Query 007760
Match_columns 590
No_of_seqs 42 out of 44
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 09:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007760.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007760hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 66.5 18 0.0013 28.5 9.2 82 182-267 3-116 (133)
2 d2fupa1 a.47.5.1 (A:1-130) Hyp 41.1 63 0.0046 24.9 8.4 86 123-208 1-113 (130)
3 d1ivsa1 a.2.7.3 (A:797-862) Va 25.4 53 0.0038 23.5 5.0 62 24-85 3-64 (66)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 23.9 34 0.0025 24.4 3.6 29 237-265 31-59 (61)
5 d2efla1 a.238.1.4 (A:1-288) Fo 22.0 1.9E+02 0.014 23.3 14.2 20 238-257 184-203 (288)
6 d1k4ta1 a.2.8.1 (A:641-712) Eu 20.6 1.1E+02 0.0082 23.5 6.2 26 28-53 5-30 (72)
7 d1io1a_ e.32.1.1 (A:) Phase 1 18.6 34 0.0025 28.3 3.0 23 295-317 51-74 (395)
8 d1seta1 a.2.7.1 (A:1-110) Sery 17.0 1.6E+02 0.012 22.2 6.6 34 18-51 21-54 (110)
9 d1vcsa1 a.47.2.1 (A:8-96) Vesi 17.0 82 0.006 24.2 4.7 53 68-152 32-84 (89)
10 d1ydxa1 d.287.1.2 (A:1-193) Bi 16.8 39 0.0028 26.1 2.8 27 128-154 151-177 (193)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=66.55 E-value=18 Score=28.50 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=61.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHH-------Hhcc-------------------
Q 007760 182 VEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAV-------LAGG------------------- 235 (590)
Q Consensus 182 VedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEai-------LAgG------------------- 235 (590)
++++..+-+.|..+|+.++.+-.-| ++.+.|.+.+.++|..|.+.. |.+|
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l----~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~ 78 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAV----RATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecC
Confidence 4677777788888888888877666 567888999999998887531 0011
Q ss_pred ------chhhhHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 007760 236 ------SAANAIRDYQRQITELNEEKRTLERELARVKV 267 (590)
Q Consensus 236 ------aaANAvrdYqrq~~elnEEkrtLeRELARaKV 267 (590)
....|+..|.+++.+++.....|..+++..+=
T Consensus 79 g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~ 116 (133)
T d1fxkc_ 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITD 116 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12379999999999999999999888876543
No 2
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.10 E-value=63 Score=24.90 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=51.0
Q ss_pred CCchhhhhccchhhHhhHHHHHHHhh--------hhHHHHHHHhhhhHHHHHHHHHHH--HHHHHHH-------------
Q 007760 123 SVPIESVLAPLEADIKTYKKEIAALQ--------EDKKALQRHTKAKEMALLEAEKIL--RSALERA------------- 179 (590)
Q Consensus 123 ~~PiEaIiAPLEAeiK~~r~EIa~LQ--------dDnkALeRltKsKEaALlEAeril--~sAl~kA------------- 179 (590)
||-....+.=|..|+..|+.=..-|+ -|-.+|+.++..|...+...+..- |..+-.+
T Consensus 1 m~d~~~L~~~L~~e~~~~~~L~~LL~~e~~aL~~~d~~~Le~l~~~k~~ll~~l~~~~~~R~~~l~~~g~~~~~~~~~~l 80 (130)
T d2fupa1 1 MPDSPTLLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARY 80 (130)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHH
Confidence 44455566667778887775444443 466788999999988876554331 1111111
Q ss_pred ----HhHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 007760 180 ----LIVEEVQNLNFELKRQIEICQEENRILEK 208 (590)
Q Consensus 180 ----~iVedvQN~N~EL~kQiEIcqEENkiLeK 208 (590)
.--..+....++|..-+.-|++-|.+=.+
T Consensus 81 ~~~~~~~~~l~~~~~~L~~l~~~~k~~N~~Ng~ 113 (130)
T d2fupa1 81 ARERADGAELLARGDELGELLERCQQANLRNGR 113 (130)
T ss_dssp HTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123555667777777778777765433
No 3
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=25.36 E-value=53 Score=23.49 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=34.6
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHhhhhc
Q 007760 24 VLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEH 85 (590)
Q Consensus 24 ~~ELnRLeN~lreKdRELg~A~aEIKaLr~tE~lkdKAveEl~~el~K~deKL~~~E~lle~ 85 (590)
--|+.||+..+...+.++.-.+.-+.-=...+..-...|++-++.+..+..++..++..|.+
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~~ 64 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666555555544444443333323344555556677677777777777666666554
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.90 E-value=34 Score=24.45 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHhhh
Q 007760 237 AANAIRDYQRQITELNEEKRTLERELARV 265 (590)
Q Consensus 237 aANAvrdYqrq~~elnEEkrtLeRELARa 265 (590)
|++-|++-|.|+++|.+|...|..+++..
