BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007761
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/540 (48%), Positives = 347/540 (64%), Gaps = 20/540 (3%)
Query: 59 LPKTFDFTSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDI 118
LPK +D S E + ++ F N + G PFVI MPPPNVTGSLHMGHA+ +L+D
Sbjct: 3 LPKAYDPKSVEPKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDA 62
Query: 119 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178
++RY RM+G +WLPGTDHAGIATQ+VVE++L EG R +L R++F +RVW+WKE+ G
Sbjct: 63 LIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG 122
Query: 179 GTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTA 238
GTI Q+KRLGAS DW+RE FT+DE+ SRAV AF R + +GL Y+ +VNW P +T
Sbjct: 123 GTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETT 182
Query: 239 VSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298
+SDLEVE PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G
Sbjct: 183 LSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGK 241
Query: 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 358
A +P+T +PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G +
Sbjct: 242 RARIPLTEV-WIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM 300
Query: 359 --NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWF 416
V RGLDRFEAR+K E G VK+E +T+ + R G IE + QW+
Sbjct: 301 EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWW 360
Query: 417 VTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI--- 473
+ M PLAE+ L + +G++ +PER++K+ WL N+KDW ISRQLWWGH+IP WY
Sbjct: 361 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDC 420
Query: 474 ----VGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529
V + E Y+ + EA K +D DV DTWFSSALWP STLGWP+
Sbjct: 421 QAVNVPRPERYLEDPTSCEACGSPRLK--------RDEDVFDTWFSSALWPLSTLGWPE- 471
Query: 530 SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQK 589
+D K FYP +L TG+DILF WV+RM + G F G PF V LHGL+ D + +K K
Sbjct: 472 ETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSK 531
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 154/605 (25%), Positives = 264/605 (43%), Gaps = 89/605 (14%)
Query: 59 LPKTFDF-------TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGH 109
+PKT DF E +I W+++ + E+ G++ F++ PP G+LHMGH
Sbjct: 9 MPKT-DFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGH 67
Query: 110 AMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169
A+ L+D +VRY M+G ++PG D G L +E+ L +G+ R ++S EF ++
Sbjct: 68 ALNKILKDFIVRYKTMQGFYAPYVPGWDTHG----LPIEQALTKKGVDRKKMSTAEFREK 123
Query: 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229
E+ + +RLG D+ TL + A + F + +KGLIY+G V
Sbjct: 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPV 183
Query: 230 NWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFL------TIATTRPETLFGDVAL 283
WSP+ ++++++ E+EY ++ Y+ + V + I TT P T+ +VA+
Sbjct: 184 YWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAI 243
Query: 284 AVNPQ---------DEHY------------------------SQFIG-----MMAIVPMT 305
V+P+ E Y ++ G ++A P
Sbjct: 244 TVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF- 302
Query: 306 YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLF 365
R +I+ +V + GTG + +PGH +DY++ ++ LP+++ ++ G E G F
Sbjct: 303 LDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQF 362
Query: 366 RGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEK 425
G+ +A K + L E G +K + T P R + + + QWF ++ + +
Sbjct: 363 EGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQD 422
Query: 426 ALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY------IVGKEEE 479
L A+E + + +IYN + + +W ISRQ WG +PV+Y I+ KE
Sbjct: 423 ILDAIENTNFKVNWGK-TRIYN-MVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETV 480
Query: 480 YIVA-------------RNADEALEKAHQKYGK-NVEIYQDPDVLDTWFSSALWPFSTL- 524
VA R A + L + G N ++ D++D WF S L
Sbjct: 481 NHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLE 540
Query: 525 GWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV 584
P++S +P M G D W + + G P+ + HG + D +
