2vpj_A Kelch-like protein 12; 97.6 0.0097 3.3E-07 58.6 21.7 228 312-552 15-280 (301)
303 3ii7_A Kelch-like protein 7; p 97.5 0.02 7E-07 56.5 23.5 228 312-552 12-274 (306)
304 2ism_A Putative oxidoreductase 97.5 0.077 2.6E-06 53.8 27.6 233 343-584 30-337 (352)
305 2xn4_A Kelch-like protein 2; s 97.5 0.019 6.6E-07 56.5 22.4 188 354-552 61-278 (302)
306 2xbg_A YCF48-like protein; pho 97.4 0.058 2E-06 54.0 25.2 230 299-547 79-319 (327)
307 2vpj_A Kelch-like protein 12; 97.3 0.014 4.9E-07 57.4 19.3 217 354-584 14-264 (301)
308 4asc_A Kelch repeat and BTB do 97.3 0.034 1.2E-06 55.1 22.2 226 314-553 7-280 (315)
309 3sre_A PON1, serum paraoxonase 97.3 0.035 1.2E-06 56.3 22.2 206 345-558 51-308 (355)
310 4a0p_A LRP6, LRP-6, low-densit 97.2 0.35 1.2E-05 53.0 37.7 156 300-461 80-238 (628)
311 2ism_A Putative oxidoreductase 97.2 0.12 4.2E-06 52.3 25.5 227 299-538 30-333 (352)
312 1n7d_A LDL receptor, low-densi 97.2 0.0024 8.3E-08 71.4 13.1 206 300-508 406-619 (699)
313 1zgk_A Kelch-like ECH-associat 97.1 0.035 1.2E-06 54.9 20.2 227 312-552 25-289 (308)
314 2xn4_A Kelch-like protein 2; s 97.1 0.04 1.4E-06 54.2 20.1 215 356-584 17-262 (302)
315 2be1_A Serine/threonine-protei 97.1 0.0074 2.5E-07 60.8 14.3 197 356-555 11-236 (339)
316 3a9g_A Putative uncharacterize 97.1 0.24 8.1E-06 50.2 25.9 233 343-581 28-330 (354)
317 2woz_A Kelch repeat and BTB do 97.0 0.11 3.8E-06 51.4 22.9 227 314-554 18-291 (318)
318 3ott_A Two-component system se 97.0 0.65 2.2E-05 52.0 34.5 299 263-587 28-347 (758)
319 3ott_A Two-component system se 97.0 0.19 6.6E-06 56.4 27.2 233 343-589 21-256 (758)
320 3a9g_A Putative uncharacterize 97.0 0.37 1.3E-05 48.8 28.3 228 299-538 28-330 (354)
321 1xi4_A Clathrin heavy chain; a 96.9 0.071 2.4E-06 62.7 21.8 238 322-571 48-310 (1630)
322 2xzh_A Clathrin heavy chain 1; 96.8 0.51 1.8E-05 46.8 27.2 195 307-508 74-295 (365)
323 3ii7_A Kelch-like protein 7; p 96.7 0.076 2.6E-06 52.3 18.6 186 312-504 56-273 (306)
324 1zgk_A Kelch-like ECH-associat 96.7 0.066 2.2E-06 52.9 18.0 217 354-584 24-273 (308)
325 2g8s_A Glucose/sorbosone dehyd 96.6 0.41 1.4E-05 48.4 23.0 232 300-543 18-347 (353)
326 4asc_A Kelch repeat and BTB do 96.6 0.11 3.8E-06 51.3 18.4 213 357-583 7-253 (315)
327 3sbq_A Nitrous-oxide reductase 96.4 1.3 4.4E-05 47.1 26.0 245 314-563 72-431 (638)
328 2be1_A Serine/threonine-protei 96.3 0.066 2.3E-06 53.8 15.0 193 312-507 10-235 (339)
329 2uvk_A YJHT; unknown function, 96.3 0.22 7.6E-06 50.0 18.9 220 354-584 19-327 (357)
330 1bpo_A Protein (clathrin); cla 96.3 1.3 4.5E-05 45.6 29.2 196 306-508 72-294 (494)
331 3sre_A PON1, serum paraoxonase 96.2 0.089 3E-06 53.3 15.2 156 431-590 51-249 (355)
332 2uvk_A YJHT; unknown function, 96.0 0.27 9.2E-06 49.4 18.2 235 312-557 20-349 (357)
333 3pbp_A Nucleoporin NUP82; beta 96.0 0.51 1.7E-05 48.5 19.7 146 438-587 29-206 (452)
334 2g8s_A Glucose/sorbosone dehyd 96.0 1.5 5.2E-05 44.0 26.5 240 344-586 18-347 (353)
335 3pbp_A Nucleoporin NUP82; beta 95.8 0.31 1E-05 50.2 17.2 137 409-546 41-208 (452)
336 3s25_A Hypothetical 7-bladed b 95.6 1.9 6.5E-05 42.4 24.5 208 312-551 25-256 (302)
337 1cru_A Protein (soluble quinop 95.4 1.9 6.4E-05 45.2 22.0 109 429-538 26-162 (454)
338 2woz_A Kelch repeat and BTB do 95.1 1.1 3.7E-05 44.1 18.5 144 354-503 109-287 (318)
339 1tl2_A L10, protein (tachylect 95.1 2.1 7.1E-05 40.0 18.5 177 400-586 5-203 (236)
340 3das_A Putative oxidoreductase 94.7 1.6 5.4E-05 43.9 18.1 152 424-579 26-218 (347)
341 2zwa_A Leucine carboxyl methyl 94.1 1.5 5.1E-05 48.6 18.2 198 353-554 396-639 (695)
342 2zwa_A Leucine carboxyl methyl 94.0 1.9 6.4E-05 47.9 18.7 150 400-552 399-579 (695)
343 1tl2_A L10, protein (tachylect 94.0 3 0.0001 38.9 16.7 142 344-496 41-203 (236)
344 1xi4_A Clathrin heavy chain; a 94.0 2.1 7.1E-05 50.7 19.0 195 307-508 73-294 (1630)
345 1cru_A Protein (soluble quinop 93.6 8 0.00027 40.2 28.4 107 343-449 26-163 (454)
346 3b7f_A Glycosyl hydrolase, BNR 92.2 11 0.00037 38.1 25.4 265 299-570 54-391 (394)
347 3das_A Putative oxidoreductase 92.0 11 0.00037 37.7 27.7 239 338-581 26-326 (347)
348 3qhy_B Beta-lactamase inhibito 90.1 3.8 0.00013 39.7 13.3 218 344-589 24-242 (282)
349 3b7f_A Glycosyl hydrolase, BNR 85.4 32 0.0011 34.4 28.6 270 312-588 22-367 (394)
350 3qhy_B Beta-lactamase inhibito 85.4 27 0.00091 33.5 17.9 238 301-571 25-263 (282)
351 3sbq_A Nitrous-oxide reductase 85.1 1.1 3.8E-05 47.6 6.0 92 410-503 299-408 (638)
352 3s25_A Hypothetical 7-bladed b 81.7 40 0.0014 32.7 23.5 139 349-503 109-255 (302)
353 3q6k_A 43.2 kDa salivary prote 81.4 48 0.0016 33.4 23.5 188 365-580 123-341 (381)
354 1zi0_A DNA gyrase subunit A; b 81.3 42 0.0014 32.7 26.0 236 312-550 3-277 (307)
355 3uc1_A DNA gyrase subunit A; D 79.4 50 0.0017 32.4 23.1 272 312-584 3-321 (327)
356 2wg3_C Hedgehog-interacting pr 79.2 11 0.00038 39.3 11.3 111 429-539 13-158 (463)
357 3no0_A DNA gyrase subunit A; D 77.2 52 0.0018 31.4 20.2 195 300-503 24-246 (276)
358 4hvt_A Ritya.17583.B, post-pro 76.5 96 0.0033 34.1 23.7 240 302-549 131-429 (711)
359 4hvt_A Ritya.17583.B, post-pro 74.1 1.1E+02 0.0037 33.6 22.2 228 348-582 133-416 (711)
360 4gq2_M Nucleoporin NUP120; bet 72.9 56 0.0019 37.3 15.8 39 345-383 237-275 (950)
361 3l6v_A GYRA, DNA gyrase subuni 72.5 82 0.0028 31.5 24.4 148 352-503 4-180 (370)
362 1suu_A DNA gyrase subunit A; t 71.9 76 0.0026 30.8 22.4 193 353-549 6-230 (312)
363 1sqj_A OXG-RCBH, oligoxylogluc 70.4 1.4E+02 0.0047 33.2 24.7 147 299-450 14-190 (789)
364 2wg3_C Hedgehog-interacting pr 69.3 1.1E+02 0.0037 31.6 27.3 54 300-354 14-79 (463)
365 4gq2_M Nucleoporin NUP120; bet 68.3 1.7E+02 0.0057 33.4 24.2 38 521-558 237-274 (950)
366 4fhn_B Nucleoporin NUP120; pro 67.1 1.5E+02 0.0052 34.5 18.1 36 523-558 241-276 (1139)
367 1suu_A DNA gyrase subunit A; t 67.0 96 0.0033 30.1 27.1 190 312-503 8-231 (312)
368 3no0_A DNA gyrase subunit A; D 66.7 90 0.0031 29.7 20.1 151 399-550 80-246 (276)
369 3kci_A Probable E3 ubiquitin-p 62.5 1.3E+02 0.0044 30.0 26.5 238 302-550 55-345 (389)
370 1wp5_A Topoisomerase IV; broke 57.0 1.5E+02 0.005 28.9 25.2 190 312-503 5-225 (323)
371 1zi0_A DNA gyrase subunit A; b 54.3 1.6E+02 0.0054 28.4 25.1 228 354-586 2-270 (307)
372 4fhn_B Nucleoporin NUP120; pro 53.2 53 0.0018 38.4 10.9 39 345-383 239-277 (1139)
373 3l6v_A GYRA, DNA gyrase subuni 52.5 1.9E+02 0.0064 28.8 28.7 193 308-503 4-265 (370)
374 3zwu_A Alkaline phosphatase PH 45.4 55 0.0019 35.1 8.6 60 432-491 478-549 (592)
375 3kci_A Probable E3 ubiquitin-p 45.3 2.4E+02 0.0082 27.9 29.9 264 313-589 11-341 (389)
376 3uc1_A DNA gyrase subunit A; D 42.9 2.4E+02 0.0084 27.4 21.3 188 312-503 53-279 (327)
377 3zwu_A Alkaline phosphatase PH 42.5 75 0.0026 34.1 9.0 56 523-578 479-547 (592)
378 4a9v_A PHOX; hydrolase, beta-p 38.3 1.2E+02 0.0041 32.3 9.6 63 430-492 476-550 (592)
379 3f7f_A Nucleoporin NUP120; nuc 37.3 41 0.0014 36.9 6.0 37 345-383 223-259 (729)
380 2cn3_A Xyloglucanase, beta-1,4 37.3 4.4E+02 0.015 28.7 29.0 60 301-362 24-91 (737)
381 1sqj_A OXG-RCBH, oligoxylogluc 36.5 4.7E+02 0.016 28.8 25.6 147 343-493 14-190 (789)
382 3f7f_A Nucleoporin NUP120; nuc 34.6 1.2E+02 0.004 33.3 9.0 31 529-559 229-259 (729)
383 1wp5_A Topoisomerase IV; broke 32.8 3.5E+02 0.012 26.2 22.9 194 353-549 3-224 (323)
384 3q6k_A 43.2 kDa salivary prote 32.6 3.9E+02 0.013 26.7 21.7 188 323-538 124-342 (381)
385 4a9v_A PHOX; hydrolase, beta-p 29.8 1.9E+02 0.0064 30.8 9.4 59 522-580 478-549 (592)
386 1zvt_A Topoisomerase IV subuni 27.0 3.8E+02 0.013 24.8 10.7 153 398-550 1-163 (256)
387 3mvd_K Regulator of chromosome 22.2 5.8E+02 0.02 25.2 31.9 230 345-589 76-370 (423)
388 1sr4_A CDT A, cytolethal diste 21.7 1.6E+02 0.0055 26.6 6.0 97 322-425 69-166 (206)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.3e-43 Score=361.80 Aligned_cols=293 Identities=23% Similarity=0.352 Sum_probs=258.9
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCe
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
++.+..+++.+|.+.|++++|+|+ +++|++|+.||+|+|||+ ..+..+..+..|...|.+++|+|++++|++|+.|+.
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET-TTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccchhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 345678899999999999999999 999999999999999999 678888999999999999999999999999999999
Q ss_pred EEEEECCCCc----EEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 367 IKYWDTETGQ----VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 367 I~vWd~~t~~----~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
|++|++.++. ....+..+ ..+.++.+.+. ..+++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD----NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCC----CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 9999998763 33444332 33445566553 359999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
++|++++.|+.|++||++.......+. .|...|.+++|+|++.+|++++.|+.|++||++....+... ........
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~~~~~~~ 272 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY---SHDNIICG 272 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCTTCCSC
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE---ccCCcccc
Confidence 999999999999999999988877764 58889999999999999999999999999999876554322 22222346
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|+||+.||+|+|||
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 88999999999999999999999999999999999999999999999999 778999999999999998
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-43 Score=373.37 Aligned_cols=287 Identities=26% Similarity=0.463 Sum_probs=262.6
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
...+.+|..+|++++|+|+ +.+|++|+.||+|+|||+ .++.++.++.+|...|++++|+|++++|++|+.|++|+|||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 4568899999999999999 899999999999999999 68888999999999999999999999999999999999999
Q ss_pred CCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 372 TETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 372 ~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
+.+++++..+..+ ..+.++.|.+++ .+|++|+.|+.|++||++++.++..+.+|...|.++.|++++.+|++++.|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 9999999888654 345677777754 689999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcccEEEEcCC--------------------CCEEEEEEcCCeEEEEEccCceeeccc
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN--------------------TNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~--------------------g~~l~s~s~dg~I~iwd~~~~~~~~~~ 510 (590)
++|++||+.+......+. .|...|.+++|+|+ +.+|++++.|+.|++||++++..+
T Consensus 256 ~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~--- 331 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL--- 331 (410)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE---
T ss_pred CeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE---
Confidence 999999999988877664 58889999999996 679999999999999999887655
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 511 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..+.+| ...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+| ++.+|+||+.||+|+|||
T Consensus 332 ~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 332 MTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred EEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEe
Confidence 345566 56788999999999999999999999999999999999999999999999999 677999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=354.62 Aligned_cols=291 Identities=19% Similarity=0.349 Sum_probs=258.5
Q ss_pred ceeEEecCCCCCeeEEEEcCC---CCCEEEEEeCCCcEEEEEccCCC-eeEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 290 RLVHTWSGHTKGVSAIRFFPK---YGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~---~g~~L~sgs~Dg~I~iWd~~~~~-~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+.+.+++|.+.|++|+|+|+ ++.+|+||+.|++|+||++.... .+...+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 345677899999999999985 26799999999999999994322 34557899999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE
Q 007757 366 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
+|++||+.+++.+..+..+ .....+.|+|++ .+|++|+.++.|++||+++++....+..|...|.+++|+|++++|
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS---QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTS---SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCC---CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence 9999999999998888654 345577887754 689999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEE
Q 007757 445 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
++++.|+.|++||++++..+..+. .|...|.+++|+|++.+|++++.|+.|++||++..... ..+.+| ...|.+
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~h--~~~v~~ 253 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA---GTLSGH--ASWVLN 253 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE---EEECCC--SSCEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee---EEEcCC--CCceEE
Confidence 999999999999999998887764 58889999999999999999999999999999876544 345566 567889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++|+|++++|++|+.||.|+|||+.+++++.++.+|...|.+++|+| ++.+|++++.||.|+|||
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999 778999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-41 Score=351.89 Aligned_cols=292 Identities=18% Similarity=0.288 Sum_probs=255.0
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
.+..+++.||.+.|++++|+|+ +.+|+||+.||+|+|||. ..+.....+..|...|.+++|+|+|.+|++++.|+.|+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDS-FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred cEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 4677899999999999999999 899999999999999998 57778888889999999999999999999999999999
Q ss_pred EEECCCCc------EEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeC--
Q 007757 369 YWDTETGQ------VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-- 439 (590)
Q Consensus 369 vWd~~t~~------~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p-- 439 (590)
+|++.... ....+. ....+..+.|.+++ ..|++++.|+.|++||+++++.+..+.+|...|.++.|+|
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD---MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 99986542 122222 23344566666643 5799999999999999999999999999999999999987
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccc
Q 007757 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
++++|++++.||.|++||++++..+..+. .|...|.+++|+|++.+|++++.|+.|++||++....+.. +..+...
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~---~~~~~~~ 284 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI---YSKESII 284 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCTTCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE---EcCCCcc
Confidence 46899999999999999999998877764 5888999999999999999999999999999987654432 2222223
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|++|+.||+|+|||
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 4577899999999999999999999999999999999999999999999999 678999999999999997
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-41 Score=343.70 Aligned_cols=288 Identities=19% Similarity=0.326 Sum_probs=255.0
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
++.++|.+|.+.|++|+|+|+ +.+|++|+.||+|+|||+ .++..+..+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 567889999999999999999 999999999999999999 688899999999999999999999999999999999999
Q ss_pred EECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeC-CCCEEEE
Q 007757 370 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVT 446 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p-~~~~l~s 446 (590)
||+.+++++..+..+ ..+.++.++|++ .+|++|+.|+.|++||++++ .+...+.+|...|.+++|+| ++..|++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCC---CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 999999999888754 345677777754 68999999999999999987 55677899999999999999 6789999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC--CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEE
Q 007757 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp--~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
|+.|++|++||++.......+...+...+..+.|+| ++.+|++++.|+.|++||++++..+ ..+.+| ...+..
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~---~~~~~h--~~~v~~ 233 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEGH--MSNVSF 233 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE---EEEECC--SSCEEE
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc---eeeCCC--CCCEEE
Confidence 999999999999887776666666778899999987 6789999999999999999887655 445566 467889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCC-EEEEEeCCCcEE
Q 007757 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCGWDGLIK 587 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~s~g~DG~I~ 587 (590)
++|+|++++|++|+.||.|++||+.+++++..+..|...+.+++|+|.+.. +|++|+.||.+.
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 999999999999999999999999999999999999999999999996554 478887776543
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-40 Score=337.95 Aligned_cols=293 Identities=26% Similarity=0.536 Sum_probs=259.6
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
..+..++.+|.+.|++++|+|+ +++|++|+.||.|+||++ ..++....+.+|...|.+++|+|++++|++|+.|+.|+
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeC-CCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 4677899999999999999999 899999999999999999 67888899999999999999999999999999999999
Q ss_pred EEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE
Q 007757 369 YWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS 447 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~ 447 (590)
+||+.+++++..+..+ ..+.++.+.+.+ .+|++|+.|+.|++||+++++.+..+..|..+|.+++|+|++++|+++
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 9999999998888654 345566777643 689999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEE
Q 007757 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
+.|+.|++||+++...+..+...+...+..++|+|++++|++++.|+.|++||+++...+.. +.+|..........+
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT---YTGHKNEKYCIFANF 244 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE---ECSSCCSSSCCCEEE
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE---EEecCCceEEEEEEE
Confidence 99999999999999888887666777899999999999999999999999999988765533 334432223223344
Q ss_pred -cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEe--CCCcEEEeC
Q 007757 528 -SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG--WDGLIKYWD 590 (590)
Q Consensus 528 -spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g--~DG~I~iWD 590 (590)
.+++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+| ++.+|++++ .||+|++|+
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWK 309 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEE
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEec
Confidence 46789999999999999999999999999999999999999999 677899887 699999995
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.3e-42 Score=360.69 Aligned_cols=296 Identities=22% Similarity=0.403 Sum_probs=250.6
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeE
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 367 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I 367 (590)
...+.++|.||.+.|++++|+|+ +.+|+||+.||+|+|||+ ..+..+..+..|...|.+++|+|+|++|++|+.|+.|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~-~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNA-LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEET-TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred eeEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 44678899999999999999999 899999999999999999 6888899999999999999999999999999999999
Q ss_pred EEEECCCCc-------EEEEccCCCC--ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-----cccCCcee
Q 007757 368 KYWDTETGQ-------VIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-----DQHLGAVN 433 (590)
Q Consensus 368 ~vWd~~t~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-----~~h~~~V~ 433 (590)
++||+.+.. ....+. ++. +..+.+.+. ....|++|+.|+.|++||+++++.+..+ .+|...|.
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPD--QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSS--SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred EEEECCCCccccCCccceeecc-CCCcceEEEEEecC--CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999997542 112222 232 334444443 3467999999999999999999988887 67899999
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 434 TITFVD-SNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 434 ~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
++.|++ ++.+|++|+.|++|++||++.. ..+..+ ..|...|.+++|+|++.+|++++.|+.|++||++++..+....
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 999987 7889999999999999999854 444444 4689999999999999999999999999999999876654332
Q ss_pred cccCc--ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE----ecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 007757 512 RFAGH--IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 512 ~~~~~--~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l----~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
..... .....+.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+| ++.+|+||+.||+
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKN 367 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSC
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCC
Confidence 21111 11234778999999999999999999999999999998888 67999999999999 7789999999999
Q ss_pred EEEeC
Q 007757 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|+|||
T Consensus 368 i~iW~ 372 (380)
T 3iz6_a 368 LKIWA 372 (380)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-39 Score=333.05 Aligned_cols=288 Identities=19% Similarity=0.374 Sum_probs=249.1
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC----CeeEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+..+|.||.+.|++|+|+|+++++|++|+.|++|++|++... +.++..+.+|...|.+++|+|++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4667899999999999999986799999999999999998421 346788999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC----
Q 007757 366 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---- 440 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~---- 440 (590)
+|+|||+.+++++..+..+ ..+.++.+.+++ .+|++|+.|+.|++||++ +..+..+.+|...|.++.|+|.
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKA---SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS---CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 9999999999999888654 345566676643 689999999999999997 5577788899999999999985
Q ss_pred --CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccc
Q 007757 441 --NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 441 --~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
+..|++++.|+.|++||++.......+. .|...|.+++|+|++++|++++.|+.|++||+.+...+... ..
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~---~~--- 236 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SA--- 236 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE---EC---
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cC---
Confidence 4489999999999999999887776654 58899999999999999999999999999999887655433 22
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~--------h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
...+.+++|+|++.+|++++.+ .+++|++.....+..+.. |...+.+++|+| ++.+|++|+.||.|+|||
T Consensus 237 ~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEE
Confidence 2468899999999999998865 599999999888877753 456799999999 788999999999999997
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=336.02 Aligned_cols=295 Identities=18% Similarity=0.302 Sum_probs=241.1
Q ss_pred ceeEEecCCCC-CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeE--E-EeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 290 RLVHTWSGHTK-GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM--R-TYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~v~~l~gH~~-~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~-~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.++.++.+|.. .|.+|+|+|+ +.+|++|+.|++|+||++. .+... . ...+|...|.+++|+|++++|++|+.|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEE-TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcC-CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 57889999998 9999999999 9999999999999999994 44322 2 2368999999999999999999999999
Q ss_pred eEEEEECCCCc--EEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc---eEEEEcccCCceeEEEEeC
Q 007757 366 NIKYWDTETGQ--VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 366 ~I~vWd~~t~~--~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~---~~~~~~~h~~~V~~i~~~p 439 (590)
.|+||++.++. ++..+..+ ..+..+.|+|++ .+|++|+.|+.|++||++++. .+..+..|...|.+++|+|
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG---NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC---CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 99999998774 45555443 345677777754 689999999999999998763 4667889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec----------
Q 007757 440 SNRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN---------- 508 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~---------- 508 (590)
++.+|++++.|+.|++||++..... ......|...|.+++|+|++++|++++.|+.|++|+........
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence 9999999999999999999876533 22334688999999999999999999999999999974321111
Q ss_pred --ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------E-EEEEecCCCCEEEEEEcCCCCCEE
Q 007757 509 --KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--------V-FRTLKCHEGVCIGCEWHPLEQSKV 577 (590)
Q Consensus 509 --~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~--------~-~~~l~~h~~~V~~v~~sp~~~~~l 577 (590)
....+.+. ....|.+++|+|++.+|++++.|+.|++|+..... . .....+|...|.+++|+|++..+|
T Consensus 241 ~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 241 WKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred cceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 01112221 24568899999999999999999999999986542 1 122357999999999999666799
Q ss_pred EEEeCCCcEEEeC
Q 007757 578 ATCGWDGLIKYWD 590 (590)
Q Consensus 578 ~s~g~DG~I~iWD 590 (590)
+||+.||+|+|||
T Consensus 320 aS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 320 ASCSDDGEVAFWK 332 (345)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEE
Confidence 9999999999996
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=338.07 Aligned_cols=282 Identities=18% Similarity=0.300 Sum_probs=232.1
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEcc----------CCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCe
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV----------NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~----------~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
.|...|.+++|+|+ |.+|++++ |+++++||.. ...........|...|.+++|+|++ .|++|+.||.
T Consensus 28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 57778999999999 89999888 7788888731 0111122233466789999999985 7889999999
Q ss_pred EEEEECCCCcEEEEcc-----CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 367 IKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
|+|||+.+++.+..+. +...+.+++|++++ .+|++|+.|+.|++||+++++++..+.+|...|++++|++++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg---~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG---TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence 9999999987654432 23445677777654 689999999999999999999999999999999999999987
Q ss_pred C-EEEEEeCCCcEEEEECCCCcEEEEeec-CCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccccCccc
Q 007757 442 R-RFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 442 ~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
. +|++++.|++|++||++++.....+.. .+...+.+++|+|+ +.+|++|+.|+.|++||++++..+ ..+.+|
T Consensus 182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~---~~~~~h-- 256 (344)
T 4gqb_B 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV---LSSAVH-- 256 (344)
T ss_dssp TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC---EEEECC--
T ss_pred CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE---EEEcCC--
Confidence 4 789999999999999999888777643 34567899999995 578999999999999999887554 445666
Q ss_pred ccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 519 AGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 519 ~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
...|.+++|+|++ ++|++|+.||.|+|||+.+++++ .+.+|.+.|++++|+|++..+|+|||.||+|++|+
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 5678999999998 58999999999999999998865 47899999999999997777899999999999995
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-39 Score=363.20 Aligned_cols=322 Identities=19% Similarity=0.293 Sum_probs=265.7
Q ss_pred CCCCcccCCcce-eecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007757 246 GEKGEHVEDKST-FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 246 ~~~~~~~~~~s~-~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I 324 (590)
......+.+... ...++..|...|.|-. .+.++++++.+|...|++++|+|+ +++|++|+.|++|
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-------------~~~~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i 214 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEG-------------PPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTI 214 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEET-------------TTBEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEEC-------------CCCeEeeeeccccCceEEEEECCC-CCEEEEEECCCcE
Confidence 344445555544 4678889999999943 234678899999999999999999 9999999999999
Q ss_pred EEEEccCCCeeEEEec-------cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC--ceEEEEecC
Q 007757 325 KIWDVVNSGKCMRTYM-------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPD 395 (590)
Q Consensus 325 ~iWd~~~~~~~~~~~~-------~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~ 395 (590)
+|||+ ..++++..+. +|...|.+++|+|+|++|++++.|++|+|||+.+++++..+..+.. .....+.+.
T Consensus 215 ~lwd~-~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
T 1nr0_A 215 VLYNG-VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293 (611)
T ss_dssp EEEET-TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred EEEEC-CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc
Confidence 99999 5777888774 7999999999999999999999999999999999999888765432 223333333
Q ss_pred CCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec------
Q 007757 396 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE------ 469 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~------ 469 (590)
+..+++++.|+.|++||..++.....+.+|...|++++|+|++++|++++.|++|++||+.++.....+..
T Consensus 294 ---~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 294 ---KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp ---SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred ---CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence 25799999999999999999998888999999999999999999999999999999999876543322100
Q ss_pred ---------------------------------------------------------------------------CCCCc
Q 007757 470 ---------------------------------------------------------------------------PHMHS 474 (590)
Q Consensus 470 ---------------------------------------------------------------------------~~~~~ 474 (590)
.+...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 450 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 450 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence 01234
Q ss_pred ccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeE
Q 007757 475 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKV 553 (590)
Q Consensus 475 i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~ 553 (590)
+.+++|+|++++|++++.|+.|++|++....... ... .+| ...|.+++|+|+|++|++++.|+.|++|++.+ +++
T Consensus 451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~-~~~-~~h--~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE-VKT-IVH--PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE-EEE-EEC--SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred ceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee-eec-cCC--CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce
Confidence 6789999999999999999999999997653211 122 334 56789999999999999999999999999988 666
Q ss_pred EEE--EecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 554 FRT--LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 554 ~~~--l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.. +..|...|.+++|+| ++.+|++|+.|++|+|||
T Consensus 527 ~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred eeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEE
Confidence 554 345999999999999 778999999999999996
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.8e-40 Score=341.17 Aligned_cols=283 Identities=19% Similarity=0.327 Sum_probs=231.2
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeC------CCcEEEEEccCCCe----eEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 296 SGHTKGVSAIRFFPKYGHLILSAGM------DTKVKIWDVVNSGK----CMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~~L~sgs~------Dg~I~iWd~~~~~~----~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+|...|++|+|+|+ |.+|++|+. |+.|++|+.. .+. ......+|...|.+++|+|++. +++++.||
T Consensus 39 ~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~-~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 39 ACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDP-EGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp -CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSC-C---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred ccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECC-CCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 479999999999999 999999998 7789999873 332 3344567999999999999875 66788899
Q ss_pred eEEEEECCCCcEEEEcc-----CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC
Q 007757 366 NIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
+|+|||+.+++...... ....+.++.|++++ .+|++|+.|+.|++||+++++.+..+..|...|++++|+++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG---TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 99999999887653322 23445677777654 68999999999999999999999999999999999999998
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEEEee-cCCCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccccCcc
Q 007757 441 NR-RFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 441 ~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~-~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
+. +|++++.|+.|++||++++.....+. ..+...+.+++|+|+ +.+|++++.|+.|++||+++...+ ..+.+|
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~---~~~~~~- 268 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA---QTSAVH- 268 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC---EEECCC-
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe---EEEecc-
Confidence 75 78999999999999999887665543 245667899999997 568999999999999999886544 344555
Q ss_pred cccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 518 VAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 518 ~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
...|.+++|+|++ ++|++|+.||.|+|||+.+++++..+ +|.+.|++++|+|.++.+|+|||.||+|++||
T Consensus 269 -~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 269 -SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp -SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred -ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 4678899999987 68999999999999999999988765 79999999999997788999999999999996
No 13
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.7e-38 Score=320.82 Aligned_cols=289 Identities=23% Similarity=0.393 Sum_probs=244.1
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC----CeeEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.+..+|+||++.|++|+|+|+++++|+|||.|++|+|||+... ..+...+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 4667899999999999999987899999999999999998432 246778899999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEccCCCCce-EEEEecCCCCCcEEEEEEcCCcEEEEECCCCce-EEEEcccCCceeEEEEeCCC--
Q 007757 366 NIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSN-- 441 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~-~~~~~~h~~~V~~i~~~p~~-- 441 (590)
.|++|+................. ...+.+. ..+|++|+.|+.+++||+..... ......|...+.+++|++++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTT---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeec---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 99999999988877766554433 4444443 36799999999999999987644 33456789999999998764
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
..+++++.|+.|++||++....+..+. .|...|.+++|+|++++|++++.|+.|++||+++...+... .. ...
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~---~~---~~~ 258 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL---DG---GDI 258 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE---EC---SSC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee---cC---Cce
Confidence 578899999999999999988877764 58899999999999999999999999999999987655332 22 246
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe---------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 522 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~---------~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+..++|+|++.+++ ++.|+.|++||+.++.++..+. +|...|++++|+| ++.+|++|+.||.|+|||
T Consensus 259 v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 259 INALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred EEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEe
Confidence 78899999886654 5569999999999988776654 5788999999999 778999999999999997
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-38 Score=333.69 Aligned_cols=290 Identities=20% Similarity=0.376 Sum_probs=244.5
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC------------------ceeEEEEe
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK------------------AVRDISFC 352 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~------------------~V~~l~fs 352 (590)
+.+.+ +|...|+|++|+|+ |++|++|+ ++.++||++ .++..+..+..|.. .|++++|+
T Consensus 57 ~~~~~-~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 57 LHKSL-DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEE-ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred eEEec-CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEEC
Confidence 33444 69999999999999 89999976 789999999 67777777766542 49999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCc
Q 007757 353 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA 431 (590)
Q Consensus 353 pdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~ 431 (590)
|+|++|++|+.|+.|+|||+.+++.+..+..+ ..+..+.|.+++ .+|++|+.|+.|++||+++++....+. +...
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~ 208 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDG 208 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---CEEEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence 99999999999999999999999998887654 345667777654 689999999999999999998887775 5678
Q ss_pred eeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEee------cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 432 VNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYIS------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 432 V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~------~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
+.+++|+| ++++|++++.|+.|++||++++..+..+. ..|...|.+++|+|++.+|++++.|+.|++||++..
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999 89999999999999999999888776653 357889999999999999999999999999999764
Q ss_pred eeec---------ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCC---
Q 007757 505 FQLN---------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL--- 572 (590)
Q Consensus 505 ~~~~---------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~--- 572 (590)
.... ....+.+| ...+.+++|+|++.+|++|+.||.|++||+.+++++..+.+|.+.|.+++|++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 3211 12234455 467889999999999999999999999999999999999999999999999872
Q ss_pred --CCCEEEEEeCCCcEEEeC
Q 007757 573 --EQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 573 --~~~~l~s~g~DG~I~iWD 590 (590)
++.+|+||+.||+|+|||
T Consensus 367 ~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 367 GPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp CTTCEEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEECCCCcEEECc
Confidence 457899999999999996
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.4e-38 Score=325.15 Aligned_cols=289 Identities=20% Similarity=0.355 Sum_probs=237.6
Q ss_pred cceeEEecCCCCCeeEEEE-----cCCCCCEEEEEeCCCcEEEEEccCC------CeeEEEeccCCCceeEEEEecCCCE
Q 007757 289 KRLVHTWSGHTKGVSAIRF-----FPKYGHLILSAGMDTKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCNDGTK 357 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~f-----sp~~g~~L~sgs~Dg~I~iWd~~~~------~~~~~~~~~h~~~V~~l~fspdg~~ 357 (590)
..+..+|.||.+.|++|+| ++.++.+|++|+.|++|+|||+... +.+...+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3567789999999999999 7733899999999999999999432 3567788999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc---ccCCcee
Q 007757 358 FLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAVN 433 (590)
Q Consensus 358 l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~---~h~~~V~ 433 (590)
|++|+.|++|++||+.+++.+..+..+ ..+.++.|++++ .+|++|+.|+.|++||+... ...... .|...|.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---RQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS 166 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---TEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---CEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence 999999999999999999998888654 455677777754 68999999999999999843 333333 6888999
Q ss_pred EEEEeCCC----------CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 434 TITFVDSN----------RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 434 ~i~~~p~~----------~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
++.|+|++ .+|++++.|+.|++||.. ......+ ..|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 99999986 789999999999999953 3344333 46889999999999999999999999999999954
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEe-----------cCCCCEEEEEEc
Q 007757 504 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLK-----------CHEGVCIGCEWH 570 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~--~l~-----------~h~~~V~~v~~s 570 (590)
..... ..+. + ...+.+++|+|++.+|++| .|+.|++||+.+++... .+. +|...|.+++|+
T Consensus 245 ~~~~~--~~~~-~--~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 245 LTYPQ--REFD-A--GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp CSSCS--EEEE-C--SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred Ccccc--eeec-C--CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 32221 1111 1 2458899999999988766 47789999998876543 443 678889999999
Q ss_pred CCCCCEEEEEeCCCcEEEeC
Q 007757 571 PLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 571 p~~~~~l~s~g~DG~I~iWD 590 (590)
| ++.+|++|+.||.|++||
T Consensus 319 p-~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 319 A-LGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp S-SSCCEEEEETTSEEEEEE
T ss_pred C-CCCeEEEecCCceEEEEE
Confidence 9 678999999999999996
No 16
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=322.05 Aligned_cols=287 Identities=18% Similarity=0.307 Sum_probs=256.2
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
....+.+|.+.|++++|+|+ +++|++|+.||.|+|||+ ..++.+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYS-LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeC-CCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 44678999999999999999 999999999999999999 6888999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC-----CcEEEEECCCCc-----------eEEEEcccCC--ce
Q 007757 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKE-----------ITQEYDQHLG--AV 432 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~vwDl~t~~-----------~~~~~~~h~~--~V 432 (590)
|+.+++++..+.....+..+.+.+++ .++++++.+ +.|++||+.... .+..+..|.+ .+
T Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWKSPVPVKRVEFSPCG---NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECTTS---SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEeecCCCeEEEEEccCC---CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99999999999877778888888754 688999888 999999997653 3444556666 99
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 433 NTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
.+++|+|++++|++++.||.|++||++. ...+..+ ..+...|.+++|+|++.+|++++.|+.|++||+.+........
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence 9999999999999999999999999998 4555555 4588899999999999999999999999999998876554333
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEeCCC--------------cEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEE
Q 007757 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGEG--------------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 577 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg--------------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l 577 (590)
....+..++|+|+++++++++.++ .|++||+.+++++..+.+|...|.+++|+| ++.+|
T Consensus 258 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 330 (369)
T 3zwl_B 258 ------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QGTSY 330 (369)
T ss_dssp ------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEE
T ss_pred ------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CCCEE
Confidence 245678899999999999999988 899999999999999999999999999999 77899
Q ss_pred EEEeCCCcEEEeC
Q 007757 578 ATCGWDGLIKYWD 590 (590)
Q Consensus 578 ~s~g~DG~I~iWD 590 (590)
++++.||.|+|||
T Consensus 331 ~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 331 ASGGEDGFIRLHH 343 (369)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEEcCCCeEEEEE
Confidence 9999999999996
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=320.89 Aligned_cols=292 Identities=17% Similarity=0.267 Sum_probs=233.0
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC-CeeEEEe-cc-CCCceeEEEEecCCCEEEEEeCCC
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-GKCMRTY-MG-HSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~-~~-h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
.++++++.+|.+.|.+++|+|+ +|++|+.|++|+||++... ...+..+ .+ |...|++++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4678899999999999999976 9999999999999999432 2455566 45 999999999999999999999999
Q ss_pred eEEEEECCC-------CcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC----ceEEEEcccCCcee
Q 007757 366 NIKYWDTET-------GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVN 433 (590)
Q Consensus 366 ~I~vWd~~t-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~----~~~~~~~~h~~~V~ 433 (590)
.|+|||+.. .+++..+..+ ..+.++.|+|++ .+|++|+.|+.|++||++.. +++..+.+|...|.
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g---~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG---YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS---CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC---CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 999999853 3445555433 345677777753 68999999999999999532 46778899999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCC--cEEEEeecCCCCcccEEEEcCC--CCEEEEEEcCCeEEEEEccCcee---
Q 007757 434 TITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQ--- 506 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~--~~~~~~~~~~~~~i~~i~~sp~--g~~l~s~s~dg~I~iwd~~~~~~--- 506 (590)
+++|+|++.+|++++.|++|++||+... .++..+ ..|...|.+++|+|+ +.+|++++.|+.|++|++.....
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 9999999999999999999999998765 344444 468899999999998 77999999999999999865311
Q ss_pred --ecccccccC-cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEE-ecCCC-CEEEEEEcCC-CCCEEE
Q 007757 507 --LNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--VFRTL-KCHEG-VCIGCEWHPL-EQSKVA 578 (590)
Q Consensus 507 --~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~--~~~~l-~~h~~-~V~~v~~sp~-~~~~l~ 578 (590)
......+.+ | ...|.+++|++++ +|++|+.||.|+|||..++. .+... .+|.. .|.+++|+|. ++.+|+
T Consensus 237 ~~~~~~~~~~~~h--~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 237 QEWVCEAILPDVH--KRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEEEEEECCSCC--SSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred ceeEEeeeccccc--ccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 011122222 3 4678899999765 89999999999999998874 34333 57877 8999999995 467899
Q ss_pred EEeCCCcEEEeC
Q 007757 579 TCGWDGLIKYWD 590 (590)
Q Consensus 579 s~g~DG~I~iWD 590 (590)
||+.||+|+|||
T Consensus 314 s~s~Dg~v~~W~ 325 (330)
T 2hes_X 314 TGGDDGIVNFWS 325 (330)
T ss_dssp EEETTSEEEEEE
T ss_pred EecCCCcEEEEE
Confidence 999999999996
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-37 Score=343.52 Aligned_cols=309 Identities=25% Similarity=0.494 Sum_probs=264.2
Q ss_pred cccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 007757 250 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
..+.+...+..+...|...|.|-. ..+++..+.+|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 268 v~~~~d~~~l~~~~~d~~i~~w~~--------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 268 VAFRPDGQTIASASDDKTVKLWNR--------------NGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNR 332 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEET--------------TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeC--------------CCcEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeC
Confidence 344455555566677778888842 23567789999999999999999 899999999999999998
Q ss_pred cCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcC
Q 007757 330 VNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 330 ~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
....+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.. ...+..+.+.+++ .+|++++.|
T Consensus 333 --~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~~~~d 406 (577)
T 2ymu_A 333 --NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG---QTIASASDD 406 (577)
T ss_dssp --TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS---SCEEEEETT
T ss_pred --CCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC---CEEEEEeCC
Confidence 45667888999999999999999999999999999999996 5666666654 3445677777654 579999999
Q ss_pred CcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEE
Q 007757 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 488 (590)
+.|++||. +++.+..+..|...|++++|+|++++|++++.|+.|++||.. ...+..+. .|...|.+++|+|++++|+
T Consensus 407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~-~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp SEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEE-CCSSCEEEEEECTTSCEEE
T ss_pred CEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEc-CCCCCEEEEEEcCCCCEEE
Confidence 99999995 577888899999999999999999999999999999999974 44555544 5889999999999999999
Q ss_pred EEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEE
Q 007757 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 489 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+++.|+.|++|+... ..+ ..+.+| ...|.+++|+|+|++|++++.||.|+|||. +++++..+.+|.+.|++++
T Consensus 484 s~~~d~~i~iw~~~~-~~~---~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 484 SASDDKTVKLWNRNG-QLL---QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp EEETTSEEEEEETTS-CEE---EEEECC--SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred EEeCCCEEEEEcCCC-CEE---EEEeCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEE
Confidence 999999999999643 332 445666 467899999999999999999999999995 7889999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEeC
Q 007757 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|+| ++.+|+|+|.||+|++||
T Consensus 557 fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 557 FSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECT-TSSCEEEEETTSCEEEEC
T ss_pred EcC-CCCEEEEEeCCCEEEEeC
Confidence 999 678999999999999998
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.3e-37 Score=343.87 Aligned_cols=318 Identities=13% Similarity=0.147 Sum_probs=260.3
Q ss_pred CcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 007757 249 GEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 249 ~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd 328 (590)
...+.+...+..... +..++.|-.. ..+.+.+|.+|...|++++|+|+ |++|++|+.|++|+|||
T Consensus 23 ~~~~spdg~~l~~~~-~~~v~l~~~~-------------~~~~~~~~~~h~~~v~~~~~spd-g~~lasg~~d~~v~lWd 87 (611)
T 1nr0_A 23 VLGNTPAGDKIQYCN-GTSVYTVPVG-------------SLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWD 87 (611)
T ss_dssp CCEECTTSSEEEEEE-TTEEEEEETT-------------CSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEE
T ss_pred EEeeCCCCCEEEeCC-CCEEEEecCC-------------CcccCeEecCCCCceEEEEECCC-CcEEEEEeCCCCEEEeE
Confidence 334444444444433 3466666432 23567789999999999999999 99999999999999999
Q ss_pred ccC-CCeeEEEeccCCCceeEEEEecCCCEEEEEeCC----CeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEE
Q 007757 329 VVN-SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNIL 402 (590)
Q Consensus 329 ~~~-~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D----g~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 402 (590)
+.. .......+.+|...|.+++|+|++++|++++.+ +.|++||. +..+..+..+ ..+..+.|+|+. ...|
T Consensus 88 ~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~--~~~l 163 (611)
T 1nr0_A 88 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSR--PFRI 163 (611)
T ss_dssp SSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSS--SCEE
T ss_pred CCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCC--CeEE
Confidence 842 234566788999999999999999999999875 47777774 5555555433 345567776653 3579
Q ss_pred EEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec------CCCCccc
Q 007757 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE------PHMHSMP 476 (590)
Q Consensus 403 vsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~------~~~~~i~ 476 (590)
++|+.|+.|++||..++++...+.+|...|++++|+|++++|++++.|++|++||+.++..+..+.. .|...|.
T Consensus 164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~ 243 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243 (611)
T ss_dssp EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred EEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence 9999999999999999999999999999999999999999999999999999999999888877743 6888999
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 007757 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 556 (590)
Q Consensus 477 ~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~ 556 (590)
+++|+|++++|++++.|+.|++||+.+......+..... .......+.| ++..|++++.||.|++||..++++...
T Consensus 244 ~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~ 319 (611)
T 1nr0_A 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR--IEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQV 319 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--GGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC--ccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence 999999999999999999999999988765544332111 1233445666 788999999999999999999999999
Q ss_pred EecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 557 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 557 l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.+|...|.+++|+| ++.+|++++.||+|++||
T Consensus 320 ~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd 352 (611)
T 1nr0_A 320 RYGHNKAITALSSSA-DGKTLFSADAEGHINSWD 352 (611)
T ss_dssp ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred EcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEE
Confidence 999999999999999 788999999999999997
No 20
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2e-37 Score=324.85 Aligned_cols=290 Identities=13% Similarity=0.174 Sum_probs=250.6
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe------eEEEeccCCCceeEEEEecC----C---C
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK------CMRTYMGHSKAVRDISFCND----G---T 356 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~------~~~~~~~h~~~V~~l~fspd----g---~ 356 (590)
.+.+.+.+|.+.|++|+|+| .+|++|+.||.|+||++. ... ++..+.+|...|++++|+|+ + +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESB-CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECC-CcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 45678899999999999987 699999999999999994 554 78888899999999999999 9 9
Q ss_pred EEEEEeCCCeEEEEECCCCcE-----EEEccCC------CCceEEEEe----cCCCCCcE-EEEEEcCCcEEEEECCC--
Q 007757 357 KFLTASYDKNIKYWDTETGQV-----IRTFSTG------KIPYVVKLN----PDDDKQNI-LLAGMSDKKIVQWDMNT-- 418 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~-----~~~~~~~------~~~~~~~~~----~~~~~~~~-lvsg~~dg~I~vwDl~t-- 418 (590)
+|++++.||.|++||+.+++. +..+... ..+.++.+. +++ .+ |++++.||.|++||+++
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL---SHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC---ceEEEEEeCCCcEEEEeCCccc
Confidence 999999999999999998886 6666655 566778887 543 57 99999999999999998
Q ss_pred ----CceEE-----EE-------cccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC--C---CCcccE
Q 007757 419 ----KEITQ-----EY-------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP--H---MHSMPS 477 (590)
Q Consensus 419 ----~~~~~-----~~-------~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~--~---~~~i~~ 477 (590)
++.+. .+ ..|...|.+++|+|++ +|++++.|+.|++||++....+..+... | ...|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence 66655 66 4588999999999999 9999999999999999998887777531 6 788999
Q ss_pred EEEcCCCCEEEEEEcC---CeEEEEEccCceeecccccccCc-----------ccccceEEEEEcCCCCEEEEEeCCCcE
Q 007757 478 ISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGH-----------IVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 478 i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~-----------~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
++|+|++.+|++++.| +.|++||+++...+.. +.+. .....+.+++|+|++++|++|+.||.|
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS---LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE---ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccce---eccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 9999999999999999 9999999988755533 3330 025678899999999999999999999
Q ss_pred EEEeCCCCeEEEEEe------cC---------------CCCEEEEEEcCCCC---------CEEEEEeCCCcEEEeC
Q 007757 544 WFWDWKSCKVFRTLK------CH---------------EGVCIGCEWHPLEQ---------SKVATCGWDGLIKYWD 590 (590)
Q Consensus 544 ~iwd~~t~~~~~~l~------~h---------------~~~V~~v~~sp~~~---------~~l~s~g~DG~I~iWD 590 (590)
++||+.+++++..+. .| ...|.+++|+|++. .+|++++.||.|+|||
T Consensus 316 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 316 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999999999999999 88 89999999999432 7999999999999996
No 21
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-38 Score=335.37 Aligned_cols=299 Identities=14% Similarity=0.233 Sum_probs=245.2
Q ss_pred CcceeEEe-cCCCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEEccC---C--CeeEEEeccCCCceeEEEEecCCCEEEE
Q 007757 288 PKRLVHTW-SGHTKGVSAIRFFP-KYGHLILSAGMDTKVKIWDVVN---S--GKCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 288 p~~~v~~l-~gH~~~V~~l~fsp-~~g~~L~sgs~Dg~I~iWd~~~---~--~~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
..+++.++ .+|.+.|++|+|+| + +.+|++|+.||+|+|||+.. . ......+ +|...|++++|+|++.+|++
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 34677888 99999999999999 7 89999999999999999842 1 1223333 59999999999999999999
Q ss_pred EeCCCeEEEEECC---CCcEEEEcc-------------CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE
Q 007757 361 ASYDKNIKYWDTE---TGQVIRTFS-------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 424 (590)
Q Consensus 361 ~s~Dg~I~vWd~~---t~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~ 424 (590)
|+.||.|++||++ +++.+..+. ......++.+.+.+ .+.+|++|+.|+.|++||+++++.+..
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 9999999999995 555544332 22223333333332 347999999999999999999999999
Q ss_pred Ecc--cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC----CCCEEEEEEcCCeEEE
Q 007757 425 YDQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP----NTNWLAAQSLDNQILI 498 (590)
Q Consensus 425 ~~~--h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp----~g~~l~s~s~dg~I~i 498 (590)
+.. |.+.|++++|+|++.+|++++.||.|++||++....+..+...+...|.+++|+| ++.+|++++.|+.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 988 8999999999999999999999999999999999888887656788999997665 5779999999999999
Q ss_pred EEccCceeeccccc---------------------ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 007757 499 YSTRERFQLNKKKR---------------------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 499 wd~~~~~~~~~~~~---------------------~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
||++++..+..+.. +.+......|.+++|+ ++++|++|+.||.|++||+.+++++..+
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 99987765433321 1221135568889999 7899999999999999999998887777
Q ss_pred ec-------------------------------------CCCCEEEEEEcCC-CCCEEEEEeCCCcEEEeC
Q 007757 558 KC-------------------------------------HEGVCIGCEWHPL-EQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 558 ~~-------------------------------------h~~~V~~v~~sp~-~~~~l~s~g~DG~I~iWD 590 (590)
.+ |...|.+++|++. +..+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 65 8889999999995 367999999999999995
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-37 Score=324.87 Aligned_cols=327 Identities=16% Similarity=0.211 Sum_probs=272.5
Q ss_pred CCCCCcccCCcce-eecccccccccceeec----CCCccccCCCCcc-CCcceeE------EecCCCCCeeEEEEcCCCC
Q 007757 245 GGEKGEHVEDKST-FHGKEETDYQGRSWIA----PPKDAKAANDHCY-IPKRLVH------TWSGHTKGVSAIRFFPKYG 312 (590)
Q Consensus 245 ~~~~~~~~~~~s~-~~~~~~~d~~~r~w~~----~~~~~~~~~~~~~-~p~~~v~------~l~gH~~~V~~l~fsp~~g 312 (590)
+......+.+... +......|...+.|-. ..... .+.+ ....+.+ ...+|.+.|++++|+|+ +
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~ 120 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK----YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-G 120 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC----------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-S
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc----cccccccccccccccccccccCCCCceEEEEEcCC-C
Confidence 4556666777777 8888888999999966 32210 0000 0011111 22347889999999998 9
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC------
Q 007757 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI------ 386 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~------ 386 (590)
++|++|+.||.|+||+. .+..+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.....
T Consensus 121 ~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp SEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred CEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 99999999999999994 7788899999999999999999999999999999999999999999888766543
Q ss_pred ----------ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007757 387 ----------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 387 ----------~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
...+.+.+. ..+++++.++.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDD----DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp -------CCCBSCCEEEET----TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eccccCCcceeeEEEEcCC----CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 556666664 469999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007757 457 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 457 dl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
|++....+..+. .+...|.+++|+|++ +|++++.|+.|++||+.+...+.. +..| ...+.+++|+|++++|++
T Consensus 275 d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~---~~~~--~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 275 HGGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL---SIVD--GVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp CSSSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE---EECT--TCCEEEEEECTTSSEEEE
T ss_pred ECCCCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe---cccC--CccEEEEEEcCCCCEEEE
Confidence 999887776664 488899999999999 999999999999999988765533 3334 456889999999999999
Q ss_pred EeCCCcEEEEeCCCCe--------------------EEEEEecCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 537 GDGEGKCWFWDWKSCK--------------------VFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 537 gs~dg~I~iwd~~t~~--------------------~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++.||.|++||+.+++ ++..+..|.. .|.+++|+| ++.+|++++.||.|+|||
T Consensus 348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEE
T ss_pred EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEe
Confidence 9999999999999988 8999999976 999999999 677999999999999996
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.6e-36 Score=334.44 Aligned_cols=311 Identities=24% Similarity=0.487 Sum_probs=265.9
Q ss_pred CcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 007757 249 GEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 249 ~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd 328 (590)
...+.+...+..+...|...|.|-. ..+++..+.+|...|++++|+|+ +.+|++++.|+.|++|+
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~~w~~--------------~~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVKLWNR--------------NGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWN 290 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECT--------------TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC--------------CCCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEe
Confidence 3445555555666777888888832 23567889999999999999999 89999999999999999
Q ss_pred ccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC
Q 007757 329 VVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 329 ~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
. .++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+..............+.++.+.+++ .++++|+.|
T Consensus 291 ~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~d 365 (577)
T 2ymu_A 291 R--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG---QTIASASDD 365 (577)
T ss_dssp T--TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS---SEEEEEETT
T ss_pred C--CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC---CEEEEEeCC
Confidence 7 67788899999999999999999999999999999999998766554443344555677777754 689999999
Q ss_pred CcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEE
Q 007757 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 488 (590)
+.|++||. +++.+..+..|...|++++|+|++++|++++.|+.|++||.. ...+..+. .|...|.+++|+|++++|+
T Consensus 366 g~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp SEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE-CCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec-CCCCCeEEEEECCCCCEEE
Confidence 99999995 577888899999999999999999999999999999999964 45555554 5888999999999999999
Q ss_pred EEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEE
Q 007757 489 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 489 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+++.|+.|++|+.... .+ ..+.+| ...+.+++|+|++++|++++.|+.|++|| .+++++..+.+|...|++++
T Consensus 443 ~~~~d~~v~~w~~~~~-~~---~~~~~~--~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~ 515 (577)
T 2ymu_A 443 SASDDKTVKLWNRNGQ-LL---QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 515 (577)
T ss_dssp EEETTSEEEEEETTSC-EE---EEEECC--SSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEE
T ss_pred EEcCCCEEEEEECCCC-EE---EEEcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEE
Confidence 9999999999997542 22 344555 46788999999999999999999999999 47889999999999999999
Q ss_pred EcCCCCCEEEEEeCCCcEEEeC
Q 007757 569 WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 ~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|+| ++.+|++++.||.|+|||
T Consensus 516 ~s~-dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 516 FSP-DGQTIASASDDKTVKLWN 536 (577)
T ss_dssp ECT-TSSCEEEEETTSEEEEEC
T ss_pred EcC-CCCEEEEEECcCEEEEEe
Confidence 999 678999999999999997
No 24
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=322.74 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=250.2
Q ss_pred CcceeEEecCCCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEEccCCCeeEEEe-------------ccCCCceeEEEEec
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFP-KYGHLILSAGMDTKVKIWDVVNSGKCMRTY-------------MGHSKAVRDISFCN 353 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp-~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-------------~~h~~~V~~l~fsp 353 (590)
..+....+.+|.+.|++++|+| + +++|++|+.||.|+||++. .+.....+ .+|...|.+++|+|
T Consensus 32 ~~~~~~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 32 LNKDRDVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp ECTTEEECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred cCcceeeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 3456678889999999999999 7 9999999999999999994 44333322 25999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCce
Q 007757 354 -DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 432 (590)
Q Consensus 354 -dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V 432 (590)
++.+|++++.||.|++||+.+++.+..+........+.+.+......++++|+.++.|++||+++++.+..+..|...|
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v 189 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI 189 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence 7889999999999999999999999999888888899999987777899999999999999999999999999999999
Q ss_pred eEEEEeCCCC-EEEEEeCCCcEEEEECCCCc-EEEEee--------------cCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007757 433 NTITFVDSNR-RFVTSSDDKSLRVWEFGIPV-VIKYIS--------------EPHMHSMPSISLHPNTNWLAAQSLDNQI 496 (590)
Q Consensus 433 ~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~-~~~~~~--------------~~~~~~i~~i~~sp~g~~l~s~s~dg~I 496 (590)
.+++|+|++. .|++++.||.|++||++... .+..+. ..|...|.+++|+|++.+|++++.||.|
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 269 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence 9999999998 58999999999999998765 222221 3577889999999999999999999999
Q ss_pred EEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCE
Q 007757 497 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 576 (590)
++||+.+..................+........+..+++++.++.|++||+.+++++..+.+|...|.+++|+| ++.+
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 348 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQE 348 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTE
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCE
Confidence 999998765443222111111111111122233455666777899999999999999999999999999999999 6789
Q ss_pred EEEEeCCCcEEEeC
Q 007757 577 VATCGWDGLIKYWD 590 (590)
Q Consensus 577 l~s~g~DG~I~iWD 590 (590)
|++|+.||.|++||
T Consensus 349 l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 349 LYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEECCCCeEEEEe
Confidence 99999999999996
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.3e-37 Score=321.00 Aligned_cols=291 Identities=16% Similarity=0.223 Sum_probs=241.3
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec--cCCCceeEEEEec-CCCEEEEEeCC
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFCN-DGTKFLTASYD 364 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fsp-dg~~l~s~s~D 364 (590)
+.++.+++.+|...|++++|+|++.++|++|+.||.|+|||+ ..+.....+. +|...|.+++|+| ++++|++++.|
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDY-DVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEET-TSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeC-CCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 456778999999999999999993399999999999999999 4566665554 6999999999999 78999999999
Q ss_pred CeEEEEECCCCcEEEEccCC----CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC
Q 007757 365 KNIKYWDTETGQVIRTFSTG----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~----~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
+.|++||+.+ ..+..+... ..+.++.+++++ .+|++|+.|+.|++||+ +++.+..+..|...|.+++|+|+
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR---QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT---TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC---CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence 9999999996 444444332 346677787754 68999999999999999 57788889999999999999999
Q ss_pred CC-EEEEEeCCCcEEEEECCC----CcEEEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeEEEEEccCceeeccccccc
Q 007757 441 NR-RFVTSSDDKSLRVWEFGI----PVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 441 ~~-~l~s~s~Dg~I~iwdl~~----~~~~~~~~~~~~~~i~~i~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
++ +|++++.|+.|++||++. ...+..+ .|...|.+++|+| ++.+|++++.|+.|++||+++...........
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 99 999999999999999987 5566555 4888999999999 99999999999999999998765443222111
Q ss_pred ----Ccc--------cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--CCCCEEEEEEcCCCCCEEEEE
Q 007757 515 ----GHI--------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 515 ----~~~--------~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~s~ 580 (590)
.+. ....+..++|+|+|++ +|+.||.|+|||+.+++++..+.+ |...+..++|+| ++.+|++|
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~ 370 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASG 370 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEe
Confidence 010 0133445777788777 788999999999999999999987 456777789999 67799999
Q ss_pred eCCCcEEEeC
Q 007757 581 GWDGLIKYWD 590 (590)
Q Consensus 581 g~DG~I~iWD 590 (590)
+ ||.|+|||
T Consensus 371 s-d~~i~iw~ 379 (383)
T 3ei3_B 371 M-GFNILIWN 379 (383)
T ss_dssp E-TTEEEEEE
T ss_pred c-CCcEEEEe
Confidence 7 99999997
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-36 Score=344.87 Aligned_cols=289 Identities=23% Similarity=0.386 Sum_probs=245.4
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC----CeeEEEeccCCCceeEEEEecCCCEEEEEeCCC
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 365 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg 365 (590)
++...+++|++.|++|+|+|+++++|+||+.|++|+||++... +...+.+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4556789999999999999987789999999999999998432 345678899999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE---cccCCceeEEEEeCCC
Q 007757 366 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDSN 441 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~---~~h~~~V~~i~~~p~~ 441 (590)
.|+|||+.++.++..+..+ ..+.+++|++++ .+|++|+.|+.|++||+......... .+|...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN---RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS---SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 9999999999998887654 445677777754 57999999999999998765433322 4688899999999986
Q ss_pred --CEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccc
Q 007757 442 --RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 442 --~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
..|++++.|++|++||++.......+. .|...|.+++|+|++++|++++.|+.|++||+.++..+... .. .
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---~~---~ 602 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---EA---N 602 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---BC---S
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---cC---C
Confidence 589999999999999999888777664 58899999999999999999999999999999887665332 22 3
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-------------------CCEEEEEEcCCCCCEEEEE
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-------------------GVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~-------------------~~V~~v~~sp~~~~~l~s~ 580 (590)
..+.+++|+|++.+|++++ ++.|+|||+.+++++..+..+. ..|++++|+| ++.+|++|
T Consensus 603 ~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sg 680 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSG 680 (694)
T ss_dssp SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEE
T ss_pred CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEE
Confidence 5688899999999888876 4569999999999988776432 1378999999 78899999
Q ss_pred eCCCcEEEeC
Q 007757 581 GWDGLIKYWD 590 (590)
Q Consensus 581 g~DG~I~iWD 590 (590)
+.||+|+|||
T Consensus 681 s~Dg~i~iW~ 690 (694)
T 3dm0_A 681 YTDGVIRVWG 690 (694)
T ss_dssp ETTSEEEEEE
T ss_pred cCCCeEEEEe
Confidence 9999999996
No 27
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-37 Score=326.26 Aligned_cols=281 Identities=21% Similarity=0.422 Sum_probs=244.0
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007757 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I 324 (590)
+......+.+...+..++..|..++.|-. ...++++++.+|.+.|++++|+|+ +.+|++|+.|++|
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~-------------~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i 174 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDY-------------ETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTI 174 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEET-------------TTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEC-------------CCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeE
Confidence 33444556666677788888999998843 344567899999999999999999 8999999999999
Q ss_pred EEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC-ceEEEEecCCCCCcEEE
Q 007757 325 KIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILL 403 (590)
Q Consensus 325 ~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~lv 403 (590)
+|||+ ....++.++.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+..+.. +..+.+.++ +.+|+
T Consensus 175 ~iwd~-~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~---g~~l~ 250 (410)
T 1vyh_C 175 KLWDF-QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD---GTLIA 250 (410)
T ss_dssp CEEET-TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT---SSEEE
T ss_pred EEEeC-CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC---CCEEE
Confidence 99999 67889999999999999999999999999999999999999999999988865433 345555543 37899
Q ss_pred EEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC--------------------CCEEEEEeCCCcEEEEECCCCcE
Q 007757 404 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--------------------NRRFVTSSDDKSLRVWEFGIPVV 463 (590)
Q Consensus 404 sg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~--------------------~~~l~s~s~Dg~I~iwdl~~~~~ 463 (590)
+|+.|+.|++||+++++....+..|...|.+++|+|+ +.+|++|+.|+.|++||++++.+
T Consensus 251 s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 251 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence 9999999999999999999999999999999999986 67899999999999999999988
Q ss_pred EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcE
Q 007757 464 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 464 ~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
+..+. .|...|.+++|+|++.+|++++.|+.|++||+.+...+ ..+.+| ...|.+++|+|++.+|++|+.||.|
T Consensus 331 ~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~---~~~~~h--~~~v~~l~~~~~~~~l~sgs~D~~i 404 (410)
T 1vyh_C 331 LMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---KTLNAH--EHFVTSLDFHKTAPYVVTGSVDQTV 404 (410)
T ss_dssp EEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC---EEEECC--SSCEEEEEECSSSSCEEEEETTSEE
T ss_pred EEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE---EEEcCC--CCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 87775 58889999999999999999999999999999876544 345566 4678999999999999999999999
Q ss_pred EEEeCC
Q 007757 544 WFWDWK 549 (590)
Q Consensus 544 ~iwd~~ 549 (590)
+||+++
T Consensus 405 ~vW~~r 410 (410)
T 1vyh_C 405 KVWECR 410 (410)
T ss_dssp EEEC--
T ss_pred EEEeCC
Confidence 999863
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.6e-36 Score=304.52 Aligned_cols=282 Identities=15% Similarity=0.308 Sum_probs=242.9
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC--eeEEEec--cCCCceeEEEEecCCCEEEEEeCCCeEEE
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~--~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
...+|...|++++|+|+ +++|++++ ||.|++|++.... ..+..+. +|...|.+++|+|++++|++++.|+.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34489999999999999 89999999 9999999994322 2333443 79999999999999999999999999999
Q ss_pred EECCCCc--EEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEE
Q 007757 370 WDTETGQ--VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 370 Wd~~t~~--~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s 446 (590)
||+.+++ ....+..+ .....+.+.+++ .++++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDS---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 9999887 44444333 345566777643 68999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEE
Q 007757 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
++.|+.|++||++....+..+. +...+.+++|+|++.+|++++.++.|++|++...... .+..| ...+.+++
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~--~~~v~~~~ 272 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLH--ESCVLSLK 272 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----EECCC--SSCEEEEE
T ss_pred EecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE----EEcCC--ccceeEEE
Confidence 9999999999999988877763 6778999999999999999999999999999876432 23344 56788999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 527 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+| ++.+|++++.||.|++||
T Consensus 273 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEE
Confidence 9999999999999999999999999988554 4888999999999 678999999999999996
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-36 Score=302.23 Aligned_cols=284 Identities=16% Similarity=0.245 Sum_probs=244.1
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCe
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 366 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~ 366 (590)
.+.++++++.+|.+.|++++| |+ +.+|++|+.||.|+|||+ ..+.....+..|...|.+++|+|++++|++++.||.
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSK-DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEE-SSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEEC-CCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence 356788999999999999999 87 899999999999999999 678888899999999999999999999999999999
Q ss_pred EEEEECCCC---cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeC-CCC
Q 007757 367 IKYWDTETG---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNR 442 (590)
Q Consensus 367 I~vWd~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p-~~~ 442 (590)
|++|++... +.+..+.. +...+.++.++ +.++++++.|+.|++|| .++.+..+..|...|.++.|.| ++.
T Consensus 83 i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIG-HQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp EEEEETTCCTTSCC-CEECC-CSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTT
T ss_pred EEEEEeeecCCCCcccchhh-cccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCC
Confidence 999998765 44444433 22233333332 36899999999999999 6778888889999999999998 899
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccce
Q 007757 443 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
+|++++.|+.|++|| .......+...+...+.+++|+|++. |++++.|+.|++||+++...+. .+.+| ...+
T Consensus 157 ~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~---~~~~~--~~~i 228 (313)
T 3odt_A 157 KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR---TYEGH--ESFV 228 (313)
T ss_dssp EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE---EEECC--SSCE
T ss_pred EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh---hhhcC--CceE
Confidence 999999999999999 44555566555888999999999998 9999999999999998875553 34445 4678
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+| ++. +++++.||.|++||
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEE
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEe
Confidence 899999999 588999999999999999999999999999999999999 454 67799999999996
No 30
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=313.39 Aligned_cols=297 Identities=13% Similarity=0.279 Sum_probs=241.5
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEEccCCCeeEE-EeccCCCceeEEEEecC---CCEEEE
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCND---GTKFLT 360 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~---Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fspd---g~~l~s 360 (590)
|..+.+.+.+|...|++++|+|++..++++|+. ||.|+||++ ..++... ...+|...|.+++|+|+ +.+|++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI-QHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEE-CSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeC-CCCcccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 334556778999999999999994456667776 999999999 4554443 34479999999999998 699999
Q ss_pred EeCCCeEEEEECCCCc-EEEEccCC-CCceEEEEec---CCCCCcEEEEEEcCCcEEEEECCCCc-eEEEEcccCC----
Q 007757 361 ASYDKNIKYWDTETGQ-VIRTFSTG-KIPYVVKLNP---DDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLG---- 430 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~-~~~~~~~~-~~~~~~~~~~---~~~~~~~lvsg~~dg~I~vwDl~t~~-~~~~~~~h~~---- 430 (590)
|+.||.|++||+.+++ .+..+..+ ..+.++.+.+ ....+.+|++|+.|+.|++||++++. .+..+..|.+
T Consensus 86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 9999999999999987 66666543 3445555542 12345789999999999999999987 7788876655
Q ss_pred ceeEEE----EeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC---CCCEEEEEEcCCeEEEEEccC
Q 007757 431 AVNTIT----FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP---NTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 431 ~V~~i~----~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp---~g~~l~s~s~dg~I~iwd~~~ 503 (590)
.|.++. |++++++|++++.|+.|++||++........ .+...+.+++|+| ++.+|++++.||.|++||+++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 789998 6789999999999999999999998875543 4778999999999 999999999999999999987
Q ss_pred ceeecccc--cccCcccccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-------------------eEEEEEecCC
Q 007757 504 RFQLNKKK--RFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSC-------------------KVFRTLKCHE 561 (590)
Q Consensus 504 ~~~~~~~~--~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~-------------------~~~~~l~~h~ 561 (590)
........ .+.+| ...+.+++|+|+++ +|++|+.||.|++||+.++ +++..+..|.
T Consensus 244 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 244 QHPTKGFASVSEKAH--KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EETTTEEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred CCcccceeeeccCCC--cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 65443322 22245 56789999999999 8999999999999998753 5678889999
Q ss_pred CCEEEEEEcCCCCCEEE-EEeCCCcEEEeC
Q 007757 562 GVCIGCEWHPLEQSKVA-TCGWDGLIKYWD 590 (590)
Q Consensus 562 ~~V~~v~~sp~~~~~l~-s~g~DG~I~iWD 590 (590)
..|.+++|+| ++.+|+ +++.||.|+|||
T Consensus 322 ~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 322 QPISSLDWSP-DKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp SCEEEEEECS-SSTTEEEEEETTSEEEEEE
T ss_pred CCeeEEEEcC-CCCeEEEEecCCCcEEEEE
Confidence 9999999999 555666 899999999997
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.8e-36 Score=306.32 Aligned_cols=249 Identities=20% Similarity=0.353 Sum_probs=220.0
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEE
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
...+++.+|...|++++|+|++++|++++.||.|+|||+.++..+..+..+. ....+.|.+++ ++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG---TEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC---CEEEEECCCCEEE
Confidence 4567889999999999999999999999999999999999999988887654 45677787754 6899999999999
Q ss_pred EEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC-CCCEEEEEE
Q 007757 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQS 491 (590)
Q Consensus 413 vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~s~s 491 (590)
+||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||++...........|...|.+++|+| ++.+|++++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999887666655667999999999999 678999999
Q ss_pred cCCeEEEEEccCceeecccccccCcccccceEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEE
Q 007757 492 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
.|+.|++||++........ ..++ ...+..+.|+| ++.+|++|+.||.|++||+.+++++.++.+|...|.+++|
T Consensus 161 ~D~~v~iwd~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTL--TTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp TTSEEEEEETTCSSCSEEE--ECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred CCCeEEEEECCCCCcccee--ccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 9999999999765433221 1222 24466778876 7889999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEeC
Q 007757 570 HPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 570 sp~~~~~l~s~g~DG~I~iWD 590 (590)
+| ++.+|++|+.||+|+|||
T Consensus 237 ~p-~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 237 HP-TLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp CS-SSSEEEEEETTSCEEEEE
T ss_pred CC-CCCEEEEEcCCCeEEEEE
Confidence 99 677999999999999997
No 32
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-36 Score=306.27 Aligned_cols=272 Identities=18% Similarity=0.318 Sum_probs=240.2
Q ss_pred ceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCee
Q 007757 256 STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC 335 (590)
Q Consensus 256 s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~ 335 (590)
..+..+++.|...|.|-..... ..+..++.+|...|.+++|+|+ +.++++|+.|++|+|||+ ..+++
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~-----------~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~-~~~~~ 114 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDER-----------LDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDL-ENGKQ 114 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEE
T ss_pred CCEEEEEcCCCCEEEEECCCCC-----------eeeeeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCE
Confidence 4567888999999999543211 1345678999999999999999 899999999999999999 68889
Q ss_pred EEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEE
Q 007757 336 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vw 414 (590)
+..+..|...+.+++|+|++++|++++.||.|++|++++++....+... ..+..++++|++ .+|++|+.|+.|++|
T Consensus 115 ~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~lasg~~dg~i~iw 191 (321)
T 3ow8_A 115 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG---KYLASGAIDGIINIF 191 (321)
T ss_dssp EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEEE
T ss_pred EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC---CEEEEEcCCCeEEEE
Confidence 9999999999999999999999999999999999999999988777654 345677777754 689999999999999
Q ss_pred ECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC
Q 007757 415 DMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494 (590)
Q Consensus 415 Dl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg 494 (590)
|+++++.+..+.+|..+|.+++|+|++++|++++.|+.|++||++.......+. .|...|.+++|+|++.+|++++.|+
T Consensus 192 d~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp ETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999888877664 5888999999999999999999999
Q ss_pred eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.|++||+.++..+. .+.+| ...|.+++|+|+|++|++++.||.|+|||..
T Consensus 271 ~v~iwd~~~~~~~~---~~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 271 SVKVWDVGTRTCVH---TFFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEETTTTEEEE---EECCC--SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cEEEEeCCCCEEEE---EEcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999998876553 34455 4678899999999999999999999999963
No 33
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-36 Score=313.68 Aligned_cols=284 Identities=15% Similarity=0.186 Sum_probs=239.9
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe--eEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEEC
Q 007757 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 295 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
+..|..+|++++|+|+ +++|++|+.|+.|+|||+ ..++ .+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 4 ~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEE-ETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred ecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeC-CCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 4569999999999999 999999999999999999 4555 88889999999999999999999999999999999999
Q ss_pred CCCcEEEEcc---CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce---EEEE-cccCCceeEEEEeCCCCEEE
Q 007757 373 ETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---TQEY-DQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 373 ~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~---~~~~-~~h~~~V~~i~~~p~~~~l~ 445 (590)
.+++....+. ....+.++.+.+++ .+|++++.|+.|++||++.+.. ...+ ..|...|.+++|+|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTS---SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCC---CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 9988655443 34455667777653 6899999999999999998763 3333 67899999999999999999
Q ss_pred EEeCCCcEEEEECC------------------CCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceee
Q 007757 446 TSSDDKSLRVWEFG------------------IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 446 s~s~Dg~I~iwdl~------------------~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 507 (590)
+++.|+.|++||++ ....+..+. .|...|.+++|+|++.+|++++.|+.|++||+++...+
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 99999999999964 455666554 58889999999999999999999999999999877654
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeE--E-----------------------------
Q 007757 508 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKV--F----------------------------- 554 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--~~~--~----------------------------- 554 (590)
. .+..| ...+.+++|+|++++|++| .||.|++|++.+ +.. +
T Consensus 238 ~---~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
T 1k8k_C 238 A---TLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 311 (372)
T ss_dssp E---EEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred E---EEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence 3 33444 4568899999999999888 899999999987 421 0
Q ss_pred -------EEE-ecCCCCEEEEEEcCCCC---CEEEEEeCCCcEEEeC
Q 007757 555 -------RTL-KCHEGVCIGCEWHPLEQ---SKVATCGWDGLIKYWD 590 (590)
Q Consensus 555 -------~~l-~~h~~~V~~v~~sp~~~---~~l~s~g~DG~I~iWD 590 (590)
..+ .+|...|++++|++.++ .+|+||+.||.|+|||
T Consensus 312 ~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 312 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 223 38999999999886566 8999999999999996
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.2e-36 Score=306.61 Aligned_cols=296 Identities=21% Similarity=0.389 Sum_probs=239.8
Q ss_pred ccCCCCCCcccCCc-ceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeC
Q 007757 242 GNAGGEKGEHVEDK-STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 320 (590)
Q Consensus 242 ~~~~~~~~~~~~~~-s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~ 320 (590)
++.+......+.+. ..++.+++.|...|.|-....+. .....++++.+|...|++++|+|+ +.+|++|+.
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~ 85 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--------KFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASW 85 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT--------EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEET
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc--------cccccceEEeCCcccEEEEEECCC-CCEEEEEeC
Confidence 34444444555543 35778889999999996532211 113457889999999999999999 999999999
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEcc-CCCCceEEEEecCCC--
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDD-- 397 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~-~~~~~~~~~~~~~~~-- 397 (590)
|++|+|||+ ..++++..+.+|...|.+++|+|++.+|++|+.|+.|++||++.. ++..+. ....+..+.+.+...
T Consensus 86 D~~v~~wd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 86 DKTLRLWDV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp TSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECCC----
T ss_pred CCEEEEEEC-CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEccCCCCC
Confidence 999999999 688999999999999999999999999999999999999999754 444443 334456677766432
Q ss_pred -CCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCccc
Q 007757 398 -KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 476 (590)
Q Consensus 398 -~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~ 476 (590)
...++++++.|+.|++||+++.+....+.+|...|++++|+|++++|++++.||.|++||+.....+..+. ....|.
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~ 241 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVF 241 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEE
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEE
Confidence 34589999999999999999999999999999999999999999999999999999999999998887775 346899
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccc-ccC--cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-FAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 477 ~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~--~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
+++|+|++.+|++++. +.|++|++........... +.+ ......+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 242 ~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 242 SLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999999999998775 5599999987554432221 111 112456788999999999999999999999998664
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.7e-36 Score=311.48 Aligned_cols=290 Identities=17% Similarity=0.261 Sum_probs=240.4
Q ss_pred EEecCCCCCeeEEEEcCC---CCCEEEEEeCCCcEEEEEccCCCeeEEEecc-----CCCceeEEEEecC----CCEEEE
Q 007757 293 HTWSGHTKGVSAIRFFPK---YGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-----HSKAVRDISFCND----GTKFLT 360 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~---~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-----h~~~V~~l~fspd----g~~l~s 360 (590)
....+|.+.|++|+|+|+ +..++++++.++.|+||++ ..+..+..+.. |...|++++|+|+ +.+|++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYEC-HSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEE-CGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEc-CCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 345599999999999984 4567777777889999999 55666655553 5678999999998 679999
Q ss_pred EeCCCeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE---cccCCceeEEE
Q 007757 361 ASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTIT 436 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~---~~h~~~V~~i~ 436 (590)
|+.||.|++||+.+++.+..+.. ...+.++.|++. .+.+|++|+.||.|++||+++++.+..+ ..|...|.+++
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 99999999999999999988873 445667777762 3378999999999999999999999988 78999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEe---------------------------ecCCCCcccEEEEcCCCCEEEE
Q 007757 437 FVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI---------------------------SEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~---------------------------~~~~~~~i~~i~~sp~g~~l~s 489 (590)
|+|++++|++++.||.|++||++.......+ ...|...|.+++|+ +.+|++
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 246 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILS 246 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEE
Confidence 9999999999999999999999865433211 12378889999998 779999
Q ss_pred EEcCCeEEEEEccCceee-----------cccccccCcccccceEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCe----
Q 007757 490 QSLDNQILIYSTRERFQL-----------NKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWKSCK---- 552 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~v~~spd--g~~l~sgs~dg~I~iwd~~t~~---- 552 (590)
++.|+.|++||+...... .....+.+| ...+.+++|+|+ +++|++|+.||.|++||+.+++
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 999999999999775431 112333344 345777899999 9999999999999999999875
Q ss_pred EEEEEecC--CCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 553 VFRTLKCH--EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 553 ~~~~l~~h--~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
....+..| ...|.+++|+| ++.+|++++.||.|+|||
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWD 363 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred cceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEE
Confidence 45577877 68999999999 788999999999999997
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.9e-35 Score=303.78 Aligned_cols=283 Identities=22% Similarity=0.323 Sum_probs=242.0
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007757 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~D 321 (590)
++.+......+.+...+..++..|...|.|-. ...+.++.+..|...|.+++|+|+ +.+|++|+.|
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~-------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d 118 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS-------------YTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLD 118 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEET-------------TTCCEEEEEECSSSCEEEEEECTT-SSEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEEC-------------CCCCcceEeecCCccEEEEEECCC-CCEEEEEeCC
Confidence 34445555666777778888999999999943 234567889999999999999999 9999999999
Q ss_pred CcEEEEEccCCC---eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCC
Q 007757 322 TKVKIWDVVNSG---KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDD 397 (590)
Q Consensus 322 g~I~iWd~~~~~---~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~ 397 (590)
+.|++|++.... .....+.+|...|.++.|++++. |++++.|+.|++||+.+++.+..+..+ ..+.++.+.+++
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~- 196 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT- 196 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-
Confidence 999999994322 46677889999999999998765 899999999999999999999888654 345667777643
Q ss_pred CCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCccc
Q 007757 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMP 476 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~ 476 (590)
.++++|+.|+.|++||++++..+..+.+|...|++++|+|++++|++++.|++|++||++....+..+.. .+...|.
T Consensus 197 --~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 197 --RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp --SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred --CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence 6899999999999999999999999999999999999999999999999999999999998877766542 2334799
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 477 ~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
+++|+|++.+|++++.|+.|++||+.+.... ..+.+| ...|.+++|+|+|.+|++|+.||.|+|||
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRA---GVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCCEEEEECCCCeEEEEEcccCcEe---eEeecC--CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999876544 345666 56799999999999999999999999997
No 37
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-37 Score=320.21 Aligned_cols=287 Identities=13% Similarity=0.156 Sum_probs=223.6
Q ss_pred EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC--eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 294 ~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
.+..|.++|++++|+|+ +++|++|+.|+.|+||++. .+ +++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 6 ~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQD-GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEE-TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEcc-CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34457789999999999 8999999999999999994 55 77888999999999999999999999999999999999
Q ss_pred CCCCc---EEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc---eEEEEcc-cCCceeEEEEeCCCCE
Q 007757 372 TETGQ---VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQ-HLGAVNTITFVDSNRR 443 (590)
Q Consensus 372 ~~t~~---~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~---~~~~~~~-h~~~V~~i~~~p~~~~ 443 (590)
+.++. ....+. ....+.++.|++++ .+|++|+.|+.|++||+++++ ....+.. |...|++++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNE---DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTS---SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCC---CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 99887 444443 34455666776643 679999999999999999887 4777877 9999999999999999
Q ss_pred EEEEeCCCcEEEEECCC------------------CcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce
Q 007757 444 FVTSSDDKSLRVWEFGI------------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~------------------~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~ 505 (590)
|++++.|+.|++||+.. ...+..+ .|...|.+++|+|++++|++++.|+.|++||+.+..
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 99999999999999852 3344444 688899999999999999999999999999998865
Q ss_pred eec-ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------------------------------EE
Q 007757 506 QLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK------------------------------VF 554 (590)
Q Consensus 506 ~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~------------------------------~~ 554 (590)
... ....+.+| ...+.+++|+|+|++|++|+.++.+ +|+..... .+
T Consensus 239 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (377)
T 3dwl_C 239 QPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV 315 (377)
T ss_dssp SCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred CcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence 411 13445555 4678899999999999999877665 66554111 00
Q ss_pred ------EEEe----------------cCCCCEEEEEEcCCCCC---EEEEEeCCCcEEEeC
Q 007757 555 ------RTLK----------------CHEGVCIGCEWHPLEQS---KVATCGWDGLIKYWD 590 (590)
Q Consensus 555 ------~~l~----------------~h~~~V~~v~~sp~~~~---~l~s~g~DG~I~iWD 590 (590)
..+. .|.+.|+++++.+.+.. .|+|||.||.|+|||
T Consensus 316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 1111 28999999998774444 699999999999998
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9e-37 Score=325.95 Aligned_cols=296 Identities=13% Similarity=0.188 Sum_probs=229.3
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC-eeEEEeccCCCceeEEEEec-CCCEEEEEeCCCe
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 366 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~-~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~ 366 (590)
.++.....+|...|+||+|+|.++++||+|+.||.|+|||+.... ..+..+.+|...|++|+|+| ++.+|++|+.||+
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 355567789999999999999768899999999999999994322 34455678999999999998 7899999999999
Q ss_pred EEEEECCCCcEEEEccCCC---CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCC-
Q 007757 367 IKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR- 442 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~- 442 (590)
|+|||++++.......... ...++.+.+++ .+|++|+.||.|++||++. +.+..+.+|...|++++|+|++.
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS---RMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT---TEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSS
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCC---CEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCce
Confidence 9999998765544333222 23456676654 6899999999999999975 45667789999999999999876
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe--ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccC-cccc
Q 007757 443 RFVTSSDDKSLRVWEFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG-HIVA 519 (590)
Q Consensus 443 ~l~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~ 519 (590)
+|++++.|+.|+|||++.......+ ...|...|.+++|+|++.+|++++.||.|++||+.+............ +...
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence 7889999999999999876543322 235788999999999999999999999999999987654432221111 0011
Q ss_pred cceEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCCeEEEEEe-cCCCCEEEE-EEcCCCCCEEEEEeCCCc
Q 007757 520 GYACQVNFSPDGRFVMSGD------------GEGKCWFWDWKSCKVFRTLK-CHEGVCIGC-EWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs------------~dg~I~iwd~~t~~~~~~l~-~h~~~V~~v-~~sp~~~~~l~s~g~DG~ 585 (590)
..+..+.|+|++.+++++. .++.|++||..+++++..+. .|...|.++ +|+| ++.+|++|+ |+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~ 422 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYH 422 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSE
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCc
Confidence 1223355666666665553 34579999999999998875 577788887 6999 677888876 889
Q ss_pred EEEeC
Q 007757 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|+|||
T Consensus 423 i~iW~ 427 (435)
T 4e54_B 423 ILIWS 427 (435)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99997
No 39
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=303.67 Aligned_cols=301 Identities=17% Similarity=0.266 Sum_probs=251.5
Q ss_pred CccCCcceeEEecCCCCCeeEEEEcCCC--CCEEEEEeCCCcEEEEEccCCCeeE-EEeccCCCceeEEEEecCCCEEEE
Q 007757 284 HCYIPKRLVHTWSGHTKGVSAIRFFPKY--GHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 284 ~~~~p~~~v~~l~gH~~~V~~l~fsp~~--g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
+...|.+.+..+.+|.+.|++|+|+|+. +.+|++|+.||.|+|||+...+..+ ..+.+|...|++++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 4556788899999999999999999995 6999999999999999995435444 788899999999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC
Q 007757 361 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
++.||.|++||+.+++.+........+.++.|.+..+ +.+|++++.|+.|++||+++++.+..+..+. .+.++.+.
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-- 179 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI-- 179 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--
T ss_pred EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--
Confidence 9999999999999999988777777788888854433 3789999999999999999999998887664 56666665
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcCCCCE----EEEEEcCCeEEEEEccCceeecccccccC
Q 007757 441 NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNW----LAAQSLDNQILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~----l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 515 (590)
...+++++.++.+++|+++..... ..+.......+.++++.++... +++++.|+.|++|+++..........+.+
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 458889999999999999876443 3344455666777777776654 99999999999999987644334445555
Q ss_pred cccc----------cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 007757 516 HIVA----------GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 516 ~~~~----------~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
|... ..+.+++|+|++++|++|+.||.|++||+.+++++..+..|...|.+++|+| ++.+|++++.|+.
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW 338 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence 5321 1689999999999999999999999999999999999999999999999999 7789999998876
Q ss_pred EEEe
Q 007757 586 IKYW 589 (590)
Q Consensus 586 I~iW 589 (590)
.+.|
T Consensus 339 ~~~~ 342 (368)
T 3mmy_A 339 SKGH 342 (368)
T ss_dssp TTCG
T ss_pred cccc
Confidence 5443
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=321.02 Aligned_cols=308 Identities=13% Similarity=0.205 Sum_probs=251.5
Q ss_pred ccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC---CCeeEEEe
Q 007757 263 ETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN---SGKCMRTY 339 (590)
Q Consensus 263 ~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~---~~~~~~~~ 339 (590)
..|...|.|-....... +++..+ .|...|++++|+|+ +.+|++|+.||.|+||++.. ....+..+
T Consensus 42 ~~d~~v~iw~~~~~~~~----------~~~~~~-~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~ 109 (416)
T 2pm9_A 42 STDSSLELWSLLAADSE----------KPIASL-QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARF 109 (416)
T ss_dssp CCCCCCEEEESSSGGGC----------SCSCCC-CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEEC
T ss_pred CCCCeEEEEEccCCCCC----------cEEEEE-ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhc
Confidence 67888999965433211 122233 58999999999999 89999999999999999943 14588889
Q ss_pred ccCCCceeEEEEecC-CCEEEEEeCCCeEEEEECCCCc------EEEEc----cCCCCceEEEEecCCCCCcEEEEEEcC
Q 007757 340 MGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ------VIRTF----STGKIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 340 ~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~------~~~~~----~~~~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
.+|...|++++|+|+ +++|++++.|+.|++||+.+++ ....+ .....+.++.|.++. ..+|++++.|
T Consensus 110 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d 187 (416)
T 2pm9_A 110 SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--AHVFASAGSS 187 (416)
T ss_dssp CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC--TTEEEEESSS
T ss_pred cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC--CcEEEEEcCC
Confidence 999999999999998 8999999999999999999886 33222 233455677777653 4789999999
Q ss_pred CcEEEEECCCCceEEEEccc------CCceeEEEEeCCC-CEEEEEeCCC---cEEEEECCCC-cEEEEeecCCCCcccE
Q 007757 409 KKIVQWDMNTKEITQEYDQH------LGAVNTITFVDSN-RRFVTSSDDK---SLRVWEFGIP-VVIKYISEPHMHSMPS 477 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h------~~~V~~i~~~p~~-~~l~s~s~Dg---~I~iwdl~~~-~~~~~~~~~~~~~i~~ 477 (590)
+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++.|+ .|++||++.. ..+..+...|...|.+
T Consensus 188 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267 (416)
T ss_dssp SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE
T ss_pred CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE
Confidence 99999999999999998876 7899999999997 6899999998 9999999886 3444433268889999
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEE
Q 007757 478 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 478 i~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg-~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
++|+| ++.+|++++.|+.|++||+.+...+. .+.+| ...+.+++|+|++ .+|++++.||.|+|||+.++....
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~---~~~~~--~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS---QFPAR--GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCEEE---EEECS--SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCccce---eecCC--CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 99999 89999999999999999998875543 34445 4567789999999 899999999999999998765322
Q ss_pred EEe-----------------------------------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 556 TLK-----------------------------------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 556 ~l~-----------------------------------~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
... .|..++.+++|+| ++.+|++++.||.|+|||
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 343 DEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITN 411 (416)
T ss_dssp CC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBC
T ss_pred ccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEE
Confidence 111 1566788999999 788999999999999997
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9e-35 Score=302.03 Aligned_cols=286 Identities=22% Similarity=0.332 Sum_probs=245.0
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007757 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~D 321 (590)
++.+......+.+...+..+++.|...|.|-. .+.+..+.+..|...|.+++|+|+ +.+|++|+.|
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~-------------~~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d 127 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-------------FTTNKEHAVTMPCTWVMACAYAPS-GCAIACGGLD 127 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-------------TTCCEEEEEECSSSCCCEEEECTT-SSEEEEESTT
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEEC-------------CCCCcceEEecCCCCEEEEEECCC-CCEEEEeeCC
Confidence 45555666667777778899999999999943 344567788899999999999999 9999999999
Q ss_pred CcEEEEEccCC-----CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCC-CceEEEEecC
Q 007757 322 TKVKIWDVVNS-----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPD 395 (590)
Q Consensus 322 g~I~iWd~~~~-----~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~ 395 (590)
+.|++|++... ......+.+|...|.+++|+|++..|++++.|++|++||+++++++..+..+. .+.++.+.+.
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence 99999998422 13556778899999999999999999999999999999999999998887543 4556777765
Q ss_pred CCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCc
Q 007757 396 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHS 474 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~ 474 (590)
.. +++|++|+.||.|++||+++++++..+..|...|++++|+|++.+|++++.|++|++||++....+..+.. .+...
T Consensus 208 ~~-g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 208 ET-GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp SS-CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred CC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 42 47899999999999999999999999999999999999999999999999999999999998877665543 23346
Q ss_pred ccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 475 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 475 i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
+.+++|+|++.+|++++.|+.|++||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||.|+||+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~l~~h--~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV---SILFGH--ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEE---EEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceE---EEEECC--CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 889999999999999999999999999876554 345566 56799999999999999999999999996
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.8e-36 Score=313.98 Aligned_cols=295 Identities=21% Similarity=0.360 Sum_probs=244.0
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007757 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~D 321 (590)
++.+......+.+...+..+++.|...|.|-. ...+.++++.+|...|.+++|+|+ +++|++|+.|
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~-------------~~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d 129 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA-------------LTSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLD 129 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEET-------------TTTEEEEEEECCCTTCCCCEECTT-SSEEEECCSS
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEEC-------------CCCccceEEecCCCCEEEEEECCC-CCEEEEeeCC
Confidence 45555566667777778889999999999943 344677899999999999999999 9999999999
Q ss_pred CcEEEEEccCC------CeeEEEeccCCCceeEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEcc----CCCCceEE
Q 007757 322 TKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFS----TGKIPYVV 390 (590)
Q Consensus 322 g~I~iWd~~~~------~~~~~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~~~~~~----~~~~~~~~ 390 (590)
+.|+||++... ......+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++.+..+. .++...+.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 99999998421 1245668899999999999996 5679999999999999999999988763 23444444
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECC-CCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~-t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~ 469 (590)
.+...+...++|++|+.|+.|++||++ .+..+..+.+|.+.|++++|+|++.+|++++.|++|++||++++..+..+..
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 444444445899999999999999998 4578889999999999999999999999999999999999999988777643
Q ss_pred CC------CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccc-cCcccccceEEEEEcCCCCEEEEEeCCCc
Q 007757 470 PH------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVAGYACQVNFSPDGRFVMSGDGEGK 542 (590)
Q Consensus 470 ~~------~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~v~~v~~spdg~~l~sgs~dg~ 542 (590)
.. ...+.+++|+|++.+|++|+.||.|++||+............ .+| ...|.+++|+|+|++|++|+.||.
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH--EGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC--CCCCCEEEECSSSSEEEEECTTSC
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC--CCceEEEEECCCCCEEEEeeCCCC
Confidence 21 224899999999999999999999999999876655433222 345 567889999999999999999999
Q ss_pred EEEEeCCCCe
Q 007757 543 CWFWDWKSCK 552 (590)
Q Consensus 543 I~iwd~~t~~ 552 (590)
|+||++...+
T Consensus 368 i~iW~~~~~~ 377 (380)
T 3iz6_a 368 LKIWAFSGHR 377 (380)
T ss_dssp EEEEECCSSS
T ss_pred EEEEecCCCc
Confidence 9999987654
No 43
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=289.54 Aligned_cols=291 Identities=16% Similarity=0.305 Sum_probs=236.9
Q ss_pred ccCCcceeEEecC--CCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec--cCCCceeEEEEecCCCEE
Q 007757 285 CYIPKRLVHTWSG--HTK--GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFCNDGTKF 358 (590)
Q Consensus 285 ~~~p~~~v~~l~g--H~~--~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fspdg~~l 358 (590)
.++|..+.+.|.+ ... .+++|+|+++ ++|++| .|++|+|||+ .+++++..+. +|...|++++|+|++++|
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~--~~lAvg-~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSG--NVLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTT--SEEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCC--CEEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 3566666666653 222 3578999987 377665 5999999999 6788777664 678889999999999999
Q ss_pred EEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEE
Q 007757 359 LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITF 437 (590)
Q Consensus 359 ~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~ 437 (590)
++|+.||.|++||+++++++..+..+. ..+..+.+.+ .++++|+.++.+++|+.... ..+..+.+|...+.++.+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~-~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHS-ARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCcEEEeecCCceeEEEecCcc-ceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 999999999999999999998886543 3445555543 68999999999999999876 566778899999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEE---EEeecCCCCcccEEEEcCCCCEE---EEEEcCCeEEEEEccCceeecccc
Q 007757 438 VDSNRRFVTSSDDKSLRVWEFGIPVVI---KYISEPHMHSMPSISLHPNTNWL---AAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~~~~~---~~~~~~~~~~i~~i~~sp~g~~l---~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
.+++++|++++.|+.|++||+++.... ......+...|.++.++|.+..+ ++++.++.|++|+...........
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence 999999999999999999999865421 22233577789999999976533 355678999999998765442211
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 512 RFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
....+..+.|+|++..+++++ .||.|+|||+.+++++.++.+|.+.|++++|+| ++.+|+|||.||+|+||
T Consensus 239 ------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 239 ------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLW 311 (318)
T ss_dssp ------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEE
T ss_pred ------ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEE
Confidence 135577899999999887654 799999999999999999999999999999999 67899999999999999
Q ss_pred C
Q 007757 590 D 590 (590)
Q Consensus 590 D 590 (590)
|
T Consensus 312 d 312 (318)
T 4ggc_A 312 R 312 (318)
T ss_dssp C
T ss_pred E
Confidence 7
No 44
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=301.47 Aligned_cols=288 Identities=15% Similarity=0.262 Sum_probs=220.8
Q ss_pred cccCCcceeecccccccccceeecCCCccccCCCCccCC-cceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 007757 250 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIP-KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p-~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd 328 (590)
..+.+...++.... |..+|.|-...... ......+ .........|..+|++++|+|+ ..|++|+.||+|+|||
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLF---KDPCAAPNEGFCSAGVQTEAGVADLTWVGE--RGILVASDSGAVELWE 109 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEE---SSGGGTTCGGGCSEEEEESSCEEEEEEETT--TEEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeee---ccccccCCcceeeeeeccCCCEEEEEEeCC--CeEEEEECCCEEEEEe
Confidence 34555555555444 77888883211000 0000011 1122233457788999999998 4788999999999999
Q ss_pred ccCCCeeEE----EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEE
Q 007757 329 VVNSGKCMR----TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 329 ~~~~~~~~~----~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lv 403 (590)
+ ..++.+. .+.+|...|++|+|+|+|++|++|+.|++|++||+.+++++..+..+ ..+.++.|++++ ..+|+
T Consensus 110 ~-~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~--~~~l~ 186 (344)
T 4gqb_B 110 L-DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK--DSVFL 186 (344)
T ss_dssp E-CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC--TTEEE
T ss_pred c-cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC--CCcee
Confidence 9 4554433 34589999999999999999999999999999999999999988754 345566676654 36899
Q ss_pred EEEcCCcEEEEECCCCceEEEEc--ccCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEE
Q 007757 404 AGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 404 sg~~dg~I~vwDl~t~~~~~~~~--~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
+|+.|+.|++||+++++....+. .|...+++++|+|+ +++|++|+.||+|++||+++...+..+. .|...|.+++|
T Consensus 187 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~f 265 (344)
T 4gqb_B 187 SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVF 265 (344)
T ss_dssp EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEE
T ss_pred eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEE
Confidence 99999999999999999887764 45567999999985 5688999999999999999988887775 58899999999
Q ss_pred cCCC-CEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeE
Q 007757 481 HPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 481 sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~~ 553 (590)
+|++ .+|++++.|+.|+|||+.++... .+.+| ...|.+++|+|+++ +|++|+.||+|++|++.+..+
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~~~----~~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSELF----RSQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCEEE----EECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCcEE----EEcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 9997 58999999999999999876543 34566 57799999999986 577999999999999987543
No 45
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.1e-34 Score=303.75 Aligned_cols=275 Identities=16% Similarity=0.310 Sum_probs=231.4
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec--cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
.++.|+|+++ ++|++|. |++|+|||+ .+++++..+. +|...|++|+|+|+|++|++|+.||.|+|||+.+++++
T Consensus 107 y~~~l~wS~~--n~lAvgl-d~tV~lWd~-~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSG--NVLAVAL-DNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECTT--SEEEEEE-TTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEEECCC--CEEEEEe-CCEEEEEEC-CCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 4788999976 5777765 999999999 6777776654 67888999999999999999999999999999999999
Q ss_pred EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007757 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
..+..+ ...+.++.+++ .++++|+.|+.+++||.+.. ..+..+.+|...+..+.|++++.++++++.|+.|++|+
T Consensus 183 ~~~~~h-~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 183 RNMTSH-SARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp EEECCC-SSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEeCC-CCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEe
Confidence 888654 44455555543 68999999999999999875 56678889999999999999999999999999999999
Q ss_pred CCCCcE---EEEeecCCCCcccEEEEcCCCC-EEEEE--EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCC
Q 007757 458 FGIPVV---IKYISEPHMHSMPSISLHPNTN-WLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 458 l~~~~~---~~~~~~~~~~~i~~i~~sp~g~-~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
+..... .......+...|.+++|+|.+. +++++ +.|+.|++||+.++....... . ...++++.|+|++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~---~---~~~v~~~~~~~~~ 332 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD---A---HSQVCSILWSPHY 332 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE---C---SSCEEEEEEETTT
T ss_pred eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec---c---ccceeeeeecCCC
Confidence 976542 1122345888999999999754 55543 478999999999876654332 2 2567889999999
Q ss_pred CEEEEEe--CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 532 RFVMSGD--GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 532 ~~l~sgs--~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.|++++ .||.|+|||+.+++++.++.+|.+.|++++|+| ++.+|+|||.||+|+|||
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWR 392 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEEC
T ss_pred CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEE
Confidence 9988765 789999999999999999999999999999999 678999999999999997
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-34 Score=331.65 Aligned_cols=291 Identities=19% Similarity=0.335 Sum_probs=257.3
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
++.+++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ ..+..+..+.+|...|++++|+|++++|++++.||.|++
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 567889999999999999999 999999999999999999 688899999999999999999999999999999999999
Q ss_pred EECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeC-CCCEEEE
Q 007757 370 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-SNRRFVT 446 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p-~~~~l~s 446 (590)
||+.+++.+..+..+ ..+.++.|++++ .+|++|+.||.|++||+.++ .....+..|...|.+++|+| ++..|++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCC---CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 999999999888743 456677777754 57999999999999999987 67788889999999999999 8889999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC--CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEE
Q 007757 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp--~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
++.||.|++||+........+...+...+.+++|+| ++.+|++++.||.|++||+.++..+. .+.+| ...+.+
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~~--~~~v~~ 233 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA---TLEGH--MSNVSF 233 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE---EEECC--SSCEEE
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE---EEcCC--CCCEEE
Confidence 999999999999888777777666668999999999 99999999999999999998876543 34445 466889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++|+|++++|++|+.||.|++||+.+++.+..+..|...+.+++|+|++..++++++.|+.+.+|+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 999999999999999999999999999999999999999999999996555445555566677763
No 47
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.3e-34 Score=317.58 Aligned_cols=314 Identities=18% Similarity=0.295 Sum_probs=254.2
Q ss_pred cccCCcce-eecccccccccceeecCCCccccCCCCccCCcceeEEecCCCC---CeeEEEEcCCCCCEEEEEeCCCcEE
Q 007757 250 EHVEDKST-FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTK---GVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 250 ~~~~~~s~-~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~---~V~~l~fsp~~g~~L~sgs~Dg~I~ 325 (590)
..+.+... +..+...|...+.|- ..+.+++.++.+|.. .|++++|+|+++++|++++.||.|+
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd-------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQ-------------GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEE-------------TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred EEECCCCCcEEEEEeCCCcEEEEe-------------CCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 34444443 456677788888884 234567889999999 9999999998678999999999999
Q ss_pred EEEccCCCeeEEEe-c---cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-----CCceEEEEecCC
Q 007757 326 IWDVVNSGKCMRTY-M---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-----KIPYVVKLNPDD 396 (590)
Q Consensus 326 iWd~~~~~~~~~~~-~---~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-----~~~~~~~~~~~~ 396 (590)
+||+ ..++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++.+..+... .....+.+.
T Consensus 233 vwd~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 307 (615)
T 1pgu_A 233 CFDG-KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--- 307 (615)
T ss_dssp EEET-TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE---
T ss_pred EEEC-CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC---
Confidence 9999 678888888 6 899999999999 9999999999999999999999999888765 223334442
Q ss_pred CCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC---------------------------------C--
Q 007757 397 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---------------------------------N-- 441 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~---------------------------------~-- 441 (590)
.+.++++++.++.|++||+.+++.+..+..|...|++++| |+ +
T Consensus 308 -~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~ 385 (615)
T 1pgu_A 308 -GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 385 (615)
T ss_dssp -ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTC
T ss_pred -CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcE
Confidence 3468999999999999999988888888777666666555 32 3
Q ss_pred -----------------------------------------------------------------------CEEEEEeC-
Q 007757 442 -----------------------------------------------------------------------RRFVTSSD- 449 (590)
Q Consensus 442 -----------------------------------------------------------------------~~l~s~s~- 449 (590)
++|++++.
T Consensus 386 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (615)
T 1pgu_A 386 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE 465 (615)
T ss_dssp CEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecC
Confidence 34444444
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccC-cccccceEEEEEc
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG-HIVAGYACQVNFS 528 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~v~~s 528 (590)
|+.|++||+............|...|.+++|+|++++|++++.|+.|++|++.+...+.. +.+ | ...+.+++|+
T Consensus 466 d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~h--~~~v~~~~~s 540 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAFR--TSKINAISWK 540 (615)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCCC--SSCEEEEEEC
T ss_pred CCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE---eecCC--CCceeEEEEc
Confidence 555555555544333223345788899999999999999999999999999988766533 333 4 5678999999
Q ss_pred C----------CCCEEEEEeCCCcEEEEeCCCC-eEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 529 P----------DGRFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 p----------dg~~l~sgs~dg~I~iwd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
| ++++|++|+.||.|++||+.++ +++..+.+|...|.+++|+| ++. |++++.||.|++||
T Consensus 541 p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWN 611 (615)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEE
T ss_pred CccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEe
Confidence 9 9999999999999999999998 88899999999999999999 555 99999999999996
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-34 Score=303.31 Aligned_cols=280 Identities=15% Similarity=0.293 Sum_probs=233.8
Q ss_pred EecCCCCCee--EEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc-CCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 294 TWSGHTKGVS--AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 294 ~l~gH~~~V~--~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
...+|...+. ++.|++ ..+++++.|+.|+||++ ..+.....+.. |...|.+++|+|++++|++|+.||.|++|
T Consensus 86 ~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp ECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEET-TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeC-CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 3447776654 455554 45778889999999999 56777666655 89999999999999999999999999999
Q ss_pred ECCCCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEECC-CCceEEEEcccCCceeEEEEeCCCCEEEEEe
Q 007757 371 DTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 371 d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~-t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
|+.+++.+..+..+. .+.++.+ + +.++++|+.||.|++||++ ....+..+..|.+.|.+++|+|++.+|++++
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW--N---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE--E---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ECcCCeEEEEecCCCCceEEEEE--C---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 999999988886432 3344444 2 2689999999999999999 5677888899999999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCC-EEEEEE--cCCeEEEEEccCceeecccccccCcccccceEEE
Q 007757 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
.|+.|++||++....+..+. .|...|.+++|+|++. ++++++ .|+.|++||+.++..+.... . ...+.++
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~---~~~v~~~ 309 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---A---GSQVTSL 309 (401)
T ss_dssp TTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---C---SSCEEEE
T ss_pred CCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---C---CCcEEEE
Confidence 99999999999988877764 5888999999999765 555554 69999999998876554332 1 3568899
Q ss_pred EEcCCCCEEEE--EeCCCcEEEEeCCCCeEEE--EEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 526 NFSPDGRFVMS--GDGEGKCWFWDWKSCKVFR--TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 526 ~~spdg~~l~s--gs~dg~I~iwd~~t~~~~~--~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+|+|++++|++ |+.||.|++||+.+++... .+.+|...|.+++|+| ++.+|++++.||.|++||
T Consensus 310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFWR 377 (401)
T ss_dssp EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEEEE
T ss_pred EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEE
Confidence 99999999999 5589999999999976554 4678999999999999 778999999999999996
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.8e-35 Score=310.22 Aligned_cols=317 Identities=12% Similarity=0.103 Sum_probs=254.0
Q ss_pred cccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEc
Q 007757 250 EHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~ 329 (590)
..+.+...+..+...|...+.|-..... ....+.+| ..+....|+|+ +++|++|+.||.|+|||+
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~-------------~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~ 126 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRD-------------GSKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDS 126 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEE-------------TTTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECT
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccc-------------eeeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeC
Confidence 4556666667777888888888543322 12233355 33445567777 899999999999999999
Q ss_pred cCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcC
Q 007757 330 VNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 330 ~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
..+.+...+.+|...|++++|+|++++|++|+.|+.|++||+.+++.+..+..+ ..+.++.|++++ .+|++++.|
T Consensus 127 -~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d 202 (420)
T 3vl1_A 127 -NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG---RNVLSASLD 202 (420)
T ss_dssp -TSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---TEEEEEETT
T ss_pred -CCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---CEEEEEcCC
Confidence 578888888899999999999999999999999999999999999988887643 456677887754 689999999
Q ss_pred CcEEEEECCCCceEEEEcc---cCCceeE---------------------EEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 007757 409 KKIVQWDMNTKEITQEYDQ---HLGAVNT---------------------ITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 464 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~---h~~~V~~---------------------i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~ 464 (590)
+.|++||+++++.+..+.. |...|.+ ++|+|++++|++++.||.|++||++....+
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 9999999999999988875 3344444 445788999999999999999999999888
Q ss_pred EEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcE
Q 007757 465 KYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
..+...|...|.+++|+|++. +|++++.||.|++||+++.... ...+.++. ...+..+ +++++++|++++.||.|
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~-~~~v~~~-~~~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--VGEFLINE-GTPINNV-YFAAGALFVSSGFDTSI 358 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--SEEEEEST-TSCEEEE-EEETTEEEEEETTTEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--hhhhhccC-CCCceEE-EeCCCCEEEEecCCccE
Confidence 888777888999999999998 9999999999999999876432 22333321 3456666 45578899999999999
Q ss_pred EEEeCCCC---------eEEEEEecCCCCEEEEEEcCCCCC---EEEEEeCCCcEEEeC
Q 007757 544 WFWDWKSC---------KVFRTLKCHEGVCIGCEWHPLEQS---KVATCGWDGLIKYWD 590 (590)
Q Consensus 544 ~iwd~~t~---------~~~~~l~~h~~~V~~v~~sp~~~~---~l~s~g~DG~I~iWD 590 (590)
++|++... .....+..|.+.|.+++|+| ++. .|+++|.+|.+.+|+
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEE
T ss_pred EEEeccCCCCCccceeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEe
Confidence 99998763 22334667889999999999 555 677788899999995
No 50
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-34 Score=301.56 Aligned_cols=281 Identities=14% Similarity=0.249 Sum_probs=238.2
Q ss_pred cCCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEEc----cCCCe-----eEEEecc----------CCCceeEEEEecCC
Q 007757 296 SGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDV----VNSGK-----CMRTYMG----------HSKAVRDISFCNDG 355 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~-~L~sgs~Dg~I~iWd~----~~~~~-----~~~~~~~----------h~~~V~~l~fspdg 355 (590)
..|.+.|++++|+|+ +. +|++|+.||.|+||++ ..... ....+.. |...|++++|+|++
T Consensus 42 ~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 356699999999999 77 9999999999999999 53331 3444444 68899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCc---
Q 007757 356 TKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA--- 431 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~--- 431 (590)
++|++++.||.|++|| .+++.+..+.. ...+..+.|.+++ .+|++++.|+.|++||+.+++.+..+..+...