T Consensus 31 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 59 (61)
T d1uklc_ 31 AIDYIKYLQQVNHKLRQENMVLKLANQKN 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56888888999999999999998887654
No 5
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.99 E-value=1.9e+02 Score=23.33 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHhH
Q 007760 238 ANAIRDYQRQITELNEEKRT 257 (590)
Q Consensus 238 ANAvrdYqrq~~elnEEkrt 257 (590)
.+|-.+|+..+..+|..+..
T Consensus 184 ~~a~~~Y~~~v~~~n~~~~~ 203 (288)
T d2efla1 184 EDSKADYSSILQKFNHEQHE 203 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777666544
No 6
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.56 E-value=1.1e+02 Score=23.51 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007760 28 NRLQNQLKEKDRELADAQGEIKALRA 53 (590)
Q Consensus 28 nRLeN~lreKdRELg~A~aEIKaLr~ 53 (590)
..|+.-+..|...+.+|+.|+|.++.
T Consensus 5 enLq~KI~~Kk~qi~~a~~e~K~ak~ 30 (72)
T d1k4ta1 5 MNLQTKIDAKKEQLADARRDLKSAKA 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999998874
No 7
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=18.58 E-value=34 Score=28.26 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=18.8
Q ss_pred HHhhhhHHHHHHHHHHHH-HhHHh
Q 007760 295 EERRLLQAEMQRLKDKLA-ISERT 317 (590)
Q Consensus 295 EERR~lQgEmQ~LrDKLA-iaERt 317 (590)
.+|..||.|+++|++-|- |+..|
T Consensus 51 ~dr~ai~~E~~~l~~ei~~ia~~T 74 (395)
T d1io1a_ 51 SDLDSIQAEITQRLNEIDRVSGQT 74 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 389999999999999886 66543
No 8
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.04 E-value=1.6e+02 Score=22.20 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=24.3
Q ss_pred cCCCchhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007760 18 AHPDPVVLELNRLQNQLKEKDRELADAQGEIKAL 51 (590)
Q Consensus 18 ~~sDPv~~ELnRLeN~lreKdRELg~A~aEIKaL 51 (590)
-|.|+-..++-.|..+.|+...++...+++.+.+
T Consensus 21 R~~~~~ld~i~~ld~~rr~l~~~~e~l~~~rN~~ 54 (110)
T d1seta1 21 KGVALDLEALLALDREVQELKKRLQEVQTERNQV 54 (110)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556788888888888888887777776543
No 9
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.97 E-value=82 Score=24.18 Aligned_cols=53 Identities=21% Similarity=0.480 Sum_probs=35.7
Q ss_pred HhhhhhhhhhhhHhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhccchhhHhhHHHHHHHh
Q 007760 68 EFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAAL 147 (590)
Q Consensus 68 el~K~deKL~~~E~lle~KNLEiKkl~~EkK~AlAAQfAAEATLRRVHa~QKDdd~~PiEaIiAPLEAeiK~~r~EIa~L 147 (590)
-|..++..|.-++.+|++-.||+.-+..--| +++-+-|+.||.++.+|
T Consensus 32 ~l~~ie~~leEA~ell~qMelEvr~~p~s~R--------------------------------~~~~~klr~Yk~dl~~l 79 (89)
T d1vcsa1 32 MVANVEKQLEEARELLEQMDLEVREIPPQSR--------------------------------GMYSNRMRSYKQEMGKL 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTH--------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCCHHHH--------------------------------HHHHHHHHHHHHHHHHH
Confidence 3444566666677788888888776654333 34556678899999988
Q ss_pred hhhHH
Q 007760 148 QEDKK 152 (590)
Q Consensus 148 QdDnk 152 (590)
+.+-+
T Consensus 80 k~elk 84 (89)
T d1vcsa1 80 ETDFK 84 (89)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 87643
No 10
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=16.82 E-value=39 Score=26.11 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=15.6
Q ss_pred hhhccchhhHhhHHHHHHHhhhhHHHH
Q 007760 128 SVLAPLEADIKTYKKEIAALQEDKKAL 154 (590)
Q Consensus 128 aIiAPLEAeiK~~r~EIa~LQdDnkAL 154 (590)
.++.+|...|....++|..|+.-+++|
T Consensus 151 ~~l~~ld~~i~~~~~~i~~l~~~~~~l 177 (193)
T d1ydxa1 151 NTLSVFDERLENLASLIEINRKLRDEY 177 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665555544
Done!