Query 007761
Match_columns 590
No_of_seqs 252 out of 2063
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 14:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0525 ValS Valyl-tRNA synthe 100.0 3E-145 7E-150 1214.9 48.1 526 60-590 2-529 (877)
2 PLN02943 aminoacyl-tRNA ligase 100.0 4E-136 9E-141 1194.1 56.0 568 15-590 14-587 (958)
3 PTZ00419 valyl-tRNA synthetase 100.0 1E-132 3E-137 1174.8 53.5 531 59-590 24-589 (995)
4 PLN02381 valyl-tRNA synthetase 100.0 3E-132 6E-137 1167.4 50.9 530 59-590 96-659 (1066)
5 KOG0432 Valyl-tRNA synthetase 100.0 5E-133 1E-137 1088.9 40.7 529 60-590 43-597 (995)
6 PRK05729 valS valyl-tRNA synth 100.0 4E-132 1E-136 1158.4 49.7 519 59-590 5-524 (874)
7 TIGR00422 valS valyl-tRNA synt 100.0 7E-131 2E-135 1148.6 51.5 526 60-590 2-529 (861)
8 PRK06039 ileS isoleucyl-tRNA s 100.0 4E-129 8E-134 1141.1 52.9 529 59-590 7-596 (975)
9 PRK14900 valS valyl-tRNA synth 100.0 1E-128 3E-133 1138.8 50.8 522 60-590 16-542 (1052)
10 PTZ00427 isoleucine-tRNA ligas 100.0 3E-128 6E-133 1135.5 50.3 528 60-590 69-724 (1205)
11 PF00133 tRNA-synt_1: tRNA syn 100.0 2E-128 4E-133 1087.7 37.7 517 70-590 1-565 (601)
12 PLN02882 aminoacyl-tRNA ligase 100.0 6E-127 1E-131 1128.0 52.3 528 60-590 5-618 (1159)
13 COG0060 IleS Isoleucyl-tRNA sy 100.0 7E-128 1E-132 1087.9 40.9 524 59-590 14-606 (933)
14 PRK05743 ileS isoleucyl-tRNA s 100.0 6E-125 1E-129 1098.2 50.1 518 60-590 16-596 (912)
15 PRK13804 ileS isoleucyl-tRNA s 100.0 2E-124 4E-129 1096.6 51.3 520 60-590 21-634 (961)
16 PLN02843 isoleucyl-tRNA synthe 100.0 2E-123 3E-128 1088.5 49.1 517 63-590 3-615 (974)
17 PRK13208 valS valyl-tRNA synth 100.0 5E-123 1E-127 1075.6 51.4 520 60-590 7-537 (800)
18 TIGR00392 ileS isoleucyl-tRNA 100.0 8E-123 2E-127 1081.7 49.1 526 60-590 3-615 (861)
19 PLN02959 aminoacyl-tRNA ligase 100.0 3E-110 7E-115 983.8 48.6 523 60-590 10-722 (1084)
20 TIGR00395 leuS_arch leucyl-tRN 100.0 4E-106 1E-110 941.9 44.0 513 66-590 2-624 (938)
21 KOG0433 Isoleucyl-tRNA synthet 100.0 2E-101 4E-106 826.1 38.2 511 60-590 27-617 (937)
22 TIGR00396 leuS_bact leucyl-tRN 100.0 5E-100 1E-104 880.5 40.7 445 63-585 1-576 (842)
23 KOG0434 Isoleucyl-tRNA synthet 100.0 5E-101 1E-105 814.9 28.3 530 58-590 3-605 (1070)
24 PLN02563 aminoacyl-tRNA ligase 100.0 1.2E-99 3E-104 879.2 40.8 446 60-585 77-677 (963)
25 PRK12300 leuS leucyl-tRNA synt 100.0 2.3E-98 5E-103 873.5 38.0 473 105-590 1-581 (897)
26 PRK00390 leuS leucyl-tRNA synt 100.0 9E-98 2E-102 860.1 42.5 443 60-590 2-574 (805)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 1.8E-80 3.9E-85 697.1 31.6 450 61-590 3-583 (814)
28 cd00817 ValRS_core catalytic c 100.0 7.2E-78 1.6E-82 643.3 34.1 344 90-590 1-347 (382)
29 KOG0435 Leucyl-tRNA synthetase 100.0 1.7E-77 3.7E-82 637.1 25.0 436 66-582 34-576 (876)
30 cd00818 IleRS_core catalytic c 100.0 1.4E-67 3E-72 555.4 31.2 302 90-590 1-303 (338)
31 KOG0437 Leucyl-tRNA synthetase 100.0 7.7E-66 1.7E-70 550.8 25.5 520 61-590 9-714 (1080)
32 TIGR00398 metG methionyl-tRNA 100.0 2.6E-61 5.7E-66 537.8 28.6 318 92-590 1-331 (530)
33 PRK12268 methionyl-tRNA synthe 100.0 1.2E-60 2.6E-65 535.4 26.1 325 90-590 3-338 (556)
34 COG0143 MetG Methionyl-tRNA sy 100.0 2.3E-59 5E-64 511.8 26.9 321 89-590 4-337 (558)
35 PRK12267 methionyl-tRNA synthe 100.0 3.2E-59 7E-64 531.3 27.2 293 89-590 3-303 (648)
36 PRK00133 metG methionyl-tRNA s 100.0 1.4E-58 3.1E-63 526.9 29.1 318 90-590 2-333 (673)
37 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.7E-57 3.7E-62 474.9 27.4 277 91-590 1-277 (312)
38 PRK11893 methionyl-tRNA synthe 100.0 1.3E-57 2.8E-62 506.5 27.3 297 90-590 1-303 (511)
39 PLN02610 probable methionyl-tR 100.0 1.1E-56 2.3E-61 514.2 28.3 323 85-590 12-352 (801)
40 PLN02224 methionine-tRNA ligas 100.0 1.2E-54 2.6E-59 484.3 27.0 295 88-590 67-370 (616)
41 PF09334 tRNA-synt_1g: tRNA sy 100.0 3.6E-55 7.7E-60 468.3 20.1 316 92-590 1-331 (391)
42 cd00814 MetRS_core catalytic c 100.0 3.4E-52 7.4E-57 435.9 26.4 274 91-590 1-284 (319)
43 cd00812 LeuRS_core catalytic c 100.0 1.2E-48 2.5E-53 408.2 22.5 262 91-590 1-279 (314)
44 KOG0436 Methionyl-tRNA synthet 100.0 2E-48 4.4E-53 396.5 22.6 300 88-590 37-348 (578)
45 KOG1247 Methionyl-tRNA synthet 100.0 2.1E-33 4.5E-38 286.4 9.1 329 85-590 9-347 (567)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 7.1E-28 1.5E-32 263.7 15.4 120 95-235 28-148 (463)
47 PRK12418 cysteinyl-tRNA synthe 99.9 1.8E-26 3.8E-31 244.2 19.1 120 94-235 13-138 (384)
48 TIGR00435 cysS cysteinyl-tRNA 99.9 1.9E-26 4.1E-31 252.0 19.1 123 94-236 25-148 (465)
49 TIGR03447 mycothiol_MshC cyste 99.9 9.3E-26 2E-30 239.8 18.1 122 91-235 38-165 (411)
50 PRK14536 cysS cysteinyl-tRNA s 99.9 6E-26 1.3E-30 246.7 16.6 123 93-235 26-158 (490)
51 PLN02946 cysteine-tRNA ligase 99.9 6.6E-25 1.4E-29 240.9 15.8 134 80-235 72-205 (557)
52 PRK14534 cysS cysteinyl-tRNA s 99.9 2.2E-23 4.7E-28 225.7 16.8 122 93-235 24-156 (481)
53 PTZ00399 cysteinyl-tRNA-synthe 99.9 1.4E-23 3.1E-28 236.6 14.7 122 92-235 63-187 (651)
54 PF13603 tRNA-synt_1_2: Leucyl 99.9 1.7E-23 3.6E-28 200.2 12.2 128 253-382 9-185 (185)
55 PRK14535 cysS cysteinyl-tRNA s 99.9 6.1E-23 1.3E-27 226.7 13.9 123 93-235 251-374 (699)
56 cd00672 CysRS_core catalytic c 99.9 5E-22 1.1E-26 195.8 13.4 98 80-196 12-111 (213)
57 cd00671 ArgRS_core catalytic c 99.8 2.4E-20 5.3E-25 184.3 14.1 124 91-236 1-125 (212)
58 COG0215 CysS Cysteinyl-tRNA sy 99.8 2.1E-20 4.5E-25 198.7 12.1 134 79-235 13-148 (464)
59 PF01406 tRNA-synt_1e: tRNA sy 99.8 4.2E-20 9.1E-25 187.6 11.8 121 94-234 12-133 (300)
60 PRK01611 argS arginyl-tRNA syn 99.8 3.2E-18 7E-23 190.0 15.6 146 68-232 89-236 (507)
61 cd00674 LysRS_core_class_I cat 99.8 4.4E-18 9.6E-23 178.8 15.7 125 90-225 19-152 (353)
62 KOG2007 Cysteinyl-tRNA synthet 99.7 1.3E-16 2.8E-21 167.8 15.0 124 95-235 60-186 (586)
63 PRK00750 lysK lysyl-tRNA synth 99.7 3.9E-16 8.4E-21 172.7 14.7 126 90-224 23-157 (510)
64 COG0018 ArgS Arginyl-tRNA synt 99.6 3.2E-15 7E-20 166.1 16.6 161 67-230 93-292 (577)
65 PRK12451 arginyl-tRNA syntheta 99.6 2.9E-14 6.3E-19 160.0 15.8 147 78-230 101-285 (562)
66 PF00750 tRNA-synt_1d: tRNA sy 99.5 1.4E-14 3E-19 154.0 10.0 156 72-231 3-199 (354)
67 TIGR00456 argS arginyl-tRNA sy 99.5 1.5E-13 3.2E-18 154.7 18.0 147 77-230 100-287 (566)
68 PLN02286 arginine-tRNA ligase 99.5 5.4E-13 1.2E-17 149.9 16.6 156 68-229 96-288 (576)
69 cd00802 class_I_aaRS_core cata 99.3 3.6E-12 7.8E-17 118.2 8.1 76 95-186 2-77 (143)
70 TIGR00467 lysS_arch lysyl-tRNA 99.0 4.5E-10 9.7E-15 124.0 8.5 143 90-240 18-179 (515)
71 cd09287 GluRS_non_core catalyt 98.7 3.2E-08 6.9E-13 98.9 8.5 94 95-224 4-97 (240)
72 PRK04156 gltX glutamyl-tRNA sy 98.6 2.1E-07 4.5E-12 103.6 10.0 96 93-224 102-197 (567)
73 KOG1195 Arginyl-tRNA synthetas 98.6 8.8E-07 1.9E-11 94.7 14.2 163 66-232 86-285 (567)
74 TIGR00463 gltX_arch glutamyl-t 98.6 1.9E-07 4.2E-12 103.7 9.6 95 92-224 93-187 (560)
75 PRK12558 glutamyl-tRNA synthet 98.5 2.8E-07 6E-12 100.1 8.2 92 94-224 4-96 (445)
76 PLN02907 glutamate-tRNA ligase 98.4 1.7E-06 3.8E-11 99.5 10.9 109 78-224 199-307 (722)
77 cd00807 GlnRS_core catalytic c 98.3 3.4E-06 7.3E-11 84.2 9.4 93 94-224 3-95 (238)
78 PTZ00402 glutamyl-tRNA synthet 98.3 4.2E-06 9.1E-11 93.3 11.2 94 93-223 53-146 (601)
79 TIGR03838 queuosine_YadB gluta 98.3 2.9E-06 6.3E-11 86.7 9.2 93 95-224 3-95 (272)
80 PLN03233 putative glutamate-tR 98.3 3.2E-06 7E-11 93.1 10.0 95 93-225 12-106 (523)
81 KOG4426 Arginyl-tRNA synthetas 98.3 9.3E-06 2E-10 85.2 12.6 146 88-239 186-369 (656)
82 TIGR00440 glnS glutaminyl-tRNA 98.2 4.1E-06 8.8E-11 92.4 9.6 95 94-225 2-96 (522)
83 PF00749 tRNA-synt_1c: tRNA sy 98.2 2.8E-06 6.2E-11 89.0 8.0 94 94-224 3-96 (314)
84 PTZ00437 glutaminyl-tRNA synth 98.2 5.9E-06 1.3E-10 91.4 10.4 94 93-224 52-145 (574)
85 PRK05347 glutaminyl-tRNA synth 98.2 5.8E-06 1.3E-10 91.5 9.8 95 93-224 30-124 (554)
86 COG0008 GlnS Glutamyl- and glu 98.2 7.5E-06 1.6E-10 89.6 10.1 95 93-224 10-104 (472)
87 PRK14703 glutaminyl-tRNA synth 98.1 7.8E-06 1.7E-10 94.2 9.0 95 93-224 32-126 (771)
88 PRK05710 glutamyl-Q tRNA(Asp) 98.1 1.1E-05 2.4E-10 83.5 9.0 95 93-224 6-100 (299)
89 PLN02859 glutamine-tRNA ligase 98.0 2.1E-05 4.6E-10 89.9 10.5 94 93-224 265-358 (788)
90 cd00418 GlxRS_core catalytic c 98.0 1.9E-05 4.2E-10 78.7 9.0 90 94-220 3-92 (230)
91 KOG1147 Glutamyl-tRNA syntheta 98.0 1.6E-05 3.6E-10 85.5 8.8 99 93-229 201-299 (712)
92 PRK01406 gltX glutamyl-tRNA sy 98.0 1.9E-05 4.1E-10 87.2 9.7 131 93-261 5-159 (476)
93 TIGR00464 gltX_bact glutamyl-t 97.9 3.5E-05 7.7E-10 85.0 9.4 94 94-224 3-96 (470)
94 PRK12410 glutamylglutaminyl-tR 97.9 4.4E-05 9.5E-10 82.8 9.4 90 97-224 4-93 (433)
95 PRK14895 gltX glutamyl-tRNA sy 97.9 4.4E-05 9.6E-10 84.2 9.4 94 94-224 6-99 (513)
96 PLN02627 glutamyl-tRNA synthet 97.7 0.00012 2.6E-09 81.0 9.8 96 93-224 46-148 (535)
97 cd00808 GluRS_core catalytic c 97.7 0.00014 3E-09 73.1 8.5 91 94-220 3-100 (239)
98 PF01921 tRNA-synt_1f: tRNA sy 97.7 1.3E-05 2.8E-10 84.3 0.7 148 88-240 21-185 (360)
99 COG1384 LysS Lysyl-tRNA synthe 97.7 0.00021 4.6E-09 77.6 9.9 101 90-197 19-128 (521)
100 KOG1148 Glutaminyl-tRNA synthe 97.3 0.00044 9.6E-09 75.5 6.6 94 93-224 249-342 (764)
101 KOG1149 Glutamyl-tRNA syntheta 96.3 0.012 2.7E-07 62.6 8.1 132 96-262 37-190 (524)
102 PLN02563 aminoacyl-tRNA ligase 95.4 0.029 6.4E-07 67.2 7.1 80 372-454 212-305 (963)
103 cd00802 class_I_aaRS_core cata 95.4 0.023 5E-07 52.4 4.8 49 540-590 94-142 (143)
104 TIGR00396 leuS_bact leucyl-tRN 94.2 0.061 1.3E-06 63.9 5.6 80 372-454 130-225 (842)
105 PRK00390 leuS leucyl-tRNA synt 92.4 0.26 5.6E-06 58.4 7.0 85 372-458 133-231 (805)
106 COG0495 LeuS Leucyl-tRNA synth 92.4 0.087 1.9E-06 61.5 2.9 78 375-454 138-230 (814)
107 KOG0435 Leucyl-tRNA synthetase 91.7 0.068 1.5E-06 59.9 1.0 52 398-452 199-250 (876)
108 cd00805 TyrRS_core catalytic c 90.2 0.27 5.9E-06 50.5 3.7 47 540-590 152-199 (269)
109 PRK01611 argS arginyl-tRNA syn 90.2 0.37 8.1E-06 54.1 5.1 49 540-590 274-326 (507)
110 PRK13354 tyrosyl-tRNA syntheta 88.9 0.36 7.8E-06 52.6 3.6 49 538-590 185-234 (410)
111 PRK12556 tryptophanyl-tRNA syn 88.5 0.46 1E-05 50.3 4.0 52 538-590 148-206 (332)
112 PRK12285 tryptophanyl-tRNA syn 88.2 1.2 2.7E-05 47.8 7.0 42 89-135 64-105 (368)
113 cd00395 Tyr_Trp_RS_core cataly 87.6 0.78 1.7E-05 47.3 4.9 50 538-590 152-202 (273)
114 PF00579 tRNA-synt_1b: tRNA sy 86.6 0.93 2E-05 47.0 4.9 53 538-590 148-202 (292)
115 PRK12284 tryptophanyl-tRNA syn 86.6 0.76 1.6E-05 50.1 4.3 52 538-590 147-206 (431)
116 PRK05912 tyrosyl-tRNA syntheta 86.4 0.58 1.3E-05 51.0 3.3 49 538-590 187-236 (408)
117 PLN02486 aminoacyl-tRNA ligase 85.5 4.2 9.1E-05 44.0 9.3 42 88-133 70-112 (383)
118 PRK12285 tryptophanyl-tRNA syn 83.7 0.88 1.9E-05 48.9 3.1 51 538-590 202-255 (368)
119 PRK08560 tyrosyl-tRNA syntheta 83.6 1.3 2.9E-05 46.8 4.5 49 538-590 167-218 (329)
120 cd00806 TrpRS_core catalytic c 80.8 2.6 5.7E-05 43.6 5.3 34 99-135 6-39 (280)
121 TIGR00233 trpS tryptophanyl-tR 80.7 1.3 2.8E-05 47.0 3.0 40 91-135 2-41 (328)
122 PRK00927 tryptophanyl-tRNA syn 80.4 1.6 3.6E-05 46.2 3.7 52 538-590 137-197 (333)
123 cd00395 Tyr_Trp_RS_core cataly 80.4 4.4 9.6E-05 41.8 6.8 33 99-135 6-39 (273)
124 PRK12282 tryptophanyl-tRNA syn 80.0 1.8 3.9E-05 45.9 3.8 52 538-590 141-200 (333)
125 PTZ00126 tyrosyl-tRNA syntheta 79.5 2.7 5.8E-05 45.5 5.0 50 538-590 209-261 (383)
126 COG0162 TyrS Tyrosyl-tRNA synt 78.1 1.5 3.3E-05 47.5 2.6 48 539-590 180-228 (401)
127 PRK13354 tyrosyl-tRNA syntheta 77.7 3.7 8.1E-05 44.8 5.5 43 89-136 31-74 (410)
128 PRK08560 tyrosyl-tRNA syntheta 77.6 4.5 9.8E-05 42.8 6.0 41 90-135 29-69 (329)
129 cd00671 ArgRS_core catalytic c 77.6 5 0.00011 39.6 5.9 51 539-590 157-210 (212)
130 PRK05912 tyrosyl-tRNA syntheta 75.2 6.8 0.00015 42.8 6.7 41 90-135 32-73 (408)
131 PF01927 Mut7-C: Mut7-C RNAse 74.5 4.1 8.9E-05 37.9 4.2 21 119-139 12-32 (147)
132 TIGR00233 trpS tryptophanyl-tR 73.9 7.6 0.00017 41.1 6.5 17 177-193 60-76 (328)
133 TIGR00456 argS arginyl-tRNA sy 73.7 3.9 8.4E-05 46.7 4.5 46 542-590 331-376 (566)
134 cd00806 TrpRS_core catalytic c 72.6 4.8 0.0001 41.6 4.5 53 538-590 136-195 (280)
135 cd00805 TyrRS_core catalytic c 71.0 3.3 7.1E-05 42.6 2.9 33 99-135 7-40 (269)
136 PRK12284 tryptophanyl-tRNA syn 70.7 11 0.00024 41.3 6.9 100 94-222 5-105 (431)
137 cd00418 GlxRS_core catalytic c 69.0 7.7 0.00017 39.0 4.9 49 538-590 108-157 (230)
138 PLN02886 aminoacyl-tRNA ligase 68.1 6.3 0.00014 42.6 4.3 70 94-193 49-118 (389)
139 TIGR00467 lysS_arch lysyl-tRNA 68.1 3.7 8.1E-05 46.1 2.7 49 539-590 225-278 (515)
140 PRK12283 tryptophanyl-tRNA syn 67.8 5 0.00011 43.4 3.5 30 99-133 9-39 (398)
141 COG0180 TrpS Tryptophanyl-tRNA 67.6 4.7 0.0001 42.3 3.1 45 90-140 4-49 (314)
142 PRK00927 tryptophanyl-tRNA syn 65.5 7.2 0.00016 41.4 4.2 32 99-134 8-39 (333)
143 TIGR00234 tyrS tyrosyl-tRNA sy 64.8 6.4 0.00014 42.5 3.7 40 91-135 30-70 (377)
144 cd00808 GluRS_core catalytic c 63.8 9 0.0002 38.7 4.3 49 538-590 117-166 (239)
145 TIGR00234 tyrS tyrosyl-tRNA sy 60.2 8.2 0.00018 41.7 3.4 12 129-140 30-41 (377)
146 COG0180 TrpS Tryptophanyl-tRNA 59.4 25 0.00054 37.0 6.7 19 175-193 62-80 (314)
147 PLN02886 aminoacyl-tRNA ligase 58.0 14 0.00029 40.1 4.6 22 538-559 183-205 (389)
148 PTZ00126 tyrosyl-tRNA syntheta 54.9 11 0.00024 40.8 3.3 42 90-135 65-106 (383)
149 PF00579 tRNA-synt_1b: tRNA sy 51.0 9.4 0.0002 39.5 2.0 42 89-135 3-44 (292)
150 PLN02486 aminoacyl-tRNA ligase 49.4 17 0.00036 39.4 3.6 46 541-590 221-269 (383)
151 PRK12283 tryptophanyl-tRNA syn 48.6 41 0.00089 36.6 6.4 18 176-193 58-75 (398)
152 PRK12556 tryptophanyl-tRNA syn 48.5 16 0.00035 38.8 3.3 33 99-133 10-42 (332)
153 COG0162 TyrS Tyrosyl-tRNA synt 45.2 19 0.00041 39.2 3.2 40 91-135 32-72 (401)
154 PTZ00348 tyrosyl-tRNA syntheta 44.5 27 0.00058 40.7 4.5 50 538-590 174-226 (682)
155 PF01921 tRNA-synt_1f: tRNA sy 43.8 28 0.0006 37.3 4.1 51 538-590 233-286 (360)
156 PTZ00348 tyrosyl-tRNA syntheta 43.8 23 0.0005 41.2 3.8 40 90-133 31-70 (682)
157 PF00749 tRNA-synt_1c: tRNA sy 43.5 48 0.001 34.9 5.9 48 539-590 199-247 (314)
158 COG1656 Uncharacterized conser 41.8 48 0.001 31.4 4.9 91 119-241 18-109 (165)
159 PRK05710 glutamyl-Q tRNA(Asp) 34.2 48 0.001 34.7 4.1 48 539-590 192-240 (299)
160 KOG3361 Iron binding protein i 33.0 64 0.0014 29.4 4.0 50 316-375 47-113 (157)
161 TIGR03838 queuosine_YadB gluta 32.6 40 0.00086 34.8 3.1 48 539-590 185-233 (272)
162 PF04918 DltD_M: DltD central 32.2 24 0.00052 33.4 1.4 18 403-420 23-40 (163)
163 PLN02286 arginine-tRNA ligase 30.9 77 0.0017 36.4 5.4 48 542-590 331-382 (576)
164 COG3171 Uncharacterized protei 30.5 59 0.0013 28.8 3.3 51 181-231 22-73 (119)
165 cd06545 GH18_3CO4_chitinase Th 30.2 1.7E+02 0.0037 29.4 7.3 105 92-221 26-133 (253)
166 PRK12282 tryptophanyl-tRNA syn 29.8 28 0.0006 37.0 1.5 17 99-115 9-25 (333)
167 PRK14895 gltX glutamyl-tRNA sy 29.6 90 0.002 35.2 5.5 49 538-590 195-244 (513)
168 PLN02517 phosphatidylcholine-s 26.8 58 0.0013 37.2 3.4 66 375-444 159-224 (642)
169 COG0018 ArgS Arginyl-tRNA synt 25.2 1E+02 0.0022 35.4 5.0 51 538-590 332-387 (577)
170 TIGR00640 acid_CoA_mut_C methy 25.2 3.1E+02 0.0068 24.8 7.4 21 115-135 18-38 (132)
171 TIGR00464 gltX_bact glutamyl-t 24.8 1.1E+02 0.0024 34.2 5.1 48 539-590 197-245 (470)
172 KOG2144 Tyrosyl-tRNA synthetas 24.8 41 0.00089 34.8 1.6 50 537-590 175-226 (360)
173 KOG2145 Cytoplasmic tryptophan 23.1 61 0.0013 33.5 2.4 28 88-115 82-109 (397)
174 KOG2713 Mitochondrial tryptoph 20.3 2.3E+02 0.005 29.5 5.8 98 99-222 20-118 (347)
175 cd00598 GH18_chitinase-like Th 20.0 4.6E+02 0.01 24.9 8.0 43 177-219 92-140 (210)
No 1
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-145 Score=1214.93 Aligned_cols=526 Identities=59% Similarity=1.068 Sum_probs=500.7
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~ 138 (590)
++.||+ ++|++||++|++++.|.+..+...++|+|.+||||+||.||||||++.++.|+|+||+||+||+|++++|+||
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~Dh 81 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDH 81 (877)
T ss_pred CCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCC
Confidence 578998 9999999999999999998665435699999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHh
Q 007761 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (590)
Q Consensus 139 ~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (590)
+|+++|.++|+.+.++|+++.+++||+|++.||+|++++.+.|++||++||+++||+++++|+|+++.++|+++|.+|++
T Consensus 82 AGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~ 161 (877)
T COG0525 82 AGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYE 161 (877)
T ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCc
Q 007761 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298 (590)
Q Consensus 219 kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~ 298 (590)
+|+||++.++|+|||+|+|+|||.||+|++..|.++||+|++.+.+.+|+|||||||||+|++||+|||+|+||++|+|+
T Consensus 162 ~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk 241 (877)
T COG0525 162 KGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGK 241 (877)
T ss_pred CCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccC-ccCCCCHHHHHHHH
Q 007761 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRFEARKKL 377 (590)
Q Consensus 299 ~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~-~~~G~~~~~a~~~i 377 (590)
.+++|+. +++||||++++||++||||+|++||+||++||+++++|+||+++++|++|+++++++ +|+||++++||++|
T Consensus 242 ~v~lPl~-~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kI 320 (877)
T COG0525 242 EVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKI 320 (877)
T ss_pred EEecCCC-CCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHH
Confidence 9999995 699999999999999999999999999999999999999999999999999998875 99999999999999
Q ss_pred HHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCee
Q 007761 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (590)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ 457 (590)
++.|++.|++++.|++.|++|+|+|||.|||+++++|||+++..+++++++++++|+++|+|+++++.+.+|+++++|||
T Consensus 321 v~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWc 400 (877)
T COG0525 321 VEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWC 400 (877)
T ss_pred HHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCce
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred eeeecCcccccCeeEEcCCcccEEEeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhc
Q 007761 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537 (590)
Q Consensus 458 ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~ 537 (590)
||||+|||||||+|||.+ ++..+++.+..+.... ...+....+++++||||||||||+|||+++|||.++ .+|+++
T Consensus 401 ISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~--~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t-~~l~~f 476 (877)
T COG0525 401 ISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAA--AEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEET-PDLKKF 476 (877)
T ss_pred eeeeeecCcccceEEecC-CCcEEeCCccccchhh--hccCchhcccCCcchhhhhhhcccccccccCCCCcc-hHHHhc
Confidence 999999999999999964 4566666664333322 111222568899999999999999999999999996 889999
Q ss_pred CCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
||+|++++|+||+|||+++|+++++.++++.||+.|++||+|+|++|+|||||
T Consensus 477 yPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS 529 (877)
T COG0525 477 YPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKS 529 (877)
T ss_pred CCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999
No 2
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.2e-136 Score=1194.13 Aligned_cols=568 Identities=88% Similarity=1.428 Sum_probs=533.9
Q ss_pred ccccccChhhhhhhhccccCCCcCCCcccccchhhhccCCCCCCC---CCCCChHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 007761 15 LSSYRLNPLLFSKRQRCMKLPHWHFNRTKQRFFAVAAAENNKDTL---PKTFDFTSEERIYNWWESQGYFKPNFERGSDP 91 (590)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~k~ 91 (590)
++.++++++.++++++.+ |.|+|+...+|++.+..+++... ++.||+..|++||++|++++.|++..+.++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~E~~~~~~W~~~~~f~~~~~~~~~~ 89 (958)
T PLN02943 14 SSIRRLNPLLLSACRRRA----WAPRRAARRFCAAAASENDVFTSPETAKSFDFTSEERIYNWWESQGYFKPNFDRGGDP 89 (958)
T ss_pred hhhcccchhhhhchHHHh----hCCCcccccccchhcCccchhcccccCCCCChhhhHHHHHHHHHCCCcccCcccCCCC
Confidence 455778888888888888 88888888888888877777664 89999833999999999999999987656778
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 007761 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (590)
Q Consensus 92 f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~ 171 (590)
|+|++||||+||.|||||+++++++|+++||+||+||+|++++||||||+|+|.++++.+.+.|+++.++++++|++.||
T Consensus 90 f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~ 169 (958)
T PLN02943 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVW 169 (958)
T ss_pred EEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccccCC
Q 007761 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 251 (590)
Q Consensus 172 ~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~ 251 (590)
+|++++.+.|+++|++||+++||+++++|++++|.++++++|.+|+++|+||++.++|+|||.|+|+|||+||+|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~ 249 (958)
T PLN02943 170 EWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG 249 (958)
T ss_pred HHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCCC-ceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceecC
Q 007761 252 TLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (590)
Q Consensus 252 ~~~~~~~~~~~~~-~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~ 330 (590)
.++|++|++.+.+ .+|+|||||||||+||+||+|||+|+||++|+|+++++|++.++++|||+++||++++|||+||+|
T Consensus 250 ~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~ 329 (958)
T PLN02943 250 TLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKIS 329 (958)
T ss_pred cEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeC
Confidence 9999999997644 799999999999999999999999999999999999999965899999999999999999999999
Q ss_pred CCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEe
Q 007761 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (590)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (590)
|+||++||++|++||||+++++|++|+|++++| +.+++||++|+++|+++|++++.++++|++|+|||||++|+++
T Consensus 330 Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g----~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~ 405 (958)
T PLN02943 330 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG----LYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 405 (958)
T ss_pred CCCChHHHHHHHHcCCCceeeeCCCceeeccCC----ccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEE
Confidence 999999999999999999999999999997655 4599999999999999999999999999999999999999999
Q ss_pred eecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCC--cccEEEeCChhH
Q 007761 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--EEEYIVARNADE 488 (590)
Q Consensus 411 ~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~--~~~~~~~~~~~~ 488 (590)
+++||||+++++++++++++++++++|+|+++++.+.+||++++||||||||+||||||+|+|++. ++.++++.+.++
T Consensus 406 ~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~ 485 (958)
T PLN02943 406 VSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEE 485 (958)
T ss_pred eccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHH
Confidence 999999999999999999998889999999999999999999999999999999999999998532 234788888888
Q ss_pred HHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCC
Q 007761 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (590)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~ 568 (590)
+...+...+|.+..+.+++||||||||||+||++++|||+.++++|++|||+|++++|+||++||+++|+++++.+++++
T Consensus 486 ~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~ 565 (958)
T PLN02943 486 ALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTV 565 (958)
T ss_pred HHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCC
Confidence 87776666666667899999999999999999999999986557899999999999999999999999999999999999
Q ss_pred CCcEEEEeceEEeCCCCccccC
Q 007761 569 PFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 569 Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
||++|++||+++|.+|+|||||
T Consensus 566 Pf~~v~~hg~v~~~~G~KMSKS 587 (958)
T PLN02943 566 PFSYVYLHGLIRDSQGRKMSKT 587 (958)
T ss_pred ChheEEEeccEECCCCCcccCc
Confidence 9999999999999999999999
No 3
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.4e-132 Score=1174.78 Aligned_cols=531 Identities=53% Similarity=0.992 Sum_probs=499.4
Q ss_pred CCCCCCh-HHHHHHHHHHHhcCCCCCCC----CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 007761 59 LPKTFDF-TSEERIYNWWESQGYFKPNF----ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (590)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~----~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~ 133 (590)
.++.||+ ++|++||++|++++.|++.. ..++++|+|++|||||||.|||||+++++++|+++||+||+|++|+++
T Consensus 24 ~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~ 103 (995)
T PTZ00419 24 MAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWV 103 (995)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 4688998 89999999999999999852 335678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHH
Q 007761 134 PGTDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (590)
Q Consensus 134 ~G~D~~Gl~ie~~ve~~~-~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~ 212 (590)
+||||||+|+|.++|+.+ .+.|.++.++++++|++.|++|++++.+.|+++|++||+++||+++++|++++|.+.++++
T Consensus 104 ~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~ 183 (995)
T PTZ00419 104 PGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEA 183 (995)
T ss_pred CCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHH
Confidence 999999999999999877 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEcceeEEEeccCCcccCCccccccccC----------------CeEEEEEEEecCCCc-eEEEeecCCC
Q 007761 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSD-FLTIATTRPE 275 (590)
Q Consensus 213 f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~~~~~~~~~~-~l~v~Tt~Pe 275 (590)
|.+|+++|+||++.++|+|||.|+|+|||+||+|++.. |.++||+|++.+.+. +|+|||||||
T Consensus 184 F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPe 263 (995)
T PTZ00419 184 FVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIE 263 (995)
T ss_pred HHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcc
Confidence 99999999999999999999999999999999998877 667799999987655 9999999999
Q ss_pred ccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecC-ccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecC
Q 007761 276 TLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK 354 (590)
Q Consensus 276 tl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~-~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~ 354 (590)
||+||+||+|||+|++|++|+|++|.+|+..++.+|||+++ ||++++|||+||+||+||++||++|++||||+++++|+
T Consensus 264 Tl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~ 343 (995)
T PTZ00419 264 TMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTL 343 (995)
T ss_pred hhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCC
Confidence 99999999999999999999999999999437899999999 99999999999999999999999999999999999999
Q ss_pred CCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCC
Q 007761 355 DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGE 434 (590)
Q Consensus 355 ~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~ 434 (590)
+|+|++++|.|.|+.+++||++|++.|+++|++++.+++.|++|+|||||++|++++++||||+++++++++++++++++
T Consensus 344 ~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~ 423 (995)
T PTZ00419 344 DGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGE 423 (995)
T ss_pred CceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred ceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCC--------cccEEEeCChhHHHHHhhhhcC---CCcce
Q 007761 435 LTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--------EEEYIVARNADEALEKAHQKYG---KNVEI 503 (590)
Q Consensus 435 i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 503 (590)
++|+|+++++++.+||++++||||||||+||||||+|+|+++ .+.+++..+.++++..+...++ ++..+
T Consensus 424 i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (995)
T PTZ00419 424 LKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFEL 503 (995)
T ss_pred eEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCe
Confidence 999999999999999999999999999999999999999653 2336666677777665543332 23569
Q ss_pred eecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCC
Q 007761 504 YQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ 583 (590)
Q Consensus 504 ~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~ 583 (590)
+|++||||||||||+||++++|||++. ++|++|||+|++++|+||+|||+++|+++++.+++++||++|++||+|+|.+
T Consensus 504 ~~~~DVlDtWFdS~l~p~~~~g~p~~~-~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~ 582 (995)
T PTZ00419 504 EQDEDVLDTWFSSGLFPFSTLGWPDQT-DDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQ 582 (995)
T ss_pred EECCceEEEEEeCCHHHHHHhCCCCCh-HHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCC
Confidence 999999999999999999999999875 6799999999999999999999999999999999999999999999999999
Q ss_pred CCccccC
Q 007761 584 VKKCQKH 590 (590)
Q Consensus 584 G~KMSKS 590 (590)
|+|||||
T Consensus 583 G~KMSKS 589 (995)
T PTZ00419 583 GEKMSKS 589 (995)
T ss_pred CCCcccC
Confidence 9999999
No 4
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=2.9e-132 Score=1167.37 Aligned_cols=530 Identities=49% Similarity=0.965 Sum_probs=495.1
Q ss_pred CCCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (590)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D 137 (590)
.++.||+ ++|++||++|+++++|++..+.++++|+|++||||+||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 96 ~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D 175 (1066)
T PLN02381 96 MAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVD 175 (1066)
T ss_pred cccCCCHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCC
Confidence 4789998 899999999999999998766667889999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHH-HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHH
Q 007761 138 HAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (590)
Q Consensus 138 ~~Gl~ie~~ve~~~-~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (590)
|||+|+|.++++.+ .+.|.++.++++++|++.||+|++++.+.|+++|++||+++||+++|+|++++|.++|+++|.+|
T Consensus 176 ~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L 255 (1066)
T PLN02381 176 HAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRL 255 (1066)
T ss_pred CCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHH
Confidence 99999999998876 45688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEcceeEEEeccCCcccCCccccccccC----------------CeEEEEEEEecCCCceEEEeecCCCccCCC
Q 007761 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSDFLTIATTRPETLFGD 280 (590)
Q Consensus 217 ~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~ 280 (590)
+++|+||++.++|+|||.|+|+|||+||+|.+.. +..++|+|++.+.+.+|+|||||||||+|+
T Consensus 256 ~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~ 335 (1066)
T PLN02381 256 YKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGD 335 (1066)
T ss_pred HHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcc
Confidence 9999999999999999999999999999998866 556788999876556899999999999999
Q ss_pred ceEEeCCCCcccccccCcEEEccCCCCCeeeEeecC-ccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCcee
Q 007761 281 VALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLN 359 (590)
Q Consensus 281 ~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~-~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~ 359 (590)
+||+|||+|+||++|+|++|.||++ ++.+|||++. ||++++|||+||+||+||++||++|++||||+++++|++|+++
T Consensus 336 ~avaV~P~d~ry~~L~G~~~~~Pl~-~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~ 414 (1066)
T PLN02381 336 TAIAIHPDDERYKHLHGKFAVHPFN-GRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKIN 414 (1066)
T ss_pred cceeeCCCCcchhhhCCCEEECCCC-CCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeC
Confidence 9999999999999999999999994 7899999865 9999999999999999999999999999999999999999999
Q ss_pred cccC-ccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHH---HcCCc
Q 007761 360 EVAG-LFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAV---EKGEL 435 (590)
Q Consensus 360 ~~~~-~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i---~~~~i 435 (590)
++++ .|.|+.+++||++|++.|++.|++++.++++|+||+||||++||++++++||||+++++++++++++ .+++|
T Consensus 415 ~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i 494 (1066)
T PLN02381 415 SNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKL 494 (1066)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCce
Confidence 8865 8999999999999999999999999999999999999999999999999999999999999999999 67899
Q ss_pred eEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEc--C-------C-cccEEEeCChhHHHHHhhhhc-CCCccee
Q 007761 436 TIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV--G-------K-EEEYIVARNADEALEKAHQKY-GKNVEIY 504 (590)
Q Consensus 436 ~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~--~-------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 504 (590)
+|+|+++++++.+||+|++|||||||||||||||+|+|. + . .+.|.+..+..+++..+...+ +....++
T Consensus 495 ~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1066)
T PLN02381 495 EFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELS 574 (1066)
T ss_pred EEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCcccee
Confidence 999999999999999999999999999999999999985 1 0 135666766666655443333 3333689
Q ss_pred ecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCC
Q 007761 505 QDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV 584 (590)
Q Consensus 505 ~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G 584 (590)
|++||||||||||+||+++++||.+. ++|++|||+|++++|+||+|||+++|+++|+.++++.||++|++||||+|++|
T Consensus 575 rd~DVlDtWF~Sg~~p~~~lg~P~~~-~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G 653 (1066)
T PLN02381 575 QDPDVLDTWFSSGLFPLSVLGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG 653 (1066)
T ss_pred ecCceeeEEEeCCchHHHHhcCCCCH-HHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCC
Confidence 99999999999999999999999875 78999999999999999999999999999999999999999999999999999
Q ss_pred CccccC
Q 007761 585 KKCQKH 590 (590)
Q Consensus 585 ~KMSKS 590 (590)
+|||||
T Consensus 654 ~KMSKS 659 (1066)
T PLN02381 654 RKMSKS 659 (1066)
T ss_pred CCCCCC
Confidence 999999
No 5
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-133 Score=1088.87 Aligned_cols=529 Identities=57% Similarity=1.052 Sum_probs=510.3
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCC-CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~-~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D 137 (590)
++.|++ .+|+.|+.||++.+.|++... ..+..|++..||||+||.||||||++.++.|+++||.||.||+|++++|+|
T Consensus 43 ~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~D 122 (995)
T KOG0432|consen 43 PAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTD 122 (995)
T ss_pred cccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCcc
Confidence 677887 899999999999999998765 346789999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHcC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHH
Q 007761 138 HAGIATQLVVEKMLAAEG-IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (590)
Q Consensus 138 ~~Gl~ie~~ve~~~~~~g-~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (590)
|+|+.+|.++||.+...+ +++.++++++|++++|+|.+++...|.+||++||.++||.|++||+|+...++|.++|.+|
T Consensus 123 HAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL 202 (995)
T KOG0432|consen 123 HAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRL 202 (995)
T ss_pred ccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHH
Confidence 999999999999887765 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEcceeEEEeccCCcccCCccccccccC----------------CeEEEEEEEecCCCceEEEeecCCCccCCC
Q 007761 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGRSDFLTIATTRPETLFGD 280 (590)
Q Consensus 217 ~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~ 280 (590)
++.|+||++.+.|+|||..+|++||.||++.+.+ |.++.|+|++.+++..|+|+|||||||+|+
T Consensus 203 ~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGD 282 (995)
T KOG0432|consen 203 HEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGD 282 (995)
T ss_pred HhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccc
Confidence 9999999999999999999999999999988743 778899999999999999999999999999
Q ss_pred ceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceec
Q 007761 281 VALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE 360 (590)
Q Consensus 281 ~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~ 360 (590)
+||+|||+|.||+++.|+.+.|||+ ++.+|||.|.+|+++||||+|+++|+|+++||++|++|||+.++|++++|.+++
T Consensus 283 vAvAVhP~D~RYk~lhGk~~~hP~~-~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~ 361 (995)
T KOG0432|consen 283 VAVAVHPDDDRYKHLHGKFVKHPFT-GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNN 361 (995)
T ss_pred eeEEeCCCCcccccccCceeecCCC-CCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceec
Confidence 9999999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecc
Q 007761 361 VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPE 440 (590)
Q Consensus 361 ~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~ 440 (590)
.||+|+||.+++||++|++.|++.|++...++.++.+|.|+|||+.||+++.+|||++++.+++++++++++|++++.|+
T Consensus 362 ~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~ 441 (995)
T KOG0432|consen 362 VCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPE 441 (995)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcC-----CcccEEEeCChhHHHHHhhhhcC--CCcceeecCceeEEe
Q 007761 441 RFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG-----KEEEYIVARNADEALEKAHQKYG--KNVEIYQDPDVLDTW 513 (590)
Q Consensus 441 ~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dvlDvW 513 (590)
..++.+..|+++++|||||||.||||+||+|++.. .+++|++++++++|++++...+| ...+++|++||||||
T Consensus 442 ~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTW 521 (995)
T KOG0432|consen 442 FHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTW 521 (995)
T ss_pred HHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhh
Confidence 99999999999999999999999999999999842 25679999999999999998874 567899999999999
Q ss_pred ecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 514 FSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 514 fdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
|+||+|||+++|||+.+ ++|..+||.+++.+|+||++||++||+|+|+.|++++||+.|++||+|+|.+|||||||
T Consensus 522 FSS~L~PfS~lGWP~~t-~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKS 597 (995)
T KOG0432|consen 522 FSSGLWPFSTLGWPEET-KDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKS 597 (995)
T ss_pred hhcccccchhcCCcccc-ccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccchh
Confidence 99999999999999987 89999999999999999999999999999999999999999999999999999999998
No 6
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.5e-132 Score=1158.36 Aligned_cols=519 Identities=62% Similarity=1.123 Sum_probs=494.2
Q ss_pred CCCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (590)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D 137 (590)
.++.|++ ++|++||++|++++.|++..+ ++++|+|++||||+||.|||||+++++++|+++||+||+|++|++++|||
T Consensus 5 ~~~~y~~~~~E~~~~~~W~~~~~f~~~~~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D 83 (874)
T PRK05729 5 LPKTYDPKEVEAKWYQKWEEKGYFKPDDN-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTD 83 (874)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcC-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC
Confidence 3688998 899999999999999998765 45669999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHH
Q 007761 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (590)
Q Consensus 138 ~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (590)
|||+|+|.++++.+.+.|+++.++++++|++.||+|++++.+.|+++|++||+++||+++++|+|++|.++|+++|.+|+
T Consensus 84 ~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 163 (874)
T PRK05729 84 HAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLY 163 (874)
T ss_pred ccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccC
Q 007761 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (590)
Q Consensus 218 ~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G 297 (590)
++|+||++.++|+|||.|+|+|||+||+|++..+.++||+|++.+.+.+|+|||||||||+||+||+|||+|+||++|+|
T Consensus 164 ~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g 243 (874)
T PRK05729 164 EKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIG 243 (874)
T ss_pred HCCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHH
Q 007761 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKL 377 (590)
Q Consensus 298 ~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i 377 (590)
+++.+|++ ++++|||+++||++++|||+||++|+||++||+++++|||++++++|++|++++++|.|+|+++++||++|
T Consensus 244 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i 322 (874)
T PRK05729 244 KTVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAI 322 (874)
T ss_pred CEEECCCC-CCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHH
Confidence 99999995 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCee
Q 007761 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (590)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ 457 (590)
++.|++.|++.+.+++.|++|+|||||++|++++++||||+++++++++++++++++++|+|+++++++.+||++++|||
T Consensus 323 ~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWc 402 (874)
T PRK05729 323 VADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWC 402 (874)
T ss_pred HHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccce
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred eeeecCcccccCeeEEcCCcccEEEeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhc
Q 007761 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537 (590)
Q Consensus 458 ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~ 537 (590)
|||||+||||||+|+|++ +.+++.....++ + ....+.+++||||||||||+||++++|||++. ++|++|
T Consensus 403 ISRq~~WG~pIP~~~~~~--~~~~v~~~~~~~-------~-~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~-~~~~~~ 471 (874)
T PRK05729 403 ISRQLWWGHRIPAWYDED--GEVYVGREEPEA-------R-EKALLTQDEDVLDTWFSSALWPFSTLGWPEKT-EDLKRF 471 (874)
T ss_pred eeeecccCCcccEEEeCC--CcEEeCCccccc-------c-cccCeEeCCceecceecCCccHHHHhCCCCCc-HHHHhc
Confidence 999999999999999965 234444332211 0 11258999999999999999999999999765 779999
Q ss_pred CCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
||+|++++|+||++||+++|+++++.+++++||++|++||+|+|.+|+|||||
T Consensus 472 ~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS 524 (874)
T PRK05729 472 YPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKS 524 (874)
T ss_pred CCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999
No 7
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=7.3e-131 Score=1148.57 Aligned_cols=526 Identities=59% Similarity=1.067 Sum_probs=501.3
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~ 138 (590)
++.|++ ++|++||++|++++.|++..+.++++|+|++||||+||.|||||+++++++|+++||+||+|++|++++||||
T Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 2 PKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 578998 8999999999999999998766678899999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHh
Q 007761 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (590)
Q Consensus 139 ~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (590)
||+|||.++++.+.+.|+++.++++++|++.|++|++++.+.+++++++||+++||+++++|+|++|.++|+++|.+|++
T Consensus 82 ~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~ 161 (861)
T TIGR00422 82 AGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYE 161 (861)
T ss_pred CCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCCC-ceEEEeecCCCccCCCceEEeCCCCcccccccC
Q 007761 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (590)
Q Consensus 219 kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~-~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G 297 (590)
+|+||++.++|+|||.|+|+|||+||+|++..+.++|++|++.+.+ .+|+|||||||||+||+||+|||+|+||++|+|
T Consensus 162 ~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g 241 (861)
T TIGR00422 162 KGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIG 241 (861)
T ss_pred CCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcC
Confidence 9999999999999999999999999999999999999999998755 899999999999999999999999999999999
Q ss_pred cEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHH
Q 007761 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKL 377 (590)
Q Consensus 298 ~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i 377 (590)
+++.+|++ ++++|||+++||++++|||+||+||+||++||+++++|||++++++|++|++++++|.|+|+++++||++|
T Consensus 242 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i 320 (861)
T TIGR00422 242 KKVILPLT-GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKI 320 (861)
T ss_pred CEEEcCCC-CCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHH
Confidence 99999996 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCee
Q 007761 378 WSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWC 457 (590)
Q Consensus 378 ~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ 457 (590)
+++|+++|++++.++++|++|+|||||++|++++++||||+++++++++++++++++++|+|++.++++.+||++++|||
T Consensus 321 ~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ 400 (861)
T TIGR00422 321 VEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWC 400 (861)
T ss_pred HHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccce
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred eeeecCcccccCeeEEcCCcccEEEeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhc
Q 007761 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKF 537 (590)
Q Consensus 458 ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~ 537 (590)
|||||+||||||+|+|+. ++...++.+..++...+ .++.+..+.|++||||||||||+||+++++||.++ ++|++|
T Consensus 401 ISRq~~WG~piP~w~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~-~~~~~~ 476 (861)
T TIGR00422 401 ISRQLIWGHRIPVWYCKE-CGEVYVAKEEPLPDDKT--NTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDET-KDLKKF 476 (861)
T ss_pred eeeecccCCcceEEEECC-CCcEEeccchHHhhhhh--ccCCcccEEECCCcccceeccchHHHHHhCCCCCh-HHHhhc
Confidence 999999999999999965 34556666665554433 23444579999999999999999999999999876 689999
Q ss_pred CCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
||+|++++|+||++||+++|+++++.+.++.||++|++||+|+|.+|+|||||
T Consensus 477 ~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS 529 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKS 529 (861)
T ss_pred CCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999998
No 8
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-129 Score=1141.11 Aligned_cols=529 Identities=28% Similarity=0.506 Sum_probs=491.8
Q ss_pred CCCCCCh-HHHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
.++.|++ ++|++||++|+++++|++..+ .++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|
T Consensus 7 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~G 86 (975)
T PRK06039 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 86 (975)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCC
Confidence 3688998 899999999999999998654 4577899999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHH
Q 007761 136 TDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (590)
Q Consensus 136 ~D~~Gl~ie~~ve~~~~~~g~-~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~ 214 (590)
|||||+|||.++++.+...+. ..+++++++|+++|++|+.++.+.|++++++||+++||+++|+|+++.|.+.++++|.