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG---THIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS---SEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC---CEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 9999999999999999 66777777654 3455677777644 68999999999999999999999999888777
Q ss_pred ------------eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007757 432 ------------VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 432 ------------V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iw 499 (590)
+.++.|++++ .+++++.++.|++||+.....+..+. .|...|.+++|+|++.+|++++.|+.|++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp ---------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 9999999875 68999999999999999887776664 588899999999999999999999999999
Q ss_pred EccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007757 500 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
|+....... .+.+| ...+.+++|+|++ +|++++.||.|++||+.+++++..+..|...|.+++|+| ++.+|++
T Consensus 275 d~~~~~~~~---~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~ 347 (425)
T 1r5m_A 275 HGGNGNSQN---CFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAV 347 (425)
T ss_dssp CSSSBSCSE---EECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEE
T ss_pred ECCCCccce---EecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEE
Confidence 998765443 33444 4678899999999 999999999999999999999999999999999999999 6789999
Q ss_pred EeCCCcEEEeC
Q 007757 580 CGWDGLIKYWD 590 (590)
Q Consensus 580 ~g~DG~I~iWD 590 (590)
++.||.|++||
T Consensus 348 ~~~dg~i~i~~ 358 (425)
T 1r5m_A 348 AFMDGQVNVYD 358 (425)
T ss_dssp EETTSCEEEEE
T ss_pred EECCCeEEEEE
Confidence 99999999997
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.3e-34 Score=305.47 Aligned_cols=301 Identities=19% Similarity=0.353 Sum_probs=252.1
Q ss_pred eecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEE
Q 007757 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 337 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~ 337 (590)
+..++..|..+|.|-. ...+++.++.+|.+.|++++|+|+ + +|++|+.||+|++||+ .+++++.
T Consensus 134 ~l~sgs~dg~i~vwd~-------------~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~-~~~~~~~ 197 (464)
T 3v7d_B 134 YVITGADDKMIRVYDS-------------INKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDI-KKGCCTH 197 (464)
T ss_dssp EEEEEETTSCEEEEET-------------TTTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEET-TTTEEEE
T ss_pred EEEEEcCCCcEEEEEC-------------CCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEEC-CCCcEEE
Confidence 5566777888888843 345688899999999999999998 4 9999999999999999 6888999
Q ss_pred EeccCCCceeEEEEec--CCCEEEEEeCCCeEEEEECCCCcEEEE----------------------ccCCCCceEEEEe
Q 007757 338 TYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRT----------------------FSTGKIPYVVKLN 393 (590)
Q Consensus 338 ~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~~~~~~----------------------~~~~~~~~~~~~~ 393 (590)
.+.+|...|.+++|++ ++.+|++|+.||.|++||+.++..... ...++...+.++.
T Consensus 198 ~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 277 (464)
T 3v7d_B 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277 (464)
T ss_dssp EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE
T ss_pred EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc
Confidence 9999999999999995 778999999999999999988764321 1223444455555
Q ss_pred cCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC
Q 007757 394 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
++ +.++++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||++++..+..+. .|..
T Consensus 278 ~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~ 353 (464)
T 3v7d_B 278 GH---GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTA 353 (464)
T ss_dssp EE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSS
T ss_pred CC---CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCC
Confidence 54 3689999999999999999999999999999999999999999999999999999999999998887775 5888
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 007757 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~ 553 (590)
.|.+++++ +.+|++++.||.|++||+.+........ + ...+..++|++++++|++|+ ||.|++||+.++++
T Consensus 354 ~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~--~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 354 LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH----H--TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE----C--TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec----C--CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 99999997 5899999999999999998765432221 1 23455689999999999998 89999999999999
Q ss_pred EEE-EecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 554 FRT-LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 554 ~~~-l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+.. +..|...|.+++|+ +..++++++.||.+.+|
T Consensus 425 ~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 425 VHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEE
T ss_pred EehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEE
Confidence 886 56788999999997 35567777778876655
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.4e-34 Score=294.51 Aligned_cols=283 Identities=16% Similarity=0.296 Sum_probs=225.3
Q ss_pred cceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe
Q 007757 255 KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK 334 (590)
Q Consensus 255 ~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~ 334 (590)
...++.++..|..+|.|-...... ......+..++.+|...|++++|+|+ +.+|++|+.|++|+|||+ ..++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~------~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~-~~~~ 109 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQ------NGYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDL-RTGT 109 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCC------SSBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEET-TSSC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCc------ccccccccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCc
Confidence 556778999999999996543221 01123456789999999999999999 899999999999999999 6788
Q ss_pred eEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEc---cCCCCceEEEEecCCCC-------CcEEEE
Q 007757 335 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF---STGKIPYVVKLNPDDDK-------QNILLA 404 (590)
Q Consensus 335 ~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~lvs 404 (590)
++..+.+|...|.+++|+|++++|++++.|+.|++||+......... .....+.++.+.+.... ..+|++
T Consensus 110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s 189 (343)
T 2xzm_R 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189 (343)
T ss_dssp EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEE
Confidence 99999999999999999999999999999999999999844333322 12334567777765421 268999
Q ss_pred EEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEeecCCCCcccEEEEcCC
Q 007757 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 405 g~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
++.|+.|++|| ........+..|...|++++|+|++++|++++.|+.|++||+.. ......+. +...|.+++|+|+
T Consensus 190 ~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~ 266 (343)
T 2xzm_R 190 VGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPK 266 (343)
T ss_dssp EETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSS
T ss_pred EcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCC
Confidence 99999999999 45667778889999999999999999999999999999999943 33333332 4567999999999
Q ss_pred CCEEEEEEcCCeEEEEEccCceeec--ccc--------cccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 484 TNWLAAQSLDNQILIYSTRERFQLN--KKK--------RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 484 g~~l~s~s~dg~I~iwd~~~~~~~~--~~~--------~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
+.+++++ .|+.|++|++.+..... .+. ...+| ...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 267 ~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 267 LQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK--NPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS--CCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC--CCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9887754 58889999997654332 111 11133 456889999999999999999999999998664
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=310.31 Aligned_cols=285 Identities=15% Similarity=0.303 Sum_probs=240.2
Q ss_pred CCCCeeEEEEcCCCCCEEEEE----------eCCCcEEEEEccCCCe---eEEEeccCCCceeEEEEecCCCEEEEEeCC
Q 007757 298 HTKGVSAIRFFPKYGHLILSA----------GMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sg----------s~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
+...|.+++|+|++..+|++| +.|+.|+||++. .+. ++..+ .|...|++++|+|++.+|++++.|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~-~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESS-SGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEcc-CCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccC
Confidence 335689999999944599999 899999999994 443 33333 588999999999999999999999
Q ss_pred CeEEEEECCC----CcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc------eEEE---EcccCC
Q 007757 365 KNIKYWDTET----GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------ITQE---YDQHLG 430 (590)
Q Consensus 365 g~I~vWd~~t----~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~------~~~~---~~~h~~ 430 (590)
|.|++||+.+ .+.+..+.. ...+.++.|++++ +.+|++++.|+.|++||+++++ .... +..|..
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 9999999988 346666654 3456678887752 3689999999999999999886 3332 357899
Q ss_pred ceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCC-----CCcccEEEEcCCC-CEEEEEEcCC---eEEEEE
Q 007757 431 AVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-----MHSMPSISLHPNT-NWLAAQSLDN---QILIYS 500 (590)
Q Consensus 431 ~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-----~~~i~~i~~sp~g-~~l~s~s~dg---~I~iwd 500 (590)
.|.+++|+|+ +.+|++++.|+.|++||++....+..+.... ...+.+++|+|++ .+|++++.|+ .|++||
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence 9999999999 7899999999999999999998887776432 6789999999997 6899999998 999999
Q ss_pred ccCceeeccccccc-CcccccceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEE
Q 007757 501 TRERFQLNKKKRFA-GHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 501 ~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
+++.... ...+. +| ...+.+++|+| ++++|++++.||.|++||+.+++++..+..|...|.+++|+|++..+|+
T Consensus 247 ~~~~~~~--~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 247 LRNANTP--LQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA 322 (416)
T ss_dssp TTSTTSC--SBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred CCCCCCC--cEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence 9875322 23344 45 56788999999 9999999999999999999999999999999999999999995558999
Q ss_pred EEeCCCcEEEeC
Q 007757 579 TCGWDGLIKYWD 590 (590)
Q Consensus 579 s~g~DG~I~iWD 590 (590)
+++.||.|+|||
T Consensus 323 s~~~d~~i~iw~ 334 (416)
T 2pm9_A 323 CASFDNKIEVQT 334 (416)
T ss_dssp ECCSSSEEEEEE
T ss_pred EEecCCcEEEEE
Confidence 999999999996
No 54
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.7e-35 Score=297.80 Aligned_cols=282 Identities=12% Similarity=0.127 Sum_probs=236.6
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe---eEEEeccCCCceeEEEEecCCC-EEEEEeCCCeE
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNI 367 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I 367 (590)
+....+|.+.|++++|+|+ +.+|++|+.||.|+||++. .+. ....+.+|...|.+++|+|+++ +|++|+.||.|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFD-IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEE-TTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred eecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeC-CCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 3445689999999999999 8999999999999999994 333 3556668999999999999999 99999999999
Q ss_pred EEEEC-CCCcEEEEcc--CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC---------CceEEEEcccCCceeEE
Q 007757 368 KYWDT-ETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---------KEITQEYDQHLGAVNTI 435 (590)
Q Consensus 368 ~vWd~-~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t---------~~~~~~~~~h~~~V~~i 435 (590)
++||+ .+++...... ....+.++.+.+ ..+|++++.|+.|++||+++ ++.+..+. |...|.++
T Consensus 82 ~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 82 LKVDLIGSPSFQALTNNEANLGICRICKYG----DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred EEEEeccCCceEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 99999 8887744443 445566777776 36899999999999999987 76666665 88999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCC-CcE-EEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeEEEEEccCce---eecc
Q 007757 436 TFVDSNRRFVTSSDDKSLRVWEFGI-PVV-IKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERF---QLNK 509 (590)
Q Consensus 436 ~~~p~~~~l~s~s~Dg~I~iwdl~~-~~~-~~~~~~~~~~~i~~i~~sp-~g~~l~s~s~dg~I~iwd~~~~~---~~~~ 509 (590)
+|++++ |++++.|+.|++||++. ... .......+...+.+++|+| ++.+|++++.||.|++|++.... ....
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 999877 99999999999999987 442 3334446788999999999 99999999999999999997650 0122
Q ss_pred cccccCccc-------ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCCEEEEEEcCCCCCEEEEEe
Q 007757 510 KKRFAGHIV-------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 510 ~~~~~~~~~-------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g 581 (590)
...+..|.. ...+.+++|+|++++|++|+.||.|++||+.+++++..+..| ...|.+++ | ++.+|++|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s 311 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDNILCLAT 311 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSSEEEEEE
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCCeEEEEe
Confidence 233444422 347899999999999999999999999999999999999998 99999999 7 778999999
Q ss_pred CCCc
Q 007757 582 WDGL 585 (590)
Q Consensus 582 ~DG~ 585 (590)
.||.
T Consensus 312 ~Dg~ 315 (342)
T 1yfq_A 312 SDDT 315 (342)
T ss_dssp ECTH
T ss_pred cCCc
Confidence 9998
No 55
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-33 Score=297.36 Aligned_cols=285 Identities=19% Similarity=0.358 Sum_probs=232.6
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecC------------------CCCCeeE
Q 007757 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSG------------------HTKGVSA 304 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~g------------------H~~~V~~ 304 (590)
+.+......+.+...++.++. +...+.|..... +++..+.+ +...|++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 128 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG-------------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC-------------CEEEEECC-----------------CCCCBEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC-------------CEEEEecCccccccccccccccccCCCceeEEE
Confidence 344455556666666666543 667777754322 22233333 3345999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC
Q 007757 305 IRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 305 l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~ 384 (590)
++|+|+ +++|++|+.|+.|+|||+ ..++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++++...+...
T Consensus 129 v~~s~d-g~~l~s~~~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 206 (393)
T 1erj_A 129 VCFSPD-GKFLATGAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206 (393)
T ss_dssp EEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEECCC-CCEEEEEcCCCeEEEEEC-CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence 999999 999999999999999999 678899999999999999999999999999999999999999999998888877
Q ss_pred CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-------cccCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007757 385 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-------~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
.....+.+.+. .+.+|++|+.|+.|++||++++..+..+ .+|...|.+++|+|++++|++++.|+.|++||
T Consensus 207 ~~v~~~~~~~~--~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 207 DGVTTVAVSPG--DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp SCEEEEEECST--TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEECC--CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 77777777773 3378999999999999999999888776 57899999999999999999999999999999
Q ss_pred CCCCc------------EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEE
Q 007757 458 FGIPV------------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525 (590)
Q Consensus 458 l~~~~------------~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v 525 (590)
++... +...+ ..|...|.+++|+|++.+|++++.|+.|++||+.++..+ ..+.+| ...|.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~---~~l~~h--~~~v~~v 358 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL---LMLQGH--RNSVISV 358 (393)
T ss_dssp C---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE---EEEECC--SSCEEEE
T ss_pred CCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE---EEECCC--CCCEEEE
Confidence 97532 22222 358888999999999999999999999999999887654 345566 4668889
Q ss_pred EEcC------CCCEEEEEeCCCcEEEEeCCCC
Q 007757 526 NFSP------DGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 526 ~~sp------dg~~l~sgs~dg~I~iwd~~t~ 551 (590)
+|++ ++++|++|+.||.|+||++...
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9876 6889999999999999997543
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.4e-33 Score=298.63 Aligned_cols=300 Identities=23% Similarity=0.399 Sum_probs=255.6
Q ss_pred eeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeE
Q 007757 257 TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM 336 (590)
Q Consensus 257 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~ 336 (590)
.+..++..|...+.|-. ...+++.++.+|.+.|.+++|+ +.+|++|+.||+|++||+ ..++++
T Consensus 130 ~~l~sg~~dg~i~vwd~-------------~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~-~~~~~~ 192 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSA-------------VTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNA-ETGECI 192 (445)
T ss_dssp TEEEEEETTSCEEEEET-------------TTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEEE
T ss_pred CEEEEEECCCcEEEEEC-------------CCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEEC-CcCcEE
Confidence 34456667777887743 3456788999999999999997 469999999999999999 688999
Q ss_pred EEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEE
Q 007757 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwD 415 (590)
..+.+|...|.++.|+ +..|++|+.||.|++||+.+++.+..+..+. .+.++.+ + +.++++|+.||.|++||
T Consensus 193 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~~dg~i~iwd 265 (445)
T 2ovr_B 193 HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D---GRRVVSGAYDFMVKVWD 265 (445)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C---SSCEEEEETTSCEEEEE
T ss_pred EEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C---CCEEEEEcCCCEEEEEE
Confidence 9999999999999996 5689999999999999999999988876543 3334444 2 36799999999999999
Q ss_pred CCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe
Q 007757 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 495 (590)
Q Consensus 416 l~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~ 495 (590)
+++++.+..+..|...|.++.| ++.+|++++.|+.|++||++++..+..+. .|...+.++.+ ++.+|++++.||.
T Consensus 266 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~ 340 (445)
T 2ovr_B 266 PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADST 340 (445)
T ss_dssp GGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTSC
T ss_pred CCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCCe
Confidence 9999999999999999999999 78899999999999999999998887774 47777777776 5679999999999
Q ss_pred EEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-----ecCCCCEEEEEEc
Q 007757 496 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-----KCHEGVCIGCEWH 570 (590)
Q Consensus 496 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l-----~~h~~~V~~v~~s 570 (590)
|++||++++..+........| ...+.+++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|.+++|+
T Consensus 341 i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 416 (445)
T 2ovr_B 341 VKIWDIKTGQCLQTLQGPNKH--QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 416 (445)
T ss_dssp EEEEETTTCCEEEEECSTTSC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred EEEEECCCCcEEEEEccCCCC--CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEec
Confidence 999999887665444433334 5678888885 689999999999999999999999988 4688899999999
Q ss_pred CCCCCEEEEEeCCCc----EEEeC
Q 007757 571 PLEQSKVATCGWDGL----IKYWD 590 (590)
Q Consensus 571 p~~~~~l~s~g~DG~----I~iWD 590 (590)
| ++.+|++|+.||+ |.|||
T Consensus 417 ~-~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 417 N-TKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp S-SEEEEEEECSSSSSCCEEEEEE
T ss_pred C-CEEEEEEcccCCCCccEEEEEE
Confidence 9 7789999999998 99997
No 57
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.5e-34 Score=287.90 Aligned_cols=255 Identities=20% Similarity=0.346 Sum_probs=207.3
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC-CCeeEEEeccCCCceeEEEEec--CCCEEEEEeCCCeEE
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIK 368 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~ 368 (590)
+..+.+|.+.|++++|+|+ +++|++|+.|++|+||++.. ..+++.++.+|...|.+++|++ ++++|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4567899999999999999 99999999999999999942 3467889999999999999986 489999999999999
Q ss_pred EEECCCCc--EEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc--eEEEEcccCCceeEEEEeCC---
Q 007757 369 YWDTETGQ--VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDS--- 440 (590)
Q Consensus 369 vWd~~t~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~--~~~~~~~h~~~V~~i~~~p~--- 440 (590)
|||+.+++ .+..+. ....+.++.|.|+. .+.+|++|+.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCC-CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 99999874 334443 23455677777752 13689999999999999998763 24567789999999999997
Q ss_pred ----------CCEEEEEeCCCcEEEEECCCCc----EEEEeecCCCCcccEEEEcCCC---CEEEEEEcCCeEEEEEccC
Q 007757 441 ----------NRRFVTSSDDKSLRVWEFGIPV----VIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 441 ----------~~~l~s~s~Dg~I~iwdl~~~~----~~~~~~~~~~~~i~~i~~sp~g---~~l~s~s~dg~I~iwd~~~ 503 (590)
+++|++++.|++|++||++... ....+ ..|...|.+++|+|++ .+|++++.|+.|++||+..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999997654 33333 4688999999999984 8999999999999999976
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 504 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.........+..+.....+.+++|+|+|++|++++.||.|+||+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 4211111112111225678899999999999999999999999976
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-33 Score=338.78 Aligned_cols=291 Identities=21% Similarity=0.324 Sum_probs=258.8
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
....+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ .++..+..+.+|...|.+++|+|++++|++++.||.|+||
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 34578899999999999999 999999999999999999 6888999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC
Q 007757 371 DTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 371 d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
|+.+++++..+..+ ..+.++.|.+.. ...++++|+.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKS-NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS-SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCC-CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99999999988654 345567777653 3478999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecC------------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcc
Q 007757 450 DKSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
||.|++||+........+... ....+.+++|+|++.++++++ ++.|.+|++.+........ .+|
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~--~~~- 839 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIH--TGH- 839 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEE--CSS-
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEc--CCC-
Confidence 999999999888776665421 233688999999999999987 7899999998876553322 234
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
...+.+++|+|+++++++|+.+|.|++||+.++..+..+.+|.+.|.+++|+| ++.+|++++.||.|++||
T Consensus 840 -~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 840 -HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp -SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred -CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEE
Confidence 46678899999999999999999999999999999999999999999999999 778999999999999996
No 59
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.8e-34 Score=293.01 Aligned_cols=295 Identities=19% Similarity=0.309 Sum_probs=229.9
Q ss_pred CCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 247 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 326 (590)
Q Consensus 247 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~i 326 (590)
.....+.+...++.++..|..+|.|-...... ........+|...|++++|+|+ +++|++|+.|++|+|
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------ICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDATTCI 87 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------EEEEEECSSCSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------eeeeeeccccCCcEEEEEECCC-CCEEEEEECCCcEEE
Confidence 33456777788889999999999995432110 0011234699999999999999 999999999999999
Q ss_pred EEccCCC-eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc---EEEEccC-CCCceEEEEecCCCCCcE
Q 007757 327 WDVVNSG-KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFST-GKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 327 Wd~~~~~-~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~---~~~~~~~-~~~~~~~~~~~~~~~~~~ 401 (590)
|++.... .++..+.+|...|.+++|+|++++|++|+.|+.|++||+.++. ++..+.. ...+..+.|+|++ .+
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~ 164 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ---EL 164 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS---SC
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC---CE
Confidence 9984322 5678899999999999999999999999999999999998764 3344433 3345667777754 57
Q ss_pred EEEEEcCCcEEEEECCCCc--eEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC---------------cEE
Q 007757 402 LLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP---------------VVI 464 (590)
Q Consensus 402 lvsg~~dg~I~vwDl~t~~--~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~---------------~~~ 464 (590)
|++|+.|+.|++||++++. ....+.+|...|.+++|+|++++|++++.|++|+||+...+ .++
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 9999999999999998875 45678899999999999999999999999999999996321 223
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecc------cccccCcccccceEEEEEcCCC-CEEEEE
Q 007757 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK------KKRFAGHIVAGYACQVNFSPDG-RFVMSG 537 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~------~~~~~~~~~~~~v~~v~~spdg-~~l~sg 537 (590)
..+...|...|.+++|+|++..|++++.|+.|++|+......... .....+| ...|.+++|+|++ .+|++|
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH--SQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS--SSCEEEEEECSSSTTEEEEE
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc--cCcEeEeEEeCCCceEEEEc
Confidence 344444788899999999999999999999999999865422110 1122345 5679999999998 599999
Q ss_pred eCCCcEEEEeCCCCeEEEEE
Q 007757 538 DGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 538 s~dg~I~iwd~~t~~~~~~l 557 (590)
+.||.|+||++.+.+.+..+
T Consensus 323 s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 323 SDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp ETTSCEEEEEECC-------
T ss_pred CCCCcEEEEEecCCCCcccc
Confidence 99999999999988766544
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.5e-35 Score=307.47 Aligned_cols=279 Identities=13% Similarity=0.150 Sum_probs=233.4
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
..+++++|+|+ +.+|++|+.||.|++||+ ........+..| ..+....|++++++|++|+.||.|++||+.+++.+.
T Consensus 57 ~~~~~~~~s~~-g~~l~~~~~d~~v~i~d~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 57 DAGKGNTFEKV-GSHLYKARLDGHDFLFNT-IIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp BCCTTCEEEEE-ETTEEEEEETTEEEEEEC-CSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred ccccceeeeec-CCeEEEEEcCCcEEEEEe-cccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence 34568999999 899999999999999999 566655555555 445566789999999999999999999999999988
Q ss_pred Ecc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007757 380 TFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 380 ~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
.+. ....+.++.|++++ .+|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 134 ~~~~h~~~v~~~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSG---EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp ETTSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ecccccCccEEEEECCCC---CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 874 34556677787754 68999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeecC--C---------------------CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccC
Q 007757 459 GIPVVIKYISEP--H---------------------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 459 ~~~~~~~~~~~~--~---------------------~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~ 515 (590)
+++..+..+... + ...+.+++|+|++++|++++.||.|++||+++....... ...
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~ 288 (420)
T 3vl1_A 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL--PSK 288 (420)
T ss_dssp TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE--CCT
T ss_pred CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc--ccc
Confidence 998888777531 2 244556667889999999999999999999887654332 223
Q ss_pred cccccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe-EEEEEec-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 516 HIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK-VFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~~-~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
| ...+.+++|+|+++ +|++|+.||.|++||+.+++ ++..+.. |...|.++.|. ++.+|++++.||.|++||
T Consensus 289 ~--~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 289 F--TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp T--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEE
T ss_pred c--CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEe
Confidence 3 46788999999999 99999999999999999875 4777777 56677777665 356999999999999996
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.3e-33 Score=297.71 Aligned_cols=281 Identities=16% Similarity=0.325 Sum_probs=240.8
Q ss_pred eeEEecCCCCCe-eEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEE
Q 007757 291 LVHTWSGHTKGV-SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 291 ~v~~l~gH~~~V-~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
...++.+|...| +|+.|. +++|++|+.||+|++||+ .+++++..+.+|...|.+++|++++ +|++|+.||.|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~-~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred ceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEEC-CCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 456889999885 666663 679999999999999999 6889999999999999999999987 9999999999999
Q ss_pred EECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce-----------------------EEEE
Q 007757 370 WDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----------------------TQEY 425 (590)
Q Consensus 370 Wd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~-----------------------~~~~ 425 (590)
||+.+++++..+.. ...+.++.+.+.+ .+.++++|+.|+.|++||++++.. +..+
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 99999999988874 3455677777643 347899999999999999987652 5567
Q ss_pred cccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce
Q 007757 426 DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 426 ~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~ 505 (590)
.+|...|.++ ++++++|++++.|+.|++||+++...+..+. .|...|.+++|+|++.+|++++.||.|++||+.++.
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 7888888887 5678899999999999999999988887774 588899999999999999999999999999998876
Q ss_pred eecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 007757 506 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585 (590)
Q Consensus 506 ~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 585 (590)
.+. .+.+| ...+.+++|+ +.+|++|+.||.|++||+.++.....+. |...+..++|++ ++.+|++|+ ||.
T Consensus 344 ~~~---~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~ 413 (464)
T 3v7d_B 344 LMY---TLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQ 413 (464)
T ss_dssp EEE---EECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTE
T ss_pred EEE---EEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCe
Confidence 553 44555 4668888887 6899999999999999999988776664 666778889999 677899888 999
Q ss_pred EEEeC
Q 007757 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|+|||
T Consensus 414 i~iwd 418 (464)
T 3v7d_B 414 FNIYN 418 (464)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 62
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-34 Score=301.44 Aligned_cols=281 Identities=11% Similarity=0.103 Sum_probs=218.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCC-------cEEEEEccCCCe---------eEEEeccCCCceeEEEEecCCCEEEEEe
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDT-------KVKIWDVVNSGK---------CMRTYMGHSKAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg-------~I~iWd~~~~~~---------~~~~~~~h~~~V~~l~fspdg~~l~s~s 362 (590)
.-||+|++|+|+ +++|++|+.+. .|+||++..... ....+.+|...|.+++++ ++.+++|+
T Consensus 14 g~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 458999999999 99999998643 599999843321 113466888899888775 55676654
Q ss_pred -----------CCCeEEEEECCCCcEEE----EccC------CCCceEEEEecCCCCCcEEE--EEEcCCcEEEEECCCC
Q 007757 363 -----------YDKNIKYWDTETGQVIR----TFST------GKIPYVVKLNPDDDKQNILL--AGMSDKKIVQWDMNTK 419 (590)
Q Consensus 363 -----------~Dg~I~vWd~~t~~~~~----~~~~------~~~~~~~~~~~~~~~~~~lv--sg~~dg~I~vwDl~t~ 419 (590)
.|+.|++|++.+..... .... .....+++|+|++ .+++ +++.|+.|++||+.++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg---~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG---TVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS---SCEEEEESCSSCEEEEEETTTT
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC---CEEEEEECCCCCEEEEeECCCC
Confidence 46789999987653221 1111 1224577888865 3444 3446899999999999
Q ss_pred ceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcCCCCEEEEEEcCC----
Q 007757 420 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDN---- 494 (590)
Q Consensus 420 ~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---- 494 (590)
+.+..+. |.+.|.+++|+|++++|++++.++ +++|+..++..+ ......|...|.+++|+|++.++++++.++
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred cEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 9988885 778899999999999999998655 666666665554 344456788899999999999999999887
Q ss_pred eEEEEEccCceee-cccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-ecCCCCEEEEEEcCC
Q 007757 495 QILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPL 572 (590)
Q Consensus 495 ~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l-~~h~~~V~~v~~sp~ 572 (590)
.+++|++...... .....+.+| ...|++++|+|+|++|++|+.|+.|+|||+.+++++..+ .+|...|++++|+|
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~--~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp- 322 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNR--FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP- 322 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESS--CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-
T ss_pred EEeecccccceecceeeeeecCC--CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-
Confidence 6888888654322 223344555 467899999999999999999999999999999999886 68999999999999
Q ss_pred CCCEEEEEeCCCcEEEeC
Q 007757 573 EQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 573 ~~~~l~s~g~DG~I~iWD 590 (590)
++.+|||||.|++|+|||
T Consensus 323 dg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIK 340 (365)
T ss_dssp TSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 788999999999999996
No 63
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=290.16 Aligned_cols=284 Identities=19% Similarity=0.296 Sum_probs=216.5
Q ss_pred CCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEe-cC-CCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007757 247 EKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW-SG-HTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 247 ~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l-~g-H~~~V~~l~fsp~~g~~L~sgs~Dg~I 324 (590)
.....+.+. +..++..|..+|.|-.... ...++..+ .+ |...|++|+|+|+ +.+|++|+.|++|
T Consensus 17 v~~~~~s~~--~las~~~D~~i~lw~~~~~-----------~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v 82 (330)
T 2hes_X 17 IWSFDFSQG--ILATGSTDRKIKLVSVKYD-----------DFTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEETT--EEEEEESSSCEEEEECSSS-----------CCEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred eeeeccCCC--EEEEEcCCCEEEEEEecCC-----------CeEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcE
Confidence 333344443 6788889999999954321 12345556 45 9999999999999 8999999999999
Q ss_pred EEEEccC------CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC----cEEEEccCC-CCceEEEEe
Q 007757 325 KIWDVVN------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG----QVIRTFSTG-KIPYVVKLN 393 (590)
Q Consensus 325 ~iWd~~~------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~----~~~~~~~~~-~~~~~~~~~ 393 (590)
+||++.. ...++..+.+|...|.+++|+|++++|++|+.|++|++||+... +++..+..+ ..+..+.|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 9999832 23567888999999999999999999999999999999999432 455555443 445677777
Q ss_pred cCCCCCcEEEEEEcCCcEEEEECCCC--ceEEEEcccCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCC--------
Q 007757 394 PDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIP-------- 461 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~vwDl~t~--~~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~-------- 461 (590)
|++ .+|++|+.|+.|++||+.++ +++..+.+|.+.|.++.|+|+ +.+|++++.|++|++||+...
T Consensus 163 p~~---~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 163 PSE---ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp SSS---SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred CCC---CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 754 68999999999999999876 678889999999999999998 678999999999999998653
Q ss_pred cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccccc-ceEEEEEcC--CCCEEEEEe
Q 007757 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-YACQVNFSP--DGRFVMSGD 538 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp--dg~~l~sgs 538 (590)
.....+...|...|.+++|++++ +|++++.||.|++|+..++..........+| .. .+.+++|+| ++++|++|+
T Consensus 240 ~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 240 VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH--GVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT--TTSCEEEEEEC-----CCEEEEE
T ss_pred EEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc--ccceEEEEEEecCCCceEEEEec
Confidence 33344434488899999999765 8999999999999998765321111222344 33 688899999 789999999
Q ss_pred CCCcEEEEeCCC
Q 007757 539 GEGKCWFWDWKS 550 (590)
Q Consensus 539 ~dg~I~iwd~~t 550 (590)
.||.|+|||+..
T Consensus 317 ~Dg~v~~W~~~~ 328 (330)
T 2hes_X 317 DDGIVNFWSLEK 328 (330)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCcEEEEEecc
Confidence 999999999864
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-33 Score=288.12 Aligned_cols=278 Identities=15% Similarity=0.243 Sum_probs=235.8
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 377 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~ 377 (590)
|.++|.+++|+|+ |++++++..++.+.+|... .........+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIP-RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCC-SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccC-CccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 5678999999999 8999988888888787763 3333334458999999999999999999999 99999999987753
Q ss_pred EEEc------cCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc--eEEEEcccCCceeEEEEeCCCCEEEEEeC
Q 007757 378 IRTF------STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 378 ~~~~------~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~--~~~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
...+ .....+.++.+.+++ .+|++++.|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDG---CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTS---SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eeeeecccccCCCCcEEEEEEcCCC---CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 3222 234455667777643 689999999999999999887 66778889999999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|+.|++||+++...+..+. .|...+.+++|+|++.+|++++.|+.|++||+++........ ....+.+++|+|
T Consensus 162 dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~v~~~~~s~ 234 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD------FTSQIFSLGYCP 234 (337)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECT
T ss_pred CCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec------CCCceEEEEECC
Confidence 9999999999988777764 488899999999999999999999999999998876554321 245688899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++++|++++.+|.|++||+.+++.. .+..|...|.+++|+| ++.+|++++.||.|++||
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECC-CCCEEEEecCCCcEEEEE
Confidence 9999999999999999999988764 5778999999999999 678999999999999996
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-33 Score=339.25 Aligned_cols=319 Identities=18% Similarity=0.275 Sum_probs=266.9
Q ss_pred cCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC
Q 007757 252 VEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN 331 (590)
Q Consensus 252 ~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~ 331 (590)
+.+...+..++..|..++.|- ....+.+.++.+|.+.|++++|+|+ +++|++|+.||.|+|||+ .
T Consensus 623 ~s~~~~~l~s~~~d~~i~vw~-------------~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~-~ 687 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKTLQVFK-------------AETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDS-A 687 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-------------TTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-T
T ss_pred ECCCCCEEEEEeCCCeEEEEE-------------CCCCCEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEC-C
Confidence 444455556666667777763 3445678899999999999999999 899999999999999999 6
Q ss_pred CCeeEEEeccCCCceeEEEEec--CCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcC
Q 007757 332 SGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSD 408 (590)
Q Consensus 332 ~~~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~d 408 (590)
+++++..+.+|...|.+++|+| ++.++++|+.|+.|++||+.+++++..+..+ ..+.++.+++++ .++++|+.|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~d 764 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD---ELLASCSAD 764 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---TEEEEEESS
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---CEEEEEECC
Confidence 8899999999999999999999 5668999999999999999999998887654 345567777644 689999999
Q ss_pred CcEEEEECCCCceEEEE-------------------------------------------------------cccCCcee
Q 007757 409 KKIVQWDMNTKEITQEY-------------------------------------------------------DQHLGAVN 433 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~-------------------------------------------------------~~h~~~V~ 433 (590)
|.|++||++++.....+ .+|...|.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 99999998776543332 26778899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc--
Q 007757 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK-- 511 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-- 511 (590)
+++|+|+++++++++.|+.|++||+.+...+..+. .|...|.+++|+|++.+|++++.|+.|++|++..........
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 99999999999999999999999999988877765 588999999999999999999999999999976421110000
Q ss_pred ------------------------cc---cC---cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 007757 512 ------------------------RF---AG---HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 512 ------------------------~~---~~---~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
.. .+ ......+.+++|+|+++++++|+.+|.|++||+.+++.+..+.+|.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 00 00 0113457889999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 562 GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 562 ~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..|.+++|+| ++.+|++++.||.|++||
T Consensus 1004 ~~v~~l~~s~-dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1004 KAVRHIQFTA-DGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SCCCCEEECS-SSSCEEEECSSSBEEEEE
T ss_pred CceEEEEECC-CCCEEEEEcCCCEEEEEE
Confidence 9999999999 678999999999999996
No 66
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=325.49 Aligned_cols=200 Identities=13% Similarity=0.142 Sum_probs=162.8
Q ss_pred CCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 007757 244 AGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTK 323 (590)
Q Consensus 244 ~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~ 323 (590)
........+.+...+++++..|..+|.|-... .+++.. ..|...|.+|+|+| +++|++++.|++
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-------------~~~~~~-~~~~~~V~~l~fsp--g~~L~S~s~D~~ 80 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-------------VEVVIK-LEDRSAIKEMRFVK--GIYLVVINAKDT 80 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTT-------------CEEEEE-CSSCCCEEEEEEET--TTEEEEEETTCE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------cEEEEE-cCCCCCEEEEEEcC--CCEEEEEECcCe
Confidence 34455566777788889999999999994321 123333 35889999999999 469999999999
Q ss_pred EEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-----------cc-CCCCceEEE
Q 007757 324 VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-----------FS-TGKIPYVVK 391 (590)
Q Consensus 324 I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~-----------~~-~~~~~~~~~ 391 (590)
|+|||+ ..++++..+. |...|++++|+|++++|++|+.||.|++||+.++++... +. ....+.+++
T Consensus 81 v~lWd~-~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~ 158 (902)
T 2oaj_A 81 VYVLSL-YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158 (902)
T ss_dssp EEEEET-TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred EEEEEC-CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence 999999 5778888875 778999999999999999999999999999999876411 11 224566788
Q ss_pred EecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEccc------------------CCceeEEEEeCCCCEEEEEeCCCcE
Q 007757 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH------------------LGAVNTITFVDSNRRFVTSSDDKSL 453 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h------------------~~~V~~i~~~p~~~~l~s~s~Dg~I 453 (590)
|+|.+ ..++++|+.|+.| +||+++++.+..+..| ...|++++|+|++.+|++++.||+|
T Consensus 159 ~sp~~--~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i 235 (902)
T 2oaj_A 159 WNPRD--IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL 235 (902)
T ss_dssp EETTE--EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCE
T ss_pred EccCC--CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeE
Confidence 88753 3679999999999 9999999988888765 4779999999999999999999999
Q ss_pred EEEECCCCcEE
Q 007757 454 RVWEFGIPVVI 464 (590)
Q Consensus 454 ~iwdl~~~~~~ 464 (590)
++||++++..+
T Consensus 236 ~lWd~~~g~~~ 246 (902)
T 2oaj_A 236 VFWDANSGHMI 246 (902)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcEE
Confidence 99999765543
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.8e-34 Score=294.81 Aligned_cols=252 Identities=20% Similarity=0.353 Sum_probs=202.7
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC-eeEEEeccCCCceeEEEEec--CCCEEEEEeCCCeEEE
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKY 369 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~-~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~v 369 (590)
..+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.... .++..+.+|...|.+++|++ ++++|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 356799999999999999 9999999999999999994332 35778999999999999986 4899999999999999
Q ss_pred EECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC--CCEEEEE
Q 007757 370 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS--NRRFVTS 447 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~--~~~l~s~ 447 (590)
||++++.. ..+..+.+|...|++++|+|+ +.+|+++
T Consensus 86 Wd~~~~~~------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 86 WREENGTW------------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp ECCSSSCC------------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred EECCCCcc------------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence 99875321 122345678999999999998 7899999
Q ss_pred eCCCcEEEEECCCCcEE--EEeecCCCCcccEEEEcCC-----------------CCEEEEEEcCCeEEEEEccCceeec
Q 007757 448 SDDKSLRVWEFGIPVVI--KYISEPHMHSMPSISLHPN-----------------TNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~--~~~~~~~~~~i~~i~~sp~-----------------g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
+.|++|++||++..... ......|...+.+++|+|+ +.+|++++.|+.|++||++......
T Consensus 124 s~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~ 203 (316)
T 3bg1_A 124 SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK 203 (316)
T ss_dssp CSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE
T ss_pred cCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc
Confidence 99999999999876322 2333467888999999997 4789999999999999997543222
Q ss_pred ccccccCcccccceEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC---e-EEEEEecCCCCEEEEEEcCCCCCEEEEE
Q 007757 509 KKKRFAGHIVAGYACQVNFSPDG----RFVMSGDGEGKCWFWDWKSC---K-VFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg----~~l~sgs~dg~I~iwd~~t~---~-~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
....+.+| ...|.+++|+|++ .+|++|+.||+|+||++.+. . ....+..|...|.+++|+| ++.+|+++
T Consensus 204 ~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~ 280 (316)
T 3bg1_A 204 EEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVS 280 (316)
T ss_dssp EEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEE
T ss_pred eeeecccC--CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEE
Confidence 34456677 5679999999987 89999999999999998762 1 2334567899999999999 67899999
Q ss_pred eCCCcEEEeC
Q 007757 581 GWDGLIKYWD 590 (590)
Q Consensus 581 g~DG~I~iWD 590 (590)
+.||+|+|||
T Consensus 281 ~~D~~v~lw~ 290 (316)
T 3bg1_A 281 GGDNKVTLWK 290 (316)
T ss_dssp ESSSCEEEEE
T ss_pred cCCCeEEEEE
Confidence 9999999996
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.8e-33 Score=306.97 Aligned_cols=322 Identities=14% Similarity=0.164 Sum_probs=264.2
Q ss_pred CCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCC-eeEEEEcC--CCCCEEEEEeCCC
Q 007757 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKG-VSAIRFFP--KYGHLILSAGMDT 322 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~-V~~l~fsp--~~g~~L~sgs~Dg 322 (590)
......+.+...+..... +...+.|-.... ..+.+.+..+.+|... |++++|+| + +++|++|+.||
T Consensus 20 ~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~---------~~~~~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg 88 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-GKSAFVRCLDDG---------DSKVPPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESG 88 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-TTEEEEEECCSS---------CCSSCSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTS
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEECCCC---------CCccccceEEecCCCceEEEEEECcCCC-CCEEEEecCCC
Confidence 344455555555444443 566777744311 0122677899999999 99999999 8 99999999999
Q ss_pred cEEEEEccC-------CCeeEEEeccCCCceeEEEEecCCCEEEEEeCC----CeEEEEECCCCcEEEEccCC-CCceEE
Q 007757 323 KVKIWDVVN-------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTETGQVIRTFSTG-KIPYVV 390 (590)
Q Consensus 323 ~I~iWd~~~-------~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D----g~I~vWd~~t~~~~~~~~~~-~~~~~~ 390 (590)
.|+|||+.. ....+..+..|...|.+++|+|++++|++++.+ +.|.+|| +++.+..+..+ ..+.++
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEE
Confidence 999999932 246778888999999999999999999999988 6888888 56677776543 344566
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC---ceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEE
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~---~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~ 466 (590)
.|.+++ ..++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +++|++++.|+.|++||+.++..+..
T Consensus 167 ~~~~~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 167 HLKQSR--PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp EECSSS--SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred EECCCC--CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 666643 35899999999999999999999999999999 9999999999 99999999999999999999998888
Q ss_pred eec---CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcE
Q 007757 467 ISE---PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 467 ~~~---~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
+.. .|...|.+++|+ ++.+|++++.|+.|++||+.+...+....... ......+..+.|+ ++.+|++|+.+|.|
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~g~i 321 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVAT-GNGRIISLSLDGTL 321 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEE-ETTEEEEEETTSCE
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-CcccCceeEEEeC-CCCeEEEEECCCCE
Confidence 844 688999999999 99999999999999999998876554433221 1223556677776 89999999999999
Q ss_pred EEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 544 WFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 544 ~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++||+.+++++..+.+|...|.+++| | + |++++.||.|++||
T Consensus 322 ~~~d~~~~~~~~~~~~~~~~v~~~~~-~-~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 322 NFYELGHDEVLKTISGHNKGITALTV-N-P---LISGSYDGRIMEWS 363 (615)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEET-T-T---TEEEETTSCEEETT
T ss_pred EEEECCCCcEEEEEeCCCCCEEEEEe-c-C---cEEECCCCeEEEEE
Confidence 99999999999999999999999999 8 3 88888888888886
No 69
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=316.53 Aligned_cols=315 Identities=10% Similarity=0.044 Sum_probs=226.0
Q ss_pred eecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCC-----CCCEEEEEeCCCcEEEEEccCC
Q 007757 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-----YGHLILSAGMDTKVKIWDVVNS 332 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~-----~g~~L~sgs~Dg~I~iWd~~~~ 332 (590)
+..+++.|..+|+|-...... ......++.+|.+.|.+|+|+|+ .+.+||+|+.||+|+|||+...
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~---------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTL---------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp -------CEEEEEEEEETTTC---------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred hhccCCCCceEEEEEccCCCC---------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 447788999999996533211 11234567789999999999996 2579999999999999999432
Q ss_pred C----------eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE-EEEccCC-CCceEEEEecCCCCCc
Q 007757 333 G----------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDDKQN 400 (590)
Q Consensus 333 ~----------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 400 (590)
. .+...+.+|...|++++|+++ ..|++|+.||+|++||++++.. ...+..+ ..+..+++...+....
T Consensus 246 ~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 324 (524)
T ss_dssp SSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred ccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe
Confidence 1 123578899999999999986 4899999999999999997743 3334332 3334443233222227
Q ss_pred EEEEEEcCCcEEEEECCCCceEEEEcccCC--ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEE
Q 007757 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHLG--AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 478 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~--~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i 478 (590)
+|++|+.|++|++||+++++.+..+.+|.. .|.+++|+|++..|++++.|++|++||++...++..+. .|...|.+|
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sv 403 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAI 403 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEE
T ss_pred EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEE
Confidence 899999999999999999887777766653 58899999999999999999999999999988766665 489999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCc---ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEE
Q 007757 479 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-SCKVF 554 (590)
Q Consensus 479 ~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~-t~~~~ 554 (590)
+|+|++.+|++|+.|++|++|++... .+ ..+... .....+..++|+|+|..+. ... .+.+|++. ++.++
T Consensus 404 a~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~---~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~ 476 (524)
T 2j04_B 404 GVSRLHPMVLAGSADGSLIITNAARR-LL---HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSK 476 (524)
T ss_dssp ECCSSCCBCEEEETTTEEECCBSCSS-TT---TCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC--------
T ss_pred EeCCCCCeEEEEECCCEEEEEechHh-hc---cccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcce
Confidence 99999999999999999999998643 11 111111 1122466899999998653 222 34455543 57788
Q ss_pred EEEecCCCCEEEEEEcCCC--CCEEEEEeCCCcEEEeC
Q 007757 555 RTLKCHEGVCIGCEWHPLE--QSKVATCGWDGLIKYWD 590 (590)
Q Consensus 555 ~~l~~h~~~V~~v~~sp~~--~~~l~s~g~DG~I~iWD 590 (590)
.++.+|...|.+|+|+|++ +..|++|+.||.|+||+
T Consensus 477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 477 AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred eeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 8899999999999999953 35899999999999995
No 70
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=296.79 Aligned_cols=279 Identities=15% Similarity=0.295 Sum_probs=221.2
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe-----------eEEEeccCC------------CceeEEEEec
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-----------CMRTYMGHS------------KAVRDISFCN 353 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~-----------~~~~~~~h~------------~~V~~l~fsp 353 (590)
.|.+.|++|+|+|+ +.+|++|+.||.|+||++. .+. ++..+.+|. ..|++++|+|
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 46889999999998 9999999999999999994 443 578899998 8899999999
Q ss_pred CC--CEEEEEeCCCeEEEEECCCCcEE---------------------------------------EEcc--CCCCceEE
Q 007757 354 DG--TKFLTASYDKNIKYWDTETGQVI---------------------------------------RTFS--TGKIPYVV 390 (590)
Q Consensus 354 dg--~~l~s~s~Dg~I~vWd~~t~~~~---------------------------------------~~~~--~~~~~~~~ 390 (590)
++ .+|++++.|+.|++||+.++... ..+. ....+.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999999775442 1222 23445677
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEE-------EcccCCceeEEEEeCCC-CEEEEEeCCCcEEEEECCCC
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQE-------YDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~-------~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~ 461 (590)
.|++++ .+|++| .|+.|++||+++. ..+.. +..|...|++++|+|++ .+|++++.||.|++||++..
T Consensus 184 ~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 184 SINSDY---ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp EECTTS---SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEcCCC---CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 777743 678888 8999999999944 44442 45799999999999998 99999999999999999887
Q ss_pred cE----EEEeecCCCC------------cccEEEEcCCCCEEEEEEcCCeEEEEEccC-ceeecccccccCccccc----
Q 007757 462 VV----IKYISEPHMH------------SMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAG---- 520 (590)
Q Consensus 462 ~~----~~~~~~~~~~------------~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~---- 520 (590)
.. +..+. .+.. .|.+++|+|++.+|++++. +.|++||++. ...+ ..+.+|....
T Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~---~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 260 ALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV---ETYQVHEYLRSKLC 334 (447)
T ss_dssp SSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS---CCEESCGGGTTTHH
T ss_pred ccccceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc---ceeecccccccccc
Confidence 75 45553 3443 8999999999999999998 9999999986 4433 3344442111
Q ss_pred ---------ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-------------------------------
Q 007757 521 ---------YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH------------------------------- 560 (590)
Q Consensus 521 ---------~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h------------------------------- 560 (590)
.+..++|+|++++|++|+.||.|+|||+.+++.+. +.+|
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccccc
Confidence 12348999999999999999999999999988763 3333
Q ss_pred --CCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 561 --EGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 561 --~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
...|..++|+| ++.+||+++.++ +.+|
T Consensus 414 ~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 414 DFNKKILHTAWHP-KENIIAVATTNN-LYIF 442 (447)
T ss_dssp CTTSCCCEEEECS-SSSEEEEECSSC-EEEE
T ss_pred ccCCceeEEEECC-CCCEEEEEecce-eeee
Confidence 34688999999 677999988776 6665
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.1e-33 Score=295.49 Aligned_cols=273 Identities=25% Similarity=0.482 Sum_probs=236.2
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEEC
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
....+|...|+|+.| + +.+|++|+.||.|++||+ .+++++..+.+|...|.+++| ++++|++|+.||.|++||+
T Consensus 127 ~~~~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp ECCCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEES-SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred ecccCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeC-CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 344578889999988 4 789999999999999999 688899999999999999999 7889999999999999999
Q ss_pred CCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE---EEEcccCCceeEEEEeCCCCEEEEEeC
Q 007757 373 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT---QEYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 373 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~---~~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
.+++.+..+..+. ..+.++.+.+ .++++|+.||.|++||++++... ..+.+|...|.++.| ++++|++++.
T Consensus 201 ~~~~~~~~~~~h~-~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHC-EAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCC-SCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCC-CcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999998886543 3344444432 58999999999999999988655 677899999999999 6789999999
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
||.|++||+++...+..+. .|...|.++.+ ++.+|++++.||.|++||++++..+. .+.+| ...+.+++|
T Consensus 275 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h--~~~v~~~~~-- 344 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---VLEGH--EELVRCIRF-- 344 (435)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE---EECCC--SSCEEEEEC--
T ss_pred CCeEEEEECCcCcEEEEEc-CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEE---EEeCC--cCcEEEEEe--
Confidence 9999999999998888775 58888999988 47899999999999999999876553 34455 456778888
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe---------EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCK---------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~---------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++.+|++|+.||.|++||+.++. ++..+.+|.+.|.+++| ++.+|++|+.||.|++||
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEEECCSSSEEEEEC
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCEEEEEeCCCEEEEEE
Confidence 88999999999999999998766 88999999999999999 356899999999999997
No 72
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.7e-32 Score=279.06 Aligned_cols=296 Identities=19% Similarity=0.329 Sum_probs=244.4
Q ss_pred hccCCCCCCcccCCc-ceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 007757 241 KGNAGGEKGEHVEDK-STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 319 (590)
Q Consensus 241 ~~~~~~~~~~~~~~~-s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs 319 (590)
+++.+.+....+.+. ..++.+++.|..+|.|-...... ....+.+++.+|...|++++|+|+ +.+|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~ 105 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--------NYGIPQRALRGHSHFVSDVVISSD-GQFALSGS 105 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS--------CSEEEEEEECCCSSCEEEEEECTT-SSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc--------ccceeeEEEeCCCCCEEEEEECCC-CCEEEEEc
Confidence 357777777777765 56888999999999996543221 223467889999999999999999 99999999
Q ss_pred CCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC--CCceEEEEecCCC
Q 007757 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDD 397 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~ 397 (590)
.|+.|++|+. ...........+...+..+.+++++.+|++++.|+.+++||+............ .....+.+.+...
T Consensus 106 ~d~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 106 WDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred ccccceEEee-cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 9999999999 577777888889999999999999999999999999999999877665554443 3345566666543
Q ss_pred CCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccE
Q 007757 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
..++++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.|+.|++||++....+..+. +...+.+
T Consensus 185 -~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~ 261 (340)
T 4aow_A 185 -NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDIINA 261 (340)
T ss_dssp -SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred -CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CCceEEe
Confidence 3678999999999999999999999999999999999999999999999999999999999998887774 4568999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEccCceeecccc------cccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK------RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 478 i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~------~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
++|+|++.++ +++.|+.|++||++......... ...+| ...|.+++|+|+|++|++|+.||.|+|||+.+|
T Consensus 262 ~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 262 LCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE--PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC--CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred eecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 9999987655 55679999999998765443322 12233 567899999999999999999999999999987
Q ss_pred e
Q 007757 552 K 552 (590)
Q Consensus 552 ~ 552 (590)
.
T Consensus 339 t 339 (340)
T 4aow_A 339 T 339 (340)
T ss_dssp -
T ss_pred C
Confidence 5
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.7e-32 Score=290.60 Aligned_cols=274 Identities=24% Similarity=0.481 Sum_probs=236.4
Q ss_pred eeEEecCCCCCe-eEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEE
Q 007757 291 LVHTWSGHTKGV-SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 369 (590)
Q Consensus 291 ~v~~l~gH~~~V-~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~v 369 (590)
..+.+.+|.+.| +|+.+ + +++|++|+.||+|++||+ .+++++..+.+|...|.+++|+ +++|++|+.||.|++
T Consensus 110 ~~~~l~~h~~~v~~~~~~--~-g~~l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF--C-GNRIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEEEEEE--E-TTEEEEEETTSCEEEEET-TTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEEEEEE--c-CCEEEEEECCCcEEEEEC-CCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 446788999875 55554 4 789999999999999999 6888999999999999999997 669999999999999
Q ss_pred EECCCCcEEEEccCCC-CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEe
Q 007757 370 WDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
||+.+++.+..+..+. .+.++.+ + +..+++|+.||.|++||+++++.+..+..|...|.++.| ++.+|++++
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~--~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHL--H---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEE--E---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE
T ss_pred EECCcCcEEEEECCCCCcEEEEEe--c---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc
Confidence 9999999998886443 2334444 2 257999999999999999999999999999999999999 688999999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEc
Q 007757 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 449 ~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
.||.|++||+++...+..+. .|...|.++.+ ++.+|++++.|+.|++||++++..+. .+.+| ...+.++.+
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~--~~~v~~~~~- 327 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGH--QSLTSGMEL- 327 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE---EECCC--CSCEEEEEE-
T ss_pred CCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE---EEcCC--cccEEEEEE-
Confidence 99999999999988887775 58888999998 78999999999999999998876553 34444 345555555
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 529 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++++|++|+.||.|++||+.+++++..+.. |...|.+++|++ .+|++|+.||.|++||
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWD 388 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEE
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEE
Confidence 678999999999999999999999999986 888999999964 6999999999999997
No 74
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.2e-32 Score=275.76 Aligned_cols=281 Identities=21% Similarity=0.409 Sum_probs=235.8
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007757 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I 324 (590)
+......+.+...+..+...|...|.|-. ...+++..+.+|...|.+++|+|+ +++|++|+.|+.|
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~-------------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i 89 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTL 89 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEET-------------TTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeC-------------CCcccchhhccCCCceEEEEEcCC-CCEEEEECCCCEE
Confidence 34444556677777788888999999943 234567889999999999999999 8999999999999
Q ss_pred EEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcEEE
Q 007757 325 KIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 325 ~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lv 403 (590)
+|||+ ..++++..+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+..+ ..+..+.+.+++ .+|+
T Consensus 90 ~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~ 165 (312)
T 4ery_A 90 KIWDV-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG---SLIV 165 (312)
T ss_dssp EEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEE
T ss_pred EEEEC-CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC---CEEE
Confidence 99999 678899999999999999999999999999999999999999999998888654 345567776643 6899
Q ss_pred EEEcCCcEEEEECCCCceEEEEc-ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCc---ccEEE
Q 007757 404 AGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS---MPSIS 479 (590)
Q Consensus 404 sg~~dg~I~vwDl~t~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~---i~~i~ 479 (590)
+|+.|+.|++||+++++.+..+. .+...+.+++|+|++++|++++.|+.|++||++....+..+.. +... +....
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~ 244 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANF 244 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS-SCCSSSCCCEEE
T ss_pred EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe-cCCceEEEEEEE
Confidence 99999999999999998887764 4667899999999999999999999999999999988777653 4333 22333
Q ss_pred EcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe--CCCcEEEEeCC
Q 007757 480 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWK 549 (590)
Q Consensus 480 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--~dg~I~iwd~~ 549 (590)
..+++.+|++++.||.|++||+.+...+ ..+.+| ...+.+++|+|++++|++++ .|+.|++|+..
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIV---QKLQGH--TDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEE---EEECCC--SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhh---hhhhcc--CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 3467899999999999999999886554 445566 46788999999999999987 69999999864
No 75
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=325.84 Aligned_cols=333 Identities=10% Similarity=0.091 Sum_probs=242.9
Q ss_pred CcccCCcceeecccccccccceeecCCCccccCCCCccCCc-c-eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 249 GEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPK-R-LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 326 (590)
Q Consensus 249 ~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~-~-~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~i 326 (590)
...+.+...+...+..|..+|.|-.......... ++. . ....+.+|.+.|++|+|+|+++.+|++|+.||.| |
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~----i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-l 177 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK----LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-T 177 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE----ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-E
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCccccce----eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-E
Confidence 3456666667777888999999965432211000 000 0 0024578999999999999756899999999999 9
Q ss_pred EEccCCCeeEEEeccC------------------CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE--cc----
Q 007757 327 WDVVNSGKCMRTYMGH------------------SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--FS---- 382 (590)
Q Consensus 327 Wd~~~~~~~~~~~~~h------------------~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~--~~---- 382 (590)
||+ ..++++..+..| ...|++++|+|+|.+|++|+.||.|++||+.+++++.. +.
T Consensus 178 Wd~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~ 256 (902)
T 2oaj_A 178 YSL-VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI 256 (902)
T ss_dssp EET-TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCT
T ss_pred EEC-CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccccc
Confidence 999 677888888766 57899999999999999999999999999999887653 21
Q ss_pred C-------------CCCceEEEEecCC--CC-------------------------------------------------
Q 007757 383 T-------------GKIPYVVKLNPDD--DK------------------------------------------------- 398 (590)
Q Consensus 383 ~-------------~~~~~~~~~~~~~--~~------------------------------------------------- 398 (590)
. ...+..++|.+.. +.
T Consensus 257 ~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (902)
T 2oaj_A 257 NVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKI 336 (902)
T ss_dssp TSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEE
T ss_pred CCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEE
Confidence 0 1122333442210 00
Q ss_pred ---------------------------CcEEEEEEcCCcEEEEECCCCceEEE---------------------------
Q 007757 399 ---------------------------QNILLAGMSDKKIVQWDMNTKEITQE--------------------------- 424 (590)
Q Consensus 399 ---------------------------~~~lvsg~~dg~I~vwDl~t~~~~~~--------------------------- 424 (590)
...+++++.|+.|++||+.++.....
T Consensus 337 ~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~ 416 (902)
T 2oaj_A 337 FPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKL 416 (902)
T ss_dssp ECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHH
T ss_pred EecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHH
Confidence 11345555667788888766532211
Q ss_pred --------------EcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE----EEee------cCCCCcccEEEE
Q 007757 425 --------------YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI----KYIS------EPHMHSMPSISL 480 (590)
Q Consensus 425 --------------~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~----~~~~------~~~~~~i~~i~~ 480 (590)
+.+|...+.+++|+|++++|++|+.|++|++||+..+... .... ..|...|.+++|
T Consensus 417 w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svaf 496 (902)
T 2oaj_A 417 WLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISF 496 (902)
T ss_dssp HHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEE
T ss_pred HHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEe
Confidence 1223334445556788999999999999999999765321 1111 157788999999
Q ss_pred cCCCCEEEEEEcCCeEEEEEccCceee------------------------------------------cccccccCccc
Q 007757 481 HPNTNWLAAQSLDNQILIYSTRERFQL------------------------------------------NKKKRFAGHIV 518 (590)
Q Consensus 481 sp~g~~l~s~s~dg~I~iwd~~~~~~~------------------------------------------~~~~~~~~~~~ 518 (590)
+|++++||+|+.||+|+||++.+.... .....+.+|
T Consensus 497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h-- 574 (902)
T 2oaj_A 497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN-- 574 (902)
T ss_dssp ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC--
T ss_pred cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC--
Confidence 999999999999999999999765210 113344555
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-----Ee-cCCCCEEEEEEc-----CCC--CCEEEEEeCCCc
Q 007757 519 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-----LK-CHEGVCIGCEWH-----PLE--QSKVATCGWDGL 585 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~-----l~-~h~~~V~~v~~s-----p~~--~~~l~s~g~DG~ 585 (590)
.+.|++++||||| +||+|+.|++|+|||+.+...+.. +. +|...|++++|+ |++ +.+|++|+.||+
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 5779999999999 999999999999999998877652 22 788899999999 843 479999999999
Q ss_pred EEEeC
Q 007757 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|++||
T Consensus 654 v~~wd 658 (902)
T 2oaj_A 654 VITYK 658 (902)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 76
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-33 Score=292.73 Aligned_cols=270 Identities=17% Similarity=0.211 Sum_probs=198.3
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC------CCeEEEEECCCCcEEE
Q 007757 306 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIR 379 (590)
Q Consensus 306 ~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~------Dg~I~vWd~~t~~~~~ 379 (590)
.+.+. .+++.++.+.....|++. .. ....|...|++++|+|||++|++|+. |+.|++|+..++....
T Consensus 12 d~g~~--~~~~~~~g~~~~~~w~~p-~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 12 DLGTE--NLYFQSNGSSKGSAWGRP-VT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCcc--ceEEecCCCccccccCCC-CC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 34444 455666667888999982 22 23579999999999999999999997 7889999988775433
Q ss_pred E-----ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE----EEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 380 T-----FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT----QEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 380 ~-----~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~----~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
. ......+.+++|.+++ .+++++.||.|++||+.+++.. ....+|...|++++|+|++++|++++.|
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~----~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEK----GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTT----EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred eEecccCCCCCCEEEEEEcCCC----CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 2 2334456778888753 4778899999999999987643 2345799999999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
+.|++||++++..+..+. .|...|.+++|+|++. +|++++.|+.|++||+++....... ..+.....+.+++|+|
T Consensus 161 g~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---DFCASDTIPTSVTWHP 236 (357)
T ss_dssp SCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---CCTTCCSCEEEEEECT
T ss_pred CeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---eeccccccccchhhhh
Confidence 999999999998887774 5889999999999875 7899999999999999876544332 2222356788999999
Q ss_pred C-CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 530 D-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 d-g~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+ +.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++..+|++|+.||+|+|||
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred cccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 7 568999999999999999999999999999999999999997778999999999999998
No 77
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.1e-33 Score=283.02 Aligned_cols=292 Identities=17% Similarity=0.242 Sum_probs=216.8
Q ss_pred eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC---eeEEEeccCCCceeEEEEec--CCCEEEEEeCCC
Q 007757 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG---KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDK 365 (590)
Q Consensus 291 ~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~---~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg 365 (590)
+.+.+.+|.+.|++++|+|+ +.+|++|+.||.|+||++.... ..+..+.+|...|++++|+| ++++|++++.||
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CCCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 34567899999999999999 9999999999999999994322 56778889999999999999 699999999999
Q ss_pred eEEEEECCCC---------cEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc---------
Q 007757 366 NIKYWDTETG---------QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--------- 426 (590)
Q Consensus 366 ~I~vWd~~t~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~--------- 426 (590)
.|++||+.++ +.+..+.. ...+..+.+.+.. .+.+|++++.||.|++||+++++.+..+.
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH-LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCC-CCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 9999999987 44555543 3445667777651 13789999999999999999876543322
Q ss_pred ----ccCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcCCC----CEEEEEEcCC
Q 007757 427 ----QHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNT----NWLAAQSLDN 494 (590)
Q Consensus 427 ----~h~~~V~~i~~~p~---~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g----~~l~s~s~dg 494 (590)
.|...+.++.|+|+ +..|++++.++.+.+|+....... ......|...|.+++|+|++ .+|++++.||
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 57889999999997 899999999999988887766542 22234588899999999998 8999999999
Q ss_pred eEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEc
Q 007757 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 495 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg----s~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~s 570 (590)
.|++||++......... .. ........+++....+..+ .....+.+|+....+++..+.+|...|++++|+
T Consensus 241 ~i~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASE---ES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp CEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred eEEEEeCCCCcCccccC---Cc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 99999998653322111 11 1112223334444444333 345567778878888999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEeC
Q 007757 571 PLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 571 p~~~~~l~s~g~DG~I~iWD 590 (590)
| ++.+|++|+.||.|+|||
T Consensus 316 ~-~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 316 L-TGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp S-SSCCEEEEETTSCEEEEE
T ss_pred C-CCCEEEEecCCCcEEEEe
Confidence 9 678999999999999996
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-32 Score=310.44 Aligned_cols=293 Identities=19% Similarity=0.337 Sum_probs=235.7
Q ss_pred cCCCCCCcccCC-cceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007757 243 NAGGEKGEHVED-KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 243 ~~~~~~~~~~~~-~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~D 321 (590)
|.+........+ ...++.+++.|..+|.|-..... .....+.+.+.+|...|++++|+|+ +++|++|+.|
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~--------~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~D 451 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDD--------KAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWD 451 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCST--------TCSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETT
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCC--------cccccccceecCCCCcEEEEEECCC-CCEEEEEeCC
Confidence 333344444443 34677889999999999654322 1123456789999999999999999 9999999999
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC--C--CCceEEEEecCCC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--G--KIPYVVKLNPDDD 397 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~--~--~~~~~~~~~~~~~ 397 (590)
|+|+|||+ ..+.+++.+.+|...|.+++|+|++++|++|+.|++|+|||+........... + ..+.++.++++..
T Consensus 452 g~v~vwd~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 452 GELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp SEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred CcEEEEEC-CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 99999999 68889999999999999999999999999999999999999876544433321 2 2355677776542
Q ss_pred CCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccE
Q 007757 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
..++++|+.|+.|++||++++++...+.+|.+.|++++|+|++++|++++.||.|++||++++..+..+. +...+.+
T Consensus 531 -~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~ 607 (694)
T 3dm0_A 531 -QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHA 607 (694)
T ss_dssp -SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEE
T ss_pred -cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEE
Confidence 3689999999999999999999999999999999999999999999999999999999999988776653 4567999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccC--------------cccccceEEEEEcCCCCEEEEEeCCCcE
Q 007757 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG--------------HIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 478 i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--------------~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
++|+|++.+|++++ ++.|++||+.+...+........ ......+++++|+|+|++|++|+.||.|
T Consensus 608 ~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i 686 (694)
T 3dm0_A 608 LCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686 (694)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence 99999998887765 66799999988765543321100 0011246789999999999999999999
Q ss_pred EEEeCC
Q 007757 544 WFWDWK 549 (590)
Q Consensus 544 ~iwd~~ 549 (590)
+||++.
T Consensus 687 ~iW~i~ 692 (694)
T 3dm0_A 687 RVWGIG 692 (694)
T ss_dssp EEEEC-
T ss_pred EEEecc
Confidence 999975
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=284.78 Aligned_cols=260 Identities=20% Similarity=0.338 Sum_probs=213.4
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC-CCeeEEEeccCCCceeEEEEecC--CCEEEEEeCCCe
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKN 366 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~ 366 (590)
+++.++.+|.+.|++++|+|+ +++|++|+.||.|+||++.. ....+..+.+|...|++++|+++ +++|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 356788999999999999999 89999999999999999942 45777889999999999999976 999999999999
Q ss_pred EEEEECCCCc--EEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC--ceEEEEcccCCceeEEEEeC--
Q 007757 367 IKYWDTETGQ--VIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVD-- 439 (590)
Q Consensus 367 I~vWd~~t~~--~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~--~~~~~~~~h~~~V~~i~~~p-- 439 (590)
|++||+.+++ .+..+.. ...+.++.+.+... +.+|++++.|+.|++||++++ .....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCC-CCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 9999999987 4555543 34566777776521 368999999999999999987 34556778999999999999
Q ss_pred -----------CCCEEEEEeCCCcEEEEECCCCcE---EEEeecCCCCcccEEEEcCC---CCEEEEEEcCCeEEEEEcc
Q 007757 440 -----------SNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPN---TNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 440 -----------~~~~l~s~s~Dg~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~---g~~l~s~s~dg~I~iwd~~ 502 (590)
++.+|++++.|+.|++||++.... .......|...|.+++|+|+ +.+|++++.||.|++||+.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 699999999999999999976542 22233468889999999999 8999999999999999998
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
...................+.+++|+|+|++|++++.||.|++|++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 7532222222222223567889999999999999999999999998743
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-32 Score=277.08 Aligned_cols=251 Identities=20% Similarity=0.287 Sum_probs=203.5
Q ss_pred EEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC--cEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEE
Q 007757 336 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
+..+.+|...|++++|+|+|++|++|+.|++|+|||+.+. +++..+..+ ..+..+.|.+.. .+.+|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEE
Confidence 3457799999999999999999999999999999999753 556666543 344556665431 247899999999999
Q ss_pred EEECCCCc--eEEEEcccCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcCC----
Q 007757 413 QWDMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPN---- 483 (590)
Q Consensus 413 vwDl~t~~--~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~---- 483 (590)
+||+++++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++..... ......|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99999874 56778889999999999997 889999999999999999865321 2233468889999999997
Q ss_pred ---------CCEEEEEEcCCeEEEEEccCcee-ecccccccCcccccceEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 007757 484 ---------TNWLAAQSLDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFSPDG---RFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 484 ---------g~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~v~~v~~spdg---~~l~sgs~dg~I~iwd~~t 550 (590)
+++|++++.|+.|++||++.... ......+.+| ...|.+++|+|++ .+|++|+.|+.|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 57999999999999999976532 1123456667 5679999999985 8999999999999999977
Q ss_pred Ce---EEEEE--ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 551 CK---VFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 ~~---~~~~l--~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.. ....+ ..|...|.+++|+| ++.+|++++.||.|+||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEE
T ss_pred CCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence 43 12233 46788999999999 678999999999999995
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.2e-33 Score=291.61 Aligned_cols=282 Identities=19% Similarity=0.287 Sum_probs=229.0
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe---eEEEeccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCCC-
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETG- 375 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~- 375 (590)
....++++|+...++++++.||.|+||++...+. .+..+.+|...|++++|+| ++++|++|+.||.|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 4556889998445566789999999999954443 4556789999999999999 9999999999999999999987
Q ss_pred ------cEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE--cccCCceeEEEEeCCCCEEEE
Q 007757 376 ------QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTITFVDSNRRFVT 446 (590)
Q Consensus 376 ------~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~--~~h~~~V~~i~~~p~~~~l~s 446 (590)
+.+..+.. ...+.++.|++++ .++|++|+.|+.|++||+++++.+..+ ..|...|.+++|+|++++|++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTA--QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSB--TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCC--CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 44555543 3455667777654 368999999999999999999999999 889999999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeecCCCCc-ccEEEEcCCCCEEEEE---EcCCeEEEEEccCceeecccccccCcccccce
Q 007757 447 SSDDKSLRVWEFGIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQ---SLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 447 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~-i~~i~~sp~g~~l~s~---s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
++.|+.|++||++....+..+...|... +.++.|+|++.+|+++ +.|+.|++||+++.........+. + ...+
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~v 270 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD-T--SSGV 270 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC-C--CSSC
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc-C--CCce
Confidence 9999999999999998888874456554 8999999999999999 789999999998754422222211 2 3557
Q ss_pred EEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeE-EEEEec--CCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 523 CQVNFSPDGRFVM-SGDGEGKCWFWDWKSCKV-FRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 523 ~~v~~spdg~~l~-sgs~dg~I~iwd~~t~~~-~~~l~~--h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..++|+|++++|+ +|+.||.|++||+.+++. +..+.. |...|.+++|+| ++.++++ .|+.+++|+
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-GGGSCGG--GTEEEEEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-cccccee--cceeEEEEE
Confidence 8899999999996 556799999999999874 555544 458999999999 5555553 577999995
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-31 Score=307.33 Aligned_cols=322 Identities=16% Similarity=0.271 Sum_probs=261.5
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007757 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg 322 (590)
+.+......+++...+......|..++.|-. ...+.+.++.+|.+.|++++|+|+ +++|++|+.||
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~-------------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 77 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNY-------------ETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDF 77 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEET-------------TTTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTS
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEEC-------------CCCceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCC
Confidence 3444555667777778888888888888843 334678899999999999999999 99999999999
Q ss_pred cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEccC-CCCceEEEEecCCCCCc
Q 007757 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFST-GKIPYVVKLNPDDDKQN 400 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 400 (590)
.|+|||+ .+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++ .....+.. ...+.++.|+|. .+.
T Consensus 78 ~i~vw~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~ 154 (814)
T 3mkq_A 78 RIRVFNY-NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--DPS 154 (814)
T ss_dssp EEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT--EEE
T ss_pred eEEEEEC-CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC--CCC
Confidence 9999999 688899999999999999999999999999999999999999987 55555543 344567777762 236
Q ss_pred EEEEEEcCCcEEEEECCCCceEEEEcccC-CceeEEEEeC--CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccE
Q 007757 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 477 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t~~~~~~~~~h~-~~V~~i~~~p--~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~ 477 (590)
.|++++.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++++.||.|++||+.....+..+. .|...|.+
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~ 233 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSF 233 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEE
Confidence 89999999999999999988777776555 8999999999 99999999999999999999988877775 48889999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCe---
Q 007757 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKSCK--- 552 (590)
Q Consensus 478 i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~--~l~sgs~dg~I~iwd~~t~~--- 552 (590)
++|+|++.+|++++.||.|++||+.+...... +..+ ...+.+++|+|+|. ++++++ ++.+.+|++....
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~---~~~~--~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 307 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT---LNVG--LERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTL 307 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEE---ECCS--SSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE---eecC--CCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCcee
Confidence 99999999999999999999999987655433 3333 35688899999987 455555 6668888865432
Q ss_pred -------EEE---------------------------------EEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 553 -------VFR---------------------------------TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 553 -------~~~---------------------------------~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+. .+..+...+.+++|+| ++.+|++++ ||.+.+|+
T Consensus 308 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 308 SLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp EECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEE
T ss_pred EECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEE
Confidence 221 1122344578899999 677888887 88898885
No 83
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-31 Score=271.17 Aligned_cols=286 Identities=19% Similarity=0.283 Sum_probs=240.6
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 007757 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 322 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg 322 (590)
+.+......+.+...+......|...+.|-. ...+.+.++.+|...|++++|+|+ +++|++++.||
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~-------------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg 96 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYS-------------LNGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADY 96 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEET-------------TTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTT
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeC-------------CCchhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCC
Confidence 4444555566666677778888888888843 234678899999999999999998 89999999999
Q ss_pred cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC-----CeEEEEECCCCcEE-----------EEccC-CC
Q 007757 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQVI-----------RTFST-GK 385 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D-----g~I~vWd~~t~~~~-----------~~~~~-~~ 385 (590)
.|++||+ ..++++..+. |...|.+++|+|++++|++++.+ +.|++||+.++... ..+.. ..
T Consensus 97 ~i~iwd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 97 SIKLWDV-SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EEEEEET-TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred eEEEEEC-CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 9999999 6778888877 88999999999999999999999 99999999765321 11111 11
Q ss_pred --CceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-CceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 007757 386 --IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 386 --~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
...++.+.+++ .+|++++.||.|++||+++ +..+..+..|...|.+++|+|++++|++++.|+.|++||+++..
T Consensus 175 ~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 175 LDAATVAGWSTKG---KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp CCCEEEEEECGGG---CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ccceeEEEEcCCC---CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 55667777644 6899999999999999999 78888999999999999999999999999999999999999998
Q ss_pred EEEEeecCCCCcccEEEEcCCCCEEEEEEcCC--------------eEEEEEccCceeecccccccCcccccceEEEEEc
Q 007757 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--------------QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 463 ~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
.+..+. +...+.+++|+|++.++++++.++ .|++||+.+...+. .+.+| ...|.+++|+
T Consensus 252 ~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~--~~~v~~~~~s 324 (369)
T 3zwl_B 252 VLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG---RVQGH--FGPLNTVAIS 324 (369)
T ss_dssp EEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE---EEECC--SSCEEEEEEC
T ss_pred eeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh---heecc--cCcEEEEEEC
Confidence 888775 677899999999999999999988 89999998876553 34555 4678899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEE
Q 007757 529 PDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
|++++|++|+.||.|+||++..+...
T Consensus 325 ~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 325 PQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp TTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred CCCCEEEEEcCCCeEEEEECccccch
Confidence 99999999999999999999876543
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.7e-32 Score=282.34 Aligned_cols=296 Identities=9% Similarity=0.140 Sum_probs=239.0
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCC---CC---CEEE
Q 007757 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK---YG---HLIL 316 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~---~g---~~L~ 316 (590)
+.+.+....+.+ .+..++..|...+.|-..... ...+..++..+.+|...|++++|+|+ ++ .+|+
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLD-------NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCT-------TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcc-------cccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 444444455555 566778889999999654332 22345678889999999999999997 46 8999
Q ss_pred EEeCCCcEEEEEccCCCee-----EEEeccC-----CCceeEEEEe----cCCCE-EEEEeCCCeEEEEECCC------C
Q 007757 317 SAGMDTKVKIWDVVNSGKC-----MRTYMGH-----SKAVRDISFC----NDGTK-FLTASYDKNIKYWDTET------G 375 (590)
Q Consensus 317 sgs~Dg~I~iWd~~~~~~~-----~~~~~~h-----~~~V~~l~fs----pdg~~-l~s~s~Dg~I~vWd~~t------~ 375 (590)
+++.||.|++|++ ..+.. +..+..| ...|.+++|+ |++++ |++++.||.|++||+.+ +
T Consensus 86 s~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 86 TTSFSGDLLFYRI-TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEETTSCEEEEEE-EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEcCCCCEEEEEc-cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999 45555 7888888 5999999999 99999 99999999999999988 6
Q ss_pred cEEE-----Ecc--------CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc---c---CCceeEEE
Q 007757 376 QVIR-----TFS--------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---H---LGAVNTIT 436 (590)
Q Consensus 376 ~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~---h---~~~V~~i~ 436 (590)
+.+. .+. ....+.++.+.+++ ++++|+.|+.|++||+++++.+..+.. | ...|.+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc----eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 5544 443 24556677777643 899999999999999999999999998 9 99999999
Q ss_pred EeCCCCEEEEEeCC---CcEEEEECCCCcEEEEeecC------------CCCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 437 FVDSNRRFVTSSDD---KSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 437 ~~p~~~~l~s~s~D---g~I~iwdl~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
|+|++++|++++.| +.|++||+++...+..+..+ |...|.+++|+|++.+|++++.||.|++||+
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99999999999999 99999999998888777542 7889999999999999999999999999999
Q ss_pred cCceeeccccccc---Cc-------------ccccceEEEEEcCCC----------CEEEEEeCCCcEEEEeCCCCe
Q 007757 502 RERFQLNKKKRFA---GH-------------IVAGYACQVNFSPDG----------RFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 502 ~~~~~~~~~~~~~---~~-------------~~~~~v~~v~~spdg----------~~l~sgs~dg~I~iwd~~t~~ 552 (590)
.+...+..+.... +| .....|.+++|+|+| ++|++|+.||.|++|++.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8876654443100 22 014678999999998 799999999999999998764
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.5e-32 Score=279.81 Aligned_cols=246 Identities=15% Similarity=0.289 Sum_probs=208.0
Q ss_pred CCCCeeEEEEcCCC---CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECC
Q 007757 298 HTKGVSAIRFFPKY---GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 298 H~~~V~~l~fsp~~---g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~ 373 (590)
|...|++++|+|+. +.+|++|+.||.|+|||+ ..++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP-ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT-TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc-hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 77889999999984 359999999999999999 67888999999999999999999 99999999999999999999
Q ss_pred CCcEEEEcc----CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc-----------------------
Q 007757 374 TGQVIRTFS----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD----------------------- 426 (590)
Q Consensus 374 t~~~~~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~----------------------- 426 (590)
+++.+..+. ....+..+.+++++ .+|++++.||.|++||+++++....+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLG---EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTS---SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred cCeEEEEecccccccCceeEEEECCCC---CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 999988873 34455667776643 689999999999999999876543333
Q ss_pred -----ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--------------EEEeecCCCCcccEEEEcCC--CC
Q 007757 427 -----QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--------------IKYISEPHMHSMPSISLHPN--TN 485 (590)
Q Consensus 427 -----~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~--------------~~~~~~~~~~~i~~i~~sp~--g~ 485 (590)
.|...|.++.|+ +++|++++.|+.|++||++.... +..+ ..|...|.+++|+|+ +.
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCDIWYMRFSMDFWQK 300 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCCSSCCCCEECTTSS
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCcEEEEEEcCCCCCc
Confidence 399999999998 77999999999999999876533 4443 357888999999999 99
Q ss_pred EEEEEEcCCeEEEEEccCceeec-ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 486 WLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 486 ~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
+|++++.||.|++||+.+..... ....+.+|.....|.+++|+|++++|++|+.||.|++||+.+
T Consensus 301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999999999998765433 233455664467899999999999999999999999999853
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.8e-31 Score=271.30 Aligned_cols=288 Identities=14% Similarity=0.158 Sum_probs=231.8
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007757 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I 324 (590)
+......+.+...+......|...+.|-..... .+++..+.+|...|++++|+|+ +++|++++.||.|
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i 76 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----------WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNA 76 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----------EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeE
Confidence 344555566666677777788888888442210 1277889999999999999998 9999999999999
Q ss_pred EEEEccCCCeeEE--EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE---EEEccC--CCCceEEEEecCCC
Q 007757 325 KIWDVVNSGKCMR--TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFST--GKIPYVVKLNPDDD 397 (590)
Q Consensus 325 ~iWd~~~~~~~~~--~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~---~~~~~~--~~~~~~~~~~~~~~ 397 (590)
++||+ ..++... .+..|...|.+++|+|++++|++++.|+.|++||+.++.. ...+.. ...+.++.+.+++
T Consensus 77 ~vwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 154 (372)
T 1k8k_C 77 YVWTL-KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS- 154 (372)
T ss_dssp EEEEE-ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-
T ss_pred EEEEC-CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-
Confidence 99999 4555433 3467999999999999999999999999999999988762 333333 3445566666643
Q ss_pred CCcEEEEEEcCCcEEEEEC------------------CCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007757 398 KQNILLAGMSDKKIVQWDM------------------NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl------------------~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
.+|++|+.|+.|++||+ ..++.+..+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 155 --~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 155 --VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp --SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred --CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 68999999999999995 4678888898999999999999999999999999999999999
Q ss_pred CCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC--cee--e-----------------c----------
Q 007757 460 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE--RFQ--L-----------------N---------- 508 (590)
Q Consensus 460 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~--~~~--~-----------------~---------- 508 (590)
+...+..+. .+...+.+++|+|++.+|+++ .|+.|++|++.. +.- . .
T Consensus 233 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 233 KKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp GTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred CCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 998888776 477899999999999988887 899999999977 310 0 0
Q ss_pred c-------cccccCcccccceEEEEEc-CCC---CEEEEEeCCCcEEEEeCCCCe
Q 007757 509 K-------KKRFAGHIVAGYACQVNFS-PDG---RFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 509 ~-------~~~~~~~~~~~~v~~v~~s-pdg---~~l~sgs~dg~I~iwd~~t~~ 552 (590)
. .....+| ...|.+++|+ ++| .+|++|+.||.|++||+.+++
T Consensus 311 ~~~~~~~~~~~~~~h--~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 311 SEGSAAAGAGLDSLH--KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp --------CCCSSSS--SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccCccccccccccc--cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 0 1111355 5678999865 677 999999999999999987654
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=275.55 Aligned_cols=294 Identities=12% Similarity=0.125 Sum_probs=225.2
Q ss_pred cCCCCCCcccCCcc-eeeccccc---ccccceeecCCCccccCCCCccCCcceeE-EecCCCCCeeEEEEcCCC--CCEE
Q 007757 243 NAGGEKGEHVEDKS-TFHGKEET---DYQGRSWIAPPKDAKAANDHCYIPKRLVH-TWSGHTKGVSAIRFFPKY--GHLI 315 (590)
Q Consensus 243 ~~~~~~~~~~~~~s-~~~~~~~~---d~~~r~w~~~~~~~~~~~~~~~~p~~~v~-~l~gH~~~V~~l~fsp~~--g~~L 315 (590)
+........+.+.. .+...+.. |...+.|-.... ++.. ...+|...|++++|+|+. +.+|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 83 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-------------DLKLLREIEKAKPIKCGTFGATSLQQRYL 83 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS-------------SEEEEEEEEESSCEEEEECTTCCTTTCCE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC-------------cccceeeecccCcEEEEEEcCCCCCCceE
Confidence 33344445555544 45555554 888888854322 2222 233899999999999984 6999
Q ss_pred EEEeCCCcEEEEEccCCCe-eEEEeccCCCceeEEEE------ecCCCEEEEEeCCCeEEEEECCCCc-EEEEccCCC--
Q 007757 316 LSAGMDTKVKIWDVVNSGK-CMRTYMGHSKAVRDISF------CNDGTKFLTASYDKNIKYWDTETGQ-VIRTFSTGK-- 385 (590)
Q Consensus 316 ~sgs~Dg~I~iWd~~~~~~-~~~~~~~h~~~V~~l~f------spdg~~l~s~s~Dg~I~vWd~~t~~-~~~~~~~~~-- 385 (590)
++|+.||.|++||+. .+. .+..+.+|...|.++.| +|++++|++++.||.|++||+.++. .+..+....
T Consensus 84 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLE-APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162 (357)
T ss_dssp EEEETTSCEEEECTT-SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred EEecCCCeEEEEeCC-CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence 999999999999994 444 88999999999999965 6789999999999999999999886 566654322
Q ss_pred ---CceEEEEec-CCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeC---CCCEEEEEeCCCcEEEEEC
Q 007757 386 ---IPYVVKLNP-DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 386 ---~~~~~~~~~-~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl 458 (590)
....+.+.+ ....+.++++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++.||.|++||+
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 334444322 223457999999999999999999987554 56889999999999 8999999999999999999
Q ss_pred CCCcEEEEe----ecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEccCceee----------------cccccccCcc
Q 007757 459 GIPVVIKYI----SEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQL----------------NKKKRFAGHI 517 (590)
Q Consensus 459 ~~~~~~~~~----~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~----------------~~~~~~~~~~ 517 (590)
+.......+ ...|...|.+++|+|++. +|++++.||.|++||++..... .....+.+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 320 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS- 320 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-
Confidence 765433222 136888999999999998 8999999999999999764322 233445555
Q ss_pred cccceEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeE
Q 007757 518 VAGYACQVNFSPDGRFVM-SGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~-sgs~dg~I~iwd~~t~~~ 553 (590)
...|.+++|+|+|++|+ +|+.||.|+|||+.+.+.
T Consensus 321 -~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 321 -TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp -SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred -CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 56789999999999998 899999999999987654
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-30 Score=277.30 Aligned_cols=281 Identities=14% Similarity=0.163 Sum_probs=228.0
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe---eEEEecc----------------------------------
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK---CMRTYMG---------------------------------- 341 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~---------------------------------- 341 (590)
..+|++|+|+|+ |++|+++ .++.|++||+ .+++ .+..+..
T Consensus 4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKY-QSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp ECCCCEEEECSS-SSEEEEE-ETTEEEEEEE-ETTTEEEEEEEEECCC--------------------------------
T ss_pred cccEEEEEecCC-CCEEEEE-eCCeEEEEEC-CCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 357999999999 7766665 5789999999 4565 5555543
Q ss_pred --------------------CCCceeEEEEecCCCEE-EEEeCCCeEEEEECC--CCcEEEEcc---CCCCceEEEEecC
Q 007757 342 --------------------HSKAVRDISFCNDGTKF-LTASYDKNIKYWDTE--TGQVIRTFS---TGKIPYVVKLNPD 395 (590)
Q Consensus 342 --------------------h~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~--t~~~~~~~~---~~~~~~~~~~~~~ 395 (590)
|...|++++|+|++++| ++++.||.|+|||+. +++++..+. ....+.++.|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 34479999999999996 889999999999999 888887774 3355667777775
Q ss_pred CCCCcEEEEEEcCCcEEEEECCCCceEE----EEcccCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCCCcEEEEee
Q 007757 396 DDKQNILLAGMSDKKIVQWDMNTKEITQ----EYDQHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~vwDl~t~~~~~----~~~~h~~~V~~i~~~p~---~~~l~s~s~Dg~I~iwdl~~~~~~~~~~ 468 (590)
+ .+|++|+.+|.|++|++.++.... .+.+|...|++++|+|+ +++|++++.|+.|++||++....+..+.
T Consensus 161 ~---~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 161 D---TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp S---SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred C---CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 4 689999999999999998876543 66789999999999999 9999999999999999999988887766
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccccc--------Cc------------ccccceEEEEEc
Q 007757 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA--------GH------------IVAGYACQVNFS 528 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--------~~------------~~~~~v~~v~~s 528 (590)
..|...|.+++|+ ++.+|++++.|+.|++||+.++..+..+.... .+ .....+..++|+
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 6789999999999 99999999999999999998876554332110 00 123457889999
Q ss_pred CCCCEEEEEe-CCCcEEEEeC--CCC---eEEEEEecCCCCEEEEEEcCCCCCEEEEEeC-------CCcEEEe
Q 007757 529 PDGRFVMSGD-GEGKCWFWDW--KSC---KVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-------DGLIKYW 589 (590)
Q Consensus 529 pdg~~l~sgs-~dg~I~iwd~--~t~---~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~-------DG~I~iW 589 (590)
|++++|++++ .++.|+||++ .++ +.+..+..| +.|.+++|+| +. ++++++. +..|.||
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEEEecccCCCCCCcceEEE
Confidence 9999999998 8999999999 565 778888888 7899999999 54 5555443 4557777
No 89
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-31 Score=272.33 Aligned_cols=253 Identities=20% Similarity=0.291 Sum_probs=207.5
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC--CCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCc
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~--t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
+++..+.+|...|++++|+|++++|++|+.||.|+|||+. +++.+..+..+ ..+.++.|.+.. .+.+|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-CCCEEEEeccCCE
Confidence 4566788999999999999999999999999999999998 55666666543 345566666542 2478999999999
Q ss_pred EEEEECCCCc--eEEEEcccCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcC---
Q 007757 411 IVQWDMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHP--- 482 (590)
Q Consensus 411 I~vwDl~t~~--~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp--- 482 (590)
|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++..... ......|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999987 77788889999999999999 999999999999999999876322 222346888999999999
Q ss_pred ----------CCCEEEEEEcCCeEEEEEccCceee-cccccccCcccccceEEEEEcCC---CCEEEEEeCCCcEEEEeC
Q 007757 483 ----------NTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 483 ----------~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~v~~spd---g~~l~sgs~dg~I~iwd~ 548 (590)
++.+|++++.|+.|++||++..... .....+.+| ...+.+++|+|+ +++|++++.||.|+|||+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999999999999999765432 223345555 567899999999 899999999999999999
Q ss_pred CCCe---EEEEE--ecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 549 KSCK---VFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 549 ~t~~---~~~~l--~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.++. ....+ ..|...|.+++|+| ++.+|++++.||.|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEe
Confidence 8864 22222 23788999999999 677999999999999996
No 90
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-30 Score=270.89 Aligned_cols=274 Identities=17% Similarity=0.216 Sum_probs=221.3
Q ss_pred cccccccccceeecCCCccccCCCCccCCcceeEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEE
Q 007757 260 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT 338 (590)
Q Consensus 260 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~g-H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~ 338 (590)
.....|...+.|-.. ..++...+.. |...|++++|+|+ +.+|++|+.||.|+|||+ ..++.+..
T Consensus 107 ~~~~~d~~v~lw~~~-------------~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~-~~~~~~~~ 171 (401)
T 4aez_A 107 VAVALERNVYVWNAD-------------SGSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDV-ESQTKLRT 171 (401)
T ss_dssp EEEEETTEEEEEETT-------------TCCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEE
T ss_pred EEEECCCeEEEeeCC-------------CCcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEEC-cCCeEEEE
Confidence 344567788888543 2344455554 8999999999998 999999999999999999 67889999
Q ss_pred eccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC-CcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC
Q 007757 339 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl 416 (590)
+.+|...|.+++|+ +.+|++++.||.|++||++. +..+..+.. ...+..+.++++ +.+|++|+.|+.|++||+
T Consensus 172 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 172 MAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD---GLQLASGGNDNVVQIWDA 246 (401)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEET
T ss_pred ecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC---CCEEEEEeCCCeEEEccC
Confidence 99999999999994 67999999999999999984 555555543 344556677664 378999999999999999
Q ss_pred CCCceEEEEcccCCceeEEEEeCCCC-EEEEEe--CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE--
Q 007757 417 NTKEITQEYDQHLGAVNTITFVDSNR-RFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-- 491 (590)
Q Consensus 417 ~t~~~~~~~~~h~~~V~~i~~~p~~~-~l~s~s--~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-- 491 (590)
++++.+..+..|...|.+++|+|++. .+++++ .|+.|++||+.+...+..+. +...+.+++|+|++.+|++++
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~ 324 (401)
T 4aez_A 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGF 324 (401)
T ss_dssp TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECT
T ss_pred CCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeec
Confidence 99999999999999999999999765 555554 69999999999998888774 567899999999999999955
Q ss_pred cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 007757 492 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
.||.|++|++.+..... ...+.+| ...+.+++|+|+|++|++++.||.|++|++.+++.+....
T Consensus 325 ~dg~i~v~~~~~~~~~~-~~~~~~h--~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 325 PDNNLSIWSYSSSGLTK-QVDIPAH--DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp TTCEEEEEEEETTEEEE-EEEEECC--SSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCCcEEEEecCCcccee-EEEecCC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 89999999998754332 2234455 4678889999999999999999999999999998876554
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=9.4e-32 Score=293.21 Aligned_cols=273 Identities=11% Similarity=0.054 Sum_probs=203.9
Q ss_pred CcceeEEecCCCCCeeEEEEcCCC-C-------CEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEE
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKY-G-------HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL 359 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~-g-------~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~ 359 (590)
+.++..++. +.+.|.+|+|+|+. + ++||+|+.++.. ...+|+++.|+
T Consensus 123 ~~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------~~~~~~~~~la 177 (524)
T 2j04_B 123 GKRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------EPLNEHLEMFD 177 (524)
T ss_dssp CCSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred CCcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------Cccchhhhhhc
Confidence 455666665 78999999999983 1 789998866420 01368999999
Q ss_pred EEeCCCeEEEEECCCCcEE----EEccC-CCCceEEEEecCC---CCCcEEEEEEcCCcEEEEECCCCce----------
Q 007757 360 TASYDKNIKYWDTETGQVI----RTFST-GKIPYVVKLNPDD---DKQNILLAGMSDKKIVQWDMNTKEI---------- 421 (590)
Q Consensus 360 s~s~Dg~I~vWd~~t~~~~----~~~~~-~~~~~~~~~~~~~---~~~~~lvsg~~dg~I~vwDl~t~~~---------- 421 (590)
+++.|++|+|||+.++++. ..+.. ...+..++|+|.. ....+|++++.||.|++||+.++..
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 9999999999999887642 22333 3456778888862 1246899999999999999987642
Q ss_pred -EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEE--EEcCCC-CEEEEEEcCCeEE
Q 007757 422 -TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI--SLHPNT-NWLAAQSLDNQIL 497 (590)
Q Consensus 422 -~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i--~~sp~g-~~l~s~s~dg~I~ 497 (590)
...+.+|...|++++|+++ ..|++|+.||+|++||++++.........|...|.+| +|+|++ .+|++++.|++|+
T Consensus 258 p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp CSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred ceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 2467889999999999986 4899999999999999986543322234688999999 567887 8999999999999
Q ss_pred EEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEE
Q 007757 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 577 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l 577 (590)
|||+++..... .+.+|.....+.+++|+|+++.|++++.|+.|++||++++.++.++.+|.+.|.+|+|+| ++.+|
T Consensus 337 lWD~~~~~~~~---~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l 412 (524)
T 2j04_B 337 IFNPKDIATTK---TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMV 412 (524)
T ss_dssp EECGGGHHHHC---EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBC
T ss_pred EEECCCCCccc---ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeE
Confidence 99998765432 233343223466799999999999999999999999999999889999999999999999 67799
Q ss_pred EEEeCCCcEEEeC
Q 007757 578 ATCGWDGLIKYWD 590 (590)
Q Consensus 578 ~s~g~DG~I~iWD 590 (590)
++|+.||+|+|||
T Consensus 413 ~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 413 LAGSADGSLIITN 425 (524)
T ss_dssp EEEETTTEEECCB
T ss_pred EEEECCCEEEEEe
Confidence 9999999999997
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=2.1e-30 Score=271.48 Aligned_cols=331 Identities=14% Similarity=0.186 Sum_probs=224.3
Q ss_pred cCCCCCCcccCC-cceeecccccccccceeecCCCccccCCCCccCCcceeE-----EecCCCCCeeEEEEcCCCCCEEE
Q 007757 243 NAGGEKGEHVED-KSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVH-----TWSGHTKGVSAIRFFPKYGHLIL 316 (590)
Q Consensus 243 ~~~~~~~~~~~~-~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~-----~l~gH~~~V~~l~fsp~~g~~L~ 316 (590)
+.+......+.+ ...+..+...|...+.|-........ ........ ...+|...|++++|+|+++.+|+
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-----CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-----eEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 344455566776 67777888889999999654332110 00001111 12469999999999996588999
Q ss_pred EEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecC---CCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEE
Q 007757 317 SAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND---GTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKL 392 (590)
Q Consensus 317 sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspd---g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~ 392 (590)
+++.||.|++||+ ..+..+..+. +...+.++.|++. +.+|++++.|+.|++||+.+++.+..+..+ ..+.++.+
T Consensus 117 s~~~d~~i~iwd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~ 194 (408)
T 4a11_B 117 SSSFDKTLKVWDT-NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW 194 (408)
T ss_dssp EEETTSEEEEEET-TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEE
T ss_pred EEeCCCeEEEeeC-CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEE
Confidence 9999999999999 5777777665 7888999999994 459999999999999999999888887643 44566777
Q ss_pred ecCCCCCcEEEEEEcCCcEEEEECCCCc-eEEEE---------------cccCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007757 393 NPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEY---------------DQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 393 ~~~~~~~~~lvsg~~dg~I~vwDl~t~~-~~~~~---------------~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
.+++ ..+|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++++|++++.||.|++|
T Consensus 195 ~~~~--~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 195 SPRY--DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp CSSC--TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCC--CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 7654 3589999999999999998875 44444 4688999999999999999999999999999
Q ss_pred ECCCCcEEEEeec----CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 457 EFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 457 dl~~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
|+.+......... .....+........+..+++++.++.|++||+.+...+. .+.+| ...|.+++|+|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~---~~~~~--~~~v~~~~~s~~~~ 347 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT---MLKGH--YKTVDCCVFQSNFQ 347 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE---EECCC--SSCEEEEEEETTTT
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee---eeccC--CCeEEEEEEcCCCC
Confidence 9988765433221 111222223333445667777889999999998876553 44555 46788999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 533 FVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+|++|+.||.|++||+.+++++.....+.. ...+.+.....+.+++.|+.|++|+
T Consensus 348 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 348 ELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEEEEETTSCEEEEEECC----------------------------------------
T ss_pred EEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecC
Confidence 999999999999999999988776554332 2344554555677888899999995
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.98 E-value=2.3e-30 Score=270.58 Aligned_cols=281 Identities=13% Similarity=0.139 Sum_probs=215.7
Q ss_pred CCCCCcccCCcc-eeecccccccccceeecCCCccccCCCCccCCcceeEEe--cCCCCCeeEEEEcCCCCCEEEEEeCC
Q 007757 245 GGEKGEHVEDKS-TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW--SGHTKGVSAIRFFPKYGHLILSAGMD 321 (590)
Q Consensus 245 ~~~~~~~~~~~s-~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l--~gH~~~V~~l~fsp~~g~~L~sgs~D 321 (590)
+......+.+.. .+..++..|...+.|-.... +....+ .+|...|++++|+|+++++|++|+.|
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-------------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-------------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-------------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 344445566665 67788888999999955422 233333 47999999999999548999999999
Q ss_pred CcEEEEEccCCCeeEEEeccC---CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC-CCCceEEEEecCCC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGH---SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDD 397 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h---~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~ 397 (590)
+.|++||+. +..+..+..| ...|.+++|+|++++|++++.|+.|++||+ +++.+..+.. ...+..+.|++++
T Consensus 141 ~~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~- 216 (383)
T 3ei3_B 141 GATTLRDFS--GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRC- 216 (383)
T ss_dssp TEEEEEETT--SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSC-
T ss_pred CEEEEEECC--CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCC-
Confidence 999999993 4566666544 488999999999999999999999999999 4666666654 3455667777654
Q ss_pred CCcEEEEEEcCCcEEEEECCC----CceEEEEcccCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeec---
Q 007757 398 KQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISE--- 469 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t----~~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--- 469 (590)
..+|++|+.|+.|++||+++ +.++..+ .|...|.+++|+| ++.+|++++.|+.|++||+++......+..
T Consensus 217 -~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 217 -DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp -TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB
T ss_pred -CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc
Confidence 24899999999999999998 6666666 6999999999999 999999999999999999987665444431
Q ss_pred ---CCCCccc----------EEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007757 470 ---PHMHSMP----------SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 470 ---~~~~~i~----------~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
.+...+. .++++|++++ +++.|+.|++||+.++..+. .+.++.....+..++|+|++++|++
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~---~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH---QLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE---EECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee---eecCCCCCceEEEEEEecCccEEEE
Confidence 1222333 3444555544 55689999999998876553 3444433566777899999999999
Q ss_pred EeCCCcEEEEeCCC
Q 007757 537 GDGEGKCWFWDWKS 550 (590)
Q Consensus 537 gs~dg~I~iwd~~t 550 (590)
|+ ||.|+|||+.+
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999864
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=8.6e-30 Score=270.43 Aligned_cols=276 Identities=20% Similarity=0.317 Sum_probs=216.8
Q ss_pred cccccceeecCCCccccCCCCccCCcceeEEe--cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc
Q 007757 264 TDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW--SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG 341 (590)
Q Consensus 264 ~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l--~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~ 341 (590)
.|..+|+|-. ...++++.+ .+|...|+||+|+|+ |++|++|+.||+|+|||+ ..+++++.+.+
T Consensus 123 ld~tV~lWd~-------------~tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~-~~~~~~~~~~~ 187 (420)
T 4gga_A 123 LDNSVYLWSA-------------SSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNMTS 187 (420)
T ss_dssp ETTEEEEEET-------------TTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEECC
T ss_pred eCCEEEEEEC-------------CCCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEc-CCCcEEEEEeC
Confidence 4777888843 233445544 578889999999999 999999999999999999 68899999999
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE-EEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~-~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~ 419 (590)
|...|.+++|+ +.+|++|+.|+.+++||...... +..+..+ .....+.+.+. +.++++++.|+.|++|++.++
T Consensus 188 h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~---g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 188 HSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD---GRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEESSCC
T ss_pred CCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC---CCeeeeeeccccceEEeeccc
Confidence 99999998885 67999999999999999987543 4444433 33344555554 368999999999999999876
Q ss_pred c----eEEEEcccCCceeEEEEeCCCC-EEEE--EeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-
Q 007757 420 E----ITQEYDQHLGAVNTITFVDSNR-RFVT--SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS- 491 (590)
Q Consensus 420 ~----~~~~~~~h~~~V~~i~~~p~~~-~l~s--~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s- 491 (590)
+ .+.....|...|.+++|+|.+. .+++ |+.|++|++||+.++.....+. ....+.++.|+|++..+++++
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEEC
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEe
Confidence 4 4567788999999999999765 4444 4579999999999998888774 456789999999999998876
Q ss_pred -cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEE
Q 007757 492 -LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG 566 (590)
Q Consensus 492 -~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~ 566 (590)
.|+.|+|||+.+...+ ..+.+| ...|.+++|+|+|++|++|+.||+|+|||+....+......+...+..
T Consensus 341 ~~d~~I~iwd~~~~~~v---~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKV---AELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp TTTCCEEEEETTTCCEE---EEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred cCCCEEEEEECCCCcEE---EEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence 6899999999887655 456677 577999999999999999999999999999887776666655544433
No 95
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.1e-29 Score=263.72 Aligned_cols=281 Identities=11% Similarity=0.149 Sum_probs=206.8
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEE-EEEeCCC
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDK 365 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l-~s~s~Dg 365 (590)
...+.++++.+|...|++++|+|+ +.+|++|+.++ ++||++ .....+.... ...+..+++.++++.+ ++++.|+
T Consensus 7 ~~~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 7 ITRNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNV-HPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKE 81 (355)
T ss_dssp ------------CCCCCEEEECTT-SSEEEEECSSE-EEEEEE-TTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTT
T ss_pred cccCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEec-CCcceeeeee--cCCeEEEEEcCCCCEEEEEECCcc
Confidence 344566778899999999999999 89999988775 789998 4555544433 2358889999988877 5677789
Q ss_pred eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-ceEEEEcccCCceeEEEEeCCCCEE
Q 007757 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
.|+|||+.+++++..+.....+..+.+.+. .++++ .++.|++||+.++ +.+..+.. +...+++++ .++
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIKVDAPVKDLFLSRE-----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSS-----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred EEEEEECCCCcEEEEEECCCceEEEEEcCC-----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 999999999999998887666666666542 34443 5889999999988 66555543 445566666 566
Q ss_pred EE--EeCCCcEEEEECCCCc---------------E-EEEeecCCCCcccEEEEcCCCCEEEEEEcCCe-EEEEEccCce
Q 007757 445 VT--SSDDKSLRVWEFGIPV---------------V-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERF 505 (590)
Q Consensus 445 ~s--~s~Dg~I~iwdl~~~~---------------~-~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~-I~iwd~~~~~ 505 (590)
++ |+.+|.|++||+.... + +..+ ..|...|.+++|+|++.+|++++.|+. |++||++++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 66 5889999999998754 1 3333 469999999999999999999999998 9999999876
Q ss_pred eeccccccc-C-cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EE------------------Ee---cC
Q 007757 506 QLNKKKRFA-G-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF--RT------------------LK---CH 560 (590)
Q Consensus 506 ~~~~~~~~~-~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~--~~------------------l~---~h 560 (590)
.+.. +. + | ...|.+++|+|+|++|++|+.|+.|+|||+...... .. +. .+
T Consensus 230 ~~~~---~~~g~h--~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T 3vu4_A 230 LVRE---FRRGLD--RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK 304 (355)
T ss_dssp EEEE---EECTTC--CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred EEEE---EEcCCC--CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence 6533 33 3 4 467899999999999999999999999999764311 11 11 11
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 561 EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 561 ~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
......++|++ ++.+|++++.||.+++|+
T Consensus 305 ~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 305 HVRGCKIAWIS-ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp TCCCCEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence 22336689999 677999999999999985
No 96
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-29 Score=253.08 Aligned_cols=282 Identities=17% Similarity=0.237 Sum_probs=228.0
Q ss_pred CCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 007757 245 GGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 324 (590)
Q Consensus 245 ~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I 324 (590)
+......+ ....+..+...|...+.|-. ...++...+.+|...|.+++|+|+ +.+|++|+.||.|
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~-------------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 83 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSK-------------DDQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTMI 83 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEE-------------SSSEEEEEEEECSSCEEEEEEETT-TTEEEEEETTSCE
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEEC-------------CCCEEEEEeecCCccEEEEEECCC-CCEEEEecCCCeE
Confidence 33444445 44445677788888998854 234567888899999999999999 9999999999999
Q ss_pred EEEEccCC--CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-CCceEEEEecCCCCCcE
Q 007757 325 KIWDVVNS--GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 325 ~iWd~~~~--~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 401 (590)
++|++... .+.+..+.+|...|.+++| ++++|++++.||.|++|| .+..+..+..+ .....+.+.+.. +.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~--~~~ 157 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS--ENK 157 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETT--TTE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCC--CCE
Confidence 99998533 3667888999999999999 577999999999999999 56666666543 444566666632 368
Q ss_pred EEEEEcCCcEEEEECCCCceEEEEcc-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEE
Q 007757 402 LLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 402 lvsg~~dg~I~vwDl~t~~~~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~ 480 (590)
+++++.|+.|++|| .......+.. |...|.+++|+|++. |++++.||.|++||+++...+..+. .|...|.+++|
T Consensus 158 l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~ 233 (313)
T 3odt_A 158 FLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKL 233 (313)
T ss_dssp EEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEE
T ss_pred EEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEE
Confidence 99999999999999 4566777776 899999999999987 9999999999999999998887775 58889999999
Q ss_pred cCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 007757 481 HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 481 sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
+|++ .|++++.||.|++||+.+..... .+..+ ...+.+++|+|+++ +++++.||.|++||+.+++.+....