Sbjct: 541 TRPELS-------FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEG 593
Query: 585 KKCQK 589
KK K
Sbjct: 594 KKMSK 598
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 145/584 (24%), Positives = 248/584 (42%), Gaps = 65/584 (11%)
Query: 68 EERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE + +W+ + F+ + E +G + + PP G H+GHA + +D+ RY M
Sbjct: 14 EEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTM 73
Query: 126 KGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE-LSRDEFTKRVWEWKEKYGGTITSQ 184
+G G D G+ +L VEK L + + +E + F + E Y +
Sbjct: 74 RGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAF 133
Query: 185 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
+R+ D TL+ ++ + L ++GL+Y+ +V + P T +S EV
Sbjct: 134 TERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193
Query: 245 E--YSEEPGTLYYIKY------RVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFI 296
Y E Y+++ ++ L I TT P TL G+VA AV+P+ + + +
Sbjct: 194 ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV 253
Query: 297 GMMAIV----------------------------------PMTYGRHVPIISDKYVDKEF 322
G A++ P + ++ YV +E
Sbjct: 254 GDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQED 313
Query: 323 GTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLE 382
GTG++ +P D AR GLP+L ++++G L + F+GL EA + + DL
Sbjct: 314 GTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKL--LVEPFKGLYFREANRAILRDLR 371
Query: 383 ETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF 442
GL K+E + P R + ++ WF+ ++ + ++ + P
Sbjct: 372 GRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHW-VPPHIK 430
Query: 443 EKIYNHWLSNIKDWCISRQLWWGHRIPVWYI--VGKEE-----EYIVARNADEALE--KA 493
E Y WL N+ DW +SR +WG +P+W GKEE + + AR E
Sbjct: 431 EGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDP 490
Query: 494 HQKYGKNVEIY--------QDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLET 545
H+ Y VE+ + P V+D W+ S PF++L +P + F++ +P +
Sbjct: 491 HRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAE 550
Query: 546 GHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQK 589
G D W + +G+ GS+ F +V HGLI D + +K K
Sbjct: 551 GIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSK 594
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 93/147 (63%), Gaps = 4/147 (2%)
Query: 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRH 309
PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G A +P+T
Sbjct: 3 PGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTE-VW 60
Query: 310 VPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL--NEVAGLFRG 367
+PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G + V RG
Sbjct: 61 IPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRG 120
Query: 368 LDRFEARKKLWSDLEETGLAVKKEPHT 394
LDRFEAR+K E G VK+E +T
Sbjct: 121 LDRFEARRKAVELFREAGHLVKEEDYT 147
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRH 309
PG LY ++Y V G F+ IAT RPET+F D A+AV+P+DE Y +G A +P+T
Sbjct: 3 PGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTE-VW 60
Query: 310 VPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL--NEVAGLFRG 367
+PI++D V+K+FGTG LK++P HD DY + + GL ++V+N +G + V RG
Sbjct: 61 IPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRG 120
Query: 368 LDRFEARKKLWSDLEETGLAVKKE 391
LDRFEAR+K E G VK+E
Sbjct: 121 LDRFEARRKAVELFREAGHLVKEE 144
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/425 (24%), Positives = 164/425 (38%), Gaps = 113/425 (26%)
Query: 68 EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKG 127
E ++ W+ + F+ + + + P +G LHMGH T+ D++ RY RM G
Sbjct: 31 ESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLG 90
Query: 128 RPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKR 187
+ L G D G+ + K A W + +Q+K
Sbjct: 91 KNVLQPIGWDAFGLPAEGAAVKNNTAPA----------------PWTYDNIAYMKNQLKM 134
Query: 188 LGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--- 244
LG DW+RE T + R + F L++KGL+Y+ + VNW PN QT +++ +V
Sbjct: 135 LGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDG 194
