Query 007760
Match_columns 590
No_of_seqs 42 out of 44
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 09:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.4 0.048 1.6E-06 46.7 25.4 27 25-51 13-39 (284)
2 1i84_S Smooth muscle myosin he 97.1 0.00046 1.6E-08 77.0 6.5 50 292-342 1113-1163(1184)
3 1c1g_A Tropomyosin; contractIl 97.0 0.14 4.7E-06 43.9 33.1 51 27-77 8-58 (284)
4 1i84_S Smooth muscle myosin he 96.9 0.0011 3.7E-08 74.1 7.3 43 298-341 1091-1134(1184)
5 2dfs_A Myosin-5A; myosin-V, in 93.5 1 3.4E-05 51.0 14.8 96 140-262 958-1053(1080)
6 3vkg_A Dynein heavy chain, cyt 93.4 5.5 0.00019 50.2 21.9 179 27-229 1901-2098(3245)
7 3vkg_A Dynein heavy chain, cyt 89.2 9.4 0.00032 48.2 17.9 100 153-266 1903-2007(3245)
8 3oja_B Anopheles plasmodium-re 83.0 20 0.00067 36.0 13.7 76 138-230 505-580 (597)
9 2dfs_A Myosin-5A; myosin-V, in 81.9 26 0.0009 39.8 15.6 65 188-265 978-1042(1080)
10 3na7_A HP0958; flagellar bioge 71.6 67 0.0023 30.1 15.1 17 232-248 169-185 (256)
11 1f5n_A Interferon-induced guan 68.9 70 0.0024 34.2 13.9 78 175-261 499-582 (592)
12 2v71_A Nuclear distribution pr 61.5 1.1E+02 0.0038 28.9 16.6 89 188-311 82-170 (189)
13 3mxz_A Tubulin-specific chaper 61.4 46 0.0016 29.2 9.0 76 150-229 13-88 (116)
14 2zqm_A Prefoldin beta subunit 61.1 66 0.0022 26.2 9.5 69 238-312 12-94 (117)
15 3hnw_A Uncharacterized protein 60.2 26 0.00089 31.2 7.4 54 28-81 78-131 (138)
16 1deq_A Fibrinogen (alpha chain 59.4 87 0.003 32.8 12.0 90 140-231 65-157 (390)
17 2v4h_A NF-kappa-B essential mo 56.2 1.1E+02 0.0037 27.3 10.4 39 24-62 23-61 (110)
18 3nmd_A CGMP dependent protein 54.7 33 0.0011 28.5 6.6 47 27-73 21-67 (72)
19 3oja_B Anopheles plasmodium-re 53.5 1.8E+02 0.0061 29.2 12.9 36 130-165 518-560 (597)
20 3mq9_A Bone marrow stromal ant 52.4 1.8E+02 0.0062 28.6 13.9 51 152-202 359-412 (471)
21 1fxk_A Prefoldin; archaeal pro 52.0 57 0.002 26.2 7.6 39 237-275 6-44 (107)
22 2b9c_A Striated-muscle alpha t 50.9 45 0.0016 30.0 7.4 88 218-319 17-104 (147)
23 2oqq_A Transcription factor HY 50.6 20 0.00067 27.5 4.2 27 182-208 12-38 (42)
24 3na7_A HP0958; flagellar bioge 49.5 1.7E+02 0.0058 27.4 21.6 16 243-258 154-169 (256)
25 1fxk_C Protein (prefoldin); ar 48.3 54 0.0018 27.7 7.2 83 182-268 3-117 (133)
26 1gu4_A CAAT/enhancer binding p 48.1 1.1E+02 0.0037 25.3 8.7 64 149-212 12-75 (78)
27 1hjb_A Ccaat/enhancer binding 46.7 1.2E+02 0.0042 25.5 8.9 63 150-212 13-75 (87)
28 3hnw_A Uncharacterized protein 46.1 67 0.0023 28.6 7.7 61 23-83 66-126 (138)
29 3ajw_A Flagellar FLIJ protein; 43.9 1.4E+02 0.0048 24.8 12.9 73 225-315 19-94 (150)
30 1ci6_A Transcription factor AT 42.0 29 0.001 27.1 4.2 30 180-209 30-59 (63)
31 1go4_E MAD1 (mitotic arrest de 37.1 59 0.002 28.2 5.7 57 247-312 27-92 (100)
32 3mlg_A Putative uncharacterize 36.7 31 0.0011 32.9 4.2 87 1-89 1-143 (189)
33 4emc_A Monopolin complex subun 36.7 82 0.0028 30.2 7.1 59 26-85 21-80 (190)
34 1m1j_B Fibrinogen beta chain; 35.7 60 0.002 34.3 6.6 61 13-73 88-148 (464)
35 1l8d_A DNA double-strand break 35.2 99 0.0034 25.2 6.6 20 240-259 65-84 (112)
36 3lhp_S 4E10_D0_1ISEA_004_N (T9 35.1 2.5E+02 0.0086 25.3 10.5 92 55-167 17-122 (123)
37 3htk_A Structural maintenance 34.7 1.4E+02 0.0048 22.2 7.2 52 21-72 1-52 (60)
38 3ol1_A Vimentin; structural ge 34.4 2.2E+02 0.0076 24.4 12.0 37 181-217 77-113 (119)
39 1m1j_A Fibrinogen alpha subuni 34.3 4.7E+02 0.016 28.2 13.2 93 139-233 62-157 (491)
40 2lw1_A ABC transporter ATP-bin 31.3 36 0.0012 27.7 3.3 46 216-265 30-75 (89)
41 1gd2_E Transcription factor PA 29.5 78 0.0027 25.7 4.9 25 182-206 45-69 (70)
42 3a7p_A Autophagy protein 16; c 29.1 3.5E+02 0.012 25.1 11.0 78 138-221 64-145 (152)
43 1gk4_A Vimentin; intermediate 28.7 1.2E+02 0.0039 24.7 5.9 13 183-195 4-16 (84)
44 1qsd_A Protein (beta-tubulin b 28.6 2.7E+02 0.0094 23.9 8.4 70 152-231 11-80 (106)
45 2p22_A Suppressor protein STP2 27.8 2.8E+02 0.0095 25.9 8.9 102 40-160 35-140 (174)
46 3mov_A Lamin-B1; LMNB1, B-type 27.2 2.1E+02 0.0073 24.1 7.4 68 182-263 14-82 (95)
47 3oja_A Leucine-rich immune mol 26.5 4.7E+02 0.016 25.7 14.0 46 133-178 433-478 (487)
48 3q8t_A Beclin-1; autophagy, AT 26.2 2.2E+02 0.0076 23.8 7.3 46 28-73 7-52 (96)
49 1dh3_A Transcription factor CR 25.9 1.9E+02 0.0066 22.1 6.3 21 182-202 31-51 (55)
50 3ol1_A Vimentin; structural ge 25.9 3.1E+02 0.011 23.5 10.4 45 17-61 6-57 (119)
51 1ic2_A Tropomyosin alpha chain 25.1 1.9E+02 0.0066 23.1 6.5 57 21-84 16-72 (81)
52 3a7p_A Autophagy protein 16; c 24.9 2.4E+02 0.0081 26.2 7.8 41 32-72 68-108 (152)
53 3tnu_B Keratin, type II cytosk 24.0 3.4E+02 0.012 23.2 10.7 71 133-203 34-105 (129)
54 2eqb_B RAB guanine nucleotide 23.9 1.5E+02 0.0052 25.7 5.9 31 22-52 2-32 (97)
55 3tnu_A Keratin, type I cytoske 23.5 3.5E+02 0.012 23.2 10.1 71 133-203 36-107 (131)
56 3q8t_A Beclin-1; autophagy, AT 23.1 3.3E+02 0.011 22.8 8.7 61 182-266 27-87 (96)
57 3mq7_A Bone marrow stromal ant 22.2 2.6E+02 0.009 25.2 7.3 61 25-85 32-96 (121)
58 3tnu_A Keratin, type I cytoske 22.1 2.3E+02 0.008 24.3 6.9 26 239-264 77-102 (131)
59 2no2_A HIP-I, huntingtin-inter 21.7 1.5E+02 0.0052 25.5 5.5 67 249-328 25-91 (107)