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~---~~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSKENGSLKQ---VITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECTTTCCEEE---EEECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred ecCC-CEEEEecCCEEEEEECCCCceeE---EEecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 9999 68899999999999998876553 33444 45688999999998 5578999999999999887765443
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-30 Score=265.35 Aligned_cols=270 Identities=8% Similarity=0.034 Sum_probs=207.3
Q ss_pred EcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC---------CCcE
Q 007757 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE---------TGQV 377 (590)
Q Consensus 307 fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~---------t~~~ 377 (590)
++++ +.+|++|+.||+|+|||+ ..++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.
T Consensus 44 ~~~d-~~~l~sg~~Dg~v~iwd~-~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYD-KWVCMCRCEDGALHFTQL-KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEE-EEEEEEEEETTEEEEEEE-SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCC-CCEEEEECCCCcEEEEEC-CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455 789999999999999999 5777777776 567889999988 9999999999999665 5665
Q ss_pred EEEccCCCC--ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc-ccCCceeEEEEeCCCCEEEEEeCCCcEE
Q 007757 378 IRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 378 ~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
+..+...+. +.++.+++.. .+.++++|+.||.|++||+++++.+..+. .|...|++++|+|++.+|++|+.||.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEV-NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCC-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 666655544 4455555511 23689999999999999999999877664 4556899999999999999999999999
Q ss_pred EEECCCCcEE-EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCE
Q 007757 455 VWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 455 iwdl~~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
+||++++..+ ..+...|...|.+++|+|++.+|++++ ++.|++||++.......+..+..+.......+++|+|+|++
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 9999998877 555444889999999999999999999 55999999998765544444333322211146999999999
Q ss_pred EEEEeC-CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCC--CCCEEEEEeCCCcEEEe
Q 007757 534 VMSGDG-EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL--EQSKVATCGWDGLIKYW 589 (590)
Q Consensus 534 l~sgs~-dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~--~~~~l~s~g~DG~I~iW 589 (590)
|++++. ++.|+||++......... .++..+.|.++ +...|++++.||.+.++
T Consensus 275 l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 999998 999999999765443332 45667777762 34467888888888775
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=6.5e-30 Score=269.38 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=224.7
Q ss_pred eeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC---
Q 007757 257 TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG--- 333 (590)
Q Consensus 257 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~--- 333 (590)
.+..+...|...+.|-...... ....+..+.+|.+.|++++|+|.++++|++|+.||.|+||++. .+
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~---------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~-~~~~~ 117 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGR---------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP-DGGLV 117 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEE---------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC-TTCCS
T ss_pred EEEEEEcCCCEEEEEECccCCC---------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc-CCCCc
Confidence 3445567788888885533211 0123456789999999999999339999999999999999994 44
Q ss_pred ----eeEEEeccCCCceeEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEcc---CCCCceEEEEecCCCCCcEEEEE
Q 007757 334 ----KCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAG 405 (590)
Q Consensus 334 ----~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg 405 (590)
.++..+.+|...|.+++|+|++ ++|++++.||.|++||+.+++.+..+. ....+.++.|++++ .+|+++
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~ 194 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG---ALICTS 194 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS---SCEEEE
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC---CEEEEE
Confidence 6788899999999999999998 699999999999999999999998883 33445677777644 679999
Q ss_pred EcCCcEEEEECCCCceEEEE-cccCCc-eeEEEEeCCCCEEEEE---eCCCcEEEEECCCCcE-EEEeecCCCCcccEEE
Q 007757 406 MSDKKIVQWDMNTKEITQEY-DQHLGA-VNTITFVDSNRRFVTS---SDDKSLRVWEFGIPVV-IKYISEPHMHSMPSIS 479 (590)
Q Consensus 406 ~~dg~I~vwDl~t~~~~~~~-~~h~~~-V~~i~~~p~~~~l~s~---s~Dg~I~iwdl~~~~~-~~~~~~~~~~~i~~i~ 479 (590)
+.|+.|++||+++++.+..+ ..|.+. +.++.|+|++.+|+++ +.|+.|++||++.... +......+...+.+++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 99999999999999999988 788876 8999999999999999 7999999999987553 3333345777899999
Q ss_pred EcCCCCEEEEEE-cCCeEEEEEccCcee-ecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 007757 480 LHPNTNWLAAQS-LDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 553 (590)
Q Consensus 480 ~sp~g~~l~s~s-~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~ 553 (590)
|+|++.+|++++ .|+.|++|++.+... +..+..+. ....+.+++|+|++.++++ .++.+++|++.++.+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 999999997555 799999999987653 32222222 3467888999999998875 466999999988765
No 99
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-30 Score=293.93 Aligned_cols=257 Identities=21% Similarity=0.349 Sum_probs=208.5
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccC-CCeeEEEeccCCCceeEEEEecC--CCEEEEEeCCCeEE
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIK 368 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~I~ 368 (590)
+.++.||.+.|++++|+|+ +++|++|+.||.|+||++.. ....+..+.+|...|++++|+++ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4678899999999999999 89999999999999999942 45778889999999999999987 99999999999999
Q ss_pred EEECCCCc--EEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC--ceEEEEcccCCceeEEEEeC----
Q 007757 369 YWDTETGQ--VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVD---- 439 (590)
Q Consensus 369 vWd~~t~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~--~~~~~~~~h~~~V~~i~~~p---- 439 (590)
+||+.+++ .+..+. ....+.++.++++. .+.++++|+.||.|++||++++ .....+..|...|.++.|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCC-CCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 99999986 444443 34456677777652 1378999999999999999987 34556778999999999999
Q ss_pred ---------CCCEEEEEeCCCcEEEEECCCCc---EEEEeecCCCCcccEEEEcCC---CCEEEEEEcCCeEEEEEccCc
Q 007757 440 ---------SNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPN---TNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 440 ---------~~~~l~s~s~Dg~I~iwdl~~~~---~~~~~~~~~~~~i~~i~~sp~---g~~l~s~s~dg~I~iwd~~~~ 504 (590)
++..|++|+.||.|++||++... ........|...|.+++|+|+ +.+|++++.||.|++||+.+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 58999999999999999998763 222233468899999999999 899999999999999999875
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
.................+.+++|+|+|++|++|+.||.|++|++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 4322222222222356788899999999999999999999999874
No 100
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.8e-31 Score=274.09 Aligned_cols=244 Identities=19% Similarity=0.201 Sum_probs=195.5
Q ss_pred eccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC--cEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEE
Q 007757 339 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 339 ~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~--~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwD 415 (590)
+..|...|++++|+|++++|++|+.|+.|+|||+.++ +.+..+..+ ..+.++.|++++ .+|++|+.|+.|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---NRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---CCEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---CEEEEEeCCCeEEEEE
Confidence 4456789999999999999999999999999999988 566666543 345677777654 6799999999999999
Q ss_pred CCCCc---eEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE---EEEeecCCCCcccEEEEcCCCCEEEE
Q 007757 416 MNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 416 l~t~~---~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~s 489 (590)
+.++. ....+..|...|.+++|+|++++|++++.|+.|++||++.... ...+..+|...|.+++|+|++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 99887 6777788999999999999999999999999999999988763 55555458999999999999999999
Q ss_pred EEcCCeEEEEEccCce---------------eecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-
Q 007757 490 QSLDNQILIYSTRERF---------------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV- 553 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~---------------~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~- 553 (590)
++.|+.|++||+.... .......+ +| ...+.+++|+|+|++|++|+.||.|++||+.+++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS--GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC--SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC--CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 9999999999985321 01112223 44 56789999999999999999999999999999887
Q ss_pred ---EEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 554 ---FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 554 ---~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+..+..|...|.+++|+| ++.+|++|+.|+.+ +|+
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EEC
T ss_pred ceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEE
Confidence 888999999999999999 67788888866666 553
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.4e-29 Score=268.02 Aligned_cols=247 Identities=19% Similarity=0.330 Sum_probs=204.4
Q ss_pred EEeccCCCceeEEEEecC-CCEEEEEeCCCeEEEEECCC----------CcEEEEccC-CCCceEEEEecCCCCCcEEEE
Q 007757 337 RTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTET----------GQVIRTFST-GKIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvs 404 (590)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ ...+..+.. ...+.++.|++.+. .+|++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN--GYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST--TEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC--CeEEE
Confidence 456689999999999997 78999999999999999986 455555543 34456777777543 48999
Q ss_pred EEcCCcEEEEECCCCce-------EEEEcccCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCC---cEEEEeecCCCC
Q 007757 405 GMSDKKIVQWDMNTKEI-------TQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIP---VVIKYISEPHMH 473 (590)
Q Consensus 405 g~~dg~I~vwDl~t~~~-------~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~---~~~~~~~~~~~~ 473 (590)
|+.||.|++||+.++.. ...+..|...|.+++|+| ++..|++++.|+.|++||++.. ..+..+. .|..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~ 278 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTA 278 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCC
Confidence 99999999999987422 456778999999999999 6789999999999999999876 3444443 6888
Q ss_pred cccEEEEcCCCC-EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCC-
Q 007757 474 SMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKS- 550 (590)
Q Consensus 474 ~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t- 550 (590)
.|.+++|+|++. +|++++.||.|++||++.... ....+.+| ...+.+++|+|+++ +|++++.||.|+|||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--CeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 999999999987 688999999999999987432 23444555 56789999999985 699999999999999987
Q ss_pred -------------CeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 551 -------------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 -------------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
..++..+.+|...|.+++|+|++..+|++++.||.|+||+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 3677788889999999999995555999999999999996
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4.5e-30 Score=274.02 Aligned_cols=285 Identities=13% Similarity=0.117 Sum_probs=209.4
Q ss_pred CcccCCc-ceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 007757 249 GEHVEDK-STFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW 327 (590)
Q Consensus 249 ~~~~~~~-s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iW 327 (590)
...+++. ..+++++..|..+++|-.... ....+..+.+|.+.|++|+|+|.++++|+||+.||+|+||
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~-----------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIK-----------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCC-----------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCC-----------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 3445543 346678889999999944322 1234456779999999999999668999999999999999
Q ss_pred EccCCCeeEEEecc--CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEE
Q 007757 328 DVVNSGKCMRTYMG--HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 328 d~~~~~~~~~~~~~--h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvs 404 (590)
|+ ........... +...+.+++|+|++.+|++|+.||.|++||++.. .+..+.. ...+.++.|+|.. ..+|++
T Consensus 193 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~--~~~~~s 268 (435)
T 4e54_B 193 DF-KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCC--DWFLAT 268 (435)
T ss_dssp ET-TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTC--SSEEEE
T ss_pred ec-cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCC--ceEEEE
Confidence 99 34333322322 3446889999999999999999999999999754 4444443 3445566676654 478999
Q ss_pred EEcCCcEEEEECCCCceEEE---EcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCC------Ccc
Q 007757 405 GMSDKKIVQWDMNTKEITQE---YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM------HSM 475 (590)
Q Consensus 405 g~~dg~I~vwDl~t~~~~~~---~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~------~~i 475 (590)
|+.|+.|++||+++.+.... ..+|...|++++|+|++.+|++++.||.|+|||+........+.. |. ..+
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~ 347 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP-HPHRHFQHLTP 347 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC-CCCCCCSSSCC
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec-cccccccccee
Confidence 99999999999998754333 357899999999999999999999999999999998776665532 21 123
Q ss_pred cEEEEcCCCCEEEEEEc------------CCeEEEEEccCceeecccccccCcccccceEEE-EEcCCCCEEEEEeCCCc
Q 007757 476 PSISLHPNTNWLAAQSL------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVMSGDGEGK 542 (590)
Q Consensus 476 ~~i~~sp~g~~l~s~s~------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v-~~spdg~~l~sgs~dg~ 542 (590)
..+.|+|++.++++++. ++.|++||..++..+... +.+| ...|.++ +|+|+|++|++|+ |+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l--~~~~--~~~v~s~~~fspdg~~lasg~-d~~ 422 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL--YDPE--SSGISSLNEFNPMGDTLASAM-GYH 422 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE--CCSS--CCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE--eCCC--CCcEEEEEEECCCCCEEEEEc-CCc
Confidence 45678888887777653 357999999887655332 2233 2344455 7999999999886 789
Q ss_pred EEEEeCCCCeEE
Q 007757 543 CWFWDWKSCKVF 554 (590)
Q Consensus 543 I~iwd~~t~~~~ 554 (590)
|+||++++++..
T Consensus 423 i~iW~~~~gk~r 434 (435)
T 4e54_B 423 ILIWSQQEARTR 434 (435)
T ss_dssp EEECCCC-----
T ss_pred EEEEECCcCeee
Confidence 999999988753
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-31 Score=280.75 Aligned_cols=266 Identities=12% Similarity=0.156 Sum_probs=214.0
Q ss_pred EcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEe-ccCCCceeEEEEec-CCCEEEEEeCCCeEEEEECCC---Cc---EE
Q 007757 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY-MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET---GQ---VI 378 (590)
Q Consensus 307 fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~h~~~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t---~~---~~ 378 (590)
|+|+ +..+++++ .|+. .++++..+ .+|...|++++|+| ++++|++|+.||.|+|||+.+ +. ..
T Consensus 35 f~~~-~~~~~~~~------~w~~--~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 35 FGPI-QEIVRSPN------MGNL--RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GCCC-CCCCCCCC------GGGC--CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred cCCc-cccccccc------cccc--cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee
Confidence 5666 66666554 4875 67888888 89999999999999 999999999999999999876 33 33
Q ss_pred EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC---CCceEEEEcc------------cCCceeEEE--EeCCC
Q 007757 379 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYDQ------------HLGAVNTIT--FVDSN 441 (590)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~---t~~~~~~~~~------------h~~~V~~i~--~~p~~ 441 (590)
..+.....+.++.|.+++ .+|++|+.||.|++||+. +++....+.. +...+.++. +++++
T Consensus 106 ~~~~h~~~v~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 106 LTYDCSSTVTQITMIPNF---DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp EEEECSSCEEEEEECTTS---SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred eeccCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 444455667777887643 689999999999999995 5555443332 445666666 55789
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecC-CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
.+|++++.|+.|++||+++...+..+... |...|.+++|+|++.+|++++.||.|++||++....+..... .+ ..
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~--~~ 258 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GD--HA 258 (437)
T ss_dssp EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TT--CE
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CC--CC
Confidence 99999999999999999999988888654 788999999999999999999999999999998655533221 23 34
Q ss_pred ceEEEEEc----CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC--------------------------CCEEEEEEc
Q 007757 521 YACQVNFS----PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE--------------------------GVCIGCEWH 570 (590)
Q Consensus 521 ~v~~v~~s----pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~--------------------------~~V~~v~~s 570 (590)
.|.+++|+ |++.+|++|+.||.|++||+.+++++..+.+|. ..|.+++|+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 68888554 578899999999999999999999998887553 457788888
Q ss_pred CCCCCEEEEEeCCCcEEEeC
Q 007757 571 PLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 571 p~~~~~l~s~g~DG~I~iWD 590 (590)
+ +.+|++|+.||.|++||
T Consensus 339 ~--~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 339 N--DKILLTDEATSSIVMFS 356 (437)
T ss_dssp T--TEEEEEEGGGTEEEEEE
T ss_pred C--ceEEEecCCCCeEEEEE
Confidence 3 47999999999999997
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.3e-29 Score=270.00 Aligned_cols=255 Identities=17% Similarity=0.288 Sum_probs=209.2
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC---------CeeEEEeccCCCceeEEEEecCCC-EEEEE
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---------GKCMRTYMGHSKAVRDISFCNDGT-KFLTA 361 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~---------~~~~~~~~~h~~~V~~l~fspdg~-~l~s~ 361 (590)
+....+|.+.|++++|+|+++.+|++|+.||.|+||++... ...+..+.+|...|.+++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 34566899999999999976789999999999999999431 577888999999999999999988 99999
Q ss_pred eCCCeEEEEECCCCcE-------EEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC---ceEEEEcccCC
Q 007757 362 SYDKNIKYWDTETGQV-------IRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLG 430 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~---~~~~~~~~h~~ 430 (590)
+.||.|++||+.++.. ...+. ....+..+.|++. ...+|++++.|+.|++||++++ ..+..+..|..
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~--~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL--HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS--CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC--CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 9999999999987421 22232 2334556666664 3479999999999999999987 57778889999
Q ss_pred ceeEEEEeCCCC-EEEEEeCCCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEccCceee
Q 007757 431 AVNTITFVDSNR-RFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 431 ~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~ 507 (590)
.|++++|+|++. .|++++.||.|++||++.. ..+..+. .|...|.+++|+|++. +|++++.|+.|++||+......
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 999999999887 6889999999999999874 4444443 5888999999999985 7999999999999999762211
Q ss_pred -----------cccccccCcccccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC
Q 007757 508 -----------NKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 508 -----------~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~t~ 551 (590)
.....+.+| ...+.+++|+|++. +|++++.||.|+||++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 222334445 56789999999999 8999999999999998653
No 105
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.3e-28 Score=255.68 Aligned_cols=265 Identities=17% Similarity=0.196 Sum_probs=220.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEE-EEEeCCCeEEEEECCCCcEEEEccCCCCceEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 390 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l-~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~ 390 (590)
+.++++++.|+.|++||+ ..++++..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+..+..+
T Consensus 2 ~~l~vs~~~d~~v~v~d~-~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDV-TSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEET-TTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred CEEEEEcCCCCEEEEEEC-CCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce
Confidence 357889999999999999 6788888888775 48999999999977 66778999999999999999999888878888
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeec
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~ 469 (590)
.+++++. .+++++..++.|++||+.+++.+..+..+ ..+.+++|+|+++.| ++++.++.|++||+.++..+..+..
T Consensus 80 ~~spdg~--~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 80 AVSPDGK--QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp EECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EECCCCC--EEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 8887553 45566667899999999999988887654 568999999999977 6888899999999999888777653
Q ss_pred CCCCcccEEEEcCCCCEE-EEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe---CCCcEEE
Q 007757 470 PHMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWF 545 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs---~dg~I~i 545 (590)
...+.+++|+|++++| ++++.++.|++||+++........ . ...+.+++|+|+|++|++++ .++.|++
T Consensus 157 --~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 157 --GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---V---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp --CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---C---SSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred --CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---c---CCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 3457899999999987 566778999999998875543322 1 24567899999999999888 6899999
Q ss_pred EeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 546 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 546 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
||+.+++++..+..|.. +.+++|+|++..++++++.|+.|++||
T Consensus 229 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 229 IDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 99999999999987664 789999995444447888999999997
No 106
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-28 Score=261.53 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=232.2
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEE-----EeccCCCceeEEEEecCCCEEEEEeCC
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-----TYMGHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-----~~~~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
+.+..+..+. .+.+++|+|+ +.++++++.++.|++||+ ..++.+. .+.+|...|.+++|+++++++++++.|
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~-~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDN-TRLAIPLLEDEGMDVLDI-NSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSS-SEEEEEBTTSSSEEEEET-TTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred eEEEEEcCCC-CceEEEEeCC-CeEEEEeCCCCeEEEEEC-CCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 3455665554 4669999995 889999999999999999 5677766 345789999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCE
Q 007757 365 KNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
+.|++||+.+++.+..+.. ...+..+.+.+++. .++++++.++.|++||+++++.+..+.. ...+.+++|+|++++
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD--LVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKE 267 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT--EEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSE
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC--EEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCE
Confidence 9999999999999888764 44566778877543 4556666899999999999988887765 456999999999999
Q ss_pred EEEEe--------CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEE-EEEEcCCeEEEEEccCceeeccccccc
Q 007757 444 FVTSS--------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 444 l~s~s--------~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~ 514 (590)
|++++ .|+.|++||+.+...+..+. +...+.+++|+|+++++ ++++.++.|++||+.+........
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--- 342 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--- 342 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---
Confidence 99888 58899999999887776653 44578899999999755 556889999999998765543322
Q ss_pred CcccccceEEEEEcCCCCEEEEEeC---------------CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007757 515 GHIVAGYACQVNFSPDGRFVMSGDG---------------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~---------------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
+ ...+..++|+|+|++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+| ++.+|++
T Consensus 343 -~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~ 417 (433)
T 3bws_A 343 -V--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSP-DNRYLVI 417 (433)
T ss_dssp -C--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSCEEEE
T ss_pred -C--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcC-CCCEEEE
Confidence 1 345778999999999988876 579999999999999988864 5689999999 5667777
Q ss_pred Ee-CCCcEEEeC
Q 007757 580 CG-WDGLIKYWD 590 (590)
Q Consensus 580 ~g-~DG~I~iWD 590 (590)
++ .|+.|++||
T Consensus 418 ~~~~d~~i~v~~ 429 (433)
T 3bws_A 418 SDFLDHQIRVYR 429 (433)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCeEEEEE
Confidence 66 599999996
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.9e-30 Score=272.99 Aligned_cols=246 Identities=20% Similarity=0.359 Sum_probs=197.9
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc-----------EEEEccCC-------------CCceEEEEecCC
Q 007757 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----------VIRTFSTG-------------KIPYVVKLNPDD 396 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-----------~~~~~~~~-------------~~~~~~~~~~~~ 396 (590)
.|...|++++|+|+|++|++|+.||.|+|||+.+++ ++..+..+ ..+..+.|.+..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999999877 45566544 446778888764
Q ss_pred CCCcEEEEEEcCCcEEEEECCCCceE---------------------------------------EE-EcccCCceeEEE
Q 007757 397 DKQNILLAGMSDKKIVQWDMNTKEIT---------------------------------------QE-YDQHLGAVNTIT 436 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~vwDl~t~~~~---------------------------------------~~-~~~h~~~V~~i~ 436 (590)
. ...|++++.|+.|++||+.++... .. ..+|...|.+++
T Consensus 106 ~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 N-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp S-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred C-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 2 257999999999999999764432 12 357999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC-cEEEEe------ecCCCCcccEEEEcCCC-CEEEEEEcCCeEEEEEccCceee-
Q 007757 437 FVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYI------SEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQL- 507 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~------~~~~~~~i~~i~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~- 507 (590)
|+|++++|+++ .|+.|++||++.. ..+..+ ...|...|.+++|+|++ .+|++++.||.|++||+++....
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 7999999999843 333322 23578889999999998 99999999999999999876531
Q ss_pred cccccccCccc----------ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEecCCCC-------------
Q 007757 508 NKKKRFAGHIV----------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGV------------- 563 (590)
Q Consensus 508 ~~~~~~~~~~~----------~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t-~~~~~~l~~h~~~------------- 563 (590)
.....+.++.. ...+.+++|+|+|++|++++. |.|+|||+.+ ++++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 11234444421 137899999999999999999 9999999997 8899999988642
Q ss_pred --EEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 564 --CIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 564 --V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+..++|+| ++.+|++|+.||.|+|||
T Consensus 343 ~~~~~~~~s~-~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 343 FDKFECCWNG-SDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp GCCCCEEECT-TSSEEEEECSTTEEEEEE
T ss_pred ccceEEEECC-CCCEEEEeccCCEEEEEE
Confidence 33499999 678999999999999997
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=4.5e-29 Score=266.03 Aligned_cols=282 Identities=18% Similarity=0.363 Sum_probs=214.4
Q ss_pred eecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEE
Q 007757 258 FHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR 337 (590)
Q Consensus 258 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~ 337 (590)
+..++..|...+.|-. ...+++.++.+|.+.|++++| + +++|++|+.||.|++||+ .+++++.
T Consensus 145 ~l~~g~~dg~i~iwd~-------------~~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~-~~~~~~~ 207 (435)
T 1p22_A 145 KIVSGLRDNTIKIWDK-------------NTLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDV-NTGEMLN 207 (435)
T ss_dssp EEEEEESSSCEEEEES-------------SSCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEES-SSCCEEE
T ss_pred EEEEEeCCCeEEEEeC-------------CCCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEEC-CCCcEEE
Confidence 4456667777777732 345678899999999999999 4 789999999999999999 6888999
Q ss_pred EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE--EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEE
Q 007757 338 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwD 415 (590)
.+.+|...|.+++|+ +.+|++|+.||.|++||+.++..+. ....++...+.++.++ +.++++|+.||.|++||
T Consensus 208 ~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWN 282 (435)
T ss_dssp EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEE
Confidence 999999999999997 4599999999999999999886542 2223333344444442 36899999999999999
Q ss_pred CCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe
Q 007757 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 495 (590)
Q Consensus 416 l~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~ 495 (590)
+++++.+..+..|...|.++.|. +.+|++|+.||.|++||++++..+..+. .|...|.++++ ++.+|++++.||.
T Consensus 283 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~ 357 (435)
T 1p22_A 283 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGK 357 (435)
T ss_dssp TTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred CCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCc
Confidence 99999999999999999999995 6799999999999999999998887775 58888999988 7889999999999
Q ss_pred EEEEEccCceeec------ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEE
Q 007757 496 ILIYSTRERFQLN------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 496 I~iwd~~~~~~~~------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
|++||+....... ....+.+| .+.|.+++| ++.+|++|+.||.|++||+.+........ ...+..++.|
T Consensus 358 i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 432 (435)
T 1p22_A 358 IKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTY 432 (435)
T ss_dssp EEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCSSSEEEEEC----------------------
T ss_pred EEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceee
Confidence 9999987654110 22344555 456778888 78899999999999999998876654433 2234455555
Q ss_pred cC
Q 007757 570 HP 571 (590)
Q Consensus 570 sp 571 (590)
.+
T Consensus 433 ~~ 434 (435)
T 1p22_A 433 IS 434 (435)
T ss_dssp --
T ss_pred ec
Confidence 43
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.1e-29 Score=258.01 Aligned_cols=241 Identities=12% Similarity=0.153 Sum_probs=203.7
Q ss_pred EEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc----EEEEccCCCCceEEEEecCCCCCc-EEEEEEcCCcE
Q 007757 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQN-ILLAGMSDKKI 411 (590)
Q Consensus 337 ~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~----~~~~~~~~~~~~~~~~~~~~~~~~-~lvsg~~dg~I 411 (590)
....+|...|++++|+|++++|++++.|+.|+||++.++. ..........+.+++|.++ +. +|++|+.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeE
Confidence 3446899999999999999999999999999999999887 5555555666778888875 37 89999999999
Q ss_pred EEEEC-CCCceEEEEcc--cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC---------CcEEEEeecCCCCcccEEE
Q 007757 412 VQWDM-NTKEITQEYDQ--HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---------PVVIKYISEPHMHSMPSIS 479 (590)
Q Consensus 412 ~vwDl-~t~~~~~~~~~--h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~---------~~~~~~~~~~~~~~i~~i~ 479 (590)
++||+ .+++. ..+.. |...|.+++|+| +.+|++++.|+.|++||++. ...+..+ .+...+.+++
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~ 157 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTMD 157 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEEE
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE--eeCCceEEEE
Confidence 99999 87755 67778 999999999999 99999999999999999876 4444433 3778899999
Q ss_pred EcCCCCEEEEEEcCCeEEEEEccC-ceeecccccccCcccccceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC------
Q 007757 480 LHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSC------ 551 (590)
Q Consensus 480 ~sp~g~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~t~------ 551 (590)
|+|++ |++++.++.|++||++. ...... .....+ ...+.+++|+| ++++|++|+.+|.|++|++...
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGT-IEESGL--KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCE-EEECSC--SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccce-eeecCC--CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 99887 99999999999999987 432211 112222 45688999999 9999999999999999999887
Q ss_pred eEEEEEecCCC---------CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 552 KVFRTLKCHEG---------VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ~~~~~l~~h~~---------~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+....+..|.. .|.+++|+| ++.+|++++.||.|++||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEE
T ss_pred ccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEc
Confidence 78888988865 999999999 677999999999999997
No 110
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=5.2e-28 Score=244.73 Aligned_cols=262 Identities=20% Similarity=0.326 Sum_probs=211.8
Q ss_pred cccccceeecCCCccccCCCCccCCcceeEEe--cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc
Q 007757 264 TDYQGRSWIAPPKDAKAANDHCYIPKRLVHTW--SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG 341 (590)
Q Consensus 264 ~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l--~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~ 341 (590)
.|..+|+|-. ...++++++ .+|...|++|+|+|+ +++|++|+.||+|+||++ ..++++..+.+
T Consensus 43 ~D~tV~iWd~-------------~tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~-~~~~~~~~~~~ 107 (318)
T 4ggc_A 43 LDNSVYLWSA-------------SSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNMTS 107 (318)
T ss_dssp ETTEEEEEET-------------TTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEEEEEEC
T ss_pred eCCEEEEEEC-------------CCCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeec-CCceeEEEecC
Confidence 4778888833 334555555 478889999999999 999999999999999999 68899999999
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE-EEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI-RTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~-~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~ 419 (590)
|...+.++.+ ++..|++++.++.+++|+..+.... ..+..+ .....+.+.+. +.++++++.|+.|++||++++
T Consensus 108 h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 108 HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD---GRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEESSCB
T ss_pred ccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC---CCEEEEEecCcceeEEECCCC
Confidence 9998877665 5679999999999999999877544 333332 33344445443 368999999999999999987
Q ss_pred c----eEEEEcccCCceeEEEEeCCCCEE---EEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-
Q 007757 420 E----ITQEYDQHLGAVNTITFVDSNRRF---VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS- 491 (590)
Q Consensus 420 ~----~~~~~~~h~~~V~~i~~~p~~~~l---~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s- 491 (590)
+ .......|.+.|.++.+++.+..+ ++++.++.|++||.......... .+...+..+.++|.+..+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEEC
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeeeeeecccccceEEEEE
Confidence 5 345566788999999999876643 45678899999999888777665 3667899999999999888765
Q ss_pred -cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 007757 492 -LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 492 -~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~ 552 (590)
.|+.|++||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||+|+|||+....
T Consensus 261 ~~d~~i~iwd~~~~~~~---~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKV---AELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTTCCEEEEETTTCCEE---EEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred cCCCEEEEEECCCCcEE---EEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 7899999999887655 456677 5779999999999999999999999999987643
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1e-27 Score=250.78 Aligned_cols=277 Identities=15% Similarity=0.159 Sum_probs=225.0
Q ss_pred ecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEEccCCCeeEE
Q 007757 259 HGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVVNSGKCMR 337 (590)
Q Consensus 259 ~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L-~sgs~Dg~I~iWd~~~~~~~~~ 337 (590)
......|...+.|-. ...++++.+.+|.. +.+++|+|+ +.+| ++++.|+.|++||+ ..++++.
T Consensus 5 ~vs~~~d~~v~v~d~-------------~~~~~~~~~~~~~~-~~~~~~s~d-g~~l~~~~~~d~~i~v~d~-~~~~~~~ 68 (391)
T 1l0q_A 5 YIANSESDNISVIDV-------------TSNKVTATIPVGSN-PMGAVISPD-GTKVYVANAHSNDVSIIDT-ATNNVIA 68 (391)
T ss_dssp EEEETTTTEEEEEET-------------TTTEEEEEEECSSS-EEEEEECTT-SSEEEEEEGGGTEEEEEET-TTTEEEE
T ss_pred EEEcCCCCEEEEEEC-------------CCCeEEEEeecCCC-cceEEECCC-CCEEEEECCCCCeEEEEEC-CCCeEEE
Confidence 344556677777733 23466778887765 899999999 6655 77889999999999 6788888
Q ss_pred EeccCCCceeEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC
Q 007757 338 TYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl 416 (590)
.+..+. .|.+++|+|++++|+.++ .++.|++||+.+++.+..+..+..+..+.+++++. .++++++.++.|++||+
T Consensus 69 ~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~ 145 (391)
T 1l0q_A 69 TVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGK--KLYVTNNGDKTVSVINT 145 (391)
T ss_dssp EEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS--EEEEEETTTTEEEEEET
T ss_pred EEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCC--EEEEEeCCCCEEEEEEC
Confidence 887665 899999999999886554 67999999999999999888877777888877542 45578888999999999
Q ss_pred CCCceEEEEcccCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE---c
Q 007757 417 NTKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---L 492 (590)
Q Consensus 417 ~t~~~~~~~~~h~~~V~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s---~ 492 (590)
.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+++......+. +...+.+++|+|++++|++++ .
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~ 222 (391)
T 1l0q_A 146 VTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKY 222 (391)
T ss_dssp TTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSS
T ss_pred CCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcC
Confidence 999988888765 456999999999887 677889999999999988777664 456789999999999999988 6
Q ss_pred CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecCCCC
Q 007757 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV-MSGDGEGKCWFWDWKSCKVFRTLKCHEGV 563 (590)
Q Consensus 493 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l-~sgs~dg~I~iwd~~t~~~~~~l~~h~~~ 563 (590)
++.|++||+.+...+.. +..+ ..+.+++|+|+|++| ++++.++.|++||+.+++++..+..|..+
T Consensus 223 ~~~v~~~d~~~~~~~~~---~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 223 FNTVSMIDTGTNKITAR---IPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp CCEEEEEETTTTEEEEE---EECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCcEEEEECCCCeEEEE---EecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 89999999988765433 2222 246779999999987 56788999999999999999999877654
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8.7e-29 Score=252.15 Aligned_cols=299 Identities=15% Similarity=0.230 Sum_probs=213.7
Q ss_pred cCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCC-CCCEEEEEeCC
Q 007757 243 NAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMD 321 (590)
Q Consensus 243 ~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~-~g~~L~sgs~D 321 (590)
+.+......+.+...++.++..|...|.|-..... ...+++..+.+|...|++++|+|. ++.+|++|+.|
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT---------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS---------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC---------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 44445556677777788888999999999654321 123577889999999999999994 28999999999
Q ss_pred CcEEEEEccCCC---------eeEEEeccCCCceeEEEEecC--CCEEEEEeCCCeEEEEECCCCcEEEEcc--------
Q 007757 322 TKVKIWDVVNSG---------KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFS-------- 382 (590)
Q Consensus 322 g~I~iWd~~~~~---------~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~I~vWd~~t~~~~~~~~-------- 382 (590)
|.|+|||+. .+ +++..+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+.
T Consensus 81 g~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 81 KTVKLWEED-PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp SCEEEEEEC-TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CeEEEEecC-CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 999999994 43 668888999999999999999 9999999999999999998876543322
Q ss_pred ------CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce--EEEEcccCCceeEEEEeCCC----CEEEEEeCC
Q 007757 383 ------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDSN----RRFVTSSDD 450 (590)
Q Consensus 383 ------~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~--~~~~~~h~~~V~~i~~~p~~----~~l~s~s~D 450 (590)
......++.+.+......++++++.++.+.+|+...+.. +..+.+|...|++++|+|++ ++|++++.|
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 234556788887644568999999999999998888765 67778899999999999998 899999999
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC----CeEEEEEccCceeecccccccCcccccceEEEE
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 526 (590)
|.|++||++.......... ...........+....+..+..+ ..+.+|+... ......+.+| ...|.+++
T Consensus 240 g~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h--~~~v~~~~ 313 (351)
T 3f3f_A 240 GRIRIFKITEKLSPLASEE-SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---VELLSEHDDH--NGEVWSVS 313 (351)
T ss_dssp SCEEEEEEEECC----------------------------------------CCSEE---EEEEEEECTT--SSCEEEEE
T ss_pred CeEEEEeCCCCcCccccCC-cccceeccCCCcccccccccccccccceeeeeccccc---ccEEEEEecc--cccEEEEE
Confidence 9999999976644433221 22233333344444444443322 3334443332 3334455566 56799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 007757 527 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 527 ~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
|+|++++|++|+.||.|+||++.+++.+..+
T Consensus 314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 314 WNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 9999999999999999999999987655444
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=7.1e-28 Score=251.18 Aligned_cols=287 Identities=11% Similarity=0.027 Sum_probs=213.4
Q ss_pred cccCCcceeeccccc-------ccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEe---
Q 007757 250 EHVEDKSTFHGKEET-------DYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG--- 319 (590)
Q Consensus 250 ~~~~~~s~~~~~~~~-------d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs--- 319 (590)
..+.+...++.+++. +...|.|........... .+.......|.+|...|.++++. +..+++|.
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~~~~ 93 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---QFHILSEFALEDNDDSPTAIDAS---KGIILVGCNEN 93 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---HEEEEEEEECCTTSCCCCEEEEE---TTEEEEECCCC
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---eeeeeeEEEccCCCCceEEEEeC---CCEEEEEECCC
Confidence 445555566655433 445788866544321100 01111224678999999999886 44666654
Q ss_pred --------CCCcEEEEEccCCCeeEEE---e-----ccCCCceeEEEEecCCCEEEEEe--CCCeEEEEECCCCcEEEEc
Q 007757 320 --------MDTKVKIWDVVNSGKCMRT---Y-----MGHSKAVRDISFCNDGTKFLTAS--YDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 320 --------~Dg~I~iWd~~~~~~~~~~---~-----~~h~~~V~~l~fspdg~~l~s~s--~Dg~I~vWd~~t~~~~~~~ 381 (590)
.|+.|++|++......+.. . ..+...+++++|+|||++|++++ .|++|+|||+.+++++..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 5778999998443332222 1 13445689999999999987654 7899999999999999999
Q ss_pred cCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE--EcccCCceeEEEEeCCCCEEEEEeCCC----cEEE
Q 007757 382 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE--YDQHLGAVNTITFVDSNRRFVTSSDDK----SLRV 455 (590)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~--~~~h~~~V~~i~~~p~~~~l~s~s~Dg----~I~i 455 (590)
.....+..+.|+|++ .++++++ ++.+++|+..++..+.. ...|...|.+++|+|++.++++++.|+ .+++
T Consensus 174 ~~~~~V~~v~fspdg---~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 174 ETRGEVKDLHFSTDG---KVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp ECSSCCCEEEECTTS---SEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred CCCCceEEEEEccCC---ceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 888888899998865 4666666 66778888887776543 346888999999999999999999887 5888
Q ss_pred EECCCCcEEE---EeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 456 WEFGIPVVIK---YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 456 wdl~~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
|++....... .....|...|.+++|+|+|++||+|+.|+.|+|||+.++..+.. .+.+| ...|++++|||||+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--~~~gH--~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--FKQAH--SFAITEVTISPDST 325 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--ETTSS--SSCEEEEEECTTSC
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE--ecCcc--cCCEEEEEECCCCC
Confidence 9886654321 12235788899999999999999999999999999998765532 23566 57799999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 007757 533 FVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t 550 (590)
+|++|+.|++|+|||+..
T Consensus 326 ~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 326 YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEETTSEEEEEECCT
T ss_pred EEEEEeCCCeEEEEEcCC
Confidence 999999999999999864
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=269.55 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=208.9
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 007757 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
+.-...|.+|+|+|+ |+++||++.|++|+ |. ...++ +.+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 12 ~~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~-~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 12 KEFEDWKNNLTWARD-GTLYLTTFPDISIG--QP-KYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CCCSSSSCCEEECTT-SCEEEECSSSEEEE--EE-CCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred hHhhccEEEEEECCC-CCEEEEEcCCceee--cc-cccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 455688999999999 99999999999999 75 34443 37999999999999998 4555555554322
Q ss_pred cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC-----ceeEEEEeCCCCEEEEEeCC
Q 007757 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-----AVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~-----~V~~i~~~p~~~~l~s~s~D 450 (590)
. +..+.....+..+.|+|++ ..|++++.||.|++||... ++..+. |.. .|.+++|+|+|++|++|+.|
T Consensus 78 ~-~~~~~~~~~V~~vawSPdG---~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 78 G-LLNSQPVCYPRVCKPSPID---DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp C-SSTTSCSCCEEEEEECSSS---SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred e-EeecCCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence 2 2222334456677777754 6799999999999999654 666666 665 49999999999999999999
Q ss_pred CcEEEEECCCCc-------EEEEee---cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccc-cCcccc
Q 007757 451 KSLRVWEFGIPV-------VIKYIS---EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVA 519 (590)
Q Consensus 451 g~I~iwdl~~~~-------~~~~~~---~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~ 519 (590)
|+|+|||+..+. .+..+. .+|...|.+++|+|+| +++++.|+.|++|++...........+ .+| .
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~ 226 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--R 226 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--S
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--c
Confidence 999999998874 245542 4577899999999999 888999999999999776532111223 244 3
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEE--cCCCCCEEEEEeCCCcEEEeC
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW--HPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~--sp~~~~~l~s~g~DG~I~iWD 590 (590)
..|.+++|+ |++|++++ ++.|++||+.+++......+|...|.+++| +| ++..|++++.||+ ++|.
T Consensus 227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEE
T ss_pred CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEe
Confidence 567889999 68999987 699999999998885555489999999999 99 6778999999999 9883
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.7e-27 Score=240.59 Aligned_cols=281 Identities=14% Similarity=0.130 Sum_probs=193.3
Q ss_pred ceeEEecCCCCC----eeEEEEcCCCCC--EEEEEeCCCcEEEEEccCCC---eeEEEeccCCCceeEEEEecCCCEEEE
Q 007757 290 RLVHTWSGHTKG----VSAIRFFPKYGH--LILSAGMDTKVKIWDVVNSG---KCMRTYMGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 290 ~~v~~l~gH~~~----V~~l~fsp~~g~--~L~sgs~Dg~I~iWd~~~~~---~~~~~~~~h~~~V~~l~fspdg~~l~s 360 (590)
++++.|+.-.+. |.++.|-..+.+ .+++++ ...|++|+. .+. ++++++.+|..+|..+.|.||..-|++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKA-LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEE-SSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEccc-CCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 566667665543 566666554222 566666 568999999 456 788999999887777777764332222
Q ss_pred Ee----------------CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEE--cCCcEEEEEC-CCCce
Q 007757 361 AS----------------YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDM-NTKEI 421 (590)
Q Consensus 361 ~s----------------~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~--~dg~I~vwDl-~t~~~ 421 (590)
.. .|+.+..|.+. .++...+..+ ..++++.+++ .|+.|++|++ .+++.
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s---------~g~~~~v~~l----~~g~lv~ss~~g~d~~V~~~~~s~dG~~ 170 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLK---------SGNIKAVLGL----TKRRLVSSSGTLSDQQVEVMTFAEDGGG 170 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEE---------EEEEEEEEEE----TTTEEEEEESSSTTCEEEEEEECTTSCE
T ss_pred eeeccccccceEEEEECCCccccccEEEe---------CCCeEEEEec----CCCcEEEecccCCCCcEEEEEECCCCce
Confidence 11 11111111111 1111111122 1224444433 5999999999 45888
Q ss_pred EEEEcccCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCCcEEEEeecCC--CCcccEEEEcCCCCEE---------
Q 007757 422 TQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWL--------- 487 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~--~~~i~~i~~sp~g~~l--------- 487 (590)
+..+..|...++.++|++ ++..|++++.|++|+|||+.+++.++.+...+ ...+.+++|+|+|.++
T Consensus 171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence 888889999999999999 78999999999999999999999999886433 2367778999999876
Q ss_pred ---EEEEcCCeEEEEEccCceeeccccc--ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC
Q 007757 488 ---AAQSLDNQILIYSTRERFQLNKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 488 ---~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~ 562 (590)
++|+.|++|++||..++..+..... ..+|. ..+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|..
T Consensus 251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~--~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~ 326 (356)
T 2w18_A 251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA--GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD 326 (356)
T ss_dssp -------CCEEEEEEETTTTEEEEEEEECCCTTCC--CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--
T ss_pred ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc--ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC
Confidence 5678899999999988765532210 12442 22333333 488999999999999999999999999999987
Q ss_pred CEE-EEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 563 VCI-GCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 ~V~-~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+. +++|+| ++.+|++|+.|++|+|||
T Consensus 327 ~vvs~vafSP-DG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 327 QHWSFVKWSG-TDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CCCCEEEECS-SSSEEEEECTTSCEEEEE
T ss_pred CeEEEEEECC-CCCEEEEEECCCcEEEec
Confidence 655 589999 788999999999999997
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.2e-29 Score=283.15 Aligned_cols=251 Identities=20% Similarity=0.294 Sum_probs=204.5
Q ss_pred EEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC--CCcEEEEccCC-CCceEEEEecCCCCCcEEEEEEcCCcEE
Q 007757 336 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 412 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~--t~~~~~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~ 412 (590)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. ++..+..+..+ ..+.++.|++.. .+++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-SCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-CCCEEEEEeCCCeEE
Confidence 35678999999999999999999999999999999998 44566666543 345567776652 247999999999999
Q ss_pred EEECCCCc--eEEEEcccCCceeEEEEeCC--CCEEEEEeCCCcEEEEECCCCcEE-EEeecCCCCcccEEEEcC-----
Q 007757 413 QWDMNTKE--ITQEYDQHLGAVNTITFVDS--NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHP----- 482 (590)
Q Consensus 413 vwDl~t~~--~~~~~~~h~~~V~~i~~~p~--~~~l~s~s~Dg~I~iwdl~~~~~~-~~~~~~~~~~i~~i~~sp----- 482 (590)
+||+.+++ .+..+..|...|++++|+|+ +..|++++.||.|++||++..... ......|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999986 77788899999999999999 999999999999999999876221 222246888999999999
Q ss_pred --------CCCEEEEEEcCCeEEEEEccCceee-cccccccCcccccceEEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 007757 483 --------NTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 483 --------~g~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~v~~v~~spd---g~~l~sgs~dg~I~iwd~~t 550 (590)
++.+|++++.||.|++||+++.... .....+.+| ...|.+++|+|+ +++|++|+.||.|++||+.+
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5899999999999999999875322 223445556 567999999999 99999999999999999988
Q ss_pred Ce-----EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 551 CK-----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 551 ~~-----~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+. .+.....|...|.+++|+| ++.+|++|+.||.|++||
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCB
T ss_pred CCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEe
Confidence 64 2333345888999999999 678999999999999997
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=6.8e-28 Score=250.24 Aligned_cols=247 Identities=13% Similarity=0.106 Sum_probs=184.9
Q ss_pred EEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEE
Q 007757 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG 405 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg 405 (590)
||++ ....++..+..|...|++++|+|+|++|++|+.++ ++||++.+++.+...... ...++.+.+... .++++|
T Consensus 3 i~s~-~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~ 77 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTN--YVAFVT 77 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSS--EEEEEC
T ss_pred cccc-cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCC--EEEEEE
Confidence 4555 45667777889999999999999999999988765 789999988777665443 355666666542 455778
Q ss_pred EcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCC
Q 007757 406 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNT 484 (590)
Q Consensus 406 ~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g 484 (590)
+.|+.|++||+.+++.+..+. +...|.++.|+++. ++++ .++.|++||+... ..+..+.. +...+++++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~-- 147 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN-- 147 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--
T ss_pred CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--
Confidence 889999999999999998886 67799999998753 4444 3789999999877 54444332 444566777
Q ss_pred CEEEE--EEcCCeEEEEEccCceee------------cc-cccccCcccccceEEEEEcCCCCEEEEEeCCCc-EEEEeC
Q 007757 485 NWLAA--QSLDNQILIYSTRERFQL------------NK-KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-CWFWDW 548 (590)
Q Consensus 485 ~~l~s--~s~dg~I~iwd~~~~~~~------------~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~-I~iwd~ 548 (590)
.++++ ++.+|.|++||+.+.... .. ...+.+| ...|.+++|+|+|++|++|+.||+ |+|||+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 66666 578999999999875311 11 3456666 577999999999999999999998 999999
Q ss_pred CCCeEEEEEe-c-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 549 KSCKVFRTLK-C-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 549 ~t~~~~~~l~-~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+++++..+. + |...|.+++|+| ++.+|++++.||+|+|||
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEE
Confidence 9999999998 5 999999999999 788999999999999997
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=9.9e-28 Score=247.14 Aligned_cols=281 Identities=14% Similarity=0.210 Sum_probs=221.8
Q ss_pred cCCCCCCcccCCcc---eeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 007757 243 NAGGEKGEHVEDKS---TFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 319 (590)
Q Consensus 243 ~~~~~~~~~~~~~s---~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs 319 (590)
+.+......+.+.. .+..++..|...+.|-.... ...+...+.+|...|++++|+|+ +++|++|+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~ 105 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-----------GQTIPKAQQMHTGPVLDVCWSDD-GSKVFTAS 105 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-----------SCEEEEEEEECSSCEEEEEECTT-SSEEEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-----------CceeEEEeccccCCEEEEEECcC-CCEEEEEc
Confidence 33445555666663 77788888999999965431 12344788899999999999998 99999999
Q ss_pred CCCcEEEEEccCCCeeEEEeccCCCceeEEEE--ecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCC
Q 007757 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF--CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 397 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~f--spdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
.||.|+|||+ ..+..+. +.+|...|.+++| ++++.+|++++.||.|++||+++++.+..+.......++.+..
T Consensus 106 ~dg~v~iwd~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--- 180 (368)
T 3mmy_A 106 CDKTAKMWDL-SSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--- 180 (368)
T ss_dssp TTSEEEEEET-TTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---
T ss_pred CCCcEEEEEc-CCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---
Confidence 9999999999 5666555 5679999999999 8899999999999999999999999988888776555555543
Q ss_pred CCcEEEEEEcCCcEEEEECCCCceEEEEc--ccCCceeEEEEeCCCCE----EEEEeCCCcEEEEECCCC---cEEEEee
Q 007757 398 KQNILLAGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRR----FVTSSDDKSLRVWEFGIP---VVIKYIS 468 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t~~~~~~~~--~h~~~V~~i~~~p~~~~----l~s~s~Dg~I~iwdl~~~---~~~~~~~ 468 (590)
..+++++.++.+++|+++......... .+...+.++.+.++... +++++.||.|++|+++.. .....+.
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 468999999999999998875443332 24456677777665544 999999999999999876 3333333
Q ss_pred cCCCC------------cccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEE
Q 007757 469 EPHMH------------SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 469 ~~~~~------------~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
.|.. .|.+++|+|++++|++++.||.|++||+.++..+. .+.+| ...+.+++|+|+|++|++
T Consensus 259 -~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~--~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 259 -CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---TSEQL--DQPISACCFNHNGNIFAY 332 (368)
T ss_dssp -CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---ECCCC--SSCEEEEEECTTSSCEEE
T ss_pred -eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---EecCC--CCCceEEEECCCCCeEEE
Confidence 2333 69999999999999999999999999999876653 34444 567899999999999999
Q ss_pred EeCCCcEEEEeC
Q 007757 537 GDGEGKCWFWDW 548 (590)
Q Consensus 537 gs~dg~I~iwd~ 548 (590)
|+.|+..+.|++
T Consensus 333 ~s~d~~~~~~~~ 344 (368)
T 3mmy_A 333 ASSYDWSKGHEF 344 (368)
T ss_dssp EECCCSTTCGGG
T ss_pred Eecccccccccc
Confidence 999886555543
No 119
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.8e-28 Score=250.31 Aligned_cols=248 Identities=17% Similarity=0.202 Sum_probs=194.8
Q ss_pred ccCCCCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCC-CCCEEEEEeC
Q 007757 242 GNAGGEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGM 320 (590)
Q Consensus 242 ~~~~~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~-~g~~L~sgs~ 320 (590)
++.+......+.+...++.++..|..+|.|-.... ...++.++.+|.+.|++|+|+|. .+++|++|+.
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~-----------~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG-----------GQILIADLRGHEGPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETT-----------EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC-----------CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence 34445555667777788899999999999954221 11356789999999999999863 3789999999
Q ss_pred CCcEEEEEccCCC--eeEEEeccCCCceeEEEEecC--CCEEEEEeCCCeEEEEECCCCcEE---EEccC-CCCceEEEE
Q 007757 321 DTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVI---RTFST-GKIPYVVKL 392 (590)
Q Consensus 321 Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspd--g~~l~s~s~Dg~I~vWd~~t~~~~---~~~~~-~~~~~~~~~ 392 (590)
|++|+|||+. .+ ..+..+.+|...|++++|+|+ +.+|++|+.|+.|++||+.++... ..+.. ......+.|
T Consensus 80 D~~v~iWd~~-~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 80 DRKVIIWREE-NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp TSCEEEECCS-SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred CCEEEEEECC-CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 9999999994 44 466778899999999999997 889999999999999999876422 22222 223445666
Q ss_pred ecCCC--------------CCcEEEEEEcCCcEEEEECCCC---ceEEEEcccCCceeEEEEeCCC----CEEEEEeCCC
Q 007757 393 NPDDD--------------KQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDSN----RRFVTSSDDK 451 (590)
Q Consensus 393 ~~~~~--------------~~~~lvsg~~dg~I~vwDl~t~---~~~~~~~~h~~~V~~i~~~p~~----~~l~s~s~Dg 451 (590)
.+... ...+|++|+.|+.|++||++.. ..+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 66421 1357999999999999999865 4667788999999999999986 7999999999
Q ss_pred cEEEEECCCCc----EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 452 SLRVWEFGIPV----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 452 ~I~iwdl~~~~----~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
+|++|++.... ....+ ..|...|.+++|+|++.+|++++.|+.|++|+..
T Consensus 239 ~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999987621 11122 2467889999999999999999999999999975
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6.5e-28 Score=253.97 Aligned_cols=256 Identities=13% Similarity=0.114 Sum_probs=176.3
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCee-----EEEeccCCCceeEEEEec--------CCCEEEEEe
Q 007757 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC-----MRTYMGHSKAVRDISFCN--------DGTKFLTAS 362 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~-----~~~~~~h~~~V~~l~fsp--------dg~~l~s~s 362 (590)
..|...+....+.++ +.+|++|+.|++|+|||+. .+.+ +..+.+|.+.|++|+|+| ++++|++|+
T Consensus 86 ~~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~-~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVY-SLFLACVCQDNTVRLIITK-NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp C----------CCEE-EEEEEEEETTSCEEEEEEE-TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccCCCcceeecCCC-CCEEEEEeCCCcEEEEECC-CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 345555555555555 7899999999999999994 4433 334679999999999998 789999999
Q ss_pred CCCeEEEEECCCCcEEEE-ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE----------------
Q 007757 363 YDKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---------------- 425 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~---------------- 425 (590)
.|++|+|||+.++..+.. +.....+..++|+|.+ .++|++|+.|+.|++||+++++.....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN--PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE--EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCC--CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 999999999988766554 4455666788888754 368999999999999999987543322
Q ss_pred ---------cccCCceeEEEEe-CCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCe
Q 007757 426 ---------DQHLGAVNTITFV-DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 495 (590)
Q Consensus 426 ---------~~h~~~V~~i~~~-p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~ 495 (590)
.+|...|.++.|. ++++.|++++.|+++++||+........+. .+...+..+.+.|+...+.
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~------- 313 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQGIS------- 313 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEEC-------
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEcccccccc-------
Confidence 3577889999997 789999999999999999998766555443 2444444444444321110
Q ss_pred EEEEEccCceeecccccccCcccccceEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCC
Q 007757 496 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 573 (590)
Q Consensus 496 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~ 573 (590)
.+ .+.....|+| ++.++++|+.||.|+|||+.+++++..+..|..+|.+++|+| +
T Consensus 314 -------------------~~---~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-d 370 (393)
T 4gq1_A 314 -------------------LF---PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-D 370 (393)
T ss_dssp -------------------SS---CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-T
T ss_pred -------------------cc---CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-C
Confidence 00 1111133443 455778889999999999999999988889999999999999 7
Q ss_pred CCEEEEEeCCCcE
Q 007757 574 QSKVATCGWDGLI 586 (590)
Q Consensus 574 ~~~l~s~g~DG~I 586 (590)
+++||+++.||.+
T Consensus 371 G~~LA~as~~Gv~ 383 (393)
T 4gq1_A 371 GSHLAIATEGSVL 383 (393)
T ss_dssp SSEEEEEESSEEE
T ss_pred CCEEEEEeCCCeE
Confidence 8899999988763
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-27 Score=255.74 Aligned_cols=289 Identities=9% Similarity=0.047 Sum_probs=221.8
Q ss_pred CCCCcccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 007757 246 GEKGEHVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 246 ~~~~~~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~ 325 (590)
........+...+.++.+.|..+|. +.. ...+.||.+.|.+++|+|+ | .++.+.
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~d----~~~--------------~~~l~gh~~~v~~V~FsPd-g-------~~~~~~ 70 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIGQ----PKY--------------AKDINCNSKNLFHVKEFPL-E-------FENKLD 70 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEEE----ECC--------------CSCCSSBGGGTEEEEEECC-C-------CCCTTT
T ss_pred cEEEEEECCCCCEEEEEcCCceeec----ccc--------------cceecCCCccEEEEEECCC-C-------CcceEE
Confidence 4556678888889999999998882 111 1233699999999999999 5 567776
Q ss_pred EEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC------ceEEEEecCCCCC
Q 007757 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI------PYVVKLNPDDDKQ 399 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~------~~~~~~~~~~~~~ 399 (590)
+|+. .+..+..+ .|...|.+++|+|+|.+|++++.||.|+|||..+ ++..+. ++. ..+++|+|++
T Consensus 71 ~~~~--~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG--- 141 (588)
T 2j04_A 71 FELA--QQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE--- 141 (588)
T ss_dssp TSCC--CSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS---
T ss_pred EEeC--CCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC---
Confidence 7665 22222222 5688999999999999999999999999999654 666666 442 6678887765
Q ss_pred cEEEEEEcCCcEEEEECCCCce-------EEEE----cccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE---EE
Q 007757 400 NILLAGMSDKKIVQWDMNTKEI-------TQEY----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV---IK 465 (590)
Q Consensus 400 ~~lvsg~~dg~I~vwDl~t~~~-------~~~~----~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~---~~ 465 (590)
.+|++|+.||+|++||+.++.+ +..+ .+|...|.+++|+|++ +++++.|++|++||+..... ..
T Consensus 142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEE
T ss_pred CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccccee
Confidence 6899999999999999998853 5666 6678899999999999 88999999999999987763 34
Q ss_pred EeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEE--cCCCCEEEEEeCCCcE
Q 007757 466 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF--SPDGRFVMSGDGEGKC 543 (590)
Q Consensus 466 ~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~--spdg~~l~sgs~dg~I 543 (590)
.+...|...|.+++|+ +.+|++++ ++.|++||+.+...... ..+| ...+..++| +|++..|++++.+|.
T Consensus 220 tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~---~~gh--~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 220 MIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL---KTGS--LENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp EEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE---ECSC--CSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred eecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE---EcCC--CceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 4544678899999999 68899887 69999999987654321 1145 466778999 999999999999999
Q ss_pred EEEeCCCCe-----------------------EEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 544 WFWDWKSCK-----------------------VFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 544 ~iwd~~t~~-----------------------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
++|....-. .+..+. +...|.+++|+| ++..+|+++.
T Consensus 291 klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 291 KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECT-TSSEEEEEEE
T ss_pred EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECC-CCCEEEEEEe
Confidence 999864211 111111 123489999999 7778988874
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.8e-28 Score=247.75 Aligned_cols=227 Identities=12% Similarity=0.104 Sum_probs=180.0
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC---------CCce
Q 007757 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---------TKEI 421 (590)
Q Consensus 351 fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~---------t~~~ 421 (590)
+.+++.+|++|+.||.|++||+.+++.+..+.. ..+..+.+++. +++++.|+.|++|+.. +++.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITT-PNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE-ECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEec-CCceeeeeCCc------eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 445788999999999999999999998887762 22222233332 8999999999999665 5554
Q ss_pred EEEEc-ccCCceeEEEEeC--CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEE
Q 007757 422 TQEYD-QHLGAVNTITFVD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 422 ~~~~~-~h~~~V~~i~~~p--~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~i 498 (590)
+..+. .|.+.|.+++|+| ++++|++++.||+|++||+++..........+...+.+++|+|++.+|++|+.||.|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 55443 6778999999999 99999999999999999999998876665556678999999999999999999999999
Q ss_pred EEccCceeecccccccC-cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec---CCCCE--EEEEEcCC
Q 007757 499 YSTRERFQLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVC--IGCEWHPL 572 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~-~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V--~~v~~sp~ 572 (590)
||++++.... ..+.+ | ...|.+++|+|+|.+|++++ ++.|++||+++++.+..+.. |...+ .+++|+|
T Consensus 197 wd~~~~~~~~--~~~~~~h--~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 270 (343)
T 3lrv_A 197 YNLSSPDQAS--SRFPVDE--EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD- 270 (343)
T ss_dssp EESSCTTSCC--EECCCCT--TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-
T ss_pred EECCCCCCCc--cEEeccC--CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-
Confidence 9998865441 22333 4 57899999999999999999 55999999999877655443 33333 3699999
Q ss_pred CCCEEEEEeC-CCcEEEeC
Q 007757 573 EQSKVATCGW-DGLIKYWD 590 (590)
Q Consensus 573 ~~~~l~s~g~-DG~I~iWD 590 (590)
++.+|++++. |+.|+||+
T Consensus 271 ~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp TSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEE
Confidence 7789999988 99999995
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.1e-26 Score=245.29 Aligned_cols=250 Identities=14% Similarity=0.106 Sum_probs=200.1
Q ss_pred ecCCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEEccC-CCeeEEEec--cCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 295 WSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVVN-SGKCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 295 l~gH~~~V~~l~fsp~~g~~L-~sgs~Dg~I~iWd~~~-~~~~~~~~~--~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
..+|.+.|++++|+|+ +++| ++|+.||.|+||++.. .+.++..+. .|...|++++|+|++++|++|+.+|.|++|
T Consensus 98 ~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp --CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 4588999999999999 7775 8999999999999931 677777776 677899999999999999999999999999
Q ss_pred ECCCCcEEE----Ecc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE-EcccCCceeEEEEeCCCCEE
Q 007757 371 DTETGQVIR----TFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 371 d~~t~~~~~----~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~-~~~h~~~V~~i~~~p~~~~l 444 (590)
++.++.... .+. ....+.++.|+++...+.+|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 998876543 333 234567788888622247899999999999999999988877 55899999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeec------------------------CCCCcccEEEEcCCCCEEEEEE-cCCeEEEE
Q 007757 445 VTSSDDKSLRVWEFGIPVVIKYISE------------------------PHMHSMPSISLHPNTNWLAAQS-LDNQILIY 499 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~------------------------~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iw 499 (590)
++++.|+.|++||+.++..+..+.. .....+.+++|+|++++|++++ .++.|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999999999999999888777642 2235688999999999999999 89999999
Q ss_pred Ec--cCceeecccccccCcccccceEEEEEcCCCCEEEEEeC------CCcEEEEeCC
Q 007757 500 ST--RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWK 549 (590)
Q Consensus 500 d~--~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~------dg~I~iwd~~ 549 (590)
++ .....+.....+.++ ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 99 544333344445554 56889999996544444442 4457887653
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=5.3e-25 Score=233.36 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=219.8
Q ss_pred ccCCcceeecccccccccceeecCCCccccCCCCccCCcceeE-----EecCCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 007757 251 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVH-----TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 325 (590)
Q Consensus 251 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~-----~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~ 325 (590)
.+.+...+......|...+.|-... .+++. .+.+|.+.|.+++|+|+ +.++++++.|+.|+
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~-------------g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINS-------------GQTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVH 194 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTT-------------CCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEE
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCC-------------CeEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEE
Confidence 3444455556666677777774332 22233 45689999999999998 89999999999999
Q ss_pred EEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEE
Q 007757 326 IWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA 404 (590)
Q Consensus 326 iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvs 404 (590)
+||+ ..++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++.+..+.....+..+.+.+++ ..+++
T Consensus 195 ~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g---~~l~~ 270 (433)
T 3bws_A 195 VFDL-KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDG---KELYI 270 (433)
T ss_dssp EEET-TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTS---SEEEE
T ss_pred EEEC-CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCC---CEEEE
Confidence 9999 67788888889999999999999999886554 7999999999999999988877777777777754 45666
Q ss_pred EE--------cCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEeecCCCCcc
Q 007757 405 GM--------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 475 (590)
Q Consensus 405 g~--------~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l-~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i 475 (590)
++ .|+.|++||+++++.+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+...+..+. +...+
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~ 347 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKP 347 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSE
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCC
Confidence 66 5889999999999877766 456688999999999755 666899999999999888777764 56778
Q ss_pred cEEEEcCCCCEEEEEEc---------------CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC-
Q 007757 476 PSISLHPNTNWLAAQSL---------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG- 539 (590)
Q Consensus 476 ~~i~~sp~g~~l~s~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~- 539 (590)
.+++|+|++++|++++. ||.|++||+.+........ . ...+..++|+|+|++|++++.
T Consensus 348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~---~---~~~~~~~~~s~dg~~l~~~~~~ 421 (433)
T 3bws_A 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE---A---GNQPTGLDVSPDNRYLVISDFL 421 (433)
T ss_dssp EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE---C---SSSEEEEEECTTSCEEEEEETT
T ss_pred CeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec---C---CCCCceEEEcCCCCEEEEEECC
Confidence 99999999999998887 5699999998876554332 2 245778999999999988875
Q ss_pred CCcEEEEeCCC
Q 007757 540 EGKCWFWDWKS 550 (590)
Q Consensus 540 dg~I~iwd~~t 550 (590)
++.|++|++..
T Consensus 422 d~~i~v~~~~~ 432 (433)
T 3bws_A 422 DHQIRVYRRDG 432 (433)
T ss_dssp TTEEEEEEETT
T ss_pred CCeEEEEEecC
Confidence 99999999764
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4.5e-24 Score=234.02 Aligned_cols=317 Identities=12% Similarity=0.084 Sum_probs=231.6
Q ss_pred cCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEcc-
Q 007757 252 VEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV- 330 (590)
Q Consensus 252 ~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~- 330 (590)
+++...+......|...+.|- .-..+++.++..+.. +.+++|+|+ +++|++++.|++|.+||+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D-------------~~t~~~~~~i~~g~~-~~~v~~spd-g~~l~v~~~d~~V~v~D~~~ 209 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVD-------------GDSKKIVKVIDTGYA-VHISRMSAS-GRYLLVIGRDARIDMIDLWA 209 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEE-------------TTTCCEEEEEECSTT-EEEEEECTT-SCEEEEEETTSEEEEEETTS
T ss_pred cCCCCEEEEEEcCCCeEEEEE-------------CCCceEEEEEecCcc-cceEEECCC-CCEEEEECCCCeEEEEECcC
Confidence 333444555556666666662 234567788873333 899999999 9999999999999999993
Q ss_pred CCCeeEEEeccCCCceeEEEEec----CCCEEEEEeC-CCeEEEEECCCCcEEEEccCCC------------CceEEEEe
Q 007757 331 NSGKCMRTYMGHSKAVRDISFCN----DGTKFLTASY-DKNIKYWDTETGQVIRTFSTGK------------IPYVVKLN 393 (590)
Q Consensus 331 ~~~~~~~~~~~h~~~V~~l~fsp----dg~~l~s~s~-Dg~I~vWd~~t~~~~~~~~~~~------------~~~~~~~~ 393 (590)
.+++++.++. +...+..++|+| +|++|++++. +++|.|||..+++++..+.... .+..+.++
T Consensus 210 ~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 210 KEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp SSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred CCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 2567777776 456789999999 9999999985 8999999999999998876521 23344555
Q ss_pred cCCCCCcEEEEEEcCCcEEEEECCCCceEE--EEcccCCceeEEEEeCCCCEEEEE-eCCCcEEEEECCCCcEEEEeecC
Q 007757 394 PDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQHLGAVNTITFVDSNRRFVTS-SDDKSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~--~~~~h~~~V~~i~~~p~~~~l~s~-s~Dg~I~iwdl~~~~~~~~~~~~ 470 (590)
++ ...++++...++.|.+||+.+.+.+. .+ .+...+.++.|+|++++|+++ ..+++|.+||+.+++++..+...
T Consensus 289 ~~--~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 289 HE--HPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp SS--SSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred CC--CCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 53 44778888889999999998876443 44 356678899999999987655 46899999999999888777532
Q ss_pred ---CCCcccEEEEcCC-CCEEEEEE-cCCeEEEEEccCcee----ecccccccCcccccceEEEEEcCCCCEEEEEe---
Q 007757 471 ---HMHSMPSISLHPN-TNWLAAQS-LDNQILIYSTRERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--- 538 (590)
Q Consensus 471 ---~~~~i~~i~~sp~-g~~l~s~s-~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs--- 538 (590)
|......+ ++|+ +..++++. .|+.|.+||+.+... ......+.++ ...+..++|+|+|++|++++
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCEEEECCTTC
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCC
Confidence 33323333 4777 55556654 579999999987211 2223444444 23455699999999999987
Q ss_pred ----CCCcEEEEeCCCCeEE-EEE--------ecCCCCEEEEEEcCCCCCEEEEEe----CCCcEEEeC
Q 007757 539 ----GEGKCWFWDWKSCKVF-RTL--------KCHEGVCIGCEWHPLEQSKVATCG----WDGLIKYWD 590 (590)
Q Consensus 539 ----~dg~I~iwd~~t~~~~-~~l--------~~h~~~V~~v~~sp~~~~~l~s~g----~DG~I~iWD 590 (590)
.+++|.+||+.+++.. ..+ ..+...+..+.|+|++..++++.. .|+.|.|||
T Consensus 443 ~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 2679999999998877 554 345678999999995444444432 479999997
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.5e-24 Score=229.95 Aligned_cols=264 Identities=11% Similarity=0.109 Sum_probs=207.4
Q ss_pred EEecCCCCCeeEEEEcCC-------------CCCEEEEEeCC------CcEEEEEccCCCeeEEEeccCCCceeEEEEec
Q 007757 293 HTWSGHTKGVSAIRFFPK-------------YGHLILSAGMD------TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN 353 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~-------------~g~~L~sgs~D------g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp 353 (590)
.++.+|...+.++++++. .+..|+.++.+ +.|++||+ .+...+.+.+|...|.+++|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~--~g~~~~~l~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY--DGYNQFVVHRSPQPLMSPAWSP 188 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET--TSCSCEEEEEESSCEEEEEECT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC--CCCCCEEEeCCCCcceeeEEcC
Confidence 568899999998888751 03455555543 79999998 3556778888999999999999
Q ss_pred CCCEEEEEeCCC---eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCc--EEEEECCCCceEEEEccc
Q 007757 354 DGTKFLTASYDK---NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK--IVQWDMNTKEITQEYDQH 428 (590)
Q Consensus 354 dg~~l~s~s~Dg---~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~--I~vwDl~t~~~~~~~~~h 428 (590)
+|++|++++.++ .|++||+.++++............+.|+|++. .++++++.++. |++||+.+++. ..+..|
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~ 265 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQI-RQVTDG 265 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCE-EECCCC
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEEEECCCCCE-EeCcCC
Confidence 999999999885 99999999998876554455566777777653 34547766654 99999998876 566778
Q ss_pred CCceeEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEcc
Q 007757 429 LGAVNTITFVDSNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTR 502 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~ 502 (590)
...+.++.|+|++++|++++. ++ .|++||+..+.... +. .+...+.+++|+|+|++|++++.+ ..|.+||+.
T Consensus 266 ~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 889999999999999998886 44 68888988766432 32 355678899999999999998875 589999998
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEEecCCCCEEEEEEcC
Q 007757 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg---~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
++... .+..+ ..+..++|+|+|++|++++.++ .|++||+. +.....+..|.+.|.+++|+|
T Consensus 344 ~~~~~----~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 344 TGGVQ----VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp TCCEE----ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred CCCEE----EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccc
Confidence 76542 22233 2577899999999999888776 79999986 556778888999999999999
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=8.5e-24 Score=213.64 Aligned_cols=179 Identities=11% Similarity=0.111 Sum_probs=142.9
Q ss_pred CCCcEEEEEccCCCeeEEEeccCCCceeEEEEec---CCCEEEEEeCCCeEEEEECCCCcEEEEccCCC----CceEEEE
Q 007757 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN---DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK----IPYVVKL 392 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fsp---dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~----~~~~~~~ 392 (590)
.|+.|++|++..+++.+..+.+|...++.++|++ ++.+|++++.|++|+|||+.++++++++..++ ....+.|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 3999999999777888899999999999999999 77999999999999999999999999997543 2345567
Q ss_pred ecCCCC---------CcEEEEEEcCCcEEEEECCCCceEEEE-----cccCCceeEEEEeCCCCEEEEEeCCCcEEEEEC
Q 007757 393 NPDDDK---------QNILLAGMSDKKIVQWDMNTKEITQEY-----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 393 ~~~~~~---------~~~lvsg~~dg~I~vwDl~t~~~~~~~-----~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl 458 (590)
+|++.. ...+++|+.|++|++||..+++.+..+ .+|...+.+..++ +..+++++.|++|+|||+
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEEC
Confidence 775420 012467889999999999999887765 3666665555554 789999999999999999
Q ss_pred CCCcEEEEeecCCCCc-ccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 459 GIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~-i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
.+++.+..+.. |... +.+++|+|+|++|++|+.|++|+|||+
T Consensus 313 ~tGk~l~tL~g-H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTALLPP-VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEEECC-C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEecC-CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999988753 5544 456899999999999999999999985
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=3.1e-25 Score=233.45 Aligned_cols=238 Identities=14% Similarity=0.085 Sum_probs=167.2
Q ss_pred ccCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcC--------CCCCEEEEEeCCC
Q 007757 251 HVEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFP--------KYGHLILSAGMDT 322 (590)
Q Consensus 251 ~~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp--------~~g~~L~sgs~Dg 322 (590)
...+...++.+...|..+|+|-..... .....++.++.||.+.|++|+|+| + +++|+||+.|+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~--------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~D~ 166 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNET--------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGDDC 166 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTE--------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEETTS
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCc--------cceeeeecccCCCCCceEEEEEccccccccCCC-CCEEEEEECCC
Confidence 345666788899999999999654322 112234566889999999999998 5 88999999999
Q ss_pred cEEEEEccCCCeeEEEeccCCCceeEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEccC------------------
Q 007757 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFST------------------ 383 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~------------------ 383 (590)
+|+|||+ ..+.++..+.+|...|.+++|+|++ .+|++++.|++|++||+.+++.......
T Consensus 167 tv~~Wd~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 167 TLIIWRL-TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEEEEEE-ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred eEEEEEC-CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999999 5667777788899999999999987 5899999999999999998865443211
Q ss_pred --------CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEE------------------
Q 007757 384 --------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF------------------ 437 (590)
Q Consensus 384 --------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~------------------ 437 (590)
......+.+.. ..+..+++++.|+.+++||+.++.....+..|...+..+.+
T Consensus 246 ~~~~~~~~~~~v~~v~~~~--~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIG--SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp ------CCSSSCSEEEEET--TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeecccccccceeeeeec--CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 11223444442 23478999999999999999988776666555544444333
Q ss_pred eC--CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 438 VD--SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 438 ~p--~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
++ ++.++++|+.||.|++||+..+....... .+..+|.+++|+|+|++||+++.+| +.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 32 23356778899999999999887776654 4777999999999999999998655 6666654
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.5e-23 Score=229.87 Aligned_cols=274 Identities=14% Similarity=0.113 Sum_probs=217.0
Q ss_pred EcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEEC--CCCcEEEEccCC
Q 007757 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT--ETGQVIRTFSTG 384 (590)
Q Consensus 307 fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~--~t~~~~~~~~~~ 384 (590)
|+|+ +.++++++.|++|.+||. ..++++.++..+.. +.+++|+|+|++|++++.|+.|.+||+ .+++++..+..+
T Consensus 145 ~~p~-~~~~vs~~~d~~V~v~D~-~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 145 LDLP-NLFSVTLRDAGQIALVDG-DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp CCGG-GEEEEEEGGGTEEEEEET-TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred cCCC-CEEEEEEcCCCeEEEEEC-CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence 6787 789999999999999999 68888888874333 899999999999999999999999999 899999999888
Q ss_pred CCceEEEEec----CCCCCcEEEEEE-cCCcEEEEECCCCceEEEEcc----------cC-CceeEEEEeCCCCE-EEEE
Q 007757 385 KIPYVVKLNP----DDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQ----------HL-GAVNTITFVDSNRR-FVTS 447 (590)
Q Consensus 385 ~~~~~~~~~~----~~~~~~~lvsg~-~dg~I~vwDl~t~~~~~~~~~----------h~-~~V~~i~~~p~~~~-l~s~ 447 (590)
..+..+.+++ ++ .++++++ .++.|.+||..+++++..+.. |. ..+.++.++|++.. +++.
T Consensus 222 ~~p~~va~sp~~~~dg---~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 222 IEARSVESSKFKGYED---RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp SEEEEEEECCSTTCTT---TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCcceEEeCCCcCCCC---CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 7788888887 44 4566665 689999999999999888764 22 37889999997665 5666
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeeccccccc-CcccccceEEE
Q 007757 448 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFA-GHIVAGYACQV 525 (590)
Q Consensus 448 s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~v~~v 525 (590)
..++.|.+||+.....+......+...+..+.|+|++++|++++ .++.|.+||+.++.....+.... .| .+....+
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph--~g~g~~~ 376 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH--PGRGANF 376 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC--CTTCEEE
T ss_pred CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC--CCCCccc
Confidence 78899999999875543311113456688999999999877665 57999999999887654443211 12 1222223
Q ss_pred EEcCC-CCEEEEEe-CCCcEEEEeCCC-------CeEEEEEecCCCCEEEEEEcCCCCCEEEEEe-------CCCcEEEe
Q 007757 526 NFSPD-GRFVMSGD-GEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-------WDGLIKYW 589 (590)
Q Consensus 526 ~~spd-g~~l~sgs-~dg~I~iwd~~t-------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-------~DG~I~iW 589 (590)
++|+ |.+++++. .+++|.+||+.+ ++++.++..|.+.+..++++| ++.+|++++ .+++|.||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEE
Confidence 4777 66667765 689999999998 899999999988889999999 677888876 37799999
Q ss_pred C
Q 007757 590 D 590 (590)
Q Consensus 590 D 590 (590)
|
T Consensus 455 d 455 (543)
T 1nir_A 455 D 455 (543)
T ss_dssp E
T ss_pred E
Confidence 7
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.3e-23 Score=222.78 Aligned_cols=276 Identities=12% Similarity=0.077 Sum_probs=209.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEe----CCC----cEEEEEc--cCCCeeE--EEeccCCCceeEEEEec-------------
Q 007757 299 TKGVSAIRFFPKYGHLILSAG----MDT----KVKIWDV--VNSGKCM--RTYMGHSKAVRDISFCN------------- 353 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs----~Dg----~I~iWd~--~~~~~~~--~~~~~h~~~V~~l~fsp------------- 353 (590)
...|....|.+.+..++++|+ .+| .|+|||+ . +++++ ..+.+|...++.+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGA-PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSS-TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCC-CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 356778889998677888887 467 8999998 5 34455 56889999898888875
Q ss_pred -CCCEEEEEeCC------CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC---cEEEEECCCCceEE
Q 007757 354 -DGTKFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQ 423 (590)
Q Consensus 354 -dg~~l~s~s~D------g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg---~I~vwDl~t~~~~~ 423 (590)
.+..|+.++.+ +.|++||+..+..............+.|+|++ ..|++++.++ .|++||+.+++..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg---~~la~~s~~~~~~~i~~~d~~tg~~~- 216 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG---SKLAYVTFESGRSALVIQTLANGAVR- 216 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS---SEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC---CEEEEEEecCCCcEEEEEECCCCcEE-
Confidence 16677776664 79999999865544444445566777888765 5688887775 9999999998875
Q ss_pred EEcccCCceeEEEEeCCCCEEE-EEeCCCc--EEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-C--eEE
Q 007757 424 EYDQHLGAVNTITFVDSNRRFV-TSSDDKS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QIL 497 (590)
Q Consensus 424 ~~~~h~~~V~~i~~~p~~~~l~-s~s~Dg~--I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-g--~I~ 497 (590)
.+..|.+.+.+++|+|++++|+ +++.++. |++||+.++... .+. .+...+.+++|+|+|++|++++.+ + .|.
T Consensus 217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-CCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence 4567888999999999999888 6666655 999999887653 333 466789999999999999988864 4 688
Q ss_pred EEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCC
Q 007757 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d---g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 574 (590)
+||+.++... .+..+ ...+..++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+| ++
T Consensus 295 ~~d~~~~~~~----~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg 365 (415)
T 2hqs_A 295 KVNINGGAPQ----RITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NG 365 (415)
T ss_dssp EEETTSSCCE----ECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TS
T ss_pred EEECCCCCEE----EEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CC
Confidence 8888765422 12222 3457789999999999988754 58999999998874 455554 789999999 67
Q ss_pred CEEEEEeCCC---cEEEeC
Q 007757 575 SKVATCGWDG---LIKYWD 590 (590)
Q Consensus 575 ~~l~s~g~DG---~I~iWD 590 (590)
.+|++++.|+ .|++||
T Consensus 366 ~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 366 TMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp SEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEcCCCccEEEEEE
Confidence 7788877776 688885
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=3.2e-22 Score=204.12 Aligned_cols=272 Identities=7% Similarity=0.139 Sum_probs=193.1
Q ss_pred CEEEEEeCCCcEEEEEccCCC--eeEEEeccCCCceeEEEEecCCCEEEEEeCC-CeEEEEECC--CCc--EEEEccCCC
Q 007757 313 HLILSAGMDTKVKIWDVVNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYD-KNIKYWDTE--TGQ--VIRTFSTGK 385 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D-g~I~vWd~~--t~~--~~~~~~~~~ 385 (590)
.++++++.|+.|++|++...+ ..+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++. ++. .+..+....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 344555789999999994333 23333 3577889999999999999998887 999999998 555 344555555
Q ss_pred CceEEEEecCCCCCcEEEEEEcCCcEEEEECC---CCceEEEEcccCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCC-
Q 007757 386 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI- 460 (590)
Q Consensus 386 ~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~---t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~- 460 (590)
.+..+.+++++. .+++++..++.|.+||+. +.+.+..+.. ...+.+++|+|++++|++++ .++.|++||+..
T Consensus 85 ~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 85 SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 677788877653 344455558899999994 4445555543 34689999999999888877 899999999987
Q ss_pred CcEEE----EeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccC--cee--eccccccc-CcccccceEEEEEcCC
Q 007757 461 PVVIK----YISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRE--RFQ--LNKKKRFA-GHIVAGYACQVNFSPD 530 (590)
Q Consensus 461 ~~~~~----~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~--~~~--~~~~~~~~-~~~~~~~v~~v~~spd 530 (590)
+.... .+.......+..++|+|++++|++++ .++.|.+|++.. +.. ......+. ++.....+..++|+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 44322 22333445678899999999876665 789999999953 211 11111111 1111235667999999
Q ss_pred CCEEEE-EeCCCcEEEEeCC----CCeEEEEEecCCCCEEEEEEcCCCCCEEEEEe-CCCcEEEeC
Q 007757 531 GRFVMS-GDGEGKCWFWDWK----SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 531 g~~l~s-gs~dg~I~iwd~~----t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~iWD 590 (590)
|++|++ +..++.|.+||+. +.+.+..+..+.. +.+++|+| ++.+|++++ .++.|.+|+
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEecCCCCeEEEEE
Confidence 998874 4478999999998 3455666665555 88999999 566666666 689999993
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2.1e-22 Score=205.29 Aligned_cols=275 Identities=11% Similarity=0.109 Sum_probs=199.5
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC-CCeEEEEECCCCcE-EEEccC
Q 007757 306 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQV-IRTFST 383 (590)
Q Consensus 306 ~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~~t~~~-~~~~~~ 383 (590)
.|.++.+.++++++.++.|.+||+ .+++.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFST-DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEET-TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeC-cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456664666888889999999999 6778877777777777 9999999997777766 89999999999987 777766
Q ss_pred CCCceE-EEEecCCCCCcEEEEEEcCC---cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEE-EEeCCCc-EEEEE
Q 007757 384 GKIPYV-VKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV-TSSDDKS-LRVWE 457 (590)
Q Consensus 384 ~~~~~~-~~~~~~~~~~~~lvsg~~dg---~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~-s~s~Dg~-I~iwd 457 (590)
+..+.. +.+++++ .+++++..++ .|.+||+.+++.+..+..+ ....+++|+|++++|+ +...++. |.+|+
T Consensus 82 ~~~~~~~~~~s~dg---~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 82 GQSSMADVDITPDD---QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp CSSCCCCEEECTTS---SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred CCCCccceEECCCC---CEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 666666 8888765 4566555443 8999999999988877643 4568999999998555 4456688 99999
Q ss_pred CCCCcEE----EEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 458 FGIPVVI----KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 458 l~~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
+.....+ .... ........++|+|+++++++++ .++.|.+||+.++........+.. ...+..++|+|+|+
T Consensus 158 ~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 158 IDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRDGS 233 (331)
T ss_dssp ECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTTSS
T ss_pred ECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCCCC
Confidence 8754322 1111 3445678999999999766655 578999999987655111222222 23455799999999
Q ss_pred EEEEEe-CCCcEEEEeCCCCeE--EEEEecC----CC---CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 533 FVMSGD-GEGKCWFWDWKSCKV--FRTLKCH----EG---VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 533 ~l~sgs-~dg~I~iwd~~t~~~--~~~l~~h----~~---~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+|++++ .++.|.+||+.+++. +..+..+ .. .+..++|+|++..+++++..++.|.+||
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 876655 578899999999887 5554433 22 2255899995443445666677999996
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=3e-21 Score=198.10 Aligned_cols=272 Identities=14% Similarity=0.099 Sum_probs=209.9
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeC-------CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEE-eCCCeEEE
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGM-------DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKY 369 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~-------Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I~v 369 (590)
....+..++|+|+ +++|++++. ++.|.+||. .+++.+..+.. ...+..++|+|+|++++.+ ..++.|.+
T Consensus 39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDP-VTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECT-TTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcC-CCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 4456889999999 777777764 568999999 57777777654 3458899999999966554 55799999
Q ss_pred EECCCCcEEEEccCCCC----------ceEEEEecCCCCCcEEEEE-EcCCcEEEEECCCCceEEEEcccCCceeEEEEe
Q 007757 370 WDTETGQVIRTFSTGKI----------PYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~----------~~~~~~~~~~~~~~~lvsg-~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~ 438 (590)
||+.+++.+..+..+.. +..+.+++++. .+++++ ..++.|.+||+.+++.+..+..+...+.++.|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 99999999888776432 45677777543 344444 257899999999999998887666678999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeecC---CCCcccEEEEcCCCCEEEEEEcC-CeEEEEEccCceeeccccccc
Q 007757 439 DSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLD-NQILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 439 p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~s~s~d-g~I~iwd~~~~~~~~~~~~~~ 514 (590)
|++++|++++.++.|.+||+.+......+... +...+..++|+|+++++++++.+ +.|.+||+.++........
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-- 271 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-- 271 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--
Confidence 99999999999999999999998887776542 34457789999999988777655 8999999987765543332
Q ss_pred CcccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCC
Q 007757 515 GHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
+. ...++|+|+|+++++++ .++.|.+||..+++.+..+..+. .+.+++|+| ++.+|+.+..+
T Consensus 272 ~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 PE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSA-DGKTLYVSVKQ 334 (353)
T ss_dssp SS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECT-TSCEEEEEEEC
T ss_pred CC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcC-CCCEEEEEEcc
Confidence 11 13589999999766555 68999999999999998887644 679999999 45544444433
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1e-22 Score=231.51 Aligned_cols=282 Identities=11% Similarity=0.036 Sum_probs=208.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeC-CC-----cEEEEEccCCCeeEEEeccCCC------------------------ceeE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGM-DT-----KVKIWDVVNSGKCMRTYMGHSK------------------------AVRD 348 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~-Dg-----~I~iWd~~~~~~~~~~~~~h~~------------------------~V~~ 348 (590)
...|.+++|+|+ |++|++++. |+ .|++||+ .+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDI-GSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEET-TTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEEC-CCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 456999999999 999999998 88 8999999 56776666655433 3899
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCC---cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE
Q 007757 349 ISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 349 l~fspdg~~l~s~s~Dg~I~vWd~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~ 425 (590)
++|+|||++|++++. +.|.+||+.++ ..............+.|+|++ ..|+.++ ++.|++||+.+++.....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG---~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG---GFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS---SEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC---CEEEEEe-CCcEEEEecCCCCEEEec
Confidence 999999999999986 99999999988 554433334556677888765 4566665 579999999998766554
Q ss_pred cccCCc----------------eeEEEEeCCCCEEEEEeCCC---------------------------------cEEEE
Q 007757 426 DQHLGA----------------VNTITFVDSNRRFVTSSDDK---------------------------------SLRVW 456 (590)
Q Consensus 426 ~~h~~~----------------V~~i~~~p~~~~l~s~s~Dg---------------------------------~I~iw 456 (590)
..+... +.++.|+|+|++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 433332 47899999999999988765 78999
Q ss_pred ECCC-CcEEEEeec-CCCCcccEEEEcCCCCEEEEEEc-----CCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 457 EFGI-PVVIKYISE-PHMHSMPSISLHPNTNWLAAQSL-----DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 457 dl~~-~~~~~~~~~-~~~~~i~~i~~sp~g~~l~s~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
|+.+ +........ .+...+..++| |+|++|++++. +..|++||+.++............ ....+..++|+|
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~~~~sp 346 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT-WVPLHNSLRFLD 346 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS-CCCCCSCCEECT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC-cCCcCCceEECC
Confidence 9987 665443322 36677899999 99999998765 467999999876544322211100 000234689999
Q ss_pred CCCEEEEEeCCCcEEEEeCC-CCeEEEEEecCCCCEEEE-EEcCCCCCEEEEEeCCC--cEEEeC
Q 007757 530 DGRFVMSGDGEGKCWFWDWK-SCKVFRTLKCHEGVCIGC-EWHPLEQSKVATCGWDG--LIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~-t~~~~~~l~~h~~~V~~v-~~sp~~~~~l~s~g~DG--~I~iWD 590 (590)
||+++++++.+|.+.||.+. ++. ...+..|...|..+ .|+|++..++++++.++ .++||+
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 99999999999987777665 445 77777788888887 59995444445666666 888984
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.1e-21 Score=199.68 Aligned_cols=261 Identities=10% Similarity=0.071 Sum_probs=199.9
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccCC-C-ceeEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEccCCC----
Q 007757 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-K-AVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGK---- 385 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~-~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~~---- 385 (590)
.+|++++.++.|.+||+ .+++.+..+.... . .+.+++|+|+|++++ +++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEEC-CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 47899999999999999 5777777765332 2 588999999998665 55567899999999999988776654
Q ss_pred --CceEEEEecCCCCCcEEEEEE------------cCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCC
Q 007757 386 --IPYVVKLNPDDDKQNILLAGM------------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK 451 (590)
Q Consensus 386 --~~~~~~~~~~~~~~~~lvsg~------------~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg 451 (590)
.+..+.+++++ ..++++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++
T Consensus 81 ~~~~~~~~~s~dg---~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 81 VKSLFGAALSPDG---KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp EECTTCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred cccccceEECCCC---CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence 56667777754 3566664 579999999999988877764 4567889999999988888 68
Q ss_pred cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC------------------------eEEEEEccCceee
Q 007757 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN------------------------QILIYSTRERFQL 507 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg------------------------~I~iwd~~~~~~~ 507 (590)
.|++||+.+......+..... ...+.|+|++.+|++.+..+ .|.+||+.++...
T Consensus 155 ~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 155 DLHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp SEEEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 899999999887776653321 12337889888766554332 4689998876543
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 508 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
. ..+..+ ...+..++|+|+|++|+++ ++.|++||+.+++.+..+..+ ..+.+++|+| ++.+|++++.++.|+
T Consensus 233 -~-~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 233 -M-REVRIM--DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVWLGGALGDLA 304 (337)
T ss_dssp -E-EEEEEC--SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEEEESBSSEEE
T ss_pred -E-eecCCC--CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEEEEcCCCcEE
Confidence 1 122222 2456679999999999988 689999999999998888754 4568999999 667888889999999
Q ss_pred EeC
Q 007757 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
+||
T Consensus 305 v~d 307 (337)
T 1pby_B 305 AYD 307 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.1e-21 Score=195.01 Aligned_cols=252 Identities=13% Similarity=0.129 Sum_probs=184.8
Q ss_pred EEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC-CcEEEEccCC--CCceEEEEe
Q 007757 317 SAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTG--KIPYVVKLN 393 (590)
Q Consensus 317 sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~~--~~~~~~~~~ 393 (590)
+++.|+.|++||+ ..++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++........ ..+..+.|+
T Consensus 17 ~~~~~~~i~~~d~-~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNI-RTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEET-TTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeC-CCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 3467899999999 455544 5567899999999999999999987 78999999999 8877665444 344567777
Q ss_pred cCCCCCcEEEEEEc----CCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEE-EEeCCCcEEEEECCCC-cEEEEe
Q 007757 394 PDDDKQNILLAGMS----DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV-TSSDDKSLRVWEFGIP-VVIKYI 467 (590)
Q Consensus 394 ~~~~~~~~lvsg~~----dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~-s~s~Dg~I~iwdl~~~-~~~~~~ 467 (590)
+++ ..|++++. ...|+.|++.++.. ..+..+ ..+.++.|+|++++|+ +++.++.++||+++.. .....+
T Consensus 94 pdg---~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 94 PDG---ALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL 168 (297)
T ss_dssp TTS---SEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred CCC---CEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc
Confidence 754 56777772 34566666666553 334333 3589999999999887 7778999999986432 223333
Q ss_pred ecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEcc-CceeecccccccCcccccceEEEEEcCCCCEEEEEeCC-----
Q 007757 468 SEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE----- 540 (590)
Q Consensus 468 ~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d----- 540 (590)
..+...+.+++|+|++++|++++ .++.+.+|++. ..... ..+..+ ...+..++|+|+|++|++++.+
T Consensus 169 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 169 -THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV---ERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp -CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE---EECCCC--SEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred -ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc---EEEecC--CcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 34667889999999999888776 48899999876 22222 223333 3467789999999999888765
Q ss_pred ------CcEEEEeCCCCeE--EEEEecCCCCEEEEEEcCCCCCEEEEEeCC
Q 007757 541 ------GKCWFWDWKSCKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 541 ------g~I~iwd~~t~~~--~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
+.|++||+.+++. +..+..|...+.+++|+| ++.+|++++.|
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEEC
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEec
Confidence 5699999988765 444557888899999999 56667666654
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=3.3e-20 Score=188.96 Aligned_cols=274 Identities=9% Similarity=0.020 Sum_probs=194.3
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEEccCCCee-EEEeccCCCceeEEEEecCCCEEEEEeCCC-
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVVNSGKC-MRTYMGHSKAVRDISFCNDGTKFLTASYDK- 365 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs-~Dg~I~iWd~~~~~~~-~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg- 365 (590)
.+++..+..+...+ +++|+|+ +++|++++ .++.|.+||+ ..++. ...+..+...+.+++|+|+|++|+++..++
T Consensus 30 ~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 106 (331)
T 3u4y_A 30 LEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIET-QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH 106 (331)
T ss_dssp CCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEEC-SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred cceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEEC-CCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence 45566666667777 9999999 77555555 4899999999 56666 777777777666699999999999555443
Q ss_pred --eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCc-EEEEECCCCceEE----EEcccCCceeEEEEe
Q 007757 366 --NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK-IVQWDMNTKEITQ----EYDQHLGAVNTITFV 438 (590)
Q Consensus 366 --~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~-I~vwDl~t~~~~~----~~~~h~~~V~~i~~~ 438 (590)
.|.+||+.+++.+..+..+..+..+.+++++. .+++++..++. |.+|++.....+. ........+.+++|+
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s 184 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGN--GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFT 184 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECCTTEEEEEECTTSS--CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEEC
T ss_pred cccEEEEECCCCCeEEEEECCCCccceEECCCCC--EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEEC
Confidence 89999999999999888887788888888653 46777777788 9999987643321 112344568999999
Q ss_pred CCCCEEEE-EeCCCcEEEEECCCCcE---EEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccc
Q 007757 439 DSNRRFVT-SSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRF 513 (590)
Q Consensus 439 p~~~~l~s-~s~Dg~I~iwdl~~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~ 513 (590)
|+++++++ +..++.|++||+.+... +..+. ....+..++|+|+|++|++++ .++.|.+||+.++..... ..+
T Consensus 185 pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~-~~~ 261 (331)
T 3u4y_A 185 PDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV-KSF 261 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE-EEE
T ss_pred CCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee-ccc
Confidence 99996655 45689999999988876 66664 346678999999999877665 467899999987654111 111
Q ss_pred cCc-----ccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcC
Q 007757 514 AGH-----IVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 514 ~~~-----~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
... .....+..++|+|+|++|++++ .++.|.+||+..... ..+......-..+.++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~g~~~~~~~ 324 (331)
T 3u4y_A 262 GHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV-GYVAGIEANGGIAICHP 324 (331)
T ss_dssp ECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE-EECTTCCCBSCEEECCC
T ss_pred ccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc-cceecccccCCeEEECC
Confidence 111 0011124589999999886655 567999999976543 33333333222344455
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=4.6e-20 Score=188.02 Aligned_cols=293 Identities=12% Similarity=0.110 Sum_probs=198.0
Q ss_pred cccccccccceeecCCCccccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCC-CcEEEEEccC-CC--ee
Q 007757 260 GKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD-TKVKIWDVVN-SG--KC 335 (590)
Q Consensus 260 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~D-g~I~iWd~~~-~~--~~ 335 (590)
.....|...+.|-..... ..+.+..+ .|...+.+++|+|+ +++|++++.+ +.|.+|++.. .+ ..
T Consensus 9 ~~~~~~~~v~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~ 76 (343)
T 1ri6_A 9 IASPESQQIHVWNLNHEG----------ALTLTQVV-DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTF 76 (343)
T ss_dssp EEEGGGTEEEEEEECTTS----------CEEEEEEE-ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EeCCCCCeEEEEEECCCC----------cEEEeeeE-ecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceee
Confidence 333556777777543211 01223332 57788999999999 8888888876 9999999941 23 23
Q ss_pred EEEeccCCCceeEEEEecCCCEEEEEeC-CCeEEEEEC---CCCcEEEEccCCCCceEEEEecCCCCCcEEEEEE-cCCc
Q 007757 336 MRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDT---ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM-SDKK 410 (590)
Q Consensus 336 ~~~~~~h~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~---~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~-~dg~ 410 (590)
+..+..+. .+.+++|+|++++|++++. ++.|.+||+ .+.+.+..+.....+..+.+.+++ ..+++++ .++.
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~ 152 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN---RTLWVPALKQDR 152 (343)
T ss_dssp EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS---SEEEEEEGGGTE
T ss_pred ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCC---CEEEEecCCCCE
Confidence 44555444 8899999999998877765 889999999 444566666666667778888765 3455555 8999
Q ss_pred EEEEECCC-CceEE----EEcc-cCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCC--CcE--EEEeec-CC----CCc
Q 007757 411 IVQWDMNT-KEITQ----EYDQ-HLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI--PVV--IKYISE-PH----MHS 474 (590)
Q Consensus 411 I~vwDl~t-~~~~~----~~~~-h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~--~~~--~~~~~~-~~----~~~ 474 (590)
|++||+.+ ++... .+.. ....+.+++|+|++++|++++ .++.|.+|++.. +.. ...+.. +. ...
T Consensus 153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence 99999987 65432 2222 345788999999999776554 789999999953 222 222221 11 234
Q ss_pred ccEEEEcCCCCEEEEEE-cCCeEEEEEccCc-eeecccccccCcccccceEEEEEcCCCCEEEEEe-CCCcEEEE--eCC
Q 007757 475 MPSISLHPNTNWLAAQS-LDNQILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFW--DWK 549 (590)
Q Consensus 475 i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iw--d~~ 549 (590)
+..++|+|++++|+++. .++.|.+|++... ........+..+ ..+..++|+|+|++|++++ .++.|.+| |..
T Consensus 233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 55799999999887555 7899999999731 111122222222 2256799999999988887 68999999 555
Q ss_pred CCeE--EEEEecCCCCEEEEEEcCC
Q 007757 550 SCKV--FRTLKCHEGVCIGCEWHPL 572 (590)
Q Consensus 550 t~~~--~~~l~~h~~~V~~v~~sp~ 572 (590)
+++. +..+... ....+++|.++
T Consensus 310 ~g~~~~~~~~~~g-~~p~~i~~~~~ 333 (343)
T 1ri6_A 310 QGLLHEKGRYAVG-QGPMWVVVNAH 333 (343)
T ss_dssp TTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred CceeeEccccccC-CCCeeEEEEcc
Confidence 6643 4455543 34567888773
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=7.3e-21 Score=216.13 Aligned_cols=275 Identities=9% Similarity=0.024 Sum_probs=198.4
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe--eEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 378 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~ 378 (590)
.|.+++|+|+ |++|++++. +.|++||+ ..+. .+..+..|...+.+++|+|||++|++++ ++.|.+||+.+++..
T Consensus 110 ~v~~~~~SpD-g~~l~~~~~-~~i~~~d~-~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 110 GIVDYQWSPD-AQRLLFPLG-GELYLYDL-KQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp ESCCCEECTT-SSEEEEEET-TEEEEEES-SSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcceeEECCC-CCEEEEEeC-CcEEEEEC-CCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 4899999999 899998886 99999999 3442 4556778888999999999999999987 569999999998877
Q ss_pred EEccCCCC-----------------ceEEEEecCCCCCcEEEEEEcCC--------------------------------
Q 007757 379 RTFSTGKI-----------------PYVVKLNPDDDKQNILLAGMSDK-------------------------------- 409 (590)
Q Consensus 379 ~~~~~~~~-----------------~~~~~~~~~~~~~~~lvsg~~dg-------------------------------- 409 (590)
.....+.. ...+.|+|++ ..|++++.|+
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg---~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD---SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS---SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCC---CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 65544332 2457777765 3466665554
Q ss_pred -cEEEEECCC-CceEEEEc--ccCCceeEEEEeCCCCEEEEEeC-----CCcEEEEECCCCcEEEEeecCCCC---cccE
Q 007757 410 -KIVQWDMNT-KEITQEYD--QHLGAVNTITFVDSNRRFVTSSD-----DKSLRVWEFGIPVVIKYISEPHMH---SMPS 477 (590)
Q Consensus 410 -~I~vwDl~t-~~~~~~~~--~h~~~V~~i~~~p~~~~l~s~s~-----Dg~I~iwdl~~~~~~~~~~~~~~~---~i~~ 477 (590)
.|++||+.+ ++...... .|...+.+++| |+|++|++++. +..|++||+.++.....+...... .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 889999998 87655433 37778999999 99999987754 567999999988776655432222 4568
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEE-EEcCCCCEEEE-EeCCC--cEEEEeCCC-Ce
Q 007757 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVMS-GDGEG--KCWFWDWKS-CK 552 (590)
Q Consensus 478 i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v-~~spdg~~l~s-gs~dg--~I~iwd~~t-~~ 552 (590)
++|+|+|+++++++.+|.+.||.+...... ..+..+ ...+..+ .|+|+|+.|+. ++.++ .++||++.. +.
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~~---~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGKA---AALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSCE---EESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCCe---eeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 999999999999999998888876522112 223333 2345555 69999998754 44455 899999864 55
Q ss_pred EEEEEecCCCCEEEEEEcCCCCCEEEEEeCC---CcEEEe
Q 007757 553 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWD---GLIKYW 589 (590)
Q Consensus 553 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D---G~I~iW 589 (590)
....+.. ...+.+++|+|++..++++++.. +.+.+|
T Consensus 417 ~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 5666665 56688999999544344444433 345555
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.3e-21 Score=221.55 Aligned_cols=277 Identities=10% Similarity=0.059 Sum_probs=196.7
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC---ceeEEEEecCCCEEEEEeCC---------CeEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK---AVRDISFCNDGTKFLTASYD---------KNIK 368 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~---~V~~l~fspdg~~l~s~s~D---------g~I~ 368 (590)
.+.+++|+|+ |+++++ +.||+|++||+ .+++....+.+|.. .|.+++|+|||++|++++.+ +.|.
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~-~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEEC-CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 3678899999 787766 78999999999 57777777777765 49999999999999999874 7889
Q ss_pred EEECCCCcEEEEccCCC----CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCce------------
Q 007757 369 YWDTETGQVIRTFSTGK----IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV------------ 432 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V------------ 432 (590)
+||+.+++. ..+.... ....+.|+|++ ..|+.++. +.|++||+.+++.......+...+
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG---~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG---QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSST---TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred EEECCCCce-EeccCCccccccccccEECCCC---CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 999999886 3333221 14456777765 34666654 899999999988777665544433
Q ss_pred ------eEEEEeCCCCEEEEEeCCC----------------------------------cEEEEECCCCcEEEEeecC--
Q 007757 433 ------NTITFVDSNRRFVTSSDDK----------------------------------SLRVWEFGIPVVIKYISEP-- 470 (590)
Q Consensus 433 ------~~i~~~p~~~~l~s~s~Dg----------------------------------~I~iwdl~~~~~~~~~~~~-- 470 (590)
.++.|+|+|++|++++.++ .|++||+.++.....+..+
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~ 249 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD 249 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence 7899999999999987553 7999999887754555432
Q ss_pred ---CCCcccEEEEcCCCCEEEEEEcC----CeEEEEEccCceeecccccccCcccccce----EEEEEcCCCCEEEE--E
Q 007757 471 ---HMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYA----CQVNFSPDGRFVMS--G 537 (590)
Q Consensus 471 ---~~~~i~~i~~sp~g~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v----~~v~~spdg~~l~s--g 537 (590)
+...+..++|+|+|++|++.+.. ..|++||+.++......... + .+.+ ..++|+|||+.|+. +
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~--~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--S--EAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--C--SSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec--c--CCEEeccCCCceEcCCCCeEEEEEe
Confidence 25678899999999988776543 57999999876543222111 1 1111 25799999997764 4
Q ss_pred eCCC------cEEEEe-CCCCe--EEEEEecCCCCEEE-EEEcCCCCCEEEEEeCC---CcEEEeC
Q 007757 538 DGEG------KCWFWD-WKSCK--VFRTLKCHEGVCIG-CEWHPLEQSKVATCGWD---GLIKYWD 590 (590)
Q Consensus 538 s~dg------~I~iwd-~~t~~--~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~D---G~I~iWD 590 (590)
..++ .|++|| ..++. +...+..+...+.. ++|+| ++..|+..+.+ +.++||+
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEE
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEE
Confidence 5666 577788 34444 14444434444554 69999 55666655544 7888884
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=5.3e-21 Score=211.40 Aligned_cols=267 Identities=11% Similarity=0.063 Sum_probs=196.5
Q ss_pred CCCeeEEEEcCCCCCEEEEEeC-CCcEEEEEccCCCeeEEEeccCC-CceeEEEEecCCCEEEEEeC---CCeEEEEECC
Q 007757 299 TKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASY---DKNIKYWDTE 373 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~ 373 (590)
..+|.+++|+|+ |+.|++++. ||+++||++ ..+.. ..+..|. ..|..++|+|+ +++++++. +....||.+.
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~-~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLY-DGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEE-ETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEE-cCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 557999999999 888988877 999999998 45554 4455555 68999999999 77777765 4555665443
Q ss_pred C---CcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 374 T---GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 374 t---~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
. +... .+..........+++++. .++++...++.+.+||+.+++.......+. .++.|+|+|++|++++.+
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~--~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGE--AVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSS--CEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEE
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCC--eEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEc
Confidence 2 3323 444444455778888764 455566666667799999987665554333 889999999999988877
Q ss_pred ----CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC--eEEEEEccCceeecccccccCcccccceEE
Q 007757 451 ----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 451 ----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 524 (590)
+.|++||+.++... .+ ..+...+..++|+|+|++|+++..++ .|++||+.++... . +.++. ..+..