Query: 245 ----------------------EYSEE-----------PGTLYYIKYRVAGRS------- 264
Y++E P T+ ++ GRS
Sbjct: 195 CCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITF 254
Query: 265 ------DFLTIATTRPETLFGDVALAV-------------NPQ-----DEHYSQFI---- 296
+ LT+ TTRP+T G LAV NP+ DE + +
Sbjct: 255 NVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAE 314
Query: 297 -----------GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG 345
G A+ P+T G +P+ + +V E+GTG + PGHD DY A K G
Sbjct: 315 MATMEKKGVDTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYG 373
Query: 346 LPILNV-MNKDGTLNEV-------------AGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
L I V + DG+ ++ +G F GLD A + L G+ +K
Sbjct: 374 LNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKV 433
Query: 392 PHTLR 396
+ LR
Sbjct: 434 NYRLR 438
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 160/430 (37%), Gaps = 120/430 (27%)
Query: 68 EERIYNWWESQGYFKPN---FERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR 124
E + +WE +G+ K RG ++ P P +G LHMGH T+ D++ R+ R
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYP--SGDLHMGHLKNYTMGDVLARFRR 67
Query: 125 MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQ 184
M+G L G D G+ + K F +W
Sbjct: 68 MQGYEVLHPMGWDAFGLPAENAALK----------------FGVHPKDWTYANIRQAKES 111
Query: 185 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
++ +G DW RE T + + R F+++ EKGL Y+ +VNW P QT +++ +V
Sbjct: 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Query: 245 --------------------------EYSEE----------PGTLYYIKYRVAGRSD--- 265
Y+E P + ++ GRS+
Sbjct: 172 VEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAE 231
Query: 266 ----------FLTIATTRPETLFGDVALAVNPQD-------------------------- 289
+ + TTRP+TLFG L + P+
Sbjct: 232 ILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKT 291
Query: 290 ---------EHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 340
E F+G A+ P T G +PI + YV +GTG + P HD DY
Sbjct: 292 EIERQAEGREKTGVFLGAYALNPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 350
Query: 341 ARKLGLPILNVMNKDGT--------------LNEVAGLFRGLDRFEARKKLWSDLEETGL 386
ARK GLPI V+ + G + +G F G + E ++K+ + LEE GL
Sbjct: 351 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGL 410
Query: 387 AVKKEPHTLR 396
+ + LR
Sbjct: 411 GKGRVTYRLR 420
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 104/430 (24%), Positives = 160/430 (37%), Gaps = 120/430 (27%)
Query: 68 EERIYNWWESQGYFKPN---FERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR 124
E + +WE +G+ K RG ++ P P +G LHMGH T+ D++ R+ R
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYP--SGDLHMGHLKNYTMGDVLARFRR 67
Query: 125 MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQ 184
M+G L G D G+ + K F +W
Sbjct: 68 MQGYEVLHPMGWDAFGLPAENAALK----------------FGVHPKDWTYANIRQAKES 111
Query: 185 IKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
++ +G DW RE T + + R F+++ EKGL Y+ +VNW P QT +++ +V
Sbjct: 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Query: 245 --------------------------EYSEE----------PGTLYYIKYRVAGRSD--- 265
Y+E P + ++ GRS+
Sbjct: 172 VEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAE 231
Query: 266 ----------FLTIATTRPETLFGDVALAVNPQD-------------------------- 289
+ + TTRP+TLFG L + P+
Sbjct: 232 ILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKT 291
Query: 290 ---------EHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 340
E F+G A+ P T G +PI + YV +GTG + P HD DY
Sbjct: 292 EIERQAEGREKTGVFLGAYALNPAT-GERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEF 350
Query: 341 ARKLGLPILNVMNKDGT--------------LNEVAGLFRGLDRFEARKKLWSDLEETGL 386
ARK GLPI V+ + G + +G F G + E ++K+ + LEE GL
Sbjct: 351 ARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGL 410
Query: 387 AVKKEPHTLR 396
+ + LR
Sbjct: 411 GKGRVTYRLR 420
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 141/336 (41%), Gaps = 65/336 (19%)
Query: 68 EERIYNWWESQGYFKPNFERG--SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE+ W F+PN F I++ P ++G LH+GHA T+ D++ R+ RM