T Consensus 87 wD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~ 166 (975)
T PRK06039 87 WDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALK 166 (975)
T ss_pred cCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHH
Confidence 999999999999886633322 3457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEcceeEEEeccCCcccCCcccc--ccccCCeEEEEEEEecC-CCceEEEeecCCCccCCCceEEeCCCC--
Q 007761 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAG-RSDFLTIATTRPETLFGDVALAVNPQD-- 289 (590)
Q Consensus 215 ~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~~~~~~~~~-~~~~l~v~Tt~Petl~~~~~v~v~p~~-- 289 (590)
+|+++|+||++.++|+|||.|+|+|||+||+ |++..++++||+|++.+ .+.+|+|||||||||+||+||+|||++
T Consensus 167 ~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y 246 (975)
T PRK06039 167 QLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDY 246 (975)
T ss_pred HHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCce
Confidence 9999999999999999999999999999999 99999999999999974 678999999999999999999999998
Q ss_pred -------ccc-----------------------ccccCcEEEccCCC--C--CeeeEeecCccccCCCCCceecCCCCCh
Q 007761 290 -------EHY-----------------------SQFIGMMAIVPMTY--G--RHVPIISDKYVDKEFGTGVLKISPGHDH 335 (590)
Q Consensus 290 -------~~y-----------------------~~l~G~~~~~P~~~--~--~~ipii~~~~V~~~~GTG~V~~~P~h~~ 335 (590)
++| ++|+|++|.+|+++ + +.+|||+++||++++|||+||+|||||+
T Consensus 247 ~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~ 326 (975)
T PRK06039 247 VKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGE 326 (975)
T ss_pred EEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCCh
Confidence 566 67999999999963 3 4799999999999999999999999999
Q ss_pred hhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeeccc
Q 007761 336 NDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQW 415 (590)
Q Consensus 336 ~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QW 415 (590)
+||++|++||||+++++|++|+|++.+|.|+|+.++||+++|++.|+++|++++.+++.|+||+|||||+|+++++++||
T Consensus 327 ~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qW 406 (975)
T PRK06039 327 DDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESW 406 (975)
T ss_pred HHHHHHHHcCCCccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHcCCceEecchHHH-HHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHHHHHhh
Q 007761 416 FVTMEPLAEKALHAVEKGELTIMPERFEK-IYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH 494 (590)
Q Consensus 416 Fi~~~~~~~~~~~~i~~~~i~~~P~~~~~-~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~~~ 494 (590)
||++++++++++++++ +++|+|++.++ ++.+||++++||||||||+||||||+|+|++ ++.+++..+.+++.+...
T Consensus 407 Fi~~~~~k~~ll~~~~--~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~-~g~~~v~~~~~el~~~~g 483 (975)
T PRK06039 407 FIRVTKIKDRMLELNQ--KINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCED-CGRIDVIGSIEELEELFG 483 (975)
T ss_pred eEecHHHHHHHHHhhC--CeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecC-CCeEEEeccHHHHHHHhC
Confidence 9999999999999985 59999999999 9999999999999999999999999999975 446788888877654421
Q ss_pred h-----------------hcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHH
Q 007761 495 Q-----------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (590)
Q Consensus 495 ~-----------------~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~ 557 (590)
. .++++..++|++||||||||||+||+++++||.+.++.|++|||+|++++|+||+||||++|
T Consensus 484 ~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l 563 (975)
T PRK06039 484 EDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTL 563 (975)
T ss_pred CCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHH
Confidence 1 12234568999999999999999999999999876677999999999999999999999999
Q ss_pred HHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 558 VMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 558 ~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+++++.++++.||++|++||+|+|.+|+|||||
T Consensus 564 ~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKS 596 (975)
T PRK06039 564 LALSTALFDRPPYKNVLVHGHVLDEDGQKMSKS 596 (975)
T ss_pred HHHHHHhcCCCcccEEEEeeeEECCCCCCcCCC
Confidence 999999999999999999999999999999999
No 9
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-128 Score=1138.80 Aligned_cols=522 Identities=52% Similarity=0.982 Sum_probs=489.7
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCC-CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D 137 (590)
++.|++ ++|++||++|+++++|+... ..++++|+|++||||+||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 16 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D 95 (1052)
T PRK14900 16 AKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTD 95 (1052)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCC
Confidence 789998 89999999999999999863 3457789999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHH-HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHH
Q 007761 138 HAGIATQLVVEKMLA-AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (590)
Q Consensus 138 ~~Gl~ie~~ve~~~~-~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (590)
|||+|+|.++++.+. +.|.++.++++++|++.||+|++++.+.|+++|++||+++||+++++|++++|.+.++++|.+|
T Consensus 96 ~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L 175 (1052)
T PRK14900 96 HAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRL 175 (1052)
T ss_pred ccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999998888663 3588889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEcceeEEEeccCCcccCCccccccc-cCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccc
Q 007761 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295 (590)
Q Consensus 217 ~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l 295 (590)
+++|+||++.++|+|||.|+|+|||+||+|++ ..+.++||+|++.+.+.+|+|||||||||+||+||+|||++++|++|
T Consensus 176 ~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L 255 (1052)
T PRK14900 176 HEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMAL 255 (1052)
T ss_pred HHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHh
Confidence 99999999999999999999999999999998 78889999999988778999999999999999999999999999999
Q ss_pred cCcEEEccCCCCCeeeEeecC-ccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHH
Q 007761 296 IGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEAR 374 (590)
Q Consensus 296 ~G~~~~~P~~~~~~ipii~~~-~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~ 374 (590)
+|++|.||++ ++.+|||++. +|++++|||+||+||+||++||++|++|||+++++||++|+|++++|.|.|+.+++||
T Consensus 256 ~G~~~~~Pl~-~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear 334 (1052)
T PRK14900 256 HGKKVRHPIT-GRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEAR 334 (1052)
T ss_pred cCCEEECCCC-CCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHH
Confidence 9999999994 7899999764 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCC
Q 007761 375 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK 454 (590)
Q Consensus 375 ~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~ 454 (590)
+.|+++|++.|++++.+++.|+|||||||+++|++++++||||+++++++++++++++++++|+|++.++++.+||++++
T Consensus 335 ~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~ 414 (1052)
T PRK14900 335 KEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIH 414 (1052)
T ss_pred HHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred CeeeeeecCcccccCeeEEcCCcccEEEeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhh
Q 007761 455 DWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDF 534 (590)
Q Consensus 455 DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f 534 (590)
||||||||+||||||+|+|++ +.++++....+. ...|+ +..+.+++||||||||||+||+++++||++. ++|
T Consensus 415 DW~ISRqr~WG~PIP~w~~~~--~~~~v~~~~~~~----~~~~~-~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~-~~~ 486 (1052)
T PRK14900 415 DWCISRQLWWGHQIPAWYCPD--GHVTVARETPEA----CSTCG-KAELRQDEDVLDTWFSSGLWPFSTMGWPEQT-DTL 486 (1052)
T ss_pred cceEEeecCCCceeCeEEcCC--CcEEeccccccc----ccccC-ccceecCCceEEEEEcCChHHHHHHcCCCch-HHH
Confidence 999999999999999999964 345555432210 00122 3358899999999999999999999999874 679
Q ss_pred hhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 535 KKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 535 ~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
++|||+|++++|+||++||+++|+++++.++++.||++|++||||+|.+|+|||||
T Consensus 487 ~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKS 542 (1052)
T PRK14900 487 RTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKT 542 (1052)
T ss_pred HhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999
No 10
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2.8e-128 Score=1135.48 Aligned_cols=528 Identities=22% Similarity=0.397 Sum_probs=481.3
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~ 136 (590)
+++|++ ++|++|+++|+++++|++..+ +++++|++++||||+||.|||||+++++++|+++||+||+||+|++++||
T Consensus 69 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~Gw 148 (1205)
T PTZ00427 69 SENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGW 148 (1205)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCcc
Confidence 788998 899999999999999999765 45677999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHH
Q 007761 137 DHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (590)
Q Consensus 137 D~~Gl~ie~~ve~~~~~~g~-~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (590)
||||+|||.++++.+...+. ...++++++|.+.|++|+.++.+.+++++++||+++||+++|+|+++.|.+.++++|.+
T Consensus 149 D~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~ 228 (1205)
T PTZ00427 149 DCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSE 228 (1205)
T ss_pred CCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999999887633222 23468999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEcceeEEEeccCCcccCCccc--cccccCCeEEEEEEEecCC------------------------------
Q 007761 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR------------------------------ 263 (590)
Q Consensus 216 L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~~~~~~~~------------------------------ 263 (590)
|+++|+||++.++|+|||.|+|+||++|| +|++..++++|++|++.+.
T Consensus 229 L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~ 308 (1205)
T PTZ00427 229 LYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRE 308 (1205)
T ss_pred HHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccccccc
Confidence 99999999999999999999999999999 7999999999999987541
Q ss_pred -----------------CceEEEeecCCCccCCCceEEeCCCCcc--c--------------------------------
Q 007761 264 -----------------SDFLTIATTRPETLFGDVALAVNPQDEH--Y-------------------------------- 292 (590)
Q Consensus 264 -----------------~~~l~v~Tt~Petl~~~~~v~v~p~~~~--y-------------------------------- 292 (590)
+.+++||||||||||||+||||||++++ |
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v 388 (1205)
T PTZ00427 309 NSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKI 388 (1205)
T ss_pred cccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEE
Confidence 3689999999999999999999998651 1
Q ss_pred ------ccccCcEEEccCC--------CCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCC--C----eeEee
Q 007761 293 ------SQFIGMMAIVPMT--------YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL--P----ILNVM 352 (590)
Q Consensus 293 ------~~l~G~~~~~P~~--------~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l--~----~~~~i 352 (590)
++|+|++|.+|+. .++.+|||+++||++++|||+||+||+||++||++|++||| | +++++
T Consensus 389 ~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~v 468 (1205)
T PTZ00427 389 VNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPL 468 (1205)
T ss_pred EEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCcccccccccc
Confidence 2356888888872 25789999999999999999999999999999999999999 2 78899
Q ss_pred cCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHc
Q 007761 353 NKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEK 432 (590)
Q Consensus 353 ~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~ 432 (590)
|++|+|+++++.|.|+.++|||+.|++.|+++|++++.+++.|+||||||||+|+++++++||||+++++++++++++
T Consensus 469 d~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~-- 546 (1205)
T PTZ00427 469 DANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNN-- 546 (1205)
T ss_pred CCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCceEecchH-HHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHHHHHhhh--------h-------
Q 007761 433 GELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ--------K------- 496 (590)
Q Consensus 433 ~~i~~~P~~~-~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~~~~--------~------- 496 (590)
++++|+|+++ ++++.+||++++||||||||+||||||+|+|+. ++..++..+.+++.+.... .
T Consensus 547 ~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~-~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~ 625 (1205)
T PTZ00427 547 ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEK-METVICVESIKHLEELSGVKNINDLHRHFIDHIEI 625 (1205)
T ss_pred CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCC-CCeEeccCCHHHHHHHhccccchhhcccccChhhc
Confidence 4799999999 699999999999999999999999999999965 4557777787765543210 0
Q ss_pred -cCCC---cceeecCceeEEeecCCchhhhhcCCCCC-ChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCc
Q 007761 497 -YGKN---VEIYQDPDVLDTWFSSALWPFSTLGWPDV-SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFS 571 (590)
Q Consensus 497 -~~~~---~~~~~~~dvlDvWfdS~~~~~~~~~~~~~-~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~ 571 (590)
++++ ..++|++||||||||||+||+++++||.+ .+++|+++||+|++++|+||+||||++|+++++.++++.||+
T Consensus 626 ~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK 705 (1205)
T PTZ00427 626 KNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFK 705 (1205)
T ss_pred cCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCCCCcc
Confidence 1111 25899999999999999999999999985 357899999999999999999999999999999999999999
Q ss_pred EEEEeceEEeCCCCccccC
Q 007761 572 HVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 572 ~v~~hG~v~d~~G~KMSKS 590 (590)
+|++||||+|++|+|||||
T Consensus 706 ~VlvHG~Vld~dG~KMSKS 724 (1205)
T PTZ00427 706 NLICNGLVLASDGKKMSKR 724 (1205)
T ss_pred eeEEccEEEcCCCCCcccC
Confidence 9999999999999999999
No 11
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.7e-128 Score=1087.65 Aligned_cols=517 Identities=40% Similarity=0.755 Sum_probs=456.7
Q ss_pred HHHHHHHhcCCCCCC--CCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHH
Q 007761 70 RIYNWWESQGYFKPN--FERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147 (590)
Q Consensus 70 ~~~~~W~~~~~f~~~--~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~v 147 (590)
|||++|++++.|+.. ..+++++|+|++||||+||.|||||++|++++|+++||+||+||+|++++||||||+|||.++
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 799999999999987 455678899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH-HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcc
Q 007761 148 EKMLA-AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (590)
Q Consensus 148 e~~~~-~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~ 226 (590)
++.+. +.+.+..++++++|++.|++|++++.+.++++|++||+++||+++|+|+++.|.+.++++|.+|+++|+||++.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 87652 22335678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccCCcccCCccccccccCCeEEEEEEEecCCCc-eEEEeecCCCccCCCceEEeCCC-----------------
Q 007761 227 YMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSD-FLTIATTRPETLFGDVALAVNPQ----------------- 288 (590)
Q Consensus 227 ~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~-~l~v~Tt~Petl~~~~~v~v~p~----------------- 288 (590)
++|+|||.|+|+|||+||+|++..++++||+|++.+.+. +|+|||||||||+||+||+|||+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~ 240 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLV 240 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHH
T ss_pred CCCCcCcccccchhhhhcccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHH
Confidence 999999999999999999999999999999999988665 99999999999999999999999
Q ss_pred ------------CcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCC
Q 007761 289 ------------DEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG 356 (590)
Q Consensus 289 ------------~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G 356 (590)
+.++++|+|++|.||+ .++.+|||++++|++++|||+||+||+||++||++|++++|+++++||++|
T Consensus 241 ~~~~~~~~~~~~~~~g~~L~g~~~~~P~-~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G 319 (601)
T PF00133_consen 241 EKLSKQEKTKLEDFRGKELVGLKYIHPL-TGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDG 319 (601)
T ss_dssp HHHHTTTSSSEEEEECHHHTTSEEE-TT-SSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTS
T ss_pred HHHHhhhhhcccccCcceecCcEecccc-ccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCc
Confidence 6678899999999999 578999999999999999999999999999999999999999999999999
Q ss_pred ceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCce
Q 007761 357 TLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (590)
Q Consensus 357 ~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~ 436 (590)
++++.+++|.|+.+++||+.|++.|+++|++++.++++|++|+|||||++|++++++||||++++++++++++++ +|+
T Consensus 320 ~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~--~i~ 397 (601)
T PF00133_consen 320 RFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALE--KIK 397 (601)
T ss_dssp TBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHH--TSE
T ss_pred eEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcc--cce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred EecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHHHHHh--------------hhhc-CCCc
Q 007761 437 IMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKA--------------HQKY-GKNV 501 (590)
Q Consensus 437 ~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~ 501 (590)
|+|++.++++.+||++++||||||||+||||||+|+|+.++ ...+..+..+..... .+.+ .++.
T Consensus 398 ~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (601)
T PF00133_consen 398 FYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCG-EVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGG 476 (601)
T ss_dssp ESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSE-EEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSS
T ss_pred EEcccchhhhhhhccccccchhhccCCCCccceeeecccCc-cccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999997633 333322222221110 0111 2456
Q ss_pred ceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEe
Q 007761 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRD 581 (590)
Q Consensus 502 ~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d 581 (590)
.+.|++||||||||||++|++++++|++++++|++|||+|++++|+||+++|++++++++.+++++.||++|++||+|+|
T Consensus 477 ~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld 556 (601)
T PF00133_consen 477 ELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLD 556 (601)
T ss_dssp EEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEE
T ss_pred ceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccc
Confidence 78999999999999999999999999987789999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccC
Q 007761 582 SQVKKCQKH 590 (590)
Q Consensus 582 ~~G~KMSKS 590 (590)
.+|+|||||
T Consensus 557 ~~G~KMSKS 565 (601)
T PF00133_consen 557 EDGRKMSKS 565 (601)
T ss_dssp TTSSB-BTT
T ss_pred cceeecccC
Confidence 999999999
No 12
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.2e-127 Score=1127.98 Aligned_cols=528 Identities=25% Similarity=0.435 Sum_probs=483.4
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~ 136 (590)
++.|++ ++|++|+++|++++.|++..+ +++++|++++||||+||.|||||+++++++|+++||+||+||+|++++||
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~Gw 84 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGW 84 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCcc
Confidence 467898 899999999999999998754 35677999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHc-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHH
Q 007761 137 DHAGIATQLVVEKMLAAE-GIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (590)
Q Consensus 137 D~~Gl~ie~~ve~~~~~~-g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (590)
||||+|||.++++.+... .....++++++|.+.|++|+.++.+.+++++++||+++||+++|.|+++.|.+.++++|.+
T Consensus 85 D~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~ 164 (1159)
T PLN02882 85 DCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQ 164 (1159)
T ss_pred CCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHH
Confidence 999999998887665221 1123458999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEcceeEEEeccCCcccCCccc--cccccCCeEEEEEEEecCC--CceEEEeecCCCccCCCceEEeCCCCcc
Q 007761 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNPQDEH 291 (590)
Q Consensus 216 L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~~~~~~~~--~~~l~v~Tt~Petl~~~~~v~v~p~~~~ 291 (590)
|+++|+||++.++|+|||.|+|+||++|+ +|++..++++|++|++.+. +.+++||||||||||||+||+|||++++
T Consensus 165 l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y 244 (1159)
T PLN02882 165 LFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTY 244 (1159)
T ss_pred HHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcE
Confidence 99999999999999999999999998888 7999999999999999764 3799999999999999999999999761
Q ss_pred ------------------c-------------------------------ccccCcEEEccCC-----CCCeeeEeecCc
Q 007761 292 ------------------Y-------------------------------SQFIGMMAIVPMT-----YGRHVPIISDKY 317 (590)
Q Consensus 292 ------------------y-------------------------------~~l~G~~~~~P~~-----~~~~ipii~~~~ 317 (590)
| ++|+|++|.+|+. .++.+|||+++|
T Consensus 245 ~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~ 324 (1159)
T PLN02882 245 VKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDY 324 (1159)
T ss_pred EEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCc
Confidence 1 1578999987762 146899999999
Q ss_pred cccCCCCCceecCCCCChhhHHHHHHhCC-----CeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeee
Q 007761 318 VDKEFGTGVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEP 392 (590)
Q Consensus 318 V~~~~GTG~V~~~P~h~~~D~~~~~~~~l-----~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~ 392 (590)
|++++|||+||+|||||++||++|+++|| ++++++|++|+|+++++.|.|+.++||++.|++.|+++|++++.++
T Consensus 325 V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~ 404 (1159)
T PLN02882 325 VTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGS 404 (1159)
T ss_pred cCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceee
Confidence 99999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred ccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchH-HHHHHHHHhcCCCeeeeeecCcccccCee
Q 007761 393 HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVW 471 (590)
Q Consensus 393 ~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~-~~~~~~~l~~l~DW~ISRqr~WG~pIPi~ 471 (590)
+.|+||||||||+|+++++++||||+++++++++++++ ++|+|+|++. ++++.+||++++||||||||+||||||+|
T Consensus 405 ~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~--~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw 482 (1159)
T PLN02882 405 ITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN--KQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIW 482 (1159)
T ss_pred eecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh--CCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceE
Confidence 99999999999999999999999999999999999976 4799999999 58999999999999999999999999999
Q ss_pred EEcCCcccEEEeCChhHHHHHhhh-----------------hcCC-CcceeecCceeEEeecCCchhhhhcCCCCCChhh
Q 007761 472 YIVGKEEEYIVARNADEALEKAHQ-----------------KYGK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD 533 (590)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~ 533 (590)
+|++ ++..++..+.+++.+.... .++. ...++|++||||||||||+||+++++||.++.++
T Consensus 483 ~~~~-~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~ 561 (1159)
T PLN02882 483 ISDD-GEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKEL 561 (1159)
T ss_pred EeCC-CCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhH
Confidence 9965 4457777888776654311 0111 1369999999999999999999999999877688
Q ss_pred hhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 534 FKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 534 f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
|+++||+|++++|+||+||||++|+++++.++++.||++|++||||+|++|+|||||
T Consensus 562 f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKS 618 (1159)
T PLN02882 562 FEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKS 618 (1159)
T ss_pred hhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999
No 13
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-128 Score=1087.88 Aligned_cols=524 Identities=32% Similarity=0.545 Sum_probs=480.1
Q ss_pred CCCCCCh-HHHHHHHHHHHhcCCCCCCCC---CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 59 LPKTFDF-TSEERIYNWWESQGYFKPNFE---RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~---~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
-|+++++ +.|++++++|+++++|++..+ ++++.|++++||||+||.+|||||+|.+++|++.||+.|+||+|.+++
T Consensus 14 fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~p 93 (933)
T COG0060 14 FPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVP 93 (933)
T ss_pred CCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCC
Confidence 3789997 899999999999999998763 567889999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHH
Q 007761 135 GTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFI 214 (590)
Q Consensus 135 G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~ 214 (590)
||||||||||.++++.+...+...++++.++|++.|++++.++++.++++++|||++.||+++|.|+++.|.+.+.++|.