T Consensus 171 ~~~~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~---~~~~~--~~~~~ 242 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D---LELPS--KDFSS 242 (582)
T ss_dssp ETTEEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E---CCCSC--SHHHH
T ss_pred CCCCeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E---ccCCC--cChhh
Confidence 78999999877655 33 34667789999999999999888888 8999999876544 2 22221 11222
Q ss_pred EE--------EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCc---EEEeC
Q 007757 525 VN--------FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL---IKYWD 590 (590)
Q Consensus 525 v~--------~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~---I~iWD 590 (590)
++ |+|||.++++++.+|.+++|++ ++... .+.+.|.+++|+ ++.++++++.+.. |.+||
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEc
Confidence 34 9999999999999999999999 66554 345678899999 4567888877744 55554
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.5e-20 Score=212.44 Aligned_cols=275 Identities=10% Similarity=0.096 Sum_probs=197.9
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC----
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET---- 374 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t---- 374 (590)
...|.+++|+|+ +.++++. ++.|++||+ .+++.. .+..+...+.+++|+|||++|+++ .++.|++||+.+
T Consensus 81 ~~~v~~~~~spd-~~~~~~~--~~~i~~~d~-~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT--QGGLVGFDM-LARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE--TTEEEEEET-TTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred ccCceeEEECCC-CeEEEEE--CCEEEEEEC-CCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 367999999999 6666553 599999999 455544 455677889999999999999985 689999999998
Q ss_pred -CcEEEEccCCCC---------------ceEEEEecCCCCCcEEEEEE--------------------------------
Q 007757 375 -GQVIRTFSTGKI---------------PYVVKLNPDDDKQNILLAGM-------------------------------- 406 (590)
Q Consensus 375 -~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~lvsg~-------------------------------- 406 (590)
++.......+.. ...+.|+|++ ..|++++
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg---~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG---SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS---SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC---CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 877665444333 3567777765 4566665
Q ss_pred -cCCcEEEEECCCCceEEEEc--ccCCceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEee-cCCCC---c
Q 007757 407 -SDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYIS-EPHMH---S 474 (590)
Q Consensus 407 -~dg~I~vwDl~t~~~~~~~~--~h~~~V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~~~~~~~~-~~~~~---~ 474 (590)
.+..|++||+.+++...... .|...+.++.|+|++++|++++.++ .|++||+.++.....+. ..... .
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 44689999999987654432 4667899999999999999987775 89999998883333332 21221 3
Q ss_pred ccEEEEcC--CCCEEEEEEcCCeEEEEEcc-CceeecccccccCcccccceEE-EEEcCCCCEEEEEeC-CC----cEEE
Q 007757 475 MPSISLHP--NTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDG-EG----KCWF 545 (590)
Q Consensus 475 i~~i~~sp--~g~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~-v~~spdg~~l~sgs~-dg----~I~i 545 (590)
+..++|+| +|++|++++.++.+.||.+. .+..+. .+..+ ...+.. ++|+|+|+.|+.++. ++ .|+.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~---~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR---QVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE---ECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE---ecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence 46789999 99999999999999999875 333222 22333 233444 799999998866554 44 6778
Q ss_pred EeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEE-eCC---CcEEEeC
Q 007757 546 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWD---GLIKYWD 590 (590)
Q Consensus 546 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~-g~D---G~I~iWD 590 (590)
||+.+++ ...+. |...+.+++|+| ++.+|+.. +.+ +.|.+||
T Consensus 387 ~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 387 IDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEE
T ss_pred EEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEE
Confidence 8887776 33333 667799999999 55556554 433 4599986
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.4e-20 Score=189.71 Aligned_cols=257 Identities=11% Similarity=0.045 Sum_probs=192.6
Q ss_pred ceeEEec-CCCC-CeeEEEEcCCCCC-EEEEEeCCCcEEEEEccCCCeeEEEecc-C----CCceeEEEEecCCCEEEEE
Q 007757 290 RLVHTWS-GHTK-GVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMG-H----SKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 290 ~~v~~l~-gH~~-~V~~l~fsp~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h----~~~V~~l~fspdg~~l~s~ 361 (590)
+++..+. ++.. .+.+++|+|+ ++ ++++++.++.|.+||+ .+++.+..+.. + ...+.+++|+|+|++|+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 99 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDL-VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY 99 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEET-TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEE
T ss_pred cEEEEEEcCCCCCCccceEEcCC-CCEEEEEeCCCCeEEEEEC-CCCCeEeeEEcCCcccccccccceEECCCCCEEEEE
Confidence 4455554 3322 4889999999 65 5566677899999999 56777666542 2 2267899999999999988
Q ss_pred e------------CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccC
Q 007757 362 S------------YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL 429 (590)
Q Consensus 362 s------------~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~ 429 (590)
+ .++.|.+||+.+++.+..+..+..+..+.+++++. .++++ ++.|++||+.+++.+..+..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~--~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 100 ESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS---KLYGL--GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS---CEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred ecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCC---EEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence 6 57999999999999988887777777788887653 35555 6899999999998887776543
Q ss_pred CceeEEEEeCCCCEEEEEeCCC------------------------cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCC
Q 007757 430 GAVNTITFVDSNRRFVTSSDDK------------------------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN 485 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~Dg------------------------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~ 485 (590)
. ...+.|+|++..++.++..+ .|.+||+.+.........++...+.+++|+|+++
T Consensus 175 ~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 175 W-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp T-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS
T ss_pred c-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCC
Confidence 1 11237888888665544332 4689999887765322234555678899999999
Q ss_pred EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC
Q 007757 486 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 486 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~ 562 (590)
+|+++ ++.|.+||+.+......... ...+.+++|+|+|++|++++.++.|.+||+.+++.+..+..+.+
T Consensus 254 ~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 254 RAFGA--YNVLESFDLEKNASIKRVPL------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEEC------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EEEEe--CCeEEEEECCCCcCcceecC------CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 99988 79999999987655433221 12355799999999999999999999999999999998876543
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=2.8e-20 Score=219.71 Aligned_cols=279 Identities=10% Similarity=0.103 Sum_probs=220.7
Q ss_pred eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 292 v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
...+.+|...|.++.|+++ .++++++.|+.+.||.+...+.....+..|. .+..++|+|+|++|+++. ++.|.+|+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d 271 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFN 271 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEEC
T ss_pred eEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEec
Confidence 3455899999999999987 6778888899999998854555666776665 467889999999998884 89999999
Q ss_pred CCCCcEEEEccCCC------------CceEEEEe-cCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC-ceeEEEE
Q 007757 372 TETGQVIRTFSTGK------------IPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-AVNTITF 437 (590)
Q Consensus 372 ~~t~~~~~~~~~~~------------~~~~~~~~-~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~-~V~~i~~ 437 (590)
+...... .+.... ....+.|+ |++ ..+++++ ++.|++|++.++.... +..|.. .+.++.|
T Consensus 272 ~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 272 PDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG 345 (1045)
T ss_dssp TTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECS
T ss_pred CCceEee-eeccCcccccccccccccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeE
Confidence 9555444 444321 45678888 765 3455555 8899999998876543 566777 8999999
Q ss_pred eCCCCEEEEEeCCCcEE-EEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCc
Q 007757 438 VDSNRRFVTSSDDKSLR-VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 516 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~-iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 516 (590)
+ +++.|++++.++.|. +|++...... .+. .+...+..++|+|+|++|++++.++.|++||+.++..... ..++
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~---~~~~ 419 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI---ERSR 419 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECS
T ss_pred c-CCCeEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe---ccCC
Confidence 9 999999999988888 9998876544 343 5677899999999999999999999999999987654322 2233
Q ss_pred ccccceEEEEEcCCCCEEEEEeCCC----------cEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 007757 517 IVAGYACQVNFSPDGRFVMSGDGEG----------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~dg----------~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 586 (590)
...+..++|||||++|++++.++ .|++||+.+++ +..+..|...+.+++|+| ++.+|++++.++..
T Consensus 420 --~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 420 --EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLD 495 (1045)
T ss_dssp --SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCC
T ss_pred --CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCC
Confidence 34566799999999998887644 89999999988 667777888899999999 67788899888877
Q ss_pred EEeC
Q 007757 587 KYWD 590 (590)
Q Consensus 587 ~iWD 590 (590)
.+|+
T Consensus 496 ~~~~ 499 (1045)
T 1k32_A 496 PSPD 499 (1045)
T ss_dssp CEEC
T ss_pred cCcc
Confidence 7774
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=1.1e-20 Score=213.60 Aligned_cols=271 Identities=9% Similarity=0.098 Sum_probs=192.5
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeE-EEeccCC-----------------CceeEEEEecCCCEEEEEeC
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHS-----------------KAVRDISFCNDGTKFLTASY 363 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~-----------------~~V~~l~fspdg~~l~s~s~ 363 (590)
+..+.|. +..+++++.|+ | +||+ .+++.+ ..+..|. ..|.+++|+|+ ..++.+.
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~-~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~- 99 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNK-ANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT- 99 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEEC-CCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-
Confidence 5557788 35667777788 8 9999 566552 3343333 56999999999 6666554
Q ss_pred CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-----CceEEEEcccCCc-------
Q 007757 364 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEITQEYDQHLGA------- 431 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-----~~~~~~~~~h~~~------- 431 (590)
++.|++||+.+++.............+.|+|++ ..|++ ..++.|++||+.+ ++.......+...
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG---~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDTNEETASLDFSPVG---DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TTEEEEEETTTTEEEEEECCTTCCTTCEECTTS---SEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred CCEEEEEECCCCceEEccCCcccccCCcCCCCC---CEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 599999999999877666555556677888865 35665 4689999999998 7766544444333
Q ss_pred -------eeEEEEeCCCCEEEEEe---------------------------------CCCcEEEEECCCCcEEEEeec-C
Q 007757 432 -------VNTITFVDSNRRFVTSS---------------------------------DDKSLRVWEFGIPVVIKYISE-P 470 (590)
Q Consensus 432 -------V~~i~~~p~~~~l~s~s---------------------------------~Dg~I~iwdl~~~~~~~~~~~-~ 470 (590)
+.++.|+|+|++|++++ .+..|++||+.++........ .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 48999999999999987 456799999988765443322 3
Q ss_pred CCCcccEEEEcCCCCEEEEEEcCC-----eEEEEEccCceeecccccccCcccccceEEEEEcC--CCCEEEEEeCCCcE
Q 007757 471 HMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKC 543 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--dg~~l~sgs~dg~I 543 (590)
+...+.+++|+|+|++|++++.++ .|.+||+.++.................+..++|+| ||++|++++.+|.+
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 556789999999999999988775 89999998763222221111110011234579999 99999999999999
Q ss_pred EEEeCC-CCeEEEEEecCCCCEEE-EEEcCCCCCEEEEEeCCC
Q 007757 544 WFWDWK-SCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 544 ~iwd~~-t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~DG 584 (590)
+||.+. ++..+..+..|...+.+ ++|+|++..++++++.++
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS 378 (706)
T ss_dssp EEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred EEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence 999876 67777888888877877 799995444445555555
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=3.1e-19 Score=183.45 Aligned_cols=263 Identities=9% Similarity=0.125 Sum_probs=179.3
Q ss_pred CCcEEEEEccC-CCeeEE-EeccCCCceeEEEEecCCCEEEEEeC---CCeEEEEECCCCcE--EEE-ccCCCCceEEEE
Q 007757 321 DTKVKIWDVVN-SGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQV--IRT-FSTGKIPYVVKL 392 (590)
Q Consensus 321 Dg~I~iWd~~~-~~~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~---Dg~I~vWd~~t~~~--~~~-~~~~~~~~~~~~ 392 (590)
++.|.+|.+.. +++... ....+...+..++|+|+|+ |++++. ++.|.+|++.++.. +.. ......+..+++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 56688888743 344332 3345667788999999999 665554 68999999987763 333 223556677888
Q ss_pred ecCCCCCcEEEEEE-cCCcEEEEECCC-Cc--eEEEEcc---------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007757 393 NPDDDKQNILLAGM-SDKKIVQWDMNT-KE--ITQEYDQ---------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 393 ~~~~~~~~~lvsg~-~dg~I~vwDl~t-~~--~~~~~~~---------h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
++++ .+|++++ .++.|.+|++.. +. .+..+.. +...+.+++|+|+++.+++...++.|++|++.
T Consensus 94 spdg---~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 94 DEAR---QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp ETTT---TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred CCCC---CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence 8865 4555555 789999999963 32 3333321 12248899999999966777778899999998
Q ss_pred -CCcEE--EEeecCCCCcccEEEEcCCCCEEEEE-EcCCeEEEEEccC--ceeecccccccCcc----cccceEEEEEcC
Q 007757 460 -IPVVI--KYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRE--RFQLNKKKRFAGHI----VAGYACQVNFSP 529 (590)
Q Consensus 460 -~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~s~-s~dg~I~iwd~~~--~~~~~~~~~~~~~~----~~~~v~~v~~sp 529 (590)
.+... ..+.......+..++|+|+|++|+++ ..++.|.+|++.. +. +.....+.... ....+..++|+|
T Consensus 171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-FTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-EEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-eEEeeeeeecCCCCCCCCcceeEEECC
Confidence 34322 22222334467789999999976665 5678999999874 22 11111111111 113477899999
Q ss_pred CCCEEE-EEeCCCcEEEEeCC---CCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC-CCcEEEe
Q 007757 530 DGRFVM-SGDGEGKCWFWDWK---SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-DGLIKYW 589 (590)
Q Consensus 530 dg~~l~-sgs~dg~I~iwd~~---t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~-DG~I~iW 589 (590)
||++|+ +...++.|.+|++. ..+.+..+..+...+.+++|+| ++.+|++++. ++.|.+|
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEE
Confidence 999874 55678999999997 3356667777777789999999 5666666665 5899999
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=1.9e-19 Score=184.66 Aligned_cols=243 Identities=12% Similarity=0.150 Sum_probs=192.8
Q ss_pred CCCceeEEEEecCCCEEEEEeC-------CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEE
Q 007757 342 HSKAVRDISFCNDGTKFLTASY-------DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~-------Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vw 414 (590)
....+..++|+|++++|++++. ++.|.+||..+++.+..+..+..+..+.+.+++. .+++++..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQ--TLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTT--EEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCC--EEEEEecCCCEEEEE
Confidence 3456889999999998888874 5689999999999999888777777888888653 466677778999999
Q ss_pred ECCCCceEEEEcccCCc---------eeEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC
Q 007757 415 DMNTKEITQEYDQHLGA---------VNTITFVDSNRRFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 415 Dl~t~~~~~~~~~h~~~---------V~~i~~~p~~~~l~s~s--~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
|+.+++.+..+..+... +.++.|+|+++++++++ .++.|.+||+.+...+..+. .+...+.+++|+|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCC
Confidence 99999988888665432 78899999999877776 47889999999988887764 24455889999999
Q ss_pred CCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCCC
Q 007757 484 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHEG 562 (590)
Q Consensus 484 g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iwd~~t~~~~~~l~~h~~ 562 (590)
+++|++++.++.|.+||+.+............ .....+..++|+|+|++|++++. ++.|.+||..+++.+..+..+..
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLDD-GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCCS-SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence 99999999999999999988765543332111 11345677999999998777665 59999999999999988886543
Q ss_pred CEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 563 VCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+++|+|++..++++...++.|.+||
T Consensus 275 --~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 275 --LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp --CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred --ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 57999995444556666799999997
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=5.1e-20 Score=208.45 Aligned_cols=285 Identities=12% Similarity=0.047 Sum_probs=194.3
Q ss_pred cceeEEecCCCC---CeeEEEEcCCCCCEEEEEeCC---------CcEEEEEccCCCeeEEEec---cCCCceeEEEEec
Q 007757 289 KRLVHTWSGHTK---GVSAIRFFPKYGHLILSAGMD---------TKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCN 353 (590)
Q Consensus 289 ~~~v~~l~gH~~---~V~~l~fsp~~g~~L~sgs~D---------g~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fsp 353 (590)
.++...+.+|.. .|.+++|+|+ |++|++++.+ +.|.+||+ .+++. ..+. +|...+..++|+|
T Consensus 47 g~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~-~~~~~-~~l~~~~~~~~~~~~~~~SP 123 (723)
T 1xfd_A 47 NTSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKI-PHGDP-QSLDPPEVSNAKLQYAGWGP 123 (723)
T ss_dssp CCCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEES-SSCCC-EECCCTTCCSCCCSBCCBCS
T ss_pred CcEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEEC-CCCce-EeccCCccccccccccEECC
Confidence 344566677765 4999999999 8999998774 77889999 45554 3333 4555699999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC-c------------------eEEEEecCCCCCcEEEEEEcCC-----
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-P------------------YVVKLNPDDDKQNILLAGMSDK----- 409 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~lvsg~~dg----- 409 (590)
||++|++++. +.|++||+.+++.......+.. . ..+.|+|++ ..|++++.++
T Consensus 124 dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg---~~la~~~~~~~~~~~ 199 (723)
T 1xfd_A 124 KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG---TRLAYAAINDSRVPI 199 (723)
T ss_dssp STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS---SEEEEEEEECTTSCE
T ss_pred CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC---CEEEEEEECCCccce
Confidence 9999999986 8999999999887765544321 1 467777765 4566665432
Q ss_pred -----------------------------cEEEEECCCCceEEEEccc------CCceeEEEEeCCCCEEEEEeC----C
Q 007757 410 -----------------------------KIVQWDMNTKEITQEYDQH------LGAVNTITFVDSNRRFVTSSD----D 450 (590)
Q Consensus 410 -----------------------------~I~vwDl~t~~~~~~~~~h------~~~V~~i~~~p~~~~l~s~s~----D 450 (590)
.|++||+.+++....+..+ ...+.++.|+|+|++|++.+. +
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred EEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 7999999998865666544 567899999999998877653 3
Q ss_pred CcEEEEECCCCcEEEEeecCCCCcc----cEEEEcCCCCEEEEE--EcCC------eEEEEE-ccCceeecccccccCcc
Q 007757 451 KSLRVWEFGIPVVIKYISEPHMHSM----PSISLHPNTNWLAAQ--SLDN------QILIYS-TRERFQLNKKKRFAGHI 517 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~~~~~i----~~i~~sp~g~~l~s~--s~dg------~I~iwd-~~~~~~~~~~~~~~~~~ 517 (590)
..|++||+.++.....+...+...+ ..++|+|+|+.|+.. ..++ .|.+|| ...+.. .....+...
T Consensus 280 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~- 357 (723)
T 1xfd_A 280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-DNIQSITSG- 357 (723)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-CCCCBSCCS-
T ss_pred EEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-cceeEeecC-
Confidence 5799999988876655543333333 378999999977754 4566 466676 333220 001122211
Q ss_pred cccceE-EEEEcCCCCEEEEEeCC---CcEEEEeCCCC--eEEEEEec---CCCCEEEEEEcCCCCCEEEEEeCC
Q 007757 518 VAGYAC-QVNFSPDGRFVMSGDGE---GKCWFWDWKSC--KVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 518 ~~~~v~-~v~~spdg~~l~sgs~d---g~I~iwd~~t~--~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~D 583 (590)
...+. .++|+|||++|+..+.+ +.++||++... .....+.. |...+..++|+|++..++++++..
T Consensus 358 -~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 358 -DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp -SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred -CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 12223 36899999999766554 78999988643 23333443 566788999999544444444433
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=2.1e-19 Score=183.80 Aligned_cols=260 Identities=9% Similarity=0.062 Sum_probs=185.7
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCC-CceeEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEc
Q 007757 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 304 ~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~ 381 (590)
.++++++ +.++++++.++.|++||+ .+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+
T Consensus 4 g~~~~~~-~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAG-HEYMIVTNYPNNLHVVDV-ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTT-CEEEEEEETTTEEEEEET-TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCC-CEEEEEeCCCCeEEEEEC-CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 3456776 889999999999999999 5778777776543 2578999999998665 5556899999999999988877
Q ss_pred cCCCC-------ceEEEEecCCCCCcEEEEEEcC------------CcEEEEECCCCc---eEEEEcccCCceeEEEEeC
Q 007757 382 STGKI-------PYVVKLNPDDDKQNILLAGMSD------------KKIVQWDMNTKE---ITQEYDQHLGAVNTITFVD 439 (590)
Q Consensus 382 ~~~~~-------~~~~~~~~~~~~~~~lvsg~~d------------g~I~vwDl~t~~---~~~~~~~h~~~V~~i~~~p 439 (590)
..... +..+.+++++ ..+++++.+ +.|.+||+.+++ .+..+.. ...+.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~ 157 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDG---KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD 157 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECT
T ss_pred EcccccccccccccceEECCCC---CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECC
Confidence 65442 5667777754 456666654 899999998853 3344443 34688999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCC-----------------------cccEEEEcCCCC-----------
Q 007757 440 SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-----------------------SMPSISLHPNTN----------- 485 (590)
Q Consensus 440 ~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-----------------------~i~~i~~sp~g~----------- 485 (590)
+++ +++++. .|++||+.+...+..+...... ....+++++++.
T Consensus 158 dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 555543 4999999988877766432100 223355554431
Q ss_pred EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCE
Q 007757 486 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC 564 (590)
Q Consensus 486 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V 564 (590)
++......+.+.+|++.. ....+..++|+| +|++|+++ ++.|++||+.+++.+..+..+. .+
T Consensus 235 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~ 297 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFAD--------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TY 297 (349)
T ss_dssp EEEEETTTCCEEEEEEEE--------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CC
T ss_pred EEEEeccCCcEEeccccc--------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-Cc
Confidence 111222334455554421 123466799999 99999988 8899999999999988887543 46
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 565 IGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+++|+| ++.+|++++.++.|++||
T Consensus 298 ~~~~~s~-dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 298 YCVAFDK-KGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp CEEEECS-SSSCEEEESBSSEEEEEE
T ss_pred cceEECC-CCCEEEEecCCCeEEEEe
Confidence 7899999 556677788899999997
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.2e-19 Score=180.22 Aligned_cols=238 Identities=13% Similarity=0.128 Sum_probs=174.7
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC-CeeEEEeccC-CCceeEEEEecCCCEEEEEeC--CCe--
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-GKCMRTYMGH-SKAVRDISFCNDGTKFLTASY--DKN-- 366 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~~~h-~~~V~~l~fspdg~~l~s~s~--Dg~-- 366 (590)
..+..|...|.+++|+|+ +++|++++ ++.|++||+ .. ++....+..| ...|.+++|+|++++|++++. ++.
T Consensus 35 ~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSL-AGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSA 111 (297)
T ss_dssp EEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEES-SSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred eeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeC-CCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence 355678999999999999 88998887 789999999 45 6666666565 478999999999999999983 344
Q ss_pred EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-CceEEEEcccCCceeEEEEeCCCCEEE
Q 007757 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-~~~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
|.+|++.++. ...+........+.|++++ ..+++++..++.+.+|++.. ......+..+...+.++.|+|++++|+
T Consensus 112 l~~~~~~~~~-~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 112 IYLLPSTGGT-PRLMTKNLPSYWHGWSPDG--KSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp EEEEETTCCC-CEECCSSSSEEEEEECTTS--SEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEE
T ss_pred EEEEECCCCc-eEEeecCCCccceEECCCC--CEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEE
Confidence 4445555555 3444444455566777654 24555888899899988532 233455667888999999999999888
Q ss_pred EEe-CCCcEEEEECC-CCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----------CeEEEEEccCceeeccccc
Q 007757 446 TSS-DDKSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----------NQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 446 s~s-~Dg~I~iwdl~-~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-----------g~I~iwd~~~~~~~~~~~~ 512 (590)
+++ .++.++||++. ....+..+. .+...+.+++|+|++++|++++.+ +.|.+||+.++.... ...
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~ 266 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET-LFD 266 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE-EEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee-eec
Confidence 766 58999999986 344444443 466788899999999999988876 569999998754321 122
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEeCC
Q 007757 513 FAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
+.++ ...+..++|+|+|++|++++.+
T Consensus 267 ~~~~--~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 267 LFGG--QGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEES--TTTSCSCCBCTTSSEEEEEEEC
T ss_pred cCCC--CcccccceECCCCCEEEEEEec
Confidence 2223 3456678999999999887755
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=1.7e-19 Score=212.93 Aligned_cols=275 Identities=12% Similarity=0.006 Sum_probs=210.8
Q ss_pred CCCCeeEEEEc-CCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC-ceeEEEEecCCCEEEEEeCCCeEE-EEECCC
Q 007757 298 HTKGVSAIRFF-PKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK-AVRDISFCNDGTKFLTASYDKNIK-YWDTET 374 (590)
Q Consensus 298 H~~~V~~l~fs-p~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~-~V~~l~fspdg~~l~s~s~Dg~I~-vWd~~t 374 (590)
|...|.+++|+ |+ |++|++++ ++.|.+|++ ..+. ...+..|.. .+.+++|+ +|+.|++++.++.|. +|++.+
T Consensus 294 ~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 294 SIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDV-SGTY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp ECGGGGEEEEEECG-GGCEEEEE-TTEEEEECT-TSSB-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred cccccceeeecCCC-CCEEEEEE-cCEEEEEcC-CCCc-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 55679999999 99 88888777 789999998 3444 445677877 89999999 999999999988899 999998
Q ss_pred CcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCC---
Q 007757 375 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK--- 451 (590)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg--- 451 (590)
++.............+.|+|++ ..|++++.++.|++||+.+++....+..|.+.+.+++|+|+|++|++++.++
T Consensus 369 ~~~~~l~~~~~~~~~~~~SpDG---~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 369 GKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp CCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred CCceEecCCccceeeeEECCCC---CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 8765544222445567777654 6788999999999999999998888878999999999999999999887654
Q ss_pred -------cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee-------e----------
Q 007757 452 -------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ-------L---------- 507 (590)
Q Consensus 452 -------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~-------~---------- 507 (590)
.|++||+.++. +..+. .+...+..++|+|+|++|++++.++...+|+...... +
T Consensus 446 ~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 523 (1045)
T ss_dssp TCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred ccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCC
Confidence 89999998876 44443 4667788899999999999999887777776432111 0
Q ss_pred -----------------------cccccccCcccccceEEEEEcCCCCEEEE-------------EeCCCcEEEEeCCCC
Q 007757 508 -----------------------NKKKRFAGHIVAGYACQVNFSPDGRFVMS-------------GDGEGKCWFWDWKSC 551 (590)
Q Consensus 508 -----------------------~~~~~~~~~~~~~~v~~v~~spdg~~l~s-------------gs~dg~I~iwd~~t~ 551 (590)
.....+.. ..+.+..++++|||.++++ .+....|++||+.++
T Consensus 524 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~--~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 524 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CccccCcCccccccccccccCHhHceEEcCC--CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 00001111 1355778999999987775 123557899999988
Q ss_pred eEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 552 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+..... ..+.+++|+| ++.+|++++.| .|++||
T Consensus 602 ~~~~l~----~~v~~~~~S~-DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 602 KVTEVK----NNLTDLRLSA-DRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp CEEEEE----EEEEEEEECT-TSCEEEEEETT-SCEEEE
T ss_pred cEEEee----cCcceEEECC-CCCEEEEEcCC-cEEEEe
Confidence 764333 5578999999 67788888766 799986
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=2e-19 Score=187.50 Aligned_cols=293 Identities=11% Similarity=0.010 Sum_probs=196.9
Q ss_pred ceeEEecCCCCCeeE-----EEEcCCCCCEEEEEeC-CCc--EEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEE
Q 007757 290 RLVHTWSGHTKGVSA-----IRFFPKYGHLILSAGM-DTK--VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 361 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~-----l~fsp~~g~~L~sgs~-Dg~--I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~ 361 (590)
..+..+..|...+.. .+|+|+ |+.|+.++. ++. |.+||+ ..++......++...+..+.|+|+|+.|+.+
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDL-NTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeC-CCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 455677777766666 889999 888887776 674 778888 5667666666677667788999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEccCCCCce-EEEEecCCCCCcEEEEE----------------------EcCCcEEEEECCC
Q 007757 362 SYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAG----------------------MSDKKIVQWDMNT 418 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvsg----------------------~~dg~I~vwDl~t 418 (590)
+.++.|.+||+.+++....+....... ...+....+ +.+++.. ..+..|++||+.+
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSD-CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECCC-CCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 999999999999998776655443321 223322222 2344432 2347899999999
Q ss_pred CceEEEEcccCCceeEEEEeC-CCCEEEEEeCC------CcEEEEECCCCcEEEEeecCCC-CcccEEEEcCCCCEEEEE
Q 007757 419 KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~D------g~I~iwdl~~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~s~ 490 (590)
++.... ..+...+..+.|+| +++.|+.++.+ ..|.++|+..... ..+..... ..+..++|+|+|+.|+..
T Consensus 178 g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 178 GESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp CCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEE
Confidence 875544 35667789999999 99998887763 3788888765543 33332222 357788999999977665
Q ss_pred EcC-C----eEEEEEccCceeecccccccCcccc-cceEEEEEcCCCCEEEEE---------eCCCcEEEEeCCCCeEEE
Q 007757 491 SLD-N----QILIYSTRERFQLNKKKRFAGHIVA-GYACQVNFSPDGRFVMSG---------DGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 491 s~d-g----~I~iwd~~~~~~~~~~~~~~~~~~~-~~v~~v~~spdg~~l~sg---------s~dg~I~iwd~~t~~~~~ 555 (590)
+.. + .|++||+.++.... +..+.++... .....+.|+|||+.|+.. ..+..|++||+.+++..
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~- 333 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH- 333 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-
T ss_pred ecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-
Confidence 432 2 39999998765321 2222221000 001113799999988754 45678999999988764
Q ss_pred EEecCCC-----------CEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 556 TLKCHEG-----------VCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 556 ~l~~h~~-----------~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.+..|.. .+.+++|+|++..+++++..+|...||
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 334 RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 4555555 578899999544444455568887777
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=3.3e-18 Score=176.89 Aligned_cols=270 Identities=7% Similarity=0.093 Sum_probs=178.4
Q ss_pred CCEEEEEe----CCCcEEEEEccC-CCeeEEEeccCCCceeEEEEecCCCEEEEEeCC----CeEEEEECCC--CcE--E
Q 007757 312 GHLILSAG----MDTKVKIWDVVN-SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTET--GQV--I 378 (590)
Q Consensus 312 g~~L~sgs----~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D----g~I~vWd~~t--~~~--~ 378 (590)
..+++.|+ .++.|.+|.+.. .+........+...+..++|+|+|++|++++.+ +.|.+|++.. +.. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 356899998742 233322221277888999999999999999886 7999998865 443 2
Q ss_pred EEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE----EEc--c--------cCCceeEEEEeCCCCE
Q 007757 379 RTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ----EYD--Q--------HLGAVNTITFVDSNRR 443 (590)
Q Consensus 379 ~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~----~~~--~--------h~~~V~~i~~~p~~~~ 443 (590)
.... ....+..+.+ + ...++++...++.|.+|++.....+. .+. + +...+.+++|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~--d--g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--N--GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEECSSSCEEEEEE--C--SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred eEeccCCCCcEEEEE--C--CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3332 2233444444 2 22445555578999999997543221 111 1 1234578999999997
Q ss_pred EEEEe-CCCcEEEEECCCCcE------E------EEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceee--
Q 007757 444 FVTSS-DDKSLRVWEFGIPVV------I------KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL-- 507 (590)
Q Consensus 444 l~s~s-~Dg~I~iwdl~~~~~------~------~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~-- 507 (590)
|++++ .++.|.+|++..... + ..........+..++|+|+|++|++++ .++.|.+|++.++...
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 66555 588999999875431 1 223334555678999999999888877 6899999999765321
Q ss_pred cccccccCcccccceEEEEEcCCCCEEEEEeC--CCcEEEEeCC--CCe--EEEEEecCCCCEEEEEEcCCCCCEEEEEe
Q 007757 508 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWK--SCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 508 ~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~--dg~I~iwd~~--t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
........+ ......++|+|||++|++++. ++.|.+|++. +++ .+..+.. ...+.+++|+| ++++|++++
T Consensus 249 ~~~~~~~~~--~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~ 324 (361)
T 3scy_A 249 QTVAADTVN--AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVAC 324 (361)
T ss_dssp EEEESCSSC--CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEE
T ss_pred EEEecCCCC--CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEE
Confidence 111111111 233467999999999977665 4899999985 444 4555554 45678999999 566666666
Q ss_pred -CCCcEEEe
Q 007757 582 -WDGLIKYW 589 (590)
Q Consensus 582 -~DG~I~iW 589 (590)
.++.|.+|
T Consensus 325 ~~~~~v~v~ 333 (361)
T 3scy_A 325 RDTNVIQIF 333 (361)
T ss_dssp TTTTEEEEE
T ss_pred CCCCCEEEE
Confidence 67899996
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=2.4e-18 Score=176.80 Aligned_cols=253 Identities=9% Similarity=0.160 Sum_probs=173.1
Q ss_pred cCCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEEccCCCe--eEEEeccCCCceeEEEEecCCCEEEEEe-CCCeEEEE
Q 007757 296 SGHTKGVSAIRFFPKYGHLILSAGM--DTKVKIWDVVNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYW 370 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~~L~sgs~--Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vW 370 (590)
..+...+..++|+|+ +++++++.. ++.|.+|++ ..+. .+..+..+...+..++|+|+|++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~-~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQI-DGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEE-ETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEe-cCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 345677889999999 674444432 689999999 4443 4455566788899999999999999888 67999999
Q ss_pred ECC-CC--cEEEEccCC----------CCceEEEEecCCCCCcEEEEEEcCCcEEEEECC-CCceEE--EEccc-CCcee
Q 007757 371 DTE-TG--QVIRTFSTG----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQ--EYDQH-LGAVN 433 (590)
Q Consensus 371 d~~-t~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~-t~~~~~--~~~~h-~~~V~ 433 (590)
++. ++ ..+..+... ..+..+.+.+++ .+++++..++.|++|++. ++++.. .+..+ ...+.
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg---~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN---RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS---CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC---cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 996 33 233333221 124456676654 377777778999999998 554332 22222 33678
Q ss_pred EEEEeCCCCEEEE-EeCCCcEEEEECCC--CcE--EEEeecCC-----CCcccEEEEcCCCCEEEE-EEcCCeEEEEEcc
Q 007757 434 TITFVDSNRRFVT-SSDDKSLRVWEFGI--PVV--IKYISEPH-----MHSMPSISLHPNTNWLAA-QSLDNQILIYSTR 502 (590)
Q Consensus 434 ~i~~~p~~~~l~s-~s~Dg~I~iwdl~~--~~~--~~~~~~~~-----~~~i~~i~~sp~g~~l~s-~s~dg~I~iwd~~ 502 (590)
.++|+|+++++++ +..++.|.+|++.. +.. +..+.... ...+..++|+|+|++|++ ...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999996655 56788999999874 332 22222111 135778999999998754 5568999999986
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEeC-CCcEEEE--eCCCCeEEE
Q 007757 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFW--DWKSCKVFR 555 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg~I~iw--d~~t~~~~~ 555 (590)
....+.....+..+ ...+..++|+|||++|++++. ++.|.+| |..++++..
T Consensus 271 ~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 271 ADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp GGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 33222222333222 234567999999999888875 4899999 556777653
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=8.9e-18 Score=173.61 Aligned_cols=264 Identities=11% Similarity=0.120 Sum_probs=179.7
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCC----CcEEEEEccCC-Ce--eEEEeccCCCceeEEEEecCCCEEEEEe-CCCeEEE
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMD----TKVKIWDVVNS-GK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKY 369 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~D----g~I~iWd~~~~-~~--~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~v 369 (590)
|...+..++|+|+ +++|++++.+ +.|.+|++... +. .+.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 7788899999999 8989888876 79999998543 33 33344445667778888 888888777 4789999
Q ss_pred EECCCCcEEEEc------cC---------CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc-------eE-----
Q 007757 370 WDTETGQVIRTF------ST---------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-------IT----- 422 (590)
Q Consensus 370 Wd~~t~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~-------~~----- 422 (590)
|++.....+..+ .. ...+..+.++|++. .+++++..++.|.+|++.... +.
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK--YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC--EEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 999754332211 11 01124567776542 455666668999999887543 21
Q ss_pred -EEEcccCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCcE--EEEeec--CCCCcccEEEEcCCCCEEEEEEcC--C
Q 007757 423 -QEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVV--IKYISE--PHMHSMPSISLHPNTNWLAAQSLD--N 494 (590)
Q Consensus 423 -~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~~--~~~~~~--~~~~~i~~i~~sp~g~~l~s~s~d--g 494 (590)
.....+...+.+++|+|+++++++++ .++.|.+|++..+.. +..+.. .+......++|+|+|++|+++..+ +
T Consensus 203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 12233455678999999999887776 689999999986543 222221 223446799999999999777765 8
Q ss_pred eEEEEEcc--CceeecccccccCcccccceEEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCeEEEEE-ecCCCCEEEEE
Q 007757 495 QILIYSTR--ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFW--DWKSCKVFRTL-KCHEGVCIGCE 568 (590)
Q Consensus 495 ~I~iwd~~--~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iw--d~~t~~~~~~l-~~h~~~V~~v~ 568 (590)
.|.+|++. ++. +.....+.. ...+..++|+|+|++|++++ .++.|.+| |..++++.... ..+...+.|+.
T Consensus 283 ~i~v~~~~~~~g~-~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~ 358 (361)
T 3scy_A 283 GVAIFKVDETNGT-LTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK 358 (361)
T ss_dssp EEEEEEECTTTCC-EEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred EEEEEEEcCCCCc-EEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence 99999986 222 111222221 23455799999999988887 67889996 55577765443 22445788998
Q ss_pred Ec
Q 007757 569 WH 570 (590)
Q Consensus 569 ~s 570 (590)
|.
T Consensus 359 ~~ 360 (361)
T 3scy_A 359 FV 360 (361)
T ss_dssp EE
T ss_pred Ec
Confidence 86
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=5.3e-18 Score=176.12 Aligned_cols=274 Identities=11% Similarity=0.125 Sum_probs=180.2
Q ss_pred EEEEEeCC--CcEEEEEccC-CCeeE--EEec-cCCCceeEEEEecCCCEEEEEeCCCeEEEEECC-CCcEEEEccC--C
Q 007757 314 LILSAGMD--TKVKIWDVVN-SGKCM--RTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFST--G 384 (590)
Q Consensus 314 ~L~sgs~D--g~I~iWd~~~-~~~~~--~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~-t~~~~~~~~~--~ 384 (590)
.|+.|+.. +.|.+|++.. ++.+. .... .....+..++|+|+|++|++++.+ .|.+|++. +++....... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45566653 4688877632 33332 1111 234568899999999999999988 99999997 7776543321 1
Q ss_pred CCceEEEEecCCCCCc-EEEEEE-------------cCCcEEEEECC-CCceEEEEc----ccCCceeEEEEeCCCCEEE
Q 007757 385 KIPYVVKLNPDDDKQN-ILLAGM-------------SDKKIVQWDMN-TKEITQEYD----QHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~-~lvsg~-------------~dg~I~vwDl~-t~~~~~~~~----~h~~~V~~i~~~p~~~~l~ 445 (590)
..+..+.+++++ .. +++++. .++.+.+|++. .+++...+. .+...+.++.|+|+|++|+
T Consensus 83 g~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 83 GHPRANDADTNT--RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp SSGGGGCTTSCC--EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCccEEECCCC--CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 223334444433 22 344442 68999999997 466544443 2456799999999999888
Q ss_pred EEeC-CCcEEEEECC-CCcEE--EEeecC-CCCcccEEEEcCCCCEEEEEEc-CCeEEEEEcc--Cceee---ccccccc
Q 007757 446 TSSD-DKSLRVWEFG-IPVVI--KYISEP-HMHSMPSISLHPNTNWLAAQSL-DNQILIYSTR--ERFQL---NKKKRFA 514 (590)
Q Consensus 446 s~s~-Dg~I~iwdl~-~~~~~--~~~~~~-~~~~i~~i~~sp~g~~l~s~s~-dg~I~iwd~~--~~~~~---~~~~~~~ 514 (590)
++.. ++.|++|++. ++... ..+..+ +...+..++|+|+|++|++++. ++.|.+|++. ++... .....+.
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 7654 6799999998 55442 223222 3556889999999999988775 6899999875 23221 1111221
Q ss_pred Cccc--cc------ceEEEE-EcCCCCEEEEEeCCC------cEEEEeCC-CCeEEE---EEecCCCCEEEEEEcCC--C
Q 007757 515 GHIV--AG------YACQVN-FSPDGRFVMSGDGEG------KCWFWDWK-SCKVFR---TLKCHEGVCIGCEWHPL--E 573 (590)
Q Consensus 515 ~~~~--~~------~v~~v~-~spdg~~l~sgs~dg------~I~iwd~~-t~~~~~---~l~~h~~~V~~v~~sp~--~ 573 (590)
.... .. .+..++ |+|||++|++++.+. .|.+|++. ++++.. .+..+...+..++|+|. +
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 1100 11 467899 999999988766432 89999996 676543 23345555678899994 4
Q ss_pred CCEEEEEeC-CCcEEEeC
Q 007757 574 QSKVATCGW-DGLIKYWD 590 (590)
Q Consensus 574 ~~~l~s~g~-DG~I~iWD 590 (590)
+.+|++++. ++.|.||+
T Consensus 321 g~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TTEEEEECSSSCEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEE
Confidence 667887776 48999995
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=1.5e-18 Score=196.48 Aligned_cols=276 Identities=8% Similarity=0.032 Sum_probs=188.5
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC---ceeEEEEecCCCEEEEEeC---------CCeEEEEE
Q 007757 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK---AVRDISFCNDGTKFLTASY---------DKNIKYWD 371 (590)
Q Consensus 304 ~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~---~V~~l~fspdg~~l~s~s~---------Dg~I~vWd 371 (590)
+++|+|+ +.+++ .+.|+.|++||+ ..+++...+.+|.. .|.+++|||||++|++++. ++.|++||
T Consensus 20 ~~~~s~d-g~~~~-~~~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISG-QEYLH-QSADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSS-SEEEE-ECTTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCC-CeEEE-EcCCCCEEEEEc-CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 6789999 65555 456999999999 57777666665544 4999999999999998876 78999999
Q ss_pred CCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-cccCCce-----------------e
Q 007757 372 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAV-----------------N 433 (590)
Q Consensus 372 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-~~h~~~V-----------------~ 433 (590)
+.+++.+...........+.|+|++. .|+.+ .++.|++||+.+++..+.. .++...| .
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~---~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGS---KLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCCccccceecCcccccceECCCCC---EEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 99998732222234456788888764 45555 4789999999988765432 2222222 5
Q ss_pred EEEEeCCCCEEEEEeCCC----------------------------------cEEEEECCCCcEE--EEee-----cCCC
Q 007757 434 TITFVDSNRRFVTSSDDK----------------------------------SLRVWEFGIPVVI--KYIS-----EPHM 472 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg----------------------------------~I~iwdl~~~~~~--~~~~-----~~~~ 472 (590)
++.|+|+|++|++++.|. .|++||+.++... ..+. ..+.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 899999999999987652 7889999877642 1221 1366
Q ss_pred CcccEEEEcCCCCEEEEEEcC----CeEEEEE----ccCceeecccc-cccCcccccceE-----EEEEcCCCCEEEE--
Q 007757 473 HSMPSISLHPNTNWLAAQSLD----NQILIYS----TRERFQLNKKK-RFAGHIVAGYAC-----QVNFSPDGRFVMS-- 536 (590)
Q Consensus 473 ~~i~~i~~sp~g~~l~s~s~d----g~I~iwd----~~~~~~~~~~~-~~~~~~~~~~v~-----~v~~spdg~~l~s-- 536 (590)
..+..++|+|+++++++.... ..|.+|| +.++....... ...++ ...+. .+.|+|||+.|+.
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS--SSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC--CceEccccCCccEECCCCCeEEEEE
Confidence 678999999998777765433 2488899 66654332221 00122 22232 5789999996554
Q ss_pred EeCCC--cEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC----CCcEEEeC
Q 007757 537 GDGEG--KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW----DGLIKYWD 590 (590)
Q Consensus 537 gs~dg--~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~----DG~I~iWD 590 (590)
+..+| .|++||+.+++ ...+..+...+..+.++ ++..+++++.. ++.++||.
T Consensus 331 ~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred EccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44555 57788887776 44555566667777777 45555555544 47888883
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=4.1e-17 Score=166.67 Aligned_cols=270 Identities=12% Similarity=0.098 Sum_probs=183.0
Q ss_pred cCCcceeecccccccccceeecCCCccccCCCCccCCcceeEEecCCC-CCeeEEEEcCCCCCE-EEEEeCCCcEEEEEc
Q 007757 252 VEDKSTFHGKEETDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHT-KGVSAIRFFPKYGHL-ILSAGMDTKVKIWDV 329 (590)
Q Consensus 252 ~~~~s~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~v~~l~gH~-~~V~~l~fsp~~g~~-L~sgs~Dg~I~iWd~ 329 (590)
+.....+......+.+.+.|-. ...+++.++..+. ..+..++|+|+ +++ ++++..++.|.+||+
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~-------------~~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDV-------------ASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEET-------------TTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEET
T ss_pred ccCCCEEEEEeCCCCeEEEEEC-------------CCCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeC
Confidence 3344445555555666665522 1234555665443 35889999999 664 556667899999999
Q ss_pred cCCCeeEEEeccCC------CceeEEEEecCCCEEEEEeCC------------CeEEEEECCCCcE---EEEccCCCCce
Q 007757 330 VNSGKCMRTYMGHS------KAVRDISFCNDGTKFLTASYD------------KNIKYWDTETGQV---IRTFSTGKIPY 388 (590)
Q Consensus 330 ~~~~~~~~~~~~h~------~~V~~l~fspdg~~l~s~s~D------------g~I~vWd~~t~~~---~~~~~~~~~~~ 388 (590)
.+++.+..+..+. ..+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+.....+.
T Consensus 73 -~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 151 (349)
T 1jmx_B 73 -DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVY 151 (349)
T ss_dssp -TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCC
T ss_pred -CCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccc
Confidence 5677776665332 348899999999999998865 8999999988543 34444445566
Q ss_pred EEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC------------------------ceeEEEEeCCCCE-
Q 007757 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG------------------------AVNTITFVDSNRR- 443 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~------------------------~V~~i~~~p~~~~- 443 (590)
.+.+.+++ . +++++ +.|++||+.+++.+..+..+.. ...++.+++++..
T Consensus 152 ~~~~s~dg---~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 225 (349)
T 1jmx_B 152 LMRAADDG---S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 225 (349)
T ss_dssp CEEECTTS---C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred ceeECCCC---c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence 67777754 3 44443 4499999999988887754320 2344555544321
Q ss_pred ----------EEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeEEEEEccCceeeccccc
Q 007757 444 ----------FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKR 512 (590)
Q Consensus 444 ----------l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 512 (590)
+......+.+++|++ ......+..++++| ++++++++ ++.|.+||+.+.........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~ 293 (349)
T 1jmx_B 226 PATADLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL 293 (349)
T ss_dssp -CCCEEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred ccccccceeEEEEeccCCcEEeccc----------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC
Confidence 112233344444443 22455678999999 99999988 88999999988665433221
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC
Q 007757 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 560 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h 560 (590)
...+..++|+|+|++|++++.++.|.+||+.+++.+..+..+
T Consensus 294 ------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 294 ------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 123457999999999988888999999999999999888765
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=4.8e-18 Score=180.97 Aligned_cols=201 Identities=12% Similarity=0.153 Sum_probs=151.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC-------C--eeEE-----EeccCCCceeEEEEecCCCEEE----E
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS-------G--KCMR-----TYMGHSKAVRDISFCNDGTKFL----T 360 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~-------~--~~~~-----~~~~h~~~V~~l~fspdg~~l~----s 360 (590)
...++.|+++++ +.+|++++.++ |+||+.... . ..+. ....|...|++++|+|+|++|+ +
T Consensus 36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345899999999 78999999888 899876210 0 0111 1123567899999999999999 7
Q ss_pred EeCCCeEEEEECCCC--------cE---EEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEccc
Q 007757 361 ASYDKNIKYWDTETG--------QV---IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 428 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~--------~~---~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h 428 (590)
|+.|+.|+|||+.++ +. +..+.. ...+..+.|+|. ..++|++++.||.|++||++++..+.....|
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT--VPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS--CTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC--CCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 888999999998764 22 222221 344566777665 3478999999999999999999777777788
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecC------CCCcccEEEEcCCCCEEEEEE-cCC------e
Q 007757 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQS-LDN------Q 495 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~------~~~~i~~i~~sp~g~~l~s~s-~dg------~ 495 (590)
...|++++|+|++++|++|+.||.|++||++ ......+... |...+.+++|++++.++++.+ .+| .
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 9999999999999999999999999999998 4444444321 223789999999888776543 333 3
Q ss_pred EEEEEccCc
Q 007757 496 ILIYSTRER 504 (590)
Q Consensus 496 I~iwd~~~~ 504 (590)
+++|+++..
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 899998754
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.76 E-value=3.3e-17 Score=180.97 Aligned_cols=231 Identities=10% Similarity=0.079 Sum_probs=165.0
Q ss_pred CCceeEEEEecCCCEEEEEeC-CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEc---CCcEEEEECCC
Q 007757 343 SKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS---DKKIVQWDMNT 418 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~-Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~---dg~I~vwDl~t 418 (590)
..+|.+++|+|||++|++++. ||+++||++.+++..+.. ......+....++++ .++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt-~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN-REPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC-SSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee-cccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 557999999999999999887 999999999776655433 333223333444433 56776664 45455554432
Q ss_pred ---CceEEEEcccCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-
Q 007757 419 ---KEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD- 493 (590)
Q Consensus 419 ---~~~~~~~~~h~~~V~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d- 493 (590)
+... .+.. ...+...+|+|+++. +++++.++.+.+||+.++........ .. .+++|+|+|++|++++.+
T Consensus 98 ~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~---~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 98 SRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG---FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp TSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS---CEEEEEEETTEEEEEEEEE
T ss_pred cCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC---ceEEECCCCCEEEEEEEcC
Confidence 2222 3332 233456788888753 33344445566999988765544432 22 789999999999988877
Q ss_pred ---CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEecCCCCEEEEE
Q 007757 494 ---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 494 ---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg--~I~iwd~~t~~~~~~l~~h~~~V~~v~ 568 (590)
+.|++||+.++... .+..+ .+.+..++|||||++|++++.+| .|++||+.+++.. .+..|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~~----~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 244 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLR----VFDSG--EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR 244 (582)
T ss_dssp TTEEEEEEEETTTCCCE----EECCS--SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred CCCeEEEEEcCCCCCce----EeecC--CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence 78999998776432 23333 35568899999999999888888 8999999999888 7777877676677
Q ss_pred --------EcCCCCCEEEEEeCCCcEEEeC
Q 007757 569 --------WHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 569 --------~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|+|++ .++++++.||.++||+
T Consensus 245 ~~~~~~~~~spdg-~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 245 PTAITWLGYLPDG-RLAVVARREGRSAVFI 273 (582)
T ss_dssp CSEEEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred hccccceeEcCCC-cEEEEEEcCCcEEEEE
Confidence 99955 8999999999999995
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=4.2e-16 Score=161.76 Aligned_cols=268 Identities=13% Similarity=0.150 Sum_probs=194.2
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEEccCCCeeEEEeccC------CCceeEEEEec
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH------SKAVRDISFCN 353 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h------~~~V~~l~fsp 353 (590)
+++.++..+..+ .++|+|+ +++|++++ .++.|.+||+ .+.+.+..+... ......++|+|
T Consensus 42 ~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~-~t~~~~~~i~~~~~~~~~g~~p~~i~~sp 117 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDA-DKLTFEKEISLPPKRVQGLNYDGLFRQTT 117 (361)
T ss_dssp CEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEET-TTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred eEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEEC-cCCcEEEEEEcCccccccCCCcceEEECC
Confidence 456677777666 8999999 88888876 3678999998 577777776532 34578899999
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEE-ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-CceEEEE----
Q 007757 354 DGTKFLTASY--DKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEY---- 425 (590)
Q Consensus 354 dg~~l~s~s~--Dg~I~vWd~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-~~~~~~~---- 425 (590)
+|++|+++.. ++.|.+||+.+++.+.. +..+... .+.+.|.+ ...+++.+.||.+.+|++.. ++.....
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-~v~~~p~~--~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~ 194 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-SVIPQPNR--PRSFMTICGDGGLLTINLGEDGKVASQSRSKQ 194 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-EEEECTTS--SSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-eeEEcCCC--CeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence 9999999875 58999999999999888 7654432 23455544 36788899999999999865 5544222
Q ss_pred --cccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEeecCC---------CCcccEEEEcCCCCEEEEEEc
Q 007757 426 --DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPH---------MHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 426 --~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~~~---------~~~i~~i~~sp~g~~l~s~s~ 492 (590)
.....++ .+.+.+++..++..+.++.|.++|+.... ....+.... ......++++|+++.++++..
T Consensus 195 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 195 MFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp CSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred eEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 1112222 23346677788888889999999986543 222221100 011223789999888877654
Q ss_pred -----------CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEec
Q 007757 493 -----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--KVFRTLKC 559 (590)
Q Consensus 493 -----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~--~~~~~l~~ 559 (590)
.+.|.+||+.+.+.+..+ ..+ . ...++|+|||++|++++. +.|.+||..++ +.+.++..
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~~~v~~i---~~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTKQRVARI---PGR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTTEEEEEE---ECT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred cCCCcccccCCCceEEEEECCCCcEEEEE---ecC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 358999999887665433 222 2 667999999999998887 99999999999 99999877
Q ss_pred CCCCEEEEEEcCCC
Q 007757 560 HEGVCIGCEWHPLE 573 (590)
Q Consensus 560 h~~~V~~v~~sp~~ 573 (590)
+......++++|++
T Consensus 346 ~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 346 AAEASLQVQFHPVG 359 (361)
T ss_dssp SCSSEEEEEECCCS
T ss_pred CCCCcEEEEecCCC
Confidence 77788999999943
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=9e-18 Score=190.12 Aligned_cols=285 Identities=12% Similarity=0.088 Sum_probs=187.5
Q ss_pred ceeEEecCCCC---CeeEEEEcCCCCCEEEEEeC---------CCcEEEEEccCCCeeE--EEeccCCCceeEEEEecCC
Q 007757 290 RLVHTWSGHTK---GVSAIRFFPKYGHLILSAGM---------DTKVKIWDVVNSGKCM--RTYMGHSKAVRDISFCNDG 355 (590)
Q Consensus 290 ~~v~~l~gH~~---~V~~l~fsp~~g~~L~sgs~---------Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~l~fspdg 355 (590)
++...+.+|.. .|.+++|+|+ |++|++++. ++.|++||+ .+++.+ ..+ ...+.+++|+|||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~d~-~~g~~~~~~~l---~~~~~~~~~SPDG 121 (719)
T 1z68_A 47 QSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIYDL-SNGEFVRGNEL---PRPIQYLCWSPVG 121 (719)
T ss_dssp CEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEET-TTTEECCSSCC---CSSBCCEEECSST
T ss_pred cEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEEEC-CCCccccceec---CcccccceECCCC
Confidence 34445555544 4999999999 899988876 789999999 566552 222 3568999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEccCCCCc-------------------eEEEEecCCCCCcEEEEEEcCC-------
Q 007757 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-------------------YVVKLNPDDDKQNILLAGMSDK------- 409 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~lvsg~~dg------- 409 (590)
+.|+++. ++.|++|++.+++.......+... ..+.|+|++ ..|++++.|.
T Consensus 122 ~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG---~~la~~~~d~~~~~~~~ 197 (719)
T 1z68_A 122 SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG---KFLAYAEFNDTDIPVIA 197 (719)
T ss_dssp TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS---SEEEEEEEECTTSCEEE
T ss_pred CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC---CEEEEEEECCCCCceEE
Confidence 9999986 789999999998876544333221 357777765 4566665442
Q ss_pred ---------------------------cEEEEECCCCceE--EE------EcccCCceeEEEEeCCCCEEEEEeCCC---
Q 007757 410 ---------------------------KIVQWDMNTKEIT--QE------YDQHLGAVNTITFVDSNRRFVTSSDDK--- 451 (590)
Q Consensus 410 ---------------------------~I~vwDl~t~~~~--~~------~~~h~~~V~~i~~~p~~~~l~s~s~Dg--- 451 (590)
.|++||+.+++.. .. +..|...+.+++|+|+++++++....+
T Consensus 198 ~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~ 277 (719)
T 1z68_A 198 YSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNV 277 (719)
T ss_dssp EEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTE
T ss_pred eeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCe
Confidence 7889999988653 11 235777899999999987766644322
Q ss_pred -cEEEEE----CCCCcEEEEee---cCCCCccc-----EEEEcCCCCEEEE--EEcCC--eEEEEEccCceeeccccccc
Q 007757 452 -SLRVWE----FGIPVVIKYIS---EPHMHSMP-----SISLHPNTNWLAA--QSLDN--QILIYSTRERFQLNKKKRFA 514 (590)
Q Consensus 452 -~I~iwd----l~~~~~~~~~~---~~~~~~i~-----~i~~sp~g~~l~s--~s~dg--~I~iwd~~~~~~~~~~~~~~ 514 (590)
.|.+|| +.++.....+. ..+...+. .+.|+|+|+.|+. ...+| .|.+|++.++.. ..+.
T Consensus 278 ~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~----~~lt 353 (719)
T 1z68_A 278 SVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA----IQIT 353 (719)
T ss_dssp EEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC----EECS
T ss_pred EEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce----Eecc
Confidence 488899 76654433331 34555565 7899999996554 44555 466667655431 1222
Q ss_pred CcccccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC--CeE-EEEEec----CCCCEEEEEEcCCCCCEEEEEeC
Q 007757 515 GHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKS--CKV-FRTLKC----HEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t--~~~-~~~l~~----h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
.+ ...+..+.++ +++.|+..+.+ +.+.+|.+.. +.. ...+.. |...+..+.|+|++..++++++.
T Consensus 354 ~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~ 430 (719)
T 1z68_A 354 SG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYG 430 (719)
T ss_dssp CS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECC
T ss_pred cC--ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCC
Confidence 22 2234556666 78777766654 7788887653 421 233332 55667889999965555556655
Q ss_pred C--CcEEEeC
Q 007757 583 D--GLIKYWD 590 (590)
Q Consensus 583 D--G~I~iWD 590 (590)
+ ..+.+||
T Consensus 431 ~~~p~~~l~d 440 (719)
T 1z68_A 431 PGIPISTLHD 440 (719)
T ss_dssp BSSCEEEEEC
T ss_pred CCCCeEEEEE
Confidence 4 3466664
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=3.4e-17 Score=170.49 Aligned_cols=284 Identities=12% Similarity=0.032 Sum_probs=183.6
Q ss_pred eeEEecCCCCC-----eeEEEEcCCCCCEEEEEeCC---CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe
Q 007757 291 LVHTWSGHTKG-----VSAIRFFPKYGHLILSAGMD---TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS 362 (590)
Q Consensus 291 ~v~~l~gH~~~-----V~~l~fsp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s 362 (590)
.+..+..+... +.+++|+|+ |++|+.+... ..|.+|++ ..++......++......+.|+|+|++|+.++
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~ 99 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNL-ETQQAVQLTEGKGDNTFGGFISTDERAFFYVK 99 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTTEEEECCCSSCBCTTTCEECTTSSEEEEEE
T ss_pred ceEEEecCCCCccceeeecCcCCCC-CCEEEEEEecCCCceEEEEEC-CCCcEEEeecCCCCccccceECCCCCEEEEEE
Confidence 34455544333 788999999 7777665443 36888888 45554443333333334488999999999999
Q ss_pred CCCeEEEEECCCCcEEEEccCCCCce-E---EEE--------------ecCCCCCcEEEEE-----EcCCcEEEEECCCC
Q 007757 363 YDKNIKYWDTETGQVIRTFSTGKIPY-V---VKL--------------NPDDDKQNILLAG-----MSDKKIVQWDMNTK 419 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~~~~~-~---~~~--------------~~~~~~~~~lvsg-----~~dg~I~vwDl~t~ 419 (590)
.++.|.+||+.+++....+....... . +.+ ...++ +..++.+ ..+..|++||+.++
T Consensus 100 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 100 NELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL-TSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC-CSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred cCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCC-CcceeeeeeccCCCcceEEEEECCCC
Confidence 99999999999988765554332210 1 111 11111 1222222 35668999999988
Q ss_pred ceEEEEcccCCceeEEEEeC-CCCEEEEEeCC------CcEEEEECCCCcEEEEeecCC-CCcccEEEEcCCCCEEEEEE
Q 007757 420 EITQEYDQHLGAVNTITFVD-SNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 420 ~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~D------g~I~iwdl~~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~s~s 491 (590)
+..... .+...+..+.|+| ++..|+.++.+ ..|.+||+...... .+.... ...+..++|+|+|++|+..+
T Consensus 179 ~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (396)
T 3c5m_A 179 ELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVS 256 (396)
T ss_dssp CEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred cEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEe
Confidence 765554 4667889999999 78877776643 36888898655433 332221 33577889999999887776
Q ss_pred cC-----CeEEEEEccCceeecccccccCcccccceEEEEEcC-CCCEEEEEe----------------CCCcEEEEeCC
Q 007757 492 LD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGD----------------GEGKCWFWDWK 549 (590)
Q Consensus 492 ~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~sgs----------------~dg~I~iwd~~ 549 (590)
.+ +.|++||+.++.... +..+.+ .. +.|+| +|++|++++ .++.|++||+.
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~-l~~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 257 YFKGQTDRVIYKANPETLENEE-VMVMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp EETTTCCEEEEEECTTTCCEEE-EEECCS------EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred cCCCCccceEEEEECCCCCeEE-eeeCCC------CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 54 449999987654321 111111 12 78999 999888754 34789999998
Q ss_pred CCeEEEEEecCCC-----------CEEEEEEcCCCCCEEEEEe-CCCcEEEe
Q 007757 550 SCKVFRTLKCHEG-----------VCIGCEWHPLEQSKVATCG-WDGLIKYW 589 (590)
Q Consensus 550 t~~~~~~l~~h~~-----------~V~~v~~sp~~~~~l~s~g-~DG~I~iW 589 (590)
+++.. .+..+.. .+..++|+| ++..|+.++ .++...||
T Consensus 329 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 329 AKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTBCC-EEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEE
T ss_pred cCceE-EccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEE
Confidence 88754 3444544 256789999 455555554 46666665
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=3.1e-16 Score=162.74 Aligned_cols=247 Identities=12% Similarity=0.094 Sum_probs=167.2
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccC-CCceeEEEEecCCCE--EEEEe------------
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTK--FLTAS------------ 362 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~--l~s~s------------ 362 (590)
+...+..++|+|+ +++|++++.+ .|.+|++..++++....... .+.+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 4457889999999 8889888887 99999994256554433211 134677999999994 44553
Q ss_pred -CCCeEEEEECC-CCcEEEEcc-----CCCCceEEEEecCCCCCcEEEEEE-cCCcEEEEECC-CCceE--EEEc--ccC
Q 007757 363 -YDKNIKYWDTE-TGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMN-TKEIT--QEYD--QHL 429 (590)
Q Consensus 363 -~Dg~I~vWd~~-t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~-~dg~I~vwDl~-t~~~~--~~~~--~h~ 429 (590)
.++.+.+|++. .++....+. ....+..+.++|++ .+++++. .++.|++||+. +++.. ..+. .|.
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG---~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE---TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS---SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC---CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466544333 23456677777765 3455544 46899999998 77653 2333 235
Q ss_pred CceeEEEEeCCCCEEEEEeC-CCcEEEEECC--CCcEE---EEeec-CC-----CC------cccEEE-EcCCCCEEEEE
Q 007757 430 GAVNTITFVDSNRRFVTSSD-DKSLRVWEFG--IPVVI---KYISE-PH-----MH------SMPSIS-LHPNTNWLAAQ 490 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~--~~~~~---~~~~~-~~-----~~------~i~~i~-~sp~g~~l~s~ 490 (590)
..+..++|+|++++|++++. ++.|.+|++. ++... ..+.. +. .. .+..++ |+|+|++|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 67899999999999887765 6899999875 34332 12221 11 11 477899 99999998877
Q ss_pred EcC-C-----eEEEEEcc-CceeecccccccCcccccceEEEEEcC---CCCEEEEEeCC-CcEEEEeCCCC
Q 007757 491 SLD-N-----QILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGDGE-GKCWFWDWKSC 551 (590)
Q Consensus 491 s~d-g-----~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~sgs~d-g~I~iwd~~t~ 551 (590)
+.+ + .|.+|++. ++...........+ ......++|+| +|++|++++.+ +.|.+|++...
T Consensus 273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 653 3 89999986 33321110011111 11233588999 89999998864 89999998765
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.74 E-value=3.3e-16 Score=166.74 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=142.6
Q ss_pred CCCCCeeEEEEcCCCCCEEE----EEeCCCcEEEEEccCC-----C--e---eEEEeccCCCceeEEEEecC-CCEEEEE
Q 007757 297 GHTKGVSAIRFFPKYGHLIL----SAGMDTKVKIWDVVNS-----G--K---CMRTYMGHSKAVRDISFCND-GTKFLTA 361 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~----sgs~Dg~I~iWd~~~~-----~--~---~~~~~~~h~~~V~~l~fspd-g~~l~s~ 361 (590)
.|...|++++|+|+ +++|+ +|+.|+.|+|||+... . + .+..+.+|...|.+++|+|+ +.+|+++
T Consensus 90 ~~~~~v~~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 46788999999999 88888 7889999999998421 1 1 25667789999999999997 8899999
Q ss_pred eCCCeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccC-------Ccee
Q 007757 362 SYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-------GAVN 433 (590)
Q Consensus 362 s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~-------~~V~ 433 (590)
+.||+|++||++++..+..... ...+.+++|++++ .+|++|+.||.|++||++ ++....+..|. ..|.
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg---~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG---KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS---SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC---CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 9999999999999876544433 3456777787754 679999999999999998 66666665443 3899
Q ss_pred EEEEeCCCCEEEEE-eCCC------cEEEEECCCCc-----EEEEeecC------CCCcccEEEEcCCCCEEEEEEcC-C
Q 007757 434 TITFVDSNRRFVTS-SDDK------SLRVWEFGIPV-----VIKYISEP------HMHSMPSISLHPNTNWLAAQSLD-N 494 (590)
Q Consensus 434 ~i~~~p~~~~l~s~-s~Dg------~I~iwdl~~~~-----~~~~~~~~------~~~~i~~i~~sp~g~~l~s~s~d-g 494 (590)
+++|++++.++++. +.+| .+++|+++... ....+... ...+...+...++.+++++++.. +
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~ 324 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST 324 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence 99999988776543 3443 38999997542 22222211 11122233344666776666543 4
Q ss_pred eEEEEEc
Q 007757 495 QILIYST 501 (590)
Q Consensus 495 ~I~iwd~ 501 (590)
.|.++..
T Consensus 325 dv~vl~~ 331 (434)
T 2oit_A 325 EVSILAR 331 (434)
T ss_dssp BCEEEEE
T ss_pred ceeEEEe
Confidence 4555543
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=2.2e-16 Score=179.53 Aligned_cols=270 Identities=11% Similarity=0.034 Sum_probs=180.5
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCc-----eeEEEEecCCCEEEEEeCC---------Ce
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-----VRDISFCNDGTKFLTASYD---------KN 366 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-----V~~l~fspdg~~l~s~s~D---------g~ 366 (590)
...+++|+|+ +.+|+++ |+.|++||+ .++++...+.+|... ..++.|||||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~d-g~~~~~~--~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISD-HEYLYKQ--ENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSS-SEEEEEE--TTEEEEEET-TTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCC-CcEEEEc--CCcEEEEEC-CCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 4568899999 7888886 999999999 677777777777643 2448899999999998876 56
Q ss_pred EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-cccCCc--------------
Q 007757 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGA-------------- 431 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-~~h~~~-------------- 431 (590)
+.+||+.++++..............|+|++. .|+.+ .++.|++|++.+++..+.. .++...
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~---~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCC---EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 7799999998765433345566778888664 35554 5789999999988755421 222222
Q ss_pred ---eeEEEEeCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--EEEEe
Q 007757 432 ---VNTITFVDSNRRFVTSSDDK------------------------------------SLRVWEFGI---PV--VIKYI 467 (590)
Q Consensus 432 ---V~~i~~~p~~~~l~s~s~Dg------------------------------------~I~iwdl~~---~~--~~~~~ 467 (590)
...+.|+|+|++|+.++.|. +|++||+.+ +. ....+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 23589999999999875322 488899887 62 22333
Q ss_pred ec-----CCCCcccEEEEcCCCCEEEEEEcC----CeEEEEEccCce----eecccccc-cCcccccce-----EEEEEc
Q 007757 468 SE-----PHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERF----QLNKKKRF-AGHIVAGYA-----CQVNFS 528 (590)
Q Consensus 468 ~~-----~~~~~i~~i~~sp~g~~l~s~s~d----g~I~iwd~~~~~----~~~~~~~~-~~~~~~~~v-----~~v~~s 528 (590)
.. .+...+..++|+|+|+.++..... ..|.+||+.++. +......+ .++ ..++ ..+.|+
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~--~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST--TGWVGRFRPSEPHFT 327 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS--SSCSSSSSCCCCEEC
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC--CceEccCcCCCceEc
Confidence 32 266678999999999977665433 369999998765 22111110 112 1222 257899
Q ss_pred CCCCEEE-EEe-CC--CcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 529 PDGRFVM-SGD-GE--GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 529 pdg~~l~-sgs-~d--g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
|||+.|+ ..+ .+ ..|++||+.++....... ....|..+.+ +++..+++++..
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSSEEEEEESC
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCCEEEEEEec
Confidence 9999876 555 33 468889988776554333 3445665543 324444444443
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=2.8e-15 Score=149.43 Aligned_cols=238 Identities=11% Similarity=0.220 Sum_probs=173.5
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC-------CCceEEEEecCCCCCcEEEEEEc-CCcEE
Q 007757 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-------KIPYVVKLNPDDDKQNILLAGMS-DKKIV 412 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~-------~~~~~~~~~~~~~~~~~lvsg~~-dg~I~ 412 (590)
++-..+.+++++++++++++.+.++.|.+||.. ++.+..+... ..+..+++.. ..+.++++... ++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~--~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR--NSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET--TTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEc--CCCeEEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 6666665421 2344555532 23355665543 89999
Q ss_pred EEECCCCceEEEEcc-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCcccEEEEcCCCCEEEEE
Q 007757 413 QWDMNTKEITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 413 vwDl~t~~~~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~s~ 490 (590)
+|| .+++.+..+.. +...+.++++.++++.+++...++.|++||.. ...+..+.. .+...+..++++++++++++.
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 999 56777766643 44678999999999988888888999999965 444444432 344568899999999987777
Q ss_pred EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEecCCC--CEEEE
Q 007757 491 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEG--VCIGC 567 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~~t~~~~~~l~~h~~--~V~~v 567 (590)
+.++.|.+|+.... .+.. +........+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.++
T Consensus 182 ~~~~~i~~~~~~g~-~~~~---~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQ-YLRQ---IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETTCC-EEEE---ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCCCC-EEEE---EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence 78899999998543 2221 21111124567899999999888888776 9999994 6777777766543 47899
Q ss_pred EEcCCCCCEEEEEeCCCcEEEeC
Q 007757 568 EWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 568 ~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+++| ++.++++ +.|++|++|+
T Consensus 257 ~~~~-~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 257 ALMD-DGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EEET-TTEEEEE-ETTTEEEEEE
T ss_pred EECC-CCcEEEE-CCCCeEEEEE
Confidence 9999 5666666 6799999995
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=6e-16 Score=173.31 Aligned_cols=286 Identities=7% Similarity=-0.026 Sum_probs=192.4
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEE--eCCCcEEEEEccCCCeeEEEeccCCCcee---------EEEEe--cCCCE-E
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSA--GMDTKVKIWDVVNSGKCMRTYMGHSKAVR---------DISFC--NDGTK-F 358 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sg--s~Dg~I~iWd~~~~~~~~~~~~~h~~~V~---------~l~fs--pdg~~-l 358 (590)
..+.+|...|..++|+++ .-++++. +.++...||.. ..+...+.+..|...+. ...|+ |||++ |
T Consensus 17 ~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 356789999999999987 5566666 55889999997 34555677777777776 67676 99998 7
Q ss_pred EEEeC-CCeEEEEECC--C-CcEEEEccC------CCCceEEEEecCCCCCcEEEEEEcC----------CcEEEEECCC
Q 007757 359 LTASY-DKNIKYWDTE--T-GQVIRTFST------GKIPYVVKLNPDDDKQNILLAGMSD----------KKIVQWDMNT 418 (590)
Q Consensus 359 ~s~s~-Dg~I~vWd~~--t-~~~~~~~~~------~~~~~~~~~~~~~~~~~~lvsg~~d----------g~I~vwDl~t 418 (590)
+.++. +..|.+|++. + +... .+.. ......+.|+|++ ..|++++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPER---GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTT---TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCC---CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 76654 5667777776 3 4433 3332 2234456777755 456666655 5899999988
Q ss_pred ------CceEEEEc-ccCCceeEEEEeCCCCEEEEEeCC--------CcEEEEECC-CC--cEEEEeecCCCCcccEEEE
Q 007757 419 ------KEITQEYD-QHLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFG-IP--VVIKYISEPHMHSMPSISL 480 (590)
Q Consensus 419 ------~~~~~~~~-~h~~~V~~i~~~p~~~~l~s~s~D--------g~I~iwdl~-~~--~~~~~~~~~~~~~i~~i~~ 480 (590)
++. ..+. .+...+..+.|+|+|++|+.++.+ ..|++||+. ++ .....+...+...+..+.|
T Consensus 171 ~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 171 SAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp TTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred CccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 554 3444 556788899999999999988754 379999998 45 2344444445677899999
Q ss_pred cCCCCEEEEEEcCC--eEEEEEccCceeecccccccCcc----cccceEEEEEcCCCCEEEEEeCCCcEEEE--eCCCCe
Q 007757 481 HPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFW--DWKSCK 552 (590)
Q Consensus 481 sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~dg~I~iw--d~~t~~ 552 (590)
+|+|++++++..++ .|.+|++.++.... +....... ....+..++|+|+++++++++. +.++|| |+.+++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 99999888877788 56666654443221 11111100 0001345899999999999998 998998 666665
Q ss_pred EEEEEecCCCCEEEE-EEcCCCCCEEEEEeCCCcEEEe
Q 007757 553 VFRTLKCHEGVCIGC-EWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 553 ~~~~l~~h~~~V~~v-~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+..+..|...+..+ ++.. +.-++++++.+....||
T Consensus 328 -~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVV 363 (662)
T ss_dssp -EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEE
T ss_pred -EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEE
Confidence 56777787777776 5543 22234444555544444
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=3.6e-15 Score=148.71 Aligned_cols=241 Identities=15% Similarity=0.308 Sum_probs=175.5
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec------cCCCceeEEEEe-cCCCEEEEEeC-CCeEE
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM------GHSKAVRDISFC-NDGTKFLTASY-DKNIK 368 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~------~h~~~V~~l~fs-pdg~~l~s~s~-Dg~I~ 368 (590)
+|-..+.+|+++++ ++++++.+.++.|.+||. .+..+..+. +|...+.++++. ++++++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~--~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDK--EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECT--TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCC-CCEEEEECCCCEEEEECC--CCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 45677999999999 888888888999999997 366666654 244678999995 67766666543 89999
Q ss_pred EEECCCCcEEEEccCCC--CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc--ccCCceeEEEEeCCCCEE
Q 007757 369 YWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 369 vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~--~h~~~V~~i~~~p~~~~l 444 (590)
+|| .+++.+..+.... .+..+.+.+++ +++++...++.|++||.. ++.+..+. .+...+.+|+++++++.+
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKG---RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTS---CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCC---CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 999 5677777665433 44556665533 577777778999999964 55565553 345678999999999988
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeec-CCCCcccEEEEcCCCCEEEEEEcCC-eEEEEEccCceeecccccccCcccccce
Q 007757 445 VTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
++.+.++.|++||... ..+..+.. .+...+..++++++|.++++...++ .|.+|+.... .+... ..+.....+
T Consensus 179 v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~~~---~~~~~~~~~ 253 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISAL---ESKVKHAQC 253 (286)
T ss_dssp EEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEE---EESSCCSCE
T ss_pred EEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEEEE---cccCCCCcc
Confidence 8888899999999854 44444432 2235678999999999888887776 9999996543 22222 222222346
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
..++++|+|+++++ +.++.|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 68999999987777 67999999998654
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=1e-15 Score=158.78 Aligned_cols=257 Identities=13% Similarity=0.135 Sum_probs=181.8
Q ss_pred CCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeC----------CCeEEEEECCCCcEEEEccCC-----
Q 007757 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTG----- 384 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~----------Dg~I~vWd~~t~~~~~~~~~~----- 384 (590)
.|+.|.+||. .+++.+..+..+..+ .++|+|+|++|++++. ++.|.+||+.+++.+..+...
T Consensus 29 ~d~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDY-TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEET-TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEEC-CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 3789999998 577788888766555 8999999999998863 678999999999998887642
Q ss_pred --CCceEEEEecCCCCCcEEEEEE-c-CCcEEEEECCCCceEEE-EcccCCceeEEEEeCCC-CEEEEEeCCCcEEEEEC
Q 007757 385 --KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEF 458 (590)
Q Consensus 385 --~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~vwDl~t~~~~~~-~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl 458 (590)
..+..+.+++++ .+|+++. . ++.|.+||+.+++.+.. +. ..+ ...+.+.|++ ..+++.+.||.+.+|++
T Consensus 106 ~g~~p~~i~~spdg---~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 106 GLNYDGLFRQTTDG---KFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp BCCCGGGEEECTTS---SEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred cCCCcceEEECCCC---CEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 446677888765 4565554 3 68999999999988777 43 222 2335567765 67888999999999998
Q ss_pred CC-CcEEEEee-----cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceee--ccccccc------CcccccceEE
Q 007757 459 GI-PVVIKYIS-----EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL--NKKKRFA------GHIVAGYACQ 524 (590)
Q Consensus 459 ~~-~~~~~~~~-----~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~------~~~~~~~v~~ 524 (590)
.. +....... .....+ ..+.+++++..++..+.++.|.++|+...... ....... +.. ......
T Consensus 181 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~g~~~ 258 (361)
T 2oiz_A 181 GEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV-PGGYNL 258 (361)
T ss_dssp CTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE-ECCSSC
T ss_pred CCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc-cCCeeE
Confidence 65 43332211 111122 22334667777777888999999998643211 0000000 000 011112
Q ss_pred EEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 525 VNFSPDGRFVMSGDG-----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 525 v~~spdg~~l~sgs~-----------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+| ++++|++++. +.|.+||
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEE
Confidence 689999888877643 3489999999999999999887 89999999 5668888886 9999997
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=3.4e-15 Score=152.68 Aligned_cols=240 Identities=11% Similarity=0.152 Sum_probs=177.3
Q ss_pred CCceeEEEEecCCCEEEEEeCC------------------------CeEEEEECCCCcEEEEccCCC--CceEEEEecCC
Q 007757 343 SKAVRDISFCNDGTKFLTASYD------------------------KNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDD 396 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~D------------------------g~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~ 396 (590)
-..+.+|+++++|+++++.+.+ +.|.+||..+++.+..+.... .+..+++.+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4678999999999988888777 479999999999887765443 45566666533
Q ss_pred CCCcEEEEEEcCCcEEEEECCCCc-eEEEE---------cccCCceeEEEEeC-CCCEEEEEe-CCCcEEEEECCCCcEE
Q 007757 397 DKQNILLAGMSDKKIVQWDMNTKE-ITQEY---------DQHLGAVNTITFVD-SNRRFVTSS-DDKSLRVWEFGIPVVI 464 (590)
Q Consensus 397 ~~~~~lvsg~~dg~I~vwDl~t~~-~~~~~---------~~h~~~V~~i~~~p-~~~~l~s~s-~Dg~I~iwdl~~~~~~ 464 (590)
+++++...++.|++||..... .+..+ ..+......|+++| ++..+++.+ .++.|++|+. .+..+
T Consensus 103 ---~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~ 178 (329)
T 3fvz_A 103 ---NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFV 178 (329)
T ss_dssp ---CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEE
T ss_pred ---CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEE
Confidence 588888889999999986552 55555 34555789999999 788888886 6899999994 55555
Q ss_pred EEeecC---------CCCcccEEEEcCC-CCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC-----
Q 007757 465 KYISEP---------HMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP----- 529 (590)
Q Consensus 465 ~~~~~~---------~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp----- 529 (590)
..+... .......|+++|+ +.++++...++.|++|+..++..+..+. .......+..++|+|
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~---~~~~~~~~~~~~~~pg~~~~ 255 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK---HASFGRNVFAISYIPGFLFA 255 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC---CTTTTTCEEEEEEETTEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe---ccccCCCcceeeecCCEEEE
Confidence 555321 2234788999998 6677777778999999998554443322 111234566788999
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCeEEEEEe---cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 530 -DGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 -dg~~l~sgs~dg~I~iwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+|+..++...+..|++|+..+++.+..+. .+...+.+++++| ++.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEe
Confidence 33333333445689999999999999884 5667799999999 558888888999999985
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=7.2e-15 Score=150.23 Aligned_cols=243 Identities=13% Similarity=0.198 Sum_probs=178.6
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCC------------------------CcEEEEEccCCCeeEEEec-cCCCceeEEEEec
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMD------------------------TKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCN 353 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~D------------------------g~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fsp 353 (590)
-+.|.+|+++|+ |+++++.+.+ +.|.+||. .+++.+..+. ++......|++++
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDP-NNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECT-TTCCEEEEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEEC-CCCeEEeccCCCccCCceEEEECC
Confidence 356999999999 8999888877 47999998 5677766654 4556789999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCc-EEEEccC--------C--CCceEEEEecCCCCCcEEEEEE-cCCcEEEEECCCCce
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQ-VIRTFST--------G--KIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEI 421 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~-~~~~~~~--------~--~~~~~~~~~~~~~~~~~lvsg~-~dg~I~vwDl~t~~~ 421 (590)
+|+++++...++.|++||..... .+..+.. . ..+..+++.+. .+.++++.+ .++.|++|| .++..
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~--~g~lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS--TGAVFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT--TCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC--CCeEEEEeCCCCCeEEEEc-CCCCE
Confidence 99988888889999999986542 4444421 1 23556666652 336777776 699999999 56777
Q ss_pred EEEEcc----------cCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeec-CCCCcccEEEEcCCCCEEEE
Q 007757 422 TQEYDQ----------HLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 422 ~~~~~~----------h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~s 489 (590)
+..+.. +......|+++|+ +..+++...++.|++|+..++..+..+.. .+...+..++++| +..+++
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 777642 3344899999998 77778888899999999987777777643 3445678899999 433333
Q ss_pred E-------EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 490 Q-------SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 490 ~-------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
. ..+..|++|+..++..+..+....++ ......++++|+|.++++...++.|++|++.
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH--FDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC--CSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc--cCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 2 33458999998877655443221222 3456789999999888888889999999964
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=2.8e-15 Score=152.81 Aligned_cols=269 Identities=13% Similarity=0.174 Sum_probs=188.3
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
..|.++.|+++ +..+++.+.++.+++|. ......+..+...+.+++|+++|++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCC-ccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 34778889988 66677778889999993 34566677777888999999999988888889999999999888765
Q ss_pred Ec-cCCCCceEEEEecCCCCCcEEEEEEcC----CcEEEEECCCCceEEEEc--ccCCceeEEEEeCCCCEEEEEeC---
Q 007757 380 TF-STGKIPYVVKLNPDDDKQNILLAGMSD----KKIVQWDMNTKEITQEYD--QHLGAVNTITFVDSNRRFVTSSD--- 449 (590)
Q Consensus 380 ~~-~~~~~~~~~~~~~~~~~~~~lvsg~~d----g~I~vwDl~t~~~~~~~~--~h~~~V~~i~~~p~~~~l~s~s~--- 449 (590)
.. .....+..+.+.+++ .++++...+ +.|.+||..++.....+. .+...+.++.++|+++.+++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg---~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp EEECSSSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred EeeCCCCCcceEEECCCC---cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 44 234455566666543 566666555 689999998887654443 24457899999999988877654
Q ss_pred ---CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEE-EcCCeEEEEEccC-ceeeccc-----ccccCcccc
Q 007757 450 ---DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRE-RFQLNKK-----KRFAGHIVA 519 (590)
Q Consensus 450 ---Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~-s~dg~I~iwd~~~-~~~~~~~-----~~~~~~~~~ 519 (590)
.+.|..|+........... ....+..++|+|++++|+++ +.++.|.+|++.. +..+... ..+.++
T Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--- 232 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--- 232 (333)
T ss_dssp TBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS---
T ss_pred cCCCceEEEEeCCCCEEEEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC---
Confidence 3456666655444332221 22346789999999866555 4578999999853 2211110 111111
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCC------CEEEEEEcCCCCCEEEEEeCC
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG------VCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~------~V~~v~~sp~~~~~l~s~g~D 583 (590)
..+..++++++|+++++...++.|.+||. .++.+..+..+.. .+.+++|+|+ +..|+.++.+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d-g~~L~v~~~~ 300 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG-TNQLIICSND 300 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT-SCEEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC-CCEEEEEeCc
Confidence 34567999999998888888899999998 5777777765543 5889999984 4455544444
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=3.9e-14 Score=144.78 Aligned_cols=253 Identities=11% Similarity=0.048 Sum_probs=186.0
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
....+.+.. ++++++...++.|.+||. .+++.+.++. .......++++++++.+++...++.|.+||+.+++....
T Consensus 45 ~~~~i~~~~--~~lyv~~~~~~~v~viD~-~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 45 VAQSMVIRD--GIGWIVVNNSHVIFAIDI-NTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp CEEEEEEET--TEEEEEEGGGTEEEEEET-TTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred cceEEEEEC--CEEEEEEcCCCEEEEEEC-cccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 456777743 567777777899999999 6788888774 456789999999985444444899999999999999888
Q ss_pred ccCCC------CceEEEEecCCCCCcEEEEEE-cCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC---
Q 007757 381 FSTGK------IPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD--- 450 (590)
Q Consensus 381 ~~~~~------~~~~~~~~~~~~~~~~lvsg~-~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D--- 450 (590)
+..+. .+..+.+ . .+.++++.. .++.|.+||+.+++.+..+... .....+.+++++++++++..+
T Consensus 121 i~~g~~~~~~~~p~~i~~--~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--Y--GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--E--TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTT
T ss_pred EEcCCccccCCCcceEEE--E--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccC
Confidence 87665 5555655 2 224555544 4899999999999988877643 345789999999877777654
Q ss_pred -------CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceE
Q 007757 451 -------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 451 -------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~ 523 (590)
+.|.++|..+.+....+..+.......++++|++++|+++.. .|.+||..+..... ....... .....
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~~--~~~p~ 270 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-RPFLEFR--DTKYY 270 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-SCSBCCC--SSCEE
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-eeeecCC--CCceE
Confidence 789999999888777765444457889999999999888755 89999997754321 1111111 24566
Q ss_pred EEEEcC-CCCEEEEE----eCCCcEEEEeCCCCeEEEEEecCCCCEEEEEE
Q 007757 524 QVNFSP-DGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 524 ~v~~sp-dg~~l~sg----s~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
.++++| ++.+.++. ..++.|.+||.. ++.+.++..... ...++|
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 799999 55555665 578999999988 999988875333 355555
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=3e-14 Score=145.76 Aligned_cols=254 Identities=13% Similarity=0.073 Sum_probs=169.5
Q ss_pred CeeEEEEcCCCCCEEEEEe---------CCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC---C--e
Q 007757 301 GVSAIRFFPKYGHLILSAG---------MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---K--N 366 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs---------~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---g--~ 366 (590)
.+..+++ + |+.|+... .++.|.+|++ ..++. +.+ ..+..++|+|||++|+.++.+ + .
T Consensus 16 ~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~-~~~~~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENL-KNNAR-RFI----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEET-TTCCE-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--C-CcEEEEEEeecCcccCCccceEEEEeC-CCCce-EEc----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4666777 5 66665432 2577999998 44443 333 568899999999999988754 2 4
Q ss_pred EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEc---------------------------CCcEEEEECCCC
Q 007757 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS---------------------------DKKIVQWDMNTK 419 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~---------------------------dg~I~vwDl~t~ 419 (590)
|.+|++.+++......... ...+.|+|++ ..|+.++. ...|++||+.++
T Consensus 87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg---~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN-IRSLEWNEDS---RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEETTTTEEEEEEEESE-EEEEEECTTS---SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred EEEEECCCCceEEEEcCCC-ccceeECCCC---CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 8888999888766655444 5566666654 34544442 257999999998
Q ss_pred ceEEEEcccCCceeEEEEeCCCCEEEEEeCCC-------cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 420 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDK-------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 420 ~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg-------~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
+.+..+.. . .+..+.|+|++ ++++++.+. ...||.+..+ ....+.. + ..+.. ++|+|++|+.++.
T Consensus 163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~-~-~~~~~--~spdg~~l~~~~~ 234 (347)
T 2gop_A 163 EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKMFE-K-VSFYA--VDSDGERILLYGK 234 (347)
T ss_dssp EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEEEE-E-ESEEE--EEECSSCEEEEEC
T ss_pred eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEEecc-C-cceee--ECCCCCEEEEEEc
Confidence 77455544 3 78999999999 777776542 3445544433 3344433 2 33433 4999999888775
Q ss_pred C--------CeEEEEEccCceeecccccccCcccccceEE-EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCC
Q 007757 493 D--------NQILIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 563 (590)
Q Consensus 493 d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~-v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~ 563 (590)
+ ..|.+|| ++... ....++ ...+.. +.|+ +| ++++++.++.++|| +.+++... +..+.+.
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~---~l~~~~--~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~ 303 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVM---GILDEV--DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHW 303 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEE---ESSTTC--CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSE
T ss_pred cccCCccccceEEEEC--CCceE---eccccC--CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCe
Confidence 4 3677887 33221 112222 234554 8899 88 88999999999999 87666544 4445778
Q ss_pred EEEEEEcCCCCCEEEEEeCCCcE-EEe
Q 007757 564 CIGCEWHPLEQSKVATCGWDGLI-KYW 589 (590)
Q Consensus 564 V~~v~~sp~~~~~l~s~g~DG~I-~iW 589 (590)
|.+++|+| .++++++.++.. .||
T Consensus 304 v~~~~~s~---~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 304 IMGFDVDE---IVVYLKETATRLRELF 327 (347)
T ss_dssp EEEEEESS---SEEEEEECSSSCCEEE
T ss_pred EEeeeeeC---cEEEEEcCCCChHHhe
Confidence 99999998 577787777654 555
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=6.9e-13 Score=132.08 Aligned_cols=274 Identities=12% Similarity=0.104 Sum_probs=189.3
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEE-EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC
Q 007757 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 295 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~ 373 (590)
+..+...+.+|++.++ +.++++...++.|.+||.. +.... .+..+...+.++++.++|.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDK-GKVWITQHKANMISCINLD--GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC--CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 4456678999999999 8888777668899999983 43332 223355789999999999988877778999999986
Q ss_pred CCcEEEEcc---CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE-EcccCCceeEEEEeCCCCEEEEEeC
Q 007757 374 TGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 374 t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~-~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
++. ..+. ....+..+.+.++ +.++++...++.|.+||. +++.... ...+...+.++++.++++.+++...
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPN---GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred -CcE-EEEeCCCcCCCceeeEECCC---CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 443 2222 2234445555543 356676667889999999 5554432 2234567899999999988887777
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
++.|.+||. .+.............+.++++++++.++++...++.|.+|+. ++... .. .... ....+..+++++
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~-~~~~--~~~~~~~i~~~~ 234 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EF-KIPT--PNARPHAITAGA 234 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EE-ECSS--TTCCEEEEEECS
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EE-ECCC--CCCCceeEEECC
Confidence 889999998 554443322233456789999999987776666889999998 43322 11 1111 134577899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEE--ecCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l--~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
+|+++++...++.|.+||. ++.. ..+ ..+...+.++++ + ++.++++.+.++.++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~-~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-D-GETIWFAMECDKIGK 290 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-C-SSCEEEEETTTEEEE
T ss_pred CCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-c-CCCEEEEecCCcEEE
Confidence 9997777667889999998 4543 333 344567899999 7 666666665444444
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=1.4e-14 Score=150.53 Aligned_cols=251 Identities=13% Similarity=0.060 Sum_probs=169.4
Q ss_pred CCCeeEEEeccCCCceeE-----EEEecCCCEEEEEeC-CC--eEEEEECCCCcEEEEccCCCCce-EEEEecCCCCCcE
Q 007757 331 NSGKCMRTYMGHSKAVRD-----ISFCNDGTKFLTASY-DK--NIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNI 401 (590)
Q Consensus 331 ~~~~~~~~~~~h~~~V~~-----l~fspdg~~l~s~s~-Dg--~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 401 (590)
.++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++............ ...|+|++ ..
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg---~~ 94 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD---DA 94 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS---SE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC---CE
Confidence 567778888888766665 889999999999887 66 48889999998876655443322 45677765 56
Q ss_pred EEEEEcCCcEEEEECCCCceEEEEcccCCceeEEE--EeCCCCEEEEE----------------------eCCCcEEEEE
Q 007757 402 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT--FVDSNRRFVTS----------------------SDDKSLRVWE 457 (590)
Q Consensus 402 lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~--~~p~~~~l~s~----------------------s~Dg~I~iwd 457 (590)
|+.++.++.|++||+.+++....+..+...+.... ++++++.++.. ..+..|++||
T Consensus 95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 88888889999999999988777766666665444 47899888743 2446799999
Q ss_pred CCCCcEEEEeecCCCCcccEEEEcC-CCCEEEEEEcC------CeEEEEEccCceeecccccccCcccccceEEEEEcCC
Q 007757 458 FGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 530 (590)
+.++....... +...+..+.|+| +|+.|+.++.+ ..|.++++...... .+..+.....+..+.|+||
T Consensus 175 ~~~g~~~~l~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 175 LKTGESTVILQ--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp TTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEEECTT
T ss_pred CCCCceEEeec--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccceECCC
Confidence 98876544432 445678999999 99999887764 37888887654322 1222211134667899999
Q ss_pred CCEEEEEeC-CC----cEEEEeCCCCeEEE--EEecCCCC---EEEEEEcCCCCCEEEEE--------eCCCcEEEeC
Q 007757 531 GRFVMSGDG-EG----KCWFWDWKSCKVFR--TLKCHEGV---CIGCEWHPLEQSKVATC--------GWDGLIKYWD 590 (590)
Q Consensus 531 g~~l~sgs~-dg----~I~iwd~~t~~~~~--~l~~h~~~---V~~v~~sp~~~~~l~s~--------g~DG~I~iWD 590 (590)
|+.|+..+. ++ .|++||+.+++... .+..+... ...+.|+|++..++++. +.+..|++||
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 997765432 22 39999999987533 33321100 11236899544444332 4466788886
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.3e-14 Score=162.31 Aligned_cols=257 Identities=9% Similarity=-0.026 Sum_probs=162.5
Q ss_pred eEEecCCCCCee---------EEEEc--CCCCCE-EEEEe-CCCcEEEEEccCCC-eeEEEecc-----CCCceeEEEEe
Q 007757 292 VHTWSGHTKGVS---------AIRFF--PKYGHL-ILSAG-MDTKVKIWDVVNSG-KCMRTYMG-----HSKAVRDISFC 352 (590)
Q Consensus 292 v~~l~gH~~~V~---------~l~fs--p~~g~~-L~sgs-~Dg~I~iWd~~~~~-~~~~~~~~-----h~~~V~~l~fs 352 (590)
.+.+..|...|. ...|+ |+ ++. |+.++ .+..|.+|++...+ .....+.. |...+.+++|+
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC
Confidence 345566666655 66666 88 555 55444 35566666652002 34555655 67789999999
Q ss_pred cCCCEEEEEeCC----------CeEEEEECCC------CcEEEEc-cCCCCceEEEEecCCCCCcEEEEEEcC-------
Q 007757 353 NDGTKFLTASYD----------KNIKYWDTET------GQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSD------- 408 (590)
Q Consensus 353 pdg~~l~s~s~D----------g~I~vWd~~t------~~~~~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~d------- 408 (590)
|||+.|++++.+ ..|.+||+.+ +...... ..........++|++ ..|+.++.+
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG---~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG---RQAVWLAWDHPRMPWE 215 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTS---SEEEEEEECTTCCTTT
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCC---CEEEEEECCCCCCCCC
Confidence 999999999877 5899999998 6654433 223333445666654 456655544
Q ss_pred -CcEEEEECC-CC---ceEEEEcccCCceeEEEEeCCCCEEEEEeCCC--cEEEEECCCCcEEEEeecCCCCc-------
Q 007757 409 -KKIVQWDMN-TK---EITQEYDQHLGAVNTITFVDSNRRFVTSSDDK--SLRVWEFGIPVVIKYISEPHMHS------- 474 (590)
Q Consensus 409 -g~I~vwDl~-t~---~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg--~I~iwdl~~~~~~~~~~~~~~~~------- 474 (590)
..|++||+. ++ +.......|...+..+.|+|+|+++++++.++ .|.+||+..+... .+...+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~ 294 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTP 294 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCST
T ss_pred CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccc
Confidence 479999999 57 44444455678899999999999888888888 5666666555543 332222211
Q ss_pred -ccEEEEcCCCCEEEEEEcCCeEEEE--EccCceeecccccccCcccccceEEE-EEcCCCCEEEEEeCCC--cEEEEeC
Q 007757 475 -MPSISLHPNTNWLAAQSLDNQILIY--STRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVMSGDGEG--KCWFWDW 548 (590)
Q Consensus 475 -i~~i~~sp~g~~l~s~s~dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~v~~v-~~spdg~~l~sgs~dg--~I~iwd~ 548 (590)
+..++|+|++.++++++. +.++|| |+.++. + ..+..+ ...+..+ +++.+.-++++++.+. .|++||+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~---~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 295 GMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L---VDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp TCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E---EECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred cCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E---EEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 567899999999999988 999999 544433 2 223333 2334444 4433333334444443 5677777
Q ss_pred CCCeEEEEEecC
Q 007757 549 KSCKVFRTLKCH 560 (590)
Q Consensus 549 ~t~~~~~~l~~h 560 (590)
.+++.......|
T Consensus 368 ~~g~~~~l~~~~ 379 (662)
T 3azo_A 368 VTGRARTIGARH 379 (662)
T ss_dssp TTCCEEEEESCC
T ss_pred CCCceEEeecCC
Confidence 777654443333
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=1.1e-13 Score=141.48 Aligned_cols=256 Identities=11% Similarity=0.084 Sum_probs=184.0
Q ss_pred CCcEEEEEccCCCeeEEEec------cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEec
Q 007757 321 DTKVKIWDVVNSGKCMRTYM------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNP 394 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~------~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~ 394 (590)
++.|.+||. .+++....+. .......++.+. +++.+++...++.|.+||..+++.+..+.....+..+.+.+
T Consensus 16 ~~~l~~~d~-~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDP-ATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEET-TTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred CceEEEEEC-CCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence 789999998 5666554431 122346778774 45555666667999999999999999887677777788766
Q ss_pred CCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccC-----CceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEee
Q 007757 395 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-----GAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~-----~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~~~~~~~ 468 (590)
++ .++++...++.|.+||+.+++....+.... .....+++ ..++.+++.. .++.|.+||+.+...+..+.
T Consensus 94 ~g---~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 94 DE---KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp TT---EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CC---eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 53 455555488999999999998887775432 14567777 3444444443 48899999999988887775
Q ss_pred cCCCCcccEEEEcCCCCEEEEEEcC----------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe
Q 007757 469 EPHMHSMPSISLHPNTNWLAAQSLD----------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~l~s~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
. ......++++|+|++++++..+ +.|.+||..+...........+ .....++|+|++++|+++.
T Consensus 170 ~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g----~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 170 I--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG----DWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp C--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT----CCCEEEEECTTSCEEEEES
T ss_pred c--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC----CCceeEEEecCCCEEEEEc
Confidence 3 3346788999999877776554 7899999987654432221111 2456799999999998876
Q ss_pred CCCcEEEEeCCCCeEEEE--EecCCCCEEEEEEcCCCCCEEEEE----eCCCcEEEeC
Q 007757 539 GEGKCWFWDWKSCKVFRT--LKCHEGVCIGCEWHPLEQSKVATC----GWDGLIKYWD 590 (590)
Q Consensus 539 ~dg~I~iwd~~t~~~~~~--l~~h~~~V~~v~~sp~~~~~l~s~----g~DG~I~iWD 590 (590)
. .|++||..+++.... +..+.....+++++|+++.++++. ..++.|.+||
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 5 899999988876421 122245689999999777777777 6789999997
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=1.1e-12 Score=143.61 Aligned_cols=298 Identities=15% Similarity=0.126 Sum_probs=199.6
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEcc-CCCeeEEEeccCCCceeEEEEe----cCCCEEEEEe
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV-NSGKCMRTYMGHSKAVRDISFC----NDGTKFLTAS 362 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fs----pdg~~l~s~s 362 (590)
..+++.++... ..+.++.|+|+ +++|++++.|+.|.+||+. .+.+.+..+... .....++|+ |+|+++++++
T Consensus 186 t~~v~~~i~~g-~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n 262 (567)
T 1qks_A 186 TYEIKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGA 262 (567)
T ss_dssp TCCEEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEE
T ss_pred CCeEEEEEeCC-CCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEE
Confidence 34566666543 35679999999 8999999999999999993 366677777643 346899999 6999888877
Q ss_pred C-CCeEEEEECCCCcEEEEccCCC----------CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-cccCC
Q 007757 363 Y-DKNIKYWDTETGQVIRTFSTGK----------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLG 430 (590)
Q Consensus 363 ~-Dg~I~vWd~~t~~~~~~~~~~~----------~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-~~h~~ 430 (590)
+ ++.|.|+|..+.+.+..+.... .+.+..+........+++.....|.|.++|.......... .....
T Consensus 263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~ 342 (567)
T 1qks_A 263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 342 (567)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccc
Confidence 6 4999999999999998876432 1122223223333456666677899999999876432221 12334
Q ss_pred ceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEeec-CC-CCcccEEE-EcCCCCEEEEEE--cCCeEEEEEccCc
Q 007757 431 AVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPVVIKYISE-PH-MHSMPSIS-LHPNTNWLAAQS--LDNQILIYSTRER 504 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~~~~~~~~-~~-~~~i~~i~-~sp~g~~l~s~s--~dg~I~iwd~~~~ 504 (590)
...++.|+|++++|+++. .++.|.++|+.+.+.+..+.. .. .++-..+. ++|++..+.+.+ .++.|.++|....
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 567889999999987665 578999999999987777654 11 11212333 588755554433 4589999998762
Q ss_pred ee----ecccccccCcccccceEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCC-----e-EEEEEec--------
Q 007757 505 FQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-------EGKCWFWDWKSC-----K-VFRTLKC-------- 559 (590)
Q Consensus 505 ~~----~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-------dg~I~iwd~~t~-----~-~~~~l~~-------- 559 (590)
.. ......+... ......+.++|++++|.+... ...|.++|+.+. . .+..+..
T Consensus 423 ~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 500 (567)
T 1qks_A 423 GHPDNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE 500 (567)
T ss_dssp TCTTTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred CCccccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCC
Confidence 11 1111222221 111223778999999998763 358999999877 2 2234431
Q ss_pred CCCCEEEEEEcCCCCCEEEEEe----CCCcEEEeC
Q 007757 560 HEGVCIGCEWHPLEQSKVATCG----WDGLIKYWD 590 (590)
Q Consensus 560 h~~~V~~v~~sp~~~~~l~s~g----~DG~I~iWD 590 (590)
....+..+.|+|++..+++|.. .++.|.|+|
T Consensus 501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 2357899999996555555543 378888876
No 181
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.63 E-value=7.4e-14 Score=158.72 Aligned_cols=279 Identities=11% Similarity=0.062 Sum_probs=175.5
Q ss_pred ceeEEecCCCCC-----eeEEEEcCCCCCEEEEEeCC---------CcEEEEEccCCCeeEEEeccCCCceeEEEEecCC
Q 007757 290 RLVHTWSGHTKG-----VSAIRFFPKYGHLILSAGMD---------TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG 355 (590)
Q Consensus 290 ~~v~~l~gH~~~-----V~~l~fsp~~g~~L~sgs~D---------g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg 355 (590)
++...+.+|... ...+.|+|+ |++|+.++.+ +.+.|||+ .++++ ..+..|...+...+|||||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~~~r~~~~~~~~~~d~-~~~~~-~~l~~~~~~~~~~~~SPdG 123 (740)
T 4a5s_A 47 NSSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDL-NKRQL-ITEERIPNNTQWVTWSPVG 123 (740)
T ss_dssp CEEEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEET-TTTEE-CCSSCCCTTEEEEEECSST
T ss_pred ceEEEEechhhhhhcccccceEECCC-CCEEEEEECCeeeEEEccceEEEEEEC-CCCcE-EEcccCCCcceeeEECCCC
Confidence 445566777643 244889999 8999888876 56779999 45554 3467788899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEccCCCCc-------------------eEEEEecCCCCCcEEEEEEcC-C------
Q 007757 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-------------------YVVKLNPDDDKQNILLAGMSD-K------ 409 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~lvsg~~d-g------ 409 (590)
+.|+.++ ++.|.+|++.++...+....+... ..+.|+|++ ..|+.++.| +
T Consensus 124 ~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg---~~la~~~~d~~~v~~~~ 199 (740)
T 4a5s_A 124 HKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG---TFLAYAQFNDTEVPLIE 199 (740)
T ss_dssp TCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS---SEEEEEEEECTTCCEEE
T ss_pred CEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC---CEEEEEEEcccCCceEE
Confidence 9999885 689999999988866543323221 125677765 345554321 1
Q ss_pred -----------------------------cEEEEECCC---Cc--eEEEEc------ccCCceeEEEEeCCCCEEEEEeC
Q 007757 410 -----------------------------KIVQWDMNT---KE--ITQEYD------QHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 410 -----------------------------~I~vwDl~t---~~--~~~~~~------~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
.|++||+.+ ++ ....+. +|...+..++|+|+++.++....
T Consensus 200 ~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~ 279 (740)
T 4a5s_A 200 YSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR 279 (740)
T ss_dssp EEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred EEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence 588899998 73 233443 27778999999999997665533
Q ss_pred ----CCcEEEEECCCCc----EE---EEeecCCCCccc-----EEEEcCCCCEEE-EEEc-C--CeEEEEEccCceeecc
Q 007757 450 ----DKSLRVWEFGIPV----VI---KYISEPHMHSMP-----SISLHPNTNWLA-AQSL-D--NQILIYSTRERFQLNK 509 (590)
Q Consensus 450 ----Dg~I~iwdl~~~~----~~---~~~~~~~~~~i~-----~i~~sp~g~~l~-s~s~-d--g~I~iwd~~~~~~~~~ 509 (590)
+..|++||+.++. +. ..+...+...+. .+.|+|+|+.|+ ..+. + ..|++|++.++....
T Consensus 280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~- 358 (740)
T 4a5s_A 280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF- 358 (740)
T ss_dssp SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-
T ss_pred CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-
Confidence 3479999988765 11 111123444443 789999999877 6653 3 458888887653321
Q ss_pred cccccCcccccceEEEEEcCCCCEEEE-EeC----CC--cEEEEeCCCCeEEEEEec----CCCCEEEEEEcCCCCCEEE
Q 007757 510 KKRFAGHIVAGYACQVNFSPDGRFVMS-GDG----EG--KCWFWDWKSCKVFRTLKC----HEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~s-gs~----dg--~I~iwd~~t~~~~~~l~~----h~~~V~~v~~sp~~~~~l~ 578 (590)
...+. ..+..+. .+|++.|+. ++. .+ .|+..++..+.....+.. ....+..+.|+|++..+++
T Consensus 359 --lT~g~---~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~ 432 (740)
T 4a5s_A 359 --ITKGT---WEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL 432 (740)
T ss_dssp --SCCSS---SCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred --cccCC---EEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEE
Confidence 11121 2233322 234665554 433 23 455556655544333432 2346788999995544444
Q ss_pred EEeC
Q 007757 579 TCGW 582 (590)
Q Consensus 579 s~g~ 582 (590)
+++.