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 126 KGR----PTLW-LPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFT---KRVWEWKEK- 176
+G P W + G+ GIA + + K + + RD + + +W +++
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAER------IKNRDPKTIWIYRDVYKVPEEILWTFEDPI 123
Query: 177 -----YGGTITSQIKRLGASCDWTRERFT--LDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229
+ R G S DW+RE +T L S+ + F +L EKG I +G++ V
Sbjct: 124 NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRV 183
Query: 230 NWSPNLQTAVSDLEVEYSEEPGTLYYI----KYRVAGRSDFLTIATTRPETLFGDVALAV 285
W P + T + D ++ E+ L YI + R G +L AT RPET++G + V
Sbjct: 184 RWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV 243
Query: 286 NP-----------QDEHYSQFIGMMAIVPMTY--------------------------GR 308
NP +D+ + + A +++ G
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGD 303
Query: 309 HVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKL 344
V I+ ++VD + TGV+ P H D++ L
Sbjct: 304 EVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDL 339
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 141/336 (41%), Gaps = 65/336 (19%)
Query: 68 EERIYNWWESQGYFKPNFERG--SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRM 125
EE+ W F+PN F I++ P ++G LH+GHA T+ D++ R+ RM
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 126 KGR----PTLW-LPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFT---KRVWEWKEK- 176
+G P W + G+ GIA + + K + + RD + + +W +++
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAER------IKNRDPKTIWIYRDVYKVPEEILWTFEDPI 123
Query: 177 -----YGGTITSQIKRLGASCDWTRERFT--LDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229
+ R G S DW+RE +T L S+ + F +L EKG I +G++ V
Sbjct: 124 NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRV 183
Query: 230 NWSPNLQTAVSDLEVEYSEEPGTLYYI----KYRVAGRSDFLTIATTRPETLFGDVALAV 285
W P + T + D ++ E+ L YI + R G +L AT RPET++G + V
Sbjct: 184 RWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV 243
Query: 286 NP-----------QDEHYSQFIGMMAIVPMTY--------------------------GR 308
NP +D+ + + A +++ G
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGD 303
Query: 309 HVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKL 344
V I+ ++VD + TGV+ P H D++ L
Sbjct: 304 EVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDL 339
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 288 QDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLP 347
+++ F+G+ A P G +P+ S YV E+GTG + P HD D+ A+K LP
Sbjct: 101 EEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 159
Query: 348 ILNVMNKDGTLNEVAGL------------FRGLDRFEARKKLWSDLEETGLAVKKEPHTL 395
I V+ +G + G F GLD A++K+ L++ GL KK + L
Sbjct: 160 IKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKKVSYRL 219
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 74/182 (40%), Gaps = 48/182 (26%)
Query: 256 IKYRVAGRSDFLTIATTRPETLFGDVALAV-------------NPQ-----DEHYSQFI- 296
I + V + LT+ TTRP+T G LAV NP+ DE + +
Sbjct: 15 ITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVA 74
Query: 297 --------------GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLAR 342
G A+ P+T G +P+ + +V E+GTG + PGHD DY A
Sbjct: 75 EAEMATMEKKGVDTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFAS 133
Query: 343 KLGLPILNV-MNKDGTLNEV-------------AGLFRGLDRFEARKKLWSDLEETGLAV 388
K GL I V + DG+ ++ +G F GLD A + L G+
Sbjct: 134 KYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGE 193
Query: 389 KK 390
+K
Sbjct: 194 RK 195
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 22/173 (12%)
Query: 75 WESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134
WE FK + + + M P LH+GH T DI+ RY R+KG L
Sbjct: 22 WEKTKAFKTTNKSKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDVLHPI 81
Query: 135 GTDHAGIATQ---LVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGAS 191
G D G+ + L K +K +E R Q+K LG S
Sbjct: 82 GWDAFGLPAEQYALSSGKHPQPFTLKNIENFR-------------------RQLKSLGFS 122
Query: 192 CDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV 244