T Consensus 94 GWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~ 173 (933)
T COG0060 94 GWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFK 173 (933)
T ss_pred CCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHH
Confidence 99999999999999887654455677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecC----CCceEEEeecCCCccCCCceEEeCCCCc
Q 007761 215 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG----RSDFLTIATTRPETLFGDVALAVNPQDE 290 (590)
Q Consensus 215 ~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~----~~~~l~v~Tt~Petl~~~~~v~v~p~~~ 290 (590)
+|+++|+||++.++|+|||+|+|+||++||+|.+..++++|++|++.+ .+.+|+||||||||||+|.||+|||+-+
T Consensus 174 ~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~ 253 (933)
T COG0060 174 ELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLD 253 (933)
T ss_pred HHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcc
Confidence 999999999999999999999999999999999999999999999974 5789999999999999999999999865
Q ss_pred c---------c---------------------------ccccCcEEEccCCC---CCeeeEeecCccccCCCCCceecCC
Q 007761 291 H---------Y---------------------------SQFIGMMAIVPMTY---GRHVPIISDKYVDKEFGTGVLKISP 331 (590)
Q Consensus 291 ~---------y---------------------------~~l~G~~~~~P~~~---~~~ipii~~~~V~~~~GTG~V~~~P 331 (590)
+ | ++|.|.+|.|||.+ .+..||+.++||+.+.|||+||++|
T Consensus 254 Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAP 333 (933)
T COG0060 254 YVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAP 333 (933)
T ss_pred eEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCC
Confidence 3 1 35789999999964 6899999999999999999999999
Q ss_pred CCChhhHHHHHHhC-CCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEe
Q 007761 332 GHDHNDYLLARKLG-LPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (590)
Q Consensus 332 ~h~~~D~~~~~~~~-l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (590)
|||++||++|+++| +|+.++||++|+++++.+.|.|+.++||++.|++.|+++|+|++.+.+.|+|||||||++|+++|
T Consensus 334 ghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyR 413 (933)
T COG0060 334 GHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYR 413 (933)
T ss_pred CCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEe
Confidence 99999999999999 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHHH
Q 007761 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (590)
Q Consensus 411 ~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~ 490 (590)
.++|||++++++++++++.++ +++|+|++.++++.+||++++||||||||+||+|||+|+|++. +..++. .+++.
T Consensus 414 At~QWFi~v~~~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~-g~~~~~--~~El~ 488 (933)
T COG0060 414 ATPQWFVSVDKLRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKET-GEILVI--TEELE 488 (933)
T ss_pred ecchheeEHHHHHHHHHHHHh--cceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCC-CCeecc--HHHHH
Confidence 999999999999999998886 7999999999999999999999999999999999999999763 333332 22222
Q ss_pred HHhh---------hh-----------c-CCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeech
Q 007761 491 EKAH---------QK-----------Y-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDI 549 (590)
Q Consensus 491 ~~~~---------~~-----------~-~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Di 549 (590)
+... .. + .++..++|++||||||||||.+++++++ |... ..|..++ +|++++|+||
T Consensus 489 e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~-~~~~~~~-aD~~lEGsDQ 565 (933)
T COG0060 489 ELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PREN-LKFPALF-ADFYLEGSDQ 565 (933)
T ss_pred HHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Cccc-ccCcccc-CcEEEEeccc
Confidence 2111 00 1 2244899999999999999999999988 6554 3344444 6999999999
Q ss_pred hhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 550 LFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 550 l~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+||||++++++|++++++.||++|++|||++|++|+|||||
T Consensus 566 ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKS 606 (933)
T COG0060 566 TRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKS 606 (933)
T ss_pred cchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCcccc
Confidence 99999999999999999999999999999999999999998
No 14
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.8e-125 Score=1098.23 Aligned_cols=518 Identities=31% Similarity=0.527 Sum_probs=473.1
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~ 136 (590)
|+++++ ++|++||++|++++.|++..+ .++++|+|++||||+||.|||||++|++++|+++||+||+|++|++++||
T Consensus 16 ~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~ 95 (912)
T PRK05743 16 PMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGW 95 (912)
T ss_pred CCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCc
Confidence 577897 899999999999999997532 45678999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHH
Q 007761 137 DHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (590)
Q Consensus 137 D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (590)
||||+|||.++++.+ |....++++++|++.|++|++++.+.++++|++||+++||+++|+|+++.|.+.++++|.+|
T Consensus 96 D~~Glpie~~~ek~l---~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l 172 (912)
T PRK05743 96 DCHGLPIELKVEKKL---GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKM 172 (912)
T ss_pred CCCccHhHHHHHHHc---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHH
Confidence 999999999887754 55567788999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCC-------CceEEEeecCCCccCCCceEEeCCCC
Q 007761 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR-------SDFLTIATTRPETLFGDVALAVNPQD 289 (590)
Q Consensus 217 ~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~-------~~~l~v~Tt~Petl~~~~~v~v~p~~ 289 (590)
+++|+||++.++|+|||.|+|+|||+||+|++..++++||+|++.+. +.+|+|||||||||+||+||+|||++
T Consensus 173 ~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~ 252 (912)
T PRK05743 173 AKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEF 252 (912)
T ss_pred HHCCCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCC
Confidence 99999999999999999999999999999999999999999999763 47899999999999999999999998
Q ss_pred c---------cc---------------------------ccccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCC
Q 007761 290 E---------HY---------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGH 333 (590)
Q Consensus 290 ~---------~y---------------------------~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h 333 (590)
+ +| ++|+|++|.||++ ++++|||+++||++++|||+||+||+|
T Consensus 253 ~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~-~~~~pvi~~~~V~~~~GTG~Vh~aPah 331 (912)
T PRK05743 253 DYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY-DRDSPVILGDHVTLDAGTGLVHTAPGH 331 (912)
T ss_pred eeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC-CCeeeEeCCCccCCCCCcCeEEeCCCC
Confidence 4 56 3689999999995 789999999999999999999999999
Q ss_pred ChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeec
Q 007761 334 DHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSK 413 (590)
Q Consensus 334 ~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~ 413 (590)
|++||++|++|||++++++|++|++++..|+|.|+.+++|+++|++.|+++|++++.+++.|+||||||||+||++++++
T Consensus 332 g~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~ 411 (912)
T PRK05743 332 GEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATP 411 (912)
T ss_pred CHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccch--HHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCC-hh---
Q 007761 414 QWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARN-AD--- 487 (590)
Q Consensus 414 QWFi~~~~--~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~-~~--- 487 (590)
||||++++ ++++++++++ +|+|+|+++++++.+||++++||||||||+||+|||+|+|+++ +..++..+ ..
T Consensus 412 QWFi~~~~~~~k~~~l~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~-g~~~~~~~~~~~i~ 488 (912)
T PRK05743 412 QWFISMDKKGLREQALKAIE--KVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKET-GELHPTPELIEHVA 488 (912)
T ss_pred cccEeCChHHHHHHHHHHHc--ccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCC-CcEeecHHHHHHHH
Confidence 99999998 9999999996 5999999999999999999999999999999999999999752 33333221 11
Q ss_pred HHHHHhhh----------hcC-CCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHH
Q 007761 488 EALEKAHQ----------KYG-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVAR 556 (590)
Q Consensus 488 ~~~~~~~~----------~~~-~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~ 556 (590)
+..+.... -++ ++..+.|++||||||||||+++++.+++ . . +++||+|+|++|+||+||||++
T Consensus 489 ~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~--~--~--~~~~P~Dl~~~G~Di~r~Wf~~ 562 (912)
T PRK05743 489 KLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQ--R--P--ELGYPADLYLEGSDQHRGWFQS 562 (912)
T ss_pred HHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcC--c--c--ccCCCceEEEecccccchHHHH
Confidence 11111100 012 2346899999999999999999988774 1 1 2689999999999999999999
Q ss_pred HHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 557 MVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 557 ~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+++.++++.++.||++|++||||+|.+|+|||||
T Consensus 563 ~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKS 596 (912)
T PRK05743 563 SLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKS 596 (912)
T ss_pred HHHHHHHhcCCCccceeEEeeeEECCCCCCCCCC
Confidence 9999999999999999999999999999999999
No 15
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-124 Score=1096.62 Aligned_cols=520 Identities=27% Similarity=0.448 Sum_probs=472.3
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~ 136 (590)
|+++++ ++|.+||++|++++.|++..+ .++++|+|++||||+||.|||||++|++++|+++||+||+||+|++++||
T Consensus 21 ~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGw 100 (961)
T PRK13804 21 PMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGW 100 (961)
T ss_pred CCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Confidence 678897 899999999999999998653 35678999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHH
Q 007761 137 DHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (590)
Q Consensus 137 D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (590)
||||+|||.++++.+...|+...++++++|++.|++|+.++++.++++|++||++.||+++|.|+++.|.+.++++|.+|
T Consensus 101 D~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l 180 (961)
T PRK13804 101 DCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKF 180 (961)
T ss_pred CCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHH
Confidence 99999999999888777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCC------CceEEEeecCCCccCCCceEEeCCCCc
Q 007761 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAVNPQDE 290 (590)
Q Consensus 217 ~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~------~~~l~v~Tt~Petl~~~~~v~v~p~~~ 290 (590)
+++|+||++.++|+|||.|+|+|||+||+|++..++++||+|++.+. +.+++|||||||||+||+||+|||+++
T Consensus 181 ~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~ 260 (961)
T PRK13804 181 AAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIE 260 (961)
T ss_pred HHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCc
Confidence 99999999999999999999999999999999999999999999652 468999999999999999999999973
Q ss_pred -------------------cc-------------------c--------cccCcEEEccCCCCC-----eeeEeecCccc
Q 007761 291 -------------------HY-------------------S--------QFIGMMAIVPMTYGR-----HVPIISDKYVD 319 (590)
Q Consensus 291 -------------------~y-------------------~--------~l~G~~~~~P~~~~~-----~ipii~~~~V~ 319 (590)
+| + +|+|++|.||++ ++ .+|||+++||+
T Consensus 261 Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~-~~~~~~~~~pvi~~~~V~ 339 (961)
T PRK13804 261 YGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLD-GLDGYEFEVPVLDGDHVT 339 (961)
T ss_pred eEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCC-CcccccceeEEEecCccC
Confidence 32 2 689999999995 56 89999999999
Q ss_pred cCCCCCceecCCCCChhhHHHHHHhCC-CeeEeecCCCceecccCc--------cCCCCHHHHHHHHHHHHHHcCCccee
Q 007761 320 KEFGTGVLKISPGHDHNDYLLARKLGL-PILNVMNKDGTLNEVAGL--------FRGLDRFEARKKLWSDLEETGLAVKK 390 (590)
Q Consensus 320 ~~~GTG~V~~~P~h~~~D~~~~~~~~l-~~~~~i~~~G~~~~~~~~--------~~G~~~~~a~~~i~~~L~~~g~~~~~ 390 (590)
+++|||+||+||+||++||++|++||| |+.++||++|+|+++++. |.|+.+.|||+.|++.|+++|++++.
T Consensus 340 ~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~ 419 (961)
T PRK13804 340 DDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLAR 419 (961)
T ss_pred CCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999 999999999999988877 89999999999999999999999999
Q ss_pred eeccccCcccCCCCceeEEeeecccccccch-------HHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecC
Q 007761 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP-------LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLW 463 (590)
Q Consensus 391 ~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~-------~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~ 463 (590)
+++.|+||||||||+||++++++||||++++ ++++++++++ +|+|+|+++++++.+||++++||||||||+
T Consensus 420 ~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~ 497 (961)
T PRK13804 420 GRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAID--KTRFVPAAGQNRLYNMIEDRPDWVISRQRA 497 (961)
T ss_pred cceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHh--ccEEECHHHHHHHHHHHhcCccceeeeecc
Confidence 9999999999999999999999999999998 9999999996 699999999999999999999999999999
Q ss_pred cccccCeeEEcCCcccEEEeC-Chh---HHHHHh----------hhhc----CCCcceeecCceeEEeecCCchhhhhcC
Q 007761 464 WGHRIPVWYIVGKEEEYIVAR-NAD---EALEKA----------HQKY----GKNVEIYQDPDVLDTWFSSALWPFSTLG 525 (590)
Q Consensus 464 WG~pIPi~~~~~~~~~~~~~~-~~~---~~~~~~----------~~~~----~~~~~~~~~~dvlDvWfdS~~~~~~~~~ 525 (590)
||||||+|+|++ + ..++.. ... ++.+.. .+.+ +++..++|++||||||||||++++..++
T Consensus 498 WG~PIP~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~ 575 (961)
T PRK13804 498 WGVPIPIFVAED-G-EILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLE 575 (961)
T ss_pred CCceeeEEEcCC-C-CEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCcccccc
Confidence 999999999953 2 222221 111 111111 0111 1344699999999999999988766543
Q ss_pred CCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 526 WPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 526 ~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+ +++| .||+|+|++|+||+||||+++++++..++++.||++|++||+|+|.+|+|||||
T Consensus 576 ~----~~~~--~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKS 634 (961)
T PRK13804 576 D----RPDL--KWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKS 634 (961)
T ss_pred C----Cccc--CCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCC
Confidence 2 1234 489999999999999999999999999999999999999999999999999999
No 16
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.5e-123 Score=1088.53 Aligned_cols=517 Identities=29% Similarity=0.495 Sum_probs=465.0
Q ss_pred CCh-HHHHHHHHHHHhcCCCCCCCC-CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC
Q 007761 63 FDF-TSEERIYNWWESQGYFKPNFE-RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG 140 (590)
Q Consensus 63 ~~~-~~E~~~~~~W~~~~~f~~~~~-~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~G 140 (590)
-++ ++|++||++|++++.|++..+ .++++|+|++||||+||.|||||++|++++|+++||+||+||+|++++||||||
T Consensus 3 ~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hG 82 (974)
T PLN02843 3 ANSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHG 82 (974)
T ss_pred CChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCC
Confidence 354 889999999999999998654 246779999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcC
Q 007761 141 IATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKG 220 (590)
Q Consensus 141 l~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG 220 (590)
+|||.++++.+.+ .+..++++++|++.|++|++++.+.|+++|++||++.||+++|+|++++|.+.++++|.+|+++|
T Consensus 83 lpie~~vek~l~~--~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 83 LPIELKVLQSLDQ--EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred cHHHHHHHHHhch--hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 9999988776532 14567889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcceeEEEeccCCcccCCccccccc-cCCeEEEEEEEecCC-------------CceEEEeecCCCccCCCceEEeC
Q 007761 221 LIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGR-------------SDFLTIATTRPETLFGDVALAVN 286 (590)
Q Consensus 221 ~iY~~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~~~~~~~~-------------~~~l~v~Tt~Petl~~~~~v~v~ 286 (590)
+||++.++|+|||+|+|+|||+||+|++ ..++++||+|++.+. +.+|+||||||||||||+||+||
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVn 240 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVN 240 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEEC
Confidence 9999999999999999999999999997 579999999999753 24899999999999999999999
Q ss_pred CCCc-------------c-----------------------------------------------cccccCcEEEccCCC
Q 007761 287 PQDE-------------H-----------------------------------------------YSQFIGMMAIVPMTY 306 (590)
Q Consensus 287 p~~~-------------~-----------------------------------------------y~~l~G~~~~~P~~~ 306 (590)
|+++ | +++|+|++|.||+.
T Consensus 241 P~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~- 319 (974)
T PLN02843 241 DKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLY- 319 (974)
T ss_pred CCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCC-
Confidence 9954 1 15789999999995
Q ss_pred CCeeeEee-cCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHH-HHHHHHHHHHHHc
Q 007761 307 GRHVPIIS-DKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRF-EARKKLWSDLEET 384 (590)
Q Consensus 307 ~~~ipii~-~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~-~a~~~i~~~L~~~ 384 (590)
++++||+. ++||++++|||+||+||+||++||++|++|||++++++|++|++++++|.|.|+.+. +||+.|++.|+++
T Consensus 320 ~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~ 399 (974)
T PLN02843 320 NRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEA 399 (974)
T ss_pred CCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHC
Confidence 67999974 899999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred CCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCc
Q 007761 385 GLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWW 464 (590)
Q Consensus 385 g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~W 464 (590)
|++++.+++.|+|||||||++||++++++||||++++++++++++++ +|+|+|+.+++++.+||++++||||||||+|
T Consensus 400 g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQr~W 477 (974)
T PLN02843 400 GSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAID--KVKWIPAQGENRIRAMVSGRSDWCISRQRTW 477 (974)
T ss_pred CCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHh--ccEEEChHHHHHHHHHHhcCcceeeeecccc
Confidence 99999999999999999999999999999999999999999999996 6999999999999999999999999999999
Q ss_pred ccccCeeEEcCCcccEEEeCChhHHHHHh-----------------hhhc-CCCcceeecCceeEEeecCCchhhhhcCC
Q 007761 465 GHRIPVWYIVGKEEEYIVARNADEALEKA-----------------HQKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGW 526 (590)
Q Consensus 465 G~pIPi~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~dvlDvWfdS~~~~~~~~~~ 526 (590)
|||||+|+|...++-++...+.++..+.. ...+ ++...+.|++||||||||||+++....++
T Consensus 478 G~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~ 557 (974)
T PLN02843 478 GVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGS 557 (974)
T ss_pred ccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhcc
Confidence 99999999965333343334443332111 0011 11335899999999999999987766542
Q ss_pred CCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 527 PDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 527 ~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.++.+||+|++++|+||+||||+++++.++.+.++.||++|++||+++|.+|+|||||
T Consensus 558 ------~~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKS 615 (974)
T PLN02843 558 ------REGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKS 615 (974)
T ss_pred ------ccccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCC
Confidence 1234699999999999999999999999999999999999999999999999999999
No 17
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.5e-123 Score=1075.62 Aligned_cols=520 Identities=36% Similarity=0.637 Sum_probs=483.7
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~ 138 (590)
++.|++ ++|++||++|++++.|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||+
T Consensus 7 ~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~ 86 (800)
T PRK13208 7 PKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDD 86 (800)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCC
Confidence 678998 9999999999999999987666678899999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHh
Q 007761 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (590)
Q Consensus 139 ~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (590)
||+|||.++++. .|.++.++++++|++.|++|++++.+.|+++|++||+++||+++++|++++|.++++++|.+|++
T Consensus 87 ~Glpie~~~ek~---~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~ 163 (800)
T PRK13208 87 NGLPTERKVEKY---YGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYK 163 (800)
T ss_pred CcchHHHHHHHH---hCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHH
Confidence 999988776653 38888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCc
Q 007761 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGM 298 (590)
Q Consensus 219 kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~ 298 (590)
+|+||++.++|+|||.|+|+|||+||+|++..+.++||+|++.+ +.+|+|||||||||+||+||+|||++++|++|+|+
T Consensus 164 ~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~-~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~ 242 (800)
T PRK13208 164 KGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVED-GEEIEIATTRPELLPACVAVVVHPDDERYKHLVGK 242 (800)
T ss_pred CCCeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecC-CCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCC
Confidence 99999999999999999999999999999999999999999975 56999999999999999999999999999999999
Q ss_pred EEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHH
Q 007761 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLW 378 (590)
Q Consensus 299 ~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~ 378 (590)
++.+|++ ++++|||+++||++++|||+||+||+||++||++++++||++++++|++|++++++|.|+|+++++||++|+
T Consensus 243 ~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~ 321 (800)
T PRK13208 243 TAIVPLF-GVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIV 321 (800)
T ss_pred EEEcCCC-CCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHH
Confidence 9999995 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCC-Cee
Q 007761 379 SDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK-DWC 457 (590)
Q Consensus 379 ~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~-DW~ 457 (590)
+.|+++|++++.+++.|++|+|||||++|++++++||||++++++++++++++ +++|+|++.++++.+||++++ |||
T Consensus 322 ~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~l~~~~~DW~ 399 (800)
T PRK13208 322 EDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGK--EINWYPEHMRVRLENWIEGLNWDWC 399 (800)
T ss_pred HHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhc--CcEEECHHHHHHHHHHHHhcCCCce
Confidence 99999999999999999999999999999999999999999999999999995 589999999999999999988 999
Q ss_pred eeeecCcccccCeeEEcCCcccEEEeCChhHH----HHHhhh-----hcCCCcceeecCceeEEeecCCchhhhhcCCCC
Q 007761 458 ISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----LEKAHQ-----KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD 528 (590)
Q Consensus 458 ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~ 528 (590)
|||||+||||||+|+|+++ +..+++. +++. ...+.. .++. ..+.|++||||||||||++|++.++||.
T Consensus 400 ISRqr~WG~pIP~~~~~~~-g~~~~~~-~~~l~~~~~~d~~~~~~~~~~g~-~~~~~~~dvlD~WfdS~~~~~~~~~~~~ 476 (800)
T PRK13208 400 ISRQRYFGTPIPVWYCKDC-GHPILPD-EEDLPVDPTKDEPPGYKCPQCGS-PGFEGETDVMDTWATSSITPLIVTGWER 476 (800)
T ss_pred eeeccccCCcceEEEeCCC-CCeecCc-hhhhccCchhhccccccccccCC-cCEEecCCEEEEEEeCCchHHHHhCCCC
Confidence 9999999999999999763 3333321 1111 111111 1121 3589999999999999999999999998
Q ss_pred CChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 529 VSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 529 ~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+. ++|++|||+|++++|+||+++|++++++.+..+.++.||++|++||+|+|.+|+|||||
T Consensus 477 ~~-~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS 537 (800)
T PRK13208 477 DE-DLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKS 537 (800)
T ss_pred Ch-hhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCC
Confidence 65 67999999999999999999999999999999999999999999999999999999999
No 18
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=8.2e-123 Score=1081.70 Aligned_cols=526 Identities=32% Similarity=0.550 Sum_probs=476.8
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~ 136 (590)
++.|++ ++|++||++|++++.|++..+ .++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||
T Consensus 3 ~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~ 82 (861)
T TIGR00392 3 PMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGW 82 (861)
T ss_pred CCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCc
Confidence 567998 899999999999999997643 45778999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHH
Q 007761 137 DHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (590)
Q Consensus 137 D~~Gl~ie~~ve~~~~~~g~-~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (590)
||||+|||.++++.+...+. +....++++|++.|++|+.++++.++++|++||+++||+++|+|++|.|.+.++++|.+
T Consensus 83 D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~ 162 (861)
T TIGR00392 83 DTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKE 162 (861)
T ss_pred CCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999998876532211 22234678999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEcceeEEEeccCCcccCCccccccc----cCCeEEEEEEEecCCCc--------eEEEeecCCCccCCCceE
Q 007761 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE----EPGTLYYIKYRVAGRSD--------FLTIATTRPETLFGDVAL 283 (590)
Q Consensus 216 L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~----~~~~~~~~~~~~~~~~~--------~l~v~Tt~Petl~~~~~v 283 (590)
|+++|+||++.++|+|||.|+|+|||+||++++ ..++++||+|++.+.+. +|+|||||||||+||+||
T Consensus 163 l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai 242 (861)
T TIGR00392 163 AHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAI 242 (861)
T ss_pred HHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeee
Confidence 999999999999999999999999999999987 78999999999976544 899999999999999999
Q ss_pred EeCCCCc-----------cc--------------------------ccccCcEEEccCCCCCee------eE-eecCccc
Q 007761 284 AVNPQDE-----------HY--------------------------SQFIGMMAIVPMTYGRHV------PI-ISDKYVD 319 (590)
Q Consensus 284 ~v~p~~~-----------~y--------------------------~~l~G~~~~~P~~~~~~i------pi-i~~~~V~ 319 (590)
+|||+++ +| .+|+|++|.||++ ++++ |+ ++++||+
T Consensus 243 ~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~-~~~~~~~~~~p~v~~~~~V~ 321 (861)
T TIGR00392 243 AVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLY-DFVSQLKEGAPVVIGGDHVT 321 (861)
T ss_pred eeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCC-ccccccccCCcEEeCCCCCC
Confidence 9999965 33 4579999999995 6677 86 5669999
Q ss_pred cCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccC-------ccCCCCHHHHHHHHHHHHHHcCCcceeee
Q 007761 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-------LFRGLDRFEARKKLWSDLEETGLAVKKEP 392 (590)
Q Consensus 320 ~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~-------~~~G~~~~~a~~~i~~~L~~~g~~~~~~~ 392 (590)
+++|||+||+||+||++||++|+++||++++++|++|+++++.+ .|+|+++.+||++|++.|+++|++++.++
T Consensus 322 ~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~ 401 (861)
T TIGR00392 322 TEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEK 401 (861)
T ss_pred CCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeee
Confidence 99999999999999999999999999999999999999876544 58999999999999999999999999999
Q ss_pred ccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeE
Q 007761 393 HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY 472 (590)
Q Consensus 393 ~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~ 472 (590)
+.|+||+|||||+||++++++||||++++++++++++++ +|+|+|++.++++.+||++++||||||||+||||||+|+
T Consensus 402 ~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~--~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~ 479 (861)
T TIGR00392 402 ITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK--KVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWY 479 (861)
T ss_pred EecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhC--CcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEE
Confidence 999999999999999999999999999999999999995 699999999999999999999999999999999999999
Q ss_pred EcCCcccEEEeCChhHHHHHhhh--------------------hcCCCcceeecCceeEEeecCCchhhhhcCCCCCChh
Q 007761 473 IVGKEEEYIVARNADEALEKAHQ--------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAD 532 (590)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~ 532 (590)
|+++++ .++..+.++..+.+.. .+++...+.|++||||||||||++|++..+||.+. .