T Consensus 433 ~~s~ 436 (740)
T 4a5s_A 433 RCSG 436 (740)
T ss_dssp EECS
T ss_pred EeCC
Confidence 5443
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=6.8e-13 Score=145.28 Aligned_cols=272 Identities=11% Similarity=0.089 Sum_probs=195.3
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC--CCcEEEEccCCCCceE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTGKIPYV 389 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~--t~~~~~~~~~~~~~~~ 389 (590)
+.++++...++.|.++|. .+++.+.++.. ...+..+.|+|||++|++++.|+.|.+||+. +++.+..+..+..+..
T Consensus 167 ~~~~V~~~~~~~V~viD~-~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDG-STYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 244 (567)
T ss_dssp GEEEEEETTTTEEEEEET-TTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred ceEEEEeCCCCeEEEEEC-CCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence 456777788999999999 67788877753 3457799999999999999999999999996 8899999888888888
Q ss_pred EEEe----cCCCCCcEEEEEEcCCcEEEEECCCCceEEEEccc-----------CCceeEEEEeCCCCEE-EEEeCCCcE
Q 007757 390 VKLN----PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-----------LGAVNTITFVDSNRRF-VTSSDDKSL 453 (590)
Q Consensus 390 ~~~~----~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h-----------~~~V~~i~~~p~~~~l-~s~s~Dg~I 453 (590)
+.++ |++ ..++++...++.|.++|..+.+.+..+... ...+..+..++++..+ +.....|.|
T Consensus 245 ia~s~~~~pDG--k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 245 IETSKMEGWED--KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEECCSTTCTT--TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred eEEccccCCCC--CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 8887 343 356666667799999999999988876521 1257788888876654 445667999
Q ss_pred EEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeeccccc-ccCcccccceEEEEEcCCC
Q 007757 454 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~v~~v~~spdg 531 (590)
.++|+...................+.|+|++++|++++ .++.|.++|+.++........ -... +.+....+ ++|++
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P-hpg~g~~~-~~p~~ 400 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP-HPGRGANF-VHPTF 400 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB-CCTTCEEE-EETTT
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC-CCccceee-ECCCC
Confidence 99999776433332223344567889999999987776 568999999998765544332 1111 11111112 68875
Q ss_pred CEE-EEEe-CCCcEEEEeCCC-------CeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC-------CCcEEEeC
Q 007757 532 RFV-MSGD-GEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-------DGLIKYWD 590 (590)
Q Consensus 532 ~~l-~sgs-~dg~I~iwd~~t-------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~-------DG~I~iWD 590 (590)
..+ +++. .++.|.++|..+ .+.+.++......-..+..+| ++.+|..... .++|.++|
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEE
Confidence 544 4443 568999999988 778888886644434577899 5555555442 34787775
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=2.5e-13 Score=136.11 Aligned_cols=241 Identities=9% Similarity=0.028 Sum_probs=167.8
Q ss_pred CeeEEEeccCCCceeEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEccC-CCCceEEEEecCCCCCcEEEEEEcCCc
Q 007757 333 GKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKK 410 (590)
Q Consensus 333 ~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~ 410 (590)
+..+..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+.. ...+..+.+.+++ .++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg---~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG---HLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC---CEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC---cEEEEecCCCe
Confidence 344555666677789999999998 7778888999999999988 444433 3445566666643 56666666789
Q ss_pred EEEEECCCCceEEEEccc----CCceeEEEEeCCCCEEEEEeC-----------------CCcEEEEECCCCcEEEEeec
Q 007757 411 IVQWDMNTKEITQEYDQH----LGAVNTITFVDSNRRFVTSSD-----------------DKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~h----~~~V~~i~~~p~~~~l~s~s~-----------------Dg~I~iwdl~~~~~~~~~~~ 469 (590)
|.+||..+++........ ...++.++++|+|+++++.+. .+.|..++.. +. +..+.
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~- 168 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI- 168 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE-
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee-
Confidence 999999888765443321 235678999999998887321 2456556554 33 33332
Q ss_pred CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc-CceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 470 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
........++|+|+++.|++.+.++.|.+|++. ++........+.. ....+..++++++|+++++. ++.|.+||.
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV--EPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC--SSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC--CCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 345567889999999999777778999999986 3222011112211 12344568999999977666 788999997
Q ss_pred CCCeEEEEEecCCCCEEEEEEc-CCCCCEEEEEeCCCcEEE
Q 007757 549 KSCKVFRTLKCHEGVCIGCEWH-PLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 549 ~t~~~~~~l~~h~~~V~~v~~s-p~~~~~l~s~g~DG~I~i 588 (590)
. ++.+..+..+.. +.+++|. | ++..|+.++.++.+++
T Consensus 245 ~-g~~~~~~~~~~~-~~~~~f~~~-d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 245 D-GDELGRVLTPQT-TSNLCFGGP-EGRTLYMTVSTEFWSI 282 (296)
T ss_dssp T-SCEEEEEECSSC-CCEEEEEST-TSCEEEEEETTEEEEE
T ss_pred C-CCEEEEEECCCC-ceeEEEECC-CCCEEEEEcCCeEEEE
Confidence 6 888888888877 8999995 6 6667888887776554
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=3.6e-13 Score=134.96 Aligned_cols=245 Identities=11% Similarity=0.123 Sum_probs=174.7
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
..+..+..+.....+++|+|+ ++ +++++..++.|.+|+. ..+ ...+..+...+.+++|+++|+++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSD-DGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEET-TSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEEC-CCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 344566677778899999999 66 8888989999999998 344 667777888899999999999887777779999
Q ss_pred EEECCCCcEEEEccC-----CCCceEEEEecCCCCCcEEEE----EE-------------cCCcEEEEECCCCceEEEEc
Q 007757 369 YWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLA----GM-------------SDKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 369 vWd~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lvs----g~-------------~dg~I~vwDl~t~~~~~~~~ 426 (590)
+||..+++....... ...+..+.+.+++ +++++ |+ ..+.|+.++.. ++. ..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G---~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDG---SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI 168 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTS---CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC---CEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee
Confidence 999988876544321 1123345665543 56665 32 13567777766 443 3444
Q ss_pred ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECC-CCcE---EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG-IPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~-~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
.+....+.++|+|+++.|++.+.++.|.+|++. .+.. ...+ ......+.+++++++|+++++. ++.|.+|+..
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 566778999999999999777888999999986 3333 2333 3455567889999999866665 8899999986
Q ss_pred CceeecccccccCcccccceEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 007757 503 ERFQLNKKKRFAGHIVAGYACQVNF-SPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~-spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
. ..+. .+..+ .. +.+++| +|+++.|++++.+ .|.-++..+.++.
T Consensus 246 g-~~~~---~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 246 G-DELG---RVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp S-CEEE---EEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred C-CEEE---EEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 3 3332 22222 22 567888 6899999988876 4666677665543
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=2.1e-13 Score=154.22 Aligned_cols=243 Identities=10% Similarity=0.048 Sum_probs=167.4
Q ss_pred CCCceeEEEEecCCCEEEEEeCCC-----eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCc------
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDK-----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK------ 410 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg-----~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~------ 410 (590)
|...+..++|||||++|+.++.++ .|++||+.+++.+...........+.|++++ ..|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg---~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG---KGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS---SEEEEEECCCCSSCCSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC---CEEEEEEECCccccccc
Confidence 445688999999999998776543 8999999999887643322224457777765 45666666655
Q ss_pred ----------EEEEECCCCce--EEEEc--ccCCceeEEEEeCCCCEEEEEeC-----CCcEEEEECCC------Cc-EE
Q 007757 411 ----------IVQWDMNTKEI--TQEYD--QHLGAVNTITFVDSNRRFVTSSD-----DKSLRVWEFGI------PV-VI 464 (590)
Q Consensus 411 ----------I~vwDl~t~~~--~~~~~--~h~~~V~~i~~~p~~~~l~s~s~-----Dg~I~iwdl~~------~~-~~ 464 (590)
|++|++.++.. ...+. .|...+..+.|+|+|++|+.++. +..|++||+.. +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988752 22333 34556889999999999988764 56899999976 42 23
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcC----CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC
Q 007757 465 KYISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
..+.. +...+.. .|+|+|..|+..+.. +.|.+|++.+.... ....+..+.....+..++|++++.++++...+
T Consensus 280 ~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 280 VKLID-NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEEEC-SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EEeeC-CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 44433 3333433 588899988877654 35999998765311 11222233222356678898888888888888
Q ss_pred Cc--EEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEeC
Q 007757 541 GK--CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 590 (590)
Q Consensus 541 g~--I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~---DG~I~iWD 590 (590)
+. |++|++.+++.+..+..+.+.+..+.++|++..++++.+. .++|.+||
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 74 6777887888888888888888999999954444444443 46777775
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=8.5e-13 Score=131.46 Aligned_cols=244 Identities=14% Similarity=0.100 Sum_probs=183.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCC-CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCC--ce
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI--PY 388 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~--~~ 388 (590)
+++|++++.++.|.+||. .+++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..+.. ..
T Consensus 5 ~~~lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CEEEEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CcEEEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 589999999999999998 6899999998776 5789999999999888 45788999999 8999999987533 33
Q ss_pred EEEEecCCCCCcEEEEEEc-CCcEEEEECCCCceEEEEcc------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 007757 389 VVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQ------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 461 (590)
Q Consensus 389 ~~~~~~~~~~~~~lvsg~~-dg~I~vwDl~t~~~~~~~~~------h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~ 461 (590)
...+.++ ++++++.+. ++.|..+|. +++.+..+.. +......+.+.++++++++.+.++.|.+||.. +
T Consensus 81 ~~~~~~d---G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 81 TARILPD---GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEECTT---SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred ccEECCC---CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 3444443 367777776 788888886 7777776642 22345667889999999999999999999998 7
Q ss_pred cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccc--cCcccccceEEEEEcCCCCEEEEEeC
Q 007757 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF--AGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
+.+..+... ..+.++...++++++++++.++.|..+|..++..+...... .+. ....+..+...++|+++++...
T Consensus 156 ~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~-~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 156 QLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV-QLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp CEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC-CCSEEEEEEECTTSCEEEEEEC
T ss_pred CEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc-cccccccceEcCCCCEEEEecc
Confidence 777776542 45667888999999999888889999999877665444321 111 1234677889999999888742
Q ss_pred C--------CcEEEEeC-CCCeEEEEEecCC--CCEEEE
Q 007757 540 E--------GKCWFWDW-KSCKVFRTLKCHE--GVCIGC 567 (590)
Q Consensus 540 d--------g~I~iwd~-~t~~~~~~l~~h~--~~V~~v 567 (590)
. +..+++.+ .+++.+.++..+. +.+.++
T Consensus 233 g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 233 GHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp TTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred CccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 1 23455555 6889998887654 344444
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=4.5e-12 Score=128.93 Aligned_cols=243 Identities=13% Similarity=0.122 Sum_probs=165.0
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC----C
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----K 365 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D----g 365 (590)
.....+.++...+.+++|+|+ +++++++..++.|.+||. ..++.......+...+.+++|+++|+++++...+ +
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINP-ETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECT-TTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred ceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeC-CCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 445667778888999999998 888888888999999998 4555544444567889999999999988877666 6
Q ss_pred eEEEEECCCCcEEEEcc---CCCCceEEEEecCCCCCcEEEEEEc------CCcEEEEECCCCceEEEEcccCCceeEEE
Q 007757 366 NIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAVNTIT 436 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~------dg~I~vwDl~t~~~~~~~~~h~~~V~~i~ 436 (590)
.|.+||..++.....+. ....+..+.+.+++ .++++... .+.|+.+|..+++..... .+...+..++
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~ 188 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG---GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIA 188 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS---CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEE
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCC---CEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceE
Confidence 89999998887653332 22334455665543 45555443 367778887765544332 3445678999
Q ss_pred EeCCCCEEE-EEeCCCcEEEEECCC-CcEEEE-----e-ecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec
Q 007757 437 FVDSNRRFV-TSSDDKSLRVWEFGI-PVVIKY-----I-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 437 ~~p~~~~l~-s~s~Dg~I~iwdl~~-~~~~~~-----~-~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
|+|+++.|+ +.+.++.|.+|++.. +..+.. . .......+..++++++|+++++...++.|.+|+... ..+.
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~ 267 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIG 267 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEE
Confidence 999998654 455678999999863 222211 1 111124677899999999888877889999999843 3222
Q ss_pred cccccc---CcccccceEEEEEcCCCCEEEEEeCCC
Q 007757 509 KKKRFA---GHIVAGYACQVNFSPDGRFVMSGDGEG 541 (590)
Q Consensus 509 ~~~~~~---~~~~~~~v~~v~~spdg~~l~sgs~dg 541 (590)
...... ++ ...+..++|+|+++.|++++.++
T Consensus 268 ~~~~~~~~~g~--~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 268 QILIPGRDEGH--MLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEECTTGGGTC--SCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEcCCCcccc--ccCcceEEECCCCCEEEEEeCcc
Confidence 221110 11 01466799999988877666553
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=4.7e-14 Score=146.65 Aligned_cols=249 Identities=10% Similarity=-0.015 Sum_probs=164.9
Q ss_pred EccCCCeeEEEeccCCCc-----eeEEEEecCCCEEEEEeCC---CeEEEEECCCCcEEEEccCCCCce-EEEEecCCCC
Q 007757 328 DVVNSGKCMRTYMGHSKA-----VRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDK 398 (590)
Q Consensus 328 d~~~~~~~~~~~~~h~~~-----V~~l~fspdg~~l~s~s~D---g~I~vWd~~t~~~~~~~~~~~~~~-~~~~~~~~~~ 398 (590)
|. .++..+..+..+... +.+++|+|+|++|+.+... ..|.+||+.+++............ ...|+|++
T Consensus 16 d~-~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-- 92 (396)
T 3c5m_A 16 DS-DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-- 92 (396)
T ss_dssp CT-TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS--
T ss_pred cC-CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC--
Confidence 44 466666666655443 7889999999998877543 478899999887655443332222 25667654
Q ss_pred CcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeE-------------------EEEeCCCCEEEEE-----eCCCcEE
Q 007757 399 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT-------------------ITFVDSNRRFVTS-----SDDKSLR 454 (590)
Q Consensus 399 ~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~-------------------i~~~p~~~~l~s~-----s~Dg~I~ 454 (590)
..|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|+
T Consensus 93 -~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 93 -RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp -SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred -CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 57888888889999999998876666544443222 3456666665543 3566899
Q ss_pred EEECCCCcEEEEeecCCCCcccEEEEcC-CCCEEEEEEcC------CeEEEEEccCceeecccccccCcccccceEEEEE
Q 007757 455 VWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
+||+.++...... .+...+..+.|+| ++..|+..+.+ ..|.+|++....... +..+.....+..++|
T Consensus 172 ~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 172 KVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK----IKEHAEGESCTHEFW 245 (396)
T ss_dssp EEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE----SSCCCTTEEEEEEEE
T ss_pred EEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE----eeccCCCccccceEE
Confidence 9999887655444 2455688999999 78877776654 358888886543211 111111234667899
Q ss_pred cCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEecCCCCEEEEEEcC-CCCCEEEEEe----------------CCCc
Q 007757 528 SPDGRFVMSGDGE-----GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP-LEQSKVATCG----------------WDGL 585 (590)
Q Consensus 528 spdg~~l~sgs~d-----g~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp-~~~~~l~s~g----------------~DG~ 585 (590)
+|+|++|+.++.+ +.|++||+.+++....... .. .. +.|+| ++. +|++++ .++.
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNIENDPF 321 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSS-EEEEEECCC----------CCCCCCE
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCc-eEEEecCCcceeeccccccccCCCCc
Confidence 9999987766543 4499999998876543322 22 33 89998 654 676654 2467
Q ss_pred EEEeC
Q 007757 586 IKYWD 590 (590)
Q Consensus 586 I~iWD 590 (590)
|.+||
T Consensus 322 i~~~d 326 (396)
T 3c5m_A 322 LYVLN 326 (396)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88885
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=6.8e-13 Score=130.56 Aligned_cols=240 Identities=12% Similarity=0.089 Sum_probs=167.5
Q ss_pred CeeEEEEcCCCCCEEE-EEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE
Q 007757 301 GVSAIRFFPKYGHLIL-SAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~-sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
...+|++.++ +++++ +.+.++.|.+|+. ...........+...+.+|+++++|+++++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~- 100 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLAT-GSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT- 100 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecC-CCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-
Confidence 6789999998 78777 5477899999987 23322222223445788999999998666655 899999998766543
Q ss_pred EccCC--CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEE
Q 007757 380 TFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 380 ~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
.+... ..+..+.+.++ +.++++...++.|.+|+..+.............+.+|++.++++.+++...++.|.+||
T Consensus 101 ~~~~~~~~~p~~i~~~~~---g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQ---GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp ECCCCSCSSEEEEEECTT---CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eeecCCcCCCcceEECCC---CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 23222 34556666553 35777777789999998766544333223345678999999999888877788999999
Q ss_pred CCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEE
Q 007757 458 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 537 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg 537 (590)
.......... ......+.+++++++|.++++...++.|.+|+........ .... . ...+..++++++|+++++.
T Consensus 178 ~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--~~~~-~--~~~p~~i~~~~~g~l~v~~ 251 (270)
T 1rwi_B 178 AESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--LPFT-G--LNTPLAVAVDSDRTVYVAD 251 (270)
T ss_dssp TTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE--CCCC-S--CSCEEEEEECTTCCEEEEE
T ss_pred cCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee--eccC-C--CCCceeEEECCCCCEEEEE
Confidence 8776544322 2233567899999999777777778899999986643221 1111 1 1356789999999988888
Q ss_pred eCCCcEEEEeCCCCeE
Q 007757 538 DGEGKCWFWDWKSCKV 553 (590)
Q Consensus 538 s~dg~I~iwd~~t~~~ 553 (590)
..++.|+++++...+.
T Consensus 252 ~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 252 RGNDRVVKLTSLEHHH 267 (270)
T ss_dssp GGGTEEEEECCCGGGS
T ss_pred CCCCEEEEEcCCCccc
Confidence 8999999999876543
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=2.7e-11 Score=120.46 Aligned_cols=275 Identities=11% Similarity=0.043 Sum_probs=186.4
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEE-EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
.....+.+|++.++ +.++++...++.|.+|+.. ++... .+..+...+.++++.++|+++++...++.|.+||.. +
T Consensus 17 ~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSED-GKVWFTQHKANKISSLDQS--GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTT-SCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCC-CCEEEEcCCCCeEEEECCC--CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 44567899999998 8888877778999999983 44333 233344678999999999887777768899999988 6
Q ss_pred cEEEEc-c-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE-EcccCCceeEEEEeCCCCEEEEEeCCCc
Q 007757 376 QVIRTF-S-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~-~~~h~~~V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+..... . ....+..+.+.+. +.++++...++.|..||.. ++.... +......+.++++.++++.+++...++.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLN---GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECST---TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred CeEEecCCCCCCCCccceECCC---CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 553222 1 1234445555543 3566666668899999988 655432 2334567899999999997777777889
Q ss_pred EEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
|..|+. ...............+..+++++++.++++....+.|.+|+.... ... .. .... ...+..++++++|+
T Consensus 169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~~~-~~-~~~~--~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-ISE-YD-IPTP--NARPHAITAGKNSE 242 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-EEE-EE-CSST--TCCEEEEEECSTTC
T ss_pred EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-EEE-EE-CCCC--CCCceEEEECCCCC
Confidence 999998 444433222223456789999999987776666778999998322 211 11 1111 24567899999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEE-EecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 533 FVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+.++...++.|..||. +++.... +......+.++++.+ ++.++++.. . .|..+
T Consensus 243 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 243 IWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK-DGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT-TSCEEEECS-S-EEEEE
T ss_pred EEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC-CCCEEEEcc-C-ceEEe
Confidence 7777767789999998 4544322 233345678899998 555555544 4 55544
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=2.2e-12 Score=145.92 Aligned_cols=244 Identities=12% Similarity=0.098 Sum_probs=164.8
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCCC-----cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCe-----
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMDT-----KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 366 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~Dg-----~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~----- 366 (590)
+|...+..++|+|+ |++|+.++.++ .|++||+ .+++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~-~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKV-DGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEET-TTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEEC-CCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccc
Confidence 46667899999999 88887665543 8999999 567665533222 23778999999999999988766
Q ss_pred -----------EEEEECCCCcE--EEEccCC-CC--ceEEEEecCCCCCcEEEEEEc-----CCcEEEEECCC------C
Q 007757 367 -----------IKYWDTETGQV--IRTFSTG-KI--PYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMNT------K 419 (590)
Q Consensus 367 -----------I~vWd~~t~~~--~~~~~~~-~~--~~~~~~~~~~~~~~~lvsg~~-----dg~I~vwDl~t------~ 419 (590)
|++|++.+++. ...+... +. .....+++++ ..|+.++. +..|++||+.+ +
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg---~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG---RYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS---CEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC---CEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 99999998762 2222222 22 3455566544 34444443 57899999987 5
Q ss_pred c-eEEEEcccCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCCc--EEEEeecCCC-CcccEEEEcCCCCEEEEEE
Q 007757 420 E-ITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPV--VIKYISEPHM-HSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 420 ~-~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg----~I~iwdl~~~~--~~~~~~~~~~-~~i~~i~~sp~g~~l~s~s 491 (590)
. ....+..+...+.. .|++++..|+..+..+ .|.+||+..+. ....+..... ..+..++|++++.++++..
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 3 35556566666655 4888888887766533 59999998763 1233333223 3678889988788888888
Q ss_pred cCCe--EEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEE-e---CCCcEEEEeCCCCe
Q 007757 492 LDNQ--ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-D---GEGKCWFWDWKSCK 552 (590)
Q Consensus 492 ~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s---~dg~I~iwd~~t~~ 552 (590)
.++. |.+|++.++..... +..+ .+.+..++++|++..|+.. + ..+.|++||+.+++
T Consensus 355 ~~g~~~l~~~~~~~g~~~~~---l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLKI---FPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTEEEEEEEETTTCCEEEE---ECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCEEEEEEEECCCCCEEEe---cCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8885 55667644443322 2223 4567788999999766533 2 35789999998877
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.54 E-value=1.5e-12 Score=133.12 Aligned_cols=231 Identities=12% Similarity=0.155 Sum_probs=153.3
Q ss_pred CCeeEEEEcCCCCCEEEEEeCC---C--cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC----------
Q 007757 300 KGVSAIRFFPKYGHLILSAGMD---T--KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---------- 364 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~D---g--~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D---------- 364 (590)
..+.+++|+|+ |+.|+.++.+ + .|.+|++ ..++....... .. +..++|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpD-g~~la~~~~~~~~~~~~l~~~~~-~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPD-GKKIAFMRANEEKKVSEIWVADL-ETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTT-SSEEEEEEEETTTTEEEEEEEET-TTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCC-CCEEEEEEeccCCCcceEEEEEC-CCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 56889999999 8888776654 3 3777787 45555444433 34 9999999999999888743
Q ss_pred -----------------CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC---------cEEEEECCC
Q 007757 365 -----------------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK---------KIVQWDMNT 418 (590)
Q Consensus 365 -----------------g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg---------~I~vwDl~t 418 (590)
..|.+||+.+++.+..+... ....+.+++++ +++++..++ .|+++| +
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg----~~~~~~~~~~~~~~~~~~~l~~~d--~ 207 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK----IVVNVPHREIIPQYFKFWDIYIWE--D 207 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE----EEEEEECCCSSCCSSCCEEEEEEE--T
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe----EEEEEecccccccccccccEEEeC--C
Confidence 57999999998874444333 55667777643 666665432 455556 5
Q ss_pred CceEEEEcccCCceeEEEEeCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeecCCCCcccE-EEEcCCCCEEEE
Q 007757 419 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPS-ISLHPNTNWLAA 489 (590)
Q Consensus 419 ~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~i~~-i~~sp~g~~l~s 489 (590)
++.. .+..+ ..+..+ +|+|++|+.++.+ ..|.+|| .+. ...+...+...+.. +.|+ ++ ++++
T Consensus 208 ~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 208 GKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp TEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred CceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEE
Confidence 5443 33334 445444 9999998887754 3677787 333 34444445667776 8999 88 8899
Q ss_pred EEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcE-EEEeCCCCeEEEEEecCC
Q 007757 490 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC-WFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I-~iwd~~t~~~~~~l~~h~ 561 (590)
++.++.++|| +.++.. ..+..+ ...+..++|+| .++++++.++.. .||.+. ++ ...+..|.
T Consensus 279 ~~~~~~~~l~-~~~g~~----~~~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n 340 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEI----KPIAKG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYN 340 (347)
T ss_dssp EEETTEEEEE-EESSSE----EEEECS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTT
T ss_pred EecCCcEEEE-EcCCce----EEEecC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEecccc
Confidence 9999999999 874322 112222 35677899999 677777777654 666655 44 34454444
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=2e-12 Score=127.21 Aligned_cols=235 Identities=6% Similarity=-0.001 Sum_probs=162.2
Q ss_pred ceeEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEcc-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE
Q 007757 345 AVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 345 ~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~ 422 (590)
...+++++++|++++ +.+.++.|.+|+..+........ ....+..+.+.+++ .++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g---~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG---TVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC---CEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC---CEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999998777 44678999999987655432211 12345566666543 4555544 889999998776543
Q ss_pred EEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 423 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
.........+.++++.++++.+++...++.|.+|+.......... ......+.+++++++++++++...++.|.+|+..
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 222223357899999999998888778899999987655433222 2233467899999999977776678899999987
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
....... .. .. ...+..++++++|.++++...++.|.+|+............+...+.++++++ ++.++++...
T Consensus 180 ~~~~~~~--~~-~~--~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~ 253 (270)
T 1rwi_B 180 SNNQVVL--PF-TD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRG 253 (270)
T ss_dssp TCCEEEC--CC-SS--CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGG
T ss_pred CCceEee--cc-cC--CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECC
Confidence 6543211 11 11 14567899999998888777889999999876554332223335689999999 5678888889
Q ss_pred CCcEEEeC
Q 007757 583 DGLIKYWD 590 (590)
Q Consensus 583 DG~I~iWD 590 (590)
++.|++++
T Consensus 254 ~~~v~~~~ 261 (270)
T 1rwi_B 254 NDRVVKLT 261 (270)
T ss_dssp GTEEEEEC
T ss_pred CCEEEEEc
Confidence 99999985
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=3.8e-11 Score=124.80 Aligned_cols=269 Identities=9% Similarity=-0.034 Sum_probs=180.0
Q ss_pred cCCCCCEEEEEeC--CC---cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe----------CCCeEEEEEC
Q 007757 308 FPKYGHLILSAGM--DT---KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDT 372 (590)
Q Consensus 308 sp~~g~~L~sgs~--Dg---~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s----------~Dg~I~vWd~ 372 (590)
.|+ +++++++.. .. +|.++|. .+++.+.++.....+ .++|+|||++|+++. .++.|.+||+
T Consensus 29 ~~~-~~~~yv~~~~~~~~~~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 29 GAD-GRRSYINLPAHHSAIIQQWVLDA-GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCC-CCEEEEeCCcccCCccEEEEEEC-CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 355 566666553 22 7899999 577777777654444 999999999999886 3678999999
Q ss_pred CCCcEEEEccCC--------CCceEEEEecCCCCCcEEEEEE-c-CCcEEEEECCCCceEEE-EcccCCceeEEEEeCCC
Q 007757 373 ETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDSN 441 (590)
Q Consensus 373 ~t~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~vwDl~t~~~~~~-~~~h~~~V~~i~~~p~~ 441 (590)
.+.+.+..+..+ ..+..+.++|++ .+|+++. . ++.|.++| .+++.+.. +... + |+.+.|++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG---~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~ 176 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNN---ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGA 176 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCC---CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCC
Confidence 999988877654 345567777765 3555554 3 58899999 99988877 5422 2 24455554
Q ss_pred -CEEEEEeCCCcEEEEECCCCcEEEEeec----CCCCc-ccEEEEcCCCCEEEEEEcCCeEEEEEccCcee--ecccccc
Q 007757 442 -RRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQ--LNKKKRF 513 (590)
Q Consensus 442 -~~l~s~s~Dg~I~iwdl~~~~~~~~~~~----~~~~~-i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~ 513 (590)
+.+++.+.||.+.++|. .+........ ....+ .....+.+++..++..+..+.+.+.|+..... ...+...
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~ 255 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeec
Confidence 46677888999999999 7666533220 11111 12344566665555555788999999865321 1111100
Q ss_pred cC-----cccccceEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEE
Q 007757 514 AG-----HIVAGYACQVNFSPDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 514 ~~-----~~~~~~v~~v~~spdg~~l~sgs~----------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
.. .........+.++|+++.|+++.. .+.|.++|..+++.+.++.... ...+++|+|++..+++
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~ 334 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLY 334 (373)
T ss_pred CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEE
Confidence 00 000122334789999998887653 3579999999999999997433 5789999995443777
Q ss_pred EEe-CCCcEEEeC
Q 007757 579 TCG-WDGLIKYWD 590 (590)
Q Consensus 579 s~g-~DG~I~iWD 590 (590)
++. .++.|.+||
T Consensus 335 v~~~~~~~V~ViD 347 (373)
T 2mad_H 335 ALSAGTEVLHIYD 347 (373)
T ss_pred EEcCCCCeEEEEE
Confidence 777 489999987
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=1.9e-13 Score=154.22 Aligned_cols=241 Identities=9% Similarity=-0.030 Sum_probs=156.4
Q ss_pred cCCCceeEEEEecCCCEEEE-----EeCCCeEEEEECCCCcEE-EEccCCCCceEEEEecCCCCCcEEEEEEcCCc----
Q 007757 341 GHSKAVRDISFCNDGTKFLT-----ASYDKNIKYWDTETGQVI-RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK---- 410 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s-----~s~Dg~I~vWd~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~---- 410 (590)
+|...+..++|||||++|+. |+.+..|++||+.+++.+ ...........+.|++++ ..|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg---~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS---KGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTS---SEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCC---CEEEEEEecCCCCCc
Confidence 45557999999999999984 344568999999999865 211111112456777765 46777777665
Q ss_pred ---------EEEEECCCCc----eEEEEcccCCceeEEEEeCCCCEEEEEeCCC----cEEEEECCCCcEEEEeecCCCC
Q 007757 411 ---------IVQWDMNTKE----ITQEYDQHLGAVNTITFVDSNRRFVTSSDDK----SLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 411 ---------I~vwDl~t~~----~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg----~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
|++|++.++. ++.....|...+.++.|+|+|++|+.++.++ .|++|+....... .+.. +..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~-~~~ 272 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVK-GVG 272 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEE-CSS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eeec-CCC
Confidence 9999999876 3333334556789999999999998887666 6777766544433 3332 333
Q ss_pred cccEEEEcCCCCEEEEEEc----CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 474 SMPSISLHPNTNWLAAQSL----DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
.+....+ +++. |+..+. ++.|.+|++.+..... ...+..+.....+..++|+ ++.++++...++..+||.+.
T Consensus 273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC-CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 4455555 5666 544443 5789999987653210 1122222112345667887 77788888889988887654
Q ss_pred -CCeEEEEEecC-CCCEEEEEEcCCCCCEEEEEeC---CCcEEEeC
Q 007757 550 -SCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 590 (590)
Q Consensus 550 -t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~---DG~I~iWD 590 (590)
+++....+..+ .+.+..+.++|++..++++.+. .++|++||
T Consensus 349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 46666666655 5667788899954444444433 46788875
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=5.9e-11 Score=123.37 Aligned_cols=252 Identities=7% Similarity=-0.048 Sum_probs=173.1
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEEccCCCeeEEEeccC-------CCceeEEEE
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISF 351 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~f 351 (590)
.+++.++..-..+ .++|+|+ +++|+.+. .++.|.+||. .+.+.+..+.-. ...-..+.|
T Consensus 57 ~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~-~t~~~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEEC-CCCcEEEEEECCCccccccCCCccceEE
Confidence 3455666554444 9999999 78777775 3678999999 566666655321 123458999
Q ss_pred ecCCCEEEEEeC--CCeEEEEECCCCcEEEE-ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc--
Q 007757 352 CNDGTKFLTASY--DKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-- 426 (590)
Q Consensus 352 spdg~~l~s~s~--Dg~I~vWd~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~-- 426 (590)
+|||++|++++. ++.|.++| .+++.+.. +..+.. +.+.+.+. ..+++.+.||.+.++|. +++.+....
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~--~~~~~~~~dg~~~~vd~-~g~~~~~~~~~ 205 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAP--STFYLLCAQGGLAKTDH-AGGAAGAGLVG 205 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCC--ceEEEEcCCCCEEEEEC-CCcEEEEEecc
Confidence 999999999875 47899999 99999888 765432 44445443 56778888999999999 887664322
Q ss_pred ---ccCCc-eeEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEeecC---------CCCcccEEEEcCCCCEEEEEE
Q 007757 427 ---QHLGA-VNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEP---------HMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 427 ---~h~~~-V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~~---------~~~~i~~i~~sp~g~~l~s~s 491 (590)
....+ .....+.+++..++..+..+.+.+.|+.... .+..+... .......+.++|+++.+++..
T Consensus 206 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~ 285 (373)
T 2mad_H 206 AMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT 285 (373)
T ss_pred ccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEe
Confidence 11112 1234566666665555578899999986542 22222110 012233478899998888765
Q ss_pred c----------CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEE
Q 007757 492 L----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 492 ~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~t~~~~~~l 557 (590)
. .+.|.++|+.+...+..+.. ......++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCCEEEEEEEC------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 3 35799999988766544421 12355799999999 777777 5899999999999999884
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=4.9e-12 Score=130.74 Aligned_cols=272 Identities=14% Similarity=0.056 Sum_probs=184.7
Q ss_pred EcCCCCCEEEEEeC-----CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe----------CCCeEEEEE
Q 007757 307 FFPKYGHLILSAGM-----DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWD 371 (590)
Q Consensus 307 fsp~~g~~L~sgs~-----Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s----------~Dg~I~vWd 371 (590)
..|+ ++.+++... ++.|.+.|. .+.+.+.++..-..+ .++++|||++|++++ .++.|.+||
T Consensus 40 ~~pd-~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 40 PAPD-ARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCC-TTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cCCC-CCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 3566 666666654 679999999 688888888755555 499999999988776 367899999
Q ss_pred CCCCcEEEEccCC--------CCceEEEEecCCCCCcEEEEEE-c-CCcEEEEECCCCceEEEEcccCCceeEEEEeCCC
Q 007757 372 TETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN 441 (590)
Q Consensus 372 ~~t~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~ 441 (590)
+.+++.+..+..+ ..+..+.+++++ ..++++. . ++.|.++|+.+++.+.++.... . ...+....
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG---k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~ 189 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG---KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAP 189 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEET
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCC---CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCC
Confidence 9999999887653 256678888865 3455554 3 6899999999999998885322 1 22333345
Q ss_pred CEEEEEeCCCcEEEEECCC-CcEEEEee---cCCCCcc-cEEEEc-CCCCEEEEEEcCCeEEEEEccCce--eecccccc
Q 007757 442 RRFVTSSDDKSLRVWEFGI-PVVIKYIS---EPHMHSM-PSISLH-PNTNWLAAQSLDNQILIYSTRERF--QLNKKKRF 513 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~-~~~~~~~~---~~~~~~i-~~i~~s-p~g~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~ 513 (590)
+.|++.+.||.+.+.++.. ++...... .....++ ....|. ++|++++ .+.+|.|+++|+.+.. .......+
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~ 268 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEAL 268 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESS
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecc
Confidence 6788888999999999876 44332211 1111222 224554 5665544 5668999999986543 12111101
Q ss_pred c-----CcccccceEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEE
Q 007757 514 A-----GHIVAGYACQVNFSPDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 514 ~-----~~~~~~~v~~v~~spdg~~l~sgs~----------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 578 (590)
. ..........++++++++.|+.... ...|.++|+.+++.+..+... ..+.+|++++++..+|+
T Consensus 269 ~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 269 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLY 347 (386)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEE
T ss_pred ccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEE
Confidence 0 0111122234788999998887643 257999999999999998753 35789999996544555
Q ss_pred E-EeCCCcEEEeC
Q 007757 579 T-CGWDGLIKYWD 590 (590)
Q Consensus 579 s-~g~DG~I~iWD 590 (590)
+ ...++.|.++|
T Consensus 348 ~tn~~~~~VsViD 360 (386)
T 3sjl_D 348 ALSTGDKTLYIHD 360 (386)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCeEEEEE
Confidence 5 55689999886
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=9.2e-12 Score=128.65 Aligned_cols=266 Identities=11% Similarity=0.073 Sum_probs=183.2
Q ss_pred cceeEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEEccCCCeeEEEeccC-------CCceeEEEE
Q 007757 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISF 351 (590)
Q Consensus 289 ~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~f 351 (590)
.+++.++..-..+ .++++|+ +++|++++ .++.|.+||. .+.+.+.++.-. ...-..+.|
T Consensus 69 ~~v~~~I~vG~~P--~va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~-~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADD-GSFIAHASTVFSRIARGERTDYVEVFDP-VTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CeEEEEEECCCCC--cEEECCC-CCEEEEEcccccccccCCCCCEEEEEEC-CCCeEEEEEECCCccccccCCCCceEEE
Confidence 4566666654555 4999999 66665554 3678999999 677777776422 124668999
Q ss_pred ecCCCEEEEEeC--CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-CceEEEEccc
Q 007757 352 CNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQH 428 (590)
Q Consensus 352 spdg~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-~~~~~~~~~h 428 (590)
+|||++|+++.. ++.|.++|+.+++.+.++..... ..+.|.+ ...+++.+.||++.+.++.+ ++.......+
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g--~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~ 219 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTA--PDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEE--TTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCC--CceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence 999999998874 68999999999999999876542 2333433 25677889999999999986 6654332222
Q ss_pred C----Cce-eEEEEe-CCCCEEEEEeCCCcEEEEECCCCc--EEEEeec-------C--CCCcccEEEEcCCCCEEEEEE
Q 007757 429 L----GAV-NTITFV-DSNRRFVTSSDDKSLRVWEFGIPV--VIKYISE-------P--HMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 429 ~----~~V-~~i~~~-p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~-------~--~~~~i~~i~~sp~g~~l~s~s 491 (590)
. .++ ....|. ++|+++ ..+.+|.|++.|+.... .+..+.. . ....+..++++++++.+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~ 298 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 298 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eccccccccccceeEcCCCcEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence 1 122 224565 566444 46668999999996553 2222210 0 112345688899999888865
Q ss_pred c----------CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEEec
Q 007757 492 L----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 492 ~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~t~~~~~~l~~ 559 (590)
. .+.|.++|+.+.+.+..+.. ...+..++|++|++ +|++.. .++.|.++|..+++.+.++..
T Consensus 299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEEC------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 3 25799999998876654432 23455799999997 666654 589999999999999999975
Q ss_pred CCCCEEEEEEcC
Q 007757 560 HEGVCIGCEWHP 571 (590)
Q Consensus 560 h~~~V~~v~~sp 571 (590)
-.. ...+.+++
T Consensus 373 ~~~-p~~l~~s~ 383 (386)
T 3sjl_D 373 LGH-GPQVITTA 383 (386)
T ss_dssp CCS-SCCEEEEC
T ss_pred CCC-CceeEECC
Confidence 433 34566665
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=8.5e-12 Score=124.18 Aligned_cols=212 Identities=10% Similarity=0.021 Sum_probs=164.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEccCCC--CceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccC-C
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-G 430 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~-~ 430 (590)
.+++|++++.++.|.+||.++|+.+..+..+. ....+.+.+++ ++++ +.++.|+.||. +++.+..+..+. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG---~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG---EILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS---CEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC---CEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 46789999999999999999999999998764 45667777654 5666 45788999999 899999998653 5
Q ss_pred ceeEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEeecC-----CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCc
Q 007757 431 AVNTITFVDSNRRFVTSSD-DKSLRVWEFGIPVVIKYISEP-----HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 504 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~-Dg~I~iwdl~~~~~~~~~~~~-----~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~ 504 (590)
.+.++.+.++|+++++.+. ++.|..+|. .++.+..+... +......+++.++|+++++...++.|.+||.. +
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 7889999999999999887 777887875 55555555321 11235567889999999999999999999987 5
Q ss_pred eeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC------CCEEEEEEcCCCCCEEE
Q 007757 505 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE------GVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 505 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~------~~V~~v~~sp~~~~~l~ 578 (590)
..+...... .....+.+.++|++++++..+++|..+|..+|+.+.++..+. ..+.++...+ ++.+++
T Consensus 156 ~~~w~~~~~------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 156 QLLNSVKLS------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp CEEEEEECS------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEE
T ss_pred CEEEEEECC------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEE
Confidence 555433321 223347788999999999989999999999999999997542 2377888888 666777
Q ss_pred EE
Q 007757 579 TC 580 (590)
Q Consensus 579 s~ 580 (590)
+.
T Consensus 229 ~~ 230 (276)
T 3no2_A 229 CN 230 (276)
T ss_dssp EE
T ss_pred Ee
Confidence 66
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=4.2e-13 Score=151.42 Aligned_cols=243 Identities=13% Similarity=0.042 Sum_probs=156.1
Q ss_pred CCCCCeeEEEEcCCCCCEEE-----EEeCCCcEEEEEccCCCeeEEEeccCCCce--eEEEEecCCCEEEEEeCCCe---
Q 007757 297 GHTKGVSAIRFFPKYGHLIL-----SAGMDTKVKIWDVVNSGKCMRTYMGHSKAV--RDISFCNDGTKFLTASYDKN--- 366 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~-----sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V--~~l~fspdg~~l~s~s~Dg~--- 366 (590)
+|...+.+++|+|+ |++|+ +|+.+..|++||+ .+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl-~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDV-DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEET-TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEEC-CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence 57778999999999 78777 3344568999999 5555431 1122223 68999999999999998776
Q ss_pred ----------EEEEECCCCcE--EEEccC-C--CCceEEEEecCCCCCcEEEEEEcCC----cEEEEECCCCceEEEEcc
Q 007757 367 ----------IKYWDTETGQV--IRTFST-G--KIPYVVKLNPDDDKQNILLAGMSDK----KIVQWDMNTKEITQEYDQ 427 (590)
Q Consensus 367 ----------I~vWd~~t~~~--~~~~~~-~--~~~~~~~~~~~~~~~~~lvsg~~dg----~I~vwDl~t~~~~~~~~~ 427 (590)
|++|++.++.. ...+.. . .......+++++ ..|+.++.++ .|++|+..+++.. .+..
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~ 269 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG---KYLFVYILRGWSENDVYWKRPGEKDFR-LLVK 269 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS---CCEEEEEEETTTEEEEEEECTTCSSCE-EEEE
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC---CEEEEEEeCCCCceEEEEEcCCCCceE-Eeec
Confidence 99999998862 222322 1 233455566654 3344444444 7888877666543 3444
Q ss_pred cCCceeEEEEeCCCCEEEEEe---CCCcEEEEECCCCcE--EEEeecCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 428 HLGAVNTITFVDSNRRFVTSS---DDKSLRVWEFGIPVV--IKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s---~Dg~I~iwdl~~~~~--~~~~~~~~-~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
+...+....+ +++.+++++. .++.|.+||+.++.. ...+...+ ...+..++++ ++.++++...|+..+||.+
T Consensus 270 ~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 5556666666 4565444443 257899999976642 22333223 4567888888 6778888888998888765
Q ss_pred c-CceeecccccccCcccccceEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCeE
Q 007757 502 R-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD----GEGKCWFWDWKSCKV 553 (590)
Q Consensus 502 ~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs----~dg~I~iwd~~t~~~ 553 (590)
. .+..... +..+ ..+.+..++++|++..|+... ..+.|++||+.+++.
T Consensus 348 ~~~g~~~~~---l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 348 TLKGKPVRT---VQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTCCEEEE---CCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eCCCCeeEE---ecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4 2222211 1111 124455678899998776332 357899999988764
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.49 E-value=6.3e-12 Score=126.39 Aligned_cols=242 Identities=12% Similarity=0.122 Sum_probs=162.1
Q ss_pred ccCCCceeEEEEecCCCEEEE-------EeCCCeEEEEECCCCcEEEEcc-----CCCCceEEEEecCCCCCcEEEEEEc
Q 007757 340 MGHSKAVRDISFCNDGTKFLT-------ASYDKNIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMS 407 (590)
Q Consensus 340 ~~h~~~V~~l~fspdg~~l~s-------~s~Dg~I~vWd~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lvsg~~ 407 (590)
...-....+++|+++|.++++ +..++.|.+||..+++...... ....+..+.+.++ .+. +++++.
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~--~g~-l~v~~~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD--ANQ-LFVADM 90 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS--SSE-EEEEET
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC--CCc-EEEEEC
Confidence 334456789999999988877 5778999999998887654322 1133445555443 124 444444
Q ss_pred CCcEEEEECCCCceEEE-Ecc----cCCceeEEEEeCCCCEEEEEeCC---------------CcEEEEECCCCcEEEEe
Q 007757 408 DKKIVQWDMNTKEITQE-YDQ----HLGAVNTITFVDSNRRFVTSSDD---------------KSLRVWEFGIPVVIKYI 467 (590)
Q Consensus 408 dg~I~vwDl~t~~~~~~-~~~----h~~~V~~i~~~p~~~~l~s~s~D---------------g~I~iwdl~~~~~~~~~ 467 (590)
.+.|.+||.. ++.... ... ....+.++++.++++.+++...+ +.|..|+.. .......
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 5589999998 765433 211 12358899999999888877655 567777765 4333222
Q ss_pred ecCCCCcccEEEEc----CCCCEEEEE-EcCCeEEEEEcc-Cceee--cccccccCcccccceEEEEEcCCCCEEEEEeC
Q 007757 468 SEPHMHSMPSISLH----PNTNWLAAQ-SLDNQILIYSTR-ERFQL--NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 468 ~~~~~~~i~~i~~s----p~g~~l~s~-s~dg~I~iwd~~-~~~~~--~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
. .......++++ |+++.|+++ ..++.|.+|++. .+... .....+.++. ......++++++|+++++...
T Consensus 169 ~--~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 T--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH-EGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp E--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS-SCEEEEEEEBTTCCEEEEEET
T ss_pred c--CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC-CCCCCceEECCCCCEEEEEcC
Confidence 1 22345788999 999766555 457899999976 22211 1111222210 034567999999998888888
Q ss_pred CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCC-EEEEEeCCCcEEEeC
Q 007757 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCGWDGLIKYWD 590 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~s~g~DG~I~iWD 590 (590)
++.|.+||..+++.+..+..+...+.+++|+| ++. ++++...++.|..||
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEe
Confidence 89999999988888777877777899999998 555 555666667887764
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=9.8e-11 Score=116.35 Aligned_cols=236 Identities=11% Similarity=-0.015 Sum_probs=163.8
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEcc--CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC
Q 007757 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t 418 (590)
.+...+.++++.++|+++++...++.|.+||.. +....... ....+..+.+.++ +.++++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD---GEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC---CCEEEeCCCCCeEEEECCC-
Confidence 455679999999999977776668999999998 65443221 2233445555543 3566666668899999986
Q ss_pred CceEEEEc--ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007757 419 KEITQEYD--QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496 (590)
Q Consensus 419 ~~~~~~~~--~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I 496 (590)
++. ..+. .....+.++++.++++.+++...++.|.+||. .+.............+..+++++++.++++...++.|
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 433 2232 24567899999999988888877889999998 4444333222244568899999999887777677899
Q ss_pred EEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-EecCCCCEEEEEEcCCCCC
Q 007757 497 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQS 575 (590)
Q Consensus 497 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~ 575 (590)
..|+. ++.... . ..... ...+..++++++|+++++...++.|.+||. +++.... +..+...+.++++.+ ++.
T Consensus 165 ~~~~~-~g~~~~-~-~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~ 237 (299)
T 2z2n_A 165 GRITE-SGDITE-F-KIPTP--ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GID 237 (299)
T ss_dssp EEECT-TCCEEE-E-ECSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTC
T ss_pred EEEcC-CCcEEE-e-eCCCC--CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCC
Confidence 99998 433221 1 11111 234667999999998777777889999998 6664432 223456789999999 566
Q ss_pred EEEEEeCCCcEEEeC
Q 007757 576 KVATCGWDGLIKYWD 590 (590)
Q Consensus 576 ~l~s~g~DG~I~iWD 590 (590)
++++...++.|.+||
T Consensus 238 l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 238 LWFTEWGANKIGRLT 252 (299)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEeccCCceEEEEC
Confidence 666665678888775
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1.6e-10 Score=115.86 Aligned_cols=234 Identities=12% Similarity=0.080 Sum_probs=154.9
Q ss_pred cCCCceeEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC
Q 007757 341 GHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 419 (590)
Q Consensus 341 ~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~ 419 (590)
.+..-.-+..|+++ +.++++...++.|..||..++.. ..+.....+..+.+.+++ . ++++. ++.|.+||..++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG---~-l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSG---G-YVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTS---S-EEEEE-TTEEEEEETTTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCC---C-EEEEE-CCeEEEEECCCC
Confidence 34445668899995 45566666789999999998765 344455566667776644 3 44444 678999999988
Q ss_pred ceEEEEcc----cCCceeEEEEeCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCE
Q 007757 420 EITQEYDQ----HLGAVNTITFVDSNRRFVTSSDD---------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 486 (590)
Q Consensus 420 ~~~~~~~~----h~~~V~~i~~~p~~~~l~s~s~D---------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 486 (590)
+....... ....++.+++.|+|+++++.... ....||.+........+. ........++|+|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EEESBEEEEEECTTSCE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-eccccccceEEcCCCCE
Confidence 65443322 12357889999999977765322 233455544322222222 12334578999999987
Q ss_pred EEEE-EcCCeEEEEEcc--Cceeec--ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC
Q 007757 487 LAAQ-SLDNQILIYSTR--ERFQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 561 (590)
Q Consensus 487 l~s~-s~dg~I~iwd~~--~~~~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~ 561 (590)
|+++ +.++.|.+|++. ++.... .+..+.. ..+....++++++|++.++....+.|..||..+++.+..+..+.
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~--~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK--EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG--GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCC--CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 7555 457889999973 332111 1111111 12456679999999988888888899999999999999999887
Q ss_pred CCEEEEEEc-CCCCCEEEEEeCC
Q 007757 562 GVCIGCEWH-PLEQSKVATCGWD 583 (590)
Q Consensus 562 ~~V~~v~~s-p~~~~~l~s~g~D 583 (590)
..+++++|. |+...+++|...+
T Consensus 241 ~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 241 DKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp SBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCceEEEEeCCCCCEEEEEcCCc
Confidence 789999998 7444455555543
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=1.3e-11 Score=140.19 Aligned_cols=238 Identities=11% Similarity=0.049 Sum_probs=152.1
Q ss_pred CCCceeEEEEecCCCEEEEEeCC-----CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC-------
Q 007757 342 HSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK------- 409 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg------- 409 (590)
|...+..++|||||++|+.++.+ ..|++||+.+++.+...........+.|+++ . .|+.+..++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQAF 236 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-S---EEEEEECCCC------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-C---EEEEEEecCccccccc
Confidence 33478899999999999887654 4699999999987654211111134556664 2 344444443
Q ss_pred -------cEEEEECCCCce--EEEEc--ccCCceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCC--cEEEEeecCC
Q 007757 410 -------KIVQWDMNTKEI--TQEYD--QHLGAVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIP--VVIKYISEPH 471 (590)
Q Consensus 410 -------~I~vwDl~t~~~--~~~~~--~h~~~V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~--~~~~~~~~~~ 471 (590)
.|++|++.++.. ...+. .+...+..+.|+|+|++|+..+.++ .|++||+..+ .....+.. +
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~ 315 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-D 315 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-S
T ss_pred ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-C
Confidence 399999987752 23333 2334588999999999988877544 8999999776 31334433 3
Q ss_pred CCcccEEEEcCCCCEEEEEEcC----CeEEEEEccCce-eecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007757 472 MHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~l~s~s~d----g~I~iwd~~~~~-~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
...+... ++|+++.|+..+.+ +.|.+|++.+.. ... ..+..+ ...+..++++ ++.++++...++..+||
T Consensus 316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~l~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD--TVVPES--KDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEE--EEECCC--SSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccE--EEecCC--CCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 3333443 35889988888764 459999987642 111 112222 2235567777 66678888888887776
Q ss_pred eCC-CCeEEEEEecC-CCCEEEEEEcCCCCCEEEEEeC---CCcEEEeC
Q 007757 547 DWK-SCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 590 (590)
Q Consensus 547 d~~-t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~---DG~I~iWD 590 (590)
.+. ++.....+..+ .+.+..+.++|++..++++.+. .++|.+||
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 554 46666666653 5678899999955545544443 46787775
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.43 E-value=1.1e-10 Score=122.90 Aligned_cols=240 Identities=11% Similarity=0.124 Sum_probs=161.3
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC--eEEEEECCCCcE
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK--NIKYWDTETGQV 377 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg--~I~vWd~~t~~~ 377 (590)
.....|+|+++ ++++++...++.|++||. ..+........ ..... ++|+++++.|+++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~-~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISV-DDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEET-TTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEEC-CCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 35789999998 788888888899999998 45555444433 33344 99999999999998866 899999877665
Q ss_pred EEEc----c-CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE----EcccCCce--eEEEEeCC-CCEEE
Q 007757 378 IRTF----S-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE----YDQHLGAV--NTITFVDS-NRRFV 445 (590)
Q Consensus 378 ~~~~----~-~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~----~~~h~~~V--~~i~~~p~-~~~l~ 445 (590)
...+ . ....+..+.+.+.. +. |+++..++.|+.||..++..... ..++...- +.++|+|+ +.+++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~--g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETE--EW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTS--SE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCC--Ce-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 4443 2 33445566776632 23 44477788999999987764332 22222222 39999995 66666
Q ss_pred EEeCCCcEEEEECCCCcEEEEeecCC--------------CCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeeccc
Q 007757 446 TSSDDKSLRVWEFGIPVVIKYISEPH--------------MHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 446 s~s~Dg~I~iwdl~~~~~~~~~~~~~--------------~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~ 510 (590)
+....+.|+.|+.... +..+.... ......++++++|.++++-+ .++.|+.|++.++......
T Consensus 284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 6677889999997654 22221111 23467899999999777777 7899999996655422111
Q ss_pred cc--ccCc-------ccccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 511 KR--FAGH-------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 511 ~~--~~~~-------~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
.. ..+. ..-.....++++++|.++++-..+++|+.+++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 10 0000 00134667999999888888888888887764
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=4.2e-11 Score=125.78 Aligned_cols=255 Identities=11% Similarity=0.072 Sum_probs=180.5
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEEccCCCeeEEEeccC-------CCceeEEE
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDIS 350 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~ 350 (590)
..+++.++..-..+ .+.++|+ +++|+++. .++.|.++|. .+.+.+..+.-. ......+.
T Consensus 108 t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~-~t~~vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDP-VTFLPIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred CCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEEC-CCCcEEEEEECCCccccccCCCcceEE
Confidence 34566666644455 8999999 66666554 4678999999 577777766421 23456899
Q ss_pred EecCCCEEEEEeC--CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE---
Q 007757 351 FCNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--- 425 (590)
Q Consensus 351 fspdg~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~--- 425 (590)
|+|||++|+++.. ++.|.+.|+.+++.+..+..+.. ....+.+. ..+++.+.||.+.+.++.+++.....
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~--~~~v~~~~dG~~~~V~~~~~~v~~~~~~~ 258 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASP--TVFYMNCRDGSLARVDFADGETKVTNTEV 258 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET--TEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCC--cEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence 9999999999875 57899999999999998876543 33444332 56778888999999999766655332
Q ss_pred -cccCCc-eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE--EeecC---------CCCcccEEEEcCCCCEEEEEEc
Q 007757 426 -DQHLGA-VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK--YISEP---------HMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 426 -~~h~~~-V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~--~~~~~---------~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
.....+ ...+.+.+++..++..+..+.|.+.|+....... .+... .......++++|+++.+++...
T Consensus 259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 111112 1235678888888888888999999986543221 11100 0112234789999887777643
Q ss_pred ----------CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEE
Q 007757 493 ----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 493 ----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs-~dg~I~iwd~~t~~~~~~l 557 (590)
.+.|.++|+.+...+..+.. ......+.|+|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~kvv~~I~v------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETGERINKIEL------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCCEEEEEECCCCeEEEEEEC------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 35799999998776654432 22355799999999 888887 5899999999999999987
No 207
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.42 E-value=1.6e-11 Score=126.17 Aligned_cols=270 Identities=11% Similarity=0.097 Sum_probs=177.4
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCCEEEEEe--CCCcEEEEEccCCCeeEEEe-------ccCCCceeEEEEecCCCEEEE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG--MDTKVKIWDVVNSGKCMRTY-------MGHSKAVRDISFCNDGTKFLT 360 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs--~Dg~I~iWd~~~~~~~~~~~-------~~h~~~V~~l~fspdg~~l~s 360 (590)
+.++.+. ..+..|+++|+ |+++++.. .++.++||.+. .++. ..+ .+|...+.+|+|+++++++++
T Consensus 10 ~~v~~~~---~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~ 83 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWML 83 (343)
T ss_dssp EEEEEES---SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred EEEEEcC---CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence 3444444 67999999999 88888864 23447778774 4443 322 235568999999999876665
Q ss_pred EeC-----CCeEEEEECCCCcEEEEccCCC-------CceEEEEecCCCCCcEEEEEE---cCCcEEEEECCCCceEEEE
Q 007757 361 ASY-----DKNIKYWDTETGQVIRTFSTGK-------IPYVVKLNPDDDKQNILLAGM---SDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 361 ~s~-----Dg~I~vWd~~t~~~~~~~~~~~-------~~~~~~~~~~~~~~~~lvsg~---~dg~I~vwDl~t~~~~~~~ 425 (590)
-.. ++.|.+||+.+++.+..+.... ....+.+.+.. +.++++.. .++.|.+||+.+++....+
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~--g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH--NFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT--TEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC--CEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 443 5799999999999877765431 23456666532 35556655 6889999999998877766
Q ss_pred cccCCcee-EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC-eEEEEEccC
Q 007757 426 DQHLGAVN-TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRE 503 (590)
Q Consensus 426 ~~h~~~V~-~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~I~iwd~~~ 503 (590)
..|..... ...+..++..|.+.+.++.+..|. ..+..|+|+|+++.|+++...+ .|..++...
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred cCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence 55432211 134555777777788888876653 1356799999999998887766 555555321
Q ss_pred ce--eecc---cccc--cCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCCCEEEEEEcCCCCC
Q 007757 504 RF--QLNK---KKRF--AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQS 575 (590)
Q Consensus 504 ~~--~~~~---~~~~--~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~ 575 (590)
.. .+.. ...+ .++ .+....++++++|+++++...++.|.+||..+++....... +...+.+|+|.+ ++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~g~--~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~ 303 (343)
T 2qe8_A 227 LSNLQLTDAELGSKIERYSE--KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-DGY 303 (343)
T ss_dssp HTCTTCCHHHHHTTCEEEEE--CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-TSC
T ss_pred hcCCCCChhhhhcceEeccc--CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-CCc
Confidence 00 0000 0000 011 12334589999999999998999999999866765433332 234689999998 566
Q ss_pred EEEEEeCCCc
Q 007757 576 KVATCGWDGL 585 (590)
Q Consensus 576 ~l~s~g~DG~ 585 (590)
++++.+..+.
T Consensus 304 l~v~~~~~~~ 313 (343)
T 2qe8_A 304 LYFDCNQLHH 313 (343)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 7777764443
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=3.5e-11 Score=126.44 Aligned_cols=257 Identities=12% Similarity=0.033 Sum_probs=177.2
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe----------CCCeEEEEECCCCcEEEEccCC-------
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTETGQVIRTFSTG------- 384 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s----------~Dg~I~vWd~~t~~~~~~~~~~------- 384 (590)
+.|.+.|. .+.+.+.++..-..+ .+.++|||++|+++. .++.|.++|+.+++.+..+..+
T Consensus 99 ~~VsVID~-~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDG-STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEEC-CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 68999999 688888888755555 899999999988886 3678999999999999887653
Q ss_pred -CCceEEEEecCCCCCcEEEEEE-c-CCcEEEEECCCCceEEEEcccCCceeEEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 007757 385 -KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGI 460 (590)
Q Consensus 385 -~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~ 460 (590)
..+..+.+++++ .+++++. . ++.|.++|+.+++.+..+.-.. . ....|+ .+.+++.+.||.+.+.++..
T Consensus 176 g~~P~~~~~spDG---k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 176 GTYQWMNALTPDN---KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp SCCGGGSEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred CCCcceEEEcCCC---CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 345667777765 3455554 3 6899999999999988876321 1 233333 35677777888888888855
Q ss_pred CcEEEEe---ecCCCCc-ccEEEEcCCCCEEEEEEcCCeEEEEEccCceee--cccccc------cCcccccceEEEEEc
Q 007757 461 PVVIKYI---SEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQL--NKKKRF------AGHIVAGYACQVNFS 528 (590)
Q Consensus 461 ~~~~~~~---~~~~~~~-i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~------~~~~~~~~v~~v~~s 528 (590)
.+..... ......+ ...+.+.+++..++..+..+.|.+.|+...... ...... .+. .......++++
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~-~p~g~~~va~s 327 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW-RPGGWQQTAYH 327 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE-EECSSSCEEEE
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc-ccCCceeeEEc
Confidence 5443221 1111111 234567889888888888899999998653211 110000 000 01111136899
Q ss_pred CCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEe-CCCcEEEeC
Q 007757 529 PDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 529 pdg~~l~sgs~----------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~iWD 590 (590)
|+++.|++... .+.|.++|..+.+.+.++.... ...++.|+|++..+++++. .++.|.++|
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 99998777642 3579999999999999987543 4789999995442677766 589999987
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=3.1e-10 Score=119.43 Aligned_cols=240 Identities=9% Similarity=0.024 Sum_probs=164.3
Q ss_pred CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC--cEEEEECCCCce
Q 007757 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEI 421 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~vwDl~t~~~ 421 (590)
.....|+|+++++++++...++.|++||..++...........+. +++.+.+ ..|+++..++ .|++|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g---~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK---QRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS---SEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC---CcEEEEecCCCceEEEEEcCCCce
Confidence 457899999999977777778999999999888776665555555 6776654 4667776655 899999877655
Q ss_pred EEEE----cccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCCcc--cEEEEcCC-CCEEEEEE
Q 007757 422 TQEY----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYI---SEPHMHSM--PSISLHPN-TNWLAAQS 491 (590)
Q Consensus 422 ~~~~----~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~---~~~~~~~i--~~i~~sp~-g~~l~s~s 491 (590)
...+ ......+.+++++|++..|+++..++.|+.||.......... ........ ..++|+|+ +.++++..
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 224567889999996556666777889999999876533220 11122222 39999996 55555555
Q ss_pred cCCeEEEEEccCceeeccccc-ccCcc-------cccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecC--
Q 007757 492 LDNQILIYSTRERFQLNKKKR-FAGHI-------VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCH-- 560 (590)
Q Consensus 492 ~dg~I~iwd~~~~~~~~~~~~-~~~~~-------~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h-- 560 (590)
.++.|+.|+.........-.. ..+.. .-.....++++++|+++++-. .++.|+.|++.++.. .++.++
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~ 365 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD 365 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence 678899998765321110000 00000 012366799999999877777 889999999888874 444444
Q ss_pred -------------CCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 561 -------------EGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 561 -------------~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
-....++++++ ++.++++-..++.|+.+
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEE
Confidence 13578999999 47777877778888765
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=2.5e-10 Score=114.57 Aligned_cols=240 Identities=12% Similarity=0.170 Sum_probs=159.9
Q ss_pred cCCCCCeeEEEEcCCCCCEEEE-------EeCCCcEEEEEccCCCeeEEEec----cCCCceeEEEEecC-CCEEEEEeC
Q 007757 296 SGHTKGVSAIRFFPKYGHLILS-------AGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCND-GTKFLTASY 363 (590)
Q Consensus 296 ~gH~~~V~~l~fsp~~g~~L~s-------gs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fspd-g~~l~s~s~ 363 (590)
.+.-....+++|.++ +.++++ +..++.|.+|+. .+++...... ++...+.+++++++ |++++ ++.
T Consensus 14 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDL-KTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADM 90 (314)
T ss_dssp ECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECT-TTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EET
T ss_pred hccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeC-CCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EEC
Confidence 344456789999988 788887 577899999997 3454432221 25567899999999 66444 444
Q ss_pred CCeEEEEECCCCcEEEE-ccCC-----CCceEEEEecCCCCCcEEEEEEcC---------------CcEEEEECCCCceE
Q 007757 364 DKNIKYWDTETGQVIRT-FSTG-----KIPYVVKLNPDDDKQNILLAGMSD---------------KKIVQWDMNTKEIT 422 (590)
Q Consensus 364 Dg~I~vWd~~t~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~lvsg~~d---------------g~I~vwDl~t~~~~ 422 (590)
.+.|.+||.. ++.... .... ..+..+.+.+++ +++++...+ +.|..||.. ++..
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG---NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI 165 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS---CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC---CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE
Confidence 5589999998 776544 3211 224556665543 566665554 578888876 5543
Q ss_pred EEEcccCCceeEEEEe----CCCCEEEEE-eCCCcEEEEECC-CCcE-----EEEeecCCC-CcccEEEEcCCCCEEEEE
Q 007757 423 QEYDQHLGAVNTITFV----DSNRRFVTS-SDDKSLRVWEFG-IPVV-----IKYISEPHM-HSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~----p~~~~l~s~-s~Dg~I~iwdl~-~~~~-----~~~~~~~~~-~~i~~i~~sp~g~~l~s~ 490 (590)
.. ..+......++|+ ++++.|+.+ ..++.|.+|++. .+.. ...+ ..+. ..+..++++++|.++++.
T Consensus 166 ~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 166 QV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEE
T ss_pred Ee-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEE
Confidence 33 2344567889999 998765544 567899999976 3321 1111 1122 457889999999988888
Q ss_pred EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEE-EeCCCcEEEEeCCC
Q 007757 491 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS-GDGEGKCWFWDWKS 550 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~s-gs~dg~I~iwd~~t 550 (590)
..++.|.+|+..++..... +..+ ...+.+++|+|+|+.|++ ...++.|..|++..
T Consensus 244 ~~~~~i~~~d~~~g~~~~~---~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMR---IRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ETTTEEEEECTTCBSCSEE---EECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCEEEEEcCCCCcEeEE---EeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8889999999874433322 2222 245778999999995554 45668899999764
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.36 E-value=8.6e-11 Score=133.44 Aligned_cols=243 Identities=12% Similarity=0.067 Sum_probs=154.9
Q ss_pred CCCCCeeEEEEcCCCCCEEEEEeCC-----CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCe-----
Q 007757 297 GHTKGVSAIRFFPKYGHLILSAGMD-----TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 366 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~sgs~D-----g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~----- 366 (590)
+|...+..++|+|+ |++|+.++.+ ..|++||+ .+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl-~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 160 DGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGV-ADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ---EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEET-TTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEEC-CCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 45557899999999 7877766543 35999999 56665443 112223468999999 99998887654
Q ss_pred ---------EEEEECCCCcE--EEEccCC-C--CceEEEEecCCCCCcEEEEEEcC-----CcEEEEECCCC--ceEEEE
Q 007757 367 ---------IKYWDTETGQV--IRTFSTG-K--IPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTK--EITQEY 425 (590)
Q Consensus 367 ---------I~vWd~~t~~~--~~~~~~~-~--~~~~~~~~~~~~~~~~lvsg~~d-----g~I~vwDl~t~--~~~~~~ 425 (590)
|.+|++.++.. ...+... + ......+++++ ..|+..+.+ ..|++||+.++ +....+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG---RWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS---CEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC---CEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 89999988762 2233222 2 23445555543 345554433 48999999887 414445
Q ss_pred cccCCceeEEEEeCCCCEEEEEeCC----CcEEEEECCCC-cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEE
Q 007757 426 DQHLGAVNTITFVDSNRRFVTSSDD----KSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 426 ~~h~~~V~~i~~~p~~~~l~s~s~D----g~I~iwdl~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd 500 (590)
..+...+.... .+++..|+..+.+ +.|.+||+..+ .....+...+...+..+++. ++.++++...++..+||.
T Consensus 313 ~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 313 IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred cCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 45555555553 4788888887764 45999999875 24444444455556677777 566778888888877775
Q ss_pred cc-CceeecccccccCcccccceEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCe
Q 007757 501 TR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCK 552 (590)
Q Consensus 501 ~~-~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg----s~dg~I~iwd~~t~~ 552 (590)
+. .+..... +..+ ..+.+..++++|+++.|+.. ...+.|++||+.+++
T Consensus 391 ~~~~g~~~~~---l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAGA---VSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEEE---CBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCceee---ccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 54 2222211 2111 13557778999998866532 235789999998876
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=1.7e-09 Score=107.24 Aligned_cols=237 Identities=11% Similarity=-0.029 Sum_probs=162.5
Q ss_pred cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCC--CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC
Q 007757 341 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 418 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t 418 (590)
.....+.+|++.++|+++++...++.|.+||.. ++........ ..+..+.+.++ +.++++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL---GDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC---CCEEEEecCCCeEEEECCC-
Confidence 345678999999999988877778999999988 6554321111 33444444432 3566666667899999988
Q ss_pred CceEEE-EcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEE
Q 007757 419 KEITQE-YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 497 (590)
Q Consensus 419 ~~~~~~-~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~ 497 (590)
++.... +......+.++++.++++.+++...++.|..||.. +.............+.+++++++++++++...++.|.
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 654322 22234678999999999888887778899999987 4443322222445688999999999666666678899
Q ss_pred EEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-EecCCCCEEEEEEcCCCCCE
Q 007757 498 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQSK 576 (590)
Q Consensus 498 iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~~ 576 (590)
.|+.. +.... .. .... ...+..++++++|++.++....+.|.+||. +++.... +..+...+.++++.+ ++.+
T Consensus 171 ~~~~~-g~~~~-~~-~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l 243 (300)
T 2qc5_A 171 RITNT-GKLEE-YP-LPTN--AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEI 243 (300)
T ss_dssp EECTT-CCEEE-EE-CSST--TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCE
T ss_pred EECCC-CcEEE-ee-CCCC--CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCE
Confidence 99883 32221 11 1111 245678999999988777777788999998 5554432 233456789999999 5666
Q ss_pred EEEEeCCCcEEEeC
Q 007757 577 VATCGWDGLIKYWD 590 (590)
Q Consensus 577 l~s~g~DG~I~iWD 590 (590)
+++...++.|.+||
T Consensus 244 ~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 244 WFTEWGANQIGRIT 257 (300)
T ss_dssp EEEETTTTEEEEEC
T ss_pred EEeccCCCeEEEEC
Confidence 66666678888875
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=5.9e-10 Score=112.16 Aligned_cols=239 Identities=10% Similarity=0.137 Sum_probs=153.9
Q ss_pred eEEEeccCCCceeEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEE
Q 007757 335 CMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 335 ~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~v 413 (590)
.+..+...........|+++|+ ++++...++.|..|+. ++...........+..+.+.+++ +++++...++.|.+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG---~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ---RLVHCEHGRRAITR 111 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS---CEEEEETTTTEEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC---CEEEEECCCCEEEE
Confidence 3444555556678899999998 5666777899999998 45433222233444556665533 55555555688999
Q ss_pred EECCCCceEEEEccc----CCceeEEEEeCCCCEEEE----EeC-------------CCcEEEEECCCCcEEEEeecCCC
Q 007757 414 WDMNTKEITQEYDQH----LGAVNTITFVDSNRRFVT----SSD-------------DKSLRVWEFGIPVVIKYISEPHM 472 (590)
Q Consensus 414 wDl~t~~~~~~~~~h----~~~V~~i~~~p~~~~l~s----~s~-------------Dg~I~iwdl~~~~~~~~~~~~~~ 472 (590)
|+.. ++........ ...++.+.+.++|+.+++ |.. .+.|+.||..++...... ..
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~ 187 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL 187 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cC
Confidence 9986 5543322211 235678999999998886 332 245777777555433322 22
Q ss_pred CcccEEEEcCCCCEEEEEEcC------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007757 473 HSMPSISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 546 (590)
Q Consensus 473 ~~i~~i~~sp~g~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iw 546 (590)
.....++|+|+++.|+++... +.|.+|++.... +.....+... ..+....++++++|++.+ ++.+ .|.+|
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~lwv-~~~~-gv~~~ 263 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGWLWS-SSGT-GVCVF 263 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSCEEE-CCSS-EEEEE
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCCEEE-ecCC-cEEEE
Confidence 345789999999988887765 789999986543 2111111110 122334588999999544 4444 49999
Q ss_pred eCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 547 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 547 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
+. .++.+..+..+. .+.+++|.+ ++..|+.++.++..++
T Consensus 264 ~~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 264 DS-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEEE
T ss_pred CC-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEEE
Confidence 97 677888887665 478999997 5666776666766554
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=3.7e-09 Score=107.51 Aligned_cols=226 Identities=11% Similarity=0.006 Sum_probs=148.0
Q ss_pred ceeEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE
Q 007757 345 AVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 423 (590)
Q Consensus 345 ~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~ 423 (590)
-..+..|++++ .++++...++.|.+||..+++.. .+.....+..+.+.+++ .+++ ++. ..|++||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg---~l~v-~~~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS---KQLI-ASD-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT---EEEE-EET-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCC---eEEE-EEC-CCEEEEECCCCcEEE
Confidence 34678899974 45566667899999999887654 33344556666666643 3444 444 459999998887644
Q ss_pred EEcc----cCCceeEEEEeCCCCEEEEEeC------CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-c
Q 007757 424 EYDQ----HLGAVNTITFVDSNRRFVTSSD------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-L 492 (590)
Q Consensus 424 ~~~~----h~~~V~~i~~~p~~~~l~s~s~------Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~ 492 (590)
.... ....++++.++++|+++++... .+.|..++ .+.. ..+.. .......++|+|+++.|+.+. .
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~-~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFA-DISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEE-EESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeC-CCcccCCeEEcCCCCEEEEEECC
Confidence 3321 1235889999999987776542 24555566 3333 22221 223456899999998776654 4
Q ss_pred CCeEEEEEcc--Cc-eeec--ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEE
Q 007757 493 DNQILIYSTR--ER-FQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 567 (590)
Q Consensus 493 dg~I~iwd~~--~~-~~~~--~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v 567 (590)
++.|.+|++. ++ .... .+..+... ......++++++|.+.++...++.|.+||. +++.+..+..+...+.++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~--~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCC--CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 6889999985 43 2111 11111111 234567899999998887777789999998 678888888777789999
Q ss_pred EEc-CCCCCEEEEEeCC
Q 007757 568 EWH-PLEQSKVATCGWD 583 (590)
Q Consensus 568 ~~s-p~~~~~l~s~g~D 583 (590)
+|. ++...++++...+
T Consensus 277 af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 277 AFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEESTTSCEEEEEEBCT
T ss_pred EEecCCCCEEEEEecCC
Confidence 998 7444444555544
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.29 E-value=5.8e-11 Score=123.10 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=129.2
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCC----------eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG----------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~----------~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
.++.|++++. ..+|++|+.++ +++|++..-. ..... ..+.. |+.|+| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 5899999999 88999999875 6669873111 12122 24666 999999 89999998 88999999
Q ss_pred ECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 371 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 371 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
|+.+............. +..+.+... -++++..||.|.+||+.++.... +...|+|++|+|.| ++.|..|
T Consensus 112 dv~sl~~~~~~~~~~~~-v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKP-VFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp ESSSTTCEEEEEECSSC-EEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EchhhhccCccceeecc-eeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 99876544433222222 233344333 28888999999999999887653 45689999999999 7889999
Q ss_pred CcEEEEECCCCcE--EEEeec--------CCCCcccEEEEcCCCCEEEEEE
Q 007757 451 KSLRVWEFGIPVV--IKYISE--------PHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 451 g~I~iwdl~~~~~--~~~~~~--------~~~~~i~~i~~sp~g~~l~s~s 491 (590)
|++++|+...... ...+.. .+...|.+|.|.+++.++++-.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999877664 445521 3568899999999999888754
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=1.8e-10 Score=119.01 Aligned_cols=260 Identities=9% Similarity=-0.019 Sum_probs=173.8
Q ss_pred CcceeEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCcEEEEEccCCCeeEEEeccC-------CCceeEEE
Q 007757 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDIS 350 (590)
Q Consensus 288 p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~ 350 (590)
..+.+.++..-..+ .+.++|+ +++|+++. .++.|.+||+ .+.+.+.++..+ ......++
T Consensus 55 t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~-~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECT-TTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEEC-CCCCEEEEEECCCccccccCCCcceEE
Confidence 34667777655556 7999999 66666664 3789999999 688888887543 13467899
Q ss_pred EecCCCEEEEEeC--CCeEEE--EECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-----Cce
Q 007757 351 FCNDGTKFLTASY--DKNIKY--WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEI 421 (590)
Q Consensus 351 fspdg~~l~s~s~--Dg~I~v--Wd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-----~~~ 421 (590)
|+|||++|+++.. +..|.+ +|+.+ +..+..+.. ..+.+.+ ...+++.+.|+.+.+.|+.+ ++.
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g--~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGA--AATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEE--TTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCC--CeEEEEEcCCCCEEEEECccccccCCeE
Confidence 9999999999875 467888 99987 455543322 1223333 25667777899999999987 433
Q ss_pred EEE----EcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEeecCC---------CCcccEEEEcCCCCE
Q 007757 422 TQE----YDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPH---------MHSMPSISLHPNTNW 486 (590)
Q Consensus 422 ~~~----~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~--~~~~~~~~~---------~~~i~~i~~sp~g~~ 486 (590)
... +.-...+. . .+++..++..+. +.|.+.|+.... .+..+.... ......++++|+++.
T Consensus 203 ~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 203 GAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred EEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 211 11112233 3 666677666666 999999986532 222221110 011233789999998
Q ss_pred EEEEEc-C--------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCE-EEEEe-CCCcEEEEeCCCCeEEE
Q 007757 487 LAAQSL-D--------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF-VMSGD-GEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 487 l~s~s~-d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~-l~sgs-~dg~I~iwd~~t~~~~~ 555 (590)
++++.. . +.+.++|+.+...+..+.. ......++|+|||++ +++.. .++.|.++|+.+++.+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEEC------CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 887643 2 3567999988766544432 123557999999984 55555 58999999999999999
Q ss_pred EEecCCCCEEEEEEcC
Q 007757 556 TLKCHEGVCIGCEWHP 571 (590)
Q Consensus 556 ~l~~h~~~V~~v~~sp 571 (590)
++.....+ ..+++.+
T Consensus 352 ~I~vg~~P-~~i~~~~ 366 (368)
T 1mda_H 352 SVELDKGP-ESLSVQN 366 (368)
T ss_dssp ECCCCSCC-CEEECCC
T ss_pred EEECCCCC-CEEEeec
Confidence 99866553 5666654
No 217
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.28 E-value=2.4e-09 Score=110.89 Aligned_cols=255 Identities=10% Similarity=0.060 Sum_probs=172.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCce---
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--- 388 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~--- 388 (590)
+..|+.++.++.|..+|. .+++.+..+............. +..++.++.++.|..+|..+|+.+..+.......
T Consensus 103 ~~~v~v~~~~g~l~a~d~-~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNT-SDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 467888899999999998 6787777665443322222332 4578888899999999999999988876543321
Q ss_pred ---EEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCc----------e-eEEEEeCCCCEEEEEeCCCcEE
Q 007757 389 ---VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA----------V-NTITFVDSNRRFVTSSDDKSLR 454 (590)
Q Consensus 389 ---~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~----------V-~~i~~~p~~~~l~s~s~Dg~I~ 454 (590)
..... ...++++..++.|..+|..+++.+..+...... + ....+ .+..++.++.++.|.
T Consensus 180 ~~~~~~~~-----~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 180 GESAPTTA-----FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLT 252 (376)
T ss_dssp CCCCCEEE-----TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEE
T ss_pred CCCCcEEE-----CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEE
Confidence 11111 146888888999999999999988776532110 1 11111 245778888899999
Q ss_pred EEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEE
Q 007757 455 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l 534 (590)
.+|..++..+..... .....+.. .+..|++++.++.|..+|..++................ ..+ .+..|
T Consensus 253 ~~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~----~~~--~~~~l 321 (376)
T 3q7m_A 253 ALDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTS----PVL--YNGNL 321 (376)
T ss_dssp EEETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCC----CEE--ETTEE
T ss_pred EEECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccC----CEE--ECCEE
Confidence 999998887765532 22333333 46788888899999999998876654333222211111 112 25688
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEEecCCCCEEE-EEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 535 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 535 ~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++++.+|.|+++|..+++.+..+......+.+ .... +..|+.++.+|.|..||
T Consensus 322 ~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~---~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA---DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE---TTEEEEEBTTSCEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE---CCEEEEEeCCCEEEEEe
Confidence 89999999999999999999888764443322 2222 34788899999999885
No 218
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=4.1e-10 Score=126.23 Aligned_cols=270 Identities=14% Similarity=0.099 Sum_probs=183.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCc-----------eeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA-----------VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-----------V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|++++.++.|..+|. .+++.+..+...... ...+++ .+..|++++.|+.|..+|..+|+.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDT-RTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEET-TTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 457777888899999999 688888887644221 122333 466888899999999999999999998
Q ss_pred ccCC-C-----CceEEEEecCCCCCcEEEEEEc------CCcEEEEECCCCceEEEEcccCCc-----------------
Q 007757 381 FSTG-K-----IPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGA----------------- 431 (590)
Q Consensus 381 ~~~~-~-----~~~~~~~~~~~~~~~~lvsg~~------dg~I~vwDl~t~~~~~~~~~h~~~----------------- 431 (590)
+... . .....-... + ..+++++. ++.|+.||..+|+.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~---~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF---K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE---T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred ecCCcCcCcCcccccCcEEE---C-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 8765 2 111100111 1 34555553 699999999999999887542211
Q ss_pred ---------------eeEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEeecCCC-----
Q 007757 432 ---------------VNTITFVDSNRRFVTSSDDK-------------------SLRVWEFGIPVVIKYISEPHM----- 472 (590)
Q Consensus 432 ---------------V~~i~~~p~~~~l~s~s~Dg-------------------~I~iwdl~~~~~~~~~~~~~~----- 472 (590)
...+++.+++..++.++.++ +|..+|..+++.+-.+...+.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 13578888888888887664 599999999988877654221
Q ss_pred ---CcccEEEEcCCC---CEEEEEEcCCeEEEEEccCceeeccccccc----------Cccc------------------
Q 007757 473 ---HSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFA----------GHIV------------------ 518 (590)
Q Consensus 473 ---~~i~~i~~sp~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~------------------ 518 (590)
.....+....+| ..+++++.+|.|+++|..++..+.....-. +...
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 122223333467 688999999999999998887654332110 0000
Q ss_pred --ccceEEEEEcCCCCEEEEEeC-------------------------------------------CCcEEEEeCCCCeE
Q 007757 519 --AGYACQVNFSPDGRFVMSGDG-------------------------------------------EGKCWFWDWKSCKV 553 (590)
Q Consensus 519 --~~~v~~v~~spdg~~l~sgs~-------------------------------------------dg~I~iwd~~t~~~ 553 (590)
...-..++|+|++.++++... .|.|..||+.+++.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 000014688999888877543 27899999999999
Q ss_pred EEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 554 FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 554 ~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+..+... .++.+..+.. .+.+++.++.||.|++||
T Consensus 470 ~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 470 AWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred EeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEE
Confidence 9988743 3344444555 455888899999999987
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=4.6e-09 Score=105.23 Aligned_cols=230 Identities=9% Similarity=0.063 Sum_probs=149.2
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC
Q 007757 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 374 (590)
Q Consensus 295 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t 374 (590)
+..+..-.-+..|+|+.+.++++...++.|..||. ..+.. ..+ .....+.+++++++|+++++ . ++.|.+||..+
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~-~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDS-FTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEET-TTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEEC-CCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 34455556788999976778888888999999998 34433 333 34577999999999995554 4 57899999998
Q ss_pred CcEEEEccCC-----CCceEEEEecCCCCCcEEEEEEc-----------CCcEEEEECCCCceEEEEcccCCceeEEEEe
Q 007757 375 GQVIRTFSTG-----KIPYVVKLNPDDDKQNILLAGMS-----------DKKIVQWDMNTKEITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 375 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lvsg~~-----------dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~ 438 (590)
++........ ..+..+.+.+++ +++++... .+.|+.++.. ++.. .+..+....+.++|+
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG---~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAG---RYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWS 157 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTS---CEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEEC
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCC---CEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEc
Confidence 8764433221 112344554432 45554432 2345555543 3332 233345567899999
Q ss_pred CCCCEEE-EEeCCCcEEEEECC--CCcEE--EEeec--CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 439 DSNRRFV-TSSDDKSLRVWEFG--IPVVI--KYISE--PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 439 p~~~~l~-s~s~Dg~I~iwdl~--~~~~~--~~~~~--~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
|+++.|+ +.+.++.|.+|++. .+... ..+.. ........++++++|++.++....+.|.+||..++..+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 9998764 55667889999973 33321 11211 123457889999999888887778899999987665443332
Q ss_pred cccCcccccceEEEEEc-CCCCEEEEEeC
Q 007757 512 RFAGHIVAGYACQVNFS-PDGRFVMSGDG 539 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~s-pdg~~l~sgs~ 539 (590)
.+ ...+++++|. |+++.|++++.
T Consensus 238 ---~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 ---LP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ---CS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred ---CC--CCCceEEEEeCCCCCEEEEEcC
Confidence 12 2457789998 88887765553
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.24 E-value=2.7e-09 Score=107.31 Aligned_cols=238 Identities=11% Similarity=0.123 Sum_probs=156.9
Q ss_pred ceeEEecCCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEE
Q 007757 290 RLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 368 (590)
Q Consensus 290 ~~v~~l~gH~~~V~~l~fsp~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~ 368 (590)
..+..+..+........|+|+ ++ +++++..++.|..|+. .+. +..+..+...+..++++++|+++++...++.|.
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~-g~~l~~~d~~~~~i~~~~~--~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEA-QRTLVWSDLVGRRVLGWRE--DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGG-GTEEEEEETTTTEEEEEET--TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CceEEEecCCcCccCCeEeCC-CCEEEEEECCCCEEEEEeC--CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 344555566677889999999 55 7788888899999987 333 445556777899999999999666655568999
Q ss_pred EEECCCCcEEEEccC-----CCCceEEEEecCCCCCcEEEE----EEc-------------CCcEEEEECCCCceEEEEc
Q 007757 369 YWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLA----GMS-------------DKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 369 vWd~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lvs----g~~-------------dg~I~vwDl~t~~~~~~~~ 426 (590)
+|+.. ++....... ...+..+.+.+++ .++++ |.. .+.|+.||..+++.....
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG---~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG---AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTS---CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCC---CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 99986 554322211 1123345565543 45654 332 357888888777655443
Q ss_pred ccCCceeEEEEeCCCCEEEEEeCC------CcEEEEECCCCcE--EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEE
Q 007757 427 QHLGAVNTITFVDSNRRFVTSSDD------KSLRVWEFGIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~l~s~s~D------g~I~iwdl~~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~i 498 (590)
.....+.++|+|+++.|+.+... +.|.+|++..... ...+..........++++++|++.++ +. +.|.+
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~-~gv~~ 262 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SG-TGVCV 262 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CS-SEEEE
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cC-CcEEE
Confidence 44567889999999988777665 6899999865431 11222223345678999999995444 44 45999
Q ss_pred EEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
|+... ..+..+. .. ..+..++|+++++.|+.++.++ |+.++
T Consensus 263 ~~~~g-~~~~~~~---~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 263 FDSDG-QLLGHIP---TP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECTTS-CEEEEEE---CS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ECCCC-CEEEEEE---CC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 99854 3332222 11 1355789999999888887764 44333
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.24 E-value=4.4e-09 Score=108.87 Aligned_cols=257 Identities=9% Similarity=0.046 Sum_probs=169.6
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCC---------CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEcc
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS---------KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~---------~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
+..|++++.++.|..+|. .+++.+..+.... ..+.+. ...++..++.++.++.|..+|..+|+.+..+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNA-DDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEc-cCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 567888888999999998 5777776655421 222222 22245678888899999999999999988776
Q ss_pred CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCce-----eEEEEeCCCCEEEEEeCCCcEEEEE
Q 007757 383 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDSNRRFVTSSDDKSLRVWE 457 (590)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V-----~~i~~~p~~~~l~s~s~Dg~I~iwd 457 (590)
............ ...+++++.++.|+.+|..+++.+..+....... ...... +..+++++.++.|..+|
T Consensus 131 ~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 131 VAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp CSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred CCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 553322111111 1468888899999999999999888775432211 222222 45778888899999999
Q ss_pred CCCCcEEEEeecCCCCc---------c-cEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEE
Q 007757 458 FGIPVVIKYISEPHMHS---------M-PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~---------i-~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
..++..+.......... + ....+ .+..+++++.++.|..+|..++..+..... . ....+..
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~------~~~~~~~ 275 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL-G------SVNDFIV 275 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC-C------CEEEEEE
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC-C------CCCCceE
Confidence 98888776654321100 1 11111 256788888899999999988765533221 1 1122333
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 528 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++..|+.++.+|.|..+|..+++.+...... ...+...... +..|+.++.+|.|.++|
T Consensus 276 --~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 276 --DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp --ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEE
T ss_pred --ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEE
Confidence 4678888889999999999999998877632 2222333332 24688888888888875
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=7.6e-10 Score=124.31 Aligned_cols=273 Identities=14% Similarity=0.095 Sum_probs=180.7
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCc----------e-eEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA----------V-RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~----------V-~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|++++.++.|..+|. .+++.+..+..+... + ..+.+ .+..|++++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDA-RDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEC-CCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 567788888999999999 688888887643321 0 11222 356788899999999999999999988
Q ss_pred ccCC-CCc--eEEEEecCCCCCcEEEEEE------cCCcEEEEECCCCceEEEEcccC----------------------
Q 007757 381 FSTG-KIP--YVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHL---------------------- 429 (590)
Q Consensus 381 ~~~~-~~~--~~~~~~~~~~~~~~lvsg~------~dg~I~vwDl~t~~~~~~~~~h~---------------------- 429 (590)
+... ... ..+...|.-.. ..+++++ .++.|+.||.++|+++..+....
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 7654 111 00000110001 2455554 36899999999999988875210
Q ss_pred ---------CceeEEEEeCCCCEEEEEeCCCc-------------------EEEEECCCCcEEEEeecC-CC-------C
Q 007757 430 ---------GAVNTITFVDSNRRFVTSSDDKS-------------------LRVWEFGIPVVIKYISEP-HM-------H 473 (590)
Q Consensus 430 ---------~~V~~i~~~p~~~~l~s~s~Dg~-------------------I~iwdl~~~~~~~~~~~~-~~-------~ 473 (590)
.....+++.++...++.++.++. |..||..+++.+-.+... +. .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 01135788888889999887763 999999999888766542 21 1
Q ss_pred cccEEEEcCCCC---EEEEEEcCCeEEEEEccCceeeccccccc-------------------------Cc---------
Q 007757 474 SMPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA-------------------------GH--------- 516 (590)
Q Consensus 474 ~i~~i~~sp~g~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-------------------------~~--------- 516 (590)
.+....+..+|+ .++.++.+|.|+++|..++..+....... ..
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 111122223554 78889999999999998887652211000 00
Q ss_pred ccccceEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEeCCCC
Q 007757 517 IVAGYACQVNFSPDGRFVMSGDG---------------------------------------------EGKCWFWDWKSC 551 (590)
Q Consensus 517 ~~~~~v~~v~~spdg~~l~sgs~---------------------------------------------dg~I~iwd~~t~ 551 (590)
.....-..++|+|+..+|++... +|.|..||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 00000112688998888876532 378999999999
Q ss_pred eEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 552 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+.+..+..+.. +....+.. .+.+|+.++.||.|+.||
T Consensus 466 ~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 466 QAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp EEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred CeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEE
Confidence 99999886543 23334444 456899999999999997
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=1.4e-10 Score=120.27 Aligned_cols=174 Identities=10% Similarity=0.058 Sum_probs=129.6
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCCc-----------EEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEE
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~v 413 (590)
.++.+++++...+|++|+.+ .+++|++...+ ......... +..+.| + +.+|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d---~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H---GDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E---TTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C---CCEEEEE-cCCcEEE
Confidence 68999999999999999987 55569865333 112233344 666666 2 2677777 8899999
Q ss_pred EECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007757 414 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 414 wDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d 493 (590)
||+++.........|...+.++.+.+. .+++++.||.|.+||+....... +...|++++|+|+| ++.+..|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcC
Confidence 999987766667777888888887754 38889999999999998776643 33579999999999 7889999
Q ss_pred CeEEEEEccCcee--eccc---cccc---CcccccceEEEEEcCCCCEEEEE
Q 007757 494 NQILIYSTRERFQ--LNKK---KRFA---GHIVAGYACQVNFSPDGRFVMSG 537 (590)
Q Consensus 494 g~I~iwd~~~~~~--~~~~---~~~~---~~~~~~~v~~v~~spdg~~l~sg 537 (590)
|.|++|+...... ...+ ..+. +| ...+.++.|.+++.++++-
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~--~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVE--EYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTT--TSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCC--CeeEEEEEEecCCeEEEEE
Confidence 9999998876542 1111 1111 12 4678899999999998863
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=2.4e-09 Score=120.25 Aligned_cols=259 Identities=13% Similarity=0.154 Sum_probs=169.3
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccC--CCceeEEEEec---CCCEEEEEe------CCCeEEEEECCCCcEEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH--SKAVRDISFCN---DGTKFLTAS------YDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h--~~~V~~l~fsp---dg~~l~s~s------~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|++++.|+.|..+|. .+++.+..+... ......+..+| ++. ++.++ .+|.|..||..+|+.+..
T Consensus 121 ~g~v~v~~~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDA-KTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEccCCEEEEEEC-CCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 467888999999999999 688888776542 11111111122 444 44443 378999999999999988
Q ss_pred ccCC--CCc------------------------------eEEEEecCCCCCcEEEEEEcCCc------------------
Q 007757 381 FSTG--KIP------------------------------YVVKLNPDDDKQNILLAGMSDKK------------------ 410 (590)
Q Consensus 381 ~~~~--~~~------------------------------~~~~~~~~~~~~~~lvsg~~dg~------------------ 410 (590)
+... ... ....+.+. ..+++++..++.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~---~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE---LNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC---CCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 7531 000 12334433 257788877753
Q ss_pred -EEEEECCCCceEEEEcc--cC-------CceeEEEEeCCCC---EEEEEeCCCcEEEEECCCCcEEEEeecCCC-----
Q 007757 411 -IVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHM----- 472 (590)
Q Consensus 411 -I~vwDl~t~~~~~~~~~--h~-------~~V~~i~~~p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~----- 472 (590)
|..||..+|+.+..+.. |. .++.......+++ .++.++.+|.|+++|..+++.+........
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence 99999999999988864 21 1222222233554 788999999999999999887744322110
Q ss_pred ---------------------------------CcccEEEEcCCCCEEEEEEc---------------------------
Q 007757 473 ---------------------------------HSMPSISLHPNTNWLAAQSL--------------------------- 492 (590)
Q Consensus 473 ---------------------------------~~i~~i~~sp~g~~l~s~s~--------------------------- 492 (590)
.....++++|+..+|++...
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 01123788998888887643
Q ss_pred ------------------CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 007757 493 ------------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 493 ------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
+|.|..||+.+++........ .. ...-.++..+.+|++|+.||.|+.||.++|+.+
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~-----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TI-----FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SS-----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CC-----ccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 367899999887765443321 11 111244557889999999999999999999999
Q ss_pred EEEecCCCCE-EEEEEcCCCCCEEEEEe
Q 007757 555 RTLKCHEGVC-IGCEWHPLEQSKVATCG 581 (590)
Q Consensus 555 ~~l~~h~~~V-~~v~~sp~~~~~l~s~g 581 (590)
.+++...+.+ .-+.|..++..++++.+
T Consensus 510 w~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 510 WEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 9998654322 34566664555666544
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.19 E-value=1.2e-09 Score=112.83 Aligned_cols=248 Identities=9% Similarity=-0.098 Sum_probs=165.3
Q ss_pred cEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe----------CCCeEEEEECCCCcEEEEccCC--------
Q 007757 323 KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTETGQVIRTFSTG-------- 384 (590)
Q Consensus 323 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s----------~Dg~I~vWd~~t~~~~~~~~~~-------- 384 (590)
+|.+.|. .+.+.+.++.....+ .+.|+||+++++++. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~-~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEET-TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEEC-CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 7889999 688888888755555 799999999999886 3689999999999999998654
Q ss_pred CCceEEEEecCCCCCcEEEEEE-c-CCcEEE--EECCCCceEEEEcccCCceeEEEEeCCC-CEEEEEeCCCcEEEEECC
Q 007757 385 KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQ--WDMNTKEITQEYDQHLGAVNTITFVDSN-RRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 385 ~~~~~~~~~~~~~~~~~lvsg~-~-dg~I~v--wDl~t~~~~~~~~~h~~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~ 459 (590)
..+..+.+++++. +++++. . ...|.+ +|+.+ +..+... +. +.+.|++ ..+++.+.|+.+.+.|+.
T Consensus 124 ~~P~~ia~SpDGk---~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 124 PRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCcceEEEcCCCC---EEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 4567888888763 355544 3 467888 99877 4444321 11 1223333 456667788888888887
Q ss_pred C-----CcEEEE---eecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce--eecccccc------cCcccccceE
Q 007757 460 I-----PVVIKY---ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--QLNKKKRF------AGHIVAGYAC 523 (590)
Q Consensus 460 ~-----~~~~~~---~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~------~~~~~~~~v~ 523 (590)
. ++.... .......+. . .+++..++..+. +.|.+.|+.... ........ .+.. .....
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~-p~g~~ 267 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR-SAGFQ 267 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE-ECSSS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc-cCcce
Confidence 6 221110 000111222 3 666666666666 999999986432 11111110 0100 11111
Q ss_pred EEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEe-CCCcEEEeC
Q 007757 524 QVNFSPDGRFVMSGDG---------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 590 (590)
Q Consensus 524 ~v~~spdg~~l~sgs~---------dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~iWD 590 (590)
.++|+|+++.++.+.. .+.+.++|+.+.+.+.++.... ...+++|+|++..+++++. .++.|.++|
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 2689999998887543 2356799999999998887554 5789999996666788888 599999987
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=1.9e-09 Score=121.43 Aligned_cols=241 Identities=15% Similarity=0.187 Sum_probs=152.6
Q ss_pred CCCCCeeEEEEcCCCCCEEEE-Ee----CCCcEEEEEccCCCeeEEE-eccCCCceeEEEEecCCCEEEEEeCCC-----
Q 007757 297 GHTKGVSAIRFFPKYGHLILS-AG----MDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDK----- 365 (590)
Q Consensus 297 gH~~~V~~l~fsp~~g~~L~s-gs----~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fspdg~~l~s~s~Dg----- 365 (590)
+|...|..++|+|+ |++|+- .+ ....|++||+ .+++.+.. +.+ .....++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl-~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDV-ESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEET-TTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEEC-CCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccc
Confidence 46667899999999 777663 32 2357999999 56665433 221 113578999 999999998874
Q ss_pred --------eEEEEECCCCcE--EEEccCCC--C--ceEEEEecCCCCCcEEEEEEc---CCcEEEEECCCCc-eEEEEcc
Q 007757 366 --------NIKYWDTETGQV--IRTFSTGK--I--PYVVKLNPDDDKQNILLAGMS---DKKIVQWDMNTKE-ITQEYDQ 427 (590)
Q Consensus 366 --------~I~vWd~~t~~~--~~~~~~~~--~--~~~~~~~~~~~~~~~lvsg~~---dg~I~vwDl~t~~-~~~~~~~ 427 (590)
.|++|++.++.. ...+.... . ...+.++++ ...++++... ...|+++|+.++. ....+..
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~ 278 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED--DRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG 278 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT--SCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC--CCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence 399999987753 23333222 2 234455554 3345555443 2589999998763 3445555
Q ss_pred cCCceeEEEEeCCCCEEEEEe-CC---CcEEEEECCCCcE--EEEeecCCCCcccEEEEcCCCCEEEEEEcCC---eEEE
Q 007757 428 HLGAVNTITFVDSNRRFVTSS-DD---KSLRVWEFGIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILI 498 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s-~D---g~I~iwdl~~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg---~I~i 498 (590)
+....... |++++..|+..+ .+ +.|.++++..+.. ...+. ++...+. .|++++++|+....++ .|++
T Consensus 279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 66665555 556666655444 33 5799999987643 23333 2333443 8889999888776654 6888
Q ss_pred EEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeE
Q 007757 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE----GKCWFWDWKSCKV 553 (590)
Q Consensus 499 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d----g~I~iwd~~t~~~ 553 (590)
|++...... .+ .+.+ .+.+..+.+++++..|+....+ +.|+.||+.+++.
T Consensus 355 ~d~~g~~~~-~l-~~p~---~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 355 FDYEGKRVR-EV-ALPG---LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ECTTSCEEE-EE-CCSS---SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EECCCCeeE-Ee-ecCC---CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 988754321 11 1211 2456667788888877655444 8899999987754
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=8.8e-09 Score=115.43 Aligned_cols=257 Identities=12% Similarity=0.105 Sum_probs=171.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccC-C----CceeEEEEecCCCEEEEEeC------CCeEEEEECCCCcEEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-S----KAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~----~~V~~l~fspdg~~l~s~s~------Dg~I~vWd~~t~~~~~~ 380 (590)
+..|+.++.|+.|..+|. .+++.+..+..+ . ..+.+--...+ ..++.++. ++.|+.||..+|+.+..
T Consensus 128 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDA-ATGKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEeeecCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 568888899999999999 688888877654 2 12222111113 45555543 79999999999999988
Q ss_pred ccCCCCc---------------------------------eEEEEecCCCCCcEEEEEEcCC------------------
Q 007757 381 FSTGKIP---------------------------------YVVKLNPDDDKQNILLAGMSDK------------------ 409 (590)
Q Consensus 381 ~~~~~~~---------------------------------~~~~~~~~~~~~~~lvsg~~dg------------------ 409 (590)
+...... ..+.+.+. ..+++++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~---~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE---LNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC---CCEEEEECCCCccccCCCCCccCCCCeee
Confidence 7653211 12334443 25677776553
Q ss_pred -cEEEEECCCCceEEEEcc--cC-------CceeEEEEeCCC---CEEEEEeCCCcEEEEECCCCcEEEEeecCCCC---
Q 007757 410 -KIVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDSN---RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--- 473 (590)
Q Consensus 410 -~I~vwDl~t~~~~~~~~~--h~-------~~V~~i~~~p~~---~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~--- 473 (590)
.|..+|..+++.+..+.. |. .....+....+| ..++.++.+|.|+++|..+++.+..+......
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 599999999999988764 21 122223333466 67899999999999999999887665422100
Q ss_pred -------c------------------------ccEEEEcCCCCEEEEEEcC-----------------------------
Q 007757 474 -------S------------------------MPSISLHPNTNWLAAQSLD----------------------------- 493 (590)
Q Consensus 474 -------~------------------------i~~i~~sp~g~~l~s~s~d----------------------------- 493 (590)
+ -..++++|++.++++...+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 0 1257889998888876542
Q ss_pred --------------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 007757 494 --------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 494 --------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 559 (590)
|.|..||+.+++.+..... .. .+....++.++.++++++.+|.|++||..+++.+..+..
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~-----~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VS-----PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCC-CC-----CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 6799999988776544332 11 112234556788999999999999999999999999985
Q ss_pred CCC-CEEEEEEcCCCCCEEEE
Q 007757 560 HEG-VCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 560 h~~-~V~~v~~sp~~~~~l~s 579 (590)
..+ ...-+.|..++..++++
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEE
T ss_pred CCCcccCCEEEEeCCEEEEEE
Confidence 543 22334555534445444
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=5.5e-08 Score=98.77 Aligned_cols=222 Identities=12% Similarity=0.062 Sum_probs=143.9
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
.-..+++|+|+++.++++...++.|.+|+. ..++. ..+. ....+.+++|+++|++++++ . ..|.+||..+++...
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~-~~~~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHL-ASGRK-TVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEET-TTTEE-EEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEEC-CCCcE-EEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 345678999986677788878899999998 34443 3332 34679999999999877754 3 459999998887654
Q ss_pred EccCC--C---CceEEEEecCCCCCcEEEEEEc------CCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE-
Q 007757 380 TFSTG--K---IPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS- 447 (590)
Q Consensus 380 ~~~~~--~---~~~~~~~~~~~~~~~~lvsg~~------dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~- 447 (590)
..... . .+..+.+.+++ .++++... .+.|+.++ +++... +..+....+.++|+|+++.|+.+
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G---~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSG---ALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTS---CEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEE
T ss_pred EeeCCCCCCCCCCCCEEECCCC---CEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEE
Confidence 33221 1 22344454433 45554432 35677777 454433 32344567899999999876554
Q ss_pred eCCCcEEEEECC--CC-c-----EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccc
Q 007757 448 SDDKSLRVWEFG--IP-V-----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 448 s~Dg~I~iwdl~--~~-~-----~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
+.++.|.+|++. ++ . ....+ .........++++++|.+.++...++.|.+|+.. +..+.. +..+ .
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~---i~~~--~ 270 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIAR---YEVP--G 270 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEE---EECS--C
T ss_pred CCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEE---EECC--C
Confidence 557899999985 43 2 11121 1223456789999999887777677899999984 333322 2222 2
Q ss_pred cceEEEEEc-CCCCEEEEEeC
Q 007757 520 GYACQVNFS-PDGRFVMSGDG 539 (590)
Q Consensus 520 ~~v~~v~~s-pdg~~l~sgs~ 539 (590)
..+.+++|+ ++++.|++++.
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEB
T ss_pred CCcEEEEEecCCCCEEEEEec
Confidence 357789998 88887765543
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.14 E-value=1.9e-09 Score=121.33 Aligned_cols=238 Identities=11% Similarity=0.059 Sum_probs=147.5
Q ss_pred cCCCceeEEEEecCCCEEEEEe-----CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC------
Q 007757 341 GHSKAVRDISFCNDGTKFLTAS-----YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK------ 409 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s-----~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg------ 409 (590)
+|...+..++|||||++|+.+. ....|++||+.+++.+...........+.|+ ++ ..|+.+..+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg---~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GN---EGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TT---TEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CC---CEEEEEEecCcccccc
Confidence 3556788999999999888433 2357999999999876542111112344566 54 3455555553
Q ss_pred -------cEEEEECCCCce--EEEE--cc-cCCceeEEEEeCCCCEEEEEeC----CCcEEEEECCCCc-EEEEeecCCC
Q 007757 410 -------KIVQWDMNTKEI--TQEY--DQ-HLGAVNTITFVDSNRRFVTSSD----DKSLRVWEFGIPV-VIKYISEPHM 472 (590)
Q Consensus 410 -------~I~vwDl~t~~~--~~~~--~~-h~~~V~~i~~~p~~~~l~s~s~----Dg~I~iwdl~~~~-~~~~~~~~~~ 472 (590)
.|++|++.++.. ...+ .. |...+.++.|+|++++|+.... .+.|+++|+..+. ....+.. +.
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~ 280 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DL 280 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CC
Confidence 499999987642 3333 33 4456788999999998865442 3589999997763 2333432 33
Q ss_pred CcccEEEEcCCCCEEEEEEcC----CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC-CC--cEEE
Q 007757 473 HSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EG--KCWF 545 (590)
Q Consensus 473 ~~i~~i~~sp~g~~l~s~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-dg--~I~i 545 (590)
...... +++++..|+..+.. +.|..+++.+.... ....+..+. ..+. .|++++++|+.... +| .|++
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCC--SSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCC--CCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 334443 66677666655532 57999998765321 112233332 2232 88999998876654 43 6899
Q ss_pred EeCCCCeEEEEEec-CCCCEEEEEEcCCCCCEEEEEeCC---CcEEEeC
Q 007757 546 WDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWD---GLIKYWD 590 (590)
Q Consensus 546 wd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~D---G~I~iWD 590 (590)
|++..+. ...+.. +.+.+..+.+++++..++++.+.. +.|..||
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 9987554 444442 445677788888555555554432 6677765
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=7.9e-11 Score=122.27 Aligned_cols=200 Identities=15% Similarity=0.100 Sum_probs=115.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCc-e
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-V 432 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~-V 432 (590)
++..+++++.||.|..||..+|+.+..+.. .......+.. .+.++++++.|+.|+.||..+++.+..+..+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~---~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV---EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC--------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc---CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999999988876 3332222222 2346777789999999999999887776543211 1
Q ss_pred e-EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 433 N-TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 433 ~-~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
. +..+. .+..+++++.++.|+.||..+++.+..+.... ...++|++..+++++.++.|+.||..++..+....