60 3ghg_A Fibrinogen alpha chain; 21.0 4.6E+02 0.016 28.7 10.1 42 190-233 113-156 (562)
61 3iyk_A VP5; icosahedral virus; 21.0 5.8E+02 0.02 27.8 10.8 146 4-201 65-210 (526)
62 3tnu_B Keratin, type II cytosk 20.9 3.9E+02 0.013 22.8 8.2 17 240-256 76-92 (129)
63 1uii_A Geminin; human, DNA rep 20.2 1.7E+02 0.0059 24.9 5.5 32 180-211 39-70 (83)
64 2zrr_A Mundticin KS immunity p 20.0 1.3E+02 0.0044 27.1 4.9 31 180-210 43-83 (118)
65 2yy0_A C-MYC-binding protein; 20.0 1.2E+02 0.0041 23.3 4.1 28 180-207 19-46 (53)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.42 E-value=0.048 Score=46.67 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=12.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007760 25 LELNRLQNQLKEKDRELADAQGEIKAL 51 (590)
Q Consensus 25 ~ELnRLeN~lreKdRELg~A~aEIKaL 51 (590)
.++..+...+.+...++..+..++..+
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~ 39 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRSKQL 39 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.12 E-value=0.00046 Score=77.02 Aligned_cols=50 Identities=28% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHHHHHHHhhhCCC
Q 007760 292 QWLEERRLLQAEMQRLKDKLAISE-RTAKAEAQLKEKLKLRLKTLEEGLKHV 342 (590)
Q Consensus 292 qWLEERR~lQgEmQ~LrDKLAiaE-RtAKaEaQLkeKlklRLK~LEE~Lk~~ 342 (590)
+.-.+..-++.+++.|.+.|.-.+ +-.+.+.| .+.++..+..|.+.|...
T Consensus 1113 ~le~~l~~Le~eie~L~eeLee~~~~~~~le~q-~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQ-KRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 333444456677777766654322 11222332 235566667777666654
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.00 E-value=0.14 Score=43.86 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh
Q 007760 27 LNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLR 77 (590)
Q Consensus 27 LnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~ 77 (590)
+.-|+.++......+.....+|..++..-.--...+.++..++..+...+.
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (284)
T 1c1g_A 8 MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELD 58 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555444433333444444444444433333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.94 E-value=0.0011 Score=74.10 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHHHHHHHhhhCC
Q 007760 298 RLLQAEMQRLKDKLAISER-TAKAEAQLKEKLKLRLKTLEEGLKH 341 (590)
Q Consensus 298 R~lQgEmQ~LrDKLAiaER-tAKaEaQLkeKlklRLK~LEE~Lk~ 341 (590)
.-++.++++|+.++.-.+. -...+.++ .+++.++..|++.|..
T Consensus 1091 ~~le~el~~l~~~le~l~~~~~~le~~l-~~Le~eie~L~eeLee 1134 (1184)
T 1i84_S 1091 AKKEEELQAALARLEDETSQKNNALKKI-RELESHISDLQEDLES 1134 (1184)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3345555555555442221 12222222 2345555555555544
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.50 E-value=1 Score=51.00 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=59.7
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHH
Q 007760 140 YKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEK 219 (590)
Q Consensus 140 ~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEK 219 (590)
.-+|+.+||.|...|+.+.+.++.+- .-|.+++.+..+|.++++-...|.+-|+..+-|=- +.
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~--------------~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~ 1020 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNAT--------------NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HE 1020 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 34688899988888888655554221 33678888888888888888888888866553221 24
Q ss_pred HHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHH
Q 007760 220 LSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLEREL 262 (590)
Q Consensus 220 LsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeREL 262 (590)
|.+.|..|++. ..-.+.|+.+|+....+.+.++
T Consensus 1021 L~~kv~~L~~e----------~~~L~qq~~~l~~~~~~~~~~~ 1053 (1080)
T 2dfs_A 1021 TEQLVSELKEQ----------NTLLKTEKEELNRRIHDQAKEI 1053 (1080)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555542 2234555555555555555443
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.35 E-value=5.5 Score=50.17 Aligned_cols=179 Identities=17% Similarity=0.236 Sum_probs=79.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHhh----hhhhhhhhhHhhhhccc-----cccccc
Q 007760 27 LNRLQNQLKEKDRELADAQGEIK----ALRATEVLKDKAIEELRNEFG----KIDGKLRVTQNVLEHRN-----LEIKKV 93 (590)
Q Consensus 27 LnRLeN~lreKdRELg~A~aEIK----aLr~tE~lkdKAveEl~~el~----K~deKL~~~E~lle~KN-----LEiKkl 93 (590)
|+-..+.+.+|..|+...+.-+. -|.-+. .-|++|..+|. .+.+|-+.++.+|+.-. .+-+|-
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~----~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~ 1976 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTE----AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQK 1976 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777766543322 222222 22344444443 33333334444443311 111111
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHH
Q 007760 94 TGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILR 173 (590)
Q Consensus 94 ~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~ 173 (590)
.-++..+-++.-++|+.-++--+-..=++..|+ +|+.+++..+..+.++.++.-.+.+.-.+.-|.-|.+-..-..