T Consensus 480 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~-~ 557 (861)
T TIGR00392 480 CEDTGE-PIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFEN-E 557 (861)
T ss_pred ECCCCC-CcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCc-c
Confidence 976443 3677777766542210 12222578999999999999999999999998765 5
Q ss_pred hhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 533 DFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 533 ~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+|++|||+|++++|+||+||||+++++.++.+.+..||++|++||||+|.+|+|||||
T Consensus 558 ~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKS 615 (861)
T TIGR00392 558 KFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKS 615 (861)
T ss_pred hhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCC
Confidence 6999999999999999999999999999998889999999999999999999999999
No 19
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=3e-110 Score=983.85 Aligned_cols=523 Identities=23% Similarity=0.385 Sum_probs=449.7
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCCC----CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFER----GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~----~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
++++++ ++|++||++|+++++|+...+. ++++|++++||||+||.|||||++|++++|+++||+||+||+|+|++
T Consensus 10 ~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 10 ARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred chhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 577887 8999999999999999998653 23779999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHH---HHcCCCc----------------------cccCHHHHHHHHHHHHHH-------------
Q 007761 135 GTDHAGIATQLVVEKML---AAEGIKR----------------------VELSRDEFTKRVWEWKEK------------- 176 (590)
Q Consensus 135 G~D~~Gl~ie~~ve~~~---~~~g~~~----------------------~~~~~e~f~~~~~~~~~~------------- 176 (590)
||||||+||+..+++.. ++.|..+ .+.++++|++.|++++.+
T Consensus 90 G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~ 169 (1084)
T PLN02959 90 AFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRS 169 (1084)
T ss_pred CcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhh
Confidence 99999999999998764 3345332 234567888888777644
Q ss_pred --------------------HHHHHHHHHHHhCCcCCCCCccccCC--hhHHHHHHHHHHHHHhcCceEEcceeEEEecc
Q 007761 177 --------------------YGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPN 234 (590)
Q Consensus 177 --------------------~~~~~~~~l~~LGi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~ 234 (590)
+...++++|++||+++||+|+|+|+| |.|.++|+|+|.+|+++|+||++.++|+|||.
T Consensus 170 ~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~ 249 (1084)
T PLN02959 170 FGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPL 249 (1084)
T ss_pred cCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCC
Confidence 33778999999999999999999999 88999999999999999999999999999999
Q ss_pred CCcccCCccccccccCCeEEE--EEEEec-----------CCCceEEEeecCCCccCCCceEEeCCCCcc----------
Q 007761 235 LQTAVSDLEVEYSEEPGTLYY--IKYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDEH---------- 291 (590)
Q Consensus 235 ~~t~lsd~Ev~~~~~~~~~~~--~~~~~~-----------~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~---------- 291 (590)
|+|+|||+|+++++..+++.| |+|++. +.+.++++||||||||+||+||+|||+.++
T Consensus 250 ~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~ 329 (1084)
T PLN02959 250 DGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEV 329 (1084)
T ss_pred CCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeE
Confidence 999999999999998888777 567753 345789999999999999999999999761
Q ss_pred ------------c------------------ccccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHH-
Q 007761 292 ------------Y------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL- 340 (590)
Q Consensus 292 ------------y------------------~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~- 340 (590)
| ++|+|+++.+|+++.+.+||+++.+|++++|||+||+||+||++||.+
T Consensus 330 ~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~ 409 (1084)
T PLN02959 330 FILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMAL 409 (1084)
T ss_pred EEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHH
Confidence 3 468999999999654449999999999999999999999999999998
Q ss_pred ---------HHHhCC--------CeeEeecCCCc----------------------------------eecc---cCccC
Q 007761 341 ---------ARKLGL--------PILNVMNKDGT----------------------------------LNEV---AGLFR 366 (590)
Q Consensus 341 ---------~~~~~l--------~~~~~i~~~G~----------------------------------~~~~---~~~~~ 366 (590)
+++||| +++++||.+|. +.+. +|.|+
T Consensus 410 ~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~ 489 (1084)
T PLN02959 410 SDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYA 489 (1084)
T ss_pred HhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcC
Confidence 577887 45778777653 2222 68899
Q ss_pred CCCHHHHHHHHHHHHHHcCCcce-eeeccccCcccCCCCceeEEeeecccccccc--hHHHHHHHHHHcCCceEecchHH
Q 007761 367 GLDRFEARKKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTME--PLAEKALHAVEKGELTIMPERFE 443 (590)
Q Consensus 367 G~~~~~a~~~i~~~L~~~g~~~~-~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~--~~~~~~~~~i~~~~i~~~P~~~~ 443 (590)
|+.|.+||++|+++|+++|+++. .++ ..|+|+|||++|++++++||||+++ +++++++++++ +|+|+|++++
T Consensus 490 G~~v~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~--~v~~~P~~~~ 564 (1084)
T PLN02959 490 GRKVQEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLS--KMNLYSDETR 564 (1084)
T ss_pred CcCHHHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHc--ccEEECHHHH
Confidence 99999999999999999998874 554 3589999999999999999999998 69999999995 6999999999
Q ss_pred HHHHHHHhcCCCeeeeeecCcccccCe---eEEcCCcc--cEEEeCChhHHHHHhhhhcCCC---cceee-cCceeEEee
Q 007761 444 KIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEE--EYIVARNADEALEKAHQKYGKN---VEIYQ-DPDVLDTWF 514 (590)
Q Consensus 444 ~~~~~~l~~l~DW~ISRqr~WG~pIPi---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~dvlDvWf 514 (590)
+++.+||++++||||||||+||||||| |++++.++ -|++..+.++.+.... .+|.+ ....+ .+||||+||
T Consensus 565 ~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~-~~g~~~~~i~~~~~~~dV~D~wF 643 (1084)
T PLN02959 565 HGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGD-MYGKDKSSIKPEQMTDEVWDFVF 643 (1084)
T ss_pred HHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhh-ccCCccccCChhhcCccceeEee
Confidence 999999999999999999999999994 44554333 3666667666655422 12211 11112 689999999
Q ss_pred cCCchhhhhcCCCCCC----hhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCC-cEEEEeceEEeCCCCcccc
Q 007761 515 SSALWPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQVKKCQK 589 (590)
Q Consensus 515 dS~~~~~~~~~~~~~~----~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf-~~v~~hG~v~d~~G~KMSK 589 (590)
+||+||+++ +||... +++|++|||+|++++|+||+++|++++++.+.+++++.|| +.|++||||+ .+|+||||
T Consensus 644 ~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G~KMSK 721 (1084)
T PLN02959 644 CGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNSEKMSK 721 (1084)
T ss_pred cCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCCcCccc
Confidence 999999987 888753 5789999999999999999999999999999999999999 6799999999 89999999
Q ss_pred C
Q 007761 590 H 590 (590)
Q Consensus 590 S 590 (590)
|
T Consensus 722 S 722 (1084)
T PLN02959 722 S 722 (1084)
T ss_pred c
Confidence 9
No 20
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=4.4e-106 Score=941.89 Aligned_cols=513 Identities=25% Similarity=0.393 Sum_probs=438.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHH
Q 007761 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (590)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~ 145 (590)
++|++||++|++++.|+.+.+ ++++|+|++||||+||.|||||+++++++|+++||+||+|++|++++|||+||+||+.
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~ 80 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHH
Confidence 589999999999999998754 4678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC------CccccCHHHHHHHH--HHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHH
Q 007761 146 VVEKMLAAEGI------KRVELSRDEFTKRV--WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (590)
Q Consensus 146 ~ve~~~~~~g~------~~~~~~~e~f~~~~--~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (590)
++++...+.+. ...++++++|.+.| ++|++++...++++|++||+++||+|+|+|++|.|.++|+++|.+|+
T Consensus 81 ~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~ 160 (938)
T TIGR00395 81 LAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK 160 (938)
T ss_pred HHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH
Confidence 88876543321 33467889999987 89999999999999999999999999999999999999999999999
Q ss_pred hcCceEEcceeEEEeccCCcccCCccccccccCC--eEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcc----
Q 007761 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG--TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH---- 291 (590)
Q Consensus 218 ~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~--~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~---- 291 (590)
++|+||++.++|+|||.|+|+|||+|+++++..+ ..++++|++.+.+.+|+|||||||||+|++||+|||++++
T Consensus 161 e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~ 240 (938)
T TIGR00395 161 ELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAE 240 (938)
T ss_pred HCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEE
Confidence 9999999999999999999999999999877554 6799999998766799999999999999999999999862
Q ss_pred -----------------c-------------ccccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHH
Q 007761 292 -----------------Y-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLA 341 (590)
Q Consensus 292 -----------------y-------------~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~ 341 (590)
| ++|+|+++.+|+ .++++||++++||++++|||+||+||+|+++||.++
T Consensus 241 ~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~-~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~ 319 (938)
T TIGR00395 241 VGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPV-VGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIAL 319 (938)
T ss_pred eCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCC-CCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHH
Confidence 3 579999999998 478999999999999999999999999999999998
Q ss_pred HHh--------------CCCeeEeecC---------------------------------------CCceecccCccCCC
Q 007761 342 RKL--------------GLPILNVMNK---------------------------------------DGTLNEVAGLFRGL 368 (590)
Q Consensus 342 ~~~--------------~l~~~~~i~~---------------------------------------~G~~~~~~~~~~G~ 368 (590)
+++ +++++++++. +|+|+++++.|+|+
T Consensus 320 ~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~ 399 (938)
T TIGR00395 320 EDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGM 399 (938)
T ss_pred HHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCc
Confidence 864 2444554431 46777778899999
Q ss_pred CHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEe-eecccccccc--hHHHHHHHHHHcCCceEecchHHHH
Q 007761 369 DRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTME--PLAEKALHAVEKGELTIMPERFEKI 445 (590)
Q Consensus 369 ~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~-~~~QWFi~~~--~~~~~~~~~i~~~~i~~~P~~~~~~ 445 (590)
++.+||++|+++|+++|+++..+.+.+ .|+|+|||++|+++ +++||||+++ +++++++++++ +++|+|++.++.
T Consensus 400 ~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~--~~~~~P~~~~~~ 476 (938)
T TIGR00395 400 KVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLE--GMRIIPEEVKNA 476 (938)
T ss_pred CHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHh--cCEEeCHHHHHH
Confidence 999999999999999999998766533 57788999999998 9999999999 59999999996 589999999999
Q ss_pred HHHHHhcCCCeeeeeecCcccccCe---eEEcCCccc--EEEeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchh
Q 007761 446 YNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWP 520 (590)
Q Consensus 446 ~~~~l~~l~DW~ISRqr~WG~pIPi---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~ 520 (590)
+.+||++++||||||||+||||||+ |++++.+++ |+...+..+.+... .++.. ....+++|+||+++..+
T Consensus 477 ~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~--~~~~~---~l~~ev~D~~~~~~~~~ 551 (938)
T TIGR00395 477 FEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKD--YYGNE---QMTDEFFDYIFLGKGDV 551 (938)
T ss_pred HHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhcc--CCChH---HCCcccCceEEECCCCh
Confidence 9999999999999999999999997 666554332 33333333322211 11111 12468999999875443
Q ss_pred hhhcCCCCC----ChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCC-cEEEEeceEEeCCCCccccC
Q 007761 521 FSTLGWPDV----SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 521 ~~~~~~~~~----~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf-~~v~~hG~v~d~~G~KMSKS 590 (590)
...++|.. .+++|++|||+|++++|+||+++|..+++++..++..+.|| +++++||||++ +|+|||||
T Consensus 552 -~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKS 624 (938)
T TIGR00395 552 -KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKS 624 (938)
T ss_pred -hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEe-CCccccCc
Confidence 33456543 14689999999999999999998777777766666555445 99999999996 99999999
No 21
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-101 Score=826.06 Aligned_cols=511 Identities=23% Similarity=0.378 Sum_probs=445.6
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCC-CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D 137 (590)
+.+++. ..+.++++.|....++.... +.++..|++.+ +||.||||||+|.|+.||+.||+.++|.+|++++|||
T Consensus 27 ~v~~Ns~gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwD 102 (937)
T KOG0433|consen 27 LVHFNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWD 102 (937)
T ss_pred ccccccccchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCC
Confidence 566775 55777888888887776543 34566799988 8999999999999999999999999999999999999
Q ss_pred CCCchHHH-HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHH
Q 007761 138 HAGIATQL-VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (590)
Q Consensus 138 ~~Gl~ie~-~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (590)
|||+|+|. ++.+.+.+. ...++.-+.++.++.++.+.++.+++.|+++||..||...|.|++|+|.....++|.+|
T Consensus 103 chGLPiEs~kalssl~~~---~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~l 179 (937)
T KOG0433|consen 103 CHGLPIESTKALSSLTES---EGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKL 179 (937)
T ss_pred cCCCchHHHHHhhhhhhc---cccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHH
Confidence 99999884 444433222 23445567888899999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEcceeEEEeccCCcccCCcccccccc-CCeEEEEEEEecC------------CCceEEEeecCCCccCCCceE
Q 007761 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE-PGTLYYIKYRVAG------------RSDFLTIATTRPETLFGDVAL 283 (590)
Q Consensus 217 ~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~-~~~~~~~~~~~~~------------~~~~l~v~Tt~Petl~~~~~v 283 (590)
+++|+||++.+||||+|+..|+|+++|+||.+. .++++||+|++.+ +..+.+||||+|||||+|.||
T Consensus 180 yekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai 259 (937)
T KOG0433|consen 180 YEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAI 259 (937)
T ss_pred HhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCcccccccee
Confidence 999999999999999999999999999999874 7899999999875 347899999999999999999
Q ss_pred EeCCCCcc-------------c--------------------------ccccCcEEEccCCCCCeeeEeecCccccCCCC
Q 007761 284 AVNPQDEH-------------Y--------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGT 324 (590)
Q Consensus 284 ~v~p~~~~-------------y--------------------------~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GT 324 (590)
++||+-.+ | ..|.|.+|.||+.++...|++.+++|+++.||
T Consensus 260 ~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GT 339 (937)
T KOG0433|consen 260 SVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGT 339 (937)
T ss_pred eeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCccc
Confidence 99997542 1 24778999999988889999999999999999
Q ss_pred CceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccC-ccCCCCHH-HHHHHHHHHHHHcCCcceeeeccccCcccCC
Q 007761 325 GVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRF-EARKKLWSDLEETGLAVKKEPHTLRVPRSQR 402 (590)
Q Consensus 325 G~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~-~~~G~~~~-~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r 402 (590)
|+||++||||++||.++.++|||+.+.+|++|+++.++| .+.|+.|. |..+.|+..|. +.+++.+++.|+||++||
T Consensus 340 GLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWR 417 (937)
T KOG0433|consen 340 GLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWR 417 (937)
T ss_pred ceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccc
Confidence 999999999999999999999999999999999999988 79999988 45667777777 888999999999999999
Q ss_pred CCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEE
Q 007761 403 GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV 482 (590)
Q Consensus 403 ~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~ 482 (590)
+++|+++|.++|||+++++++..+.++++ +|++.|....+++..++..+++|||||||.||+|||++|..+. +.|..
T Consensus 418 TKKPvIiRAseQWFi~~e~~k~~A~~al~--~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~-~~~l~ 494 (937)
T KOG0433|consen 418 TKKPVIIRASEQWFIDVEEIKKRASMALD--DVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNG-GSYLS 494 (937)
T ss_pred cCCceEEecchhheeeHHhhhhHHHHHHh--hceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCC-Cceee
Confidence 99999999999999999999999999997 6999999999999999999999999999999999999998763 44443
Q ss_pred eC-ChhHHHHHhhh-----------------hc----C-CCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCC
Q 007761 483 AR-NADEALEKAHQ-----------------KY----G-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYP 539 (590)
Q Consensus 483 ~~-~~~~~~~~~~~-----------------~~----~-~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P 539 (590)
.. +++++...... .+ + ....+.+.+|+||||||||..+-+.++. ..-.+
T Consensus 495 ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~--------~~~~~ 566 (937)
T KOG0433|consen 495 NSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDN--------EREHV 566 (937)
T ss_pred hHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecCC--------CCCcc
Confidence 32 33333222111 00 1 1235788999999999999887776653 12358
Q ss_pred ccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 540 ~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+|++++|.||+||||+++++.+.+..+++||+.|++|||++|++|.|||||
T Consensus 567 aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKS 617 (937)
T KOG0433|consen 567 ADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKS 617 (937)
T ss_pred eeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhc
Confidence 999999999999999999999999999999999999999999999999998
No 22
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=4.9e-100 Score=880.50 Aligned_cols=445 Identities=29% Similarity=0.473 Sum_probs=376.3
Q ss_pred CCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCc
Q 007761 63 FDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI 141 (590)
Q Consensus 63 ~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl 141 (590)
||+ ++|++||++|++++.|+...+.++++|+++++||||||.|||||+++++++|+++||+||+||+|++++|||+||+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl 80 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGL 80 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCCh
Confidence 787 8999999999999999987766677899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCc
Q 007761 142 ATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221 (590)
Q Consensus 142 ~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~ 221 (590)
|++.+ +.+.|.++. +|++++++.|+++|++||+++||++++.|++++|.++++++|.+|+++|+
T Consensus 81 pie~~----a~~~g~~p~------------~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGl 144 (842)
T TIGR00396 81 PAENA----AIKRGIHPA------------KWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGL 144 (842)
T ss_pred HHHHH----HHHcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 96654 455677764 68899999999999999999999999999999999999999999999999
Q ss_pred eEEcceeEEEeccCCcccCCccccccc---c-----------------------------------------------CC
Q 007761 222 IYQGSYMVNWSPNLQTAVSDLEVEYSE---E-----------------------------------------------PG 251 (590)
Q Consensus 222 iY~~~~~v~w~p~~~t~lsd~Ev~~~~---~-----------------------------------------------~~ 251 (590)
||++.++|+|||.|+|+||++||++.. . .+
T Consensus 145 iy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s 224 (842)
T TIGR00396 145 AYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKS 224 (842)
T ss_pred eEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhccccc
Confidence 999999999999999999999995311 1 12
Q ss_pred eEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccc---------------------------------cccCc
Q 007761 252 TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGM 298 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~---------------------------------~l~G~ 298 (590)
..++++|++.+.+.+|+|||||||||+|+++|+|||+++++. .+.|+
T Consensus 225 ~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (842)
T TIGR00396 225 EGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGI 304 (842)
T ss_pred ceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCC
Confidence 347788888776679999999999999999999999997542 27899
Q ss_pred EEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecC------------CCceecccCccC
Q 007761 299 MAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK------------DGTLNEVAGLFR 366 (590)
Q Consensus 299 ~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~------------~G~~~~~~~~~~ 366 (590)
+++||+ .++.+||+.++||++++|||+||+||+||++||++|+++||+++++|+. +|++++ +|.|+
T Consensus 305 ~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~ 382 (842)
T TIGR00396 305 KAIHPL-TGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFN 382 (842)
T ss_pred EEECCC-CCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-chhcC
Confidence 999999 5789999999999999999999999999999999999999999999983 778874 58999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHH
Q 007761 367 GLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIY 446 (590)
Q Consensus 367 G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~ 446 (590)
|+.+.+|++.|++.|+++|++.+. +. +
T Consensus 383 Gl~~~~A~~~Ii~~L~~~g~~~~~----------------v~----------------------------y--------- 409 (842)
T TIGR00396 383 GLNSSEAREAIIAMLEKEGKGKRK----------------VN----------------------------Y--------- 409 (842)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCce----------------EE----------------------------e---------
Confidence 999999999999999999995321 11 0
Q ss_pred HHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCCh---------------hHHHHHhhh----hc-CCCcceeec
Q 007761 447 NHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA---------------DEALEKAHQ----KY-GKNVEIYQD 506 (590)
Q Consensus 447 ~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~---------------~~~~~~~~~----~~-~~~~~~~~~ 506 (590)
+++|||||||||||+|||+|+|+++ +.+.+..+. ++++....+ .| .++..++|+
T Consensus 410 -----rlrDW~ISRQRyWG~PIPi~~~~~~-g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~re 483 (842)
T TIGR00396 410 -----RLRDWLFSRQRYWGEPIPIIHCEDG-GAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRE 483 (842)
T ss_pred -----ecccceeecccccCCceEEEEECCC-CeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeC
Confidence 4789999999999999999999652 222222110 011111111 12 134568999
Q ss_pred CceeEEeecCCchhhhhcCCCCCC-----hhhhhhcCCccEEEEeech--hhHHHHHHHHh----hccccCCCCCcEEEE
Q 007761 507 PDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDI--LFFWVARMVMM----GIEFTGSVPFSHVYL 575 (590)
Q Consensus 507 ~dvlDvWfdS~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~Di--l~~W~~~~~~~----~~~l~~~~Pf~~v~~ 575 (590)
+|||||||||| ||++++.+|++. ++.|++|||+|+|++|+|+ +|+|++|+... ...+.+++||++|++
T Consensus 484 tDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~ 562 (842)
T TIGR00396 484 TDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLIN 562 (842)
T ss_pred CCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhc
Confidence 99999999998 888888887752 4678999999999999875 56666655321 222568999999999
Q ss_pred eceEEe----CCCC
Q 007761 576 HGLIRD----SQVK 585 (590)
Q Consensus 576 hG~v~d----~~G~ 585 (590)
||||+| ++|+
T Consensus 563 ~G~Vl~~~~~~~G~ 576 (842)
T TIGR00396 563 QGMVLGFYYPPNGK 576 (842)
T ss_pred cceEEeeeecCCCC
Confidence 999999 8999
No 23
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-101 Score=814.93 Aligned_cols=530 Identities=25% Similarity=0.460 Sum_probs=483.4
Q ss_pred CCCCCCCh-HHHHHHHHHHHhcCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 58 TLPKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
+.++++++ +-|+++.++|.+.+.|.... .+++++|.+.+|||.+||.+|-||++..+++|+..||.-+.||.|.+-+
T Consensus 3 ~~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRF 82 (1070)
T KOG0434|consen 3 EVPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRF 82 (1070)
T ss_pred cccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeec
Confidence 34678897 88999999999999998764 3467889999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHcCC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHH
Q 007761 135 GTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAF 213 (590)
Q Consensus 135 G~D~~Gl~ie~~ve~~~~~~g~-~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f 213 (590)
||||||+|+|..+++.+...|. +..+.+.+++...|+..+..|..+++++..|||-++||.+.|.|++|.+.+.|+|+|
T Consensus 83 GWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434|consen 83 GWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred ccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHH
Confidence 9999999999998887633332 234568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEcceeEEEeccCCcccCCccc--cccccCCeEEEEEEEecC-CCceEEEeecCCCccCCCceEEeCCCCc
Q 007761 214 IRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAG-RSDFLTIATTRPETLFGDVALAVNPQDE 290 (590)
Q Consensus 214 ~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~~~~~~~-~~~~l~v~Tt~Petl~~~~~v~v~p~~~ 290 (590)
++|+++|++|++-+.++||..|.|+||+.|. .|++.+++++++.|++.+ ....+++|||+|||||+|.|+||||+-.