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 1 11111 34577888889999999999888776654321 23456688899999999999999998876543322
Q ss_pred cccCcccccceEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEE-EEEcC
Q 007757 512 RFAGHIVAGYACQVNFSPDG---RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG-CEWHP 571 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg---~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~-v~~sp 571 (590)
. .. .....++.+. ..+++++.+|.|+.||..+++.+..+... .++.. ..+++
T Consensus 158 ~-~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~ 213 (369)
T 2hz6_A 158 Y-FD------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQR 213 (369)
T ss_dssp E-EE------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTT
T ss_pred c-cc------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecC
Confidence 1 10 1112333332 46777889999999999999999888743 44443 34444
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.04 E-value=8.1e-08 Score=100.02 Aligned_cols=226 Identities=14% Similarity=0.151 Sum_probs=147.9
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCC---CeeEEEec------cC-CCceeEEEEecCCCEEEEEeCC------CeEEEEEC
Q 007757 309 PKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYM------GH-SKAVRDISFCNDGTKFLTASYD------KNIKYWDT 372 (590)
Q Consensus 309 p~~g~~L~sgs~Dg~I~iWd~~~~---~~~~~~~~------~h-~~~V~~l~fspdg~~l~s~s~D------g~I~vWd~ 372 (590)
++...++++|..+++|.|+|+... -+.++++. .. ...-..+..+|+| +++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 663455566778899999998322 15555552 11 1234567888999 77776665 78999999
Q ss_pred CCCcEEEEccCCCC----ceEEEEecCCCCCcEEEEEE-------------------cCCcEEEEECCCCceEEEEccc-
Q 007757 373 ETGQVIRTFSTGKI----PYVVKLNPDDDKQNILLAGM-------------------SDKKIVQWDMNTKEITQEYDQH- 428 (590)
Q Consensus 373 ~t~~~~~~~~~~~~----~~~~~~~~~~~~~~~lvsg~-------------------~dg~I~vwDl~t~~~~~~~~~h- 428 (590)
.+++++.++..+.. .+-+.+++.. +.+++.. ...+|.+||+.+++.+.++..-
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~---~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPN---EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTT---TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred CCCeEEEEEccCCCCccccceEEECCCC---CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 99999999875422 3345666654 4566653 3789999999999888887642
Q ss_pred C-CceeEEEE--eCCCCEEEEEe------CCCcEEEEECCCCcE--EEEeecCC-----------------CCcccEEEE
Q 007757 429 L-GAVNTITF--VDSNRRFVTSS------DDKSLRVWEFGIPVV--IKYISEPH-----------------MHSMPSISL 480 (590)
Q Consensus 429 ~-~~V~~i~~--~p~~~~l~s~s------~Dg~I~iwdl~~~~~--~~~~~~~~-----------------~~~i~~i~~ 480 (590)
. .....|.| +|+++++.+++ .+++|.+|....+.. .+.+..+. ......|.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 1 23455656 99999887776 566888776644321 11111011 234678999
Q ss_pred cCCCCEEEEEEc-CCeEEEEEccCceeecccccc-cC-----------cccccceEEEEEcCCCCEEEEEe
Q 007757 481 HPNTNWLAAQSL-DNQILIYSTRERFQLNKKKRF-AG-----------HIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 481 sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~-~~-----------~~~~~~v~~v~~spdg~~l~sgs 538 (590)
++++++|.++.. .+.|.+||+............ .+ ....+.-..++++|||++|+++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988876 588999998633211111111 11 10111245699999999999888
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=1.5e-08 Score=102.24 Aligned_cols=293 Identities=9% Similarity=0.029 Sum_probs=178.9
Q ss_pred ccccccceeecCCCc-cccCCCCccCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc
Q 007757 263 ETDYQGRSWIAPPKD-AKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG 341 (590)
Q Consensus 263 ~~d~~~r~w~~~~~~-~~~~~~~~~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~ 341 (590)
..|..++.|+..... +...+ ...+.+..+..+...+.++...++ +. |+.++.+ |..+|. +++.+..+..
T Consensus 26 ~~d~~g~l~v~t~~~~l~~~d----~~g~~~~~~~~~~~~~~~~~~~~~-g~-l~v~t~~--l~~~d~--~g~~~~~~~~ 95 (330)
T 3hxj_A 26 ILAKNGTIYLGSSNKNLYAIN----TDGSVKWFFKSGEIIECRPSIGKD-GT-IYFGSDK--VYAINP--DGTEKWRFDT 95 (330)
T ss_dssp EECTTSCEECSSTTTTTEEEC----TTSCEEESSCGGGEEEECCEETTT-TE-ECCSSCE--EEEECC--CGGGGGGSCC
T ss_pred eEccCCeEEEEcCCCEEEEEC----CCCcEEEEEecCCCcccceEEecC-Cc-EEEecCc--EEEECC--CCcEEEEEEC
Confidence 345566777654322 11111 122333333334445677777666 44 5555544 777775 4444433333
Q ss_pred CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCc-eEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc
Q 007757 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 420 (590)
Q Consensus 342 h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~ 420 (590)
.........+. +..|+.++.++.|..+|.. ++.+..+...... ........ ..+++++.++.|..||.. ++
T Consensus 96 ~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~----g~l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 96 KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED----GTIYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp -----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT----SCEEEECTTSEEEEECTT-SC
T ss_pred CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC----CEEEEEcCCCEEEEECCC-CC
Confidence 33333334444 5567888889999999998 7777666543322 22222222 237778888999999999 88
Q ss_pred eEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEE
Q 007757 421 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 500 (590)
Q Consensus 421 ~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd 500 (590)
.+..+......+.++.+.+++..++ ++ +.|..+| .++........ ....+.++...+++. |.+++.++.|..++
T Consensus 168 ~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAIN 241 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEEC
Confidence 8777766666778888877776554 44 8899999 56555544432 345678888888775 55567788888887
Q ss_pred ccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEE
Q 007757 501 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 580 (590)
... ..+..... .. ..+..+.+.+++ .|..++.+|.|..+|. +++.+..+......+.++...+ ++ .|..+
T Consensus 242 ~~g-~~~~~~~~-~~----~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g-~l~~g 311 (330)
T 3hxj_A 242 PDG-TEKWRFKT-GK----RIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE-NG-TIYFG 311 (330)
T ss_dssp TTS-CEEEEEEC-SS----CCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECT-TC-CEEEE
T ss_pred CCC-CEeEEeeC-CC----CccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcC-CC-EEEEE
Confidence 533 33322211 11 111224455556 5667778889999995 7888877776666667777766 44 46778
Q ss_pred eCCCcEEEe
Q 007757 581 GWDGLIKYW 589 (590)
Q Consensus 581 g~DG~I~iW 589 (590)
+.+|.|++.
T Consensus 312 t~~G~~~~~ 320 (330)
T 3hxj_A 312 TRNGKFYAL 320 (330)
T ss_dssp CTTSCEEEE
T ss_pred cCCCeEEEE
Confidence 889998864
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.04 E-value=7.3e-11 Score=122.54 Aligned_cols=223 Identities=10% Similarity=0.068 Sum_probs=124.2
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 391 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~ 391 (590)
+.+|++++.||.|+.||. .+++.+..+.. ..+.+..+..++..+++++.||.|+.||..+|+.+..+........ .
T Consensus 9 ~~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-Q 84 (369)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH-T
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc-c
Confidence 678999999999999999 68888888876 5666666677888888888999999999999988766543211000 0
Q ss_pred EecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 007757 392 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 471 (590)
Q Consensus 392 ~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~ 471 (590)
..|.-.....+++|+.++.|+.||..+|+.+..+..+. .+.++|++..+++++.++.|+.||..++..+..+...
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~- 159 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF- 159 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE-
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-
Confidence 01111012457888889999999999999988876553 2345667889999999999999999887654443211
Q ss_pred CCcccEEEEcCCC---CEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEE----EEEeCCCcEE
Q 007757 472 MHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV----MSGDGEGKCW 544 (590)
Q Consensus 472 ~~~i~~i~~sp~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l----~sgs~dg~I~ 544 (590)
.....++..+. ..+++++.+|.|..||..++..+.... +... .+....++++|... +.+ ++.++
T Consensus 160 --~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~p----v~~~~~~~~dg~~~v~~~~~~--~~~l~ 230 (369)
T 2hz6_A 160 --DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASP----VVAFYVWQREGLRKVMHINVA--VETLR 230 (369)
T ss_dssp --EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSC----EEEEEECTTSSCEEECCEEEE--HHHHH
T ss_pred --cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCc----eEEEEEecCCceEeccceeec--cccee
Confidence 11222333322 567778899999999998876554332 1111 12234556666532 122 34456
Q ss_pred EEeCCCCe
Q 007757 545 FWDWKSCK 552 (590)
Q Consensus 545 iwd~~t~~ 552 (590)
.+|..+|+
T Consensus 231 ~ld~~tG~ 238 (369)
T 2hz6_A 231 YLTFMSGE 238 (369)
T ss_dssp HHHHHHHH
T ss_pred eeehhcCC
Confidence 66665555
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=1.7e-07 Score=97.65 Aligned_cols=226 Identities=14% Similarity=0.149 Sum_probs=149.9
Q ss_pred EEe--cCCCEEEE-EeCCCeEEEEECCCC----cEEEEcc-------CC-CCceEEEEecCCCCCcEEEEEEcC------
Q 007757 350 SFC--NDGTKFLT-ASYDKNIKYWDTETG----QVIRTFS-------TG-KIPYVVKLNPDDDKQNILLAGMSD------ 408 (590)
Q Consensus 350 ~fs--pdg~~l~s-~s~Dg~I~vWd~~t~----~~~~~~~-------~~-~~~~~~~~~~~~~~~~~lvsg~~d------ 408 (590)
.++ .++++|+. +..++.|.|+|+.+. +.+.++. .+ ..+..+.+.+++ +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG----i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA----IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC----EEEEEEEETTSCSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe----EEEEcCCCcCCCCC
Confidence 346 67777665 455789999999766 6666662 12 134445555543 66666665
Q ss_pred CcEEEEECCCCceEEEEcccCC---ceeEEEEeCCCCEEEEEe-------------------CCCcEEEEECCCCcEEEE
Q 007757 409 KKIVQWDMNTKEITQEYDQHLG---AVNTITFVDSNRRFVTSS-------------------DDKSLRVWEFGIPVVIKY 466 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h~~---~V~~i~~~p~~~~l~s~s-------------------~Dg~I~iwdl~~~~~~~~ 466 (590)
+.|.++|..+.+++..+..... --..+-|+|+++.+++.. ...+|.+||+.+.+.+..
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 7899999999999988863322 234588899999888884 368999999998887777
Q ss_pred eecCCC-CcccEEEE--cCCCCEEEEEEc------CCeEEEEEccCceeeccccc-------ccCcc---------cccc
Q 007757 467 ISEPHM-HSMPSISL--HPNTNWLAAQSL------DNQILIYSTRERFQLNKKKR-------FAGHI---------VAGY 521 (590)
Q Consensus 467 ~~~~~~-~~i~~i~~--sp~g~~l~s~s~------dg~I~iwd~~~~~~~~~~~~-------~~~~~---------~~~~ 521 (590)
+..+.. .....+.| +|+++++++++. ++.|.+|....+. ...... ..+.. ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCc
Confidence 765422 23345555 999999888774 5688776554321 111110 00000 0134
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEeCC---CCeEEEEEecCCC--------------CEEEEEEcCCCCCEEEEEe
Q 007757 522 ACQVNFSPDGRFVMSGDG-EGKCWFWDWK---SCKVFRTLKCHEG--------------VCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~-dg~I~iwd~~---t~~~~~~l~~h~~--------------~V~~v~~sp~~~~~l~s~g 581 (590)
...+.+|+||++|+++.. .+.|.+||+. +.+++..+..... ....+.++| ++++|+.+.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 567999999999988774 6899999985 3466666654311 257899999 555666555
No 235
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=3e-08 Score=110.94 Aligned_cols=273 Identities=14% Similarity=0.112 Sum_probs=176.2
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCc----------e-eEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA----------V-RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~----------V-~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~ 380 (590)
+..|+.++.++.|..+|. .+++.+..+...... + ..+++ .+..|+.++.|+.|..+|..+|+.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDA-ASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 457778888999999998 688888877543221 0 12233 355788888999999999999999988
Q ss_pred ccCCCCc--eEEEEecCCCCCcEEEEEEc------CCcEEEEECCCCceEEEEcccC-----------------------
Q 007757 381 FSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHL----------------------- 429 (590)
Q Consensus 381 ~~~~~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~vwDl~t~~~~~~~~~h~----------------------- 429 (590)
+...... ..+...|.-.. ..++++.. +|.|+.+|.++|+.+..+....
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp EECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred eccCCCCCcceecCCCEEEC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 7653211 00000000001 34555543 5899999999999998875311
Q ss_pred --------CceeEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEeecC-CC-------Cc
Q 007757 430 --------GAVNTITFVDSNRRFVTSSDDK-------------------SLRVWEFGIPVVIKYISEP-HM-------HS 474 (590)
Q Consensus 430 --------~~V~~i~~~p~~~~l~s~s~Dg-------------------~I~iwdl~~~~~~~~~~~~-~~-------~~ 474 (590)
.....+++.+....++.++.++ .|..+|..+++.+-.+... +. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112468888888888887766 3999999999888776543 21 12
Q ss_pred ccEEEEcCCCC---EEEEEEcCCeEEEEEccCceeeccccccc-----------Ccc---------ccc-----------
Q 007757 475 MPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA-----------GHI---------VAG----------- 520 (590)
Q Consensus 475 i~~i~~sp~g~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-----------~~~---------~~~----------- 520 (590)
+....+..+|+ .|+.++.+|.++++|..++..+....... +.. ...
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22223334564 68888999999999998877652211100 000 000
Q ss_pred ceEEEEEcCCCCEEEEE------------------------------------eCCCcEEEEeCCCCeEEEEEecCCCCE
Q 007757 521 YACQVNFSPDGRFVMSG------------------------------------DGEGKCWFWDWKSCKVFRTLKCHEGVC 564 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sg------------------------------------s~dg~I~iwd~~t~~~~~~l~~h~~~V 564 (590)
.-..++++|+..+++.. ..+|.|..||+.+++.+..+..+.. .
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~ 460 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-W 460 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-C
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-C
Confidence 00126778877766542 1248899999999999988875433 2
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 565 IGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
....+.. .+.+|+.++.||.|++||
T Consensus 461 ~~~~~~t-~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 461 NGGTLST-AGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp CCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred cCceeEe-CCCEEEEECCcccchhhh
Confidence 2233333 456888899999999986
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.95 E-value=1.5e-06 Score=85.14 Aligned_cols=247 Identities=11% Similarity=0.015 Sum_probs=152.6
Q ss_pred EEEEEeCCCcEEEEEccCCCee----EEEeccCCCceeEEEEecCCCEEEEE-eCCCeEEEEECCCCcEEEEccCC-CCc
Q 007757 314 LILSAGMDTKVKIWDVVNSGKC----MRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETGQVIRTFSTG-KIP 387 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~----~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I~vWd~~t~~~~~~~~~~-~~~ 387 (590)
+|+.+.. +.|+.+++...... ...+......+..++|++++..|+.+ ...+.|.++++........+... ..+
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4444443 47888888322110 11222223457899999966555554 45689999999876544433322 455
Q ss_pred eEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC---CCcEEEEECCCCcEE
Q 007757 388 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD---DKSLRVWEFGIPVVI 464 (590)
Q Consensus 388 ~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~---Dg~I~iwdl~~~~~~ 464 (590)
..+.+.+.. +.++++....+.|.++++..................++++|++..|+.+.. .+.|..+++.....
T Consensus 82 ~~ia~d~~~--~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~- 158 (267)
T 1npe_A 82 EGIALDHLG--RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR- 158 (267)
T ss_dssp EEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-
T ss_pred cEEEEEecC--CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-
Confidence 667776643 356777677889999998754333333323356789999997666555543 36888888764332
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe-CCCc
Q 007757 465 KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGK 542 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~ 542 (590)
..+..........+++++++..|+.+. ..+.|.++++......... .+ ......+++. +..|+.++ ..+.
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~---~~---~~~P~gi~~d--~~~lyva~~~~~~ 230 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL---EG---LQYPFAVTSY--GKNLYYTDWKTNS 230 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE---EC---CCSEEEEEEE--TTEEEEEETTTTE
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe---cC---CCCceEEEEe--CCEEEEEECCCCe
Confidence 222222334578899999877666555 4578999998754322211 11 1222345553 44555444 5689
Q ss_pred EEEEeCCCCeEEEEEecCCC-CEEEEEEcCC
Q 007757 543 CWFWDWKSCKVFRTLKCHEG-VCIGCEWHPL 572 (590)
Q Consensus 543 I~iwd~~t~~~~~~l~~h~~-~V~~v~~sp~ 572 (590)
|..+|..+++.+..+..... ...++++.|+
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EEEEeCCCCCceEEEccccccccceeeecCc
Confidence 99999999999988875432 3677888874
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=9.3e-08 Score=102.93 Aligned_cols=223 Identities=9% Similarity=0.038 Sum_probs=148.3
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCcEEE--EccCCCCceEEEEecCCCCCcEEEEEE------------------cCCcEE
Q 007757 354 DGTKFLTASY-DKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGM------------------SDKKIV 412 (590)
Q Consensus 354 dg~~l~s~s~-Dg~I~vWd~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~lvsg~------------------~dg~I~ 412 (590)
||++|+.+.. +..|.+.|+.+.++.. .+..+..+..+.+...++. .++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEE
Confidence 7888777665 5679999999999888 4444556666665321222 4555553 346899
Q ss_pred EEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCC--------------------------------------cEE
Q 007757 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK--------------------------------------SLR 454 (590)
Q Consensus 413 vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg--------------------------------------~I~ 454 (590)
++|..+.+.+.++.--. ....+.++|+|+++++++.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999999888876322 456788999999998888553 466
Q ss_pred EEECCC--CcE-EEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceee-----cccc-cccCcccccceEE
Q 007757 455 VWEFGI--PVV-IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL-----NKKK-RFAGHIVAGYACQ 524 (590)
Q Consensus 455 iwdl~~--~~~-~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~-----~~~~-~~~~~~~~~~v~~ 524 (590)
+.|..+ ... +..+.. .....++.++|+|+++++++ .++.|.++|+.+.... .... .............
T Consensus 258 VID~~~~~~~~~~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEeCcccCCceeEEEEec--CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 777766 333 444432 23567899999999887776 5689999999854210 0000 0111111234567
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCC----------CeEEEEEecCCCCEE-----EEEEcCCCCCEEEEEe
Q 007757 525 VNFSPDGRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEGVCI-----GCEWHPLEQSKVATCG 581 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~t----------~~~~~~l~~h~~~V~-----~v~~sp~~~~~l~s~g 581 (590)
++|+|+|...++..-++.|.+||+.+ .+.+.++..|-.+-. ++.++| ++++|+++.
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~N 406 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLS 406 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEE
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcC
Confidence 99999994344556799999999977 677888887765321 123467 566666654
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.93 E-value=2.1e-07 Score=91.09 Aligned_cols=212 Identities=10% Similarity=0.060 Sum_probs=145.0
Q ss_pred eeEEEeccCCC--ceeEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC
Q 007757 334 KCMRTYMGHSK--AVRDISFCNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409 (590)
Q Consensus 334 ~~~~~~~~h~~--~V~~l~fspdg~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 409 (590)
+.+.++ .|.. ....+.|++++.++++.+. ++.|+++|+.+++.+..+..+.......+...+ ..++++.-.++
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKN 86 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCS
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCC
Confidence 445555 3443 3579999998755555543 589999999999999998765544444444443 25666667789
Q ss_pred cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCC-C---cccEEEEcCCCC
Q 007757 410 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-H---SMPSISLHPNTN 485 (590)
Q Consensus 410 ~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~-~---~i~~i~~sp~g~ 485 (590)
.+.++|..+.+.+.++...... ...+++++.+++++..++.|.++|..+.+.+..+.-... . .+..+.|. ++.
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 9999999999999888533122 233555777777777789999999999888887764321 1 24567777 665
Q ss_pred EEEEEEcCCeEEEEEccCceeeccccccc--------CcccccceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCC
Q 007757 486 WLAAQSLDNQILIYSTRERFQLNKKKRFA--------GHIVAGYACQVNFSPDGRFV-MSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 486 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~v~~spdg~~l-~sgs~dg~I~iwd~~t~ 551 (590)
.++....++.|.+.|..++.....+..-. ..........++|+|+++.| +++...+.|+..++...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 44444467899999999877655443210 01111345789999998755 55667888988887553
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.92 E-value=6.7e-09 Score=104.84 Aligned_cols=257 Identities=11% Similarity=0.040 Sum_probs=163.3
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC
Q 007757 304 AIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 304 ~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
++.+..+ + .|..++.++.|..|| .+++.+..+..+...+.++...++|. |+.++.+ |..+|. +++.+..+..
T Consensus 24 ~~~~d~~-g-~l~v~t~~~~l~~~d--~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~ 95 (330)
T 3hxj_A 24 SPILAKN-G-TIYLGSSNKNLYAIN--TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT 95 (330)
T ss_dssp CCEECTT-S-CEECSSTTTTTEEEC--TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC
T ss_pred CceEccC-C-eEEEEcCCCEEEEEC--CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC
Confidence 3344444 3 566777788899999 35666655554555567777776665 4445444 888886 5655444333
Q ss_pred CCCc-eEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 007757 384 GKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462 (590)
Q Consensus 384 ~~~~-~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~ 462 (590)
.... ....+. ...+.+++.++.|..+|.. ++....+..+...+.++...+++. ++.++.++.|..||.. +.
T Consensus 96 ~~~~~~~~~~~-----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 96 KKAIVSDFTIF-----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp -----CCEEEE-----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC
T ss_pred CCCcccCceEE-----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC
Confidence 2211 111222 2458888889999999998 877777766666677777776665 6667778999999988 66
Q ss_pred EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCc
Q 007757 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 542 (590)
Q Consensus 463 ~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~ 542 (590)
....... ....+.++.+.+++.+++. + +.|..|| .++........ . ...+.++.+.++|. |..++.++.
T Consensus 168 ~~~~~~~-~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~---~--~~~~~~~~~~~~g~-l~v~t~~~g 236 (330)
T 3hxj_A 168 EKWRFKT-NDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYA---G--YWTVTRPAISEDGT-IYVTSLDGH 236 (330)
T ss_dssp EEEEEEC-SSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECC---S--SCCCSCCEECTTSC-EEEEETTTE
T ss_pred EeEEEec-CCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEcc---C--CcceeceEECCCCe-EEEEcCCCe
Confidence 5555543 3445777788777775544 4 8899999 45433322221 1 13345577788875 455666788
Q ss_pred EEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 543 CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 543 I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
|..+| .+++.+..+......+.++.+.+ ++ .|..++.+|.|..+|
T Consensus 237 l~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 237 LYAIN-PDGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEEC-TTSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEEC
T ss_pred EEEEC-CCCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEEC
Confidence 88887 46777777765554444555554 33 577777787787765
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.90 E-value=4.4e-08 Score=100.25 Aligned_cols=222 Identities=10% Similarity=0.080 Sum_probs=139.3
Q ss_pred CceeEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEEccC------C--CCceEEEEecCCCCCcEEEEEEc-----C
Q 007757 344 KAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQVIRTFST------G--KIPYVVKLNPDDDKQNILLAGMS-----D 408 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~--Dg~I~vWd~~t~~~~~~~~~------~--~~~~~~~~~~~~~~~~~lvsg~~-----d 408 (590)
..+..|+++++|+.|++... ++.++||.+.+++. ..+.. . ..+..+.+.++ +.++++... +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~---g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN---GIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS---SEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC---CcEEEEcCCCCcCCC
Confidence 67899999999999888642 34356666555543 33321 1 22344455443 245555443 5
Q ss_pred CcEEEEECCCCceEEEEccc------CCceeEEEEeCCCCE-EEEEe---CCCcEEEEECCCCcEEEEeecCCCCccc-E
Q 007757 409 KKIVQWDMNTKEITQEYDQH------LGAVNTITFVDSNRR-FVTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMP-S 477 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h------~~~V~~i~~~p~~~~-l~s~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~i~-~ 477 (590)
+.|.+||+.+++.+..+... ...++.+++.+++.. +++.+ .++.|.+||+.+....+.+. .|..... .
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~~~ 171 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAPED 171 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSCCS
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccccc
Confidence 89999999999877766432 235689999976544 45554 57899999998877665542 2211110 1
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC-cEEEEeCC---CC--
Q 007757 478 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWK---SC-- 551 (590)
Q Consensus 478 i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-~I~iwd~~---t~-- 551 (590)
..+.+++..+.+.+.++.+..|. ..+..++|+|+|+.|+.++..+ .|+.++.. .+
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~-------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~ 232 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPH-------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL 232 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCC-------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred cceeECCEEEEeccCCCceecee-------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence 33444666666666677664442 1234699999999998887766 55555532 11
Q ss_pred ---eEEE--EEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 552 ---KVFR--TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 552 ---~~~~--~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+... ...++.+....+++++ ++.++++...++.|.+||
T Consensus 233 ~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 233 TDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp CHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEE
T ss_pred ChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEE
Confidence 0000 1123344556789999 677888888889999996
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.88 E-value=3.8e-07 Score=89.28 Aligned_cols=206 Identities=8% Similarity=-0.029 Sum_probs=139.0
Q ss_pred CcEEEEccCCCCc--eEEEEecCCCCCcEEEEEEc--CCcEEEEECCCCceEEEEcccCC-ceeEEEEeCCCCEEEEEeC
Q 007757 375 GQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 375 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvsg~~--dg~I~vwDl~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~ 449 (590)
.+.+.++..+... .-+.+.++ +.++++.+. ++.|.++|+.+++.+..+.-... ....+++.. ++.+++.-.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~d---g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEN---DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWL 84 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECST---TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETT
T ss_pred ceEEEEEECCCCCCcccEEEeCC---CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEec
Confidence 3456666665443 45555543 245554443 68999999999999888753222 233566652 345556667
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
++.+.++|..+.+.+..+..+ .. ....++++++.++++..++.|.++|..+......+..-...........+.|.
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CCEEEEEECCCCcEEEEEECC-CC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 899999999999988888654 12 23446668887777777899999999886655444332211111235567777
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-------------CCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
+|...+....++.|.+.|..+++.+..+... ......++|+|++..+++|+...+.|.+
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 6755555556789999999999999998742 1356899999976778888877777765
No 242
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.85 E-value=8e-07 Score=97.62 Aligned_cols=273 Identities=10% Similarity=0.046 Sum_probs=169.2
Q ss_pred CCEEEEEeC-CCcEEEEEccCCCeeEEEeccCCCc-----------eeEEEEecCCCE----EEEEeCCCeEEEEECCCC
Q 007757 312 GHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSKA-----------VRDISFCNDGTK----FLTASYDKNIKYWDTETG 375 (590)
Q Consensus 312 g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~~-----------V~~l~fspdg~~----l~s~s~Dg~I~vWd~~t~ 375 (590)
+..|+.++. ++.|.-+|...+++.+..+...... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456667776 8888888872267777766533211 123556544444 888889999999999999
Q ss_pred cEEEEccCCC-----CceEEEEecCCCCCcEEEEEEc------CCcEEEEECCCCceEEEEcccCCce------------
Q 007757 376 QVIRTFSTGK-----IPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAV------------ 432 (590)
Q Consensus 376 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~lvsg~~------dg~I~vwDl~t~~~~~~~~~h~~~V------------ 432 (590)
+.+....... .....-.... ..+++++. ++.|+.+|.++|+++..+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~----g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVK----DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEET----TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEeecCCCCCccceeecCCEEEC----CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 9998876543 1111001111 24556553 7999999999999988875432110
Q ss_pred --------------------------eEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCcEEEEeecC
Q 007757 433 --------------------------NTITFVDSNRRFVTSSDD----------------KSLRVWEFGIPVVIKYISEP 470 (590)
Q Consensus 433 --------------------------~~i~~~p~~~~l~s~s~D----------------g~I~iwdl~~~~~~~~~~~~ 470 (590)
..+++.+....++.++.+ ++|..+|..+++.+-.+...
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 135666777777777655 37999999999887766543
Q ss_pred CCC--------cccEEEEc-CCC---CEEEEEEcCCeEEEEEccCceeeccccccc------------Ccc---------
Q 007757 471 HMH--------SMPSISLH-PNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFA------------GHI--------- 517 (590)
Q Consensus 471 ~~~--------~i~~i~~s-p~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~------------~~~--------- 517 (590)
+.. ...-+... .+| ..++.++.+|.++++|..++..+....... +..
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~ 377 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR 377 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence 221 11112222 467 467778899999999998877654332110 000
Q ss_pred -------------cccceEEEEEcCCCCEEEEEe---------------------------------------CCCcEEE
Q 007757 518 -------------VAGYACQVNFSPDGRFVMSGD---------------------------------------GEGKCWF 545 (590)
Q Consensus 518 -------------~~~~v~~v~~spdg~~l~sgs---------------------------------------~dg~I~i 545 (590)
....-..++++|+..++++.. ..|.|..
T Consensus 378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A 457 (599)
T 1w6s_A 378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA 457 (599)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence 000001356677666654421 3578999
Q ss_pred EeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 546 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 546 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
||+.+++.+....... ++.+-.... .+.+|+.++.||.|+.||
T Consensus 458 ~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 458 YNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp ECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEE
T ss_pred EECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEE
Confidence 9999999988876321 111111111 345788899999999886
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.84 E-value=6.2e-07 Score=86.84 Aligned_cols=197 Identities=11% Similarity=0.034 Sum_probs=132.3
Q ss_pred cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC--cEEEEECCCCceEEEEcccCCc-eeEEEEeCCCCEEEEEeCCCc
Q 007757 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg--~I~vwDl~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+.+.++........-.+..++ +.++.+.+.+| .|+++|+.+++.+..+...... .-.+++.. ++.+++.-.++.
T Consensus 32 ~vv~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYRN--GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEET--TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSE
T ss_pred EEEEEecCCCCcccceEEEEC--CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCE
Confidence 456677666666554444442 36777777766 8999999999998887643322 13345542 344455556899
Q ss_pred EEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
+.+||..+.+.+..+..+. ....++++++.|+.+..++.|.++|..+......+........-..+..+.|. +|+
T Consensus 109 v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 9999999999999887533 22334457777777776888999999886655544432211111334456666 676
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecC------------CCCEEEEEEcCCCCCEEEEE
Q 007757 533 FVMSGDGEGKCWFWDWKSCKVFRTLKCH------------EGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h------------~~~V~~v~~sp~~~~~l~s~ 580 (590)
+.+..-.+..|.+.|..+++.+..+... ....+.++|+|+...+++||
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5555556889999999999999998752 13568999999655555555
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.82 E-value=8.8e-07 Score=97.08 Aligned_cols=274 Identities=14% Similarity=0.116 Sum_probs=168.4
Q ss_pred CCEEEEEeC-CCcEEEEEccCCCeeEEEeccCCC-ce----------eEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE
Q 007757 312 GHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSK-AV----------RDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 312 g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~-~V----------~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~ 379 (590)
+..|+.++. ++.|.-+|...+++.+..+..... .+ ..+++ .+..++.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 456666676 788888887226777766543221 00 12233 35678888899999999999999998
Q ss_pred EccCCCCc--eEEEEecCCCCCcEEEEEEc------CCcEEEEECCCCceEEEEcccCCc--------------------
Q 007757 380 TFSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGA-------------------- 431 (590)
Q Consensus 380 ~~~~~~~~--~~~~~~~~~~~~~~lvsg~~------dg~I~vwDl~t~~~~~~~~~h~~~-------------------- 431 (590)
.+...... ..+...|.-.+ ..+++++. ++.|+.+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EecCCCCCccceeccCCEEEC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 87654310 00000000001 34666655 799999999999998887532211
Q ss_pred ------------------eeEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCcEEEEeecCCC-----
Q 007757 432 ------------------VNTITFVDSNRRFVTSSDD----------------KSLRVWEFGIPVVIKYISEPHM----- 472 (590)
Q Consensus 432 ------------------V~~i~~~p~~~~l~s~s~D----------------g~I~iwdl~~~~~~~~~~~~~~----- 472 (590)
...+++.+....++.++.+ +.|..+|..+++.+-.+...+.
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc
Confidence 0235667766677666532 3599999999888776653221
Q ss_pred ---CcccEEEEcCCCC---EEEEEEcCCeEEEEEccCceeeccccccc------------Cccc-----------ccc--
Q 007757 473 ---HSMPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA------------GHIV-----------AGY-- 521 (590)
Q Consensus 473 ---~~i~~i~~sp~g~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~------------~~~~-----------~~~-- 521 (590)
....-+....+|+ .++.++.+|.++++|..++..+.....-. +... ...
T Consensus 299 ~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~ 378 (571)
T 2ad6_A 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI 378 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred ccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEE
Confidence 1111122224674 57778889999999998876554322110 0000 000
Q ss_pred ---------eEEEEEcCCCCEEEEEe-------------------------------------CCCcEEEEeCCCCeEEE
Q 007757 522 ---------ACQVNFSPDGRFVMSGD-------------------------------------GEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 522 ---------v~~v~~spdg~~l~sgs-------------------------------------~dg~I~iwd~~t~~~~~ 555 (590)
-..++++|+..+|++.. .+|.|..||..+++.+.
T Consensus 379 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W 458 (571)
T 2ad6_A 379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW 458 (571)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred CCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEE
Confidence 01357888877776653 35789999999999998
Q ss_pred EEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 556 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 556 ~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++..... +.+..+.. .+.+|+.++.||.|+.||
T Consensus 459 ~~~~~~~-~~~~~~~t-~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 459 TKWEKFA-AWGGTLYT-KGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EEEESSC-CCSBCEEE-TTTEEEEECTTSEEEEEE
T ss_pred EecCCCC-ccceeEEE-CCCEEEEEcCCCeEEEEE
Confidence 8874332 22222222 245777889999999886
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.82 E-value=5.8e-07 Score=87.08 Aligned_cols=196 Identities=10% Similarity=0.000 Sum_probs=136.6
Q ss_pred cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCce--eEEEEeCCCCEEEEEeCCCcE
Q 007757 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV--NTITFVDSNRRFVTSSDDKSL 453 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V--~~i~~~p~~~~l~s~s~Dg~I 453 (590)
+.+.++..........+..++ +.++++.+.+|.|+++|+.+++.+..+ - .... -.+++.. ++.+++.-.++.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEE
Confidence 456666666556544444433 377888888899999999999988887 2 2233 3355543 3556666678999
Q ss_pred EEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCE
Q 007757 454 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 454 ~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
.+||..+.+.+..+..+.. -..++ ++++.|+++..++.|.++|..+......+..-.....-..+..+.|. +|++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 9999999999998875322 23444 56888888877899999999887665554433322222344567776 7765
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEecC-------------CCCEEEEEEcCCCCCEEEEEe
Q 007757 534 VMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 534 l~sgs~dg~I~iwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~s~g 581 (590)
.+..-.+..|.+.|..+++.+..+... ....++|+|+|....+++||-
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 555546789999999999999988742 136789999997777777764
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=6.8e-07 Score=86.55 Aligned_cols=197 Identities=10% Similarity=0.110 Sum_probs=135.7
Q ss_pred eeEEEeccCCCc--eeEEEEecCCCEEEEEeCCC--eEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC
Q 007757 334 KCMRTYMGHSKA--VRDISFCNDGTKFLTASYDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409 (590)
Q Consensus 334 ~~~~~~~~h~~~--V~~l~fspdg~~l~s~s~Dg--~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 409 (590)
+.+.++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+..........+.+.++ .++++.-.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~--~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD--KIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT--EEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC--EEEEEEeeCC
Confidence 345555 45433 4788998 677777777766 89999999999999988776655544444433 5666666789
Q ss_pred cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC-CCc---ccEEEEcCCCC
Q 007757 410 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-MHS---MPSISLHPNTN 485 (590)
Q Consensus 410 ~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-~~~---i~~i~~sp~g~ 485 (590)
.+.+||..+.+.+.++.... .-..++ +++..|+.+..++.|.++|..+.+.+..+.-.. ..+ +..+.|. +|.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999999999887532 223333 567777777667889999999988888775422 223 3346676 666
Q ss_pred EEEEEEcCCeEEEEEccCceeecccccc--c-----CcccccceEEEEEcCCCCEEEEEe
Q 007757 486 WLAAQSLDNQILIYSTRERFQLNKKKRF--A-----GHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 486 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~-----~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
..+..-.++.|.+.|..++.....+..- . ........+.|+|+|+++.|++.+
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 5555556889999999887765444321 1 111123457899999887766655
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.78 E-value=1.7e-06 Score=94.75 Aligned_cols=238 Identities=14% Similarity=0.031 Sum_probs=151.2
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCC----CceeE-EEEecCCCEEEEEeC------CCeEEEEECCCCcEEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS----KAVRD-ISFCNDGTKFLTASY------DKNIKYWDTETGQVIRT 380 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~----~~V~~-l~fspdg~~l~s~s~------Dg~I~vWd~~t~~~~~~ 380 (590)
+..|+.++.|+.|..+|. .+++.+..+.... ..+.+ ... .++ .++.++. ++.|..+|..+|+.+..
T Consensus 115 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDA-KTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEEC-CCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 467888888999999998 6787777654221 12221 111 144 5555554 79999999999999988
Q ss_pred ccCCCCc---------------------------------------eEEEEecCCCCCcEEEEEEcC-------------
Q 007757 381 FSTGKIP---------------------------------------YVVKLNPDDDKQNILLAGMSD------------- 408 (590)
Q Consensus 381 ~~~~~~~---------------------------------------~~~~~~~~~~~~~~lvsg~~d------------- 408 (590)
+...... ..+.+.+. ..+++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~---~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK---LNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT---TTEEEEECCCCSCSCGGGSCSCC
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC---CCeEEEECCCCccccCCccCCCc
Confidence 7653221 01222221 2345555432
Q ss_pred ---CcEEEEECCCCceEEEEcccC--C----ceeE---EEEeCCCC---EEEEEeCCCcEEEEECCCCcEEEEeecCCC-
Q 007757 409 ---KKIVQWDMNTKEITQEYDQHL--G----AVNT---ITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHM- 472 (590)
Q Consensus 409 ---g~I~vwDl~t~~~~~~~~~h~--~----~V~~---i~~~p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~- 472 (590)
+.|..+|.++++.+..+.... . .+.. +....+|+ .++.++.+|.++++|..+++.+........
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 359999999999988875321 0 1111 22223663 577888999999999999887766543220
Q ss_pred -----------Ccc--------------------------cEEEEcCCCCEEEEEEc-----------------------
Q 007757 473 -----------HSM--------------------------PSISLHPNTNWLAAQSL----------------------- 492 (590)
Q Consensus 473 -----------~~i--------------------------~~i~~sp~g~~l~s~s~----------------------- 492 (590)
.++ ..++++|+..+|++.+.
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 111 24678888777777643
Q ss_pred --------------CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 007757 493 --------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 493 --------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
+|.|..||+.++..+.....- ..... ..+...+..|+.++.||.|+.||..+++.+.+++
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~-----~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWG-----GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCS-----BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccc-----eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 467888888877655433221 11111 1122246678889999999999999999999998
Q ss_pred cCC
Q 007757 559 CHE 561 (590)
Q Consensus 559 ~h~ 561 (590)
...
T Consensus 503 ~~~ 505 (571)
T 2ad6_A 503 MPS 505 (571)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=2e-06 Score=96.08 Aligned_cols=259 Identities=14% Similarity=0.184 Sum_probs=162.5
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCC----CceeEEEEecCCCEEEEEeC------CCeEEEEECCCCcEEEEc
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHS----KAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIRTF 381 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~----~~V~~l~fspdg~~l~s~s~------Dg~I~vWd~~t~~~~~~~ 381 (590)
+..|+.++.|+.|..+|. .+++.+..+.... ..+.+--.-.++ .++.++. +|.|..+|..+|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDA-KTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEET-TTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 457888889999999999 6888887765421 111111011134 4555433 589999999999999887
Q ss_pred cCC--CCc------------------------------eEEEEecCCCCCcEEEEEEcCC-------------------c
Q 007757 382 STG--KIP------------------------------YVVKLNPDDDKQNILLAGMSDK-------------------K 410 (590)
Q Consensus 382 ~~~--~~~------------------------------~~~~~~~~~~~~~~lvsg~~dg-------------------~ 410 (590)
... ... ....+.+. ..+++++..++ .
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~---~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE---LDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC---CCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 541 100 01233332 25677777665 4
Q ss_pred EEEEECCCCceEEEEcc--cC-------CceeEEEEeCCCC---EEEEEeCCCcEEEEECCCCcEEEEeecCC-------
Q 007757 411 IVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDSNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPH------- 471 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~--h~-------~~V~~i~~~p~~~---~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~------- 471 (590)
|..+|..+++.+..+.. |. .++....+..+++ .++.++.+|.++++|..+++.+.......
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 351 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV 351 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccc
Confidence 99999999999988864 22 2223233334564 68899999999999999988774432111
Q ss_pred ----CC------------------------cccEEEEcCCCCEEEEEE--------------------------------
Q 007757 472 ----MH------------------------SMPSISLHPNTNWLAAQS-------------------------------- 491 (590)
Q Consensus 472 ----~~------------------------~i~~i~~sp~g~~l~s~s-------------------------------- 491 (590)
.. .-..++++|+..++++..
T Consensus 352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (668)
T 1kv9_A 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV 431 (668)
T ss_dssp CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence 00 011267888777666532
Q ss_pred ----cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCE-EE
Q 007757 492 ----LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC-IG 566 (590)
Q Consensus 492 ----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V-~~ 566 (590)
.+|.|..||+.+++......... . .....+...+.+|++|+.+|.|++||..+++.+..++...+.. .-
T Consensus 432 p~~~~~g~l~A~D~~tG~~~W~~~~~~-~-----~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p 505 (668)
T 1kv9_A 432 PAAVVSGALLAWDPVKQKAAWKVPYPT-H-----WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP 505 (668)
T ss_dssp CGGGCEEEEEEEETTTTEEEEEEEESS-S-----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CCCCccceEEEEeCCCCcEEEEccCCC-C-----CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCc
Confidence 23778999998877654433211 1 1112333467899999999999999999999999998654311 12
Q ss_pred EEEcCCCCCEEEEEe
Q 007757 567 CEWHPLEQSKVATCG 581 (590)
Q Consensus 567 v~~sp~~~~~l~s~g 581 (590)
+.+..++..+++.+.
T Consensus 506 ~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 506 MTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred eEEEECCEEEEEEEe
Confidence 333332333555544
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.76 E-value=9e-06 Score=92.76 Aligned_cols=310 Identities=11% Similarity=0.134 Sum_probs=178.8
Q ss_pred cccccceeecCCCccccCCCCccCCc-ceeEEecCCCC----CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEE
Q 007757 264 TDYQGRSWIAPPKDAKAANDHCYIPK-RLVHTWSGHTK----GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT 338 (590)
Q Consensus 264 ~d~~~r~w~~~~~~~~~~~~~~~~p~-~~v~~l~gH~~----~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~ 338 (590)
.|..++.|+.....+.. |-+. .....+..+.. .|.+|...++ +.+.+ ++. +-|.+|+. ..++....
T Consensus 95 ~d~~g~lWigT~~Gl~~-----yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~-g~lwi-~t~-~gl~~~~~-~~~~~~~~ 165 (795)
T 4a2l_A 95 TDSQGRVWIGTRDGLSR-----YDEEKDIFQNFFYEKNGKHLQVNGIEEISP-EQLLI-STP-EGLIMFDI-KESKFIDD 165 (795)
T ss_dssp ECTTSCEEEEESSCEEE-----EETTTTEEEEECCEETTEECCCCEEEEEET-TEEEE-EET-TEEEEEET-TTTEEECS
T ss_pred ECCCCCEEEEeCCchhe-----eCCCCCeEEeccccccCCCceEEEEEECCC-CCEEE-EEC-CceEEEEC-CCCEEEec
Confidence 46678888876544321 1111 11222322211 1889988877 65554 444 45888987 34332211
Q ss_pred eccC-CCc-eeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC
Q 007757 339 YMGH-SKA-VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 339 ~~~h-~~~-V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl 416 (590)
..++ ... |.++...+++.+.+ ++.++-|..|+..+++............+.++..+.. ..+.+|+.++.|.+||.
T Consensus 166 ~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~--g~lwigt~~~Gl~~~~~ 242 (795)
T 4a2l_A 166 SFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSP--TRIWVATEGAGLFLINP 242 (795)
T ss_dssp SSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEET--TEEEEEEBSSCEEEEET
T ss_pred cCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC--CCEEEEECCCCeEEEeC
Confidence 1111 123 88888888876544 6665568999988876654322111222333333222 34666776666999998
Q ss_pred CCCceEEEEcc-------cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec------CCCCcccEEEEcCC
Q 007757 417 NTKEITQEYDQ-------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE------PHMHSMPSISLHPN 483 (590)
Q Consensus 417 ~t~~~~~~~~~-------h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~------~~~~~i~~i~~sp~ 483 (590)
.+++....... ....|.++...+++...+.+ .+ -|.+|+............ .....|.++...++
T Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 320 (795)
T 4a2l_A 243 KTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ 320 (795)
T ss_dssp TTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT
T ss_pred CCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC
Confidence 87754433211 13568999988888655544 44 588999877654443221 12356889998888
Q ss_pred CCEEEEEEcCCeEEEEEccCceeecc-cccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe----
Q 007757 484 TNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---- 558 (590)
Q Consensus 484 g~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~---- 558 (590)
|. |.+|+.++-|..|+......... ............|.++...++|.+ ..|+.++-|..|+..+++......
T Consensus 321 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 321 GG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDE 398 (795)
T ss_dssp SC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC---
T ss_pred cC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence 76 55667777899998754321110 000011122345888888888875 457777779999988765433221
Q ss_pred ----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 559 ----CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 559 ----~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.....|.+++..+ ++.+|..|+.++-|.+||
T Consensus 399 ~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 399 SARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp ---CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEE
T ss_pred cccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEe
Confidence 1235688888877 555355566655566653
No 250
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.75 E-value=4.9e-06 Score=91.28 Aligned_cols=274 Identities=15% Similarity=0.085 Sum_probs=166.1
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCc---------eeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEcc
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKA---------VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~---------V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~ 382 (590)
+..|+.++.++.|.-+|. .+++.+..+...... ...+++ .+..++.++.|+.|..+|..+|+.+..+.
T Consensus 68 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDA-KTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTEEEEEETTTEEEEEES-SSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEC-CCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 345666666445888998 678887776543221 012233 35578888899999999999999998876
Q ss_pred CCCC-----ce-EEEEecCC-CCCcEEEEEEc------CCcEEEEECCCCceEEEEcccCCce-----------------
Q 007757 383 TGKI-----PY-VVKLNPDD-DKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAV----------------- 432 (590)
Q Consensus 383 ~~~~-----~~-~~~~~~~~-~~~~~lvsg~~------dg~I~vwDl~t~~~~~~~~~h~~~V----------------- 432 (590)
.... .. .-.+.... .....+++++. ++.|+.+|..+|+.+.........+
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 5431 10 01111111 11125666653 7899999999999888764311000
Q ss_pred ------------------------eEEEEeCCCCEEEEEeC--------------------C----CcEEEEECCCCcEE
Q 007757 433 ------------------------NTITFVDSNRRFVTSSD--------------------D----KSLRVWEFGIPVVI 464 (590)
Q Consensus 433 ------------------------~~i~~~p~~~~l~s~s~--------------------D----g~I~iwdl~~~~~~ 464 (590)
..+++.+....++.+.. | +.|..+|..+++.+
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~ 304 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence 23466666677776653 2 58999999999888
Q ss_pred EEeecCCCC-----cccE-EEEc---CCCC---EEEEEEcCCeEEEEEccCceeeccccccc------------Cc----
Q 007757 465 KYISEPHMH-----SMPS-ISLH---PNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA------------GH---- 516 (590)
Q Consensus 465 ~~~~~~~~~-----~i~~-i~~s---p~g~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~------------~~---- 516 (590)
-.+...+.. .+.. +.+. .+|+ .++.++.+|.++++|..++..+.....-. +.
T Consensus 305 W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 384 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER 384 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred EEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEc
Confidence 776542211 1111 2222 4664 78888999999999998876553322110 00
Q ss_pred -------------ccccc-----------eEEEEEcCCCCEEEEEe---------------------------------C
Q 007757 517 -------------IVAGY-----------ACQVNFSPDGRFVMSGD---------------------------------G 539 (590)
Q Consensus 517 -------------~~~~~-----------v~~v~~spdg~~l~sgs---------------------------------~ 539 (590)
..... -..++++|+..++++.. .
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~ 464 (582)
T 1flg_A 385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH 464 (582)
T ss_dssp TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred cccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence 00000 01246677655554432 3
Q ss_pred CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
+|.|..||+.+++.+.+...+.. +..-.... .+.+|+.++.||.|+.||
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEE
Confidence 68899999999999988775432 21111111 245788899999999886
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.75 E-value=2.9e-06 Score=81.37 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=131.1
Q ss_pred cEEEEccCCCCceEEEEecCCCCCcEEEEEEcC--CcEEEEECCCCceEEEEcccCCc-eeEEEEeCCCCEEEEEeCCCc
Q 007757 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I~vwDl~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~Dg~ 452 (590)
+.+..+.+......-.+..++ +.++.+.+.. ..|+.+|+.+++.+..+.-.... --.+++. .++.++..-.++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 456666555555544444433 3566666665 48999999999998887543322 1334554 3445566667899
Q ss_pred EEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
+.+||..+.+.+..+..+.. -..+ .+++..|+++..++.|.++|..+......+..-.....-..+..+.+. +|+
T Consensus 87 v~v~D~~tl~~~~ti~~~~~--Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGE--GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEETTTTEEEEEEECSSC--CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECCcCcEEEEEeCCCC--ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999998875432 2344 456777777777899999999886655544432221112334456655 666
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEecC-------------CCCEEEEEEcCCCCCEEEEEe
Q 007757 533 FVMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 533 ~l~sgs~dg~I~iwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~s~g 581 (590)
..+..-.+..|.+.|..+++.+..+... ....++|+|+|....+++||-
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5555546779999999999999988732 135689999996665666653
No 252
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.74 E-value=2.8e-07 Score=99.27 Aligned_cols=236 Identities=9% Similarity=0.047 Sum_probs=155.8
Q ss_pred CCCCEEEEEe-CCCcEEEEEccCCCeeEEEecc-CCCceeEEEE-e-cCCCEEEEEe------------------CCCeE
Q 007757 310 KYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMG-HSKAVRDISF-C-NDGTKFLTAS------------------YDKNI 367 (590)
Q Consensus 310 ~~g~~L~sgs-~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~f-s-pdg~~l~s~s------------------~Dg~I 367 (590)
+ |++|+.+. .++.|.+-|+ ...++...+.- .......+++ + |++.++++++ +++.+
T Consensus 100 D-G~~lfVnd~~~~rVavIdl-~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 D-GRFLFMNDKANTRVARVRC-DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp E-EEEEEEEETTTTEEEEEET-TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred C-CCEEEEEcCCCCEEEEEEC-CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 5 55665554 4667999999 67787775532 2345888888 5 8999998885 34689
Q ss_pred EEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC--------------------------------------C
Q 007757 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--------------------------------------K 409 (590)
Q Consensus 368 ~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--------------------------------------g 409 (590)
.++|.++++.+..+..+..+.-+.+.+++ .++++.+.+ +
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdG---k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEG---KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSS---SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCC---CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 99999999999988875566666777653 344444422 2
Q ss_pred cEEEEECCC--Cce-EEEEcccCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCc------------EEEEeecCCCC
Q 007757 410 KIVQWDMNT--KEI-TQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPV------------VIKYISEPHMH 473 (590)
Q Consensus 410 ~I~vwDl~t--~~~-~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~------------~~~~~~~~~~~ 473 (590)
.|.+.|.++ +.. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.. ....+ ....
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~ 331 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGL 331 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCS
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCC
Confidence 477888887 444 444432 33567899999999877665 67899999998542 33333 2445
Q ss_pred cccEEEEcCCCCEEEEEEcCCeEEEEEccCce-------eecccccccCccccc---ceEEEEEcCCCCEEEEEeC---C
Q 007757 474 SMPSISLHPNTNWLAAQSLDNQILIYSTRERF-------QLNKKKRFAGHIVAG---YACQVNFSPDGRFVMSGDG---E 540 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~-------~~~~~~~~~~~~~~~---~v~~v~~spdg~~l~sgs~---d 540 (590)
....++|+|+|...++...|++|.+|++.... .......+.-+-..+ ....+.++|||++|++... |
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence 67889999999444556678999999987621 011112222211101 1112456899999998863 3
Q ss_pred Cc----------EEEEeCCCCeE
Q 007757 541 GK----------CWFWDWKSCKV 553 (590)
Q Consensus 541 g~----------I~iwd~~t~~~ 553 (590)
+. -.++|+..+++
T Consensus 412 r~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 412 RFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp SSCCCCSSCCEEEEEEECSSSSC
T ss_pred ccccCCCCCCCcceEEEcCCCcE
Confidence 32 18899966553
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.74 E-value=2.9e-05 Score=88.55 Aligned_cols=277 Identities=9% Similarity=0.034 Sum_probs=171.6
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc-------CCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG-------HSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-------h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
+...|.+|...++ +. |..|+.++-|.+|+. ..++....... ....|.++...++|.+.+ |+.+ -|.+|
T Consensus 213 ~~~~i~~i~~d~~-g~-lwigt~~~Gl~~~~~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~ 287 (795)
T 4a2l_A 213 GTKQIQAILQQSP-TR-IWVATEGAGLFLINP-KTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIY 287 (795)
T ss_dssp -CCCEEEEEEEET-TE-EEEEEBSSCEEEEET-TTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEE
T ss_pred CCCeeEEEEEcCC-CC-EEEEECCCCeEEEeC-CCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheE
Confidence 3467888888776 55 444554444888997 34433332211 135699999988887544 5555 58899
Q ss_pred ECCCCcEEEEccCC------CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc-------cCCceeEEEE
Q 007757 371 DTETGQVIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITF 437 (590)
Q Consensus 371 d~~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~-------h~~~V~~i~~ 437 (590)
|..++......... ....+.++..+.. ..+.+|+.++.|..|+..++... .+.. ....|.++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~--g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~ 364 (795)
T 4a2l_A 288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ--GGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVE 364 (795)
T ss_dssp ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT--SCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEE
T ss_pred cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC--cCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEE
Confidence 98887655433211 1123444444433 34778888888999987765432 2221 2346889988
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEEeec-------CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc
Q 007757 438 VDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 510 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-------~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 510 (590)
.+++. |..|+.++-|..|+..+......... .....|.+++..+++..|.+|+.++.|.+|+..++.... .
T Consensus 365 d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~ 442 (795)
T 4a2l_A 365 DKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-F 442 (795)
T ss_dssp CTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-E
T ss_pred CCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-e
Confidence 87775 55577777799999876654443321 123568889888888867778887889999987653221 1
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec------CCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 511 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC------HEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~------h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
...........|.++...++|++.+... . -|.+||..+++....... +...|.++...+ ++.+.+.. ..|
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt-~~G 518 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGG-EEG 518 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEE-SSC
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEEEe-CCc
Confidence 1101112235678888888888665544 4 589999887765432211 235688888887 45554444 344
Q ss_pred cEEEe
Q 007757 585 LIKYW 589 (590)
Q Consensus 585 ~I~iW 589 (590)
|.+|
T Consensus 519 -l~~~ 522 (795)
T 4a2l_A 519 -LSVF 522 (795)
T ss_dssp -EEEE
T ss_pred -eEEE
Confidence 5444
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=3.3e-06 Score=81.04 Aligned_cols=197 Identities=10% Similarity=0.090 Sum_probs=134.3
Q ss_pred eeEEEeccCCC--ceeEEEEecCCCEEEEEeCC--CeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC
Q 007757 334 KCMRTYMGHSK--AVRDISFCNDGTKFLTASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409 (590)
Q Consensus 334 ~~~~~~~~h~~--~V~~l~fspdg~~l~s~s~D--g~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg 409 (590)
+.+.++ .|.. -...+.|+. +.++.+.+.+ +.|+++|+.+++.+..+..........+...+ ..++++.-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--DRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--CEEEEEEeeCC
Confidence 455556 4543 466899986 5666666665 48999999999999998877666554444443 35677777789
Q ss_pred cEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC-C---CcccEEEEcCCCC
Q 007757 410 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-M---HSMPSISLHPNTN 485 (590)
Q Consensus 410 ~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~-~---~~i~~i~~sp~g~ 485 (590)
.+.+||..+.+.+.++.... .-..++ +++..|+.+..++.|.++|..+.+.+..+.... . ..++.+.+. +|.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999999987533 224444 466777777778999999999988887775421 1 233455555 565
Q ss_pred EEEEEEcCCeEEEEEccCceeeccccccc--C------cccccceEEEEEcCCCCEEEEEe
Q 007757 486 WLAAQSLDNQILIYSTRERFQLNKKKRFA--G------HIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 486 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~------~~~~~~v~~v~~spdg~~l~sgs 538 (590)
.++..-.++.|.+.|..++..+..+..-. . .......+.|+++|+++.|++.+
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 55554467899999998877654433211 0 11223567899999876665544
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.68 E-value=9.5e-06 Score=89.06 Aligned_cols=255 Identities=14% Similarity=0.098 Sum_probs=156.0
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEEEeccCC----CceeE-EEEecCCCEEEEEe------CCCeEEEEECCCCcEEEEcc
Q 007757 314 LILSAGMDTKVKIWDVVNSGKCMRTYMGHS----KAVRD-ISFCNDGTKFLTAS------YDKNIKYWDTETGQVIRTFS 382 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~----~~V~~-l~fspdg~~l~s~s------~Dg~I~vWd~~t~~~~~~~~ 382 (590)
+|+.++.|+.|..+|. .+++.+....... ..+.+ -.+ .++ .+++++ .++.|+.+|..+|+.+..+.
T Consensus 123 rV~v~t~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNA-ETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEEC-CCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 3788888999999998 6787776654322 12221 111 144 455554 37999999999999998876
Q ss_pred CCCCce---------------------------------------EEEEecCCCCCcEEEEEEcC---------------
Q 007757 383 TGKIPY---------------------------------------VVKLNPDDDKQNILLAGMSD--------------- 408 (590)
Q Consensus 383 ~~~~~~---------------------------------------~~~~~~~~~~~~~lvsg~~d--------------- 408 (590)
...... ...+.+ ...+++.+..+
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~---~~g~vy~g~g~~~p~~~~~r~gd~~y 276 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP---GTNLIYFGTGNPAPWNETMRPGDNKW 276 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET---TTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC---CCCEEEEeCCCCccccCcccCCCccc
Confidence 543210 112222 22466766655
Q ss_pred -CcEEEEECCCCceEEEEcccCC---------ceeEEEEe-CCC---CEEEEEeCCCcEEEEECCCCcEEEEeecCC---
Q 007757 409 -KKIVQWDMNTKEITQEYDQHLG---------AVNTITFV-DSN---RRFVTSSDDKSLRVWEFGIPVVIKYISEPH--- 471 (590)
Q Consensus 409 -g~I~vwDl~t~~~~~~~~~h~~---------~V~~i~~~-p~~---~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~--- 471 (590)
+.|..+|..+++.+..++.... ...-+... .+| ..++.++.+|.++++|..+++.+.......
T Consensus 277 ~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 356 (599)
T 1w6s_A 277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN 356 (599)
T ss_dssp SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred cceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence 3899999999999988764321 11112222 456 467778999999999999988876554211
Q ss_pred ---------CCc--------------------------ccEEEEcCCCCEEEEEE-------------------------
Q 007757 472 ---------MHS--------------------------MPSISLHPNTNWLAAQS------------------------- 491 (590)
Q Consensus 472 ---------~~~--------------------------i~~i~~sp~g~~l~s~s------------------------- 491 (590)
..+ -..++++|+..+|++..
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 001 12467777776665542
Q ss_pred --------------cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 007757 492 --------------LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557 (590)
Q Consensus 492 --------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l 557 (590)
..|.|..||+.+++.+-.... ......+. +...+.+|+.++.||.|+.||.++|+.+.++
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~-----~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGT-----MATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBC-----EEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcc-----eEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 235677777776654433321 11111111 1225678888999999999999999999999
Q ss_pred ecCCCCE-EEEEEcCCCCCEEEEE
Q 007757 558 KCHEGVC-IGCEWHPLEQSKVATC 580 (590)
Q Consensus 558 ~~h~~~V-~~v~~sp~~~~~l~s~ 580 (590)
+...+.+ .-+.|..++..+|++.
T Consensus 511 ~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 511 KIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEE
T ss_pred eCCCCcEeccEEEEeCCEEEEEEE
Confidence 8654322 1244444344455443
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.66 E-value=2.9e-05 Score=77.66 Aligned_cols=237 Identities=9% Similarity=-0.003 Sum_probs=139.3
Q ss_pred eeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC--CcE
Q 007757 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKI 411 (590)
Q Consensus 334 ~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d--g~I 411 (590)
+.+..+... .....++|+++|+++++-..++.|..||... .....+.....+..+.+.+++ +++++.... ..|
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG---~l~vad~~~~~~~v 97 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG---DLVATGWNADSIPV 97 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS---CEEEEEECTTSCEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC---cEEEEeccCCcceE
Confidence 344444322 4577899999998777766789999999875 444444455555666666543 455555433 257
Q ss_pred EEEECCCCceEEEEcc-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE-EEEee------c--CCCCcccEEEEc
Q 007757 412 VQWDMNTKEITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV-IKYIS------E--PHMHSMPSISLH 481 (590)
Q Consensus 412 ~vwDl~t~~~~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~-~~~~~------~--~~~~~i~~i~~s 481 (590)
..+|..+++....... .......++..+.+..+++...++.|+++|...... +.... . ........| +
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 7788888875443321 122334555555554555555688999999765421 21110 0 111123344 7
Q ss_pred CCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEe
Q 007757 482 PNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLK 558 (590)
Q Consensus 482 p~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~--~l~ 558 (590)
+++++|+++. ..+.|..|++.....+.....+.. ......++++++|+++++....+.|.++|.. ++... .+.
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 8887766655 567899999864111111111110 0123348999999887777778899999975 65533 233
Q ss_pred cCCCCEEEEEEc---CCCCCEEEEEe
Q 007757 559 CHEGVCIGCEWH---PLEQSKVATCG 581 (590)
Q Consensus 559 ~h~~~V~~v~~s---p~~~~~l~s~g 581 (590)
.....+++++|. |+...++++..
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred cccCCceEEEEecccCCCCEEEEECC
Confidence 333568999998 74444444443
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.65 E-value=9.4e-06 Score=81.82 Aligned_cols=235 Identities=11% Similarity=0.088 Sum_probs=146.7
Q ss_pred CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC--------------------CCCceEEEEecCCCCCcEEE
Q 007757 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--------------------GKIPYVVKLNPDDDKQNILL 403 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~lv 403 (590)
....+++|.++|++++++..++.|..|+..++........ ...+..+.+.+. . ..|+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~--~-g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ--N-NQLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT--T-TEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC--C-CcEE
Confidence 4467789999998888888899999999887654321110 123445555541 1 2355
Q ss_pred EEEcCCcEEEEECCCCceEEEEc---c-cCCceeEEEEeC-CCCEEEEEeC-----------------CCcEEEEECCCC
Q 007757 404 AGMSDKKIVQWDMNTKEITQEYD---Q-HLGAVNTITFVD-SNRRFVTSSD-----------------DKSLRVWEFGIP 461 (590)
Q Consensus 404 sg~~dg~I~vwDl~t~~~~~~~~---~-h~~~V~~i~~~p-~~~~l~s~s~-----------------Dg~I~iwdl~~~ 461 (590)
++...+.|..+|..++....... + .....+.+++.+ +|+.+++... ++.|..||....
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 55555668999987664322211 1 123468899999 8887776543 367888887665
Q ss_pred cEEEEeecCCCCcccEEEEcCCCCEEEEE-EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC-
Q 007757 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG- 539 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~- 539 (590)
....... .......|+++|++++|+++ +..+.|.+|++..... .....+.. ..+ ...+++.++|++.++...
T Consensus 176 ~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 176 ETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVK--IPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp EEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEE--CSS-EEEEEECTTSCEEEEEEEE
T ss_pred EEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEe--CCC-CCCeEECCCCCEEEEecCc
Confidence 4432221 12345679999999877666 4568999999875211 01111111 112 556899999987766544
Q ss_pred ---------CCcEEEEeCCCCeEEEEEecCC----CCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 540 ---------EGKCWFWDWKSCKVFRTLKCHE----GVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 540 ---------dg~I~iwd~~t~~~~~~l~~h~----~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.+.|..+|. .++.+..+.... ..+.++++. ++.++++....+.|.+++
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEE
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEe
Confidence 467888986 577777776543 346667663 455566655667777653
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=5.9e-06 Score=80.00 Aligned_cols=190 Identities=11% Similarity=0.128 Sum_probs=134.8
Q ss_pred ceeEEecCCCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEE-EeCCCe
Q 007757 290 RLVHTWSGHTK--GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKN 366 (590)
Q Consensus 290 ~~v~~l~gH~~--~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg~ 366 (590)
+++.++ .|.. -...|.|+. +.++++.+.+|.|+++|+ .+++.+..+ -..........+++..|+. .-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~-~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSL-ESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEETTTTEEEECCS-SCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEEC--CEEEEEcCCCCEEEEEEC-CCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCE
Confidence 567777 4543 347888873 678888899999999999 678777776 2233444333344444544 445799
Q ss_pred EEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccC-----CceeEEEEeCCC
Q 007757 367 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-----GAVNTITFVDSN 441 (590)
Q Consensus 367 I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~-----~~V~~i~~~p~~ 441 (590)
+.+||..+.+.+.++........++ +++ ..|+.+..++.|+++|..+.+.+..+.-.. ..++.+.|. +|
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg---~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEGWGLC--YWN---GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCCCCEE--EET---TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEECCcCcEEEEEeCCCceeEEe--cCC---CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence 9999999999999998765554444 332 345555678999999999999888775422 245778887 67
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeecC------------CCCcccEEEEcCCCCEEEEEE
Q 007757 442 RRFVTSSDDKSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 442 ~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~l~s~s 491 (590)
+.++..-.+..|.+.|..+++.+..+... ...-...|+++|+++.|++.+
T Consensus 192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 66666667889999999999988887532 123467899999876666654
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=2.6e-05 Score=85.55 Aligned_cols=259 Identities=14% Similarity=0.159 Sum_probs=158.1
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCC----cee-EEEEec---CCC-EEEEEe------CCCeEEEEECCCCc
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK----AVR-DISFCN---DGT-KFLTAS------YDKNIKYWDTETGQ 376 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~----~V~-~l~fsp---dg~-~l~s~s------~Dg~I~vWd~~t~~ 376 (590)
+..|+.++.|+.|..+|. .+++.+..+..... .+. .-.+.. +|+ .+++++ .++.|..+|..+|+
T Consensus 117 ~~~v~~~t~dg~l~AlD~-~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNK-NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEES-SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEEC-CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 467888889999999999 67887776653321 111 111121 233 565554 37899999999999
Q ss_pred EEEEccCCCCce------------------------------------------EEEEecCCCCCcEEEEEEc-------
Q 007757 377 VIRTFSTGKIPY------------------------------------------VVKLNPDDDKQNILLAGMS------- 407 (590)
Q Consensus 377 ~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~lvsg~~------- 407 (590)
.+.......... ..++.+ ...+++++..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~---~~g~vyv~~gn~~~~~~ 272 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA---ETNTIIVGAGNPGPWNT 272 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET---TTTEEEEEECCBSSSCG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC---CCCEEEEeCCCCCcccC
Confidence 988765421100 011111 2245666553
Q ss_pred -------------C----CcEEEEECCCCceEEEEcc--cCC----ceeE-EEEe---CCCC---EEEEEeCCCcEEEEE
Q 007757 408 -------------D----KKIVQWDMNTKEITQEYDQ--HLG----AVNT-ITFV---DSNR---RFVTSSDDKSLRVWE 457 (590)
Q Consensus 408 -------------d----g~I~vwDl~t~~~~~~~~~--h~~----~V~~-i~~~---p~~~---~l~s~s~Dg~I~iwd 457 (590)
| +.|..+|..+++.+..++. |.. .+.. +.+. .+|+ .++.++.+|.++++|
T Consensus 273 ~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 273 WARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred cccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEE
Confidence 2 5899999999999988853 211 1111 2222 3563 788899999999999
Q ss_pred CCCCcEEEEeecCCC------------Cc--------------------------------ccEEEEcCCCCEEEEEEc-
Q 007757 458 FGIPVVIKYISEPHM------------HS--------------------------------MPSISLHPNTNWLAAQSL- 492 (590)
Q Consensus 458 l~~~~~~~~~~~~~~------------~~--------------------------------i~~i~~sp~g~~l~s~s~- 492 (590)
..+++.+........ .+ ...++++|+...+++...
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 998887765543210 00 113566776555555432
Q ss_pred --------------------------------CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC
Q 007757 493 --------------------------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 540 (590)
Q Consensus 493 --------------------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d 540 (590)
+|.|..||+.+++.+-..... .....+. +...+.+|+.|+.|
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~-----~~tagglvf~g~~d 506 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGV-----LATAGNLVFTGTGD 506 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCC-----EEETTTEEEEECTT
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccc-----eEeCCCEEEEECCC
Confidence 477888888877655433321 1111111 11246788889999
Q ss_pred CcEEEEeCCCCeEEEEEecCCCCE-EEEEEcCCCCCEEEEE
Q 007757 541 GKCWFWDWKSCKVFRTLKCHEGVC-IGCEWHPLEQSKVATC 580 (590)
Q Consensus 541 g~I~iwd~~t~~~~~~l~~h~~~V-~~v~~sp~~~~~l~s~ 580 (590)
|.|+.||.++|+.+.+++...+.+ .-+.|..++..+|++.
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 999999999999999998654422 1255555344455544
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.62 E-value=2.1e-05 Score=78.75 Aligned_cols=239 Identities=10% Similarity=0.036 Sum_probs=145.1
Q ss_pred CCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC--
Q 007757 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-- 364 (590)
Q Consensus 287 ~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D-- 364 (590)
.+.+++..|..+ .....++|.++ ++++++...++.|..||. .+.....+. .......+++.++|+++++....
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~--~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITP--DGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECT--TCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred CCceEeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECC--CCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCc
Confidence 445667777544 56789999998 887777778899999987 233333332 34568899999999966655432
Q ss_pred CeEEEEECCCCcEEEEccCC--CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce-EEEEc---------ccCCce
Q 007757 365 KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYD---------QHLGAV 432 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~-~~~~~---------~h~~~V 432 (590)
..|..+|..+++........ ......+... ...++++-..++.|+++|..++.. +.... ......
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~---~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLS---DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESS---SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCcccccC---CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 24777788888765433322 2222222221 223444444689999999876532 21111 111234
Q ss_pred eEEEEeCCCCEEE-EEeCCCcEEEEECCC-CcE--EEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec
Q 007757 433 NTITFVDSNRRFV-TSSDDKSLRVWEFGI-PVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 433 ~~i~~~p~~~~l~-s~s~Dg~I~iwdl~~-~~~--~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
+.| ++++++|+ +-+..+.|..|++.. +.. ...+.. ......++++++|+++++....+.|.+|+.... ...
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~-~~~ 246 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTI 246 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEE
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCCCC-EEE
Confidence 555 77776554 445678899999864 211 111111 134677999999988777777889999987532 211
Q ss_pred ccccccCcccccceEEEEEc---CCCCEEEEEeCCC
Q 007757 509 KKKRFAGHIVAGYACQVNFS---PDGRFVMSGDGEG 541 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~s---pdg~~l~sgs~dg 541 (590)
...... ......+++|. |+++.|++.+..+
T Consensus 247 -~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 247 -IAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -EECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -Eeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 111111 12446789998 8988877766543
No 261
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.62 E-value=2.9e-05 Score=75.81 Aligned_cols=222 Identities=12% Similarity=0.048 Sum_probs=135.4
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEE-eCCCeEEEEECCCCcEE
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETGQVI 378 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I~vWd~~t~~~~ 378 (590)
..+.+++|+++++.++++-...+.|.++++ ........+.........+++++++..|+.+ ...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~-~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASL-HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEES-SSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEec-CCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 357899999974666666667889999998 3333333333333567899999976555544 45689999998754332
Q ss_pred EEccCC-CCceEEEEecCCCCCcEEEEEEc--CCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEE-EEEeCCCcEE
Q 007757 379 RTFSTG-KIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRF-VTSSDDKSLR 454 (590)
Q Consensus 379 ~~~~~~-~~~~~~~~~~~~~~~~~lvsg~~--dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l-~s~s~Dg~I~ 454 (590)
...... ..+..+.+.+.. +.++++... .+.|..+++..................+++++++..| ++....+.|.
T Consensus 115 ~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp EEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 222222 455667777643 245555443 4789888886433222222334567899999987655 4555668899
Q ss_pred EEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 455 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
++++........+. . ......+++. +..|+++. ..+.|.++|..++..+..+..-.. .....+++.|++.
T Consensus 193 ~~~~~g~~~~~~~~-~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~----~~p~gi~~~~~~~ 263 (267)
T 1npe_A 193 CLNPAQPGRRKVLE-G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ----TRLYGITIALSQC 263 (267)
T ss_dssp EEETTEEEEEEEEE-C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC----CCCCCEEEECSCC
T ss_pred EEecCCCceEEEec-C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc----cccceeeecCccC
Confidence 99987544333332 2 2233466654 45555555 558999999987665544332111 1123467777654
No 262
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.60 E-value=2e-05 Score=79.34 Aligned_cols=242 Identities=12% Similarity=0.094 Sum_probs=142.4
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEecc--------------------CCCceeEEEEec-
Q 007757 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG--------------------HSKAVRDISFCN- 353 (590)
Q Consensus 295 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--------------------h~~~V~~l~fsp- 353 (590)
+.+.-....+++|.++ +++++++..++.|..|+. ..+. +..+.. ....+..|++.+
T Consensus 14 ~~g~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDST-NKGFYTSVQDGRVIKYEG-PNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp EECSSSCCCCEECCTT-CSSEEEECTTSEEEEECC-TTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred cCCccCCceEEEEcCC-CCEEEEEcCCCeEEEECC-CCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 4444445678889998 887888888999999987 3332 222221 113578899998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEcc--CC---CCceEEEEec-CCCCCcEEEEEEc-----------------CCc
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRTFS--TG---KIPYVVKLNP-DDDKQNILLAGMS-----------------DKK 410 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~--~~---~~~~~~~~~~-~~~~~~~lvsg~~-----------------dg~ 410 (590)
+++ |+.+...+.|.++|..++....... .+ ..+..+.+.+ ++ +++++-.. ++.
T Consensus 91 ~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G---~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 91 NNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG---IVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC---CEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC---EEEEECCcccccccccceehcccCCCce
Confidence 554 5556555668889887654322111 11 1233445544 32 45554322 367
Q ss_pred EEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE-eCCCcEEEEECCCCc--EEEEeecCCCCcccEEEEcCCCCEE
Q 007757 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPNTNWL 487 (590)
Q Consensus 411 I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~-s~Dg~I~iwdl~~~~--~~~~~~~~~~~~i~~i~~sp~g~~l 487 (590)
|..||..+++..... ......+.|+++++++.|+.+ +..+.|.+|++.... ....+.. ... ...+++.++|++.
T Consensus 167 v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 167 LIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFW 243 (322)
T ss_dssp EEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEE
T ss_pred EEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEE
Confidence 899998777643322 223456789999999866555 566889999987421 1122221 122 6789999999876
Q ss_pred EEEEc----------CCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 488 AAQSL----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 488 ~s~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
++... .+.|..+|... ..+..+....+.. ...++.+++ .+++++++....+.|..+++.
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~~G-~~~~~~~~~~g~~-~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDEFG-NILEVIPLPPPFA-GEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECTTS-CEEEEEECCTTTT-TSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred EEecCcccccccCCCccEEEEECCCC-CEEEEEECCCCCc-cccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 66554 46688887643 3332222111110 122344555 356555555567788888865
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=0.00012 Score=83.14 Aligned_cols=278 Identities=8% Similarity=0.035 Sum_probs=164.9
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec--------------cCCCceeEEEEecCCCEEEEEeCC
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--------------GHSKAVRDISFCNDGTKFLTASYD 364 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--------------~h~~~V~~l~fspdg~~l~s~s~D 364 (590)
...|.+|...++ + .|..|+..+-|.+++. .......... -....|.++...++|. |..|+.+
T Consensus 257 ~~~i~~i~~d~~-g-~lWigt~~~Gl~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKD-N-KLWIATELNGIMILDL-QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTT-S-EEEEEESSSCEEEEET-TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBS
T ss_pred CceEEEEEECCC-C-CEEEEeCCCCeEEECC-CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecC
Confidence 456999988776 4 4556676556888887 3332221111 1345799999988876 6667777
Q ss_pred CeEEEEECCCCcEEEEcc-------CC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE---cccCCcee
Q 007757 365 KNIKYWDTETGQVIRTFS-------TG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVN 433 (590)
Q Consensus 365 g~I~vWd~~t~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~---~~h~~~V~ 433 (590)
+-|..++..+........ .. ....+.++..+.. ..|.+|+.++.|..||..++...... ......|.
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ--GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT--SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC--CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 889999987665433211 00 1223444444433 34777887788999998765432211 12345788
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeec--CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE--PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 434 ~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
++...+++... .|+.++-|..++..+.... .+.. .....|.++...+++. |.+++. +.|.+|+..+........
T Consensus 411 ~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 411 CSLKDSEGNLW-FGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEECTTSCEE-EEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEEC
T ss_pred EEEECCCCCEE-EEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEeccc
Confidence 88887777544 4666667888988665433 3321 1345688888887775 444555 668899876543211111
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec----CCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC----HEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~----h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
..........+.++...++|++.+.....| |..||..+++.. .+.. ....|.++...+ ++.+.++ +.+|.|.
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~-~g~lWi~-T~~Glv~ 562 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSS-KGQMWLA-TGEGLVC 562 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECT-TSCEEEE-ETTEEEE
T ss_pred CcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECC-CCCEEEE-ECCCceE
Confidence 000111135678888999998665443344 888998766543 3331 234688888877 4554444 4466646
Q ss_pred EeC
Q 007757 588 YWD 590 (590)
Q Consensus 588 iWD 590 (590)
.||
T Consensus 563 ~~d 565 (781)
T 3v9f_A 563 FPS 565 (781)
T ss_dssp ESC
T ss_pred EEC
Confidence 654
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.45 E-value=0.00021 Score=72.99 Aligned_cols=247 Identities=7% Similarity=-0.052 Sum_probs=150.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEE-EEeCCCeEEEEECCCCcE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQV 377 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~ 377 (590)
....+|.+..+. + +|+.+ ....|+..++ .+.....+......+..++|++....|+ +-...+.|..+++..+..
T Consensus 33 ~d~~~C~~~~~~-~-~ll~~-~~~~I~~i~~--~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 33 PDRRSCKALGPE-P-VLLFA-NRIDIRQVLP--HRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TTSSCEEESSSC-C-EEEEE-CBSCEEEECT--TSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCcccccccC-c-eeEee-cccceEEEeC--CCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 344566666554 4 33333 3355777777 3333333333445588999998555555 444678999999987654
Q ss_pred EEEccC-CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEE-eCC-CcEE
Q 007757 378 IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDD-KSLR 454 (590)
Q Consensus 378 ~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~-s~D-g~I~ 454 (590)
...+.. ...+..+++.+.. ++++++-...+.|.++++........+.........|++.|.+..|+.+ ... +.|.
T Consensus 108 ~~~~~~~~~~p~glavd~~~--g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVH--DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp EEEECSSCSCCCEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eEEEeCCCCCccEEEEecCC--CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 443332 2345566666543 3677777778899999987654444444445667899999866555544 444 7788
Q ss_pred EEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCE
Q 007757 455 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 533 (590)
Q Consensus 455 iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 533 (590)
.+++...... .+..........|+++|++..|+.+. ..+.|..+++......... ... ......+++ ..+.+
T Consensus 186 r~~~dG~~~~-~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~---~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 186 ASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI---SQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEETTSCSCE-ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSS--CSSEEEEEE-ETTEE
T ss_pred EEeCCCCCcE-EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE---eCC--CCCceEEEE-ECCEE
Confidence 8887654332 22222344567899998777666655 4578999998653322111 111 123345666 34555
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEec
Q 007757 534 VMSGDGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 534 l~sgs~dg~I~iwd~~t~~~~~~l~~ 559 (590)
.++-...+.|..++..+++.+..+..
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCCeEEEEEccCCCccEEecc
Confidence 55555678898888767766665543
No 265
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=7.3e-05 Score=78.77 Aligned_cols=240 Identities=10% Similarity=0.008 Sum_probs=142.2
Q ss_pred ceeEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCC----cEEEEECCCC
Q 007757 345 AVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK----KIVQWDMNTK 419 (590)
Q Consensus 345 ~V~~l~fsp-dg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg----~I~vwDl~t~ 419 (590)
....|+|+| ++..|+.+...+.|+.+|+.++...........+..+++.+.+. .++++...++ .+..++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~--~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEAD--SMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSS--EEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCC--EEEEEeCCCCcccceEEEEeC-CC
Confidence 457899997 45566666655899999998877666555555667777776542 3555544332 2343443 33
Q ss_pred ceE--EEEcccCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEE-EcCCe
Q 007757 420 EIT--QEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQ 495 (590)
Q Consensus 420 ~~~--~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~-s~dg~ 495 (590)
... ..+. .......++++| ++..+++-...+.|..++....................|+|+|++++|+++ ...+.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 221 2222 234567888999 677777777788999999876654333333333456789999999965555 45688
Q ss_pred EEEEEccCc-eeecccccccC------cc-------cccceE-EEEEc--------CCCCEEEEEeCCCcEEEEeCCCCe
Q 007757 496 ILIYSTRER-FQLNKKKRFAG------HI-------VAGYAC-QVNFS--------PDGRFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 496 I~iwd~~~~-~~~~~~~~~~~------~~-------~~~~v~-~v~~s--------pdg~~l~sgs~dg~I~iwd~~t~~ 552 (590)
|..++.... ..+.....+.+ .. .-.... .+++. ++|.+.++-...+.|+.++ .++.
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence 999886532 11100011110 00 001112 34443 4466666656678899988 5565
Q ss_pred EEEEEec----C----C---------CCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 553 VFRTLKC----H----E---------GVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 553 ~~~~l~~----h----~---------~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.....-. . . .....+++.|+++.++++-.....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 4433321 0 1 1478999998556666666666777765
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.42 E-value=0.0002 Score=74.17 Aligned_cols=255 Identities=7% Similarity=-0.045 Sum_probs=154.0
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIR 379 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~ 379 (590)
.-+|.+..+. + +|+.+ ....|+..++ ...... .+......+..++|++.+..|+ +-...+.|..+++.......
T Consensus 78 ~~~C~~~~~~-~-~l~~~-~~~~I~~i~~-~~~~~~-~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 78 RRSCKALGPE-P-VLLFA-NRIDIRQVLP-HRSEYT-LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SSCEEECSSC-C-EEEEE-CBSCEEEECT-TSCCCE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CCeECCcccc-c-eeEee-cCccceeecc-CCCcEE-EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 3445555553 3 34333 3356888887 333333 3333445688999998555554 54567899999998776544
Q ss_pred EccCC-CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEe-CC-CcEEEE
Q 007757 380 TFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DD-KSLRVW 456 (590)
Q Consensus 380 ~~~~~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~D-g~I~iw 456 (590)
.+..+ ..+..+++.+.. ++++++-...+.|.++++........+.........|++.|.+..|+.+. .. +.|..+
T Consensus 153 ~~~~~~~~p~glavd~~~--g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVH--DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp EECSSCSCCCCEEEETTT--TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred EEeCCCCCccEEEEEeCC--CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 43322 344456666533 36677777788899999876554444444456778999998766655554 34 678888
Q ss_pred ECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEE
Q 007757 457 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 457 dl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
++......... .........|+++|++..|+.+. ..+.|..+++......... ... ......+++ ..+.+++
T Consensus 231 ~~dG~~~~~~~-~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 231 SMDGSGRRIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI---SQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp ETTSCSCEEEE-CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE---CSS--CSSEEEEEE-ETTEEEE
T ss_pred eCCCCCcEEEE-ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE---ECC--CCCceEEEE-ECCEEEE
Confidence 87654433332 22344567899998776666654 4578999988653222111 111 123345677 3445555
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEE
Q 007757 536 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 569 (590)
Q Consensus 536 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~ 569 (590)
+-...+.|..++..+++.+..+........++++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 6667788999997777776666543333344433
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.37 E-value=0.0016 Score=65.26 Aligned_cols=228 Identities=6% Similarity=-0.076 Sum_probs=138.7
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEE-EEeCCCeEEEEECCC----CcEEEEccC-CCCceEEEEecC
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTET----GQVIRTFST-GKIPYVVKLNPD 395 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t----~~~~~~~~~-~~~~~~~~~~~~ 395 (590)
..|+..++ ........+. ....+..++|++.+..|+ +-...+.|..+++.. ......+.. ...+..+++.+.
T Consensus 10 ~~I~~i~~-~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTL-DRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEET-TSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEEC-CCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 56888888 3444444333 445678999998655555 445568999999876 222222222 234556666654
Q ss_pred CCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC--CcEEEEECCCCcEEEEeecCCCC
Q 007757 396 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD--KSLRVWEFGIPVVIKYISEPHMH 473 (590)
Q Consensus 396 ~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D--g~I~iwdl~~~~~~~~~~~~~~~ 473 (590)
. ++++++-...+.|.++++........+.........|++.|.+..|+.+... +.|..+++..... ..+......
T Consensus 88 ~--~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~~~~ 164 (316)
T 1ijq_A 88 H--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQ 164 (316)
T ss_dssp T--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCS
T ss_pred C--CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEECCCC
Confidence 3 3566776778899999987654443344345677899999876666555443 6788888764433 233222345
Q ss_pred cccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 007757 474 SMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 474 ~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~ 552 (590)
....+++++++..|+.+. ..+.|..+++...... .+...... ......+++. .+.++++-...+.|..++..+++
T Consensus 165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~--~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKR--LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTT--TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCc--cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 577899999877776665 4578999998753221 11111001 1223456664 35555566677889999987776
Q ss_pred EEEEEe
Q 007757 553 VFRTLK 558 (590)
Q Consensus 553 ~~~~l~ 558 (590)
.+..+.
T Consensus 241 ~~~~i~ 246 (316)
T 1ijq_A 241 DVNLLA 246 (316)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 655554
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.37 E-value=6.5e-06 Score=91.81 Aligned_cols=271 Identities=12% Similarity=0.033 Sum_probs=148.4
Q ss_pred EEEEcCCCCCEEEEEeCCC-----------cEEEEEccCCCe--eEEEec-cCCCceeEEEEecCCCEEEEEeC-CCeEE
Q 007757 304 AIRFFPKYGHLILSAGMDT-----------KVKIWDVVNSGK--CMRTYM-GHSKAVRDISFCNDGTKFLTASY-DKNIK 368 (590)
Q Consensus 304 ~l~fsp~~g~~L~sgs~Dg-----------~I~iWd~~~~~~--~~~~~~-~h~~~V~~l~fspdg~~l~s~s~-Dg~I~ 368 (590)
++++.|.++++++.|+.+. .+.+||.. ..+ .+..+. .+.....++++..++++++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~-t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS-TGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT-TCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCC-CCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 4566773388899887653 57889983 332 222222 23333445788889999999985 46899
Q ss_pred EEECCCCcEEEEccC--CCCceEEEEecCCCCCcEEEEEE-cC-----CcEEEEECCCCceEEEE----cccCCceeEEE
Q 007757 369 YWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGM-SD-----KKIVQWDMNTKEITQEY----DQHLGAVNTIT 436 (590)
Q Consensus 369 vWd~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~-~d-----g~I~vwDl~t~~~~~~~----~~h~~~V~~i~ 436 (590)
+||..+++....-.. ..........++ +.+++.|+ .+ ..+.+||..+.+-...- ......-....
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~d---g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSD---GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTT---SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred EecCcCCceeECCCCCccccccceEEecC---CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccce
Confidence 999988765543222 222233344333 26788887 34 57999999887533220 00000000011
Q ss_pred EeCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeecCC--------CCcccEEEEc-CCCCEEEEEEcCC----
Q 007757 437 FVDSNRRFVTSSDD---------KSLRVWEFGIPVVIKYISEPH--------MHSMPSISLH-PNTNWLAAQSLDN---- 494 (590)
Q Consensus 437 ~~p~~~~l~s~s~D---------g~I~iwdl~~~~~~~~~~~~~--------~~~i~~i~~s-p~g~~l~s~s~dg---- 494 (590)
+..++..++.++.+ ..+..||.............. ...-.++.+. .+++++++|+.++
T Consensus 346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 22345555555444 356788887665443322111 1112333333 3677788877542
Q ss_pred -------eEEEEEccCceeeccc-ccccCcccccceEEEEEcCCCCEEEEEeCC-----------CcEEEEeCCCCeEEE
Q 007757 495 -------QILIYSTRERFQLNKK-KRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----------GKCWFWDWKSCKVFR 555 (590)
Q Consensus 495 -------~I~iwd~~~~~~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----------g~I~iwd~~t~~~~~ 555 (590)
.|.+||..+..-.... ..... .....++++.|+|++++.|+.+ ..+.+||..+.+-..
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp~---~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFASNGLYF---ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECTTCCSS---CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred CcCCcceEEEcCCCCCCCeeEEccCCCCC---CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence 5777776553211111 01111 1112245677899999998754 468999987765322
Q ss_pred --EEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 556 --TLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 556 --~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
.+........++.+.| ++.+++.||.
T Consensus 503 ~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 503 QNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred cCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 1111122223455667 6778888884
No 269
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00067 Score=77.05 Aligned_cols=274 Identities=14% Similarity=0.028 Sum_probs=159.6
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec-------cCCCceeEEEEecCCCEEEEEeCCCeEEEEEC
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 372 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-------~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~ 372 (590)
..|.+|...++ +.+.+ |+.. -|.+||. ..+....... .....|.++...++|. |..|+..+-|.++|.
T Consensus 211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNA-NTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTT-CCEEE-EETT-EEEEEET-TTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred CceeEEEEcCC-CCEEE-EeCC-cHheECC-CCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence 56889988877 65554 4545 5888987 3333322111 1245699999888776 555666567888998
Q ss_pred CCCcEEEEcc-------C------CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc---------ccCC
Q 007757 373 ETGQVIRTFS-------T------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---------QHLG 430 (590)
Q Consensus 373 ~t~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~---------~h~~ 430 (590)
.++....... . -....+.++..+.. ..|.+|+.++.|..++..+........ ....
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF--NNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK 363 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSS--CCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC--CCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence 8765433221 0 01123444444433 347788888889999987664332210 0234
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee--cCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec
Q 007757 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
.|.++...+++. |..|+.++-|.+|+..+........ ......|.++...+++.+ .+|+.++.|..|+..++....
T Consensus 364 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 364 VVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp CEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEE
T ss_pred ceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEE
Confidence 688888887775 4556656668889976543221110 123356888888877764 446776778899876543221
Q ss_pred ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-----CCCEEEEEEcCCCCCEEEEEeC-
Q 007757 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-----EGVCIGCEWHPLEQSKVATCGW- 582 (590)
Q Consensus 509 ~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h-----~~~V~~v~~sp~~~~~l~s~g~- 582 (590)
.... ......|.++...++|.+.+ |+. +-|..||..+++........ ...|.++...+ ++.+.+ |+.
T Consensus 442 -~~~~--~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~ 514 (781)
T 3v9f_A 442 -IELE--KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFG 514 (781)
T ss_dssp -CCST--TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESS
T ss_pred -eccC--CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcC
Confidence 1110 11235677888888886544 445 56999998876654433222 35688888877 454444 444
Q ss_pred CCcEEEeC
Q 007757 583 DGLIKYWD 590 (590)
Q Consensus 583 DG~I~iWD 590 (590)
.| |..||
T Consensus 515 ~G-l~~~~ 521 (781)
T 3v9f_A 515 GG-VGIYT 521 (781)
T ss_dssp SC-EEEEC
T ss_pred CC-EEEEe
Confidence 44 44443
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.00017 Score=76.01 Aligned_cols=241 Identities=12% Similarity=0.143 Sum_probs=135.2
Q ss_pred CeeEEEEcC-CCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC----C-eEEEEECCC
Q 007757 301 GVSAIRFFP-KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----K-NIKYWDTET 374 (590)
Q Consensus 301 ~V~~l~fsp-~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D----g-~I~vWd~~t 374 (590)
....|+|+| +.+ .|+.+...+.|+.+|+ ..+. +..+.........|+|+++|++|+.+... . .+.+.+..
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~-~~~~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~- 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDF-EKEY-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE- 213 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEET-TTTE-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEEC-CCCE-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-
Confidence 457889998 434 4555544488888988 3333 44444455678899999999977666652 1 34334432
Q ss_pred CcEE--EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc-cCCceeEEEEeCCCCEE-EEEeCC
Q 007757 375 GQVI--RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDSNRRF-VTSSDD 450 (590)
Q Consensus 375 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~-h~~~V~~i~~~p~~~~l-~s~s~D 450 (590)
+... ..+.....+..+.+.+. .+.++++-..++.|+.++...+........ .....+.|+|+|++++| ++-...
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~--~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPI--NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTT--TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred CceeeeeeeccCCCceEEEEeCC--CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 2211 22222334455666653 336777777789999999987754332221 22356789999999954 555567
Q ss_pred CcEEEEECCCC--cE--EEEeecC--C------------CCccc-EEEEc--------CCCCEEEEEEcCCeEEEEEccC
Q 007757 451 KSLRVWEFGIP--VV--IKYISEP--H------------MHSMP-SISLH--------PNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 451 g~I~iwdl~~~--~~--~~~~~~~--~------------~~~i~-~i~~s--------p~g~~l~s~s~dg~I~iwd~~~ 503 (590)
+.|..++.... .. +..+... . ..... .+++. +++.++++-...+.|+.++..
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~- 370 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ- 370 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-
Confidence 88999876532 11 1111110 0 01112 45553 335555555566788888743
Q ss_pred ceeeccccc----ccCcc--------cccceEEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 007757 504 RFQLNKKKR----FAGHI--------VAGYACQVNFSPD-GRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 504 ~~~~~~~~~----~~~~~--------~~~~v~~v~~spd-g~~l~sgs~dg~I~iwd~ 548 (590)
+........ ..+.. .-.....++++|+ +.++++-..+..|+.+++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 221111110 11100 0124567899985 555555555677877764
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.32 E-value=0.0015 Score=67.88 Aligned_cols=245 Identities=6% Similarity=-0.085 Sum_probs=148.9
Q ss_pred CEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEE-eCCCeEEEEECCCC----cEEEEcc-CCCC
Q 007757 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETG----QVIRTFS-TGKI 386 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~-s~Dg~I~vWd~~t~----~~~~~~~-~~~~ 386 (590)
.+|+.+. ...|+..++. .... ..+......+..|+|++.+..|+.+ ...+.|..+++... .....+. ....
T Consensus 84 ~~ll~~~-~~~I~~i~l~-~~~~-~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLD-RSEY-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp CEEEEEE-TTEEEEECTT-SCSC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred ceeEEec-cceeEEEccC-Ccce-eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 3444444 3678888873 3333 3333455678899999865555544 45688999998752 2222222 2334
Q ss_pred ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEE
Q 007757 387 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVI 464 (590)
Q Consensus 387 ~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~ 464 (590)
+..+++.+.. ++++++-...+.|.+.++........+.........|++.|.+.+|+.+.. .+.|...++......
T Consensus 161 p~glavD~~~--~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 161 PDGLAVDWIH--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp EEEEEEETTT--TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred cccEEEEecC--CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 5566666533 367777777889999999876555555445566889999997666665543 368888888654433
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcE
Q 007757 465 KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 543 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I 543 (590)
..+ .........|++++.+..|+.+. ..+.|..+++.......... ..+. -.....+++. .+.++++-...+.|
T Consensus 239 ~~~-~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~--l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 239 SLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKR--LAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp EEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-CSST--TSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred EEE-ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-CCCC--CCCCEEEEEe-CCEEEEecCCCCeE
Confidence 333 22345678899998877777665 45789999986543221111 1111 1223346662 33455555667889
Q ss_pred EEEeCCCCeEEEEEecCCCCEEEE
Q 007757 544 WFWDWKSCKVFRTLKCHEGVCIGC 567 (590)
Q Consensus 544 ~iwd~~t~~~~~~l~~h~~~V~~v 567 (590)
..+|..+++.+..+........++
T Consensus 314 ~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEEESSSCCCCEEEECSCSCEEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceE
Confidence 999988887766665433334444
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.30 E-value=0.00023 Score=75.02 Aligned_cols=239 Identities=8% Similarity=-0.042 Sum_probs=142.3
Q ss_pred ceeEEEEecC--CCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcC---C-cEEEEECCC
Q 007757 345 AVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD---K-KIVQWDMNT 418 (590)
Q Consensus 345 ~V~~l~fspd--g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~d---g-~I~vwDl~t 418 (590)
....|+|+|+ ...|+.+...+.|+.+|+.++...........+..+++.+++ +++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG---~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG---DMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC---CEEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC---CEEEEcCCCCcccceEEEEECCC
Confidence 4578999984 445666555589999999888877666555556777777654 344444321 1 233333322
Q ss_pred Cce-EEEEcccCCceeEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCCcccEEEEcCCCCEEEEEE-cCC
Q 007757 419 KEI-TQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIPVVIKYI-SEPHMHSMPSISLHPNTNWLAAQS-LDN 494 (590)
Q Consensus 419 ~~~-~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~I~iwdl~~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~s~s-~dg 494 (590)
+.. ...+. .......+++.+ ++.++++-..++.|+.++...+.....+ ..........++++|++++|+++. ..+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211 11121 234557788998 6766666667788999998766552222 222222234699999999665554 567
Q ss_pred eEEEEEccCc-eeecccccccC------cc-------cccceEEEEE---------cCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 495 QILIYSTRER-FQLNKKKRFAG------HI-------VAGYACQVNF---------SPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 495 ~I~iwd~~~~-~~~~~~~~~~~------~~-------~~~~v~~v~~---------spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
.|+.++.... ..+.....+.+ .. .-.....+++ .++|.+.++-...+.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 8999886521 11100001111 00 0123456888 777877777777889999984 66
Q ss_pred eEEEEEecC------------------CCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 552 KVFRTLKCH------------------EGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 552 ~~~~~l~~h------------------~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
... ++.+. -.....|++.|.++.++++-.....|+.+
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 443 33321 12367899995466666666666777765
No 273
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.28 E-value=0.0047 Score=62.18 Aligned_cols=273 Identities=10% Similarity=0.074 Sum_probs=146.4
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec----cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM----GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 374 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t 374 (590)
...+.+|.|.+. +..++ ++..|.|. ... ..++.-.... .....+.+|.|.+ +. ++.++..+.|.. ..+.
T Consensus 35 ~~~~~~v~~~~~-~~~~~-~G~~g~i~-~s~-DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 35 TATILDMSFIDR-HHGWL-VGVNATLM-ETR-DGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDG 107 (327)
T ss_dssp SSCEEEEEESSS-SCEEE-EETTTEEE-EES-STTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESST
T ss_pred CCcEEEEEECCC-CcEEE-EcCCCeEE-EeC-CCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCC
Confidence 346899998876 66777 45567553 222 3343222221 1245688999986 44 444555665544 3333
Q ss_pred CcEEEEccC----CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEE-EEcccCCceeEEEEeCCCCEEEEEeC
Q 007757 375 GQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 375 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~-~~~~h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
|+.-..... ......+.+... ..++ +++.++.|+. ....++.-. ....+...+..+.+.+++.+++++..
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 182 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGN---GSAE-MITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR 182 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEET---TEEE-EEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT
T ss_pred CCCceECccccCCCCCeEEEEEECC---CCEE-EEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC
Confidence 433222221 112233333322 2344 4445665533 222233222 22345567889999998877766654
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 450 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 450 Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
.+..+-+|-. +.....+..+....+..+.+.+++..+ +++.+|.+++.+...+........ ........+..+.+.+
T Consensus 183 G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~-~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 183 GSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLS-PLRRNSVGFLDLAYRT 259 (327)
T ss_dssp SSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBC-TTSSCCSCEEEEEESS
T ss_pred CcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccC-CcccCCcceEEEEecC
Confidence 3333334421 122222233455678889999888765 445678777764332332222111 0000112366788998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEec---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 530 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 530 dg~~l~sgs~dg~I~iwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
++.+++++. +|.| ++....++.-..+.. +...+.++.|.+ + ..++.++.+|.|.-++
T Consensus 260 ~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~-~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P-DQGFILGQKGILLRYV 319 (327)
T ss_dssp SSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-TEEEEECSTTEEEEEC
T ss_pred CCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-CceEEEcCCceEEEEc
Confidence 888777665 6666 455555655444442 234577888864 3 4577888899887654
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.0012 Score=67.27 Aligned_cols=231 Identities=10% Similarity=-0.010 Sum_probs=140.6
Q ss_pred eEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc
Q 007757 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 347 ~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~ 426 (590)
+|.+..++ .+|+.+ ....|+..++........+.....+..+.+.+. .+.++++-...+.|+.+++........+.
T Consensus 37 ~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSC-CEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccC-ceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEecc--ccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34444443 334433 335688888877666555555555566666653 33667776778899999998776554444
Q ss_pred ccCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc-C-CeEEEEEccC
Q 007757 427 QHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D-NQILIYSTRE 503 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~-d-g~I~iwd~~~ 503 (590)
........+++.+.+.. +++-...+.|.+.++........+ .........++++|.+..|+.... . +.|..+++..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 44456688999875544 455566788999998755433333 234456789999997666655543 3 7788888765
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 504 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
....... ... -.....++|+|++..|+.++ ..+.|..+|+........+...-....++++. ++.++++-..
T Consensus 192 ~~~~~~~---~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~ 264 (349)
T 3v64_C 192 SGRRIIA---DTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWH 264 (349)
T ss_dssp CSCEESC---CSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETT
T ss_pred CCcEEEE---ECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCC
Confidence 3222111 111 23456799998777776655 56789999986543333333334456777773 3444455444
Q ss_pred CCcEEEe
Q 007757 583 DGLIKYW 589 (590)
Q Consensus 583 DG~I~iW 589 (590)
.+.|..+
T Consensus 265 ~~~V~~~ 271 (349)
T 3v64_C 265 TKSINSA 271 (349)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 5555443
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.25 E-value=0.0014 Score=65.69 Aligned_cols=221 Identities=7% Similarity=-0.061 Sum_probs=135.6
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC----CceEEEEcccCCcee
Q 007757 358 FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVN 433 (590)
Q Consensus 358 l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t----~~~~~~~~~h~~~V~ 433 (590)
|+.+. ...|+..|+.+......+.....+..+.+.+.. +.++++-...+.|..+++.. ......+........
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~--~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTT--TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCC--CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 44443 367899999988766666555566666776543 36777777789999999886 222233333334568
Q ss_pred EEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC--CeEEEEEccCceeeccc
Q 007757 434 TITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--NQILIYSTRERFQLNKK 510 (590)
Q Consensus 434 ~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d--g~I~iwd~~~~~~~~~~ 510 (590)
.|++.+.+. .+++-...+.|.++++........+. ........++++|.+..|+.+... +.|..+++....... +
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-L 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-E
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-E
Confidence 899986554 44555677899999987554333332 234567899999977766665543 688888876432211 1
Q ss_pred ccccCcccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEec--CCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 511 KRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 511 ~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
.... -.....+++++++..|+.++ ..+.|..+|+........+.. .-....++++. ++.++++-...+.|.
T Consensus 159 --~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 159 --VTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 232 (316)
T ss_dssp --ECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred --EECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEE
Confidence 1111 23456799999877776665 567899999874332222222 22346777774 344555555556666
Q ss_pred Ee
Q 007757 588 YW 589 (590)
Q Consensus 588 iW 589 (590)
.+
T Consensus 233 ~~ 234 (316)
T 1ijq_A 233 SA 234 (316)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 276
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.23 E-value=0.00046 Score=72.67 Aligned_cols=242 Identities=9% Similarity=0.071 Sum_probs=134.9
Q ss_pred CeeEEEEcCC-CCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCC-----eEEEEECCC
Q 007757 301 GVSAIRFFPK-YGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-----NIKYWDTET 374 (590)
Q Consensus 301 ~V~~l~fsp~-~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg-----~I~vWd~~t 374 (590)
....|+|.|+ ....|+.+...+.|+.++. ..+.. ..+........+|+|+++|+ |+.+...+ .+...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~-~~g~v-~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDF-VNQYV-DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEET-TTTEE-EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEEC-CCCEE-EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 2344555544488999998 34444 44444556789999999999 44444321 233333222
Q ss_pred CcE-EEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEE-cc-cCCceeEEEEeCCCCEE-EEEeCC
Q 007757 375 GQV-IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQ-HLGAVNTITFVDSNRRF-VTSSDD 450 (590)
Q Consensus 375 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~-~~-h~~~V~~i~~~p~~~~l-~s~s~D 450 (590)
+.. ...+.....+..+++.+. .+.++++-..++.|+.+|..++.....+ .. ....-..|+|+|++++| ++-...
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~--~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQ--NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTT--TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CeeccccccccCCCCEEEEeCC--CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 111 011112233444555552 3356666667789999999877663332 21 12233469999999855 455566
Q ss_pred CcEEEEECCC--CcE--EEEeec--C------------CCCcccEEEE---------cCCCCEEEEEEcCCeEEEEEccC
Q 007757 451 KSLRVWEFGI--PVV--IKYISE--P------------HMHSMPSISL---------HPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 451 g~I~iwdl~~--~~~--~~~~~~--~------------~~~~i~~i~~---------sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
+.|+.+++.. ... ...+.. . .......+++ .+++.++++-...+.|+.++...
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G 374 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG 374 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC
Confidence 7899988652 211 111111 0 1123456888 66777666666778899988532
Q ss_pred ceeecccccc----cCc--------ccccceEEEEEc-CCCCEEEEEeCCCcEEEEeC
Q 007757 504 RFQLNKKKRF----AGH--------IVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 504 ~~~~~~~~~~----~~~--------~~~~~v~~v~~s-pdg~~l~sgs~dg~I~iwd~ 548 (590)
........- .+. ..-.....|+++ ++|.++++-..+++|+.+++
T Consensus 375 -~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 375 -RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp -EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred -CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 211111000 000 001235568888 56655555556677777764
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.21 E-value=0.00067 Score=70.24 Aligned_cols=231 Identities=10% Similarity=-0.015 Sum_probs=142.1
Q ss_pred eEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEc
Q 007757 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 426 (590)
Q Consensus 347 ~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~ 426 (590)
.|.+..+ ..+|+.+ ....|+.+++..............+..+.+.+. .+.++++-...+.|+.+++........+.
T Consensus 80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred eECCccc-cceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecC--CCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3444444 2344433 346788899887766555555555666666653 33677777778899999998776544444
Q ss_pred ccCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc-C-CeEEEEEccC
Q 007757 427 QHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D-NQILIYSTRE 503 (590)
Q Consensus 427 ~h~~~V~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~-d-g~I~iwd~~~ 503 (590)
........+++.+.+.. +++-...+.|.+.++........+ .........++++|.+.+|+.... . +.|..+++..
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 44455678899875554 455556778888888654433333 234456789999997776666554 3 6788888765
Q ss_pred ceeecccccccCcccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 504 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
....... ... ......|+|+|++..|+.++ ..+.|..+|+........+........++++. ++.++++-..
T Consensus 235 ~~~~~~~---~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~ 307 (386)
T 3v65_B 235 SGRRIIA---DTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWH 307 (386)
T ss_dssp CSCEEEE---CSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETT
T ss_pred CCcEEEE---ECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCC
Confidence 3222111 111 13356799998777766555 56789999986544333343334456778773 3445555555
Q ss_pred CCcEEEe
Q 007757 583 DGLIKYW 589 (590)
Q Consensus 583 DG~I~iW 589 (590)
.+.|..+
T Consensus 308 ~~~V~~~ 314 (386)
T 3v65_B 308 TKSINSA 314 (386)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 5666544
No 278
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.19 E-value=0.003 Score=62.53 Aligned_cols=252 Identities=11% Similarity=0.109 Sum_probs=157.6
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcE
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
..|.|-|+.+.....+.-..-. +.-.+|..+.|+.-. ...+.|+|+++.+.++.+....... -|.|-+.. .