T Consensus 1977 ~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa----~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1977 DARELQVQLDVRNKEIAVQKVKAYADLEKAEPT----GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122233344455555555555554566676 9998888887777766665554444433333333332222222
Q ss_pred HHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHH------HHHHHHhhHHHHHH
Q 007760 174 SALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVL------EVEKLSGTIKELEE 229 (590)
Q Consensus 174 sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~------EVEKLsqTi~ELEE 229 (590)
.+ ..+-+.|+.+++.|+. |+.|-.-+ |=+.-++++.+|++
T Consensus 2053 ~~----------~~ek~~L~~e~~~~~~------kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2053 TL----------IRETEQIKTESSKVKN------KVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HH----------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 22 2233455666666653 33333222 33345566666664
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.18 E-value=9.4 Score=48.17 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=71.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH----HHhHHHHhhhhHHHHHHHHHHHHHhH-HHHHhhhhhHHHHHHHHhhHHHH
Q 007760 153 ALQRHTKAKEMALLEAEKILRSALER----ALIVEEVQNLNFELKRQIEICQEENR-ILEKTNRQKVLEVEKLSGTIKEL 227 (590)
Q Consensus 153 ALeRltKsKEaALlEAeril~sAl~k----A~iVedvQN~N~EL~kQiEIcqEENk-iLeK~hRQKV~EVEKLsqTi~EL 227 (590)
..-.|...|-..+.+..+-++..|.| +..|+++|.+=.+++.+++.-++|.. +|+++..++ .++|+-...+.+.
T Consensus 1903 ~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~-~~ae~~k~~v~~~ 1981 (3245)
T 3vkg_A 1903 QVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ-QAAEIKQKDAREL 1981 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34456677777788888888888876 77899999999999999988887765 788887665 3567666666666
Q ss_pred HHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 007760 228 EEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVK 266 (590)
Q Consensus 228 EEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaK 266 (590)
|+.+ +.|..+.++.|..-|.+||.|.
T Consensus 1982 ~~~~-------------~~~~~ei~~~k~~~e~dL~~A~ 2007 (3245)
T 3vkg_A 1982 QVQL-------------DVRNKEIAVQKVKAYADLEKAE 2007 (3245)
T ss_dssp HHHH-------------HHHHHHHHHHHHHHHHCC----
T ss_pred HHHH-------------HHHHHHHHHHHHHHHHHHhhcC
Confidence 6543 2355677778888888888875
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.02 E-value=20 Score=36.04 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=36.0
Q ss_pred hhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHH
Q 007760 138 KTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEV 217 (590)
Q Consensus 138 K~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EV 217 (590)
.....++.+++++...+++-...-+ +..-++-...+.++++..++.++++..++... .+. -|.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~---~l~----~e~ 567 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARR----------TEADAKQKETEDLEQENIALEKQLDNKRAKQA---ELR----QET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHH----------HhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH---HHH----HHH
Confidence 4455556666655555444322211 11112223345666666777666665444332 222 234
Q ss_pred HHHHhhHHHHHHH
Q 007760 218 EKLSGTIKELEEA 230 (590)
Q Consensus 218 EKLsqTi~ELEEa 230 (590)
..+.+.+.+|++.
T Consensus 568 ~~~~~~~~~l~~~ 580 (597)
T 3oja_B 568 SLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555553
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.94 E-value=26 Score=39.78 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhh
Q 007760 188 LNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARV 265 (590)
Q Consensus 188 ~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARa 265 (590)
.+.+++.++.-.++|..-|++-...-.-|.+.|.+.+.++. -+-+.+++.|.+|+..|+..+...
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~-------------~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK-------------HETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455554444433333333333333333333 255677777777777777766543
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.65 E-value=67 Score=30.13 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=10.9
Q ss_pred HhccchhhhHHHHHHHH
Q 007760 232 LAGGSAANAIRDYQRQI 248 (590)
Q Consensus 232 LAgGaaANAvrdYqrq~ 248 (590)
|+++.-+.-+..|.+..
T Consensus 169 l~~~i~~~lL~~Yerir 185 (256)
T 3na7_A 169 LVEKTEPKIYSFYERIR 185 (256)
T ss_dssp HHHTSCHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 44556667777887654
No 11
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.91 E-value=70 Score=34.15 Aligned_cols=78 Identities=27% Similarity=0.354 Sum_probs=53.0
Q ss_pred HHHHHHhHHHHhhhhHHHHHHHHHHHHHhH--HHHHhhh---hhHHHHHH-HHhhHHHHHHHHHhccchhhhHHHHHHHH
Q 007760 175 ALERALIVEEVQNLNFELKRQIEICQEENR--ILEKTNR---QKVLEVEK-LSGTIKELEEAVLAGGSAANAIRDYQRQI 248 (590)
Q Consensus 175 Al~kA~iVedvQN~N~EL~kQiEIcqEENk--iLeK~hR---QKV~EVEK-LsqTi~ELEEaiLAgGaaANAvrdYqrq~ 248 (590)
|-..+.+.++.|.+++..|++-+...+||- +-+||.+ |-+.|.+. |.+.+.|-++ .|--| |+.++
T Consensus 499 ~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~-~~~~g--------~~~~~ 569 (592)
T 1f5n_A 499 AQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ-LLKEG--------FQKES 569 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHT--------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--------HHHHH
Confidence 445567889999999999999888888874 3345543 33444443 3344444433 33334 88899
Q ss_pred HHHHHHHhHHHHH
Q 007760 249 TELNEEKRTLERE 261 (590)
Q Consensus 249 ~elnEEkrtLeRE 261 (590)
..|+.|...|.+.
T Consensus 570 ~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 570 RIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998888887
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.47 E-value=1.1e+02 Score=28.95 Aligned_cols=89 Identities=22% Similarity=0.293 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 007760 188 LNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKV 267 (590)
Q Consensus 188 ~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKV 267 (590)
...+..++|.-.|.|.--|-.++++=-.-|-+|-|.=..||-+. -++...+-|++.+....-|..--||-||.
T Consensus 82 ~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~---R~~~~SleD~e~kln~aiEr~alLE~El~---- 154 (189)
T 2v71_A 82 QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK---RATIMSLEDFEQRLNQAIERNAFLESELD---- 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 33344444666666666666555555555555555555555543 33556677788777777777777777773
Q ss_pred ccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHH
Q 007760 268 SANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKL 311 (590)
Q Consensus 268 saNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKL 311 (590)
|+--|+.++|||||-+
T Consensus 155 ----------------------------EKe~l~~~~QRLkdE~ 170 (189)
T 2v71_A 155 ----------------------------EKESLLVSVQRLKDEA 170 (189)
T ss_dssp ----------------------------HHHHHHCCC-------
T ss_pred ----------------------------HHHHHHHHHHHHHHHH
Confidence 5667888899998865
No 13
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=61.38 E-value=46 Score=29.22 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=52.0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHH
Q 007760 150 DKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEE 229 (590)
Q Consensus 150 DnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEE 229 (590)
--.++.||.|-+..---|+..--.- + ..|..| .+..+.|++|.++++|=.+.|--+++.=..-|.+|.+.|.+.++
T Consensus 13 ktg~vkRL~KE~~~Y~kE~~~q~~k-i--ekmk~e-~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~~ 88 (116)
T 3mxz_A 13 KTSTCKRIVKELHSYEKEVEREAAK-T--ADMKDK-GADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELEE 88 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHhc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467888888777666665421110 0 112222 35679999999999999999999988766667777777766654
No 14
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=61.09 E-value=66 Score=26.18 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccc-------------hhHHHHHHhh-hhHHH
Q 007760 238 ANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVM-------------PVRQWLEERR-LLQAE 303 (590)
Q Consensus 238 ANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvM-------------PVKqWLEERR-~lQgE 303 (590)
.|.+..|+.+++.+...+..|++++.....+.+-+-.+- ++.+|+ -+...|++|. ++..+
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~------~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~ 85 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP------DDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVR 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999887766655542 222332 2345565553 46666
Q ss_pred HHHHHHHHH
Q 007760 304 MQRLKDKLA 312 (590)
Q Consensus 304 mQ~LrDKLA 312 (590)
|..|..++.