T Consensus 163 keL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~ 242 (1070)
T KOG0434|consen 163 KELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQ 242 (1070)
T ss_pred HHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeE
Confidence 9999999999999999999999999999886 699999999999999887 5678999999999999999999999843
Q ss_pred c----------------------c----------------ccccCcEEEccCCC------CCeeeEeecCccccCCCCCc
Q 007761 291 H----------------------Y----------------SQFIGMMAIVPMTY------GRHVPIISDKYVDKEFGTGV 326 (590)
Q Consensus 291 ~----------------------y----------------~~l~G~~~~~P~~~------~~~ipii~~~~V~~~~GTG~ 326 (590)
+ | +.|.|++|..+|-+ ...+.|++++||+.+.|||+
T Consensus 243 Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGi 322 (1070)
T KOG0434|consen 243 YVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGI 322 (1070)
T ss_pred EEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCcee
Confidence 1 1 35789999988843 45689999999999999999
Q ss_pred eecCCCCChhhHHHHHHhCCC-----eeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccC
Q 007761 327 LKISPGHDHNDYLLARKLGLP-----ILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ 401 (590)
Q Consensus 327 V~~~P~h~~~D~~~~~~~~l~-----~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~ 401 (590)
||++|+.|++||.+|...|+- ..|++|++|.++.+...|+|..|+||.+.|++.|++.|.++....+.|+||+||
T Consensus 323 VH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCW 402 (1070)
T KOG0434|consen 323 VHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCW 402 (1070)
T ss_pred eecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCcee
Confidence 999999999999999999863 468899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHH-HHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccE
Q 007761 402 RGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFE-KIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEY 480 (590)
Q Consensus 402 r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~-~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~ 480 (590)
||++|+++++.|.||++++++.++++++.+ +..|+|+..+ ++|.|||+|.+||.|||.|+||+|||+|+.++ .+..
T Consensus 403 RSDTPLiYraVPsWFVrVk~~v~~ll~nn~--~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD-~eev 479 (1070)
T KOG0434|consen 403 RSDTPLIYRAVPSWFVRVKNIVDQLLRNNM--KTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDD-YEEV 479 (1070)
T ss_pred cCCChHHHhhccHhhhhHHHHHHHHHhccc--ccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccC-CceE
Confidence 999999999999999999999999999754 6889999875 79999999999999999999999999999876 5678
Q ss_pred EEeCChhHHHHHhhhh-------------c---CCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEE
Q 007761 481 IVARNADEALEKAHQK-------------Y---GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLE 544 (590)
Q Consensus 481 ~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~ 544 (590)
++.+|++++.+....+ . +....+.|.++|+|+||+||.+||+..+||..+++.|+.-||+|++-
T Consensus 480 VcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadFIa 559 (1070)
T KOG0434|consen 480 VCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIA 559 (1070)
T ss_pred EEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHhhh
Confidence 8889998876543211 0 12246889999999999999999999999999999999999999999
Q ss_pred EeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 545 TGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 545 ~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+|-||.|+||+.++.++..|++++||++|+++|+|+.+||+|||||
T Consensus 560 EGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKr 605 (1070)
T KOG0434|consen 560 EGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKR 605 (1070)
T ss_pred hccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhh
Confidence 9999999999999999999999999999999999999999999996
No 24
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.2e-99 Score=879.19 Aligned_cols=446 Identities=30% Similarity=0.489 Sum_probs=377.4
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCC--CCCCCCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~k~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++.|++ ++|++||++|+++++|+... +.++++|+++++||||||. |||||+++++++|+++||+||+||+|++++|
T Consensus 77 ~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G 156 (963)
T PLN02563 77 KRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMG 156 (963)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeeccccc
Confidence 789998 99999999999999999865 4456789999999999996 9999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHH
Q 007761 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (590)
Q Consensus 136 ~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~ 215 (590)
||+||+|+|. ++.+.|.++. +|+.++++.|+++|++||+++||++++.|++++|.++++++|.+
T Consensus 157 ~D~~GlPiE~----~a~~~g~~p~------------~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~ 220 (963)
T PLN02563 157 WDAFGLPAEQ----YAIETGTHPK------------ITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQ 220 (963)
T ss_pred ccccCcHHHH----HHHHcCCChH------------HhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHH
Confidence 9999999654 4556677664 57789999999999999999999999999999999999999999
Q ss_pred HHhcCceEEcceeEEEeccCCcccCCcccccc--ccCCe-----------------------------------------
Q 007761 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS--EEPGT----------------------------------------- 252 (590)
Q Consensus 216 L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~--~~~~~----------------------------------------- 252 (590)
|+++|+||++.++|+|||.|+|+||++||+++ +..+.
T Consensus 221 L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nw 300 (963)
T PLN02563 221 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNW 300 (963)
T ss_pred HHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHh
Confidence 99999999999999999999999999999874 22222
Q ss_pred -----EEEEEEEecC-----CCceEEEeecCCCccCCCceEEeCCCCcc---------------cc--------------
Q 007761 253 -----LYYIKYRVAG-----RSDFLTIATTRPETLFGDVALAVNPQDEH---------------YS-------------- 293 (590)
Q Consensus 253 -----~~~~~~~~~~-----~~~~l~v~Tt~Petl~~~~~v~v~p~~~~---------------y~-------------- 293 (590)
.++++|++.+ .+.+|+|||||||||+|+++|+|||++++ |.
T Consensus 301 iG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~ 380 (963)
T PLN02563 301 IGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTEL 380 (963)
T ss_pred ccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhc
Confidence 3778898865 25789999999999999999999999962 21
Q ss_pred ------cccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecC-------------
Q 007761 294 ------QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK------------- 354 (590)
Q Consensus 294 ------~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~------------- 354 (590)
.+.|++++||++ ++.+||+.++||++++|||+||+||+||++||++|++||||++++|+.
T Consensus 381 ~~~k~g~~~g~~~~~P~~-~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~ 459 (963)
T PLN02563 381 QKEKTGVFTGSYAINPAT-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYT 459 (963)
T ss_pred cceecccccCcEEeccCC-CCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCcccccccccccc
Confidence 146999999995 789999999999999999999999999999999999999999999942
Q ss_pred -CCceecccCc----cCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHH
Q 007761 355 -DGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHA 429 (590)
Q Consensus 355 -~G~~~~~~~~----~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~ 429 (590)
+|++. +++. |+|+.+++|+++|+++|+++|++.+
T Consensus 460 ~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~---------------------------------------- 498 (963)
T PLN02563 460 GEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK---------------------------------------- 498 (963)
T ss_pred CceeEe-cCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC----------------------------------------
Confidence 34443 3344 9999999999999999999999621
Q ss_pred HHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhH-------------------HH
Q 007761 430 VEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE-------------------AL 490 (590)
Q Consensus 430 i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~-------------------~~ 490 (590)
.+++ +++|||||||||||+|||+|+|+.+++...++ +++ .+
T Consensus 499 ----~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~--e~~Lpv~lpe~~~~~~~~~g~~pl 558 (963)
T PLN02563 499 ----KVNY--------------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVP--ESDLPLTLPELDDFTPTGTGEPPL 558 (963)
T ss_pred ----eeEe--------------cCCCceEeeecccCCceEEEEEcCCCcEEecc--hHhCcccchhhhhcccCCCCCCch
Confidence 1222 58999999999999999999997533222222 111 11
Q ss_pred HHhhh----hc-CCCcceeecCceeEEeecCCchhhhhcCCCCCCh-----hhhhhcCCccEEEEeechh-------hHH
Q 007761 491 EKAHQ----KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA-----DDFKKFYPTTMLETGHDIL-------FFW 553 (590)
Q Consensus 491 ~~~~~----~~-~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~-----~~f~~~~P~d~~~~G~Dil-------~~W 553 (590)
....+ .| .|+..++||+|||||||+|| |||+++.+|++++ +.+++|+|+|+|++|.|+. |||
T Consensus 559 ~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Ss-wy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw 637 (963)
T PLN02563 559 AKAVSWVNTVDPSSGKPARRETNTMPQWAGSC-WYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFW 637 (963)
T ss_pred hcchhhhcCcCcCCCCCcEECCCcCCchhhcc-HHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHH
Confidence 11111 12 23456899999999999998 7788888998643 3345799999999999984 899
Q ss_pred HHHHHHhhccccCCCCCcEEEEeceEEe---------CCCC
Q 007761 554 VARMVMMGIEFTGSVPFSHVYLHGLIRD---------SQVK 585 (590)
Q Consensus 554 ~~~~~~~~~~l~~~~Pf~~v~~hG~v~d---------~~G~ 585 (590)
+.+|+.+++ +.+++||++|++||||+| ++|+
T Consensus 638 ~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~ 677 (963)
T PLN02563 638 HKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGE 677 (963)
T ss_pred HHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCc
Confidence 999999999 478999999999999998 7888
No 25
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-98 Score=873.49 Aligned_cols=473 Identities=28% Similarity=0.440 Sum_probs=395.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHH-----------cCCCccccCHHHHHHHHHHH
Q 007761 105 LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA-----------EGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 105 LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~-----------~g~~~~~~~~e~f~~~~~~~ 173 (590)
|||||+++++++|+++||+||+||+|++++|||+||+||+.++++.... .|++..++ ++| ..+++|
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f-~~~~~~ 77 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKF-KDPEYI 77 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHh-cCHHHH
Confidence 7999999999999999999999999999999999999999887764311 14433222 234 346899
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccccCCeE
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTL 253 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~ 253 (590)
++++.+.++++|++||+++||+|+|+|++|.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+|+++++..+++
T Consensus 78 ~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~ 157 (897)
T PRK12300 78 VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIV 157 (897)
T ss_pred HHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766544
Q ss_pred --EEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCc---------------------ccc-------------cccC
Q 007761 254 --YYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDE---------------------HYS-------------QFIG 297 (590)
Q Consensus 254 --~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~---------------------~y~-------------~l~G 297 (590)
++|+|+ .+.+.+|+|||||||||+||+||+|||+++ +|. +|+|
T Consensus 158 ~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G 236 (897)
T PRK12300 158 EYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIG 236 (897)
T ss_pred eEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcC
Confidence 588887 556689999999999999999999999997 243 6999
Q ss_pred cEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhC--------CCeeEee-----------------
Q 007761 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG--------LPILNVM----------------- 352 (590)
Q Consensus 298 ~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~--------l~~~~~i----------------- 352 (590)
+++.+|++ ++.+||++++||++++|||+||+||+||++||++++++| |+++.++
T Consensus 237 ~~~~~Pl~-~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~ 315 (897)
T PRK12300 237 KKVKNPVT-GKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKL 315 (897)
T ss_pred CEEECCCC-CCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHh
Confidence 99999996 689999999999999999999999999999999999998 6654444
Q ss_pred ------c---------------CCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEee
Q 007761 353 ------N---------------KDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (590)
Q Consensus 353 ------~---------------~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 411 (590)
| .+|+|++.+|.|+|+.++|||+.|++.|+++|++++.+.+.| +|+|||||+||++++
T Consensus 316 ~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~ 394 (897)
T PRK12300 316 GIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSN-RPVYCRCGTECVVKV 394 (897)
T ss_pred CCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEe
Confidence 3 489999889999999999999999999999999999888888 567779999999975
Q ss_pred -ecccccccc--hHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCe---eEEcCCccc--EEEe
Q 007761 412 -SKQWFVTME--PLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVA 483 (590)
Q Consensus 412 -~~QWFi~~~--~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi---~~~~~~~~~--~~~~ 483 (590)
++||||+++ +++++++++++ +|+|+|++.++++.+||++++||||||||+||||||+ |.+++.++. |+..
T Consensus 395 ~~~QWFi~~~~~~~k~~~~~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~ 472 (897)
T PRK12300 395 VKDQWFIDYSDPEWKELAHKALD--NMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAY 472 (897)
T ss_pred cCCceEEEcCcHHHHHHHHHHHc--cCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhH
Confidence 699999998 79999999995 6999999999999999999999999999999999997 777654443 3444
Q ss_pred CChhHHHHHhh---hhcCC---CcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHH
Q 007761 484 RNADEALEKAH---QKYGK---NVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARM 557 (590)
Q Consensus 484 ~~~~~~~~~~~---~~~~~---~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~ 557 (590)
.+..+.+.... +.+.. +..+....+.+++|++|| +|...+. ..+++|++|||+|++++|+||+++|..++
T Consensus 473 ~~i~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg-~p~~~~~---~~~~~f~~~~P~D~~~~GkDii~~Hl~~~ 548 (897)
T PRK12300 473 YTIAHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTG-IPKEILE---EMREEFLYWYPVDWRHSGKDLIPNHLTFF 548 (897)
T ss_pred HHHHHHHHHcCCChHHCChhhCceEEeCCCccccCchhcC-CCHHHHH---HHHHHHhccCCceEEEeeeccCccHHHHH
Confidence 44333332210 00100 011112234555566666 3333322 12467999999999999999999876666
Q ss_pred HHhhccccCCCCC-cEEEEeceEEeCCCCccccC
Q 007761 558 VMMGIEFTGSVPF-SHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 558 ~~~~~~l~~~~Pf-~~v~~hG~v~d~~G~KMSKS 590 (590)
++++..+.++.|| ++|++||||++ +|+|||||
T Consensus 549 ~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS 581 (897)
T PRK12300 549 IFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKS 581 (897)
T ss_pred HHHHHHhcCCCccCcEEEEcceEEE-CCccccCc
Confidence 7777777777777 99999999998 89999999
No 26
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=9e-98 Score=860.07 Aligned_cols=443 Identities=29% Similarity=0.505 Sum_probs=374.6
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~ 138 (590)
.+.|++ ++|++||++|++++.|+...+. +++|+++++||||||.|||||+++++++|+++||+||+|++|++++|||+
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~~~-~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~ 80 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTEDS-SKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 80 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCccC-CCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCC
Confidence 467998 9999999999999999987553 34788889999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHh
Q 007761 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (590)
Q Consensus 139 ~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (590)
||+|+|.+ +.+.|.++. +|++++++.|+++|++||+++||++++.|++++|.+.++++|.+|++
T Consensus 81 ~Glpie~~----a~~~g~~~~------------~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 144 (805)
T PRK00390 81 FGLPAENA----AIKTGTHPA------------EWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYE 144 (805)
T ss_pred CCCHHHHH----HHHcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHH
Confidence 99997654 445576653 78899999999999999999999999999999999999999999999
Q ss_pred cCceEEcceeEEEeccCCcccCCccccccc--c-----------------------------------------------
Q 007761 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E----------------------------------------------- 249 (590)
Q Consensus 219 kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~--~----------------------------------------------- 249 (590)
+|+||++.++|+|||.|+|+||++||+... .
T Consensus 145 ~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig 224 (805)
T PRK00390 145 KGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIG 224 (805)
T ss_pred CCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhcc
Confidence 999999999999999999999999997431 1
Q ss_pred CCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCccccc---------------------------------cc
Q 007761 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ---------------------------------FI 296 (590)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~---------------------------------l~ 296 (590)
.+..++++|++.+.+.+|+|||||||||+||+||+|||+++++.. |+
T Consensus 225 ~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 304 (805)
T PRK00390 225 RSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFT 304 (805)
T ss_pred ccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeec
Confidence 124678999988767899999999999999999999999987633 58
Q ss_pred CcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecC--------------CCceeccc
Q 007761 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK--------------DGTLNEVA 362 (590)
Q Consensus 297 G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~--------------~G~~~~~~ 362 (590)
|++|.||++ ++++||+.++||++++|||+||+||+||++||++|++|||+++++||. +|++++ .
T Consensus 305 g~~~~~P~~-~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~-~ 382 (805)
T PRK00390 305 GLYAIHPLT-GEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLIN-S 382 (805)
T ss_pred CcEEECCCC-CCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEe-c
Confidence 999999995 789999999999999999999999999999999999999999999975 455543 3
Q ss_pred CccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchH
Q 007761 363 GLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF 442 (590)
Q Consensus 363 ~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~ 442 (590)
|.|+|+.+++||++|++.|+++|++. . .+.+
T Consensus 383 ~~~~Gl~~~~a~~~Ii~~L~~~g~~~----------------~----------------------------~v~~----- 413 (805)
T PRK00390 383 GELDGLDSEEAKEAIIAWLEEKGLGK----------------R----------------------------KVNY----- 413 (805)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCCC----------------C----------------------------ceEE-----
Confidence 88999999999999999999999842 1 1221
Q ss_pred HHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHH----------------HHHhhh----hc-CCCc
Q 007761 443 EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----------------LEKAHQ----KY-GKNV 501 (590)
Q Consensus 443 ~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~----------------~~~~~~----~~-~~~~ 501 (590)
+++|||||||||||+|||+|+|+.+ +...+ ..+++ +..... .+ .++.
T Consensus 414 ---------~l~DW~ISRQR~WG~PIPi~~~~~~-g~~~v--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 481 (805)
T PRK00390 414 ---------RLRDWGISRQRYWGEPIPIIHCEDC-GIVPV--PEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGK 481 (805)
T ss_pred ---------ECCCccccccccCCCceeEEEECCC-CceeC--chHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCC
Confidence 4689999999999999999999653 22222 11111 111111 12 2245
Q ss_pred ceeecCceeEEeecCCchhhhhcCCCCC-----ChhhhhhcCCccEEEEeech--hhHHHHHH-----HHhhccccCCCC
Q 007761 502 EIYQDPDVLDTWFSSALWPFSTLGWPDV-----SADDFKKFYPTTMLETGHDI--LFFWVARM-----VMMGIEFTGSVP 569 (590)
Q Consensus 502 ~~~~~~dvlDvWfdS~~~~~~~~~~~~~-----~~~~f~~~~P~d~~~~G~Di--l~~W~~~~-----~~~~~~l~~~~P 569 (590)
.++|++|||||||||| ||++.+.+|++ ++++|++|||+|+|++|+|+ +|+|++++ ..+++ ..+++|
T Consensus 482 ~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~-~~~~~P 559 (805)
T PRK00390 482 PARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGL-VSSDEP 559 (805)
T ss_pred CceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhc-ccCCcc
Confidence 6999999999999998 99999999864 25789999999999999995 45454444 33443 468999
Q ss_pred CcEEEEeceEEeCCCCccccC
Q 007761 570 FSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 570 f~~v~~hG~v~d~~G~KMSKS 590 (590)
|++|++|||| |||||
T Consensus 560 fk~v~~~G~v------KMSKS 574 (805)
T PRK00390 560 FKKLLTQGMV------KMSKS 574 (805)
T ss_pred hhhheecCcE------EeCCC
Confidence 9999999999 99999
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-80 Score=697.09 Aligned_cols=450 Identities=29% Similarity=0.473 Sum_probs=369.2
Q ss_pred CCCCh-HHHHHHHHHHHhcCCCCCCCCCCC-CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCC
Q 007761 61 KTFDF-TSEERIYNWWESQGYFKPNFERGS-DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDH 138 (590)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~-k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~ 138 (590)
..|++ +||++||++|++++.|+...+.++ ++|+++.+.|||||.|||||+|||+++|+++||+||+||+|++++|||.
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwda 82 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 82 (814)
T ss_pred cccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccc
Confidence 46777 899999999999999999877665 5999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHh
Q 007761 139 AGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE 218 (590)
Q Consensus 139 ~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 218 (590)
+|+| ++.+|.+.|.+|. .|+.+++..+++||++||.++||+|++.|+||+|++++||+|.+|++
T Consensus 83 fGlP----ae~~A~~~~~~P~------------~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~e 146 (814)
T COG0495 83 FGLP----AENAAIKIGTDPA------------KWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYE 146 (814)
T ss_pred cCch----HHHHHHHhCCChH------------HHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHH
Confidence 9999 6777778888886 78999999999999999999999999999999999999999999999
Q ss_pred cCceEEcceeEEEeccCCcccCCcccccc------cc----CCeEEE---------------------------------
Q 007761 219 KGLIYQGSYMVNWSPNLQTAVSDLEVEYS------EE----PGTLYY--------------------------------- 255 (590)
Q Consensus 219 kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~------~~----~~~~~~--------------------------------- 255 (590)
+||||+++.+|+|||.|+|+|+|+||... +. .-++++
T Consensus 147 kGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWI 226 (814)
T COG0495 147 KGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWI 226 (814)
T ss_pred CCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCc
Confidence 99999999999999999999999999755 21 112223
Q ss_pred -------EEEEecCC--CceEEEeecCCCccCCCceEEeCCCCcccc---------------------------------
Q 007761 256 -------IKYRVAGR--SDFLTIATTRPETLFGDVALAVNPQDEHYS--------------------------------- 293 (590)
Q Consensus 256 -------~~~~~~~~--~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~--------------------------------- 293 (590)
+.|.+.+. ...+.|+||||.|++|.+.+++.|+++...
T Consensus 227 g~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k 306 (814)
T COG0495 227 GPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEK 306 (814)
T ss_pred CCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCC
Confidence 33333222 356899999999999999999999986320
Q ss_pred --cccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCC-----------Cceec
Q 007761 294 --QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD-----------GTLNE 360 (590)
Q Consensus 294 --~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~-----------G~~~~ 360 (590)
-..|.+++||++ ++.|||+.++||.+.+|||+||.+|+|+..|+++|.+|++|+..+|... |. .-
T Consensus 307 ~gv~~g~~a~~p~~-~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~-li 384 (814)
T COG0495 307 DGVFLGGYAINPVN-GEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGV-LI 384 (814)
T ss_pred cceeccccccCCCC-CCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCce-Ee
Confidence 134778899996 5999999999999999999999999999999999999999999888643 34 34
Q ss_pred ccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecc
Q 007761 361 VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPE 440 (590)
Q Consensus 361 ~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~ 440 (590)
+++.++|++..+|...+...| +.+...|||++++
T Consensus 385 nS~~~~gl~~e~a~~~~~~~l--------------------------~~~~~~q~~v~Y~-------------------- 418 (814)
T COG0495 385 NSGGLDGLDYEEAKVKIRCGL--------------------------VKRGLGQWFVNYR-------------------- 418 (814)
T ss_pred ccccccCcchhHHHHHHHHhH--------------------------HHhcCCceEEecc--------------------
Confidence 667899998886655555444 3345578888865
Q ss_pred hHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHH----------------HHHhhhhc---CCCc
Q 007761 441 RFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----------------LEKAHQKY---GKNV 501 (590)
Q Consensus 441 ~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~---~~~~ 501 (590)
++||++||||+||.|||+.+|+.+. .+...++++ +....+.. ..+.