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~Vv--fWkWis~~--~ 119 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVT--FWKWISLN--T 119 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEE--EEEECSSS--E
T ss_pred CEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccE--EEEecCCC--e
Confidence 4788889865555554433333 334578777777665 6899999999999999988766544 44444432 3
Q ss_pred EEEEEcCCcEEEEECCC-CceEEEEcccC----CceeEEEEeCCCCEEEEEeC-------CCcEEEEECCCCcEEEEeec
Q 007757 402 LLAGMSDKKIVQWDMNT-KEITQEYDQHL----GAVNTITFVDSNRRFVTSSD-------DKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 402 lvsg~~dg~I~vwDl~t-~~~~~~~~~h~----~~V~~i~~~p~~~~l~s~s~-------Dg~I~iwdl~~~~~~~~~~~ 469 (590)
|... .+..|+.|++.. ..++..+..|. ..|..-..+++.++++..+- .|.+.+|..+.... ...+
T Consensus 120 L~lV-T~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~ie 196 (365)
T 2xzh_A 120 VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIE 196 (365)
T ss_dssp EEEE-ESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--EEEC
T ss_pred EEEE-cCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc--ceee
Confidence 3333 357899999975 35667776654 46777778888898776542 36788888765532 2333
Q ss_pred CCCCcccEEEEcCC---CCEEEEEEcC---CeEEEEEccCc---eeecccc----cccCcccccceEEEEEcCCCCEEEE
Q 007757 470 PHMHSMPSISLHPN---TNWLAAQSLD---NQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 470 ~~~~~i~~i~~sp~---g~~l~s~s~d---g~I~iwd~~~~---~~~~~~~----~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
+|......+.+..+ ...|+.+... +.++|.++... ......+ .+..........++..|+.-..++.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 44433322222211 1234433332 58889888432 1111111 1222222344556888998889999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 007757 537 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 537 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 586 (590)
-+.-|.|++||+.++.++..-+-....|...+-+. ...=++.....|.|
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~-~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQV 325 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEG-GGTEEEEEETTCEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccC-CCCcEEEEcCCCEE
Confidence 99999999999999999988887777776666554 22335555566654
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.15 E-value=0.00045 Score=69.52 Aligned_cols=229 Identities=9% Similarity=-0.016 Sum_probs=138.1
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCC-CEEEEEeCCCeEEEEECCCCcEE-EEc-cCCCCceEEEEecCCC
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVI-RTF-STGKIPYVVKLNPDDD 397 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg-~~l~s~s~Dg~I~vWd~~t~~~~-~~~-~~~~~~~~~~~~~~~~ 397 (590)
...|+..++.........+......+..++|.+.+ .++++-...+.|..+++..+... ..+ ..-..+..+++.+..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~- 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG- 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-
Confidence 46788888843321222222223456789999854 44555556788999998766321 111 122344556666533
Q ss_pred CCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEEEeecCCCCcc
Q 007757 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHMHSM 475 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~~~~~~~~~~~i 475 (590)
++++++-...+.|.++++........+.........|++.|.+..|+.+.. .+.|...++........+ .......
T Consensus 91 -g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~~l~~P 168 (318)
T 3sov_A 91 -EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSEIYWP 168 (318)
T ss_dssp -TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSCE
T ss_pred -CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-ECCCCCc
Confidence 367777777889999998765443344445566789999987666665552 578888887643322222 2234456
Q ss_pred cEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 007757 476 PSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 476 ~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
..|++++++..|+.+. ..+.|..+++......... .+. ......+++.. +.++++-...+.|..++..+++..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe---cCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 7899999777666654 4578999998653222111 111 12334566643 345555556788999998777765
Q ss_pred EEEe
Q 007757 555 RTLK 558 (590)
Q Consensus 555 ~~l~ 558 (590)
..+.
T Consensus 243 ~~i~ 246 (318)
T 3sov_A 243 REIH 246 (318)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.14 E-value=0.001 Score=64.48 Aligned_cols=205 Identities=10% Similarity=0.132 Sum_probs=126.9
Q ss_pred EeccCCCceeEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEccCC--CCceEEEEecCCCCCcEEEEEEcCCcEEEE
Q 007757 338 TYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 414 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~dg~I~vw 414 (590)
.+.+-...+..++|+|++..|+ +...++.|...|+. ++.++.+... .....+++... +.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~---g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD---NQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST---TEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC---CEEEEEECCCCcEEEE
Confidence 4556667899999999766554 56778999999998 8888887654 34445555432 2455665567889999
Q ss_pred ECCCCce---EEEEc------ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC---CcEEEEee------cCCCCccc
Q 007757 415 DMNTKEI---TQEYD------QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI---PVVIKYIS------EPHMHSMP 476 (590)
Q Consensus 415 Dl~t~~~---~~~~~------~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~---~~~~~~~~------~~~~~~i~ 476 (590)
++..... +.... ........|+|.|.+..|+++.......||.+.. ...+..+. ......+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8765442 22222 1233468999999998888777666556665531 11111111 12344678
Q ss_pred EEEEcCCCCEE-EEEEcCCeEEEEEccCceeecccccccCcc----cccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007757 477 SISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 548 (590)
Q Consensus 477 ~i~~sp~g~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~ 548 (590)
+++++|....| +.......|.++|.... .........+.. .-...-.|+|.++|++.++ +.-..++.+.-
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 99999976554 44455577888887654 222222222210 0123457999999985555 66666666653
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.11 E-value=0.00014 Score=81.00 Aligned_cols=237 Identities=12% Similarity=0.117 Sum_probs=132.9
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEEccCCCeeEEEeccCCCc-eeEEEEecCCCEEEEEe-CC-----CeEEE
Q 007757 298 HTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSKA-VRDISFCNDGTKFLTAS-YD-----KNIKY 369 (590)
Q Consensus 298 H~~~V~~l~fsp~~g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~~-V~~l~fspdg~~l~s~s-~D-----g~I~v 369 (590)
+.....++++.++ +.+++.|+. +..+.+||.. .......-..+... -.++++.+++++++.|+ .+ ..+.+
T Consensus 241 ~~~~~~~~~~~~~-g~lyv~GG~~~~~v~~yd~~-t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 241 HDMFCPGISMDGN-GQIVVTGGNDAKKTSLYDSS-SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp CCCSSCEEEECTT-SCEEEECSSSTTCEEEEEGG-GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred CCCccccccCCCC-CCEEEeCCCCCCceEEecCc-CCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceE
Confidence 3344455677787 889999984 4589999983 33322211112222 23456667899999988 44 57999
Q ss_pred EECCCCcEEEEccCCCCceEEE--EecCCCCCcEEEEEEcCC---------cEEEEECCCCceEEEEcccCC--------
Q 007757 370 WDTETGQVIRTFSTGKIPYVVK--LNPDDDKQNILLAGMSDK---------KIVQWDMNTKEITQEYDQHLG-------- 430 (590)
Q Consensus 370 Wd~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~lvsg~~dg---------~I~vwDl~t~~~~~~~~~h~~-------- 430 (590)
||..++.....-.....+.... ......+..+++.|+.+| .+..||..+.........+..
T Consensus 319 yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 319 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398 (656)
T ss_dssp EETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred eCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCC
Confidence 9998877544311000000000 000001224555565443 567888887764433322211
Q ss_pred -ceeEEEEeC-CCCEEEEEeCCC-----------cEEEEECCCCcEEEEe--ecCCCCcccEEEEcCCCCEEEEEEcC--
Q 007757 431 -AVNTITFVD-SNRRFVTSSDDK-----------SLRVWEFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQSLD-- 493 (590)
Q Consensus 431 -~V~~i~~~p-~~~~l~s~s~Dg-----------~I~iwdl~~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~s~s~d-- 493 (590)
.-.++.|.. +++.+++|+.++ .|.+||..+....... ..+......++++.|+++++++|+.+
T Consensus 399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 223444433 677778877432 5778887766544432 22233334566778899999998864
Q ss_pred ---------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC
Q 007757 494 ---------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 494 ---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
..+.+||..+..- ......... ..+.....+.|+|++++.|+.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W-~~~~~~~~~--R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTF-YKQNPNSIV--RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEE-EECCCCSSC--CCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCce-eecCCCCCc--cccccHhhcCCCcEEEecCCC
Confidence 5689999876431 111111111 122233556799999999985
No 282
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=0.00064 Score=72.20 Aligned_cols=248 Identities=7% Similarity=0.054 Sum_probs=139.8
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCcEEEEEccCCCeeEEEecc---CCCceeEEEE-------ecCCCEEEEEeCCC-----
Q 007757 302 VSAIRFFP-KYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRDISF-------CNDGTKFLTASYDK----- 365 (590)
Q Consensus 302 V~~l~fsp-~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~---h~~~V~~l~f-------spdg~~l~s~s~Dg----- 365 (590)
...|+|.| +.++++++....+.|++.|+ ..+.....+.. .......|+| +++|.+|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~-~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDL-KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEET-TTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEEC-CCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 56789998 44556666555567888887 34444333322 1235889999 99999777776654
Q ss_pred --eEEEEECCC-CcEE-----EEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC-------CCce---------
Q 007757 366 --NIKYWDTET-GQVI-----RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-------TKEI--------- 421 (590)
Q Consensus 366 --~I~vWd~~t-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~-------t~~~--------- 421 (590)
.|.+.+... +... ..+.....+..+++.+. .+.++++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~--~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPI--NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTT--TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCC--CCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2211 12222223344555553 44778888888999999997 5543
Q ss_pred --EEE-Ec-ccCCceeEEEEeCCCCE-EEEEeCCCcEEEEECCC--CcE--EEEeec--C------------CCCccc-E
Q 007757 422 --TQE-YD-QHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGI--PVV--IKYISE--P------------HMHSMP-S 477 (590)
Q Consensus 422 --~~~-~~-~h~~~V~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~--~~~--~~~~~~--~------------~~~~i~-~ 477 (590)
... +. ........|+|+|++++ +++-+....|+.+++.. ... ...+.. . ...... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 112 21 22344678999999995 45555677888866532 211 011111 0 001123 4
Q ss_pred EEEc-------CCCCEEEEEEcCCeEEEEEccCceeecccccc-----------cCcc--------cccceEEEEEcCC-
Q 007757 478 ISLH-------PNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-----------AGHI--------VAGYACQVNFSPD- 530 (590)
Q Consensus 478 i~~s-------p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-----------~~~~--------~~~~v~~v~~spd- 530 (590)
++.. +.+.++++-..++.|+.++.. +. +..+... .+.. .-.....|+++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeCC-CC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 5554 456666666677889999843 32 1111100 0100 0123457888886
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEE
Q 007757 531 GRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 531 g~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
|.++++=..+.+|+.+++....++
T Consensus 456 g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TEEEEEETTTTEEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEECCCCccc
Confidence 665555556778888887665444
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.06 E-value=0.00051 Score=77.72 Aligned_cols=197 Identities=12% Similarity=0.136 Sum_probs=107.4
Q ss_pred CCCC-CeeEEEEc-CCCCCEEE-EEeCCC----cEEEEEccCCC-eeEE-EeccCCCceeEEEEecCCCEEEEEeCC---
Q 007757 297 GHTK-GVSAIRFF-PKYGHLIL-SAGMDT----KVKIWDVVNSG-KCMR-TYMGHSKAVRDISFCNDGTKFLTASYD--- 364 (590)
Q Consensus 297 gH~~-~V~~l~fs-p~~g~~L~-sgs~Dg----~I~iWd~~~~~-~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~D--- 364 (590)
+|.- .+...+|+ |+ |++|+ +.+.+| .|+++|+ .++ +.+. .+. .....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl-~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRI-SDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEET-TCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEEC-CCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 4543 68889999 99 77666 444333 4999999 455 4221 111 124578999999988877765
Q ss_pred --CeEEEEECCCCcE--EEEccCCC--CceEEEEecCCCCCcEEEEEEc--CCcEEEEECCCCc--e--EEEEcccCCce
Q 007757 365 --KNIKYWDTETGQV--IRTFSTGK--IPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKE--I--TQEYDQHLGAV 432 (590)
Q Consensus 365 --g~I~vWd~~t~~~--~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~--dg~I~vwDl~t~~--~--~~~~~~h~~~V 432 (590)
..|.++++.++.. ...+.... ......+++++ ..++++... ...|+++|+.++. . ...........
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 3688889987642 23332222 22334455543 344444432 3468889998752 2 22223344555
Q ss_pred eEEEEeCCCCEEEEEeCC----CcEEEEECCCCcE-EE-EeecCCCCcccEEEEcCCCCEEEEEEcCCe--EEEEEc
Q 007757 433 NTITFVDSNRRFVTSSDD----KSLRVWEFGIPVV-IK-YISEPHMHSMPSISLHPNTNWLAAQSLDNQ--ILIYST 501 (590)
Q Consensus 433 ~~i~~~p~~~~l~s~s~D----g~I~iwdl~~~~~-~~-~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~--I~iwd~ 501 (590)
.++.|+..+.+++.+..+ ..|..+++..+.. .. .+.......+..+.+. .+.++++...++. |.++++
T Consensus 323 ~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 666655444444444433 2577777764321 11 2222122244555554 2334555566775 455554
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.05 E-value=0.0064 Score=58.75 Aligned_cols=203 Identities=12% Similarity=0.123 Sum_probs=127.9
Q ss_pred EEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec-cCCCceeEEEEecCCCEEEEEeCCCeEEEEE
Q 007757 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371 (590)
Q Consensus 293 ~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd 371 (590)
+.+.|-.+.+..|+|.|+++.++++...++.|...|. .++.++.+. +-....-.|++.+++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~--~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTT--NGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEET--TCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeC--CCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3556777789999999985556666788888888888 377777763 2235677889998887767766778899998
Q ss_pred CCCCcE---EEEccC-------CCCceEEEEecCCCCCcEEEEEEcCC-cEEEEEC-CCCceEEEEc-------ccCCce
Q 007757 372 TETGQV---IRTFST-------GKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDM-NTKEITQEYD-------QHLGAV 432 (590)
Q Consensus 372 ~~t~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~lvsg~~dg-~I~vwDl-~t~~~~~~~~-------~h~~~V 432 (590)
+..... +..... ......+++.+.. ..++++.-.+. .|+.|+- .....+..+. .+...+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD--HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCC--CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 765442 233321 1122567777654 24555444444 5555551 1111122221 133467
Q ss_pred eEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEEEEeecCCC--------CcccEEEEcCCCCEEEEEEcCCeEEEEEc
Q 007757 433 NTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHM--------HSMPSISLHPNTNWLAAQSLDNQILIYST 501 (590)
Q Consensus 433 ~~i~~~p~~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~--------~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 501 (590)
.+++++|.... ++.....+.|.++|.... .+..+..... .....|++.++|++.+ .+.-+.++.|.-
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence 89999997655 455556677888997644 4544443221 2457899999998444 477777777643
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.05 E-value=0.0055 Score=69.23 Aligned_cols=229 Identities=7% Similarity=-0.073 Sum_probs=140.5
Q ss_pred CCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCC-EEEEEeCCCeEEEEECCCC----cEEEEcc-CCCCceEEEEe
Q 007757 320 MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETG----QVIRTFS-TGKIPYVVKLN 393 (590)
Q Consensus 320 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~-~l~s~s~Dg~I~vWd~~t~----~~~~~~~-~~~~~~~~~~~ 393 (590)
....|+..++ ....... +......+..|+|.+... ++++-...+.|+.+++... .....+. ....+..+++.
T Consensus 402 n~~~Ir~i~l-~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 402 NRHEVRKMTL-DRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CBSSEEEECT-TSCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccceeEeec-cCCccee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 3456788777 3333333 333456778999998544 4455555688999998753 2222232 23445667777
Q ss_pred cCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC-C-CcEEEEECCCCcEEEEeecCC
Q 007757 394 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-D-KSLRVWEFGIPVVIKYISEPH 471 (590)
Q Consensus 394 ~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-D-g~I~iwdl~~~~~~~~~~~~~ 471 (590)
+.. ++++++-...+.|.+.++........+.........|++.|.+.+|+.+.. . +.|.+.++........+ ...
T Consensus 480 ~~~--~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv-~~~ 556 (791)
T 3m0c_C 480 WIH--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-TEN 556 (791)
T ss_dssp TTT--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-CSS
T ss_pred ecC--CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-eCC
Confidence 654 367777778899999999866544444445567899999998666665543 2 67888888655443333 334
Q ss_pred CCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEE-eCCCcEEEEeCC
Q 007757 472 MHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-DGEGKCWFWDWK 549 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sg-s~dg~I~iwd~~ 549 (590)
......|++++.+..|+.+. ..+.|..+++........... .+. -.....|++. +.+|+.. ...+.|...|..
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-~~~--l~~P~glav~--~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-EKR--LAHPFSLAVF--EDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-TTT--TSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-CCc--cCCCCEEEEe--CCEEEEEECCCCEEEEEeCC
Confidence 45678999998777776665 446799999865433221111 011 1122345553 3345444 466788888887
Q ss_pred CCeEEEEEe
Q 007757 550 SCKVFRTLK 558 (590)
Q Consensus 550 t~~~~~~l~ 558 (590)
+++.+..+.
T Consensus 632 tG~~~~~l~ 640 (791)
T 3m0c_C 632 TGSDVNLLA 640 (791)
T ss_dssp TCCCCEEEE
T ss_pred CCcceEEee
Confidence 877666654
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.05 E-value=0.0027 Score=65.92 Aligned_cols=222 Identities=7% Similarity=-0.071 Sum_probs=138.7
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC----ceEEEEcccCCce
Q 007757 357 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAV 432 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~----~~~~~~~~h~~~V 432 (590)
+|+.+ ....|+..++........+.....+..+.+.+.. +.++++-...+.|+.+++... .....+.......
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~--~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS--NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTT--TEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeecc--CceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 44444 3478999999877666655555566666676643 366677667889999998752 2333444345667
Q ss_pred eEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc--CCeEEEEEccCceeecc
Q 007757 433 NTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNK 509 (590)
Q Consensus 433 ~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~--dg~I~iwd~~~~~~~~~ 509 (590)
..|++.+. ++++++-...+.|.+.++........+. ........|+++|.+.+|+.... .+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence 88999874 4455555667889999987665444443 34455789999997777666653 36788888865432211
Q ss_pred cccccCcccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEec--CCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 007757 510 KKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 510 ~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~s~g~DG~I 586 (590)
. ... -.....|++++++..|+.++ ..+.|..+|+........+.. .-....++++. ++.++++-...+.|
T Consensus 241 ~---~~~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V 313 (400)
T 3p5b_L 241 V---TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI 313 (400)
T ss_dssp E---CSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSE
T ss_pred E---ECC--CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeE
Confidence 1 111 13456799998887777665 467899999865444333332 22345677763 34455555555666
Q ss_pred EEe
Q 007757 587 KYW 589 (590)
Q Consensus 587 ~iW 589 (590)
..+
T Consensus 314 ~~~ 316 (400)
T 3p5b_L 314 FSA 316 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 287
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.96 E-value=0.024 Score=58.28 Aligned_cols=253 Identities=11% Similarity=0.122 Sum_probs=161.8
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCc
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 400 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
...|.|-|+.+.....+.-..- -+.-.+|..+.|+.-. ..++.|+|+++...++.+.....+....|....
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~---- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT----
T ss_pred CCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC----
Confidence 3478888886545554433322 2344677777666655 689999999999999998887776666665533
Q ss_pred EEEEEEcCCcEEEEECCC-CceEEEEcccC----CceeEEEEeCCCCEEEEEe-------CCCcEEEEECCCCcEEEEee
Q 007757 401 ILLAGMSDKKIVQWDMNT-KEITQEYDQHL----GAVNTITFVDSNRRFVTSS-------DDKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t-~~~~~~~~~h~----~~V~~i~~~p~~~~l~s~s-------~Dg~I~iwdl~~~~~~~~~~ 468 (590)
.|.. -.+..|+.|++.. ..++..+..|. ..|..-..+++.++++..+ -.|.+.+|..+.... ...
T Consensus 118 ~l~l-VT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q~i 194 (494)
T 1bpo_A 118 TVAL-VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPI 194 (494)
T ss_dssp EEEE-ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE--EEE
T ss_pred eEEE-EcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc--chh
Confidence 2333 3467899999974 35667776654 4677778888999887554 246788898765542 223
Q ss_pred cCCCCcccEEEEcCC---CCEEEEEEcC---CeEEEEEccCc---eeeccc----ccccCcccccceEEEEEcCCCCEEE
Q 007757 469 EPHMHSMPSISLHPN---TNWLAAQSLD---NQILIYSTRER---FQLNKK----KRFAGHIVAGYACQVNFSPDGRFVM 535 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~---g~~l~s~s~d---g~I~iwd~~~~---~~~~~~----~~~~~~~~~~~v~~v~~spdg~~l~ 535 (590)
++|......+.+..+ ...|+.+... +.++|.++... ...... ..+..........++..|+.-..++
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 345444333333221 1234444433 78999988542 111000 0122222234455688999988999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 007757 536 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 536 sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 586 (590)
.-+.-|.|++||+.++.++..-+-....|...+-+.. ..=++.....|.|
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~-~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA-TAGIIGVNRKGQV 324 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT-TTEEEEEETTCEE
T ss_pred EEecCceEEEEecccceeeeeecccCCceEEecccCC-CCcEEEEccCceE
Confidence 9999999999999999999888877777776666653 3345555566654
No 288
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.87 E-value=0.012 Score=69.39 Aligned_cols=216 Identities=13% Similarity=0.148 Sum_probs=128.4
Q ss_pred eEEEEECCCCcEEEEccCCCCc--eEEEEe-cCCCCCcEEEEEE----------cCCcEEEEECCCCceEEEE-cccCCc
Q 007757 366 NIKYWDTETGQVIRTFSTGKIP--YVVKLN-PDDDKQNILLAGM----------SDKKIVQWDMNTKEITQEY-DQHLGA 431 (590)
Q Consensus 366 ~I~vWd~~t~~~~~~~~~~~~~--~~~~~~-~~~~~~~~lvsg~----------~dg~I~vwDl~t~~~~~~~-~~h~~~ 431 (590)
.|++.|..+.+.+..+.....- .+++.. .......++++|+ ..|.|++|++..+++.... ....++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 5788888888887766554433 333332 2233457888887 3588999998755433222 234688
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
|++++-. +| +|+++- ...|++|++...+.++.-. ..-..+..+.+...++++++|..-..|.++..+.. ...+.
T Consensus 888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~-~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~--~~~L~ 961 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTEC-NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM--EGNFE 961 (1158)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEE-EECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT--TTEEE
T ss_pred CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEe-eccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC--CCeEE
Confidence 9998866 34 555544 4789999998765444111 11112444444446789999988777777654321 11122
Q ss_pred cccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------CeEEEEEecCC-CCEEEEE---EcCCC------
Q 007757 512 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--------CKVFRTLKCHE-GVCIGCE---WHPLE------ 573 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t--------~~~~~~l~~h~-~~V~~v~---~sp~~------ 573 (590)
.+.......+++++.|-.++ .++.++.+|.|.+..... .++...-.-|- ..|+++. +.+..
T Consensus 962 ~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~ 1040 (1158)
T 3ei3_A 962 EIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETST 1040 (1158)
T ss_dssp EEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------
T ss_pred EEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccc
Confidence 23333335667777776444 777899999999987643 23333333343 3566664 33311
Q ss_pred --CCEEEEEeCCCcEEE
Q 007757 574 --QSKVATCGWDGLIKY 588 (590)
Q Consensus 574 --~~~l~s~g~DG~I~i 588 (590)
...++-++.+|.|-+
T Consensus 1041 ~~~~~il~~T~~GsIg~ 1057 (1158)
T 3ei3_A 1041 PTQGSVLFGTVNGMIGL 1057 (1158)
T ss_dssp CEEEEEEEEETTSCEEE
T ss_pred cccceEEEEecCCEEEE
Confidence 235788888999865
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.85 E-value=0.0067 Score=60.55 Aligned_cols=207 Identities=10% Similarity=0.072 Sum_probs=125.2
Q ss_pred ecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEE-ecc----C--CCceeEEEE---ecCCCEEEEEeC-
Q 007757 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMG----H--SKAVRDISF---CNDGTKFLTASY- 363 (590)
Q Consensus 295 l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~----h--~~~V~~l~f---spdg~~l~s~s~- 363 (590)
+.+...---+++|++..+.++++.-..++|..|+.. .+..... +.+ . ...+..|.| .|+++++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 334444456789998745555555579999999983 3332222 222 1 114679999 688777775432
Q ss_pred ------------CCeEEEEECC---CCcEEEEccCC------------CCceEEEEecCCCCCcEEEEEEcC-CcEEEEE
Q 007757 364 ------------DKNIKYWDTE---TGQVIRTFSTG------------KIPYVVKLNPDDDKQNILLAGMSD-KKIVQWD 415 (590)
Q Consensus 364 ------------Dg~I~vWd~~---t~~~~~~~~~~------------~~~~~~~~~~~~~~~~~lvsg~~d-g~I~vwD 415 (590)
+..|..+|+. +++.+...... ....+..+..+. .++..++++.. +.|..++
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEEC
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEe
Confidence 6789999999 88776655421 222344444443 35788888888 8888888
Q ss_pred CCCCceEEEE-c----ccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEeecC---CCCcccEE-EEcCCC
Q 007757 416 MNTKEITQEY-D----QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVV--IKYISEP---HMHSMPSI-SLHPNT 484 (590)
Q Consensus 416 l~t~~~~~~~-~----~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~--~~~~~~~---~~~~i~~i-~~sp~g 484 (590)
........-+ . ......+.|.++|+++.|++....|.|..+|+..+.. +.....+ .......| ..-.+|
T Consensus 166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 166 ADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp TTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence 7654332222 1 1122467999999999999887799999999986544 2211001 11122333 333467
Q ss_pred CEEE-EEEcCCeEEEEEccC
Q 007757 485 NWLA-AQSLDNQILIYSTRE 503 (590)
Q Consensus 485 ~~l~-s~s~dg~I~iwd~~~ 503 (590)
+.|+ +....+.+.+.+...
T Consensus 246 ~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEEETTEEEEEECSST
T ss_pred EEEEEEcCCCCEEEEECCCC
Confidence 7744 444556555555433
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.84 E-value=0.019 Score=57.85 Aligned_cols=185 Identities=12% Similarity=0.272 Sum_probs=121.9
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecC----CC---EEEEEe-C--CCeEEEEEC--CCCcEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCND----GT---KFLTAS-Y--DKNIKYWDT--ETGQVIR 379 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspd----g~---~l~s~s-~--Dg~I~vWd~--~t~~~~~ 379 (590)
..+++.....+-+.+||+ .++.+..+.. +.++.+..-|+ |+ ++++.. . +++|++|++ .++. +.
T Consensus 40 ~s~ii~t~k~~gL~Vydl--~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL--DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET--TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred ccEEEEEcCCCCEEEEcC--CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 456777777788999999 7888887754 56777776662 22 223333 3 578999977 3443 44
Q ss_pred Ecc-------CC-CCceEEEEecCCC-CCcEEEEEEcCCcEEEEECC-------CCceEEEEcccCCceeEEEEeCCCCE
Q 007757 380 TFS-------TG-KIPYVVKLNPDDD-KQNILLAGMSDKKIVQWDMN-------TKEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 380 ~~~-------~~-~~~~~~~~~~~~~-~~~~lvsg~~dg~I~vwDl~-------t~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
.+. .. ..++-+|+..+.. +..++++...+|.+..|++. +.++++++.. .+.+-.+...+...+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 442 11 4455566633332 23468888888999999883 3356677653 457888889888889
Q ss_pred EEEEeCCCcEEEEECC-----CCcEEEEeecCCC-CcccEEEEc--CCCC-EEEEEE-cCCeEEEEEcc
Q 007757 444 FVTSSDDKSLRVWEFG-----IPVVIKYISEPHM-HSMPSISLH--PNTN-WLAAQS-LDNQILIYSTR 502 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~-----~~~~~~~~~~~~~-~~i~~i~~s--p~g~-~l~s~s-~dg~I~iwd~~ 502 (590)
|+.+-.+.-|..++.+ +...+..+...+. ..+..|++. ++++ ||++++ .++.+.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998776666654 2345544432222 357888884 5555 676666 56799999986
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=0.005 Score=65.31 Aligned_cols=239 Identities=10% Similarity=0.001 Sum_probs=136.3
Q ss_pred eeEEEEec-CCCEEEEEe-CCCeEEEEECCCCcEEEEccCCC----CceEEEE-------ecCCCCCcEEEEEEcCC---
Q 007757 346 VRDISFCN-DGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGK----IPYVVKL-------NPDDDKQNILLAGMSDK--- 409 (590)
Q Consensus 346 V~~l~fsp-dg~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~lvsg~~dg--- 409 (590)
...|+|.| +...|+.+. ..+.|++.|+.++.+......+. .+..+++ .+.+. .++++...++
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCCCCCcc
Confidence 56899998 344455444 44779999999887776554432 3456666 55432 3555544432
Q ss_pred ---cEEEEECCC-CceE-----EEEcccCCceeEEEEeCC-CCEEEEEeCCCcEEEEECC-------CCcE---------
Q 007757 410 ---KIVQWDMNT-KEIT-----QEYDQHLGAVNTITFVDS-NRRFVTSSDDKSLRVWEFG-------IPVV--------- 463 (590)
Q Consensus 410 ---~I~vwDl~t-~~~~-----~~~~~h~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~-------~~~~--------- 463 (590)
.|.+++... +... ..+.. ......++++|+ +.++++-..++.|+.+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 367776443 2221 22221 224467888994 5556666778889999987 3432
Q ss_pred --EEE-eecCCCCcccEEEEcCCCCEEEEE-EcCCeEEEEEccCce-eecccccc------cCcc-------cccceE-E
Q 007757 464 --IKY-ISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERF-QLNKKKRF------AGHI-------VAGYAC-Q 524 (590)
Q Consensus 464 --~~~-~~~~~~~~i~~i~~sp~g~~l~s~-s~dg~I~iwd~~~~~-~~~~~~~~------~~~~-------~~~~v~-~ 524 (590)
... +..+.......|+|+|++++|+++ +..+.|+.++..... .+.....+ .+.. .-.... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 112 222334456789999999965555 456788887654321 11000011 1110 001122 3
Q ss_pred EEEc-------CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC------------------------CCCEEEEEEcCCC
Q 007757 525 VNFS-------PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH------------------------EGVCIGCEWHPLE 573 (590)
Q Consensus 525 v~~s-------pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h------------------------~~~V~~v~~sp~~ 573 (590)
++.. ++|.++++-..+.+|+.++ .++. +.++-+. -.....|++.+++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 4444 5666666666788999998 5664 4444332 0236789999843
Q ss_pred CCEEEEEeCCCcEEEe
Q 007757 574 QSKVATCGWDGLIKYW 589 (590)
Q Consensus 574 ~~~l~s~g~DG~I~iW 589 (590)
+.++++=.....|+.+
T Consensus 456 g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEE
Confidence 6566665566777765
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.84 E-value=0.041 Score=64.77 Aligned_cols=231 Identities=11% Similarity=0.130 Sum_probs=123.4
Q ss_pred eeEEecCC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEE-eccCCCceeEEEEecC------CCEEEEEe
Q 007757 291 LVHTWSGH-TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT-YMGHSKAVRDISFCND------GTKFLTAS 362 (590)
Q Consensus 291 ~v~~l~gH-~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fspd------g~~l~s~s 362 (590)
.+..|..- ...|.+.+.+. .+++.++ .+.+.++.+. .+.+... -..-...|.|+++.+. +.+++.|.
T Consensus 504 ~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~-~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~ 578 (1158)
T 3ei3_A 504 LVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIH-PQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGL 578 (1158)
T ss_dssp EEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEE-TTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEE
T ss_pred EEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEee-CCceeeecccCCCCceEEEEeecCCCCcccccEEEEEE
Confidence 45555533 33566666542 3555555 5778888874 3322211 1123567999999863 46899999
Q ss_pred C-CCeEEEEECCCCcEEEEccCCC--CceEEEEecCCCCCcEEEEEEcCCcEEEEEC--CCCceEEE---EcccCCceeE
Q 007757 363 Y-DKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQE---YDQHLGAVNT 434 (590)
Q Consensus 363 ~-Dg~I~vWd~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl--~t~~~~~~---~~~h~~~V~~ 434 (590)
. |++|+|+++.+.+.+.....+. .+..+.+.... ...+|.+|..||.+..+.+ .++.+... +-+ ..++.-
T Consensus 579 ~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~-~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L 656 (1158)
T 3ei3_A 579 WTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFE-SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVL 656 (1158)
T ss_dssp TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEET-TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEE
T ss_pred CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeC-CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEE
Confidence 7 9999999999887776554432 44444444332 3367899999999866554 45554432 222 234544
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccE-EEEcCC--CCEEEEEEcCCeEEEEEccCceeecccc
Q 007757 435 ITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS-ISLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKK 511 (590)
Q Consensus 435 i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~-i~~sp~--g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 511 (590)
..+...+..-+.+..+....+|.-+..-....+ ....+.. ..|+.. ..-++..+ ++.++|..+.....+....
T Consensus 657 ~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ 732 (1158)
T 3ei3_A 657 RTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRT 732 (1158)
T ss_dssp EEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEE
T ss_pred EEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEE
Confidence 444444444333444555555554332222211 2223333 334322 23344333 5568888775432221111
Q ss_pred cccCcccccceEEEEEcCCCCEEEE
Q 007757 512 RFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 512 ~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
+ .....+..++++|..+.++.
T Consensus 733 -i---pL~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 733 -V---PLYESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp -E---ECSSEEEEEEEEGGGTEEEE
T ss_pred -E---eCCCCceEEEEcCCCCEEEE
Confidence 1 11234556777776665443
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.83 E-value=0.0027 Score=63.76 Aligned_cols=216 Identities=9% Similarity=-0.023 Sum_probs=128.0
Q ss_pred CCeEEEEECCCCc--EEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCce-EEEEcccCCceeEEEEeCC
Q 007757 364 DKNIKYWDTETGQ--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 364 Dg~I~vWd~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~-~~~~~~h~~~V~~i~~~p~ 440 (590)
...|+.+++.... ....+.....+..+.|.+ ..+.++++-...+.|..+++..+.. ...+.........+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 4688999988763 222222222233444544 3346777777788999999886632 2222233345678999875
Q ss_pred CC-EEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc--CCeEEEEEccCceeecccccccCcc
Q 007757 441 NR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNKKKRFAGHI 517 (590)
Q Consensus 441 ~~-~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~ 517 (590)
+. .+++-...+.|.++++........+ .........++++|.+.+|+.... .+.|..+++......... ...
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---~~~- 164 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII---NSE- 164 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE---CSS-
T ss_pred CCeEEEEECCCCEEEEEECCCCcEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE---ECC-
Confidence 44 5555566788999998754333222 234456789999997777666653 578888887643221111 111
Q ss_pred cccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 518 VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 518 ~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
-.....++|++++..|+.++ ..+.|..+|+........+........++++.. +.++++-...+.|..+
T Consensus 165 -l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 165 -IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILAC 234 (318)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEE
T ss_pred -CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEE
Confidence 13346799999777776665 567899999864333222332334566777743 3445554445555544
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.0025 Score=64.13 Aligned_cols=195 Identities=9% Similarity=0.182 Sum_probs=122.9
Q ss_pred EEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC----C---E-EEEEeC--CCcEEEEECC
Q 007757 390 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN----R---R-FVTSSD--DKSLRVWEFG 459 (590)
Q Consensus 390 ~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~----~---~-l~s~s~--Dg~I~iwdl~ 459 (590)
+-.++......+++.....+.|.+||+ +|+.++.+.. +.++.+..-|.- + + +++.-. +++|.+|++.
T Consensus 31 vw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 31 IWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp EECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred EecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 334454445567787888899999999 8888888853 667887777632 2 2 233333 5789999873
Q ss_pred -CCcEEEEeec---C--C-CCcccEEEE--cCC-CC-EEEEEEcCCeEEEEEccCc----eeecccccccCcccccceEE
Q 007757 460 -IPVVIKYISE---P--H-MHSMPSISL--HPN-TN-WLAAQSLDNQILIYSTRER----FQLNKKKRFAGHIVAGYACQ 524 (590)
Q Consensus 460 -~~~~~~~~~~---~--~-~~~i~~i~~--sp~-g~-~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~~~~~~~~v~~ 524 (590)
....+..+.. + . ...+..+|+ +|. +. ++++...+|.+..|++... ........+.- .+.+-.
T Consensus 108 p~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~Eg 184 (355)
T 3amr_A 108 GKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEG 184 (355)
T ss_dssp TTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEE
T ss_pred CCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcce
Confidence 2223444422 1 1 155677888 664 43 6888888999999988431 11111222222 244566
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCC-----CCeEEEEEe-cC-CCCEEEEEEc--CCCC-CEEEEEeCCCcEEEeC
Q 007757 525 VNFSPDGRFVMSGDGEGKCWFWDWK-----SCKVFRTLK-CH-EGVCIGCEWH--PLEQ-SKVATCGWDGLIKYWD 590 (590)
Q Consensus 525 v~~spdg~~l~sgs~dg~I~iwd~~-----t~~~~~~l~-~h-~~~V~~v~~s--p~~~-~~l~s~g~DG~I~iWD 590 (590)
+...+....|+.+-.+.-|+.++.. +++.+..+. .+ ...+..|++- +++. .+|+++-.+.++.+||
T Consensus 185 cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 185 MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 8888888999999998778888855 355665553 22 2367888874 3222 3455554667788775
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.79 E-value=0.011 Score=58.89 Aligned_cols=210 Identities=10% Similarity=0.114 Sum_probs=126.0
Q ss_pred cCCCceeEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEE-ccC----CC-CceEEEEec---CCCCCcEEEEEEc---
Q 007757 341 GHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRT-FST----GK-IPYVVKLNP---DDDKQNILLAGMS--- 407 (590)
Q Consensus 341 ~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~~~~-~~~----~~-~~~~~~~~~---~~~~~~~lvsg~~--- 407 (590)
....---++.|.+....|+.++ ..+.|..||...+..... +.. +. ......+.. +.. +.++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence 3344456789988555555555 799999999986654443 221 11 112334444 233 456665442
Q ss_pred ----------CCcEEEEECC---CCceEEEEcc--c-----------CCceeEEEEeCCCCEEEEEeCC-CcEEEEECCC
Q 007757 408 ----------DKKIVQWDMN---TKEITQEYDQ--H-----------LGAVNTITFVDSNRRFVTSSDD-KSLRVWEFGI 460 (590)
Q Consensus 408 ----------dg~I~vwDl~---t~~~~~~~~~--h-----------~~~V~~i~~~p~~~~l~s~s~D-g~I~iwdl~~ 460 (590)
+..|..||+. +++.+....- . ....+.++..++|+..++++.. +.|...+...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 6789999999 8877766541 1 1247899999999999999888 8877777654
Q ss_pred CcEEEEe-ec---CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccccc-Ccc-cccceEE-EEEcCCCCE
Q 007757 461 PVVIKYI-SE---PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA-GHI-VAGYACQ-VNFSPDGRF 533 (590)
Q Consensus 461 ~~~~~~~-~~---~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~~~-~~~~v~~-v~~spdg~~ 533 (590)
....... .. ......+.|+++|++..|++....|.|..+|+...... .+.... +.. .-..... +..-.+|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEE
Confidence 4222111 11 12234679999999999998877999999998743220 011100 110 0011122 233347777
Q ss_pred -EEEEeCCCcEEEEeCCCCe
Q 007757 534 -VMSGDGEGKCWFWDWKSCK 552 (590)
Q Consensus 534 -l~sgs~dg~I~iwd~~t~~ 552 (590)
|++....+.+.+.+...++
T Consensus 248 llV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEEEEETTEEEEEECSSTTS
T ss_pred EEEEcCCCCEEEEECCCCcc
Confidence 4455556666776654433
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.78 E-value=0.029 Score=61.70 Aligned_cols=232 Identities=7% Similarity=-0.057 Sum_probs=143.8
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEEEec-cCCCceeEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEccCC-CCceEE
Q 007757 314 LILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTG-KIPYVV 390 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~-s~s~Dg~I~vWd~~t~~~~~~~~~~-~~~~~~ 390 (590)
+|+.+ ....|+..++. .......+. ..-..+..|+|++.+..|+ +-..++.|..+++........+..+ ..+..+
T Consensus 8 ~Ll~s-~~~~I~~i~l~-~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLE-TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESS-CTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECC-CCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 34333 45678888884 332222221 2335688999999655555 5456789999998766544444433 346667
Q ss_pred EEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEEEee
Q 007757 391 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYIS 468 (590)
Q Consensus 391 ~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~~~~~ 468 (590)
++.+.. ++++++-...+.|.+.++........+.........|++.|....|+.+.. .+.|...++.........
T Consensus 86 AvD~~~--~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~- 162 (628)
T 4a0p_A 86 AVDWLG--KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV- 162 (628)
T ss_dssp EEETTT--TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred EEEeCC--CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence 776643 367777777889999999765433334345566789999986656655542 567887887654433323
Q ss_pred cCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007757 469 EPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 469 ~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd 547 (590)
. .......|++++.+..|+.+. ..+.|..+++...... .. ... ......+++.. +.+.++-...+.|...|
T Consensus 163 ~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~---~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 163 P-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VI---ADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE---EEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred C-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE-Ee---ecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 2 445678999999877666665 4578999998764331 11 111 11233566654 34444444578899999
Q ss_pred CCCCeEEEEEe
Q 007757 548 WKSCKVFRTLK 558 (590)
Q Consensus 548 ~~t~~~~~~l~ 558 (590)
..+++....+.
T Consensus 235 k~tg~~~~~l~ 245 (628)
T 4a0p_A 235 KTSGQNRTIIQ 245 (628)
T ss_dssp TTTCCSCEEEE
T ss_pred CCCCCceEEEe
Confidence 77776554444
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.78 E-value=0.039 Score=60.62 Aligned_cols=280 Identities=9% Similarity=-0.008 Sum_probs=150.6
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec-cCCCceeEEEEecCCCEEEEEeC--CCeEEEEECCCCc
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQ 376 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~--Dg~I~vWd~~t~~ 376 (590)
.....|++.+.+++++++-...+.|.+.++ .+.....+. ..-.....|++.|.+.+|+.+.. .+.|...++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~--dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNL--DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEEC--CCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 568899999975667777777899999998 344333333 44556789999997555555543 3577777776443
Q ss_pred EEEEc-cCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEE
Q 007757 377 VIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRV 455 (590)
Q Consensus 377 ~~~~~-~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~i 455 (590)
..... .....+..+.+.+.. +.++++-...+.|..+|+..................|++..+ ..+++-...+.|..
T Consensus 162 ~~~l~~~~~~~P~Glald~~~--~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~ 238 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEE--QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILA 238 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTT--TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred eEEEEeCCCCCCcEEEEEccC--CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEE
Confidence 32222 233455667776643 366666667788999998754333222222233456677654 44555556678888
Q ss_pred EECCCCcEEEEeecC----------CC--------------CcccEEEE-cC----------CC--------------C-
Q 007757 456 WEFGIPVVIKYISEP----------HM--------------HSMPSISL-HP----------NT--------------N- 485 (590)
Q Consensus 456 wdl~~~~~~~~~~~~----------~~--------------~~i~~i~~-sp----------~g--------------~- 485 (590)
.|..++.....+... |. +....+++ +| .| .
T Consensus 239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 318 (619)
T 3s94_A 239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE 318 (619)
T ss_dssp EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence 887554332222110 00 00111222 11 11 1
Q ss_pred EEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCCCE
Q 007757 486 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVC 564 (590)
Q Consensus 486 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h~~~V 564 (590)
+|+. +..+.|+..++.............+ -..+..++|.+.+..|+..+ ..+.|+.+++........+...-..+
T Consensus 319 ~Ll~-~~~~~i~~i~l~~~~~~~~~~~~~~---l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p 394 (619)
T 3s94_A 319 LLLL-ARRTDLRRISLDTPDFTDIVLQLED---IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHP 394 (619)
T ss_dssp EEEE-EESSCEEEEESSSTTCCCEECCCSC---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred EEEE-EcccceEEEecCCCccceeEEeccc---cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCc
Confidence 2222 2234555555543321111111111 12356789998666655554 57889999887644433333333455
Q ss_pred EEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 565 IGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
.++++.+.++.+.++-+..+.|.+
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEecccCcEEEEeCCCCcEEE
Confidence 678877645555555444555554
No 298
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.77 E-value=0.0011 Score=74.90 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=106.6
Q ss_pred EEEe-cCCCCCcEEEEEEcCC----cEEEEECCCC-ceEE-EEcccCCceeEEEEeCCCCEEEEEeCC-----CcEEEEE
Q 007757 390 VKLN-PDDDKQNILLAGMSDK----KIVQWDMNTK-EITQ-EYDQHLGAVNTITFVDSNRRFVTSSDD-----KSLRVWE 457 (590)
Q Consensus 390 ~~~~-~~~~~~~~lvsg~~dg----~I~vwDl~t~-~~~~-~~~~h~~~V~~i~~~p~~~~l~s~s~D-----g~I~iwd 457 (590)
..++ |++ ..++++...+| .|+++|+.++ +.+. .+. .....+.|+|+++.|+....+ ..|++++
T Consensus 179 ~~~S~PDG--~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 179 VKPAPPEH--DLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEECTTTT--CEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred eEecCCCC--CEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 4455 443 23444444333 4999999998 6321 111 124578999999988877665 3688888
Q ss_pred CCCCc--EEEEeecCCCCcccEEEEcCCCCEEEEEEcC---CeEEEEEccCceeecccccccCcccccceEEEEEcCCCC
Q 007757 458 FGIPV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532 (590)
Q Consensus 458 l~~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 532 (590)
+.++. ....+..........+.|+|+|++|+..+.. ..|.++|+.+.........+.... ......+.|+.++.
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHGTSH 332 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEETTTE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeeeeCCE
Confidence 87754 2222222233345678999999998877643 468888887641100001111111 22233455544444
Q ss_pred EEEEEeCC----CcEEEEeCCCCeEEEE-EecCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 533 FVMSGDGE----GKCWFWDWKSCKVFRT-LKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 533 ~l~sgs~d----g~I~iwd~~t~~~~~~-l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
+++....+ ..|..+++.++..... +..|.. .+..+.+. +..++++...+|..+||
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 44454443 3677788765322222 333443 34555554 45577777778876654
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.70 E-value=0.013 Score=66.21 Aligned_cols=215 Identities=7% Similarity=-0.069 Sum_probs=131.8
Q ss_pred CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC----ceEEEEcccCCceeEEEEe
Q 007757 363 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFV 438 (590)
Q Consensus 363 ~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~----~~~~~~~~h~~~V~~i~~~ 438 (590)
....|+..++........+.....+..+.+.+. .+.++++-...+.|+.+++... .....+.........|++.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~--~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeeccc--CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 346788888887766555555555556666653 3367777777788999998753 3334444455677889998
Q ss_pred CCCCE-EEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC--CeEEEEEccCceeecccccccC
Q 007757 439 DSNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--NQILIYSTRERFQLNKKKRFAG 515 (590)
Q Consensus 439 p~~~~-l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~~~ 515 (590)
+.++. +++-...+.|.+.++........+. ........|+++|.+.+|+..... +.|...++.......... .
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~---~ 555 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---E 555 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC---S
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe---C
Confidence 77654 4555667899999997655433332 344567899999987776666532 678888886543322111 1
Q ss_pred cccccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecC--CCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 516 HIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCH--EGVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 516 ~~~~~~v~~v~~spdg~~l~sgs-~dg~I~iwd~~t~~~~~~l~~h--~~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
. -.....|++++.+..|+.++ ..+.|..+++........+... -....+|++.. ..++++-...+.|.
T Consensus 556 ~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 556 N--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIF 626 (791)
T ss_dssp S--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred C--CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEE
Confidence 1 13456799998777776665 4568999998655444444332 22345666643 33344433344444
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.65 E-value=0.021 Score=62.78 Aligned_cols=228 Identities=9% Similarity=-0.020 Sum_probs=132.7
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe-CCCeEEEEECCCCcE-EEEccCC-CCceEEEEecCCC
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDD 397 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t~~~-~~~~~~~-~~~~~~~~~~~~~ 397 (590)
...|+..++.........+......+..|+|++.+..|+.+. ..+.|..+++..... ...+..+ ..+..+++.+..
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~- 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG- 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-
Confidence 467888887322112222333445678999999666666554 468899999876532 2223222 456677777643
Q ss_pred CCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEEEeecCCCCcc
Q 007757 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHMHSM 475 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~--Dg~I~iwdl~~~~~~~~~~~~~~~~i 475 (590)
++++++-...+.|.+.++........+.........|++.|.+.+|+.+.. .+.|...++......... .......
T Consensus 96 -~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~~P 173 (619)
T 3s94_A 96 -EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSEIYWP 173 (619)
T ss_dssp -TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSSE
T ss_pred -CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-eCCCCCC
Confidence 367777777899999999865443444345566789999997666655543 356777776543332222 2244567
Q ss_pred cEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 007757 476 PSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 554 (590)
Q Consensus 476 ~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~ 554 (590)
..|++++.+..|+.+. ..+.|..+++.............. ....+++..+ .+.++-...+.|...|..+++..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-----~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-----HPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCC-----CceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 8999999766666654 457788888865433322110111 1224666555 34444446778999998777654
Q ss_pred EEE
Q 007757 555 RTL 557 (590)
Q Consensus 555 ~~l 557 (590)
..+
T Consensus 248 ~~i 250 (619)
T 3s94_A 248 REI 250 (619)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.63 E-value=0.00018 Score=80.57 Aligned_cols=239 Identities=7% Similarity=-0.081 Sum_probs=134.8
Q ss_pred CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEe-CCCeEEEEECCC----CcEEEEccC-CCCceEEEEec
Q 007757 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTET----GQVIRTFST-GKIPYVVKLNP 394 (590)
Q Consensus 321 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s-~Dg~I~vWd~~t----~~~~~~~~~-~~~~~~~~~~~ 394 (590)
.+.|++.++ ....... +......+..|+|.+.+..|+.+. ..+.|+.+++.+ ......+.. ...+..+++.+
T Consensus 385 ~~~I~~id~-~~~~~~~-~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTL-DRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECT-TSCCEEC-CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeC-CCCccee-eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 356777777 3333322 223344677899998666666554 457899999875 222222211 12233444443
Q ss_pred CCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC-C-CcEEEEECCCCcEEEEeecCCC
Q 007757 395 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-D-KSLRVWEFGIPVVIKYISEPHM 472 (590)
Q Consensus 395 ~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-D-g~I~iwdl~~~~~~~~~~~~~~ 472 (590)
. .++++++-...+.|.++++........+.........|++.|.+.+|+.+.. . +.|.++++....... +.....
T Consensus 463 ~--~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-l~~~~l 539 (699)
T 1n7d_A 463 I--HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-LVTENI 539 (699)
T ss_dssp S--SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-ESCSSC
T ss_pred e--CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-EEeCCC
Confidence 3 3356666667789999998765544433333456688899987665555443 2 678887775432222 222233
Q ss_pred CcccEEEEcCCCCEEEEE-EcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007757 473 HSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 551 (590)
Q Consensus 473 ~~i~~i~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~ 551 (590)
.....|+|+|++..|+.+ +..+.|..+++.......... .... ......|++..+ .++++....+.|..++..++
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~--~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKR--LAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC-CSSS--CSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe-cCCc--CCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 456789999976555554 456789999986532221111 1111 111223455443 34445556789999998888
Q ss_pred eEEEEEecCCCCEEEEE
Q 007757 552 KVFRTLKCHEGVCIGCE 568 (590)
Q Consensus 552 ~~~~~l~~h~~~V~~v~ 568 (590)
+.+..+........+|+
T Consensus 616 ~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 616 SDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEECCCTTCSSCCCCC
T ss_pred CceEEeecCCCCCcEEE
Confidence 88777754332334443
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.55 E-value=0.0097 Score=58.63 Aligned_cols=228 Identities=12% Similarity=0.078 Sum_probs=116.1
Q ss_pred CCEEEEEe-CC-----CcEEEEEccCCCeeEEEeccC-CCceeEEEEecCCCEEEEEeCC-----CeEEEEECCCCc---
Q 007757 312 GHLILSAG-MD-----TKVKIWDVVNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQ--- 376 (590)
Q Consensus 312 g~~L~sgs-~D-----g~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fspdg~~l~s~s~D-----g~I~vWd~~t~~--- 376 (590)
+.+++.|+ .+ ..+.+||+. ..+- ..+..- .......+...++.+++.|+.+ ..+.+||+.+.+
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~-~~~W-~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPK-TQEW-SFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETT-TTEE-EECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCC-CCeE-EeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 45566665 22 367888873 3322 112111 1111112222366777777765 468999998876
Q ss_pred EEEE--ccCCCCceEEEEecCCCCCcEEEEEEcC-----CcEEEEECCCCceEEEEcccCCc-eeEEEEeCCCCEEEEEe
Q 007757 377 VIRT--FSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSS 448 (590)
Q Consensus 377 ~~~~--~~~~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~vwDl~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s 448 (590)
.... +........+... ++.+++.|+.+ ..+.+||+.+.+-...-...... -.+++.. +++.++.|+
T Consensus 93 W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECC
Confidence 3333 2222222222222 23577777654 46889999877533322111111 1222222 667777776
Q ss_pred CC-----CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEccCceeecccccccCccc
Q 007757 449 DD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 449 ~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.+ ..+.+||+.+..-. .........
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r- 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT-TVTSMTTPR- 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEE-EECCCSSCC-
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEE-ECCCCCCcc-
Confidence 54 4688999877654433222222222233332 56677777664 46899998764321 111111111
Q ss_pred ccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 007757 519 AGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 552 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~ 552 (590)
.....+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 245 -~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 245 -CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp -BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred -cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11112222 67777777654 357888987654
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.51 E-value=0.02 Score=56.46 Aligned_cols=228 Identities=8% Similarity=0.016 Sum_probs=116.6
Q ss_pred CCEEEEEeCC--CcEEEEEccCCCeeEEEecc-CCCceeEEEEecCCCEEEEEeCC----CeEEEEECCCCcEEEEcc--
Q 007757 312 GHLILSAGMD--TKVKIWDVVNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASYD----KNIKYWDTETGQVIRTFS-- 382 (590)
Q Consensus 312 g~~L~sgs~D--g~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fspdg~~l~s~s~D----g~I~vWd~~t~~~~~~~~-- 382 (590)
+.+++.|+.+ ..+.+||.. ..+-. .+.. ........+..-++.+++.|+.+ ..+.+||+.+++-...-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~-~~~W~-~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPK-DYSWT-DIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETT-TTEEE-ECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCC-CCCEe-cCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3455666543 568888873 33221 1111 11111111122366777777755 678899998876544322
Q ss_pred CCCCceEEEEecCCCCCcEEEEEEcC------CcEEEEECCCCceEEEEcccCC-ceeEEEEeCCCCEEEEEeC------
Q 007757 383 TGKIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSD------ 449 (590)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~lvsg~~d------g~I~vwDl~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~------ 449 (590)
.......+... ++.+++.|+.+ ..+.+||+.+.+-...-..... .-.+++.. ++..++.|+.
T Consensus 90 ~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 90 TPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVS 164 (306)
T ss_dssp SCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTT
T ss_pred ccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCc
Confidence 22222222222 23577777765 4689999988753332111111 11222222 5666666653
Q ss_pred ---CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEccCceeecccccccCcccccc
Q 007757 450 ---DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAGY 521 (590)
Q Consensus 450 ---Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~ 521 (590)
-..+.+||+.+..-...-..+....-.+++.. ++++++.|+.+ ..+.+||+.+.. ......+... ...
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~--r~~ 240 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWK--GVT 240 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCC--BSC
T ss_pred ccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCC--ccc
Confidence 34588999987754433222222222233333 56667766543 468899987642 1111111111 111
Q ss_pred eEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 007757 522 ACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 552 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~ 552 (590)
...+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 122223 67777787743 468999987754
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.47 E-value=0.077 Score=53.80 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=119.6
Q ss_pred CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcE--EEEcc----CCCCceEEEEecCCC-CCcEEEEEEcC-----Cc
Q 007757 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV--IRTFS----TGKIPYVVKLNPDDD-KQNILLAGMSD-----KK 410 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~--~~~~~----~~~~~~~~~~~~~~~-~~~~lvsg~~d-----g~ 410 (590)
-..-..|+|.|+|++++ +..+|.|.+++ .+.. +..+. ....+.-+++.++-. ++.++++-... +.
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34567999999998554 55679999998 4432 22221 123455677776521 22344444332 67
Q ss_pred EEEEECCCCc------eEEEEc---ccCCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCC-------
Q 007757 411 IVQWDMNTKE------ITQEYD---QHLGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIP------- 461 (590)
Q Consensus 411 I~vwDl~t~~------~~~~~~---~h~~~V~~i~~~p~~~~l~s~s~D-------------g~I~iwdl~~~------- 461 (590)
|..|+...+. ++..+. ........|.|.|+|.++++.+.. |.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888877542 112233 111234689999999776665432 44555554320
Q ss_pred -----cEEEEeecCCCCcccEEEEcC-CCCEEEEEEcCCeE------EEEEccCcee---------------eccccccc
Q 007757 462 -----VVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQI------LIYSTRERFQ---------------LNKKKRFA 514 (590)
Q Consensus 462 -----~~~~~~~~~~~~~i~~i~~sp-~g~~l~s~s~dg~I------~iwd~~~~~~---------------~~~~~~~~ 514 (590)
.....+...+ .....++|+| ++.++++-...+.+ .|.-+..+.. ......+.
T Consensus 187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 0001111112 2356789999 56655554333331 1222222110 00111111
Q ss_pred CcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE------EEEEecCCCCEEEEEEcCCCCCEEEEEe-CCC
Q 007757 515 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV------FRTLKCHEGVCIGCEWHPLEQSKVATCG-WDG 584 (590)
Q Consensus 515 ~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~------~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG 584 (590)
.+ .....++| .+|.++++.-..+.|...++..... ...+-.-...+.++++.| ++.++++.. .+|
T Consensus 266 ~~---~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~~~~~~g 337 (352)
T 2ism_A 266 QG---FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP-DGALYVTTSNRDG 337 (352)
T ss_dssp TC---CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT-TSCEEEEECSTTT
T ss_pred CC---CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC-CCcEEEEEeCCCC
Confidence 11 22445666 4676666666677788887754321 122222235789999999 455655543 344
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.46 E-value=0.019 Score=56.50 Aligned_cols=188 Identities=10% Similarity=0.111 Sum_probs=99.3
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEccC--CCCceEEEEecCCCCCcEEEEEEcCC-----cEEEEECCCCce
Q 007757 354 DGTKFLTASYD-----KNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEI 421 (590)
Q Consensus 354 dg~~l~s~s~D-----g~I~vWd~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg-----~I~vwDl~t~~~ 421 (590)
++..++.|+.+ ..+.+||..+.+-...-.. ......+... ++.+++.|+.++ .+.+||+.+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 66777777754 3588999988765443322 2222222222 236777777653 578899887753
Q ss_pred EEEEcccC-CceeEEEEeCCCCEEEEEeCC-------CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC
Q 007757 422 TQEYDQHL-GAVNTITFVDSNRRFVTSSDD-------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493 (590)
Q Consensus 422 ~~~~~~h~-~~V~~i~~~p~~~~l~s~s~D-------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d 493 (590)
...-.... ..-.+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.+
T Consensus 137 ~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~ 214 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHD 214 (302)
T ss_dssp EEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBS
T ss_pred eecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCC
Confidence 33211111 111222222 56667766542 4588999877654433222222222233333 56777777654
Q ss_pred -----CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCe
Q 007757 494 -----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSCK 552 (590)
Q Consensus 494 -----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-----~I~iwd~~t~~ 552 (590)
+.+.+||+.+..=. ......... .....+.+ ++++++.|+.++ .+.+||..+.+
T Consensus 215 ~~~~~~~~~~yd~~~~~W~-~~~~~~~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWR-QVADMNMCR--RNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSSBCCCEEEEETTTTEEE-EECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCcccceEEEEeCCCCCEe-eCCCCCCcc--ccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 46889998764311 111111111 11111222 677777777543 48999987764
No 306
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.38 E-value=0.058 Score=54.01 Aligned_cols=230 Identities=8% Similarity=0.024 Sum_probs=116.9
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec---cCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~ 375 (590)
...+.+|.|.+ +..++ ++..+.|.. ....++.-.... .+...+..|.+.+++..++++ .+|.|.. ..+.|
T Consensus 79 ~~~~~~i~~~~--~~~~~-~g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG 151 (327)
T 2xbg_A 79 DYRFNSVSFQG--NEGWI-VGEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSG 151 (327)
T ss_dssp CCEEEEEEEET--TEEEE-EEETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTT
T ss_pred CccEEEEEecC--CeEEE-EECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCC
Confidence 34588888875 34444 455664433 323344333322 234567888888777666555 4554422 22333
Q ss_pred cEEEEccCCC--CceEEEEecCCCCCcEEEEEEcCCcEEEE-EC--CCCceEEEEcccCCceeEEEEeCCCCEEEEEeCC
Q 007757 376 QVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQW-DM--NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450 (590)
Q Consensus 376 ~~~~~~~~~~--~~~~~~~~~~~~~~~~lvsg~~dg~I~vw-Dl--~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~D 450 (590)
+.-....... ....+.+.+. ..++++ +..|.|+.- |- .+-+.+ -......+..+.+.+++..+ .++.+
T Consensus 152 ~tW~~~~~~~~~~~~~~~~~~~---~~~~~~-g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 152 KNWQALVQEAIGVMRNLNRSPS---GEYVAV-SSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp SSEEEEECSCCCCEEEEEECTT---SCEEEE-ETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETT
T ss_pred CCCEEeecCCCcceEEEEEcCC---CcEEEE-ECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCC
Confidence 3222222222 2333444442 244444 455555543 32 222222 12345678889998888655 45567
Q ss_pred CcEEEEECCCCcEEEEeecC---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEE
Q 007757 451 KSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 527 (590)
Q Consensus 451 g~I~iwdl~~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 527 (590)
|.+++.+...+.....+..+ ....+.++.+.+++..++++ .++.| ++....+............ ...+..+.|
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~--~~~~~~v~~ 300 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKV--PSNFYKILF 300 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTS--SSCCCEEEE
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCC--CCCeEEEEE
Confidence 87777643323332222222 22357888898877766664 46766 3444434332222211111 123445777
Q ss_pred cCCCCEEEEEeCCCcEEEEe
Q 007757 528 SPDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 528 spdg~~l~sgs~dg~I~iwd 547 (590)
.+++. +++++.+|.|.-++
T Consensus 301 ~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 301 FSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EETTE-EEEECSTTEEEEEC
T ss_pred ECCCc-eEEEcCCceEEEEc
Confidence 75554 55666788877665
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.30 E-value=0.014 Score=57.42 Aligned_cols=217 Identities=11% Similarity=0.042 Sum_probs=109.6
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCcEEEEccCC--CCceEEEEecCCCCCcEEEEEEcC-----CcEEEEECCCCc
Q 007757 354 DGTKFLTAS-YD-----KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKE 420 (590)
Q Consensus 354 dg~~l~s~s-~D-----g~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~vwDl~t~~ 420 (590)
++.+++.|+ .+ ..+.++|+.+.+....-... .....+.. . ++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-L---HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E---TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-E---CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 344555555 22 46888998887644332211 11222222 2 23677777755 469999998876
Q ss_pred ---eEEEEcccCC-ceeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007757 421 ---ITQEYDQHLG-AVNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 421 ---~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s 491 (590)
-...-..... .-.+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++++++.|+
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECC
T ss_pred CCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECC
Confidence 3322111111 11222222 56677777643 3588899877654433222222222233332 666777776
Q ss_pred cC-----CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE--Eec
Q 007757 492 LD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKC 559 (590)
Q Consensus 492 ~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~~~~~--l~~ 559 (590)
.+ ..+.+||+.+..=. ......... .....+.+ ++++++.|+.+ ..+.+||+.+.+-... +..
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r--~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWT-NVTPMATKR--SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEE-EECCCSSCC--BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CCCCcccceEEEEeCCCCcEE-eCCCCCccc--ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 54 45889998664311 111111111 11112222 56777777653 4689999987654322 111
Q ss_pred CCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 560 HEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 560 h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
.......+.+ ++.+++.||.++
T Consensus 243 ~r~~~~~~~~---~~~i~v~GG~~~ 264 (301)
T 2vpj_A 243 PRCYVGATVL---RGRLYAIAGYDG 264 (301)
T ss_dssp CCBSCEEEEE---TTEEEEECCBCS
T ss_pred cccceeEEEE---CCEEEEEcCcCC
Confidence 1111222333 455777777653
No 308
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.30 E-value=0.034 Score=55.15 Aligned_cols=226 Identities=10% Similarity=0.097 Sum_probs=113.6
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEE-EeccCCCceeEEEEecCCCEEEEEeC----C-------CeEEEEECCCCcEEEEc
Q 007757 314 LILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY----D-------KNIKYWDTETGQVIRTF 381 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~----D-------g~I~vWd~~t~~~~~~~ 381 (590)
+++.|+ ..+.+||.. ..+-.. .+..............++..++.|+. + ..+.+||..+++-...-
T Consensus 7 l~~~GG--~~~~~yd~~-~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPA-ANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETT-TTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCC-CCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 444555 568899983 443222 22212222333333457788888874 1 23778899887654322
Q ss_pred cCCCC--ceEEEEecCCCCCcEEEEEEcC--------CcEEEEECCCCceEEEEcccCCc-eeEEEEeCCCCEEEEEeC-
Q 007757 382 STGKI--PYVVKLNPDDDKQNILLAGMSD--------KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDSNRRFVTSSD- 449 (590)
Q Consensus 382 ~~~~~--~~~~~~~~~~~~~~~lvsg~~d--------g~I~vwDl~t~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~- 449 (590)
..... ...+... ++.+++.|+.+ ..+.+||+.+.+-...-...... -.+++. -+++.++.|+.
T Consensus 84 ~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 158 (315)
T 4asc_A 84 PLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKG 158 (315)
T ss_dssp CBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred CCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCC
Confidence 22111 1122222 23567777642 46899999887532211111111 122222 35667777765
Q ss_pred -----CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC-----eEEEEEccCceeecccccccCcccc
Q 007757 450 -----DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVA 519 (590)
Q Consensus 450 -----Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~ 519 (590)
-..+.+||..+..-...-..+....-.+++.. ++++++.|+.++ .+.+||+.+.. ...........
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r-- 234 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQER-- 234 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCC--
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcc--
Confidence 24689999877654332211222222233333 667777777654 58888887642 11111111111
Q ss_pred cceEEEEEcCCCCEEEEEeCC--------------CcEEEEeCCCCeE
Q 007757 520 GYACQVNFSPDGRFVMSGDGE--------------GKCWFWDWKSCKV 553 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~d--------------g~I~iwd~~t~~~ 553 (590)
.....+.+ ++++++.|+.+ ..|.+||..+.+-
T Consensus 235 ~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 235 SSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp BSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred cceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 11112222 56777777653 2477888877643
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.29 E-value=0.035 Score=56.28 Aligned_cols=206 Identities=14% Similarity=0.248 Sum_probs=116.7
Q ss_pred ceeEEEEecCCCEEEEEe------------CCCeEEEEECCC--CcEEEEccC-C-------CCceEEEEecCCCCC-cE
Q 007757 345 AVRDISFCNDGTKFLTAS------------YDKNIKYWDTET--GQVIRTFST-G-------KIPYVVKLNPDDDKQ-NI 401 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s------------~Dg~I~vWd~~t--~~~~~~~~~-~-------~~~~~~~~~~~~~~~-~~ 401 (590)
..-++...++|..+++++ .+|.|.++|..+ ++.. .+.. + -.+.-+.+..+.+.. .+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 455667777776555552 689999999873 3322 2221 1 244555655542222 35
Q ss_pred EEEEEc--CCcEEEEECCCC----ceEEEEccc-CCceeEEEEeCCCCEEEEEeC-----------------CCcEEEEE
Q 007757 402 LLAGMS--DKKIVQWDMNTK----EITQEYDQH-LGAVNTITFVDSNRRFVTSSD-----------------DKSLRVWE 457 (590)
Q Consensus 402 lvsg~~--dg~I~vwDl~t~----~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~-----------------Dg~I~iwd 457 (590)
+++-.. +..|.+|++... ..+..+.+. ....+.+.+.++|+++++... .|.|+.+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 555444 467777766543 223344332 246789999999987776541 24555555
Q ss_pred CCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceeecccccccCcccccceEEEEEcC-CCCEEE
Q 007757 458 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVM 535 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~ 535 (590)
.. . +..+. ......+.++|+|++++|+++. ..+.|..|++.....+.....+. ..+..-.+++.+ +|++.+
T Consensus 210 ~~--~-~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 210 PN--D-VRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp TT--C-CEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEE
T ss_pred CC--e-EEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEE
Confidence 43 2 22222 1234567899999998887775 46889999986422222222231 134556789999 598877
Q ss_pred EEeCC-CcEEEEeCC--CCeEEEEEe
Q 007757 536 SGDGE-GKCWFWDWK--SCKVFRTLK 558 (590)
Q Consensus 536 sgs~d-g~I~iwd~~--t~~~~~~l~ 558 (590)
++..+ +.|..|+.. .+..+..++
T Consensus 283 a~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 283 GCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EecCCceEEEEECCCCCCCCEEEEEE
Confidence 66533 344444433 244444443
No 310
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.25 E-value=0.35 Score=53.04 Aligned_cols=156 Identities=6% Similarity=-0.030 Sum_probs=101.7
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEe-ccCCCceeEEEEecCCCEEEEEeC--CCeEEEEECCCCc
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY-MGHSKAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQ 376 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~h~~~V~~l~fspdg~~l~s~s~--Dg~I~vWd~~t~~ 376 (590)
.....|++.+.+++++++-...+.|.+.++. +.....+ ...-.....|++.|....|+.+.. .+.|...++....
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d--G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLD--GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETT--STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecC--CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 4577889987756677777778889999983 3323333 244456789999985555555543 4678888887655
Q ss_pred EEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEE
Q 007757 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456 (590)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iw 456 (590)
....+.....+..+++.+.. +.++++-...+.|..+|+..... ..+.........|++.. +..+++-...+.|...
T Consensus 158 ~~~l~~~~~~P~GlalD~~~--~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAK--RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp CEEEECSCSSEEEEEEETTT--TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred eEEEECCCCCcceEEEcccc--CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 44444444556667776643 35666667778999999976543 33333444556788865 4555565567888888
Q ss_pred ECCCC
Q 007757 457 EFGIP 461 (590)
Q Consensus 457 dl~~~ 461 (590)
|..++
T Consensus 234 dk~tg 238 (628)
T 4a0p_A 234 NKTSG 238 (628)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 86444
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.21 E-value=0.12 Score=52.29 Aligned_cols=227 Identities=9% Similarity=0.101 Sum_probs=117.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEec---cCCCceeEEEEecC---CCEEEEEeC-C-----Ce
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM---GHSKAVRDISFCND---GTKFLTASY-D-----KN 366 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fspd---g~~l~s~s~-D-----g~ 366 (590)
-..-..|+|.|+ |.+++ +..+|.|++++ ......+..+. ........|+|+|+ +..|+.+.. . +.
T Consensus 30 l~~P~~ia~~pd-G~l~V-~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPD-GGMLI-AERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTT-SCEEE-EETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCC-CeEEE-EeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999 77555 46679999988 22222222221 22456889999998 555554433 2 67
Q ss_pred EEEEECCCCc-----EE-EEcc----CCCCceEEEEecCCCCCcEEEEEEc-------------CCcEEEEECCC-----
Q 007757 367 IKYWDTETGQ-----VI-RTFS----TGKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDMNT----- 418 (590)
Q Consensus 367 I~vWd~~t~~-----~~-~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~-------------dg~I~vwDl~t----- 418 (590)
|..|+...+. .+ ..+. ..+....+.+.+++ .++++.+. .|.|.-++...
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG---~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG---MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS---CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC---CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 8888876542 11 1132 12344566776654 44444321 25677776653
Q ss_pred ---------CceEEEEcccCCceeEEEEeC-CCCEEEEEeCCCc--------EEEEECCC----------------CcEE
Q 007757 419 ---------KEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKS--------LRVWEFGI----------------PVVI 464 (590)
Q Consensus 419 ---------~~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg~--------I~iwdl~~----------------~~~~ 464 (590)
...+... ++ .....++|+| ++..+++-..... |.+..-.. ..++
T Consensus 184 npf~~~~~~~~~i~a~-G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 184 NPFLGRRGARPEVYSL-GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTTTCTTSCTTEEEE-CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CcccCCCCCCccEEEE-cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 1111111 22 2356788998 5665555433332 32221110 0011
Q ss_pred EEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee---ecccccccCcccccceEEEEEcCCCCEEEEEe
Q 007757 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 465 ~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
..+ ........++| .++.++++....+.|...++..... ......+.. ....+..+++.|||.+.++..
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 111 11223456666 4566666655667788777654321 000111111 124567899999998776654
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.16 E-value=0.0024 Score=71.37 Aligned_cols=206 Identities=12% Similarity=0.043 Sum_probs=117.4
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCC---CeeEEEeccCCCceeEEEEecC-CCEEEEEeCCCeEEEEECCCC
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS---GKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG 375 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~---~~~~~~~~~h~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~ 375 (590)
..+..|+|.+..+.++++-...+.|+.+++... ......+.........|++.+. ++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456788999874555555556788999988320 1111222222234567888864 444555456788999998866
Q ss_pred cEEEEccC-CCCceEEEEecCCCCCcEEEEEEcC-CcEEEEECCCCceEEEEcccCCceeEEEEeCCCC-EEEEEeCCCc
Q 007757 376 QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSD-KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKS 452 (590)
Q Consensus 376 ~~~~~~~~-~~~~~~~~~~~~~~~~~~lvsg~~d-g~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~-~l~s~s~Dg~ 452 (590)
.....+.. ...+..+++.+.. +.++++-... +.|..+++........+.......+.|+|++++. ++++-+..+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~ 563 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred ceEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence 54444432 2344555555533 3455554333 7888887754332222222344567899998755 4455556778
Q ss_pred EEEEECCCCcEEEEeec-CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec
Q 007757 453 LRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 453 I~iwdl~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
|.++++........+.. ........|++..+ .++++....+.|..++..++..+.
T Consensus 564 I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 564 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 99999865433332221 12233455666544 344454556889999876655443
No 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.14 E-value=0.035 Score=54.95 Aligned_cols=227 Identities=10% Similarity=0.033 Sum_probs=113.1
Q ss_pred CCEEEEEeCC----CcEEEEEccCCCeeEEEeccC-CCce-eEEEEecCCCEEEEEeC----C-----CeEEEEECCCCc
Q 007757 312 GHLILSAGMD----TKVKIWDVVNSGKCMRTYMGH-SKAV-RDISFCNDGTKFLTASY----D-----KNIKYWDTETGQ 376 (590)
Q Consensus 312 g~~L~sgs~D----g~I~iWd~~~~~~~~~~~~~h-~~~V-~~l~fspdg~~l~s~s~----D-----g~I~vWd~~t~~ 376 (590)
+.+++.|+.+ ..+.+||. ...+-. .+..- .... .+++ .-++.+++.|+. + ..+.+||+.+.+
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~-~~~~W~-~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNP-SNGTWL-RLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEET-TTTEEE-ECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCCcceEEEEcC-CCCeEe-ECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4566666532 35788887 333221 12111 1111 1222 226667777765 2 468889998876
Q ss_pred EEEEccC--CCCceEEEEecCCCCCcEEEEEEcC-----CcEEEEECCCCceEEEEcccCC-ceeEEEEeCCCCEEEEEe
Q 007757 377 VIRTFST--GKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 377 ~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~vwDl~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s 448 (590)
....-.. ......+... ++.+++.|+.+ ..+.+||+.+.+-...-..... .-.+++.. ++..++.|+
T Consensus 102 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred EeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 5443221 2222222222 22567776643 4688999987653322111111 11222222 566777776
Q ss_pred CC-----CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEccCceeecccccccCccc
Q 007757 449 DD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 518 (590)
Q Consensus 449 ~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~ 518 (590)
.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.+ ..+.+||+.+..=. ....+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r- 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWT-FVAPMKHRR- 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEE-ECCCCSSCC-
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEE-ECCCCCCCc-
Confidence 54 4588999877654332211222222233333 66677777654 56899998764311 111111111
Q ss_pred ccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 007757 519 AGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 552 (590)
Q Consensus 519 ~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~ 552 (590)
.....+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 254 -~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 -SALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp -BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred -cceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 11111222 66777777643 357888887654
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.10 E-value=0.04 Score=54.22 Aligned_cols=215 Identities=8% Similarity=0.009 Sum_probs=106.2
Q ss_pred CEEEEEeCC----CeEEEEECCCCcEEEEccC--CCCceEEEEecCCCCCcEEEEEEcC-----CcEEEEECCCCceEEE
Q 007757 356 TKFLTASYD----KNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQE 424 (590)
Q Consensus 356 ~~l~s~s~D----g~I~vWd~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~d-----g~I~vwDl~t~~~~~~ 424 (590)
.+++.|+.+ ..+.++|+.+.+-...-.. ......+... ++.+++.|+.+ ..+.+||+.+.+-...
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM----AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE----CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344555543 4578888887764433211 1112222222 23577777754 3588999987753322
Q ss_pred EcccCC-ceeEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----
Q 007757 425 YDQHLG-AVNTITFVDSNRRFVTSSDDK-----SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD----- 493 (590)
Q Consensus 425 ~~~h~~-~V~~i~~~p~~~~l~s~s~Dg-----~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d----- 493 (590)
-..... .-.+++.. ++..++.|+.++ .+.+||+.+..-...-..+....-.+++.. ++++++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTE
T ss_pred CCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCc
Confidence 111111 11222222 567777777553 577888877654433222222222233332 56666666542
Q ss_pred --CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE--EecCCCCE
Q 007757 494 --NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKCHEGVC 564 (590)
Q Consensus 494 --g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~~~~~--l~~h~~~V 564 (590)
..+.+||+.+..=. ......... .....+.+ ++++++.|+.+ ..+.+||..+.+-... +.......
T Consensus 171 ~~~~~~~yd~~~~~W~-~~~~~p~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 171 CLSTVECYNATTNEWT-YIAEMSTRR--SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp ECCCEEEEETTTTEEE-EECCCSSCC--BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred cccEEEEEeCCCCcEE-ECCCCcccc--ccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 45888998764311 111111111 11112222 67777777654 3689999887643322 11111111
Q ss_pred EEEEEcCCCCCEEEEEeCCC
Q 007757 565 IGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 565 ~~v~~sp~~~~~l~s~g~DG 584 (590)
..+.+ ++.+++.||.++
T Consensus 246 ~~~~~---~~~i~v~GG~~~ 262 (302)
T 2xn4_A 246 GVCAV---NGLLYVVGGDDG 262 (302)
T ss_dssp EEEEE---TTEEEEECCBCS
T ss_pred eEEEE---CCEEEEECCcCC
Confidence 22222 456777777664
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0074 Score=60.83 Aligned_cols=197 Identities=10% Similarity=0.040 Sum_probs=109.5
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEccCC--CCceEEEEecCCCCCcEEEEE-EcCCcEEEEECCCCceEEEEcc----c
Q 007757 356 TKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQ----H 428 (590)
Q Consensus 356 ~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~lvsg-~~dg~I~vwDl~t~~~~~~~~~----h 428 (590)
.+++.++.||.|.-+|..+|+.+..+... .......-......+..++.. +.||.|+.++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999999999998775 222211111111112333333 5899999999998865544432 1
Q ss_pred CCceeE---EEE-----eCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCc------ccEEEEc-----CCCCEEEE
Q 007757 429 LGAVNT---ITF-----VDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS------MPSISLH-----PNTNWLAA 489 (590)
Q Consensus 429 ~~~V~~---i~~-----~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~------i~~i~~s-----p~g~~l~s 489 (590)
..++.. ..+ ...+..+++++.+|.+...|+.+++.+..+....... ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 0145688899999999999999999988875432111 0111111 12456777
Q ss_pred EEcCCeEEEEEccCceeecccc--cccCcccccce-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 007757 490 QSLDNQILIYSTRERFQLNKKK--RFAGHIVAGYA-CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555 (590)
Q Consensus 490 ~s~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~v-~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~ 555 (590)
+..+..+.+.+ +++. ..... .+........+ ....++.|+.+ +.++.||.|..+|..+|..+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77666666655 3332 11110 00000000000 00011234666 447788888888888888766
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.06 E-value=0.24 Score=50.20 Aligned_cols=233 Identities=10% Similarity=0.048 Sum_probs=122.6
Q ss_pred CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCc-EEEEcc----CCCCceEEEEecCCC-CCcEEEEEEc---C----C
Q 007757 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VIRTFS----TGKIPYVVKLNPDDD-KQNILLAGMS---D----K 409 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~-~~~~~~----~~~~~~~~~~~~~~~-~~~~lvsg~~---d----g 409 (590)
-.....|+|.|+|+ |+.+..+|.|++++ ..++ .+..+. ....+.-+.+.++-. ++.++++-.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 44578999999997 55556679999997 3454 222221 123355677776522 2234444332 3 6
Q ss_pred cEEEEECCCC--c-----e-EEEEcc-cCCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCc-----
Q 007757 410 KIVQWDMNTK--E-----I-TQEYDQ-HLGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPV----- 462 (590)
Q Consensus 410 ~I~vwDl~t~--~-----~-~~~~~~-h~~~V~~i~~~p~~~~l~s~s~D-------------g~I~iwdl~~~~----- 462 (590)
.|..|+.... . . +..+.. .......|.|.|+|.++++.+.. |.|.-++.....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7888887654 1 1 111221 11234679999999877765432 345444443210
Q ss_pred --EEEEeecCCCCcccEEEEcC-CCCEEEEEEcCC---eEEEEEccCce-------------eecccccccCcccccceE
Q 007757 463 --VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDN---QILIYSTRERF-------------QLNKKKRFAGHIVAGYAC 523 (590)
Q Consensus 463 --~~~~~~~~~~~~i~~i~~sp-~g~~l~s~s~dg---~I~iwd~~~~~-------------~~~~~~~~~~~~~~~~v~ 523 (590)
....+...+ .....++|+| ++.++++-...+ .|.+....... .......+. .......
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~ap~ 262 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG--SETWAPS 262 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--TCCCCEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC--CCCcCCc
Confidence 001111122 2456899999 566555433222 23333211100 000111110 0123456
Q ss_pred EEEEc-------CCCCEEEEEeCCCcEEEEeCCCC-eEE--EEEe-cCCCCEEEEEEcCCCCCEEEEEe
Q 007757 524 QVNFS-------PDGRFVMSGDGEGKCWFWDWKSC-KVF--RTLK-CHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 524 ~v~~s-------pdg~~l~sgs~dg~I~iwd~~t~-~~~--~~l~-~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
.++|. .+|.++++.-..+.|...++... +.. ..+. .-...+.++++.| ++.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 67883 56777777777788999888753 332 2332 2245789999999 556666654
No 317
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.04 E-value=0.11 Score=51.39 Aligned_cols=227 Identities=7% Similarity=0.090 Sum_probs=111.2
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEE-EeccCCCceeEEEEecCCCEEEEEeC----CC-------eEEEEECCCCcEEEEc
Q 007757 314 LILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY----DK-------NIKYWDTETGQVIRTF 381 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fspdg~~l~s~s~----Dg-------~I~vWd~~t~~~~~~~ 381 (590)
+++.|+. .+.+||.. ..+-.. .+..............++..++.|+. ++ .+.+||..+.+-...-
T Consensus 18 i~~~GG~--~~~~yd~~-~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPM-ENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETT-TTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCC-CCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 37788873 433222 12211122222333446778888873 11 2778898877654432
Q ss_pred cCC--CCceEEEEecCCCCCcEEEEEEcC-------CcEEEEECCCCceEEEEcccCCce-eEEEEeCCCCEEEEEeC--
Q 007757 382 STG--KIPYVVKLNPDDDKQNILLAGMSD-------KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDSNRRFVTSSD-- 449 (590)
Q Consensus 382 ~~~--~~~~~~~~~~~~~~~~~lvsg~~d-------g~I~vwDl~t~~~~~~~~~h~~~V-~~i~~~p~~~~l~s~s~-- 449 (590)
... .....+... ++.+++.|+.+ ..+.+||+.+.+-...-....... .+++. .++..++.|+.
T Consensus 95 ~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 169 (318)
T 2woz_A 95 PLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTD 169 (318)
T ss_dssp CBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEES
T ss_pred CCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCC
Confidence 221 112222222 23577777754 358889998775332211111111 12222 35667777753
Q ss_pred ----CCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEccCceeecccccccCccccc
Q 007757 450 ----DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAG 520 (590)
Q Consensus 450 ----Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~ 520 (590)
-..+.+||+.+..-...-..+....-.+++.. ++++++.|+.+ ..+.+||+.+.. ........... .
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~ 245 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQER--S 245 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCC--B
T ss_pred CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcc--c
Confidence 24589999987654433222222222233333 56677776643 357788886542 11112121111 1
Q ss_pred ceEEEEEcCCCCEEEEEeCC--------------CcEEEEeCCCCeEE
Q 007757 521 YACQVNFSPDGRFVMSGDGE--------------GKCWFWDWKSCKVF 554 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~d--------------g~I~iwd~~t~~~~ 554 (590)
....+. -++++++.|+.+ ..+.+||..+.+-.
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 111122 256677777643 35888998776543
No 318
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.02 E-value=0.65 Score=52.01 Aligned_cols=299 Identities=9% Similarity=0.075 Sum_probs=156.3
Q ss_pred ccccccceeecCCCccccCCCCc---cCCcceeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEe
Q 007757 263 ETDYQGRSWIAPPKDAKAANDHC---YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY 339 (590)
Q Consensus 263 ~~d~~~r~w~~~~~~~~~~~~~~---~~p~~~v~~l~gH~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~ 339 (590)
..|..|..|+.....+...+... +.+.. ......|.+|....+ ..|..|+.+| +..||.. ........
T Consensus 28 ~qD~~G~lWigT~~GL~ryDG~~~~~~~~~~-----~~~~~~i~~i~~d~~--g~lWigT~~G-l~~yd~~-~~~f~~~~ 98 (758)
T 3ott_A 28 LQDSEGLIWIGSNKGLFSYDGYSTQQHFTYG-----ENNNTRIYCGVIIDN--TYLYMGTDNG-ILVYNYR-ADRYEQPE 98 (758)
T ss_dssp EECTTSCEEEEESSCEEEECSSCEEECSCTT-----STTSSCEEEEEEETT--TEEEEEETTE-EEEEETT-TTEECCCS
T ss_pred EECCCCCEEEEECCCccccCCCceEEEEccC-----CCCCceEEEEEEcCC--CcEEEEeCCC-eEEEeCC-CCEEECcc
Confidence 35788999988765543322111 11100 112356888877665 4666677666 7788873 33322111
Q ss_pred ccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEcc---CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC
Q 007757 340 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416 (590)
Q Consensus 340 ~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl 416 (590)
......|.++.. .+| .|..++.+ -|..+|..+++...... ......+.++..+.. +. +.+|+. +.|..++.
T Consensus 99 ~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g~-lWigt~-~Gl~~~~~ 172 (758)
T 3ott_A 99 TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKD-NQ-IYVGTY-NGLCRYIP 172 (758)
T ss_dssp CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTT-CC-EEEEET-TEEEEEET
T ss_pred cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCC-CC-EEEEeC-CCHhhCcc
Confidence 112335777654 355 46666665 68889988776543311 111122334444332 23 445555 45888898
Q ss_pred CCCceEEEEccc------CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEE
Q 007757 417 NTKEITQEYDQH------LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 490 (590)
Q Consensus 417 ~t~~~~~~~~~h------~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~ 490 (590)
.++.... +... ...|.++....++..|..|+. +-|..++..+...... .......|.++....+|.+.+ |
T Consensus 173 ~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWi-g 248 (758)
T 3ott_A 173 SNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQT-EAFHNNSIKSLALDGNGDLLA-G 248 (758)
T ss_dssp TTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEE-EEEEEEEEEEEEECTTCCEEE-E
T ss_pred CCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEec-cCCCCCeEEEEEEcCCCCEEE-E
Confidence 7765432 2111 124788888777766555554 4588888776543222 111234578888887776554 4
Q ss_pred EcCCeEEEEEccCceeeccccc--ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-------cCC
Q 007757 491 SLDNQILIYSTRERFQLNKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-------CHE 561 (590)
Q Consensus 491 s~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~-------~h~ 561 (590)
+. +-+.+++..+......... .........|.++....+|.+. .|+..| +.++.... ....+. ...
T Consensus 249 T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~ 323 (758)
T 3ott_A 249 TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDYG-ISLSRYNS--ALQFIPISQITGTGDG 323 (758)
T ss_dssp ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESSS-EEEECCCC---CEEEEHHHHSCSCCC
T ss_pred eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCCc-ccccccCC--ceeEEecccCCCCCCC
Confidence 44 5688888755321111000 0011223457788888877654 455556 55543322 112221 112
Q ss_pred CCEEEEEEcCCCCCEEEEEeCCCcEE
Q 007757 562 GVCIGCEWHPLEQSKVATCGWDGLIK 587 (590)
Q Consensus 562 ~~V~~v~~sp~~~~~l~s~g~DG~I~ 587 (590)
..|.++.-.. ++.+. .|+.+|.++
T Consensus 324 ~~v~~i~~D~-~g~lW-iGt~~Gl~~ 347 (758)
T 3ott_A 324 NQFYSLFRDS-KGFYW-FGGANGLIR 347 (758)
T ss_dssp CBEEEEEECT-TCCEE-EEETTEEEE
T ss_pred ceEEEEEEcC-CCCEE-EeeCCccee
Confidence 3577776665 34333 344455443
No 319
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.01 E-value=0.19 Score=56.39 Aligned_cols=233 Identities=10% Similarity=0.052 Sum_probs=122.8
Q ss_pred CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE
Q 007757 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~ 422 (590)
...|.+|.-..+|. |..|+.+| |..||-...+............+.++..+.. ..|.+|+.+ .+..||..+....
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~--g~lWigT~~-Gl~~yd~~~~~f~ 95 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDN--TYLYMGTDN-GILVYNYRADRYE 95 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETT--TEEEEEETT-EEEEEETTTTEEC
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCC--CcEEEEeCC-CeEEEeCCCCEEE
Confidence 45789998888775 55566666 5556632211110011111222333333332 457777765 4889999876433
Q ss_pred EEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEee---cCCCCcccEEEEcCCCCEEEEEEcCCeEEEE
Q 007757 423 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS---EPHMHSMPSISLHPNTNWLAAQSLDNQILIY 499 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iw 499 (590)
.........|.++.. .++ .|..++.+ .|..+|..+........ ......|.++....++.+.+ ++. +.|..|
T Consensus 96 ~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~ 170 (758)
T 3ott_A 96 QPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRY 170 (758)
T ss_dssp CCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEE
T ss_pred CcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhC
Confidence 211112234666654 344 55556655 58889987655433211 11234577888777776554 444 457788
Q ss_pred EccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007757 500 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 500 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
+..+..................|.++...+++..|..|+. +-|..+|..+++...........|.++.... ++.+. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-i 247 (758)
T 3ott_A 171 IPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLL-A 247 (758)
T ss_dssp ETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEE-E
T ss_pred ccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEE-E
Confidence 8765432111000001111234677877777776666664 4588899877654322111233577777765 44443 3
Q ss_pred EeCCCcEEEe
Q 007757 580 CGWDGLIKYW 589 (590)
Q Consensus 580 ~g~DG~I~iW 589 (590)
|+.+| |.++
T Consensus 248 gT~~G-l~~~ 256 (758)
T 3ott_A 248 GTDNG-LYVY 256 (758)
T ss_dssp EETTE-EEEE
T ss_pred EeCCc-eeEE
Confidence 44444 4444
No 320
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.00 E-value=0.37 Score=48.76 Aligned_cols=228 Identities=11% Similarity=0.057 Sum_probs=120.8
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe-eEEEec---cCCCceeEEEEecC---CCEEEEEeC----C---
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK-CMRTYM---GHSKAVRDISFCND---GTKFLTASY----D--- 364 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~---~h~~~V~~l~fspd---g~~l~s~s~----D--- 364 (590)
-.....|+|.|+ +. |+.+..+|.|++++. .+. .+..+. ........|+|+|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pd-G~-l~V~e~~g~I~~~d~--~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGG-GR-YLVTERPGRLVLISP--SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEET-TE-EEEEETTTEEEEECS--SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCC-Ce-EEEEeCCCEEEEEeC--CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 345789999999 76 555566799999874 443 222221 12356889999997 445554433 3
Q ss_pred -CeEEEEECCCC-------cEE-EEccC--CCCceEEEEecCCCCCcEEEEEEc-------------CCcEEEEECCCC-
Q 007757 365 -KNIKYWDTETG-------QVI-RTFST--GKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDMNTK- 419 (590)
Q Consensus 365 -g~I~vWd~~t~-------~~~-~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~-------------dg~I~vwDl~t~- 419 (590)
..|..|+.... +.+ ..+.. .+....+.+.+++ .++++.+. .|+|..++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG---~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG---MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS---CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC---cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 56777877654 111 11221 2344556776654 44444322 256666665432
Q ss_pred --------ceEEEEcccCCceeEEEEeC-CCCEEEEEeCCC---cEEEEECCC--------C--------cEEEEeecCC
Q 007757 420 --------EITQEYDQHLGAVNTITFVD-SNRRFVTSSDDK---SLRVWEFGI--------P--------VVIKYISEPH 471 (590)
Q Consensus 420 --------~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~Dg---~I~iwdl~~--------~--------~~~~~~~~~~ 471 (590)
..+.. .++. ....|+|+| .+..+++-.... .|.+..-.. . .++..+. ..
T Consensus 181 p~~npf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 257 (354)
T 3a9g_A 181 PADNPFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SE 257 (354)
T ss_dssp CTTSSSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCCCCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CC
Confidence 11222 2332 346799999 565555433222 133222110 0 0111110 11
Q ss_pred CCcccEEEEc-------CCCCEEEEEEcCCeEEEEEccCceeecc-cccccCcccccceEEEEEcCCCCEEEEEe
Q 007757 472 MHSMPSISLH-------PNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 472 ~~~i~~i~~s-------p~g~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
......+++. .++.++++....+.|..+++........ ...+.+. ...+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV--FGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT--SCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC--CCCeeEEEECCCCcEEEEEe
Confidence 2346677773 4676666666677888888864321111 1112121 34567899999997766654
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.89 E-value=0.071 Score=62.67 Aligned_cols=238 Identities=11% Similarity=0.096 Sum_probs=139.1
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcE
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
..|.|-|+.+.....+.-..- -+.-.+|..+.|+.-. ..++.|+|+++...+..+.....+. -|.|-+.. .
T Consensus 48 ~~vvIidl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~Vv--fWkWis~~--~ 118 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVT--FWKWISLN--T 118 (1630)
T ss_pred ceEEEEECCCCCCcccccccc----hhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCce--EEEecCCC--e
Confidence 368888885444443322221 2234567666666554 6899999999999888887766544 44444432 2
Q ss_pred EEEEEcCCcEEEEECCC-CceEEEEccc----CCceeEEEEeCCCCEEEEEe-------CCCcEEEEECCCCcEEEEeec
Q 007757 402 LLAGMSDKKIVQWDMNT-KEITQEYDQH----LGAVNTITFVDSNRRFVTSS-------DDKSLRVWEFGIPVVIKYISE 469 (590)
Q Consensus 402 lvsg~~dg~I~vwDl~t-~~~~~~~~~h----~~~V~~i~~~p~~~~l~s~s-------~Dg~I~iwdl~~~~~~~~~~~ 469 (590)
|... .+..|+.|++.. ..++..+..| ...|..-..+++.++++..+ -.|.+.+|....... ....
T Consensus 119 l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~ie 195 (1630)
T 1xi4_A 119 VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIE 195 (1630)
T ss_pred eEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hhhh
Confidence 2222 357899999964 2455555555 45677778888888887544 347788888754422 2222
Q ss_pred CCCCcccEEEEcC---CCCEEEEEEc---CCeEEEEEccCc---eeecccc----cccCcccccceEEEEEcCCCCEEEE
Q 007757 470 PHMHSMPSISLHP---NTNWLAAQSL---DNQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 470 ~~~~~i~~i~~sp---~g~~l~s~s~---dg~I~iwd~~~~---~~~~~~~----~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
+|......+.+.. ....++.+.. .+.++|.++... ......+ .+...........+..|+.-..+..
T Consensus 196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 3333333222221 1223333222 268888887542 1111001 1111112233446788888888999
Q ss_pred EeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcC
Q 007757 537 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 537 gs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
-+.-|.|+++|+.|+.++..-+....+|...+-+.
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~ 310 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE 310 (1630)
T ss_pred EecCceEEEEecccchhhhhccccCCceEEeccCC
Confidence 99999999999999998766554445554444443
No 322
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.76 E-value=0.51 Score=46.75 Aligned_cols=195 Identities=13% Similarity=0.201 Sum_probs=122.3
Q ss_pred EcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC-CcEEEEccCCC
Q 007757 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGK 385 (590)
Q Consensus 307 fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~~~ 385 (590)
.+|. .+.||.-. ..++.|+|+ +....+..+.- ...|.-=.|-.+ +.|+-.+ +..|.-|+++. ..+.+.|..+.
T Consensus 74 MnP~-~~ViALra-g~~LQiFnl-etK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 74 MNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp ECSS-SSEEEEEE-TTEEEEEET-TTTEEEEEEEC-SSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eCCC-ccEEEEec-CCeEEEech-HHhhhhcceec-CCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 5777 67776655 678999999 56666666654 346666666544 4455444 47899999974 34555554422
Q ss_pred ---CceEEEEecCCCCCcEEEEEE------cCCcEEEEECCCCceEEEEcccCCceeEEEEeCC---CCEEEEEeC---C
Q 007757 386 ---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS---NRRFVTSSD---D 450 (590)
Q Consensus 386 ---~~~~~~~~~~~~~~~~lvsg~------~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~---~~~l~s~s~---D 450 (590)
...++.+..+.+..-++++|- -.|.+.+|..+.+ ..+.+.+|.+.-..+.+..+ ...|+.+.. .
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 344666666666555566554 2478889988754 55677777665544433211 112333322 2
Q ss_pred CcEEEEECCCC--------cEEEEeecC---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec
Q 007757 451 KSLRVWEFGIP--------VVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 451 g~I~iwdl~~~--------~~~~~~~~~---~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
+.++|.++..+ +....+..+ ...-..++.+++....+..-+.-|.|++||+.++..+.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 58999998543 111111111 23345678888888899999999999999999987663
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.74 E-value=0.076 Score=52.25 Aligned_cols=186 Identities=12% Similarity=0.109 Sum_probs=96.6
Q ss_pred CCEEEEEeCC----CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC------CeEEEEECCCCcEEEEc
Q 007757 312 GHLILSAGMD----TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIKYWDTETGQVIRTF 381 (590)
Q Consensus 312 g~~L~sgs~D----g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D------g~I~vWd~~t~~~~~~~ 381 (590)
+.+++.|+.+ ..+.+||+. ...-...-..........+..-++.+++.|+.+ ..+.+||+.+.+-...-
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~-~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVV-KDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETT-TTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCCCcceEEEEeCC-CCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 6677777755 568888883 333222111111111111222267777777765 46899999887654432
Q ss_pred cC--CCCceEEEEecCCCCCcEEEEEEc---------CCcEEEEECCCCceEEEEcccCC-ceeEEEEeCCCCEEEEEeC
Q 007757 382 ST--GKIPYVVKLNPDDDKQNILLAGMS---------DKKIVQWDMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 382 ~~--~~~~~~~~~~~~~~~~~~lvsg~~---------dg~I~vwDl~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~ 449 (590)
.. ......+... ++.+++.|+. -..+.+||+.+.+-...-..... .-.++... +++.++.|+.
T Consensus 135 ~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~ 209 (306)
T 3ii7_A 135 SMLTQRCSHGMVEA----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQ 209 (306)
T ss_dssp CCSSCCBSCEEEEE----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCE
T ss_pred CCcCCcceeEEEEE----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCC
Confidence 22 2222222222 2256676654 35588999988753322111111 11223333 5667777764
Q ss_pred C-----CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcC-----CeEEEEEccCc
Q 007757 450 D-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRER 504 (590)
Q Consensus 450 D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 504 (590)
+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.+ +.|.+||+.+.
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 3 4688999877653332211221112222222 56677777744 56788887653
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.72 E-value=0.066 Score=52.88 Aligned_cols=217 Identities=9% Similarity=0.003 Sum_probs=107.4
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCcEEEEcc--CCCCceEEEEecCCCCCcEEEEEEc----C-----CcEEEEECCC
Q 007757 354 DGTKFLTASYD----KNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMS----D-----KKIVQWDMNT 418 (590)
Q Consensus 354 dg~~l~s~s~D----g~I~vWd~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~----d-----g~I~vwDl~t 418 (590)
++.+++.|+.+ ..+.++|..+.+....-. .......+... ++.+++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV----GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE----CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 44555666532 468888988776544321 11112222222 2256777665 2 4688999987
Q ss_pred CceEEEEcccCCc-eeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 419 KEITQEYDQHLGA-VNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 419 ~~~~~~~~~h~~~-V~~i~~~p~~~~l~s~s~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
.+-...-...... -.+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred CeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCC
Confidence 7532221111111 1222222 56677776643 4688899877654332221222222233333 5667777765
Q ss_pred C-----CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE--EecC
Q 007757 493 D-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKCH 560 (590)
Q Consensus 493 d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~d-----g~I~iwd~~t~~~~~~--l~~h 560 (590)
+ +.+.+||+.+..=. ........ ......+.+ ++++++.|+.+ ..+.+||+.+.+-... +...
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~-~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWR-MITAMNTI--RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEE-ECCCCSSC--CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred CCCCcCceEEEEeCCCCeEe-eCCCCCCc--cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 4 45889998664311 11111111 111112223 67777777654 4699999887643221 1111
Q ss_pred CCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 561 EGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 561 ~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
......+.+ ++.+++.||.++
T Consensus 253 r~~~~~~~~---~~~i~v~GG~~~ 273 (308)
T 1zgk_A 253 RSALGITVH---QGRIYVLGGYDG 273 (308)
T ss_dssp CBSCEEEEE---TTEEEEECCBCS
T ss_pred ccceEEEEE---CCEEEEEcCcCC
Confidence 111122222 456777777654
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.57 E-value=0.41 Score=48.38 Aligned_cols=232 Identities=11% Similarity=0.135 Sum_probs=118.8
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEe-------ccCCCceeEEEEecC---CCEEEEE-eC-----
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY-------MGHSKAVRDISFCND---GTKFLTA-SY----- 363 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-------~~h~~~V~~l~fspd---g~~l~s~-s~----- 363 (590)
.....|+|.|+ ++.|+.+...|.|++++. .+.....+ .........|+|+|+ +..|+.+ +.
T Consensus 18 ~~P~~i~~~pd-G~~l~V~e~~G~i~~~~~--~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPD-NHGMLITLRGGELRHWQA--GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECST-TCCEEEEETTTEEEEEET--TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCC-CCEEEEEeCCceEEEEeC--CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 45689999999 772445567899999885 33321111 112345789999995 4444444 32
Q ss_pred --CCeEEEEECCCC--c-----EE-EEcc----CCCCceEEEEecCCCCCcEEEEEEc-------------CCcEEEEEC
Q 007757 364 --DKNIKYWDTETG--Q-----VI-RTFS----TGKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDM 416 (590)
Q Consensus 364 --Dg~I~vWd~~t~--~-----~~-~~~~----~~~~~~~~~~~~~~~~~~~lvsg~~-------------dg~I~vwDl 416 (590)
...|..|++..+ . .+ ..+. ..+....+.|.+++ .++++.+. .|+|.-++.
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG---~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG---YLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS---EEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC---cEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 235666666533 1 11 1121 12334567777754 34444322 246777776
Q ss_pred CCC--------------ceEEEEcccCCceeEEEEeC-CCCEEEEEeC-CCcEEEEECCCCc------------------
Q 007757 417 NTK--------------EITQEYDQHLGAVNTITFVD-SNRRFVTSSD-DKSLRVWEFGIPV------------------ 462 (590)
Q Consensus 417 ~t~--------------~~~~~~~~h~~~V~~i~~~p-~~~~l~s~s~-Dg~I~iwdl~~~~------------------ 462 (590)
... ..+..+ ++ .....++|.| .+.++++-.. ++.=.|.-+..+.
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~-G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSY-GI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEE-CC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCCCCCcCCCCCCccEEEE-cC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 532 111111 22 3467899999 5544443221 1111222111100
Q ss_pred -------------EEEEeecCCCCcccEEEEcC-------CCCEEEEEEcCCeEEEEEccCceeecccccccCcccccce
Q 007757 463 -------------VIKYISEPHMHSMPSISLHP-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522 (590)
Q Consensus 463 -------------~~~~~~~~~~~~i~~i~~sp-------~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 522 (590)
++..+ .+......+.|.. ++.++++....+.|...++...........+.. ....+
T Consensus 250 ~~~~~~~~~~~~~P~~~~--~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~rp 325 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYW--KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTD--RGQRI 325 (353)
T ss_dssp TTCCBSSCTTSCCCSEEE--SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGG--GCCCE
T ss_pred CcccCCCCCCccCCeEEe--CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccC--CCCce
Confidence 00001 1122455677753 466677666778888888765432211111111 12457
Q ss_pred EEEEEcCCCCEEEEEe-CCCcE
Q 007757 523 CQVNFSPDGRFVMSGD-GEGKC 543 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs-~dg~I 543 (590)
..+++.|||.+.++.+ .+|.|
T Consensus 326 ~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 326 RDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEEEECTTSCEEEEECSTTEEE
T ss_pred eEEEECCCCcEEEEEeCCCCEE
Confidence 7899999998766543 34544
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.56 E-value=0.11 Score=51.34 Aligned_cols=213 Identities=10% Similarity=0.016 Sum_probs=104.4
Q ss_pred EEEEEeCCCeEEEEECCCCcEEE-EccCCCCceEEEEecCCCCCcEEEEEEc-----C------CcEEEEECCCCceEEE
Q 007757 357 KFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMS-----D------KKIVQWDMNTKEITQE 424 (590)
Q Consensus 357 ~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~-----d------g~I~vwDl~t~~~~~~ 424 (590)
+++.|+ ..+.+||..+++-.. .+.........+.... ++.+++.|+. . ..+.+||+.+.+-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344454 679999999887543 1111112222222222 2367777773 1 1278899987753221
Q ss_pred EcccCCc-eeEEEEeCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc-C-
Q 007757 425 YDQHLGA-VNTITFVDSNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D- 493 (590)
Q Consensus 425 ~~~h~~~-V~~i~~~p~~~~l~s~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~-d- 493 (590)
-...... -.+++.. ++..++.|+.+ ..+.+||..+..-...-..+....-.+++. .++++++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTT
T ss_pred CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCC
Confidence 1111111 1122222 56667777632 458899987765332221122222223333 35667777765 2
Q ss_pred ----CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEE--ecCCC
Q 007757 494 ----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSCKVFRTL--KCHEG 562 (590)
Q Consensus 494 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg-----~I~iwd~~t~~~~~~l--~~h~~ 562 (590)
+.+.+||+.+..= ......... ......+.+ ++++++.|+.++ .+.+||..+.+-...- .....
T Consensus 161 ~~~~~~~~~yd~~~~~W-~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEW-KELAPMQTA--RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp SCBCCCEEEEETTTTEE-EECCCCSSC--CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CcccceEEEEeCCCCeE-EECCCCCCc--hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 4688999876421 111111111 111111222 667777777544 5888998776433221 11111
Q ss_pred CEEEEEEcCCCCCEEEEEeCC
Q 007757 563 VCIGCEWHPLEQSKVATCGWD 583 (590)
Q Consensus 563 ~V~~v~~sp~~~~~l~s~g~D 583 (590)
....+.+ ++.+++.||.+
T Consensus 236 ~~~~~~~---~~~l~v~GG~~ 253 (315)
T 4asc_A 236 SLSLVSL---VGTLYAIGGFA 253 (315)
T ss_dssp SCEEEEE---TTEEEEEEEEE
T ss_pred ceeEEEE---CCEEEEECCcc
Confidence 1222333 45677778764
No 327
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.40 E-value=1.3 Score=47.05 Aligned_cols=245 Identities=12% Similarity=0.112 Sum_probs=137.8
Q ss_pred EEEEEeCCCcEEEEEccCCCeeEEEeccC-------------------------CCcee--EEEEec---CCCEEEEEeC
Q 007757 314 LILSAGMDTKVKIWDVVNSGKCMRTYMGH-------------------------SKAVR--DISFCN---DGTKFLTASY 363 (590)
Q Consensus 314 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------------------------~~~V~--~l~fsp---dg~~l~s~s~ 363 (590)
.+.||+..|.|+|+-+ .+.+.+..+.-. .+... .+++.. ||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~-PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGV-PSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEECGGGCCEEEEEE-TTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEeecCcCceEEEEec-CCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 4678888899999988 566666554210 01111 234432 6778877763
Q ss_pred -CCeEEEEECCCCcEEEEccCCCC--ceEEEEecCCCCCcEEEEEEc-------CCcE------------EEEECCCCce
Q 007757 364 -DKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS-------DKKI------------VQWDMNTKEI 421 (590)
Q Consensus 364 -Dg~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~-------dg~I------------~vwDl~t~~~ 421 (590)
+..|...++...++-+.+..+.. ...+++... .+..++++++. ||.. ...|..+.+.