D+ +E T D R F ++++KGL VNW P L T +++ E+
Sbjct: 123 FDYEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEEI 175
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN------- 452
S+RG + KQW + + A++ L E L P+ +K+ +W+
Sbjct: 185 SERGSFPVYKKPMKQWVLKITNYADRLL---EDLNLLDWPDSLKKLQTNWIGKEEIDGKI 241
Query: 453 ---IKDWCISRQLWWGHRIPVWY 472
++DW +RQ +WG PV++
Sbjct: 242 TYKLQDWIFARQRYWGEPFPVYF 264
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 288 QDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLP 347
+++ F+G+ A P G +P+ S YV E+GTG + P HD D+ A+K LP
Sbjct: 87 EEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 145
Query: 348 ILNVMNKDGTLNEVAGL------------FRGLDRFEARKKLWSDLEETGLAVKK 390
I V+ +G + G F GLD A++K+ L++ GL KK
Sbjct: 146 IKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKK 200
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 288 QDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLP 347
+++ F+G+ A P G +P+ S YV E+GTG + P HD D+ A+K LP
Sbjct: 107 EEDKEGVFLGVYATNPAN-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 165
Query: 348 ILNVMNKDGTLNEVAGL------------FRGLDRFEARKKLWSDLEETGLAVKK 390
I V+ +G + G F GLD A++K+ L++ GL KK
Sbjct: 166 IKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKK 220
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V + H+GH + D++ RYHR+KG L GTD G
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG---------QK 61
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQLSRAV 209
AE K+ ++S +FT + + K+ D++ + F T +EQ V
Sbjct: 62 VAEAAKQKQVSPYDFTT-----------AVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVV 110
Query: 210 VEAFIRLHEKGLIYQGSY 227
E + +L +KG IY G Y
Sbjct: 111 KELWTKLEQKGDIYLGRY 128
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V + H+GH + D++ RYHR+KG L GTD G
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG---------QK 61
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQLSRAV 209
AE K+ ++S +FT + + K+ D++ + F T +EQ V
Sbjct: 62 VAEAAKQKQVSPYDFTT-----------AVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVV 110
Query: 210 VEAFIRLHEKGLIYQGSY 227
E + +L +KG IY G Y
Sbjct: 111 KELWTKLEQKGDIYLGRY 128
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V + H+GH + D++ RYHR+KG L GTD G
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG---------QK 61
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERF--TLDEQLSRAV 209
AE K+ ++S +FT + + K+ D++ + F T +EQ V
Sbjct: 62 VAEAAKQKQVSPYDFTT-----------AVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVV 110
Query: 210 VEAFIRLHEKGLIYQGSY 227
E + +L +KG IY G Y
Sbjct: 111 KELWTKLEQKGDIYLGRY 128
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 36/166 (21%)
Query: 267 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 302
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 30 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKA 89
Query: 303 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 90 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 149
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 398
+++G L + F+GL EA + + DL GL K+E + P
Sbjct: 150 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYP 193
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 36/159 (22%)
Query: 267 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 302
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 25 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKA 84
Query: 303 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 85 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 144
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
+++G L + F+GL EA + + DL GL K+E
Sbjct: 145 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGLLFKEE 181
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 36/159 (22%)
Query: 267 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 302
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 25 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKA 84