T Consensus 419 ------------lrdW~~srqRywg~pipii~~e~~~---~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s 483 (814)
T COG0495 419 ------------LRDWLKSRQRYWGEPIPIIHCEDCG---VVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDS 483 (814)
T ss_pred ------------cchHHHHHHHHhCCCcceeEcccCC---cccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCC
Confidence 5799999999999999999996531 111112211 11111111 1246
Q ss_pred ceeecCceeEEeecCCchhhhhcCCCCCC------hhhhhhcCCccEEEEe--echhhHHHHHHHHhhcc----ccCCCC
Q 007761 502 EIYQDPDVLDTWFSSALWPFSTLGWPDVS------ADDFKKFYPTTMLETG--HDILFFWVARMVMMGIE----FTGSVP 569 (590)
Q Consensus 502 ~~~~~~dvlDvWfdS~~~~~~~~~~~~~~------~~~f~~~~P~d~~~~G--~Dil~~W~~~~~~~~~~----l~~~~P 569 (590)
+.+|++||||+|++|+ ||+..+-.|... ++.|++|||+|+|++| |.++|..|+++....+. ...++|
T Consensus 484 ~~~ret~Tm~~~~~ss-wy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~ep 562 (814)
T COG0495 484 TAYRETDTMDTFIDSS-WYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEP 562 (814)
T ss_pred ceeeehhhhhHhcccc-cccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccc
Confidence 8899999999999999 666555444332 5789999999999999 55668888888776654 346789
Q ss_pred CcEEEEeceEEeCCCCccccC
Q 007761 570 FSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 570 f~~v~~hG~v~d~~G~KMSKS 590 (590)
|++|+++|||+-.+|+|||||
T Consensus 563 f~~L~~qGmVl~~~g~KMSKS 583 (814)
T COG0495 563 FKKLITQGMVLGEEGEKMSKS 583 (814)
T ss_pred hhhhhccceEEecCCCccccc
Confidence 999999999996689999999
No 28
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=7.2e-78 Score=643.35 Aligned_cols=344 Identities=62% Similarity=1.130 Sum_probs=312.9
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~ 169 (590)
++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|+|+||+|||..+++.+...+.+..+++.++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999988877666656667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCcccccccc
Q 007761 170 VWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (590)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (590)
|++|++++.+.+++++++||+++||++.+.|+++.|.+.|+++|.+|+++|+||++.++++|||.|+|+|++.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997642
Q ss_pred CCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceec
Q 007761 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (590)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~ 329 (590)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEE
Q 007761 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (590)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~ 409 (590)
|+|||+++++
T Consensus 156 ----------------------------------------------------------------------c~~cg~~~~~ 165 (382)
T cd00817 156 ----------------------------------------------------------------------CSRSGDVIEP 165 (382)
T ss_pred ----------------------------------------------------------------------cccCCCeEEE
Confidence 7899999999
Q ss_pred eeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHH
Q 007761 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (590)
Q Consensus 410 ~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~ 489 (590)
+.++||||+++++++++++.++++.++|+|++.++++.+||++++|||||||+.||+|||+|+|++ ++.+++....+++
T Consensus 166 ~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~-~~~~~~~~~~~~~ 244 (382)
T cd00817 166 LLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKD-GGHWVVAREEDEA 244 (382)
T ss_pred EecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCC-CCcEEecchhHHH
Confidence 999999999999999999999877799999999999999999999999999999999999999965 3445555554444
Q ss_pred HHHhhh--hcC-CCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccC
Q 007761 490 LEKAHQ--KYG-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTG 566 (590)
Q Consensus 490 ~~~~~~--~~~-~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~ 566 (590)
...+.. .+. ....++++++||||||||+++|++.++||.+. ++|+++||+|++++|+||++||+.++++++..+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~-~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g 323 (382)
T cd00817 245 IDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEET-KDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTG 323 (382)
T ss_pred HHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcc-hhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhC
Confidence 433321 121 23468999999999999999999999998775 67999999999999999999999999999988888
Q ss_pred CCCCcEEEEeceEEeCCCCccccC
Q 007761 567 SVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 567 ~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
..||+.+++||+|+|.+|+|||||
T Consensus 324 ~~p~~~v~~hg~v~~~~g~KMSKS 347 (382)
T cd00817 324 KLPFKEVYLHGLVRDEDGRKMSKS 347 (382)
T ss_pred CCchHHeEeeeeEECCCCCCcccc
Confidence 889999999999999999999998
No 29
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-77 Score=637.08 Aligned_cols=436 Identities=28% Similarity=0.454 Sum_probs=357.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHH
Q 007761 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (590)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~ 145 (590)
.||..|+++|+++..|....+.++++|++.+. |||+|.|||||.|.|++.|+++||.||+||+|+.++|||.+|+|
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~d~sk~KYiLsMF-PYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLP--- 109 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDSDKSKKKYILSMF-PYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLP--- 109 (876)
T ss_pred HHHHHHHHHHhcCCccccccccCCCceEEEec-CCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCc---
Confidence 78999999999999998766677778988888 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEc
Q 007761 146 VVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (590)
Q Consensus 146 ~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~ 225 (590)
+|++|.+.|++|. .|+..+++.|++||++||++|||+||..|++|+|+++.|++|.+|+++||+|+.
T Consensus 110 -AENAAiergv~P~------------sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 110 -AENAAIERGVHPA------------SWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred -hhhHHHhcCCCch------------hhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhcc
Confidence 8899999999997 788999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeccCCcccCCccccccc-------------------------------------------------cCCeEEEE
Q 007761 226 SYMVNWSPNLQTAVSDLEVEYSE-------------------------------------------------EPGTLYYI 256 (590)
Q Consensus 226 ~~~v~w~p~~~t~lsd~Ev~~~~-------------------------------------------------~~~~~~~~ 256 (590)
+..|+|||.++|+|++++|+... ..+.-..+
T Consensus 177 Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el 256 (876)
T KOG0435|consen 177 EAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAEL 256 (876)
T ss_pred ccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEE
Confidence 99999999999999999995321 11223456
Q ss_pred EEEecC---CCceEEEeecCCCccCCCceEEeCCCCccc------c------cc------cCcEEEccCCCCCeeeEeec
Q 007761 257 KYRVAG---RSDFLTIATTRPETLFGDVALAVNPQDEHY------S------QF------IGMMAIVPMTYGRHVPIISD 315 (590)
Q Consensus 257 ~~~~~~---~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y------~------~l------~G~~~~~P~~~~~~ipii~~ 315 (590)
-|++.+ .++.|.|+||+||||+|.+.+++.|+|... + .| .+..+.||++ |+++||+.+
T Consensus 257 ~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~t-g~~iPv~~a 335 (876)
T KOG0435|consen 257 MFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVT-GRAIPVVVA 335 (876)
T ss_pred EEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCC-CceeeEEEe
Confidence 677655 348999999999999999999999998632 1 12 3457899994 899999999
Q ss_pred CccccCCCCCceecCCCCChhhHHHHHHhCCCeeEee----cCCCceecccCccCC-CCHHHHHHHHHHHHHHcCCccee
Q 007761 316 KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVM----NKDGTLNEVAGLFRG-LDRFEARKKLWSDLEETGLAVKK 390 (590)
Q Consensus 316 ~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i----~~~G~~~~~~~~~~G-~~~~~a~~~i~~~L~~~g~~~~~ 390 (590)
+||...+|||+|+.+|+|+.+|++++++.|+..+.++ +.+|..+ ....++| +.+++|..+|.+.+++.|+.-..
T Consensus 336 ~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~-~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~ 414 (876)
T KOG0435|consen 336 DYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKN-EQKAFTNLDIRQNAALKLFQFAERKGVGGYV 414 (876)
T ss_pred chhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhh-ccccccchhHHHHHHHHHHHHHHhcCCCcce
Confidence 9999999999999999999999999999776654443 4555554 3345678 55667899999999888874221
Q ss_pred eeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCe
Q 007761 391 EPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV 470 (590)
Q Consensus 391 ~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi 470 (590)
-. ..++||.||||||||+|||+
T Consensus 415 vs----------------------------------------------------------~kLkDWLiSRQRyWGTPIPi 436 (876)
T KOG0435|consen 415 VS----------------------------------------------------------YKLKDWLISRQRYWGTPIPI 436 (876)
T ss_pred ec----------------------------------------------------------chhhhhhhhhhhccCCCcce
Confidence 10 16789999999999999999
Q ss_pred eEEcCCcccEEEeCChhH----------------HHHHhhhh----c-CCCcceeecCceeEEeecCCchhhhhcCCCCC
Q 007761 471 WYIVGKEEEYIVARNADE----------------ALEKAHQK----Y-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV 529 (590)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~----~-~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~ 529 (590)
.+|+.+ + .++..+++ ++.++... | .++...+||+|+||||+||+ |||.++-.|++
T Consensus 437 vhc~~c-G--~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSs-WYYlRylDpkN 512 (876)
T KOG0435|consen 437 VHCDDC-G--AVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSS-WYYLRYLDPKN 512 (876)
T ss_pred EEcCCC-C--cccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccc-eeeEeecCCCC
Confidence 999653 2 22222222 23333332 1 23457899999999999999 55666666777
Q ss_pred Chhh-----hhhcCCccEEEEe--echhhHHHHHHHHhhc---c-ccCCCCCcEEEEeceEEeC
Q 007761 530 SADD-----FKKFYPTTMLETG--HDILFFWVARMVMMGI---E-FTGSVPFSHVYLHGLIRDS 582 (590)
Q Consensus 530 ~~~~-----f~~~~P~d~~~~G--~Dil~~W~~~~~~~~~---~-l~~~~Pf~~v~~hG~v~d~ 582 (590)
.... -.+|.|+|+|++| |.++|..++|+++--+ . ....+||+.|+.+|+|+.+
T Consensus 513 ~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~ 576 (876)
T KOG0435|consen 513 PEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGK 576 (876)
T ss_pred cccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccce
Confidence 5333 4579999999999 8999999999876433 2 3468999999999999753
No 30
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.4e-67 Score=555.43 Aligned_cols=302 Identities=34% Similarity=0.655 Sum_probs=274.8
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcC-CCccccCHHHHHH
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG-IKRVELSRDEFTK 168 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g-~~~~~~~~e~f~~ 168 (590)
++|+|.+|||||||++||||+++++++|+++||+|++|++|.+++|+|+||+|||.++++.+...+ ..+.+.+++++.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999888776542222 2346788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccc
Q 007761 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (590)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (590)
.|+++++++.+.++++|++||++.||++.+.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999988865
Q ss_pred cCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCcee
Q 007761 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~ 328 (590)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeE
Q 007761 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (590)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (590)
+++
T Consensus 144 -----------------------------------------------------------------------------~v~ 146 (338)
T cd00818 144 -----------------------------------------------------------------------------PLI 146 (338)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 345
Q ss_pred EeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhH
Q 007761 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (590)
Q Consensus 409 ~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~ 488 (590)
++.++||||+++++++.+++.+++ ++|+|++.++.+.+||++++|||||||+.||+|||+|+++++ +..++
T Consensus 147 ~~~~~qwf~~l~~~~~~l~~~~~~--~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~-~~~~~------ 217 (338)
T cd00818 147 YRATPQWFIRVTKIKDRLLEANDK--VNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDC-GEVLV------ 217 (338)
T ss_pred EEecCeEEEEcHHHHHHHHHHHhc--CcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecCC-CeEEE------
Confidence 678899999999999999999974 788999999999999999999999999999999999998652 22221
Q ss_pred HHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCC
Q 007761 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (590)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~ 568 (590)
.++++|+||||||+++|++..+|+.+. ++|+++||+|++++|+||+++|+.++++.++.+.+..
T Consensus 218 ---------------~~~~~v~~vWfda~~~~~~~~~~~~~~-~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~~ 281 (338)
T cd00818 218 ---------------RRVPDVLDVWFDSGSMPYAQLHYPFEN-EDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKA 281 (338)
T ss_pred ---------------ecCCceEEEEEeCCCCHHHHcCCCCcc-hhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCCC
Confidence 467999999999999999999998765 6799999999999999999999999999998888899
Q ss_pred CCcEEEEeceEEeCCCCccccC
Q 007761 569 PFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 569 Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
||+++++||++++.+|+|||||
T Consensus 282 p~~~~~~hg~~~~~~g~KmSKS 303 (338)
T cd00818 282 PYKNVIVHGFVLDEDGRKMSKS 303 (338)
T ss_pred ccceEEEEeeEECCCCCCCCCC
Confidence 9999999999999999999999
No 31
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-66 Score=550.84 Aligned_cols=520 Identities=23% Similarity=0.369 Sum_probs=415.0
Q ss_pred CCCC-h-HHHHHHHHHHHhcCCCCCCCC----CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 61 KTFD-F-TSEERIYNWWESQGYFKPNFE----RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 61 ~~~~-~-~~E~~~~~~W~~~~~f~~~~~----~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
++++ + +||+++|++|++++.|+.+.. +.+++|++++|.||+||.||+||+++..-.|+.+-|+|++|++|+|++
T Consensus 9 ar~d~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPf 88 (1080)
T KOG0437|consen 9 ARRDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPF 88 (1080)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeec
Confidence 4555 3 999999999999999998752 347789999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHc---CCCcc------------------------------------------------ccCH
Q 007761 135 GTDHAGIATQLVVEKMLAAE---GIKRV------------------------------------------------ELSR 163 (590)
Q Consensus 135 G~D~~Gl~ie~~ve~~~~~~---g~~~~------------------------------------------------~~~~ 163 (590)
|++|.|+||..-++++.++. |.++. -+++
T Consensus 89 gFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~d 168 (1080)
T KOG0437|consen 89 GFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPD 168 (1080)
T ss_pred ccccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCH
Confidence 99999999887666544321 22110 1122
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCC--hhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCccc
Q 007761 164 DEFTK--RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAV 239 (590)
Q Consensus 164 e~f~~--~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~l 239 (590)
++..+ ....|..++.....++|+++|..+||+|++.|+| |.|..+|.|+|++|.+.|.|..+.+...|||++++++
T Consensus 169 eEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpC 248 (1080)
T KOG0437|consen 169 EEIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPC 248 (1080)
T ss_pred HHhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcc
Confidence 32221 2457899999999999999999999999999986 6688999999999999999999999999999999999
Q ss_pred CCccccccccCCeEEEEEEEec--C-----------CCceEEEeecCCCccCCCceEEeCCCCcc---------------
Q 007761 240 SDLEVEYSEEPGTLYYIKYRVA--G-----------RSDFLTIATTRPETLFGDVALAVNPQDEH--------------- 291 (590)
Q Consensus 240 sd~Ev~~~~~~~~~~~~~~~~~--~-----------~~~~l~v~Tt~Petl~~~~~v~v~p~~~~--------------- 291 (590)
.|++...+|.+++.-|.-.+++ . .+.+++++|.||||++|.|+++|+|+-.+
T Consensus 249 mDHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t 328 (1080)
T KOG0437|consen 249 MDHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIAT 328 (1080)
T ss_pred cccccccCCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEee
Confidence 9999999999998777655543 1 34788999999999999999999998542
Q ss_pred --------c------------------ccccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHH--
Q 007761 292 --------Y------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK-- 343 (590)
Q Consensus 292 --------y------------------~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~-- 343 (590)
| .+++|..+..|++-.+.|.++++.-|..++|||+|.++|+.+++||...+.
T Consensus 329 ~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~ 408 (1080)
T KOG0437|consen 329 ERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLK 408 (1080)
T ss_pred hHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhh
Confidence 1 246788899999888999999999999999999999999999999998744
Q ss_pred -----hC----------CCeeEeec------------------------------------CCCceecccCccCCCCHHH
Q 007761 344 -----LG----------LPILNVMN------------------------------------KDGTLNEVAGLFRGLDRFE 372 (590)
Q Consensus 344 -----~~----------l~~~~~i~------------------------------------~~G~~~~~~~~~~G~~~~~ 372 (590)
|| +|||.+-. -+|+| -.|.|.|.++.+
T Consensus 409 kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~m--lig~y~G~KVe~ 486 (1080)
T KOG0437|consen 409 KKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTM--LIGKYKGEKVED 486 (1080)
T ss_pred hcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceE--EEeccccccHHh
Confidence 33 24443311 02333 258899999999
Q ss_pred HHHHHHHHHHHcCCcce-eeeccccCcccCCCCceeEEeeecccccccch--HHHHHHHHHHcCCceEecchHHHHHHHH
Q 007761 373 ARKKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHW 449 (590)
Q Consensus 373 a~~~i~~~L~~~g~~~~-~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~--~~~~~~~~i~~~~i~~~P~~~~~~~~~~ 449 (590)
+++.|...|++.|.++. .||. -++-+|||..|+..+++||||++.+ +++.+.+++++ ++.+-+..|+.++..
T Consensus 487 ~K~~i~~~li~~g~a~~y~EPE---kqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~--l~~f~dEtR~~fE~t 561 (1080)
T KOG0437|consen 487 AKPKIKTDLIETGDALKYNEPE---KQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLEN--LNTFSDETRNGFEDT 561 (1080)
T ss_pred hhhHHHHHHHhcccceeecCcc---hhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhh--hhccCHHHHHHHHHH
Confidence 99999999999999887 4443 3467899999999999999999985 88999999974 777888899999999
Q ss_pred HhcCCCeeeeeecCcccccCe---eEEcCCccc--EEEeCChhHHHHHhhhhcC---CCcceeec-CceeEEeecCCchh
Q 007761 450 LSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYG---KNVEIYQD-PDVLDTWFSSALWP 520 (590)
Q Consensus 450 l~~l~DW~ISRqr~WG~pIPi---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~dvlDvWfdS~~~~ 520 (590)
|++++.|.+||..+.||+||| |.+++.+|+ |++..+.++++.....+-. -+..-.|- ++|+|.-|-....+
T Consensus 562 LdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~ 641 (1080)
T KOG0437|consen 562 LDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYP 641 (1080)
T ss_pred HHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCC
Confidence 999999999999999999998 777776665 7777888888877332110 11222232 34666555544322
Q ss_pred hhhcCCCCC----ChhhhhhcCCccEEEEeechhhHHHHHHHH--hhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 521 FSTLGWPDV----SADDFKKFYPTTMLETGHDILFFWVARMVM--MGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 521 ~~~~~~~~~----~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~--~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
- ....|.. .+++|++|||.|++++|+|++-.+...++. .++.-..++| +.|.++||++ .+++|||||
T Consensus 642 k-~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHLm-LNsEKMSKS 714 (1080)
T KOG0437|consen 642 K-NTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHLM-LNSEKMSKS 714 (1080)
T ss_pred c-CCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceEE-ecchhhccc
Confidence 1 1111111 157899999999999999999654444433 3343468999 9999999999 899999998
No 32
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=2.6e-61 Score=537.80 Aligned_cols=318 Identities=28% Similarity=0.459 Sum_probs=276.5
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 007761 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (590)
Q Consensus 92 f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~ 171 (590)
|+|++|||||||.|||||+++++.+|+++||+|++|++|.+++|+|+||.+|+. .++++|.++.
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~----~a~~~g~~~~------------ 64 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIEL----KAEQEGLTPK------------ 64 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHH----HHHHcCCCHH------------
Confidence 589999999999999999999999999999999999999999999999999644 4556787765
Q ss_pred HHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccccC
Q 007761 172 EWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (590)
Q Consensus 172 ~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (590)
++++.+.+.+++++++|||++| |.+ |+++.|.+.++++|.+|.++|+||++++.++|||.|+|+|+|.+|+
T Consensus 65 e~~~~~~~~~~~~l~~LgI~~D~~~~---t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~----- 136 (530)
T TIGR00398 65 ELVDKYHEEFKDDWKWLNISFDRFIR---TTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVE----- 136 (530)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcc---CCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhc-----
Confidence 5678899999999999999999 433 8899999999999999999999999999999999999999998653
Q ss_pred CeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceecC
Q 007761 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (590)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~ 330 (590)
| .|
T Consensus 137 ------------------------------------------------------------------------g-----~c 139 (530)
T TIGR00398 137 ------------------------------------------------------------------------G-----TC 139 (530)
T ss_pred ------------------------------------------------------------------------C-----CC
Confidence 2 26
Q ss_pred CCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEe
Q 007761 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (590)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (590)
|.|+.. |.+|.+|++||.. .++.++.+|+|+|||++++++
T Consensus 140 p~c~~~----------------~~~g~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e~~ 179 (530)
T TIGR00398 140 PKCGSE----------------DARGDHCEVCGRH------------------------LEPTELINPRCKICGAKPELR 179 (530)
T ss_pred CCCCCc----------------ccccchhhhcccc------------------------CCHHHhcCCccccCCCcceEE
Confidence 777665 3578888888753 377788999999999999999
Q ss_pred eecccccccchHHHHHHHHHHcCC-ceEecchHHHHHHHHHhc-CCCeeeeeecC-cccccCeeEEcCCcccEEEeCChh
Q 007761 411 VSKQWFVTMEPLAEKALHAVEKGE-LTIMPERFEKIYNHWLSN-IKDWCISRQLW-WGHRIPVWYIVGKEEEYIVARNAD 487 (590)
Q Consensus 411 ~~~QWFi~~~~~~~~~~~~i~~~~-i~~~P~~~~~~~~~~l~~-l~DW~ISRqr~-WG~pIPi~~~~~~~~~~~~~~~~~ 487 (590)
.++||||+++++++++++++++++ ..+.|++.++.+.+||++ ++|||||||+. ||+|||.|
T Consensus 180 ~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~---------------- 243 (530)
T TIGR00398 180 DSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND---------------- 243 (530)
T ss_pred ecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC----------------
Confidence 999999999999999999997542 556788899999999997 99999999999 99999964
Q ss_pred HHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCcc-----EEEEeechhhH----HHHHHH
Q 007761 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTT-----MLETGHDILFF----WVARMV 558 (590)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d-----~~~~G~Dil~~----W~~~~~ 558 (590)
+.+|+||||||+++|++.++++....++|+++||+| ++++|+||++| |+++++
T Consensus 244 ------------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~ 305 (530)
T TIGR00398 244 ------------------PNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLM 305 (530)
T ss_pred ------------------CCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHH
Confidence 157999999999999998887765446799999999 99999999986 444444
Q ss_pred HhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 559 MMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 559 ~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+++ ..|++++++||||++. |+|||||
T Consensus 306 ~~~-----~~~~~~~~~~g~v~~~-g~KmSKS 331 (530)
T TIGR00398 306 GLG-----LPLPTQVFSHGYLTVE-GGKMSKS 331 (530)
T ss_pred hCC-----CCCCCEEEeeccEEEC-Cceeccc
Confidence 333 2467999999999975 9999998
No 33
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-60 Score=535.36 Aligned_cols=325 Identities=25% Similarity=0.416 Sum_probs=270.4
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHH-HHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFV-TLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~-vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~ 168 (590)
++|+|++|||||||.|||||++++ +++|+++||+||+|++|.+++|+|+||++|+.+ +++.|.++.
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~----a~~~g~~~~--------- 69 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELA----AKKEGVTPQ--------- 69 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHH----HHHcCCCHH---------
Confidence 579999999999999999999998 999999999999999999999999999996554 455688765
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccc
Q 007761 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (590)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (590)
++++++.+.|++++++|||++|+ .+.|++++|.+.++++|.+|+++|+||+++++++|||.|+|+|++.+|.
T Consensus 70 ---~~~~~~~~~~~~~~~~l~i~~d~--~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~--- 141 (556)
T PRK12268 70 ---ELADKYHEEHKEDFKKLGISYDL--FTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE--- 141 (556)
T ss_pred ---HHHHHHHHHHHHHHHHcCCcCCC--CcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee---
Confidence 57789999999999999998883 3448999999999999999999999999999999999999999987552
Q ss_pred cCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCcee
Q 007761 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~ 328 (590)
|+
T Consensus 142 --------------------------------------------------------------------------g~---- 143 (556)
T PRK12268 142 --------------------------------------------------------------------------GT---- 143 (556)
T ss_pred --------------------------------------------------------------------------cc----
Confidence 21
Q ss_pred cCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeE
Q 007761 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (590)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (590)
||.|+.. +.+|.+|+.||.. .++.++..|+|+|||++++
T Consensus 144 -cp~c~~~----------------~~~G~~ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e 182 (556)
T PRK12268 144 -CPYCGYE----------------GARGDQCDNCGAL------------------------LDPTDLINPRSKISGSTPE 182 (556)
T ss_pred -CCCCCCc----------------ccCCchhhhcccc------------------------CChHHhcCCccccCCCcCe
Confidence 5555432 3588888888763 1334556799999999999
Q ss_pred EeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeeeecCcccccCeeEEcCCcccEEEeCChh
Q 007761 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (590)
Q Consensus 409 ~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~ 487 (590)
++.++||||++++++++++++++ ++.++|+..++++.+||+ +++||||||||+||+||| |.+.