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~-p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKV-PHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCS-SBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCccccccccc-CCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence 57888889998888766655443 333444321 23345665543 2221 1123334443
Q ss_pred EEEEcccCCceeEEEEeCCCCEEEEEeCCC---------------cEEEE-------------------------ECCC-
Q 007757 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDK---------------SLRVW-------------------------EFGI- 460 (590)
Q Consensus 422 ~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg---------------~I~iw-------------------------dl~~- 460 (590)
..++.- .+....+...+++.+.++.+.+. .+.++ |.+.
T Consensus 230 ~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~ 308 (638)
T 3sbq_A 230 AFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKK 308 (638)
T ss_dssp EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCB
T ss_pred EEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccc
Confidence 333221 22333344566777777765321 23344 4333
Q ss_pred ---C-cEEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceee------cccccc-cCcccccceEEEEEc
Q 007757 461 ---P-VVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL------NKKKRF-AGHIVAGYACQVNFS 528 (590)
Q Consensus 461 ---~-~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~------~~~~~~-~~~~~~~~v~~v~~s 528 (590)
. .....+ +...+...+.++|+|+++++++ .+.++.++|+...... ...... ......-.....+|.
T Consensus 309 ~~~~~~~~~~i--P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd 386 (638)
T 3sbq_A 309 DGKDSKFTRYV--PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD 386 (638)
T ss_dssp TTBCCSSEEEE--EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC
T ss_pred cccCCceEEEE--eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC
Confidence 1 122222 2234556789999999988876 4688999998742211 111111 111112334568999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC----------eEEEEEecCCCC
Q 007757 529 PDGRFVMSGDGEGKCWFWDWKSC----------KVFRTLKCHEGV 563 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~----------~~~~~l~~h~~~ 563 (590)
++|....+-.-|..|.-|++... ..+..+..|-.+
T Consensus 387 ~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp 431 (638)
T 3sbq_A 387 GRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP 431 (638)
T ss_dssp SSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred CCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC
Confidence 99955566668999999998653 567777777553
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.066 Score=53.84 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=105.1
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEeccC-CCceeEEEEe--c-CCCEEEEE-eCCCeEEEEECCCCcEEEEccCCCC
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-SKAVRDISFC--N-DGTKFLTA-SYDKNIKYWDTETGQVIRTFSTGKI 386 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fs--p-dg~~l~s~-s~Dg~I~vWd~~t~~~~~~~~~~~~ 386 (590)
+.+++.++.||.|.-.|. .+++.+..+... ..++....-. + ++..++.. +.||.|..++..+|.....+.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~-~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDR-RNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEET-TTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEEC-CCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 357899999999999998 688888888654 1222211100 1 22333333 5799999999998866655443211
Q ss_pred ----ceEEEEecCC------CCCcEEEEEEcCCcEEEEECCCCceEEEEcccC--Cc-----eeEEEEe-----CCCCEE
Q 007757 387 ----PYVVKLNPDD------DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL--GA-----VNTITFV-----DSNRRF 444 (590)
Q Consensus 387 ----~~~~~~~~~~------~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~--~~-----V~~i~~~-----p~~~~l 444 (590)
+....-.|-- .....+++|+.+|.+...|+++|+.+..+.... +. ..|.... ..+..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1111111100 023578999999999999999999999986421 11 1111111 123456
Q ss_pred EEEeCCCcEEEEECCCCcE----EEEeecCCCC-cc-cEEEEcCCCCEEEEEEcCCeEEEEEccCceee
Q 007757 445 VTSSDDKSLRVWEFGIPVV----IKYISEPHMH-SM-PSISLHPNTNWLAAQSLDNQILIYSTRERFQL 507 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~~~~----~~~~~~~~~~-~i-~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 507 (590)
+.+..+..+.+.+ +++.. .......... .+ .....+.++.+ ++++.||.|..+|..++..+
T Consensus 169 ~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 6666665555544 22210 0001000000 00 00001123555 45788999999998776654
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.27 E-value=0.22 Score=50.04 Aligned_cols=220 Identities=11% Similarity=0.110 Sum_probs=104.2
Q ss_pred CCCEEEEEeCC-CeEEEEECCC--CcEEEE--cc-CCCCceEEEEecCCCCCcEEEEEEc-C---------CcEEEEECC
Q 007757 354 DGTKFLTASYD-KNIKYWDTET--GQVIRT--FS-TGKIPYVVKLNPDDDKQNILLAGMS-D---------KKIVQWDMN 417 (590)
Q Consensus 354 dg~~l~s~s~D-g~I~vWd~~t--~~~~~~--~~-~~~~~~~~~~~~~~~~~~~lvsg~~-d---------g~I~vwDl~ 417 (590)
++.+++.|+.+ ..+.++|+.+ .+-... +. .......+... ++.+++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI----DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE----TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE----CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 55566666543 4688888864 333222 22 11222222222 1256777765 2 468999998
Q ss_pred CCceEEEEccc-CCceeEEEEeCCCCEEEEEeCC---------------------------------------CcEEEEE
Q 007757 418 TKEITQEYDQH-LGAVNTITFVDSNRRFVTSSDD---------------------------------------KSLRVWE 457 (590)
Q Consensus 418 t~~~~~~~~~h-~~~V~~i~~~p~~~~l~s~s~D---------------------------------------g~I~iwd 457 (590)
+.+-...-... .......+...+++.++.|+.+ ..+.+||
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 87533221111 1111222222467778888754 5788999
Q ss_pred CCCCcEEEEeecCCCCcc-cEEEEcCCCCEEEEEEc------CCeEEEEEc--cCceeecccccccCcccccceEEEEEc
Q 007757 458 FGIPVVIKYISEPHMHSM-PSISLHPNTNWLAAQSL------DNQILIYST--RERFQLNKKKRFAGHIVAGYACQVNFS 528 (590)
Q Consensus 458 l~~~~~~~~~~~~~~~~i-~~i~~sp~g~~l~s~s~------dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~v~~v~~s 528 (590)
..+..-...-..+..... .+++.. ++++++.|+. ...+.+|++ .+. ................. .+..
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-~W~~~~~~~~~~~~~~~--~~~~ 250 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-KWNKLAPVSSPDGVAGG--FAGI 250 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-EEEECCCSSTTTCCBSC--EEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-cEEecCCCCCCcccccc--eEEE
Confidence 877654433222222122 333333 5556666553 345777876 322 11111111111000011 1222
Q ss_pred CCCCEEEEEeCC----------------------CcEEEEeCCCCe--EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 529 PDGRFVMSGDGE----------------------GKCWFWDWKSCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 529 pdg~~l~sgs~d----------------------g~I~iwd~~t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
.++++++.|+.+ ..+.+||+.+.+ .+..+........++.+ ++.+++.||.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~ 327 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETA 327 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECG
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCC
Confidence 356677777632 257889987643 34333322222223333 566888888654
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.25 E-value=1.3 Score=45.63 Aligned_cols=196 Identities=13% Similarity=0.191 Sum_probs=124.4
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC-CcEEEEccCC
Q 007757 306 RFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTG 384 (590)
Q Consensus 306 ~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t-~~~~~~~~~~ 384 (590)
-.+|. .+.||.=. ..++.|+|+ +....+..+.-. ..|.--.|-.+ +.|+..+ +..|.-|+++. ..+++.|..+
T Consensus 72 IMnP~-~~iiALra-g~~lQiFnl-e~K~klks~~~~-e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 72 IMNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EECSS-SSCEEEEE-TTEEEEEET-TTTEEEEEEECS-SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeCCC-CcEEEEec-CCeEEEEch-HHhhhhcceecC-CCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 35777 56666554 678999999 566666666543 45666666644 3455443 47899999974 3455555432
Q ss_pred C---CceEEEEecCCCCCcEEEEEE------cCCcEEEEECCCCceEEEEcccCCceeEEEEeCCC---CEEEEEeC---
Q 007757 385 K---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSN---RRFVTSSD--- 449 (590)
Q Consensus 385 ~---~~~~~~~~~~~~~~~~lvsg~------~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~---~~l~s~s~--- 449 (590)
. ...++.+..+.+..-++++|- -.|.+.+|..+.+ ..+.+.+|.+.-..+.+..+. ..|+.+..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 2 344666666666555555554 2478899998754 456777887666555443221 23444433
Q ss_pred CCcEEEEECCCC--------cEEEEeecC---CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec
Q 007757 450 DKSLRVWEFGIP--------VVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 450 Dg~I~iwdl~~~--------~~~~~~~~~---~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
.+.++|.++..+ +....+..+ ...-..++.+++....+..-+.-|.|.+||+.++..+.
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 278999998543 111111111 13335678888888899999999999999999987663
No 331
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.20 E-value=0.089 Score=53.33 Aligned_cols=156 Identities=9% Similarity=0.062 Sum_probs=87.6
Q ss_pred ceeEEEEeCCCCEEEEE------------eCCCcEEEEECCCCc-EEEEeec-C-----CCCcccEEEEcC--CCC-EEE
Q 007757 431 AVNTITFVDSNRRFVTS------------SDDKSLRVWEFGIPV-VIKYISE-P-----HMHSMPSISLHP--NTN-WLA 488 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~------------s~Dg~I~iwdl~~~~-~~~~~~~-~-----~~~~i~~i~~sp--~g~-~l~ 488 (590)
..-.|...++|..++++ ..+|.|.++|+.... ....+.. . .......|.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566677776555554 268999999987421 1122221 1 123456677765 343 344
Q ss_pred EE-Ec--CCeEEEEEccCc-eeecccccccCcccccceEEEEEcCCCCEEEEEe-----------------CCCcEEEEe
Q 007757 489 AQ-SL--DNQILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-----------------GEGKCWFWD 547 (590)
Q Consensus 489 s~-s~--dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs-----------------~dg~I~iwd 547 (590)
++ .. +..|.+|++... ........+.+. .-.....+.+.++|++.++.. ..|.|+.+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 44 33 467888877543 222223334433 234567899999999888764 135566666
Q ss_pred CCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEeC
Q 007757 548 WKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590 (590)
Q Consensus 548 ~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 590 (590)
.. +.. .+...-...+.++|+|++..+.++-+..+.|..||
T Consensus 210 ~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 210 PN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp TT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence 53 322 22222345689999995444455555567777764
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.04 E-value=0.27 Score=49.40 Aligned_cols=235 Identities=11% Similarity=0.103 Sum_probs=111.5
Q ss_pred CCEEEEEeCC-CcEEEEEccCCCeeEEEeccCC--CceeEEEEecCCCEEEEEeC-C---------CeEEEEECCCCcEE
Q 007757 312 GHLILSAGMD-TKVKIWDVVNSGKCMRTYMGHS--KAVRDISFCNDGTKFLTASY-D---------KNIKYWDTETGQVI 378 (590)
Q Consensus 312 g~~L~sgs~D-g~I~iWd~~~~~~~~~~~~~h~--~~V~~l~fspdg~~l~s~s~-D---------g~I~vWd~~t~~~~ 378 (590)
+.+++.|+.+ ..+.++|+......-..+..-. ......+..-++.+++.|+. + ..+.+||+.+.+-.
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 5676777643 4688888732112222222111 11111112225677777765 2 46889999887654
Q ss_pred EEccCC---CCceEEEEecCCCCCcEEEEEEcC---------------------------------------CcEEEEEC
Q 007757 379 RTFSTG---KIPYVVKLNPDDDKQNILLAGMSD---------------------------------------KKIVQWDM 416 (590)
Q Consensus 379 ~~~~~~---~~~~~~~~~~~~~~~~~lvsg~~d---------------------------------------g~I~vwDl 416 (590)
..-... .....+.. . ++.+++.|+.+ ..+.+||+
T Consensus 100 ~~~~~~p~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 100 KLMSHAPMGMAGHVTFV-H---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp ECSCCCSSCCSSEEEEE-E---TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred ECCCCCCcccccceEEE-E---CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 433222 11222222 2 23677888754 57899999
Q ss_pred CCCceEEEEcccC-Cce-eEEEEeCCCCEEEEEeC------CCcEEEEEC--CCCcEEEEeec-CCCC-cccEEEEcCCC
Q 007757 417 NTKEITQEYDQHL-GAV-NTITFVDSNRRFVTSSD------DKSLRVWEF--GIPVVIKYISE-PHMH-SMPSISLHPNT 484 (590)
Q Consensus 417 ~t~~~~~~~~~h~-~~V-~~i~~~p~~~~l~s~s~------Dg~I~iwdl--~~~~~~~~~~~-~~~~-~i~~i~~sp~g 484 (590)
.+.+-...-.... ... .+++.. +++.++.|+. ...+.+||+ .+..- ..+.. +... .....+...++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W-~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKW-NKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEE-EECCCSSTTTCCBSCEEEEETT
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcE-EecCCCCCCcccccceEEEECC
Confidence 8875333221111 111 233333 5666666653 345777877 33322 22211 1111 11111223356
Q ss_pred CEEEEEEcC----------------------CeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeCCC-
Q 007757 485 NWLAAQSLD----------------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG- 541 (590)
Q Consensus 485 ~~l~s~s~d----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg- 541 (590)
.+++.|+.+ ..+.+||+.+.. ......+.... ..... +..++++++.|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r--~~~~~--~~~~~~i~v~GG~~~~ 328 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGR--AYGVS--LPWNNSLLIIGGETAG 328 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCC--BSSEE--EEETTEEEEEEEECGG
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCc--cccee--EEeCCEEEEEeeeCCC
Confidence 666766632 247788886532 11111111111 11111 223677878887543
Q ss_pred -----cEEEEeCCCCeEEEEE
Q 007757 542 -----KCWFWDWKSCKVFRTL 557 (590)
Q Consensus 542 -----~I~iwd~~t~~~~~~l 557 (590)
.|.++++++++.+...
T Consensus 329 ~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 329 GKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp GCEEEEEEEEEC-CCSCEEEC
T ss_pred CCEeeeEEEEEEcCcEeEeee
Confidence 3666788877765543
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.02 E-value=0.51 Score=48.53 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=93.0
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCC---CCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecc-----
Q 007757 438 VDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH---MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----- 509 (590)
Q Consensus 438 ~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~---~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~----- 509 (590)
+.+|..++.+- ++.||..++......+.+..+. ...+..+..+|+|.+||..+ +..|.|..+..+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 34455555544 3678877776444455554442 33688899999999999975 56788888763221110
Q ss_pred --c--ccccC----cccccceEEEEEcCC---CCEEEEEeCCCcEEEEeCCCC--eEEEEEe---------cCCCCEEEE
Q 007757 510 --K--KRFAG----HIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDWKSC--KVFRTLK---------CHEGVCIGC 567 (590)
Q Consensus 510 --~--~~~~~----~~~~~~v~~v~~spd---g~~l~sgs~dg~I~iwd~~t~--~~~~~l~---------~h~~~V~~v 567 (590)
. +.+.- ......|..+.|+|- +..|++-..|+.|++||+... ++. .++ .....|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 0 01110 112466889999994 668999999999999999752 222 232 223568899
Q ss_pred EEcCCCCCEEEEEe--CCCcEE
Q 007757 568 EWHPLEQSKVATCG--WDGLIK 587 (590)
Q Consensus 568 ~~sp~~~~~l~s~g--~DG~I~ 587 (590)
+|.+ ++-.|.... ..|.|+
T Consensus 186 ~Fg~-~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 186 EFSK-DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EECT-TSSCEEEEECTTSCEEE
T ss_pred EEcC-CCcEEEEEecCCCCCEE
Confidence 9998 565565544 677775
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.99 E-value=1.5 Score=44.04 Aligned_cols=240 Identities=10% Similarity=0.024 Sum_probs=120.4
Q ss_pred CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEcc-------C-CCCceEEEEecCCC-CCcEEEEEEc-------
Q 007757 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-------T-GKIPYVVKLNPDDD-KQNILLAGMS------- 407 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~-------~-~~~~~~~~~~~~~~-~~~~lvsg~~------- 407 (590)
.....|+|.|+|+.|+.+...|.|++++.. +.....+. . ......+.+.|+-. ++.+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456899999999845556678999999853 33211111 1 12234566666310 2234444332
Q ss_pred CCcEEEEECCCC--ce--EEE-Ecc------cCCceeEEEEeCCCCEEEEEeCC-------------CcEEEEECCCCc-
Q 007757 408 DKKIVQWDMNTK--EI--TQE-YDQ------HLGAVNTITFVDSNRRFVTSSDD-------------KSLRVWEFGIPV- 462 (590)
Q Consensus 408 dg~I~vwDl~t~--~~--~~~-~~~------h~~~V~~i~~~p~~~~l~s~s~D-------------g~I~iwdl~~~~- 462 (590)
...|..|++... .+ ... +.. .......|.|.|+|.++++.++. |.|.-++.....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235776766533 11 111 111 11124679999999766665442 356556654220
Q ss_pred -----------EEEEeecCCCCcccEEEEcCCCCEEEEEEcCC--eEEEEEccCceee----------------c-----
Q 007757 463 -----------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQL----------------N----- 508 (590)
Q Consensus 463 -----------~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~----------------~----- 508 (590)
....+...+ .....++|+|....|.++.... .=.|.-+..+... .
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111111122 3467899999433444443321 1122111111000 0
Q ss_pred ccccccCc----ccccceEEEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeEEEEEe---cCCCCEEEEEEcCCCC
Q 007757 509 KKKRFAGH----IVAGYACQVNFSP-------DGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQ 574 (590)
Q Consensus 509 ~~~~~~~~----~~~~~v~~v~~sp-------dg~~l~sgs~dg~I~iwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~ 574 (590)
....+... ......+.+.|.. +|.++++.-..+.|...++..++.+.... .....+..+++.| ++
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DG 334 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TS
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CC
Confidence 00000000 0012355677753 47777777778888888887665443322 2235789999999 55
Q ss_pred CEEEEEe-CCCcE
Q 007757 575 SKVATCG-WDGLI 586 (590)
Q Consensus 575 ~~l~s~g-~DG~I 586 (590)
.++++.. .+|.|
T Consensus 335 ~lyv~td~~~g~I 347 (353)
T 2g8s_A 335 YLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEECSTTEEE
T ss_pred cEEEEEeCCCCEE
Confidence 5555433 45655
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.85 E-value=0.31 Score=50.15 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=87.6
Q ss_pred CcEEEEECCCCceEEEEccc----CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC------------cEEEEeecC--
Q 007757 409 KKIVQWDMNTKEITQEYDQH----LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP------------VVIKYISEP-- 470 (590)
Q Consensus 409 g~I~vwDl~t~~~~~~~~~h----~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~------------~~~~~~~~~-- 470 (590)
+.||.-++.....-+.+... ...|..+..+|+|.+|+..+. ..|.|..+..+ ...+.+...
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 56666666543333333322 236888999999999988864 57888887521 112222211
Q ss_pred ---CCCcccEEEEcCC---CCEEEEEEcCCeEEEEEccCceeecc-cc----cccCcccccceEEEEEcCCCCEEEEEe-
Q 007757 471 ---HMHSMPSISLHPN---TNWLAAQSLDNQILIYSTRERFQLNK-KK----RFAGHIVAGYACQVNFSPDGRFVMSGD- 538 (590)
Q Consensus 471 ---~~~~i~~i~~sp~---g~~l~s~s~dg~I~iwd~~~~~~~~~-~~----~~~~~~~~~~v~~v~~spdg~~l~sgs- 538 (590)
...+|..+.|||- +..|++-..|+.|++||+........ +. .+........+.+++|..+|-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 2467999999995 56899999999999999975321111 11 111111124578899999887777654
Q ss_pred -CCCcEEEE
Q 007757 539 -GEGKCWFW 546 (590)
Q Consensus 539 -~dg~I~iw 546 (590)
..|.|+-.
T Consensus 200 t~~GDIYAl 208 (452)
T 3pbp_A 200 TEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEE
T ss_pred CCCCCEEEE
Confidence 78888755
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.63 E-value=1.9 Score=42.39 Aligned_cols=208 Identities=6% Similarity=0.024 Sum_probs=113.4
Q ss_pred CCEEEEEe-C-CCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCC--------------CeEEEEECCCC
Q 007757 312 GHLILSAG-M-DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD--------------KNIKYWDTETG 375 (590)
Q Consensus 312 g~~L~sgs-~-Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~D--------------g~I~vWd~~t~ 375 (590)
+..|+-.. . ++.|...+. ++.....+... .+-.++++|.+|+-+... ..|+..++..+
T Consensus 25 g~~iy~~n~~d~~~ly~~~~--dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 25 DGEVFFSNTNDNGRLYAMNI--DGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp TTEEEEEEGGGTTEEEEEET--TSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred CCEEEEEeCCCCceEEEEcC--CCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 44554443 2 344444443 55444444332 234568889988877653 46888888776
Q ss_pred cEEEEccCCCCceEEEEecCCCCCcEEEEE---EcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeC-CC
Q 007757 376 QVIRTFSTGKIPYVVKLNPDDDKQNILLAG---MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD-DK 451 (590)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg---~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~-Dg 451 (590)
+....... . ...+.+.+. .+..+- .....|+..++..... ..+..+.. ..++++++.|+-++. ..
T Consensus 99 ~~~~l~~~--~--~~~~s~~g~--~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 99 GSTVLDPD--P--CIYASLIGN--YIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCEEEECS--C--EEEEEEETT--EEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred cceEeecC--C--ccEEEEeCC--EEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 54332221 1 224444332 344443 2455677777765443 33333322 345667888877665 67
Q ss_pred cEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC--eEEEEEccCceeecccccccCcccccceEEEEEcC
Q 007757 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 529 (590)
Q Consensus 452 ~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 529 (590)
.|++.++....... +.. . .. ...++|++.+|+-....+ .|..-++....... +.. ..+ ..|+|
T Consensus 168 ~Iy~~~l~g~~~~~-l~~-~--~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~----Lt~----~~~--~~~~~ 232 (302)
T 3s25_A 168 QLYRYDTASQSEAL-FYD-C--NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV----LTE----ANI--EHYNV 232 (302)
T ss_dssp CEEEEETTTTEEEE-EEC-S--CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE----CSC----SCE--EEEEE
T ss_pred eEEEEECCCCCEEE-EeC-C--Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE----EeC----CCc--ceEEE
Confidence 88888887655433 322 1 11 234669999888876543 56666665443221 111 111 34788
Q ss_pred CCCEEEEEe--CCCcEEEEeCCCC
Q 007757 530 DGRFVMSGD--GEGKCWFWDWKSC 551 (590)
Q Consensus 530 dg~~l~sgs--~dg~I~iwd~~t~ 551 (590)
++.+|+-++ ..+.|..-++...
T Consensus 233 ~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 233 YGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCEEEEEECCCCcEEEEEECCCC
Confidence 888887653 2456777776543
No 337
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.38 E-value=1.9 Score=45.15 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=61.6
Q ss_pred CCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE--EEeecC-----CCCcccEEEEcCC---CCEEEEEEc------
Q 007757 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI--KYISEP-----HMHSMPSISLHPN---TNWLAAQSL------ 492 (590)
Q Consensus 429 ~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~--~~~~~~-----~~~~i~~i~~sp~---g~~l~s~s~------ 492 (590)
......|+|.|+|+++++-...+.|++++...+... ..+... ....+..|+|+|+ +.+|.++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 445679999999987777655457888876544332 222211 2345668999995 555555443
Q ss_pred -------CCeEEEEEccCce-ee---c-ccccccCcccccceEEEEEcCCCCEEEEEe
Q 007757 493 -------DNQILIYSTRERF-QL---N-KKKRFAGHIVAGYACQVNFSPDGRFVMSGD 538 (590)
Q Consensus 493 -------dg~I~iwd~~~~~-~~---~-~~~~~~~~~~~~~v~~v~~spdg~~l~sgs 538 (590)
...|.-|+..... .+ . .+..+... .......|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence 2356666553210 00 0 11111111 123456899999998777644
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.13 E-value=1.1 Score=44.05 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=74.8
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCcEEEEccCCCC--ceEEEEecCCCCCcEEEEEEc------CCcEEEEECCC
Q 007757 354 DGTKFLTASYD-------KNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNT 418 (590)
Q Consensus 354 dg~~l~s~s~D-------g~I~vWd~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvsg~~------dg~I~vwDl~t 418 (590)
++..++.|+.+ ..+.+||+.+.+-...-..... ...+.. . ++.+++.|+. -..+.+||+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H---NGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E---TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E---CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 66777777764 3588889988765543222211 112222 2 2356777764 24699999988
Q ss_pred CceEEEEcccCC-ceeEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 419 KEITQEYDQHLG-AVNTITFVDSNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 419 ~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~D-----g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
.+-...-..... .-.+++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++. -++.+++.|+.
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~ 262 (318)
T 2woz_A 185 GDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGF 262 (318)
T ss_dssp TEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred CEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCe
Confidence 753322111111 11223333 56777777643 347788987765433221111111222332 24566666654
Q ss_pred C--------------CeEEEEEccC
Q 007757 493 D--------------NQILIYSTRE 503 (590)
Q Consensus 493 d--------------g~I~iwd~~~ 503 (590)
+ ..|.+||+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 263 AMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CCBC----CCBCCBCCCEEEEETTT
T ss_pred eccCCCCceeccceeeeEEEEeCCC
Confidence 3 3467777765
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.12 E-value=2.1 Score=39.96 Aligned_cols=177 Identities=9% Similarity=-0.076 Sum_probs=93.2
Q ss_pred cEEEEEEcCCcEEEEECCCCc------eEEEEcc-cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc------EEEE
Q 007757 400 NILLAGMSDKKIVQWDMNTKE------ITQEYDQ-HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV------VIKY 466 (590)
Q Consensus 400 ~~lvsg~~dg~I~vwDl~t~~------~~~~~~~-h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~------~~~~ 466 (590)
.+|++...| +|+.=-..++. ....+-. --..+..++|+|++.+.++ .+|.|+-.+..+.. .-..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 455566666 66665554443 1222211 1347889999998886666 66766665543311 1122
Q ss_pred eecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccc--cccCcccccceEEEEEcCCCCEEEEEeCCCcEE
Q 007757 467 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK--RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 544 (590)
Q Consensus 467 ~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~ 544 (590)
+-...-....++.|.|+|.+.++ .||.|+-++..+.....-.. ..-+...-..+..|.|.|+|.+.++. +|.++
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 22112222578999999988777 56988877643211111000 00000011345789999999877766 77765
Q ss_pred EEeCCCCe------EEEEEe-cCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 007757 545 FWDWKSCK------VFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 545 iwd~~t~~------~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I 586 (590)
-+...+.. ....+- ..-..-.-+.|.+ ++.+.+.. +|.|
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~-~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS-VGTLFGVQ--GGKF 203 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT-TSCEEEEE--TTEE
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECC-CCcEEEEe--CCeE
Confidence 44433211 111111 2222344566887 55444433 6654
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.66 E-value=1.6 Score=43.85 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=84.8
Q ss_pred EEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE--Eee---cCCCCcccEEEEcCC---CCEEEEE-E--c
Q 007757 424 EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIK--YIS---EPHMHSMPSISLHPN---TNWLAAQ-S--L 492 (590)
Q Consensus 424 ~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~--~~~---~~~~~~i~~i~~sp~---g~~l~s~-s--~ 492 (590)
.+-........|+|.|+++.|++--..|.|++++........ .+. .........|+++|+ ..+|.+. + .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 343445667899999999877777668999999865444322 111 112445788999995 4455443 2 3
Q ss_pred CCeEEEEEccCce----eecc----cccccCcccccceEEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCC
Q 007757 493 DNQILIYSTRERF----QLNK----KKRFAGHIVAGYACQVNFSPDGRFVMSGDG-------------EGKCWFWDWKSC 551 (590)
Q Consensus 493 dg~I~iwd~~~~~----~~~~----~~~~~~~~~~~~v~~v~~spdg~~l~sgs~-------------dg~I~iwd~~t~ 551 (590)
++.|.-|.+.... .+.. +..+... .......|.|.|||.+.++.+. .|.|.-.+....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCC-SSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCC-CCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 4566667665411 1100 1111110 1122346999999987776432 355555554422
Q ss_pred ---------eEEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007757 552 ---------KVFRTLKCHEGVCIGCEWHPLEQSKVAT 579 (590)
Q Consensus 552 ---------~~~~~l~~h~~~V~~v~~sp~~~~~l~s 579 (590)
..+. -.+|.. ...++|+| ++.++++
T Consensus 185 ip~~nPf~~~~i~-a~G~RN-p~Gla~dp-~G~L~~~ 218 (347)
T 3das_A 185 PAPGNPFPGSPVY-SYGHRN-VQGLAWDD-KQRLFAS 218 (347)
T ss_dssp BCTTCSSTTCCEE-EBCCSB-CCEEEECT-TCCEEEE
T ss_pred ccCCCCCCCCeEE-eeCCCC-cceEEECC-CCCEEEE
Confidence 1111 124544 46899999 5554443
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.14 E-value=1.5 Score=48.64 Aligned_cols=198 Identities=10% Similarity=0.088 Sum_probs=105.0
Q ss_pred cCCCEEEEEeCC----CeEEEEECCCCcEEEEc-c-------CCCCceEEEEecCCCCCcEEEEEEcC------CcEEEE
Q 007757 353 NDGTKFLTASYD----KNIKYWDTETGQVIRTF-S-------TGKIPYVVKLNPDDDKQNILLAGMSD------KKIVQW 414 (590)
Q Consensus 353 pdg~~l~s~s~D----g~I~vWd~~t~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~lvsg~~d------g~I~vw 414 (590)
.++..++.|+.+ ..+.+||..+++....- . .......+..... ++.+++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEEE
Confidence 456777777753 46888998887654433 1 1122223333321 22577777754 358899
Q ss_pred ECCCCceEEEEcccCC-ceeEEEEeCCCCEEEEEeCCC--cEEEEECCCCcEEEEee---cC-CCCcccEEEEcCC-CCE
Q 007757 415 DMNTKEITQEYDQHLG-AVNTITFVDSNRRFVTSSDDK--SLRVWEFGIPVVIKYIS---EP-HMHSMPSISLHPN-TNW 486 (590)
Q Consensus 415 Dl~t~~~~~~~~~h~~-~V~~i~~~p~~~~l~s~s~Dg--~I~iwdl~~~~~~~~~~---~~-~~~~i~~i~~sp~-g~~ 486 (590)
|+.+.+-...-..... .-.+++...++..++.|+.++ .+.+||..+..-..... .+ ......++.+..+ +.+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 9988643222111111 122333334788888887654 68999988765433221 01 1122233555555 667
Q ss_pred EEEEEc--C-----CeEEEEEccCcee-----ecccccccCcccccceEEEEEcCCCCEEEEEeC--------CCcEEEE
Q 007757 487 LAAQSL--D-----NQILIYSTRERFQ-----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--------EGKCWFW 546 (590)
Q Consensus 487 l~s~s~--d-----g~I~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~--------dg~I~iw 546 (590)
++.|+. + +.+.+||+.+..- ........ . ....-..++...++++++.|+. ...|.+|
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~-~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-L-FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-G-GCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-C-CCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 777765 2 4688999876541 11111100 0 0111112233333677777763 3469999
Q ss_pred eCCCCeEE
Q 007757 547 DWKSCKVF 554 (590)
Q Consensus 547 d~~t~~~~ 554 (590)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99876543
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.02 E-value=1.9 Score=47.86 Aligned_cols=150 Identities=15% Similarity=0.258 Sum_probs=83.3
Q ss_pred cEEEEEEcC----CcEEEEECCCCceEEEE-c------ccCCceeEEEEeC-CCCEEEEEeCC------CcEEEEECCCC
Q 007757 400 NILLAGMSD----KKIVQWDMNTKEITQEY-D------QHLGAVNTITFVD-SNRRFVTSSDD------KSLRVWEFGIP 461 (590)
Q Consensus 400 ~~lvsg~~d----g~I~vwDl~t~~~~~~~-~------~h~~~V~~i~~~p-~~~~l~s~s~D------g~I~iwdl~~~ 461 (590)
.+++.|+.+ ..+.+||+.+++-...- . .....-.+++..+ ++..++.|+.+ ..+.+||..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 577777643 46889999887644332 1 1111223444554 67777777643 35788998776
Q ss_pred cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCC--eEEEEEccCceeeccccc---ccCcccccceEEEEEcCC-CCEEE
Q 007757 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKR---FAGHIVAGYACQVNFSPD-GRFVM 535 (590)
Q Consensus 462 ~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg--~I~iwd~~~~~~~~~~~~---~~~~~~~~~v~~v~~spd-g~~l~ 535 (590)
.-...-..+....-.+++...++.+++.|+.++ .+.+||..+.. ...... .... ......+.+..+ +++++
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~--r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEFFQN--SLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGGGGS--CCBSCEEEEETTTTEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCCCCc--ccceeEEEEeCCCCEEEE
Confidence 443322112222233444434788888887654 68999987643 111111 1111 111222455555 66777
Q ss_pred EEeC--C-----CcEEEEeCCCCe
Q 007757 536 SGDG--E-----GKCWFWDWKSCK 552 (590)
Q Consensus 536 sgs~--d-----g~I~iwd~~t~~ 552 (590)
.|+. + ..+.+||+.+..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ECCcCCCCCeeeCcEEEEEccCCc
Confidence 7764 2 458999988766
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.99 E-value=3 Score=38.89 Aligned_cols=142 Identities=8% Similarity=0.047 Sum_probs=76.6
Q ss_pred CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEE------EEccC-C-CCceEEEEecCCCCCcEEEEEEcCCcEEEEE
Q 007757 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI------RTFST-G-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~------~~~~~-~-~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwD 415 (590)
..+.+++|+|+|.+.++ .+|.+.-.+..+.... ..+-. + ..-..+.+.+++ .+.++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G---~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG---YLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS---CEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC---CEEEe--CCCEEEEeC
Confidence 47889999999986666 6787666665442211 11111 0 011234444433 34444 679998887
Q ss_pred CCCCce-------EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc------EEEEeecCCCCcccEEEEcC
Q 007757 416 MNTKEI-------TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV------VIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 416 l~t~~~-------~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~------~~~~~~~~~~~~i~~i~~sp 482 (590)
..+... ...-..--..+..|.+.|+|.+.++. |+.++-+...... ....+....-+..+.+.|.+
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 643211 11111122467899999999877777 6765433221111 11122212333445567888
Q ss_pred CCCEEEEEEcCCeE
Q 007757 483 NTNWLAAQSLDNQI 496 (590)
Q Consensus 483 ~g~~l~s~s~dg~I 496 (590)
++.+.++. ++.|
T Consensus 192 ~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 192 VGTLFGVQ--GGKF 203 (236)
T ss_dssp TSCEEEEE--TTEE
T ss_pred CCcEEEEe--CCeE
Confidence 88777776 6643
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.96 E-value=2.1 Score=50.69 Aligned_cols=195 Identities=13% Similarity=0.216 Sum_probs=112.7
Q ss_pred EcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEccCCC
Q 007757 307 FFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFSTGK 385 (590)
Q Consensus 307 fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~~~~~~~~~~ 385 (590)
.+|. .+.|+.=. ..++.|+|+ .....+..+.- ...|.--.|-... .|+..+ +..|.-|++... .+++.|..+.
T Consensus 73 MnP~-~~iiALra-g~~lQiFnl-~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred cCCC-cceEEEec-CCeEEEeeh-HHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 5666 55555543 678999999 45555555443 3356555665443 444443 478999999642 3333333221
Q ss_pred ---CceEEEEecCCCCCcEEEEEE------cCCcEEEEECCCCceEEEEcccCCceeEEEEeC--C-CCEEEEEe---CC
Q 007757 386 ---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD--S-NRRFVTSS---DD 450 (590)
Q Consensus 386 ---~~~~~~~~~~~~~~~~lvsg~------~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p--~-~~~l~s~s---~D 450 (590)
...++....+.+..-++++|- -.|.+.+|....+ ..+.+.+|.+....+.... . ...|+.+. ..
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 233555555555545555554 3588889988654 3455666766554444431 1 12222222 13
Q ss_pred CcEEEEECCCC-----cE----EEEeecC--CCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeec
Q 007757 451 KSLRVWEFGIP-----VV----IKYISEP--HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508 (590)
Q Consensus 451 g~I~iwdl~~~-----~~----~~~~~~~--~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 508 (590)
+.++|.++..+ .. +.....+ ...-..++.+++....+...+.-|.|.+||+.++..+.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 68899888543 10 0011111 12234567788888888899999999999999886653
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.57 E-value=8 Score=40.24 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=60.3
Q ss_pred CCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE--EccC-------CCCceEEEEecCCCCCcEEEEEEc------
Q 007757 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFST-------GKIPYVVKLNPDDDKQNILLAGMS------ 407 (590)
Q Consensus 343 ~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~lvsg~~------ 407 (590)
-...+.|+|.|+|+++++-...+.|++++..++.... .+.. .....-+++.|+-.....|.+...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999876665444579988876565432 2221 122235677764222234444432
Q ss_pred -------CCcEEEEECCCC-------ceEE-EEcc-cCCceeEEEEeCCCCEEEEEeC
Q 007757 408 -------DKKIVQWDMNTK-------EITQ-EYDQ-HLGAVNTITFVDSNRRFVTSSD 449 (590)
Q Consensus 408 -------dg~I~vwDl~t~-------~~~~-~~~~-h~~~V~~i~~~p~~~~l~s~s~ 449 (590)
...|.-|++... +.+. .+.. .......|.|.|+|.++++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665332 1111 1221 1234688999999988887664
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.15 E-value=11 Score=38.05 Aligned_cols=265 Identities=10% Similarity=0.044 Sum_probs=119.9
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCC--cEEEEEccCCCeeEEEecc--------------CCCceeEEEEec-C-CCEEEE
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDT--KVKIWDVVNSGKCMRTYMG--------------HSKAVRDISFCN-D-GTKFLT 360 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg--~I~iWd~~~~~~~~~~~~~--------------h~~~V~~l~fsp-d-g~~l~s 360 (590)
...|.+|++.|.+...|..++..| -..||-....+..-..+.. +...|.+|++.| + ...|+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 356999999983234444444444 0123333233332222211 113577899987 2 456666
Q ss_pred EeCCCeEEEEECCCCcEEEEccC--------------------CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc
Q 007757 361 ASYDKNIKYWDTETGQVIRTFST--------------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 420 (590)
Q Consensus 361 ~s~Dg~I~vWd~~t~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~ 420 (590)
++..+.|...+ ..++.-..+.. ......+.+.+.. ...++++...+.|...+- .++
T Consensus 134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~--~~~l~vg~~~ggl~~s~D-gG~ 209 (394)
T 3b7f_A 134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRD--PKHLYIGMSSGGVFESTD-AGT 209 (394)
T ss_dssp EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTC--TTCEEEEEETBEEEEESS-TTS
T ss_pred EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCC--CCEEEEEECCCCEEEECC-CCC
Confidence 66666555443 22222222210 0112234444322 233555554555544322 222
Q ss_pred eEEEEcc-----c--------CCceeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecC-CC---CcccEEEEcC
Q 007757 421 ITQEYDQ-----H--------LGAVNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEP-HM---HSMPSISLHP 482 (590)
Q Consensus 421 ~~~~~~~-----h--------~~~V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~-~~---~~i~~i~~sp 482 (590)
....+.. + ...+.+|.+.|. ...|+.+...+ |...+- .+.....+... .. ..+.++.++|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 2222211 0 124788999886 35666666544 444432 23333333211 11 2345677876
Q ss_pred C-CCEEEEEEc-----------CCeEEEEEccCc-eeecccc-cccCcc--cccceEEEEEcCC-CCEEEEEeCCCcEEE
Q 007757 483 N-TNWLAAQSL-----------DNQILIYSTRER-FQLNKKK-RFAGHI--VAGYACQVNFSPD-GRFVMSGDGEGKCWF 545 (590)
Q Consensus 483 ~-g~~l~s~s~-----------dg~I~iwd~~~~-~~~~~~~-~~~~~~--~~~~v~~v~~spd-g~~l~sgs~dg~I~i 545 (590)
. ...|.++.. ++...+|...+. ....... .+.... .......++++|. ...|+.++..+.|+.
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 3 344444432 233455544432 2221111 111100 0011134778874 345666766666654
Q ss_pred EeCCCCeEEEEEecCCCCEEEEEEc
Q 007757 546 WDWKSCKVFRTLKCHEGVCIGCEWH 570 (590)
Q Consensus 546 wd~~t~~~~~~l~~h~~~V~~v~~s 570 (590)
-. ..++....+..+-..+.++.|.
T Consensus 368 S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 368 SA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp ES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EC-CCCCCceEcccCCCCeeEEEEe
Confidence 33 4455555555555567787774
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.01 E-value=11 Score=37.71 Aligned_cols=239 Identities=11% Similarity=0.075 Sum_probs=121.8
Q ss_pred EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE--Ecc-----CCCCceEEEEecCCC-CCcEEEEE--Ec
Q 007757 338 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFS-----TGKIPYVVKLNPDDD-KQNILLAG--MS 407 (590)
Q Consensus 338 ~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~--~~~-----~~~~~~~~~~~~~~~-~~~~lvsg--~~ 407 (590)
.+...-..-+.|+|.|+|++|++--..|.|++++..+++... .+. ......-+++.|+-. ++.+.++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 333444567899999999877666558999999876665422 221 122345667766411 12233322 24
Q ss_pred CCcEEEEECCCC----------ceE-EEEcc-cCCceeEEEEeCCCCEEEEEeC-------------CCcEEEEECCCCc
Q 007757 408 DKKIVQWDMNTK----------EIT-QEYDQ-HLGAVNTITFVDSNRRFVTSSD-------------DKSLRVWEFGIPV 462 (590)
Q Consensus 408 dg~I~vwDl~t~----------~~~-~~~~~-h~~~V~~i~~~p~~~~l~s~s~-------------Dg~I~iwdl~~~~ 462 (590)
++.|.-|.+..+ +.+ ..+.. .......|.|.|+|.++++.++ .|.|.-.+.....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 556766765541 111 12221 1123467999999988777653 2444444443210
Q ss_pred -------EEEEeecCCCCcccEEEEcCCCCEEEEEE-cCCeEEEEEccCceee---------------cccccccCcccc
Q 007757 463 -------VIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL---------------NKKKRFAGHIVA 519 (590)
Q Consensus 463 -------~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~---------------~~~~~~~~~~~~ 519 (590)
....+...+ .....++|+|++.++++-. .++.-.|.-+..+... .....+..+ .
T Consensus 186 p~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~ 262 (347)
T 3das_A 186 APGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD--E 262 (347)
T ss_dssp CTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT--T
T ss_pred cCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC--C
Confidence 011222223 3467899999877655432 2222222222221110 000001000 0
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEecCCCCEEEEEEcCCCCCEEEEEe
Q 007757 520 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV----FRTLKCHEGVCIGCEWHPLEQSKVATCG 581 (590)
Q Consensus 520 ~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~----~~~l~~h~~~V~~v~~sp~~~~~l~s~g 581 (590)
...+.++|. +|.+++..-..+.|....+..... ...+....+.+.+|+..| ++.++++.+
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 123456665 355565555666777777655432 222333346799999999 555555543
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.06 E-value=3.8 Score=39.70 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=104.6
Q ss_pred CceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceE
Q 007757 344 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422 (590)
Q Consensus 344 ~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~ 422 (590)
..|..|+.... +.+.-. ||.|..|-....-.+. .......+..+..-. .+.++. . ||.|+.|-....-.+
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~----~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN----YHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS----SEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC----CEEEEE-E-CCEEEEeeCCCCCCC
Confidence 35777776543 333335 8999999765321111 111111222222221 133444 4 899999976542111
Q ss_pred EEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEcc
Q 007757 423 QEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502 (590)
Q Consensus 423 ~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 502 (590)
-.-..-...|..|+.... ..+.-. +|.|+.|-......+. +.......|..++.-. .+.++-. +|.|+.|-..
T Consensus 95 g~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 95 TVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDN 167 (282)
T ss_dssp CCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECC
T ss_pred CCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCC
Confidence 111111346777776643 333334 8999999764321110 1111223455554432 3333334 7999999765
Q ss_pred CceeecccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCCCEEEEEEcCCCCCEEEEEeC
Q 007757 503 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
....+..... ....+..++...... ++. .+|.|+.|-....-.+..-......|..++... . ..++..
T Consensus 168 ~~gqlg~p~~-----~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~-~-h~~al~-- 235 (282)
T 3qhy_B 168 YFGQTTVPAE-----AQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGE-W-YSLALK-- 235 (282)
T ss_dssp TTSTTSCCGG-----GGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECS-S-CEEEEE--
T ss_pred CCCCCCCcee-----cCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCC-C-EEEEEE--
Confidence 4333221111 123455565544332 333 489999997644211111011123466666543 2 223333
Q ss_pred CCcEEEe
Q 007757 583 DGLIKYW 589 (590)
Q Consensus 583 DG~I~iW 589 (590)
||.|..|
T Consensus 236 ~g~v~~w 242 (282)
T 3qhy_B 236 NGKVIAW 242 (282)
T ss_dssp TTEEEEE
T ss_pred CCEEEEe
Confidence 8888888
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.41 E-value=32 Score=34.44 Aligned_cols=270 Identities=11% Similarity=0.001 Sum_probs=119.2
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEEEe--ccCCCceeEEEEec-CCCEEEEEeCCC----eEEEEECCCCcEEEEccCC
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMRTY--MGHSKAVRDISFCN-DGTKFLTASYDK----NIKYWDTETGQVIRTFSTG 384 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fsp-dg~~l~s~s~Dg----~I~vWd~~t~~~~~~~~~~ 384 (590)
...|+.|+..| +.+++....+.....+ ......|.+|++.| +...|..++..| .|... ...++.-..+...
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 34677777777 4445432222222221 12345799999998 334455555444 34332 2333322222111
Q ss_pred -------------CCceEEEEecCCCC-CcEEEEEEcCCcEEEEECCCCceEEEEcc-------------------cCCc
Q 007757 385 -------------KIPYVVKLNPDDDK-QNILLAGMSDKKIVQWDMNTKEITQEYDQ-------------------HLGA 431 (590)
Q Consensus 385 -------------~~~~~~~~~~~~~~-~~~lvsg~~dg~I~vwDl~t~~~~~~~~~-------------------h~~~ 431 (590)
....+..+..++.+ ...+.++...+.|...+- .++....+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 00123233333211 234666666666655432 2222222211 1235
Q ss_pred eeEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeecCC------------CCcccEEEEcCC-CCEEEEEEcCCeEE
Q 007757 432 VNTITFVDS-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPH------------MHSMPSISLHPN-TNWLAAQSLDNQIL 497 (590)
Q Consensus 432 V~~i~~~p~-~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~------------~~~i~~i~~sp~-g~~l~s~s~dg~I~ 497 (590)
+.+|.+.|. ...|+.+..++.|...+ ..+.....+.... ...+.+|.++|. ...|+++...+ |.
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~ 256 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY 256 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence 788998873 34444444344444332 2222222221100 124788999986 35666666444 54
Q ss_pred EEEccCceeeccccc-ccCcccccceEEEEEcC-CCCEEEEEeC-----------CCcEEEEeCCC-CeEEEEEec-CCC
Q 007757 498 IYSTRERFQLNKKKR-FAGHIVAGYACQVNFSP-DGRFVMSGDG-----------EGKCWFWDWKS-CKVFRTLKC-HEG 562 (590)
Q Consensus 498 iwd~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp-dg~~l~sgs~-----------dg~I~iwd~~t-~~~~~~l~~-h~~ 562 (590)
..+-. +........ +... ....+..+.++| +...|+++.. ++...||.... ++....+.. -..
T Consensus 257 ~s~D~-G~tW~~~~~~l~~~-~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~ 334 (394)
T 3b7f_A 257 RMDRR-EGVWKRIGDAMPRE-VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT 334 (394)
T ss_dssp EEETT-TTEEECGGGGSCTT-TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred EeCCC-CCcceECCCCCCCC-CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence 44322 222211111 1110 012345678876 3334444421 23344554433 333333321 110
Q ss_pred ------C-EEEEEEcCCCCCEEEEEeCCCcEEE
Q 007757 563 ------V-CIGCEWHPLEQSKVATCGWDGLIKY 588 (590)
Q Consensus 563 ------~-V~~v~~sp~~~~~l~s~g~DG~I~i 588 (590)
. ...++++|.+...|+.++.++.|..
T Consensus 335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred ccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 1 1357888855555666766666543
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.40 E-value=27 Score=33.52 Aligned_cols=238 Identities=13% Similarity=0.053 Sum_probs=115.8
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEE
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIR 379 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~~~~ 379 (590)
.|..|+.-.. +.++. . ||.|..|-....+++-.. ......|..|+....... +. . ||.|..|-.... ++-.
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~hs~-~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYHSL-AL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSEEE-EE-E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCEEE-EE-E-CCEEEEeeCCCCCCCCC
Confidence 4677776533 44444 5 899999976433332111 112235777776544322 22 4 899999976532 2110
Q ss_pred EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECC
Q 007757 380 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459 (590)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~ 459 (590)
.......+..+..-. ...++-. +|.|+.|-....-.+.........|..|+.-... .+.-. ||.|+.|-..
T Consensus 97 P~~~~~~v~~ia~G~-----~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 97 PAEARSGVDAIAAGA-----WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDN 167 (282)
T ss_dssp CGGGSSSEEEEEEET-----TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECC
T ss_pred CcccCCCeEEEECcC-----CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCC
Confidence 111111222222222 2233344 9999999765422111111123456666654332 22233 7999999764
Q ss_pred CCcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecccccccCcccccceEEEEEcCCCCEEEEEeC
Q 007757 460 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 460 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
....+. +.......|..|+.-. .+.++- .+|.|+.|-......+..... ....+..++......++++
T Consensus 168 ~~gqlg-~p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~-----~~~~v~~i~~G~~h~~al~--- 235 (282)
T 3qhy_B 168 YFGQTT-VPAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPTE-----ALSGVSAIASGEWYSLALK--- 235 (282)
T ss_dssp TTSTTS-CCGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCGG-----GGSSCCEEEECSSCEEEEE---
T ss_pred CCCCCC-CceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCcc-----cCCCceEEEcCCCEEEEEE---
Confidence 321111 1111123455555433 333333 599999997654332211110 1123445555444333333
Q ss_pred CCcEEEEeCCCCeEEEEEecCCCCEEEEEEcC
Q 007757 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 571 (590)
Q Consensus 540 dg~I~iwd~~t~~~~~~l~~h~~~V~~v~~sp 571 (590)
+|.|+.|-.....++.. ...|.+++--.
T Consensus 236 ~g~v~~wG~n~~gq~~v----~~~v~~iaaG~ 263 (282)
T 3qhy_B 236 NGKVIAWGSSRTAPSSV----QSGVSSIEAGP 263 (282)
T ss_dssp TTEEEEESTTCCCCGGG----SSCEEEEEECS
T ss_pred CCEEEEecCCCCccccC----CCCcEEEEECc
Confidence 89999997655333221 23466666654
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.09 E-value=1.1 Score=47.59 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=62.8
Q ss_pred cEEEEECCC----CceEEEEcccCCceeEEEEeCCCCEEEEEe-CCCcEEEEECCCCc-------------EEEEeecCC
Q 007757 410 KIVQWDMNT----KEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGIPV-------------VIKYISEPH 471 (590)
Q Consensus 410 ~I~vwDl~t----~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s-~Dg~I~iwdl~~~~-------------~~~~~~~~~ 471 (590)
.|.+.|.+. +..+..+-.-......+.++|+|+++++++ .+.++.++|+.... ..... ..
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--EL 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cC
Confidence 477888876 333333333445567899999999988765 47789999986311 12222 23
Q ss_pred CCcccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 472 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 472 ~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
.-.....+|.++|....+...|.+|.-|++..
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 44566789999995555666899999999865
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=81.75 E-value=40 Score=32.71 Aligned_cols=139 Identities=7% Similarity=0.005 Sum_probs=78.1
Q ss_pred EEEecCCCEEEEEe----CCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEE
Q 007757 349 ISFCNDGTKFLTAS----YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 424 (590)
Q Consensus 349 l~fspdg~~l~s~s----~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~ 424 (590)
..|++++.+|+-+. ....|..-++......+...... ..+.+.+ ..++.+......|++.++..+.....
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g--~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSD--RYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEET--TEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEEC--CEEEEEeCCCceEEEEECCCCCEEEE
Confidence 36788888888776 34456666776444333222221 2234433 35555555567899999877654443
Q ss_pred EcccCCceeEEEEeCCCCEEEEEeCC--CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc--CCeEEEEE
Q 007757 425 YDQHLGAVNTITFVDSNRRFVTSSDD--KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYS 500 (590)
Q Consensus 425 ~~~h~~~V~~i~~~p~~~~l~s~s~D--g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~--dg~I~iwd 500 (590)
+. +... +.++|++.+|+-.... ..|..-++..... ..+. ...+ ..|+|++.+|+.++. .+.|...+
T Consensus 183 ~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~ 252 (302)
T 3s25_A 183 YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT---EANI--EHYNVYGSLIFYQRGGDNPALCVVK 252 (302)
T ss_dssp EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS---CSCE--EEEEEETTEEEEEECSSSCEEEEEE
T ss_pred eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe---CCCc--ceEEECCCEEEEEECCCCcEEEEEE
Confidence 33 2222 3456888888776544 3566666654442 2222 1223 347888888876543 35566666
Q ss_pred ccC
Q 007757 501 TRE 503 (590)
Q Consensus 501 ~~~ 503 (590)
+..
T Consensus 253 ~DG 255 (302)
T 3s25_A 253 NDG 255 (302)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.44 E-value=48 Score=33.43 Aligned_cols=188 Identities=6% Similarity=-0.023 Sum_probs=99.2
Q ss_pred CeEEEEECCCC--cEEEEccCCCC-------ceEEEEe-cC----CCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCC
Q 007757 365 KNIKYWDTETG--QVIRTFSTGKI-------PYVVKLN-PD----DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG 430 (590)
Q Consensus 365 g~I~vWd~~t~--~~~~~~~~~~~-------~~~~~~~-~~----~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~ 430 (590)
-.|.+||+.++ +.++++..... ...+.+. .. ..+....++=...+.|.++|+.+++..+.+..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 36889999999 99888765422 2233443 11 112233444445788999999999877766322
Q ss_pred ceeEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeecCCCCcccEEEEcCC----CCEEEEEEcCCeEEEEEccCc--
Q 007757 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN----TNWLAAQSLDNQILIYSTRER-- 504 (590)
Q Consensus 431 ~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~----g~~l~s~s~dg~I~iwd~~~~-- 504 (590)
|.|+....++. +|.-.-| ...+..|+++|+ +++|..+...+. ++|.+.+.
T Consensus 201 ------~~pd~~~~~~i--~G~~~~~---------------~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L 256 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEYEF---------------KAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKEL 256 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEEEE---------------CCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHH
T ss_pred ------CccccCcceEE--CCEEeEe---------------ccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHh
Confidence 22331111111 1211111 235788899987 777877766552 34443321
Q ss_pred ---eeecccccccCccc-ccceEEEEEc-CCCCEEEEEeCCCcEEEEeCCC-C---eEEEEEecCC--CCEEEEEEcCCC
Q 007757 505 ---FQLNKKKRFAGHIV-AGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKS-C---KVFRTLKCHE--GVCIGCEWHPLE 573 (590)
Q Consensus 505 ---~~~~~~~~~~~~~~-~~~v~~v~~s-pdg~~l~sgs~dg~I~iwd~~t-~---~~~~~l~~h~--~~V~~v~~sp~~ 573 (590)
.....+..+ |... ......+++. .+|.++++--....|..|+..+ . ..+..+.... .-+.++.+.+ +
T Consensus 257 ~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~ 334 (381)
T 3q6k_A 257 KQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-K 334 (381)
T ss_dssp SSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-T
T ss_pred hCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-C
Confidence 111111111 1110 1223346675 6777777777888999999875 1 1222222111 2467777766 4
Q ss_pred CCEEEEE
Q 007757 574 QSKVATC 580 (590)
Q Consensus 574 ~~~l~s~ 580 (590)
+.+.++.
T Consensus 335 g~Lwv~s 341 (381)
T 3q6k_A 335 GGLWFMS 341 (381)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 4454444
No 354
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=81.33 E-value=42 Score=32.67 Aligned_cols=236 Identities=7% Similarity=-0.016 Sum_probs=120.0
Q ss_pred CCEEEEEeCCCcEEEEEccCCCeeEE---------EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEEC---CC-----
Q 007757 312 GHLILSAGMDTKVKIWDVVNSGKCMR---------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT---ET----- 374 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~~~~~~---------~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~---~t----- 374 (590)
..++++.+.+|.|+--.+. ..+..+ .+. -...+..+........|+..+..|.+.-... ..
T Consensus 3 e~~~v~~T~~G~iKr~~~~-~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLS-EYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CEEEEEEETTSEEEEEECC----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CcEEEEEeCCCEEEEeeHH-HhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 5678888999999877652 211111 112 2234444445555567777777787665543 21
Q ss_pred -CcEEE---EccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-------CceEEEEcccCCceeEEEEeCCCCE
Q 007757 375 -GQVIR---TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDSNRR 443 (590)
Q Consensus 375 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-------~~~~~~~~~h~~~V~~i~~~p~~~~ 443 (590)
|..+. .+..+..+..+.....-.....++..+..|.++...+.. +.....+..+ +.+..+........
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22211 122222222222221112235788899999999887642 1111223333 55666666656667
Q ss_pred EEEEeCCCcEEEEECCC-------CcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecc----ccc
Q 007757 444 FVTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----KKR 512 (590)
Q Consensus 444 l~s~s~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~----~~~ 512 (590)
++..+..|.+..+.... ..-.+.+.......|.++....++..|++.+..|.++-.++..-..... ...
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~ 239 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence 88888889888887632 1112222223344566665555566788889999988887643211101 000
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
+.-....+.+..+....+...|+..+.+|.+.-+....
T Consensus 240 ~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 240 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11000112333333333344555666677666665544
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.39 E-value=50 Score=32.44 Aligned_cols=272 Identities=7% Similarity=-0.013 Sum_probs=134.2
Q ss_pred CCEEEEEeCCCcEEEEEccC------CCeeEEEec-cCCCceeEEEEecCCCEEEEEeCCCeEEEEE---CCC------C
Q 007757 312 GHLILSAGMDTKVKIWDVVN------SGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWD---TET------G 375 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~------~~~~~~~~~-~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd---~~t------~ 375 (590)
..++++.+.+|.|+--.+.. .++-+..+. .....+..+........|+.-+..|.+.... +.. |
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 35778888888888665410 001111111 1233455555555556666666677665543 322 2
Q ss_pred cEEEE-cc--CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCc-------eEEEEcccCCceeEEEEeCCCCEEE
Q 007757 376 QVIRT-FS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-------ITQEYDQHLGAVNTITFVDSNRRFV 445 (590)
Q Consensus 376 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~-------~~~~~~~h~~~V~~i~~~p~~~~l~ 445 (590)
..+.. +. .+..+..+.....-.....++..+.+|.|+...+..-. ....+.. ...+..+........++
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 22211 11 22222222222221234689999999999998765321 1112222 34555565555667888
Q ss_pred EEeCCCcEEEEECC--CC-------cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeecc----ccc
Q 007757 446 TSSDDKSLRVWEFG--IP-------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----KKR 512 (590)
Q Consensus 446 s~s~Dg~I~iwdl~--~~-------~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~----~~~ 512 (590)
..+..|.+..+... .- .-...+.......|.++...+.+.+|+..+..|.++.-.+..-....+ ...
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 88889988888765 21 111112223344566666666677899999999998887654221111 001
Q ss_pred ccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-------EEEEec-CCCCEEEEEEcCCCCCEEEEEeCCC
Q 007757 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-------FRTLKC-HEGVCIGCEWHPLEQSKVATCGWDG 584 (590)
Q Consensus 513 ~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~-------~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG 584 (590)
+.-......+..+....+...|+..+.+|.+.-++...-.. +..++. ....|.++...+.+...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 11000012333344444455677777788877776543221 111111 2346777777664445566666655
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.22 E-value=11 Score=39.28 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=59.1
Q ss_pred CCceeEEEEeCCCC-EEEEEeCCCcEEEEECCCC---cEEEEeecC--------CCCcccEEEEcCC----CCEEEEEEc
Q 007757 429 LGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIP---VVIKYISEP--------HMHSMPSISLHPN----TNWLAAQSL 492 (590)
Q Consensus 429 ~~~V~~i~~~p~~~-~l~s~s~Dg~I~iwdl~~~---~~~~~~~~~--------~~~~i~~i~~sp~----g~~l~s~s~ 492 (590)
......|+|.|++. +|+++...|.|++++.... ..+..+... .......|+++|+ +.+.++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34567899999986 5666677899999975322 122222110 1345678999996 333333332
Q ss_pred C------------CeEEEEEccCc--e-----eecccccccCcccccceEEEEEcCCCCEEEEEeC
Q 007757 493 D------------NQILIYSTRER--F-----QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 539 (590)
Q Consensus 493 d------------g~I~iwd~~~~--~-----~~~~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~ 539 (590)
. ..|.-|.+... . ....+..+...........|.|.|||.+.++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 14555655421 0 0001111110011223567999999987665543
No 357
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.18 E-value=52 Score=31.41 Aligned_cols=195 Identities=7% Similarity=0.022 Sum_probs=107.9
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEE---EccCCC-eeEEEeccCCCceeEEEEec--CCCEEEEEeCCCeEEEEECC
Q 007757 300 KGVSAIRFFPKYGHLILSAGMDTKVKIW---DVVNSG-KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTE 373 (590)
Q Consensus 300 ~~V~~l~fsp~~g~~L~sgs~Dg~I~iW---d~~~~~-~~~~~~~~h~~~V~~l~fsp--dg~~l~s~s~Dg~I~vWd~~ 373 (590)
..+..+..... ...|+.-+..|.++-- ++.... .-+ + .....|..+.. . +..+++.++.+|.|+...+.
T Consensus 24 D~~~~~~~~~t-~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 24 APVVNILRVPF-TEGLFLVSNRGRVYWIAGSQALQGSKVSL--K-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp CCEEEEEEEET-TSCEEEEETTSEEEEECSHHHHTSEECCC--S-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGG
T ss_pred CeEEEEEEECC-CCEEEEEcCCCeEEEEEhhhCccCccccc--C-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHH
Confidence 34555554444 4456666677876643 332111 112 2 23455666644 4 56789999999999999875
Q ss_pred CCc----EEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC---------CceEEEEcccCCceeEEEEeCC
Q 007757 374 TGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---------KEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 374 t~~----~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t---------~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
.-. -+..+.....-..+....... ...++..+..|.++.+.... |.....+. ....|..+...++
T Consensus 99 ~~~~~~~G~~~i~lkegD~l~~~~~~~~-~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~ 176 (276)
T 3no0_A 99 EFEYKAQGMPIIKLTEGDEVVSIASSVD-ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNG 176 (276)
T ss_dssp GTTTCSTTEECSCCCTTCCEEEEEECCS-SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESS
T ss_pred HhhhhcCCeEEEecCCCCEEEEEEEeCC-CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCC
Confidence 432 112222222222222222222 24688888899988886532 11111222 2355666666666
Q ss_pred CCEEEEEeCCCcEEEEECCC-------CcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEE--EEccC
Q 007757 441 NRRFVTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI--YSTRE 503 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~i--wd~~~ 503 (590)
+..++..+..|.++...+.. +.-+..+ .....+..+........++..+.+|.+.. ++...
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 77899999999998887632 1222233 22334444433334456777777888777 77654
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.48 E-value=96 Score=34.10 Aligned_cols=240 Identities=10% Similarity=0.094 Sum_probs=116.8
Q ss_pred eeEEE-EcCCCCCEEEEEeCCC----cEEEEEccCCCeeEE-EeccCC-C------ceeEEEEecCCCEEEEE-------
Q 007757 302 VSAIR-FFPKYGHLILSAGMDT----KVKIWDVVNSGKCMR-TYMGHS-K------AVRDISFCNDGTKFLTA------- 361 (590)
Q Consensus 302 V~~l~-fsp~~g~~L~sgs~Dg----~I~iWd~~~~~~~~~-~~~~h~-~------~V~~l~fspdg~~l~s~------- 361 (590)
...+. ++|++..++++-|..| .|+++|+ .+++.+. .+..-. . ....++|..+..++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~-~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDL-EKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEET-TTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEEC-CcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 34444 7888444444444433 6999999 5665542 111000 0 11345887444444432
Q ss_pred ---eCCCeEEEEECCCCc--EEEEccCCCCceEEEEecCCCCCc----EEEEEEcC---CcEEEEECCC--CceEEEEcc
Q 007757 362 ---SYDKNIKYWDTETGQ--VIRTFSTGKIPYVVKLNPDDDKQN----ILLAGMSD---KKIVQWDMNT--KEITQEYDQ 427 (590)
Q Consensus 362 ---s~Dg~I~vWd~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~----~lvsg~~d---g~I~vwDl~t--~~~~~~~~~ 427 (590)
++...|+.|.+.+.. -...+........+......+... ++++.+.+ ..+++.|... ++. ..+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence 123578999887652 222333322222222222222222 34444322 4567777653 332 22322
Q ss_pred cCCceeEEEEeCCCCEEEEE----------eCCCcEEEEECCCCc-------EEE-EeecCCCCcccEEEEcCCCCEEEE
Q 007757 428 HLGAVNTITFVDSNRRFVTS----------SDDKSLRVWEFGIPV-------VIK-YISEPHMHSMPSISLHPNTNWLAA 489 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~----------s~Dg~I~iwdl~~~~-------~~~-~~~~~~~~~i~~i~~sp~g~~l~s 489 (590)
... ..+..+..+..++.. ...+.|.+.++..+. ... .+.......+..+.+..+ .++++
T Consensus 289 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 222 122334455554433 246779999986631 122 243334556778888865 56666
Q ss_pred EEcCCe--EEEEEccCce-eecccccccCcccccceEEEEEcCCCC-EEEEEe---CCCcEEEEeCC
Q 007757 490 QSLDNQ--ILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD---GEGKCWFWDWK 549 (590)
Q Consensus 490 ~s~dg~--I~iwd~~~~~-~~~~~~~~~~~~~~~~v~~v~~spdg~-~l~sgs---~dg~I~iwd~~ 549 (590)
...++. |.++++.++. .......+.. .+.+..+.+++++. ++++.+ .-+.++.+|+.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~---~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPY---QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCS---TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCC---CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 677765 5666665442 1111011211 13344456667665 444443 24678888876
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=74.14 E-value=1.1e+02 Score=33.64 Aligned_cols=228 Identities=10% Similarity=0.090 Sum_probs=115.1
Q ss_pred EEE-EecCCCEEEEE-eCC----CeEEEEECCCCcEEEE-cc-CCCC-------ceEEEEecCCCCCcEEEEE-------
Q 007757 348 DIS-FCNDGTKFLTA-SYD----KNIKYWDTETGQVIRT-FS-TGKI-------PYVVKLNPDDDKQNILLAG------- 405 (590)
Q Consensus 348 ~l~-fspdg~~l~s~-s~D----g~I~vWd~~t~~~~~~-~~-~~~~-------~~~~~~~~~~~~~~~lvsg------- 405 (590)
.+. ++|++++++.+ |.. ..|+++|+.+++.+.. |. ..+. ...++|... ..++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~---~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK---DTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET---TEEEECCCCSTTCB
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC---CEEEEEeCCCCCCc
Confidence 344 78888877654 222 4799999999987632 22 1111 023355421 1333321
Q ss_pred ---EcCCcEEEEECCCCc--eEEEEcccCCce-eEEEEeCCCC-----EEEEEeCC---CcEEEEECCCC-cEEEEeecC
Q 007757 406 ---MSDKKIVQWDMNTKE--ITQEYDQHLGAV-NTITFVDSNR-----RFVTSSDD---KSLRVWEFGIP-VVIKYISEP 470 (590)
Q Consensus 406 ---~~dg~I~vwDl~t~~--~~~~~~~h~~~V-~~i~~~p~~~-----~l~s~s~D---g~I~iwdl~~~-~~~~~~~~~ 470 (590)
+....|+.|.+-+.. -...+......+ .+...+++++ .+++.+.+ ..+++.+...+ .....+..+
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 112568888887652 233343333332 2344455655 24444322 34566666532 223334333
Q ss_pred CCCcccEEEEcCCCCEEEEE----------EcCCeEEEEEccCcee----ecccccccCcccccceEEEEEcCCCCEEEE
Q 007757 471 HMHSMPSISLHPNTNWLAAQ----------SLDNQILIYSTRERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536 (590)
Q Consensus 471 ~~~~i~~i~~sp~g~~l~s~----------s~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~v~~v~~spdg~~l~s 536 (590)
.... +..+..+.+++.. ...+.|...++.+... ......+-.+.....+..+.+..+ .++++
T Consensus 290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 290 SDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp TTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred Ccce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 3222 2334455544422 2457788888876421 111111112222445667888876 56677
Q ss_pred EeCCCc--EEEEeCCCCe-EEEE-EecC-CCCEEEEEEcCCCCCEEEEEeC
Q 007757 537 GDGEGK--CWFWDWKSCK-VFRT-LKCH-EGVCIGCEWHPLEQSKVATCGW 582 (590)
Q Consensus 537 gs~dg~--I~iwd~~t~~-~~~~-l~~h-~~~V~~v~~sp~~~~~l~s~g~ 582 (590)
...++. |.++++.++. .... +... .+.+..+.+.+++..++++.+.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss 416 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIEN 416 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEEC
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEec
Confidence 766664 6778876665 2333 3222 2456666666655556666554
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.91 E-value=56 Score=37.34 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=33.9
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
.|.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 567778888888999999999999999999999887643
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=72.51 E-value=82 Score=31.51 Aligned_cols=148 Identities=10% Similarity=0.004 Sum_probs=84.2
Q ss_pred ecCCCEEEEEeCCCeEEEEECCC---------CcEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC---CC-
Q 007757 352 CNDGTKFLTASYDKNIKYWDTET---------GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM---NT- 418 (590)
Q Consensus 352 spdg~~l~s~s~Dg~I~vWd~~t---------~~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl---~t- 418 (590)
-++..++++.+.+|.|+--.+.. +..-..+..+.....+..... ...++..+..|.++-+.. ..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t---~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNT---HDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECT---TCEEEEEETTSEEEEEEGGGSCBC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecC---CCEEEEEeCCCeEEEEEHHHCcCC
Confidence 46677899999999999875431 222233333333322222222 245666777887776643 21
Q ss_pred -----CceEE---EEcccCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCCcccEEEEcC
Q 007757 419 -----KEITQ---EYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHP 482 (590)
Q Consensus 419 -----~~~~~---~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~~~~~i~~i~~sp 482 (590)
|..+. .+. ....|.++.... .+.+|+.++..|.++...+..- .-+..+.......+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeC
Confidence 21111 111 234566655443 4568999999999998876321 112222222234455555555
Q ss_pred CCCEEEEEEcCCeEEEEEccC
Q 007757 483 NTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 483 ~g~~l~s~s~dg~I~iwd~~~ 503 (590)
....|+..+..|.+..|....
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGG
T ss_pred CCceEEEEeCCCeEEEEEccc
Confidence 566788889999988888654
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=71.90 E-value=76 Score=30.84 Aligned_cols=193 Identities=9% Similarity=0.035 Sum_probs=105.6
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCc-------EEEEcc--CCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC---C-
Q 007757 353 NDGTKFLTASYDKNIKYWDTETGQ-------VIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---K- 419 (590)
Q Consensus 353 pdg~~l~s~s~Dg~I~vWd~~t~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t---~- 419 (590)
++..++++.+.+|.|+--.+..-+ -+..+. .+.....+..... ...++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~---~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT---HDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET---TCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC---CCEEEEEECCCeEEEEEHHHCCCCC
Confidence 456678889999999988764332 122222 2222222222222 23577778888877765431 1
Q ss_pred -----ce---EEEEcccCCceeEEEEeC---CCCEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCCcccEEEEcCC
Q 007757 420 -----EI---TQEYDQHLGAVNTITFVD---SNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPN 483 (590)
Q Consensus 420 -----~~---~~~~~~h~~~V~~i~~~p---~~~~l~s~s~Dg~I~iwdl~~~-----~~~~~~~~~~~~~i~~i~~sp~ 483 (590)
.. ...+. ....|.++...+ +..+|+..+..|.++...+..- .-+..+.......+..+.....
T Consensus 83 r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred ccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 10 00111 123455554443 4668888999999998877322 1122222223445556555555
Q ss_pred CCEEEEEEcCCeEEEEEccCceeecc-cccccCc--ccccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007757 484 TNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGH--IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 484 g~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~--~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~ 549 (590)
...++..+.+|.+..+....-..... ......- .....+..+..-.++..|++.+..|.+....+.
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 66788899999999998764211111 0000000 012344455555566778888999999988874
No 363
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=70.41 E-value=1.4e+02 Score=33.22 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=77.1
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccC-------CCceeEEEEecC-CCEEEEEeCCCe----
Q 007757 299 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFCND-GTKFLTASYDKN---- 366 (590)
Q Consensus 299 ~~~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fspd-g~~l~s~s~Dg~---- 366 (590)
.+.|.+|+++|.+...++.++..+.|...+ ..++.-..+..+ ...|.+|++.|. ...++.+.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 457999999998667788888777765554 345444444332 246999999984 344544442211
Q ss_pred EEEE-ECCCCcEEEEccCC----------CCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcc------cC
Q 007757 367 IKYW-DTETGQVIRTFSTG----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ------HL 429 (590)
Q Consensus 367 I~vW-d~~t~~~~~~~~~~----------~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~------h~ 429 (590)
-.|| ..+.|+.-..+... .....+.+.+... ..++++...+.|. .....++.-..+.. ..
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~--~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNS--NEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEE--EEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTT
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCC--CEEEEEeccCCEE-EECCCCcccCCCccCccccCCC
Confidence 2333 33444433222211 0123456665432 4566666444432 22233333333321 11
Q ss_pred CceeEEEEeCC-CCEEEEEeCC
Q 007757 430 GAVNTITFVDS-NRRFVTSSDD 450 (590)
Q Consensus 430 ~~V~~i~~~p~-~~~l~s~s~D 450 (590)
..+..|.+.|. ...++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 45778888874 3455555544
No 364
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=69.26 E-value=1.1e+02 Score=31.62 Aligned_cols=54 Identities=11% Similarity=0.104 Sum_probs=34.1
Q ss_pred CCeeEEEEcCCCCC-EEEEEeCCCcEEEEEccCC--CeeEEEec---------cCCCceeEEEEecC
Q 007757 300 KGVSAIRFFPKYGH-LILSAGMDTKVKIWDVVNS--GKCMRTYM---------GHSKAVRDISFCND 354 (590)
Q Consensus 300 ~~V~~l~fsp~~g~-~L~sgs~Dg~I~iWd~~~~--~~~~~~~~---------~h~~~V~~l~fspd 354 (590)
..-..|+|.|+ +. .|+++...|.|++++.... ...+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 34578999999 54 4556678899999975211 11222221 11456889999995
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.32 E-value=1.7e+02 Score=33.38 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 007757 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 521 ~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667788889999999999999999999999988764
No 366
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.10 E-value=1.5e+02 Score=34.52 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=31.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 007757 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 558 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~dg~I~iwd~~t~~~~~~l~ 558 (590)
.+++..++..+|++-+.|++++||++.+++++.+..
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345667788999999999999999999999988764
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=67.00 E-value=96 Score=30.09 Aligned_cols=190 Identities=10% Similarity=0.030 Sum_probs=110.1
Q ss_pred CCEEEEEeCCCcEEEEEccCC------CeeEE--EeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECCC---C-----
Q 007757 312 GHLILSAGMDTKVKIWDVVNS------GKCMR--TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET---G----- 375 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~~------~~~~~--~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t---~----- 375 (590)
..++++.+.+|.|+--.+..- +.-+. .+. -...+..+........++..+..|.++-..... .
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 567889999999998876211 01111 122 223455555555666788888888877765531 1
Q ss_pred -cE---EEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-------ceEEEEcccCCceeEEEEeCCCCEE
Q 007757 376 -QV---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-------EITQEYDQHLGAVNTITFVDSNRRF 444 (590)
Q Consensus 376 -~~---~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-------~~~~~~~~h~~~V~~i~~~p~~~~l 444 (590)
.. ...+..+.....+...........++..+..|.++...+..- .....+.. .+.+..+........+
T Consensus 87 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 87 GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp -CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 10 001222222222222221112356888899999998877432 22222332 4566666666666788
Q ss_pred EEEeCCCcEEEEECCC-------CcEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 445 VTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 445 ~s~s~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
+..+..|.+..+.... ..-++.+.......+.++....++..|++.+..|....+.+..
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 8899999998887642 1222233223344566665555667788889999999888754
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.70 E-value=90 Score=29.69 Aligned_cols=151 Identities=10% Similarity=0.028 Sum_probs=84.6
Q ss_pred CcEEEEEEcCCcEEEEECCCCc------eEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCC-------CcEEE
Q 007757 399 QNILLAGMSDKKIVQWDMNTKE------ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGI-------PVVIK 465 (590)
Q Consensus 399 ~~~lvsg~~dg~I~vwDl~t~~------~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~-------~~~~~ 465 (590)
...++..+.+|.|+...+..-. ....+. ....+..+........++..+..|.+..+.... ..-..
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred CCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE
Confidence 3689999999999998765421 111122 234555555555666888888899988887521 11122
Q ss_pred EeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccc-ccccCcccccceEEEEEcCCCCEEEEEeCCCcEE
Q 007757 466 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK-KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 544 (590)
Q Consensus 466 ~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~ 544 (590)
.+.......|..+...+++.+++..+..|.++...+..-....+- +........+.+..+....+...++..+.+|.+.
T Consensus 159 ~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 159 GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 222223455666665566778889999999998887542211110 0000001122333333323344566667777777
Q ss_pred E--EeCCC
Q 007757 545 F--WDWKS 550 (590)
Q Consensus 545 i--wd~~t 550 (590)
. ++...
T Consensus 239 r~~~~~~~ 246 (276)
T 3no0_A 239 YDKINQKD 246 (276)
T ss_dssp EEEEEGGG
T ss_pred EeeeCHHH
Confidence 6 76543
No 369
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=62.54 E-value=1.3e+02 Score=30.00 Aligned_cols=238 Identities=10% Similarity=0.137 Sum_probs=119.1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCe----------eEEEecc-CCCceeEEEEecCCCEEEEEeCCCeEEEE
Q 007757 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGK----------CMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYW 370 (590)
Q Consensus 302 V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~----------~~~~~~~-h~~~V~~l~fspdg~~l~s~s~Dg~I~vW 370 (590)
|..|+.. ....+.-..||.|..|-....++ ....+.. ....+..++++....+.+.-..||.|..|
T Consensus 55 i~~i~~G---~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIGG---EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEEE---TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEeC---CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 4444432 45556667789999986422111 1111221 22345556777666777777889999999
Q ss_pred ECCCC-----------cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-c---------eEEE-Ecc-
Q 007757 371 DTETG-----------QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E---------ITQE-YDQ- 427 (590)
Q Consensus 371 d~~t~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~---------~~~~-~~~- 427 (590)
-.... .....+..-....+..+.... ...++-..+|.|+.|-.... + .... +..
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 64321 011111111111233333322 34566678999999975421 1 1111 111
Q ss_pred cCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC-----------cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeE
Q 007757 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496 (590)
Q Consensus 428 h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~-----------~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I 496 (590)
....|..|+........+....+|.|+.|-.... .....+.......|..|+. ...+.++-..+|.|
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~alt~~G~v 286 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSVALTKSGAV 286 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEEEEETTSCE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEEEEeCCCeE
Confidence 1234566665433356667778999999964321 1112221112223444443 34455556789999
Q ss_pred EEEEccCceeec--------ccccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007757 497 LIYSTRERFQLN--------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550 (590)
Q Consensus 497 ~iwd~~~~~~~~--------~~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t 550 (590)
+.|-.....++- ....... .....|..|+. .....++-..+|.|+.|-...
T Consensus 287 ~~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 287 YTWGKGDYHRLGHGSDDHVRRPRQVQG-LQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred EEEeCCCCCCCCCCCCccccCCeEecc-CCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 999764321110 0000000 00122444443 334455557889999997653
No 370
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=56.99 E-value=1.5e+02 Score=28.93 Aligned_cols=190 Identities=11% Similarity=0.012 Sum_probs=105.2
Q ss_pred CCEEEEEeCCCcEEEEEccC---CCeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEECC---------CCcEEE
Q 007757 312 GHLILSAGMDTKVKIWDVVN---SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE---------TGQVIR 379 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~~---~~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~---------t~~~~~ 379 (590)
..++++.+.+|.|+--.+.. .+.....+.. ...+..+........|+..+..|.+.-.... .|..+.
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~ 83 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChh
Confidence 56788899999998776520 1111111222 2345555555556677777778876665442 122211
Q ss_pred E---ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC--------CceEEEEcccCCceeEEEEeCCCCEEEEEe
Q 007757 380 T---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT--------KEITQEYDQHLGAVNTITFVDSNRRFVTSS 448 (590)
Q Consensus 380 ~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t--------~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s 448 (590)
. +..+..+..+.....-.....++..+.+|.++...+.. +.....+.. .+.+..+........++..+
T Consensus 84 ~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T 162 (323)
T 1wp5_A 84 NIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVT 162 (323)
T ss_dssp GTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEE
T ss_pred hccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEe
Confidence 1 12222222222222111235688889999999987642 111112222 25566666666666788888
Q ss_pred CCCcEEEEECCC-------CcEEEEeecCCCCcccEEEEcCCCC-EEEEEEcCCeEEEEEccC
Q 007757 449 DDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 449 ~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp~g~-~l~s~s~dg~I~iwd~~~ 503 (590)
.+|.+..+.... ..-++.+.......|.++...+.+. .|++.+..|..+..++..
T Consensus 163 ~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 163 HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 899888887632 1122223223344566665544455 788888899888877754
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=54.31 E-value=1.6e+02 Score=28.43 Aligned_cols=228 Identities=7% Similarity=0.026 Sum_probs=116.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEE---------ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC---CC---
Q 007757 354 DGTKFLTASYDKNIKYWDTETGQVIRT---------FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM---NT--- 418 (590)
Q Consensus 354 dg~~l~s~s~Dg~I~vWd~~t~~~~~~---------~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl---~t--- 418 (590)
+...+++.+.+|.|+--.+.+-+..+. +..+.....+..... ...++..+..|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~---~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT---HDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEET---TCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECC---CCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 455788889999998877754322111 112222222222221 135777777888766644 22
Q ss_pred ---CceEE---EEcccCCceeEEEEe---CCCCEEEEEeCCCcEEEEECCC-----CcEEEEeecCCCCcccEEEEcCCC
Q 007757 419 ---KEITQ---EYDQHLGAVNTITFV---DSNRRFVTSSDDKSLRVWEFGI-----PVVIKYISEPHMHSMPSISLHPNT 484 (590)
Q Consensus 419 ---~~~~~---~~~~h~~~V~~i~~~---p~~~~l~s~s~Dg~I~iwdl~~-----~~~~~~~~~~~~~~i~~i~~sp~g 484 (590)
|..+. .+. ....|.++... .++.+++..+..|.++-..+.. ..-+..+.......+..+......
T Consensus 79 ~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC
Confidence 11111 111 23356665443 3456899999999999887631 111222221223455555555556
Q ss_pred CEEEEEEcCCeEEEEEccCceeeccc-ccccC--cccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------e
Q 007757 485 NWLAAQSLDNQILIYSTRERFQLNKK-KRFAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---------K 552 (590)
Q Consensus 485 ~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~--~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~---------~ 552 (590)
..++..+.+|.+..+....-...... ....+ ......+..+....++..|++.+..|.++-.++... .
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 67888899999988887542211110 00000 001234555555555677888899999888876321 1
Q ss_pred EEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 007757 553 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 586 (590)
Q Consensus 553 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 586 (590)
....+..-.+.+..+.... +..-|+..+.+|.+
T Consensus 238 ~~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVD-DCDQIMMITDAGTL 270 (307)
T ss_dssp ESSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCE
T ss_pred EeeEecCCCCeEEEEEEeC-CCceEEEEcCCCcE
Confidence 1222222234565555443 23345555556654
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.16 E-value=53 Score=38.39 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=33.3
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
.+.+++..++..++++-+.|+++|||++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 456667777888999999999999999999999987643
No 373
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=52.50 E-value=1.9e+02 Score=28.82 Aligned_cols=193 Identities=9% Similarity=0.105 Sum_probs=107.7
Q ss_pred cCCCCCEEEEEeCCCcEEEEEcc-----C-C--CeeEEEeccCCCceeEEEEecCCCEEEEEeCCCeEEEEEC---C---
Q 007757 308 FPKYGHLILSAGMDTKVKIWDVV-----N-S--GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT---E--- 373 (590)
Q Consensus 308 sp~~g~~L~sgs~Dg~I~iWd~~-----~-~--~~~~~~~~~h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~---~--- 373 (590)
-|+ ..++++.+.+|.|+--.+. . . +.....++ ....+..+........|+..+..|.+.-+.. .
T Consensus 4 I~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 355 6789999999999976541 1 1 11222232 3455666666666667777777887766543 2
Q ss_pred ---CCcEEEE---ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCC-------CceEEEEcccCCceeEEEEeCC
Q 007757 374 ---TGQVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 374 ---t~~~~~~---~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t-------~~~~~~~~~h~~~V~~i~~~p~ 440 (590)
.|..+.. +..+..+..+...........|+..+..|.++...+.. +.....+.. .+.+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 1222111 22222222222222112335899999999999887642 111122322 345555666556
Q ss_pred CCEEEEEeCCCcEEEEECCC-------CcEEEEeecCCCCcccEEEEcC-------------------------------
Q 007757 441 NRRFVTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHP------------------------------- 482 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~-------~~~~~~~~~~~~~~i~~i~~sp------------------------------- 482 (590)
...++..+..|.+..+.... ..-++.+.......|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 66788888888888787532 1112222222334455544443
Q ss_pred ----CCCEEEEEEcCCeEEEEEccC
Q 007757 483 ----NTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 483 ----~g~~l~s~s~dg~I~iwd~~~ 503 (590)
.+..+++.+..|..+...+..
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHH
Confidence 446788889999988887754
No 374
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.39 E-value=55 Score=35.11 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=44.1
Q ss_pred eeEEEEeCCCCEEEEEeCC------------CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEE
Q 007757 432 VNTITFVDSNRRFVTSSDD------------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491 (590)
Q Consensus 432 V~~i~~~p~~~~l~s~s~D------------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s 491 (590)
.-.|+|++.|+++++...+ ..+.+.+...+...+.+..+....++.++|+|+++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4568999999877765432 23555566667776666677788899999999998887753
No 375
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=45.30 E-value=2.4e+02 Score=27.93 Aligned_cols=264 Identities=11% Similarity=0.110 Sum_probs=122.5
Q ss_pred CEEEEEeCCCcEEEEEccCCCee-------EEE---ecc-CCCceeEEEEecCCCEEEEEeCCCeEEEEECCCC------
Q 007757 313 HLILSAGMDTKVKIWDVVNSGKC-------MRT---YMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG------ 375 (590)
Q Consensus 313 ~~L~sgs~Dg~I~iWd~~~~~~~-------~~~---~~~-h~~~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~------ 375 (590)
..++.-..||+|..|=....+++ ... +.. ....|..|+. .....+.-..||.|..|-....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 45555566788888865332221 111 100 1113444443 3445666677899999964321
Q ss_pred --c---EEEEccC--CCCceEEEEecCCCCCcEEEEEEcCCcEEEEECCCC-c---------e-EEEEcccC-CceeEEE
Q 007757 376 --Q---VIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E---------I-TQEYDQHL-GAVNTIT 436 (590)
Q Consensus 376 --~---~~~~~~~--~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~-~---------~-~~~~~~h~-~~V~~i~ 436 (590)
. ....+.. ......+.+... ....++-..+|.|+.|-.... + . ...+.... ..|..|+
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~G---~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va 165 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNSG---GKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECTT---CSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CcCCccCCEEcccccCCceeEEEECcC---CCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE
Confidence 0 1111111 111223344332 245666678999999965421 0 1 11111111 2455555
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC-----------cEEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCce
Q 007757 437 FVDSNRRFVTSSDDKSLRVWEFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 505 (590)
Q Consensus 437 ~~p~~~~l~s~s~Dg~I~iwdl~~~-----------~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~ 505 (590)
.. ....+....+|.|+.|-.... .....+.......|..++......+.++-..+|.|+.|-.....
T Consensus 166 ~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 166 AG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG 243 (389)
T ss_dssp EC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred eC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Confidence 43 456666678999999975321 11122222223345555554334567777889999999754321
Q ss_pred eecc--------cccccCcccccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--------e---EEEEEec-CCCCEE
Q 007757 506 QLNK--------KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--------K---VFRTLKC-HEGVCI 565 (590)
Q Consensus 506 ~~~~--------~~~~~~~~~~~~v~~v~~spdg~~l~sgs~dg~I~iwd~~t~--------~---~~~~l~~-h~~~V~ 565 (590)
++-. ...... .....+..++.. ..+.++-..+|.|+.|-.... . ....+.. ....|.
T Consensus 244 qLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~ 320 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKIDS-LTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI 320 (389)
T ss_dssp TTSSSSCCCEEEEEECGG-GTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEE
T ss_pred CCCCCCCCCccccEEecc-cCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEE
Confidence 1100 000000 001124344432 334445567889999965321 0 1111111 123566
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 566 GCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 566 ~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.++.- ....+....||.|..|
T Consensus 321 ~ia~G---~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 321 AIATG---SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEEEC---SSEEEEEETTCCEEEE
T ss_pred EEEec---cCeEEEECCCCCEEEe
Confidence 77663 3455556778888888
No 376
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=42.94 E-value=2.4e+02 Score=27.38 Aligned_cols=188 Identities=9% Similarity=0.022 Sum_probs=103.3
Q ss_pred CCEEEEEeCCCcEEEEEcc---C-----CCeeEEEec--cCCCceeEEEEec---CCCEEEEEeCCCeEEEEECCCCc--
Q 007757 312 GHLILSAGMDTKVKIWDVV---N-----SGKCMRTYM--GHSKAVRDISFCN---DGTKFLTASYDKNIKYWDTETGQ-- 376 (590)
Q Consensus 312 g~~L~sgs~Dg~I~iWd~~---~-----~~~~~~~~~--~h~~~V~~l~fsp---dg~~l~s~s~Dg~I~vWd~~t~~-- 376 (590)
...|+.-+..|.++-..+. . .+.++..+. .....|..+...+ +..+++.++.+|.|+...+....
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 4556656667766554432 1 122221111 1234555554433 47799999999999998865422
Q ss_pred ---EEEE--ccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEECC--CCce-------E--EEEcccCCceeEEEEeCC
Q 007757 377 ---VIRT--FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN--TKEI-------T--QEYDQHLGAVNTITFVDS 440 (590)
Q Consensus 377 ---~~~~--~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~--t~~~-------~--~~~~~h~~~V~~i~~~p~ 440 (590)
-+.. +..+.....+.... . ...++..+..|.+..+... .-.. + ..+ .....|.++...+.
T Consensus 133 ~r~G~~~i~lke~D~lv~~~~~~-~--~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~ 208 (327)
T 3uc1_A 133 RSGGIVAVNLRDNDELVGAVLCS-A--GDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVRE 208 (327)
T ss_dssp CSSCEESCBCCTTCCEEEEEEEC-T--TCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCT
T ss_pred ccCceEEEEECCCCEEEEEEEec-C--CCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECC
Confidence 1222 22222222222222 2 2457778888998888776 2111 1 111 12345777777666
Q ss_pred CCEEEEEeCCCcEEEEECCCC-------cEEEEeecCC-CCcccEEEEcCCCCEEEEEEcCCeEEEEEccC
Q 007757 441 NRRFVTSSDDKSLRVWEFGIP-------VVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503 (590)
Q Consensus 441 ~~~l~s~s~Dg~I~iwdl~~~-------~~~~~~~~~~-~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~ 503 (590)
+..++..+..|.++.-.+..- .-+..+.... ...+..+........++..+.+|.+..+....
T Consensus 209 ~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 209 GTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 778999999999988875321 2222222111 23344444444455677778888888887654
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.52 E-value=75 Score=34.07 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=40.5
Q ss_pred EEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCeEEEEEecCC-CCEEEEEEcCCCCCEEE
Q 007757 523 CQVNFSPDGRFVMSGDGE------------GKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVA 578 (590)
Q Consensus 523 ~~v~~spdg~~l~sgs~d------------g~I~iwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~ 578 (590)
-.|+|+|.|+++++-+.+ ..+.+.+..++++...+.++. ..++.++|+|++..+++
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 358999999987776543 246667777888877777664 47999999995443444
No 378
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=38.28 E-value=1.2e+02 Score=32.31 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=44.3
Q ss_pred CceeEEEEeCCCCEEEEEeCC------------CcEEEEECCCCcEEEEeecCCCCcccEEEEcCCCCEEEEEEc
Q 007757 430 GAVNTITFVDSNRRFVTSSDD------------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492 (590)
Q Consensus 430 ~~V~~i~~~p~~~~l~s~s~D------------g~I~iwdl~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 492 (590)
.....|.|.++|.+.++.... ..|..++..++.....+..+....++.++|+|+++.|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 446789999999877754321 256666666666655554455677999999999998887643
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.32 E-value=41 Score=36.91 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=30.6
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEccC
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~~~~~~~~~ 383 (590)
.|.++.+ +..++++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 477999999999999999999999887765
No 380
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=37.27 E-value=4.4e+02 Score=28.70 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=38.6
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEEccCCCeeEEEeccC-------CCceeEEEEec-CCCEEEEEe
Q 007757 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGH-------SKAVRDISFCN-DGTKFLTAS 362 (590)
Q Consensus 301 ~V~~l~fsp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fsp-dg~~l~s~s 362 (590)
.|..|+++|.+...|+.+...+.|..++ ..++.-..+..+ ...|.+|+++| +...++.+.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 7999999998667777777666655554 345444444332 24589999998 434444443
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=36.50 E-value=4.7e+02 Score=28.80 Aligned_cols=147 Identities=7% Similarity=0.043 Sum_probs=71.3
Q ss_pred CCceeEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEccCC--------CCceEEEEecCCCCCcEEEEEEcCCc---
Q 007757 343 SKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGMSDKK--- 410 (590)
Q Consensus 343 ~~~V~~l~fspd-g~~l~s~s~Dg~I~vWd~~t~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lvsg~~dg~--- 410 (590)
...|.+|+++|. ...++.++..+.|...+ +.|+.-..+... .....+.+.+... ..++++.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~--~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP--DRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE--EEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCC--CEEEEEeCccCCCc
Confidence 468999999994 45677777667665554 334333333221 2344555655332 34555443311
Q ss_pred -EEEE-ECCCCceEEEEccc-------C--CceeEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEeec-----CCCC
Q 007757 411 -IVQW-DMNTKEITQEYDQH-------L--GAVNTITFVDSN-RRFVTSSDDKSLRVWEFGIPVVIKYISE-----PHMH 473 (590)
Q Consensus 411 -I~vw-Dl~t~~~~~~~~~h-------~--~~V~~i~~~p~~-~~l~s~s~Dg~I~iwdl~~~~~~~~~~~-----~~~~ 473 (590)
-.|| ....++.-..+... . ..+..|++.|.. ..++.+...+.|.. ....++.-..+.. ....
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTT
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCC
Confidence 2233 33344433333211 1 135678888753 45555553443321 2222222222221 0124
Q ss_pred cccEEEEcCC-CCEEEEEEcC
Q 007757 474 SMPSISLHPN-TNWLAAQSLD 493 (590)
Q Consensus 474 ~i~~i~~sp~-g~~l~s~s~d 493 (590)
.+..+.++|. ...++++..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 5778888885 4456666554
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=34.59 E-value=1.2e+02 Score=33.32 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=27.4
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q 007757 529 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 559 (590)
Q Consensus 529 pdg~~l~sgs~dg~I~iwd~~t~~~~~~l~~ 559 (590)
.+..+|++-+.|.++++|++.+++++.+...
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3578999999999999999999999888764
No 383
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=32.78 E-value=3.5e+02 Score=26.18 Aligned_cols=194 Identities=9% Similarity=0.008 Sum_probs=102.5
Q ss_pred cCCCEEEEEeCCCeEEEEECCCC----cEEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcEEEEEC---CC------C
Q 007757 353 NDGTKFLTASYDKNIKYWDTETG----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM---NT------K 419 (590)
Q Consensus 353 pdg~~l~s~s~Dg~I~vWd~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl---~t------~ 419 (590)
|+...+++.+.+|.|+--.+..- ..-..+..+.....+..... ...++..+..|.++-+.. .. |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t---~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNT---KDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEET---TSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECC---CCEEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 45567888899999987755311 11011222222222222221 135777777888766644 21 2
Q ss_pred ceEEE-Ec-ccCCceeEEEEeCC---CCEEEEEeCCCcEEEEECCC------CcEEEEeecCCCCcccEEEEcCCCCEEE
Q 007757 420 EITQE-YD-QHLGAVNTITFVDS---NRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHPNTNWLA 488 (590)
Q Consensus 420 ~~~~~-~~-~h~~~V~~i~~~p~---~~~l~s~s~Dg~I~iwdl~~------~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 488 (590)
..+.. +. .....|.++...++ +.+++..+..|.++-..+.. ..-+..+.......+..+........|+
T Consensus 80 ~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEE
Confidence 21111 11 12234665544443 56899999999999988731 1222222222334555555555566788
Q ss_pred EEEcCCeEEEEEccCceeecc-cccccCc--ccccceEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 007757 489 AQSLDNQILIYSTRERFQLNK-KKRFAGH--IVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWK 549 (590)
Q Consensus 489 s~s~dg~I~iwd~~~~~~~~~-~~~~~~~--~~~~~v~~v~~spdg~-~l~sgs~dg~I~iwd~~ 549 (590)
..+.+|.+..|....-..... -....+- .....+..+..-+++. .|++.+..|..+..++.
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 889999999998754211111 0000000 0123344454434444 78888888888877764
No 384
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=32.60 E-value=3.9e+02 Score=26.65 Aligned_cols=188 Identities=8% Similarity=0.086 Sum_probs=96.0
Q ss_pred cEEEEEccCCC--eeEEEecc------CCCceeEEEEe---cC----CCEEEEEe-CCCeEEEEECCCCcEEEEccCCCC
Q 007757 323 KVKIWDVVNSG--KCMRTYMG------HSKAVRDISFC---ND----GTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKI 386 (590)
Q Consensus 323 ~I~iWd~~~~~--~~~~~~~~------h~~~V~~l~fs---pd----g~~l~s~s-~Dg~I~vWd~~t~~~~~~~~~~~~ 386 (590)
+|.+||+ .+. +.++++.- ....+.++.+. +. +.++..+. ..+-|.|+|+.+++..+.....
T Consensus 124 kLv~~DL-~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 124 AIVAYDL-KQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp EEEEEES-SSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred eEEEEEC-CCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 4556666 344 55555432 13457777777 21 23433333 4678999999999887765311
Q ss_pred ceEEEEecCCCCCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCC----CCEEEEEeCCCcEEEEECC---
Q 007757 387 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS----NRRFVTSSDDKSLRVWEFG--- 459 (590)
Q Consensus 387 ~~~~~~~~~~~~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~----~~~l~s~s~Dg~I~iwdl~--- 459 (590)
+.++ .. ..+.. +|.-.. -...|..|+++|+ ++.|.-....+. ++|.+.
T Consensus 201 -----~~pd-~~-~~~~i---~G~~~~--------------~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~ 255 (381)
T 3q6k_A 201 -----FKAE-RP-TKFDY---GGKEYE--------------FKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKE 255 (381)
T ss_dssp -----GSCC-SC-EEEEE---TTEEEE--------------ECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHH
T ss_pred -----Cccc-cC-cceEE---CCEEeE--------------eccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHH
Confidence 1222 11 11111 121111 1346888999987 677766655442 333331
Q ss_pred --C---CcEEEEeecCC-CCcccEEEEc-CCCCEEEEEEcCCeEEEEEccC-ceeecccccccCcccccceEEEEEcCCC
Q 007757 460 --I---PVVIKYISEPH-MHSMPSISLH-PNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 460 --~---~~~~~~~~~~~-~~~i~~i~~s-p~g~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~v~~v~~spdg 531 (590)
. ...++.+.... ...-..+++. .+|.++++--..+.|..|+..+ .........+.....-.+...+.+..+|
T Consensus 256 L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g 335 (381)
T 3q6k_A 256 LKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG 335 (381)
T ss_dssp HSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS
T ss_pred hhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC
Confidence 1 12222222211 1223345675 5677777777788999999875 3211111111111123355567776666
Q ss_pred CEEEEEe
Q 007757 532 RFVMSGD 538 (590)
Q Consensus 532 ~~l~sgs 538 (590)
.+.+..+
T Consensus 336 ~Lwv~sn 342 (381)
T 3q6k_A 336 GLWFMSN 342 (381)
T ss_dssp CEEEEEC
T ss_pred eEEEEEC
Confidence 6544443
No 385
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=29.76 E-value=1.9e+02 Score=30.82 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=41.1
Q ss_pred eEEEEEcCCCCEEEEEeC------------CCcEEEEeCCCCeEEEEEecC-CCCEEEEEEcCCCCCEEEEE
Q 007757 522 ACQVNFSPDGRFVMSGDG------------EGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATC 580 (590)
Q Consensus 522 v~~v~~spdg~~l~sgs~------------dg~I~iwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~ 580 (590)
...|.|.++|.+.++.+. ...|+.++..++++...+.+. ...++.++|+|++..++++.
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 456999999988875432 226777787788877766654 34689999999554444444
No 386
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.99 E-value=3.8e+02 Score=24.84 Aligned_cols=153 Identities=5% Similarity=-0.077 Sum_probs=0.0
Q ss_pred CCcEEEEEEcCCcEEEEECCCCceEEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCC--------cEEEEeec
Q 007757 398 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--------VVIKYISE 469 (590)
Q Consensus 398 ~~~~lvsg~~dg~I~vwDl~t~~~~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~--------~~~~~~~~ 469 (590)
....+++.+.+|.|+--..........-......+..+........|+..+..|.++-+....- .....+..
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred CCCEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC
Q ss_pred CCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCcee-ecccccccCcccccceEEEEEc-CCCCEEEEEeCCCcEEEEe
Q 007757 470 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWD 547 (590)
Q Consensus 470 ~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~v~~v~~s-pdg~~l~sgs~dg~I~iwd 547 (590)
.....|.++....++.+|+..+..|.++...+..-.. ...-...-.......+..+... .++..|+..+.+|.+..+.
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Q ss_pred CCC
Q 007757 548 WKS 550 (590)
Q Consensus 548 ~~t 550 (590)
...
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
No 387
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=22.21 E-value=5.8e+02 Score=25.22 Aligned_cols=230 Identities=10% Similarity=-0.002 Sum_probs=110.7
Q ss_pred ceeEEEEecCCCEEEEEeCCCeEEEEECCCC-c------------EEEEccCCCCceEEEEecCCCCCcEEEEEEcCCcE
Q 007757 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETG-Q------------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411 (590)
Q Consensus 345 ~V~~l~fspdg~~l~s~s~Dg~I~vWd~~t~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~lvsg~~dg~I 411 (590)
.|..|+. -+.+.+.-..||.|..|-.... + ....+.... .++.+.... ...++-..+|.|
T Consensus 76 ~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~---~hs~al~~~G~v 148 (423)
T 3mvd_K 76 DAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGD---SHSACLLEDGRV 148 (423)
T ss_dssp SEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECS---SEEEEEETTSCE
T ss_pred CceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCC--CEEEEEcCc---CeEEEEeCCCeE
Confidence 4655554 4556777778999999965321 1 001111111 233333322 345566789999
Q ss_pred EEEEC--CC-Cce---------EEEEcccCCceeEEEEeCCCCEEEEEeCCCcEEEEECCCCc-----------------
Q 007757 412 VQWDM--NT-KEI---------TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV----------------- 462 (590)
Q Consensus 412 ~vwDl--~t-~~~---------~~~~~~h~~~V~~i~~~p~~~~l~s~s~Dg~I~iwdl~~~~----------------- 462 (590)
+.|-. .. +++ ..........|..|+.. ..+.+.-..+|.|+.|-.....
T Consensus 149 ~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 226 (423)
T 3mvd_K 149 FAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRG 226 (423)
T ss_dssp EEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTT
T ss_pred EEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccc
Confidence 99985 22 221 11111122345555553 3456666788999999643210
Q ss_pred -----EEEEeecCCCCcccEEEEcCCCCEEEEEEcCCeEEEEEccCceeeccccc-----c-cCcccccceEEEEEcCCC
Q 007757 463 -----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-----F-AGHIVAGYACQVNFSPDG 531 (590)
Q Consensus 463 -----~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----~-~~~~~~~~v~~v~~spdg 531 (590)
....+.......|..++... ...++.-..++.|+.|-.....++..-.. + .-......|..|+. ..
T Consensus 227 ~~~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~ 303 (423)
T 3mvd_K 227 KRDLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQ 303 (423)
T ss_dssp TTTTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CS
T ss_pred cccccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--cc
Confidence 11111112223344444332 12233325788899887543221111000 0 00000122333333 33
Q ss_pred CEEEEEeCCCcEEEEeCCCC------------eEEEEEecCCCCEEEEEEcCCCCCEEEEEeCCCcEEEe
Q 007757 532 RFVMSGDGEGKCWFWDWKSC------------KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589 (590)
Q Consensus 532 ~~l~sgs~dg~I~iwd~~t~------------~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 589 (590)
.+.+.-..+|.|+.|-.... .....+..-...|..|+.-. ...+....||.|..|
T Consensus 304 ~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~---~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 304 HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE---VCSYAVTIDGKLYSW 370 (423)
T ss_dssp SEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET---TEEEEEETTSCEEEE
T ss_pred CeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC---CeEEEEcCCCCEEEE
Confidence 44555567889999965321 11112222223577777643 344445678999888
No 388
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=21.69 E-value=1.6e+02 Score=26.61 Aligned_cols=97 Identities=10% Similarity=0.130 Sum_probs=56.7
Q ss_pred CcEEEEEccCCCeeEEEeccCCCceeEEEEecCCCEEEE-EeCCCeEEEEECCCCcEEEEccCCCCceEEEEecCCCCCc
Q 007757 322 TKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 400 (590)
Q Consensus 322 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fspdg~~l~s-~s~Dg~I~vWd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
..|.||.+ ..+.-+..+..-. +..|.....+-+. .-.+|.|++-+..++.|+..+..+ .....+......+.
T Consensus 69 ~~lt~Wa~-~~~nw~wgY~~~d----s~~FG~~r~W~i~~~~p~G~VqFvN~~TgtCL~ay~nG--vv~~~C~~s~~~Q~ 141 (206)
T 1sr4_A 69 ALLTVWAL-AKRNWLWAYPNIY----SQDFGNIRNWKMEPGKHREYFRFVNQSLGTCVEAYGNG--LIHDICSLDKLAQE 141 (206)
T ss_dssp EEEEECSC-STTCBEEEEEGGG----CGGGGGGGCEEEEECSSTTCEEEEETTTCCEEEEETTE--EEEECCCTTCGGGC
T ss_pred CEEEEEec-CCCcceeeecccc----cCCcCCcceeEEEeecCCCEEEEEECCCCceeeeccCC--eEEecCCCCCcccE
Confidence 45688988 5666665554221 1122222223333 456799999999999999886543 11111221111234
Q ss_pred EEEEEEcCCcEEEEECCCCceEEEE
Q 007757 401 ILLAGMSDKKIVQWDMNTKEITQEY 425 (590)
Q Consensus 401 ~lvsg~~dg~I~vwDl~t~~~~~~~ 425 (590)
+-+.-+..|.|.|-++.+++++...
T Consensus 142 wsiiPttnGAVQIKnvatg~CL~t~ 166 (206)
T 1sr4_A 142 FELLPTDSGAVVIKSVSQGRCVTYN 166 (206)
T ss_dssp EEEEEBTTSCEEEEETTTCCEEEEC
T ss_pred EEEecCCCccEEEEECCCCccCCcc
Confidence 4555566788888888888888764
Done!