T Consensus 86 i~~le~~~~ 94 (117)
T 2zqm_A 86 LNALERQEK 94 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666653
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.24 E-value=26 Score=31.25 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHh
Q 007760 28 NRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQN 81 (590)
Q Consensus 28 nRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~ 81 (590)
..|+.++.++++|+-.-.-|+..++.--.--.+-+++|.+++..+.+++.-+|.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333334444444444444444444443
No 16
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.43 E-value=87 Score=32.81 Aligned_cols=90 Identities=20% Similarity=0.327 Sum_probs=50.4
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhh-hHHHHHHHHHHHHHhHHHHHhhhhhHHH--
Q 007760 140 YKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNL-NFELKRQIEICQEENRILEKTNRQKVLE-- 216 (590)
Q Consensus 140 ~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~-N~EL~kQiEIcqEENkiLeK~hRQKV~E-- 216 (590)
++..|..|......+.+..++--......-.+++--++-|.=-|.+-|+ +.+|.+||++.|+ +|-+.+.+-+||.
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~--~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRR--KVIEQVQRINLLQKN 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHH
Confidence 3344444444444444444443333344444455444444333333222 4588999988876 4555555556654
Q ss_pred HHHHHhhHHHHHHHH
Q 007760 217 VEKLSGTIKELEEAV 231 (590)
Q Consensus 217 VEKLsqTi~ELEEai 231 (590)
|+.+.-.|+.||-+|
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 678888888888888
No 17
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=56.23 E-value=1.1e+02 Score=27.27 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=29.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 007760 24 VLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAI 62 (590)
Q Consensus 24 ~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAv 62 (590)
.+|++-|...|...+.-|..-+.+|..|+..-+.+++++
T Consensus 23 ~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 23 SMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888888877776555544444
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.74 E-value=33 Score=28.49 Aligned_cols=47 Identities=36% Similarity=0.377 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 007760 27 LNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKID 73 (590)
Q Consensus 27 LnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~d 73 (590)
+-.||-.|+.|+.||-.-..-|+.|-.-=.-||.-|.+|..+|.|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77899999999999988888888887777778888888888888764
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.55 E-value=1.8e+02 Score=29.17 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=15.6
Q ss_pred hccchhhHhhHHHHHH-------HhhhhHHHHHHHhhhhHHHH
Q 007760 130 LAPLEADIKTYKKEIA-------ALQEDKKALQRHTKAKEMAL 165 (590)
Q Consensus 130 iAPLEAeiK~~r~EIa-------~LQdDnkALeRltKsKEaAL 165 (590)
+++++.++...++++. .|+.+...|++.+......+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 3444444444444443 33344444444444433333
No 20
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.39 E-value=1.8e+02 Score=28.56 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=42.9
Q ss_pred HHHHHHh---hhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHH
Q 007760 152 KALQRHT---KAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEE 202 (590)
Q Consensus 152 kALeRlt---KsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEE 202 (590)
.++..+. ++-+.||-++...++.+|.+.....+..|-+..|.+||.-+|.-
T Consensus 359 ~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~ 412 (471)
T 3mq9_A 359 TAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKG 412 (471)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhh
Confidence 3444443 45689999999999999999999999999999999999988763
No 21
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.01 E-value=57 Score=26.22 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhh
Q 007760 237 AANAIRDYQRQITELNEEKRTLERELARVKVSANRVATV 275 (590)
Q Consensus 237 aANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~v 275 (590)
.+|....+|.+++.+...+..|++++.....+.+-+..+
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l 44 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRA 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 368889999999999999999999999988777666554
No 22
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=50.90 E-value=45 Score=30.03 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=66.6
Q ss_pred HHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchhHHHHHHh
Q 007760 218 EKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEER 297 (590)
Q Consensus 218 EKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEER 297 (590)
+.|+.+...|++|-=+.--.-.+.+-+.+.-..-.+....||.+|.-|+-.|. +...|.-.|-++|-
T Consensus 17 erl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~ae-----------eadrKyeE~~RKl~-- 83 (147)
T 2b9c_A 17 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE-----------DADRKYEEVARKLV-- 83 (147)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHHHH--
Confidence 45777777888876666666677777777777777777899999998886654 55566778877774
Q ss_pred hhhHHHHHHHHHHHHHhHHhHH
Q 007760 298 RLLQAEMQRLKDKLAISERTAK 319 (590)
Q Consensus 298 R~lQgEmQ~LrDKLAiaERtAK 319 (590)
++.++..+.-++...+|...+
T Consensus 84 -~~E~dLeraeeRae~aE~k~~ 104 (147)
T 2b9c_A 84 -IIESDLERAEERAELSEGKCA 104 (147)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 788999988888888877655
No 23
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=50.64 E-value=20 Score=27.46 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=24.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 007760 182 VEEVQNLNFELKRQIEICQEENRILEK 208 (590)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK 208 (590)
|.|++++|-||...|-..|-||-.|.+
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 679999999999999999999987744
No 24
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=49.46 E-value=1.7e+02 Score=27.40 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhHH
Q 007760 243 DYQRQITELNEEKRTL 258 (590)
Q Consensus 243 dYqrq~~elnEEkrtL 258 (590)
....++..+..++..|
T Consensus 154 e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 154 NIKETQQIIFKKKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 25
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=48.33 E-value=54 Score=27.69 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=63.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHH--H-----------------------H--Hhc
Q 007760 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEE--A-----------------------V--LAG 234 (590)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEE--a-----------------------i--LAg 234 (590)
+..++.+-+.|..+++-++..-.-| +.++.|++++-.+|..|.. . + |.+
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l----~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~ 78 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAV----RATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence 4566777778888888888776665 5678889998888888873 1 1 112
Q ss_pred c-----chhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 007760 235 G-----SAANAIRDYQRQITELNEEKRTLERELARVKVS 268 (590)
Q Consensus 235 G-----aaANAvrdYqrq~~elnEEkrtLeRELARaKVs 268 (590)
| ....|+.+|.+++..+.+...+|+..++..+-.