Query: 303 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 85 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 144
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
+++G L + F+GL EA + + DL G K+E
Sbjct: 145 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGFLFKEE 181
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 36/159 (22%)
Query: 267 LTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIV------------------------ 302
L I TT P TL G+VA AV+P+ + + +G A++
Sbjct: 25 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKA 84
Query: 303 ----------PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM 352
P + ++ YV +E GTG++ +P D AR GLP+L +
Sbjct: 85 LEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTV 144
Query: 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKE 391
+++G L + F+GL EA + + DL G K+E
Sbjct: 145 DEEGKL--LVEPFKGLYFREANRAILRDLRGRGFLFKEE 181
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V H+GHA D + RY+R++ +L GTD G+ Q E++
Sbjct: 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL- 65
Query: 152 AAEGIKRVEL--SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAV 209
GI EL E K++WE+ ++T+ T D + V
Sbjct: 66 ---GISPKELVDRNAERFKKLWEF----------------LKIEYTKFIRTTDPYHVKFV 106
Query: 210 VEAFIRLHEKGLIYQGSY 227
+ F +++G IY G Y
Sbjct: 107 QKVFEECYKRGDIYLGEY 124
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Query: 76 ESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135
++QG P + F + P V S H+GH + D++ RYHR+KG + G
Sbjct: 15 QTQG---PGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTG 71
Query: 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT 195
TD G Q V E A +G+ ++ + +++S+ K+ ++
Sbjct: 72 TDEHG---QKVAEAA-AKQGVSPMDFTT----------------SVSSEFKQCFQEMNYD 111
Query: 196 RERF--TLDEQLSRAVVEAFIRLHEKGLIYQGSY 227
F T + + V + + +L KG IY G Y
Sbjct: 112 MNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKY 145
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147
GS+PF I+ G H+GHA D + R+ R+ G +L GTD G Q +
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG---QKMA 66
Query: 148 EKMLAAEGIKRVELSR 163
E A EGI EL+R
Sbjct: 67 ETA-AKEGIPAAELAR 81
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 501 VEIYQDPD-VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVA 555
V + PD V+ W + + +G+PD ++ F++++P + G DI+ F W A
Sbjct: 226 VPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPA 285
Query: 556 RMVMMGIEFTGSVPFSHVYL 575
++ G+ + F+H +L
Sbjct: 286 FLMSAGLPLPKRI-FAHGWL 304
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 20/137 (14%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V H+GHA + D + R+HR+ G T +L GTD G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG----------- 53
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLG-ASCDWTRERFTLDEQLSRAVV 210
E + R + E K + ++ G LG A D+ R T +E+ + V
Sbjct: 54 --ETVYRAAQAAGEDPK---AFVDRVSGRFKRAWDLLGIAYDDFIR---TTEERHKKVVQ 105
Query: 211 EAFIRLHEKGLIYQGSY 227
+++E G IY G Y
Sbjct: 106 LVLKKVYEAGDIYYGEY 122
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 20/137 (14%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V H+GHA + D + R+HR+ G T +L GTD G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG----------- 53
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLG-ASCDWTRERFTLDEQLSRAVV 210
E + R + E K + ++ G LG A D+ R T +E+ + V
Sbjct: 54 --ETVYRAAQAAGEDPK---AFVDRVSGRFKRAWDLLGIAYDDFIR---TTEERHKKVVQ 105
Query: 211 EAFIRLHEKGLIYQGSY 227
+++E G IY G Y
Sbjct: 106 LVLKKVYEAGDIYYGEY 122
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 20/137 (14%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML 151
F ++ P V H+GHA + D + R+HR+ G T +L GTD G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG----------- 53
Query: 152 AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLG-ASCDWTRERFTLDEQLSRAVV 210
E + R + E K + ++ G LG A D+ R T +E+ + V
Sbjct: 54 --ETVYRAAQAAGEDPK---AFVDRVSGRFKRAWDLLGIAYDDFIR---TTEERHKKVVQ 105
Query: 211 EAFIRLHEKGLIYQGSY 227
+++E G IY G Y
Sbjct: 106 LVLKKVYEAGDIYYGEY 122
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 78