T Consensus 79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~ 117 (133)
T 1fxk_C 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 246799999999999999999999999866543
No 26
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.12 E-value=1.1e+02 Score=25.30 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=47.0
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 007760 149 EDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQ 212 (590)
Q Consensus 149 dDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQ 212 (590)
+|..=.+|-.+-.+||=--=+..=.-..+.+.=|++|...|..|+.+|+....|...|-.+-.|
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666555555555667777889999999999999999999999888766443
No 27
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.68 E-value=1.2e+02 Score=25.45 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=44.2
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhh
Q 007760 150 DKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQ 212 (590)
Q Consensus 150 DnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQ 212 (590)
|..=.+|--+-.+||=--=+..=.-..+.+.=|+.|...|..|+.+|+....|...|-.+-.|
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556655444444445556667778999999999999999999888877766554
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.11 E-value=67 Score=28.60 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=44.5
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhh
Q 007760 23 VVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVL 83 (590)
Q Consensus 23 v~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~ll 83 (590)
+..||-.++.+......++.+-..||..|+.--.--+-.++++..++.++.+++..++..+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777778877777666666677777777777777777666543
No 29
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=43.85 E-value=1.4e+02 Score=24.85 Aligned_cols=73 Identities=11% Similarity=0.250 Sum_probs=46.4
Q ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchhHHHHHHhhhh---H
Q 007760 225 KELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLL---Q 301 (590)
Q Consensus 225 ~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~l---Q 301 (590)
.+.+++-.+=|.+-..+..|+.++..|...+.... +.|.+.....|++.+|..=..|+ .
T Consensus 19 ~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~------------------~~~~~~~~~g~~~~~l~~~~~fi~~L~ 80 (150)
T 3ajw_A 19 KEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYR------------------SNLNTDMGNGIASNRWINYQQFIQTLE 80 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HTCC--CCSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 44566666667777788888888888887776554 45555556667888787666663 3
Q ss_pred HHHHHHHHHHHHhH
Q 007760 302 AEMQRLKDKLAISE 315 (590)
Q Consensus 302 gEmQ~LrDKLAiaE 315 (590)
..|.+.+..++.++
T Consensus 81 ~~I~~q~~~l~~~~ 94 (150)
T 3ajw_A 81 KAIEQHRLQLTQWT 94 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555444
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.01 E-value=29 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=25.9
Q ss_pred HhHHHHhhhhHHHHHHHHHHHHHhHHHHHh
Q 007760 180 LIVEEVQNLNFELKRQIEICQEENRILEKT 209 (590)
Q Consensus 180 ~iVedvQN~N~EL~kQiEIcqEENkiLeK~ 209 (590)
.=|++|...|.+|..+|.-.+.|+..|-.+
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999888543
No 31
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.12 E-value=59 Score=28.25 Aligned_cols=57 Identities=33% Similarity=0.470 Sum_probs=30.7
Q ss_pred HHHHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccc-----hhHHHHHHh----hhhHHHHHHHHHHHH
Q 007760 247 QITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVM-----PVRQWLEER----RLLQAEMQRLKDKLA 312 (590)
Q Consensus 247 q~~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvM-----PVKqWLEER----R~lQgEmQ~LrDKLA 312 (590)
.-..|.+++..||-+|.+.- +.+++-..+-||. |.-.=.+.+ --||.|+++||.++.
T Consensus 27 E~~rLr~~~~~LE~~Le~~~---------l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 27 ERSRLEEEKRMLEAQLERRA---------LQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---------CCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh---------hccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777775521 3345555566665 554433332 236666666655443
No 32
>3mlg_A Putative uncharacterized protein, linker, putativ uncharacterized protein; knot, designed protein, fusion protein, chimera protein; 2.29A {Helicobacter pylori}
Probab=36.71 E-value=31 Score=32.95 Aligned_cols=87 Identities=22% Similarity=0.317 Sum_probs=48.2
Q ss_pred CCCccc-ccccch-----hhhhhcCC-CchhHhhhhhHH-------HHHHHHHHHHH-HHHHHHHH--------HhhHHH
Q 007760 1 MVGFDE-LKLGGV-----EELSLAHP-DPVVLELNRLQN-------QLKEKDRELAD-AQGEIKAL--------RATEVL 57 (590)
Q Consensus 1 ~~~~~e-~~~gg~-----~e~~~~~s-DPv~~ELnRLeN-------~lreKdRELg~-A~aEIKaL--------r~tE~l 57 (590)
|+.|.. .+..|. -|+++|++ +-|.-||-++=- .+.++. +.+ -...|+++ ++-.+.
T Consensus 1 ~~~~~d~diF~GsPk~Kf~dIIfhAn~~lv~~ELEkllerlAamE~llEe~g--~eE~~~~~~~~~~~d~e~~d~I~~~~ 78 (189)
T 3mlg_A 1 MRDYSELEIFEGNPLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKED--LEEKFESFAKALRIDEELQQKIESRK 78 (189)
T ss_dssp ------------CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHGGGGTCHHHHHHHHHHH
T ss_pred CCCchHHHHHcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHhhhHhhHHHHHHHc
Confidence 566665 788887 34555554 555566655422 222221 111 24567777 455666
Q ss_pred HHHHHHH---------------------------------HHHHhhhhhhhhhhhHhhhhccccc
Q 007760 58 KDKAIEE---------------------------------LRNEFGKIDGKLRVTQNVLEHRNLE 89 (590)
Q Consensus 58 kdKAveE---------------------------------l~~el~K~deKL~~~E~lle~KNLE 89 (590)
.|-+|+= +.+||.++=+++-++|.+||.++|+
T Consensus 79 ~dL~Ie~mg~ILs~~~~~~~~~gsP~eKw~eIi~hAn~~lv~~ELEkller~Aame~lLE~~gl~ 143 (189)
T 3mlg_A 79 TDIVIQSMANILSGSGSGSGSSGNPLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDLE 143 (189)
T ss_dssp HHHHHHHHHHHHHC--------CHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHccCCCCCCCCCChHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 6667764 6789999999999999999998764
No 33
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.70 E-value=82 Score=30.21 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=42.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhc
Q 007760 26 ELNRLQNQLKEKDRELADAQGEIKALRA-TEVLKDKAIEELRNEFGKIDGKLRVTQNVLEH 85 (590)
Q Consensus 26 ELnRLeN~lreKdRELg~A~aEIKaLr~-tE~lkdKAveEl~~el~K~deKL~~~E~lle~ 85 (590)
.+..|+++....-.+|.....||++|+- -..++... ..+...+.+..|-..+++.+++.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~-~~~~~~~~~~~e~i~i~~DL~e~ 80 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV-KELKTQTSQQAENSEVIKDLYEY 80 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHhhhHHHHHHHH
Confidence 4567778888888888888888888776 34444444 34777777888888888888775
No 34
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.75 E-value=60 Score=34.27 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=39.0
Q ss_pred hhhhhcCCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 007760 13 EELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKID 73 (590)
Q Consensus 13 ~e~~~~~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~d 73 (590)
.+.|++..++|.-.|+-|++.|.+...--..++-=|++|..+-.-+++-+-+..+.+.+..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~ 148 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 4556677777888888888888777666666666666666665555555555444443333
No 35
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.23 E-value=99 Score=25.25 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHhHHH
Q 007760 240 AIRDYQRQITELNEEKRTLE 259 (590)
Q Consensus 240 AvrdYqrq~~elnEEkrtLe 259 (590)
.+..|+.++.++..+...|.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~ 84 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLI 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 36
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=35.08 E-value=2.5e+02 Score=25.26 Aligned_cols=92 Identities=26% Similarity=0.271 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHH-----HHHHH--------hhhccCC
Q 007760 55 EVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEA-----TLRRV--------HANLKDD 121 (590)
Q Consensus 55 E~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEA-----TLRRV--------Ha~QKDd 121 (590)
|.--|||||-+.+-+.+.+.-+++. +- +.|++..|+=+.-..+ .+|.| ...+||.
T Consensus 17 ~~~~~~~~~~~~n~~~~~~~~IRl~--------iP----TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~ 84 (123)
T 3lhp_S 17 EVRMDKAVEAFKNKLDKFKAAVRKV--------FP----TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDK 84 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS--------CC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEee--------CC----CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcC
Confidence 3445899999999999998887753 44 8888888876654333 34443 4455665
Q ss_pred CCCchhhhhccchhhHhhHHHHHHHhhhhH-HHHHHHhhhhHHHHHH
Q 007760 122 DSVPIESVLAPLEADIKTYKKEIAALQEDK-KALQRHTKAKEMALLE 167 (590)
Q Consensus 122 d~~PiEaIiAPLEAeiK~~r~EIa~LQdDn-kALeRltKsKEaALlE 167 (590)
+.. |-+.+.+..+|.+|-|+- +-+|.+++.||.-|++
T Consensus 85 eiS---------EDe~k~~e~eIQKLTDkyIkkID~ll~~KEKEIm~ 122 (123)
T 3lhp_S 85 EIN---------WFDISQSLWDVQKLTDAAIKKIEAALADMEAWLTQ 122 (123)
T ss_dssp TSC---------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443 678899999999998874 6689999999988764
No 37
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=34.72 E-value=1.4e+02 Score=22.20 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=30.5
Q ss_pred CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 007760 21 DPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKI 72 (590)
Q Consensus 21 DPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~ 72 (590)
.|+....+.|+..+.+......+-.+++..++..=..-..-+...++++.++
T Consensus 1 kP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 1 KPFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888877766666666666555543333333334444444333
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.42 E-value=2.2e+02 Score=24.41 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=29.3
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHH
Q 007760 181 IVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEV 217 (590)
Q Consensus 181 iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EV 217 (590)
.|||.-=.--+|..||+-.+||--+|.+.|-+-|.++
T Consensus 77 ~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eL 113 (119)
T 3ol1_A 77 DVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQEL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566555667899999999999999999998755544
No 39
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=34.29 E-value=4.7e+02 Score=28.19 Aligned_cols=93 Identities=25% Similarity=0.351 Sum_probs=59.6
Q ss_pred hHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhh-hHHHHHHHHHHHHHhHHHHHhhhhhHH--
Q 007760 139 TYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNL-NFELKRQIEICQEENRILEKTNRQKVL-- 215 (590)
Q Consensus 139 ~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~-N~EL~kQiEIcqEENkiLeK~hRQKV~-- 215 (590)
-.+.-|.+|.....-+.++.++--.....--.+++--++-|.=-|.+-|+ +.+|.++|++.++ +|-+.+.+-+||
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~--kVd~qi~~IrvLq~ 139 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQ--RVATQVNRIKALQN 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34445666666555555655555555555555555544444433333332 4589999998876 566666666665
Q ss_pred HHHHHHhhHHHHHHHHHh
Q 007760 216 EVEKLSGTIKELEEAVLA 233 (590)
Q Consensus 216 EVEKLsqTi~ELEEaiLA 233 (590)
-|+.+--.|+.||.+|.+
T Consensus 140 ~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 140 SIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 388999999999999975
No 40
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.28 E-value=36 Score=27.74 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHHHhhh
Q 007760 216 EVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARV 265 (590)
Q Consensus 216 EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRELARa 265 (590)
.|++|.+.|.+|++.+-..+.-+ .|| -+++++..+...++.+|..+
T Consensus 30 ~Ie~LE~~i~~le~~ladp~~y~---~d~-~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQVADASFFS---QPH-EQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGG---SCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccc---CCH-HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777765444322 233 35777777777777777643
No 41
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.47 E-value=78 Score=25.73 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHH
Q 007760 182 VEEVQNLNFELKRQIEICQEENRIL 206 (590)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiL 206 (590)
.+++++.|+.|+.||+.++.|+.+|
T Consensus 45 ~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 45 HSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4467899999999999999999875
No 42
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.11 E-value=3.5e+02 Score=25.09 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=43.9
Q ss_pred hhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH---hhhhHHHHHHHHHHHHHh-HHHHHhhhhh
Q 007760 138 KTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEV---QNLNFELKRQIEICQEEN-RILEKTNRQK 213 (590)
Q Consensus 138 K~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA~iVedv---QN~N~EL~kQiEIcqEEN-kiLeK~hRQK 213 (590)
++.++.|..|+.....|++-.+.-+..|-+=.+.++ .+-|++ |=++-.+...+..+++|| .++++.-.+|
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e------~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTE------RLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666665555554444444333332 123333 334444566777888888 5667777777
Q ss_pred HHHHHHHH
Q 007760 214 VLEVEKLS 221 (590)
Q Consensus 214 V~EVEKLs 221 (590)
--|.|++-
T Consensus 138 ~qEAe~MN 145 (152)
T 3a7p_A 138 EKETEAMN 145 (152)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 77777654
No 43
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=28.75 E-value=1.2e+02 Score=24.72 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=5.4
Q ss_pred HHHhhhhHHHHHH
Q 007760 183 EEVQNLNFELKRQ 195 (590)
Q Consensus 183 edvQN~N~EL~kQ 195 (590)
+.+.++|.-|..+
T Consensus 4 ~~l~~~~~sLE~~ 16 (84)
T 1gk4_A 4 DALKGTNESLERQ 16 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 44
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=28.60 E-value=2.7e+02 Score=23.87 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=42.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHH
Q 007760 152 KALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAV 231 (590)
Q Consensus 152 kALeRltKsKEaALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEai 231 (590)
.++.||.|-+..---|+..--. -+++ |..|=-|..+.|++|.++++|=.+.|--+++ +|...+..|++.|
T Consensus 11 g~vkRL~KE~~~Y~kE~~~q~~-riek--~k~~~~~dey~iKkq~evl~Et~~mipd~~~-------Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 11 KALKRLTKEEGYYQQELKDQEA-HVAK--LKEDKSVDPYDLKKQEEVLDDTKRLLPTLYE-------KIREFKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHCTTSCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH--HHhcCCCCHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHH
Confidence 4666777665554444422111 1111 2222124679999999999999999998887 4555555555555
No 45
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.77 E-value=2.8e+02 Score=25.94 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=57.0
Q ss_pred HHHHHHHHH-HHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhc
Q 007760 40 ELADAQGEI-KALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANL 118 (590)
Q Consensus 40 ELg~A~aEI-KaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~Q 118 (590)
.+.+.|+++ -+||.++..-.+....|..+...++.-+..++..++.-.- +..|- .+| . +.