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 9 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 66
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM 150
+++ P GS+H+GH + D+ VRY RM+G ++ D G L +++
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 92 FVISMPPPNVTGSLHMGHAMFVTL-EDIMVRYHRMKGRPTLWLPGTDHAG 140
++++ P G +H GH L DI VRY R+KG +++ GTD G
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHG 53
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 36/137 (26%)
Query: 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA---EG 155
PN G H+GHA + D M R+ R+ G +L GTD GI KML + EG
Sbjct: 36 PN--GKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGI-------KMLQSARKEG 86
Query: 156 IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLG-----ASCDWTRERFTLDEQLSRAVV 210
I +L+ TS +R+ ++ D+ R + S+A+
Sbjct: 87 ITPRDLADRN----------------TSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIW 130
Query: 211 EAFIRLHEKGLIYQGSY 227
+A + G IY+G Y
Sbjct: 131 QAMV---ANGDIYKGGY 144
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 58 TLPKTFDFTSEERIYNWWESQGYFKPN-FERG---SDPFVISMPPPNVTGSLHMGHAMFV 113
+L KTF N +Q PN F +G + F++ N TG LH+GHA
Sbjct: 2 SLSKTF--------LNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGA 53
Query: 114 TLEDIMVRYHRMKG 127
D + R R G
Sbjct: 54 VFGDTLTRLARHLG 67
>pdb|3TQ6|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
pdb|3TQ6|B Chain B, Crystal Structure Of Human Mitochondrial Transcription
Factor A, Tfam Or Mttfa, Bound To The Light Strand
Promoter Lsp
Length = 214
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
Query: 322 FGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE----VAGLFRGLDRFEARKKL 377
G+ VL P + YL K LPI N D E +A +R L +++KK+
Sbjct: 1 MGSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP--DSKKKI 58
Query: 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP--LVSKQWFVTMEPLAEKALHAVEKGEL 435
+ D V KE + R E + P ++S + + + L KA+ +K EL
Sbjct: 59 YQDAYRAEWQVYKEEIS-------RFKEQLTPSQIMSLEKEIMDKHLKRKAM--TKKKEL 109
Query: 436 TIM--PERFEKIYNHWLS 451
T++ P+R YN +++
Sbjct: 110 TLLGKPKRPRSAYNVYVA 127
>pdb|3LFM|A Chain A, Crystal Structure Of The Fat Mass And Obesity Associated
(Fto) Protein Reveals Basis For Its Substrate
Specificity
Length = 495
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 196 RERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLY- 254
RE ++ E+L + V EAF+ LH+ G +++ + +L T VS + + PG Y
Sbjct: 42 REASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQ-GKDLLTPVSRILI---GNPGCTYK 97
Query: 255 YIKYRV 260
Y+ R+
Sbjct: 98 YLNTRL 103
>pdb|2WBN|A Chain A, Crystal Structure Of The G2p (Large Terminase) Nuclease
Domain From The Bacteriophage Spp1
pdb|2WC9|A Chain A, Crystal Structure Of The G2p (Large Terminase) Nuclease
Domain From The Bacteriophage Spp1 With Bound Mn
Length = 212
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 17 SYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTLPKTFDFTSEER 70
Y +PL F + WH+++ K R +A+ ++K +L +T DF + +
Sbjct: 58 GYGPDPLAFVR---------WHYDKRKNRIYAIDELVDHKVSLKRTADFVRKNK 102
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 525 GWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFS 571
GW + +D F + GH IL FW AR+ M + F + P+
Sbjct: 283 GWGFMPSDRALVFVDNHDNQRGHSILTFWDARLYKMAVGFMLAHPYG 329
>pdb|2WFD|A Chain A, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
pdb|2WFD|B Chain B, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
Length = 252
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 262 GRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295
G++ FL AT RPET FG V P D Y F
Sbjct: 27 GKNIFLVAATLRPETXFGQTNCWVRP-DXKYIGF 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,161,393
Number of Sequences: 62578
Number of extensions: 856588
Number of successful extensions: 2141
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2041
Number of HSP's gapped (non-prelim): 69
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)