T Consensus 35 ~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~-----~~~k~----~e~-----~---~~-- 95 (174)
T 2p22_A 35 KILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA-----NRAKV----QQF-----S---ST-- 95 (174)
T ss_dssp HTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-----HHHHH----HHH-----T---TS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH----HHH-----H---hc--
Confidence 578889988 7788887776777777777666666665555544332111 11111 111 1 11
Q ss_pred cCCCCCchhhhhccchh---hHhhHHHHHHHhhhhHHHHHHHhhh
Q 007760 119 KDDDSVPIESVLAPLEA---DIKTYKKEIAALQEDKKALQRHTKA 160 (590)
Q Consensus 119 KDdd~~PiEaIiAPLEA---eiK~~r~EIa~LQdDnkALeRltKs 160 (590)
.+.+.||++.++.|--. ++=..--|..++.|.--+|++-.+.
T Consensus 96 ~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~ 140 (174)
T 2p22_A 96 SHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHR 140 (174)
T ss_dssp SCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566899987765433 3333334555566655555555444
No 46
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=27.16 E-value=2.1e+02 Score=24.06 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHH-HhccchhhhHHHHHHHHHHHHHHHhHHHH
Q 007760 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAV-LAGGSAANAIRDYQRQITELNEEKRTLER 260 (590)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEai-LAgGaaANAvrdYqrq~~elnEEkrtLeR 260 (590)
+..+|++|.-|..+|.-... +--.+++.+..+|..||..+ =+-...+--.++|| +|..-|-.||-
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~----------~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq----~LlnvKl~Le~ 79 (95)
T 3mov_A 14 YFQGQKESRACLERIQELED----------LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYE----QLLDVKLALDM 79 (95)
T ss_dssp ----CCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_pred HHh
Q 007760 261 ELA 263 (590)
Q Consensus 261 ELA 263 (590)
|+|
T Consensus 80 EIa 82 (95)
T 3mov_A 80 EIS 82 (95)
T ss_dssp HHH
T ss_pred HHH
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.46 E-value=4.7e+02 Score=25.72 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=37.8
Q ss_pred chhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 007760 133 LEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALER 178 (590)
Q Consensus 133 LEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~k 178 (590)
.+.+.+.++.+|..|.+.+..++.+.-.=..++.+|.-+++.|..+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 5667788888999999988888888888888888888888877654
No 48
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.21 E-value=2.2e+02 Score=23.83 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 007760 28 NRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKID 73 (590)
Q Consensus 28 nRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~d 73 (590)
.-|+..|+....+=..+..|++.|-.....=+..|+.+..+...++
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444444444444333
No 49
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.87 E-value=1.9e+02 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=15.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q 007760 182 VEEVQNLNFELKRQIEICQEE 202 (590)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEE 202 (590)
|.+|+..|..|..|++..+++
T Consensus 31 v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 31 VAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888887766653
No 50
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.85 E-value=3.1e+02 Score=23.45 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=27.5
Q ss_pred hcCCCchhH------hhhhhHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHH
Q 007760 17 LAHPDPVVL------ELNRLQNQLKEKDRELADAQGEIKALRA-TEVLKDKA 61 (590)
Q Consensus 17 ~~~sDPv~~------ELnRLeN~lreKdRELg~A~aEIKaLr~-tE~lkdKA 61 (590)
+|||.|-.+ +|+.|..++.+.-.+-+....||..++. -+.+|.|-
T Consensus 6 ~~~~~~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 6 HHHSHMSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 57 (119)
T ss_dssp -------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777654 5888999998888888888888888764 23444443
No 51
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.14 E-value=1.9e+02 Score=23.11 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=35.5
Q ss_pred CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhh
Q 007760 21 DPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLE 84 (590)
Q Consensus 21 DPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle 84 (590)
|.....+..++..+++.+.....+..||.+|. +=|.-|.++|.+..++|..+..-|+
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~-------kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQ-------KKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888888888888888887764 2234444555555555544444443
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.92 E-value=2.4e+02 Score=26.22 Aligned_cols=41 Identities=29% Similarity=0.333 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 007760 32 NQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKI 72 (590)
Q Consensus 32 N~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~ 72 (590)
+.++....|+....-+|+.|...=+-|.|+++.|.+|+.-+
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL 108 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISG 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555666666666665543
No 53
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.01 E-value=3.4e+02 Score=23.20 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=48.3
Q ss_pred chhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HhHHHHhhhhHHHHHHHHHHHHHh
Q 007760 133 LEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERA-LIVEEVQNLNFELKRQIEICQEEN 203 (590)
Q Consensus 133 LEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA-~iVedvQN~N~EL~kQiEIcqEEN 203 (590)
-..||.-+|..|..|+-+--+|.-...+=|.+|.++|.-...++..+ ..+.++...=+.++..|+-...|.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888888899999988777666544 234455544445555544433333
No 54
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.86 E-value=1.5e+02 Score=25.72 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=20.7
Q ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007760 22 PVVLELNRLQNQLKEKDRELADAQGEIKALR 52 (590)
Q Consensus 22 Pv~~ELnRLeN~lreKdRELg~A~aEIKaLr 52 (590)
|+.-+|++|.-+++..+.++.+...|++.|.
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6667777777777777777777777777654
No 55
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.47 E-value=3.5e+02 Score=23.21 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=43.3
Q ss_pred chhhHhhHHHHHHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HhHHHHhhhhHHHHHHHHHHHHHh
Q 007760 133 LEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERA-LIVEEVQNLNFELKRQIEICQEEN 203 (590)
Q Consensus 133 LEAeiK~~r~EIa~LQdDnkALeRltKsKEaALlEAeril~sAl~kA-~iVedvQN~N~EL~kQiEIcqEEN 203 (590)
...||.-+|..|..|+-+--++.-...+=|.+|.|+|.-...++..+ ..+.++...=+.++..|+-...|.
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888877777777777888889888777666543 234445444444554444433333
No 56
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.07 E-value=3.3e+02 Score=22.76 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=45.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHHH
Q 007760 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERE 261 (590)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeRE 261 (590)
+.+|.+.+..|..+|+.++.|-.-|+.-..+..-+ -.+|++|..++.++...|+.-
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~e------------------------yn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQRE------------------------YSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888988888888777666555444 567888888888888888877
Q ss_pred Hhhhh
Q 007760 262 LARVK 266 (590)
Q Consensus 262 LARaK 266 (590)
+.-+.
T Consensus 83 ~~~~~ 87 (96)
T 3q8t_A 83 MRYAQ 87 (96)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 57
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.23 E-value=2.6e+02 Score=25.25 Aligned_cols=61 Identities=26% Similarity=0.318 Sum_probs=36.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHhhhhhhhhhhhHhhhhc
Q 007760 25 LELNRLQNQLKEKDRELADAQGEIKALRATEVL----KDKAIEELRNEFGKIDGKLRVTQNVLEH 85 (590)
Q Consensus 25 ~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~l----kdKAveEl~~el~K~deKL~~~E~lle~ 85 (590)
-+|++-+.-|++.+-+-..|..=+..|+.|=.- ..+-|+||..|+..+..+|.-.+.-+|.
T Consensus 32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 32 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665556666554221 1233777777777777777666555543
No 58
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.14 E-value=2.3e+02 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhh
Q 007760 239 NAIRDYQRQITELNEEKRTLERELAR 264 (590)
Q Consensus 239 NAvrdYqrq~~elnEEkrtLeRELAR 264 (590)
.++.+||.++..|..+...+-.+++|
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665555444444444443
No 59
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=21.66 E-value=1.5e+02 Score=25.46 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=46.6
Q ss_pred HHHHHHHhHHHHHHhhhhhccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 007760 249 TELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKL 328 (590)
Q Consensus 249 ~elnEEkrtLeRELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAKaEaQLkeKl 328 (590)
.++..+++.|++++.+++...+ ..-++.++.|.-+++=|+.|. +|++.|+.-+ +++..++++|..++
T Consensus 25 ~e~e~~k~eL~~~~~~~~~~~~-------~k~~eq~~~le~lk~eL~~~~---~el~~lq~~l---~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 25 VDLEREKKELEDSLERISDQGQ-------RKTQEQLEVLESLKQELATSQ---RELQVLQGSL---ETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4566778888888888883322 455677778888888888776 6777777633 55666777776665
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.02 E-value=4.6e+02 Score=28.74 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhHHH--HHHHHhhHHHHHHHHHh
Q 007760 190 FELKRQIEICQEENRILEKTNRQKVLE--VEKLSGTIKELEEAVLA 233 (590)
Q Consensus 190 ~EL~kQiEIcqEENkiLeK~hRQKV~E--VEKLsqTi~ELEEaiLA 233 (590)
.||.++|+..+++ |-..+.+-+||+ |+.+-..|+.||=+|-+
T Consensus 113 ~ELRRrIqyLKek--VdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 113 EDLRSRIEVLKRK--VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999988775 334445555654 78899999999999975
No 61
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=20.97 E-value=5.8e+02 Score=27.77 Aligned_cols=146 Identities=19% Similarity=0.148 Sum_probs=0.0
Q ss_pred cccccccchhhhhhcCCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhh
Q 007760 4 FDELKLGGVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVL 83 (590)
Q Consensus 4 ~~e~~~gg~~e~~~~~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~ll 83 (590)
|||.|---+.==.++.-||+.+=||.=|..+.-|-+||.. |-|.=++-++.-++.++.+.++|.++-.=.+.-...-
T Consensus 65 ~GesvKqAVilNV~G~~~~~pDPLsPgE~~~~~Kl~eLE~---e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e 141 (526)
T 3iyk_A 65 YGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELED---EQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAE 141 (526)
T ss_pred hHHHHHHHHHHHhcccCCCCCCCCCHhHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred hccccccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHhhhhHHHHHHHhhhhHH
Q 007760 84 EHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEM 163 (590)
Q Consensus 84 e~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~LQdDnkALeRltKsKEa 163 (590)
+...=+|+-|+ .-|++=++..+.|=..|+.=.+||.+
T Consensus 142 ~~e~~q~~~Le------------------------------------kAl~s~~~i~~~e~~~l~~L~~AL~k------- 178 (526)
T 3iyk_A 142 IEDEKQFDILN------------------------------------KAVTSYNKILTEEDLQMRRLATALQK------- 178 (526)
T ss_pred hhHHHHHHHHH------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHH-------
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHH
Q 007760 164 ALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQE 201 (590)
Q Consensus 164 ALlEAeril~sAl~kA~iVedvQN~N~EL~kQiEIcqE 201 (590)
|..+|+.-|++ ||++..++=.-|++-||+-++
T Consensus 179 -----E~~~Rt~dE~~-mi~~yr~k~~aL~~aIe~Er~ 210 (526)
T 3iyk_A 179 -----EIGERTHAETV-MVKEYRDKIDALKNAIEVERD 210 (526)
T ss_pred -----HHHhhcHHHHH-HHHHHHHHHHHHHHHHHHHHh
No 62
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.93 E-value=3.9e+02 Score=22.79 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHh
Q 007760 240 AIRDYQRQITELNEEKR 256 (590)
Q Consensus 240 AvrdYqrq~~elnEEkr 256 (590)
++.+||.++..|..+..
T Consensus 76 ~l~~~q~~i~~lE~eL~ 92 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQ 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 34444444444333333
No 63
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.25 E-value=1.7e+02 Score=24.87 Aligned_cols=32 Identities=28% Similarity=0.249 Sum_probs=26.0
Q ss_pred HhHHHHhhhhHHHHHHHHHHHHHhHHHHHhhh
Q 007760 180 LIVEEVQNLNFELKRQIEICQEENRILEKTNR 211 (590)
Q Consensus 180 ~iVedvQN~N~EL~kQiEIcqEENkiLeK~hR 211 (590)
.-.+|.-..|..|.++|+-.+||+..|.+++.
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667899999999999999999888764
No 64
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=20.04 E-value=1.3e+02 Score=27.08 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=26.3
Q ss_pred HhHHHHhh--hhHHHHHHHHHHHHHhH--------HHHHhh
Q 007760 180 LIVEEVQN--LNFELKRQIEICQEENR--------ILEKTN 210 (590)
Q Consensus 180 ~iVedvQN--~N~EL~kQiEIcqEENk--------iLeK~h 210 (590)
-+++|+++ +++.|++.+-.|++|-+ ||.+||
T Consensus 43 ~Ll~~l~~~~~~~~Lk~vL~~Y~~ELk~~~tSvPfILSRMN 83 (118)
T 2zrr_A 43 ELLDDLEIDLGNESLRKVLGSYLKKLKNEGTSVPLVLSRMN 83 (118)
T ss_dssp HHHHHHCSCSSSHHHHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcCCCCchhHHHHhh
Confidence 35678885 79999999999999976 888887
No 65
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.04 E-value=1.2e+02 Score=23.33 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=19.2
Q ss_pred HhHHHHhhhhHHHHHHHHHHHHHhHHHH
Q 007760 180 LIVEEVQNLNFELKRQIEICQEENRILE 207 (590)
Q Consensus 180 ~iVedvQN~N~EL~kQiEIcqEENkiLe 207 (590)
+=||-|+..|.+|+.+++-.++++.=|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888877777666665443
Done!