T Consensus 183 ~~~~~qwF~~l~~~~~~l~~~~~--~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~------------- 246 (556)
T PRK12268 183 FRETEHFFLDLPAFAERLRAWIE--SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGF------------- 246 (556)
T ss_pred EEecceEEEEhHHHHHHHHHHHh--hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCC-------------
Confidence 99999999999999999999997 478999999999999999 899999999999999999 5432
Q ss_pred HHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcC-CCCC--ChhhhhhcC----CccEEEEeechhhHHHHHH--H
Q 007761 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLG-WPDV--SADDFKKFY----PTTMLETGHDILFFWVARM--V 558 (590)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~-~~~~--~~~~f~~~~----P~d~~~~G~Dil~~W~~~~--~ 558 (590)
+..++|||||+.+.|++..+ +... +..+|..|| |.+++++|+||++|+...+ +
T Consensus 247 ------------------~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~ 308 (556)
T PRK12268 247 ------------------EGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAM 308 (556)
T ss_pred ------------------CCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHH
Confidence 25799999999877765533 2221 124687778 7789999999988754332 2
Q ss_pred HhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 559 MMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 559 ~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+++.....+.| +.+++||||++ +|+|||||
T Consensus 309 l~~~~~~~~~P-~~v~~~G~v~~-~G~KMSKS 338 (556)
T PRK12268 309 LLGSGEPLKLP-DEIVSSEYLTL-EGGKFSKS 338 (556)
T ss_pred HHhcCCCCCCC-CEeeccCCEEE-CCeeeccC
Confidence 22332235678 79999999985 89999998
No 34
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-59 Score=511.80 Aligned_cols=321 Identities=28% Similarity=0.450 Sum_probs=291.6
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 007761 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~ 168 (590)
.++|+||+++|||||+|||||+++++.+|+++||+|++|++|+|++|+|+||.+| +..|.++|++|+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I----~~~A~~~g~tP~--------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKI----ELKAEKEGITPQ--------- 70 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHH----HHHHHHcCCCHH---------
Confidence 5789999999999999999999999999999999999999999999999999995 555778899998
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCcccccc
Q 007761 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (590)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (590)
++++++...++++++.|+|++| |.| |+++.|.+.++++|.+|+++|+||.+...+.||+.|+++|+|.+|+
T Consensus 71 ---el~d~~~~~~~~~~~~l~IsfD~F~r---Tt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-- 142 (558)
T COG0143 71 ---ELVDKNHEEFKELFKALNISFDNFIR---TTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-- 142 (558)
T ss_pred ---HHHHHHHHHHHHHHHHhCCccccccc---CCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchhee--
Confidence 5578999999999999999999 888 9999999999999999999999999999999999999999999884
Q ss_pred ccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCce
Q 007761 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (590)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V 327 (590)
||
T Consensus 143 ---------------------------------------------------------------------------g~--- 144 (558)
T COG0143 143 ---------------------------------------------------------------------------GT--- 144 (558)
T ss_pred ---------------------------------------------------------------------------cc---
Confidence 33
Q ss_pred ecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCcee
Q 007761 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (590)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v 407 (590)
||.|+.+ +..|.-|++||.. .+|.++..|+|+.||..+
T Consensus 145 --cp~cg~~----------------~arGD~Ce~Cg~~------------------------~~P~~l~~p~~~i~g~~p 182 (558)
T COG0143 145 --CPKCGGE----------------DARGDQCENCGRT------------------------LDPTELINPVCVISGATP 182 (558)
T ss_pred --CCCcCcc----------------ccCcchhhhccCc------------------------CCchhcCCCeeEeeCCCc
Confidence 7777755 3678899999863 467777899999999999
Q ss_pred EEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeee-ecCcccccCeeEEcCCcccEEEeCC
Q 007761 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARN 485 (590)
Q Consensus 408 ~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISR-qr~WG~pIPi~~~~~~~~~~~~~~~ 485 (590)
+++.+++||++++++.++++++++++.-.+.|++.++.+.+||+ .++|||||| ...||+|+| +
T Consensus 183 ~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP-----~---------- 247 (558)
T COG0143 183 EVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVP-----G---------- 247 (558)
T ss_pred ccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCC-----C----------
Confidence 99999999999999999999999987767899999999999998 599999999 999999999 1
Q ss_pred hhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCC--CChhhhhhcCCcc----EEEEeechhhH----HHH
Q 007761 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD--VSADDFKKFYPTT----MLETGHDILFF----WVA 555 (590)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~--~~~~~f~~~~P~d----~~~~G~Dil~~----W~~ 555 (590)
-+..|++||||+.+.|++.++... ...++|++|||.| ++++||||++| |++
T Consensus 248 -------------------~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPa 308 (558)
T COG0143 248 -------------------DPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPA 308 (558)
T ss_pred -------------------CCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHH
Confidence 136899999999999999998775 3457899999999 99999999975 999
Q ss_pred HHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 556 ~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+++..+.. .| +.|++||+++ .+|+|||||
T Consensus 309 mL~~~~~~----lP-~~i~ahg~l~-~~G~KmSKS 337 (558)
T COG0143 309 MLMAAGLP----LP-TRIFAHGFLT-LEGQKMSKS 337 (558)
T ss_pred HHHhCCCC----CC-CEEEeeeeEE-ECCcccccc
Confidence 98888876 48 9999999998 799999999
No 35
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-59 Score=531.26 Aligned_cols=293 Identities=26% Similarity=0.417 Sum_probs=259.6
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 007761 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~ 168 (590)
+++|+|++|+|||||++||||+++++++|+++||+|++|++|.+++|+|+||++| +..|++.|+++.
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i----~~~A~~~g~~~~--------- 69 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKI----QQAAEKAGKTPQ--------- 69 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHH----HHHHHHcCCCHH---------
Confidence 3589999999999999999999999999999999999999999999999999985 445677898876
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCcccccc
Q 007761 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (590)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (590)
++++++.+.|+++|++|||++| |.+ |+++.|.+.++++|.+|+++|+||++++.++||+.|+++|++.++..
T Consensus 70 ---e~~d~~~~~fk~~l~~lgI~~D~f~r---Tt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~- 142 (648)
T PRK12267 70 ---EYVDEISAGFKELWKKLDISYDKFIR---TTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVD- 142 (648)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCCCCee---CCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhcc-
Confidence 5678999999999999999999 655 88999999999999999999999999999999999999999876410
Q ss_pred ccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCce
Q 007761 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (590)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V 327 (590)
T Consensus 143 -------------------------------------------------------------------------------- 142 (648)
T PRK12267 143 -------------------------------------------------------------------------------- 142 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCcee
Q 007761 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (590)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v 407 (590)
.|+|++||+++
T Consensus 143 ---------------------------------------------------------------------~~~c~~cg~~~ 153 (648)
T PRK12267 143 ---------------------------------------------------------------------GGKCPDCGREV 153 (648)
T ss_pred ---------------------------------------------------------------------CCcCCCCCCcC
Confidence 14699999999
Q ss_pred EEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHH-HHHhc-CCCeeeeeec-CcccccCeeEEcCCcccEEEeC
Q 007761 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYN-HWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVAR 484 (590)
Q Consensus 408 ~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~-~~l~~-l~DW~ISRqr-~WG~pIPi~~~~~~~~~~~~~~ 484 (590)
+++.++||||++++++++++++++++...+.|+..++.+. +||++ ++|||||||+ .||+|||.+
T Consensus 154 e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~------------- 220 (648)
T PRK12267 154 ELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD------------- 220 (648)
T ss_pred eEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC-------------
Confidence 9999999999999999999999986555577999999998 99996 9999999997 699999941
Q ss_pred ChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhH----HHHHHHHh
Q 007761 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMM 560 (590)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~----W~~~~~~~ 560 (590)
+++|+||||||+++|++.++|+....++|++|||+|++++|+||++| |+++++++
T Consensus 221 ---------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~ 279 (648)
T PRK12267 221 ---------------------PKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMAL 279 (648)
T ss_pred ---------------------CCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhC
Confidence 25899999999999999999986555679999999999999999985 44544443
Q ss_pred hccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 561 GIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 561 ~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+ ..|+++|++|||+++ +|+|||||
T Consensus 280 ~-----~~~p~~v~~hg~l~~-eg~KMSKS 303 (648)
T PRK12267 280 G-----LPLPKKVFAHGWWLM-KDGKMSKS 303 (648)
T ss_pred C-----CCCCcEEEecceEEE-CCceeccc
Confidence 3 347799999999996 79999999
No 36
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-58 Score=526.94 Aligned_cols=318 Identities=25% Similarity=0.439 Sum_probs=274.3
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~ 169 (590)
++|+|++|||||||.|||||+++++++|+++||+|++|++|.+++|+|+||++|+.. |++.|.++.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~----A~~~g~~p~---------- 67 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLK----AEKEGITPE---------- 67 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHH----HHHcCCCHH----------
Confidence 579999999999999999999999999999999999999999999999999996544 556788876
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccc
Q 007761 170 VWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (590)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (590)
++++++.+.+++++++|||++| |.+ |+++.|.+.++++|.+|+++|+||+++++++|||.|+++|++.+|+
T Consensus 68 --e~~~~~~~~~~~~~~~l~i~~d~f~r---tt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~--- 139 (673)
T PRK00133 68 --ELIARYHAEHKRDFAGFGISFDNYGS---THSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK--- 139 (673)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCCCCcc---CCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee---
Confidence 5678999999999999999999 333 8899999999999999999999999999999999999999997652
Q ss_pred cCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCcee
Q 007761 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~ 328 (590)
||
T Consensus 140 --------------------------------------------------------------------------g~---- 141 (673)
T PRK00133 140 --------------------------------------------------------------------------GT---- 141 (673)
T ss_pred --------------------------------------------------------------------------cc----
Confidence 32
Q ss_pred cCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeE
Q 007761 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (590)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (590)
||.|+.. |.+|..|+.||.. .++.+...|+|.+||++++
T Consensus 142 -cp~C~~~----------------d~~g~~ce~cg~~------------------------~~~~~l~~~~~~~~g~~~e 180 (673)
T PRK00133 142 -CPKCGAE----------------DQYGDNCEVCGAT------------------------YSPTELINPKSAISGATPV 180 (673)
T ss_pred -cCCCCCc----------------ccCCchhhhcccc------------------------CChHhhcCCccccCCCcce
Confidence 6766654 3578888888863 2344556789999999999
Q ss_pred EeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeeeecCc-ccccCeeEEcCCcccEEEeCCh
Q 007761 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLWW-GHRIPVWYIVGKEEEYIVARNA 486 (590)
Q Consensus 409 ~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISRqr~W-G~pIPi~~~~~~~~~~~~~~~~ 486 (590)
++.++||||+++++++.+++++++ +..| |++.++.+.+||+ .++|||||||+.| |+|+| +
T Consensus 181 ~~~~~~~f~~l~~~~~~l~~~~~~-~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP-----~----------- 242 (673)
T PRK00133 181 LKESEHFFFKLPRFEEFLKEWITR-SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIP-----G----------- 242 (673)
T ss_pred EEecceEEEEHHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECC-----C-----------
Confidence 999999999999999999999964 4455 8899999999998 6999999999999 99999 1
Q ss_pred hHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhc-CCCCC-ChhhhhhcCCcc-----EEEEeechhh----HHHH
Q 007761 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDV-SADDFKKFYPTT-----MLETGHDILF----FWVA 555 (590)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~-~~~~~-~~~~f~~~~P~d-----~~~~G~Dil~----~W~~ 555 (590)
.+..|++||||+.++|++.. +|+.. +..+|++||+.+ ++++|+||++ +|++
T Consensus 243 ------------------~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa 304 (673)
T PRK00133 243 ------------------APGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPA 304 (673)
T ss_pred ------------------CCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHH
Confidence 13689999999999998877 56654 335688999533 8999999998 4888
Q ss_pred HHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 556 ~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
++++.++. +| ++|++||||++ +|+|||||
T Consensus 305 ~l~a~g~~----lP-~~v~~hg~v~~-~G~KMSKS 333 (673)
T PRK00133 305 MLEGAGYR----LP-TNVFAHGFLTV-EGAKMSKS 333 (673)
T ss_pred HHHhCCCC----CC-CEEeeeccEEe-cCCccccc
Confidence 88776553 46 99999999997 99999998
No 37
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.7e-57 Score=474.91 Aligned_cols=277 Identities=37% Similarity=0.705 Sum_probs=252.2
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~ 170 (590)
+|+|++|||||||.|||||+++++++|+++||+|++|++|.+++|+|+||+||+.++++.. +.......+++|.+.|
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~---~~~~~~~~~~~~~~~~ 77 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG---GRKKKTIWIEEFREDP 77 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc---CcccccccHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999877766543 2233344578999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccccC
Q 007761 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (590)
Q Consensus 171 ~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (590)
++|++++.+.|+++|++|||++||++.+.|+++.|.+.++++|.+|+++|+||++.++|
T Consensus 78 ~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v--------------------- 136 (312)
T cd00668 78 KEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV--------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee---------------------
Confidence 99999999999999999999999999999999999999999999999999999987644
Q ss_pred CeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceecC
Q 007761 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (590)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~ 330 (590)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEe
Q 007761 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (590)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (590)
+
T Consensus 137 -------------------------------------------------------------------------------~ 137 (312)
T cd00668 137 -------------------------------------------------------------------------------R 137 (312)
T ss_pred -------------------------------------------------------------------------------E
Confidence 2
Q ss_pred eecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHHH
Q 007761 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (590)
Q Consensus 411 ~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~ 490 (590)
.++|||++++++++++++.++.+ .+.|+..++.+.+||++..|||||||++||+|+|
T Consensus 138 ~~~~~f~~~~~l~~~~~~~~~~~--~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P--------------------- 194 (312)
T cd00668 138 ITEQWFFDMPKFKEKLLKALRRG--KIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP--------------------- 194 (312)
T ss_pred eeeeEEEEcHHHHHHHHHHHhcC--CcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC---------------------
Confidence 35689999999999999999754 4899999999999999878999999999999999
Q ss_pred HHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCC
Q 007761 491 EKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF 570 (590)
Q Consensus 491 ~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf 570 (590)
.+|+||||||+++|+++++++... +.|.++||.|++++|+||+++|+..+++++..+.+..||
T Consensus 195 ----------------~~~i~~Wfds~~~~~~~~~~~~~~-~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~ 257 (312)
T cd00668 195 ----------------EDVFDVWFDSGIGPLGSLGYPEEK-EWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPP 257 (312)
T ss_pred ----------------cccccchhhccHHHHHHcCCCccc-hhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCc
Confidence 589999999999999999988765 578999999999999999999999999998888777688
Q ss_pred cEEEEeceEEeCCCCccccC
Q 007761 571 SHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 571 ~~v~~hG~v~d~~G~KMSKS 590 (590)
+++++||++++++|+|||||
T Consensus 258 ~~~~~~g~~~~~~g~KmSKS 277 (312)
T cd00668 258 KNLLVHGFVLDEGGQKMSKS 277 (312)
T ss_pred ceeEECcEEEcCCCcccccc
Confidence 99999999998888999998
No 38
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-57 Score=506.51 Aligned_cols=297 Identities=26% Similarity=0.406 Sum_probs=263.1
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKR 169 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~ 169 (590)
++|+|++|||||||.+||||+|+++++|+++||+|++|++|.+++|+|+||.+|+ ..|++.|+++.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~----~~a~~~g~~~~---------- 66 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQ----RKAEEAGISPQ---------- 66 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHH----HHHHHcCCCHH----------
Confidence 5799999999999999999999999999999999999999999999999999854 45677888875
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccc
Q 007761 170 VWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (590)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (590)
++++.+...|+++|++|||.+| |.+ |+++.|.+.|+++|.+|+++|++|++.+.++||+.|+++|++.|+.
T Consensus 67 --~~~~~~~~~~~~~l~~l~I~~D~~~~---t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~--- 138 (511)
T PRK11893 67 --ELADRNSAAFKRLWEALNISYDDFIR---TTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI--- 138 (511)
T ss_pred --HHHHHHHHHHHHHHHHhCCCcCCcee---CCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc---
Confidence 5678899999999999999999 544 8889999999999999999999999999999999999999988641
Q ss_pred cCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCcee
Q 007761 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~ 328 (590)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeE
Q 007761 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (590)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (590)
++ .|+|+|||++++
T Consensus 139 --------------------------------------------------------------~~----~p~~~~~~~~~~ 152 (511)
T PRK11893 139 --------------------------------------------------------------ED----GYRCPPTGAPVE 152 (511)
T ss_pred --------------------------------------------------------------CC----CCCCCCCCCcce
Confidence 00 168999999999
Q ss_pred EeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeee-ecCcccccCeeEEcCCcccEEEeCCh
Q 007761 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARNA 486 (590)
Q Consensus 409 ~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISR-qr~WG~pIPi~~~~~~~~~~~~~~~~ 486 (590)
++.++|||++++++++++.+.++++...+.|+..++.+.+|++ +++|||||| |+.||+|||.+
T Consensus 153 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~--------------- 217 (511)
T PRK11893 153 WVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD--------------- 217 (511)
T ss_pred EEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC---------------
Confidence 9999999999999999999999754344579999999999999 599999999 99999999941
Q ss_pred hHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCCh---hhhhhcCCccEEEEeechhhHHHHHHHHhhcc
Q 007761 487 DEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIE 563 (590)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~---~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~ 563 (590)
+.+|+||||||+++|++..++|.+.. ++|.+|||.|++++|+||+++|....+++...
T Consensus 218 -------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a 278 (511)
T PRK11893 218 -------------------PKHVIYVWFDALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMA 278 (511)
T ss_pred -------------------CCceEEEEecCcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHh
Confidence 25799999999999999999887532 46899999999999999999877777666555
Q ss_pred ccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 564 FTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 564 l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+..+.| +.+++||||++ +|+|||||
T Consensus 279 ~~~~~p-~~~~~~g~v~~-~G~KMSKS 303 (511)
T PRK11893 279 AGLPLP-KRVFAHGFLTL-DGEKMSKS 303 (511)
T ss_pred CCCCCC-CEEEeeccEEE-CCeeeccc
Confidence 556888 99999999996 89999998
No 39
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=1.1e-56 Score=514.21 Aligned_cols=323 Identities=21% Similarity=0.325 Sum_probs=275.6
Q ss_pred CCCCCCCEEEeCCCCCCCCCCCchhhHH-HHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCH
Q 007761 85 FERGSDPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSR 163 (590)
Q Consensus 85 ~~~~~k~f~i~~~pP~pnG~LHiGH~r~-~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~ 163 (590)
+..+.++|+||+|+|||||+|||||+++ ++.+|+++||+||+|++|+|++|+|+||++|+. .|.+.|.+|.
T Consensus 12 ~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~----~A~~~g~~p~---- 83 (801)
T PLN02610 12 PIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATET----KALEENCTPK---- 83 (801)
T ss_pred CCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHH----HHHHcCCCHH----
Confidence 3445678999999999999999999997 577999999999999999999999999999654 4566788887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCc
Q 007761 164 DEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDL 242 (590)
Q Consensus 164 e~f~~~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~ 242 (590)
++++++...+++++++|||++| |.+ |+++.|.+.|+++|.+|+++|+||++.+.++|||.|+++|+|.
T Consensus 84 --------e~~d~~~~~~~~~~~~l~i~~D~f~r---T~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~ 152 (801)
T PLN02610 84 --------EICDKYHAIHKEVYDWFDISFDKFGR---TSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADR 152 (801)
T ss_pred --------HHHHHHHHHHHHHHHHcCCccccCcc---CCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchH
Confidence 6678999999999999999999 655 8999999999999999999999999999999999999999998
Q ss_pred cccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCC
Q 007761 243 EVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEF 322 (590)
Q Consensus 243 Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~ 322 (590)
.|+
T Consensus 153 ~v~----------------------------------------------------------------------------- 155 (801)
T PLN02610 153 LVE----------------------------------------------------------------------------- 155 (801)
T ss_pred Hhc-----------------------------------------------------------------------------
Confidence 763
Q ss_pred CCCceecCCC--CChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCccc
Q 007761 323 GTGVLKISPG--HDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRS 400 (590)
Q Consensus 323 GTG~V~~~P~--h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~ 400 (590)
|| ||. |+.+ +.+|..|+.||.+ .++.++..|+|
T Consensus 156 G~-----CP~~~C~~~----------------~a~Gd~Ce~Cg~~------------------------~~p~eLi~p~c 190 (801)
T PLN02610 156 GT-----CPTEGCNYD----------------SARGDQCEKCGKL------------------------LNPTELIDPKC 190 (801)
T ss_pred Cc-----CCccccCcc----------------ccccchhhhcccc------------------------CChhhhcCCcc
Confidence 33 776 6654 4689999999864 47788899999
Q ss_pred CCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecch---HHHHHHHHHh-cCCCeeeeeecCcccccCeeEEcCC
Q 007761 401 QRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPER---FEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGK 476 (590)
Q Consensus 401 ~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~---~~~~~~~~l~-~l~DW~ISRqr~WG~pIPi~~~~~~ 476 (590)
.+||.+++.+.++||||+++++++.++++++.+. +.|+. ..+.+.+||+ .++||||||+..||+|+|. ++
T Consensus 191 ~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~---~~- 264 (801)
T PLN02610 191 KVCKNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPL---EK- 264 (801)
T ss_pred cCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCC---CC-
Confidence 9999999999999999999999999999997543 34543 3445569997 6999999999999999994 11
Q ss_pred cccEEEeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhc-CCCCCChhhhhhcCCc--c---EEEEeechh
Q 007761 477 EEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSADDFKKFYPT--T---MLETGHDIL 550 (590)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~-~~~~~~~~~f~~~~P~--d---~~~~G~Dil 550 (590)
-+..|++||||+.+.|++.+ +|. ++|++|||. | +++.|+||+
T Consensus 265 ----------------------------~~~~v~YVWfDAl~~Yis~~~~~~----~~~~~~W~~~~~~~~~hfiGKDi~ 312 (801)
T PLN02610 265 ----------------------------YKDKVFYVWFDAPIGYVSITACYT----PEWEKWWKNPENVELYQFMGKDNV 312 (801)
T ss_pred ----------------------------CCCcEEEEehhhHHHHHHHHhhhh----hHHHHhcCCcccceEEEEEeeecc
Confidence 13689999999999999886 663 248889976 7 899999999
Q ss_pred hH----HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 551 FF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 551 ~~----W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+| |++++++++.. -..| ++|++|||++ .+|+|||||
T Consensus 313 ~fH~i~wPa~L~a~g~~--~~~p-~~i~~~g~l~-~eG~KMSKS 352 (801)
T PLN02610 313 PFHTVMFPSTLLGTGEN--WTMM-KTISVTEYLN-YEGGKFSKS 352 (801)
T ss_pred hhHHHHHHHHHHhCCCC--cCCC-CEEEeccCEe-cCCceecCc
Confidence 85 88887776642 1246 9999999997 899999999
No 40
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.2e-54 Score=484.33 Aligned_cols=295 Identities=23% Similarity=0.352 Sum_probs=253.2
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHH
Q 007761 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFT 167 (590)
Q Consensus 88 ~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~ 167 (590)
++++|+|++|||||||+|||||+++++++|+++||+||+|++|.+++|+|+||++|+ +.|++.|.++.
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~----~~A~~~g~~p~-------- 134 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIA----TSAAANGRNPP-------- 134 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHH----HHHHHcCCChH--------
Confidence 367899999999999999999999999999999999999999999999999999965 44667788775
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCcccccc
Q 007761 168 KRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (590)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (590)
++++++...+++++++|||++| ..+.|+++.|.+.|+++|.+|+++|+||+++++++|||+|++++.+.|+.
T Consensus 135 ----e~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~-- 206 (616)
T PLN02224 135 ----EHCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL-- 206 (616)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc--
Confidence 4567788899999999999887 33349999999999999999999999999999999999999887665431
Q ss_pred ccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCce
Q 007761 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (590)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V 327 (590)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCcee
Q 007761 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (590)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v 407 (590)
+ .+.|..||.++
T Consensus 207 ---------------------------------------------------------------~-----~~~~~~~~~~~ 218 (616)
T PLN02224 207 ---------------------------------------------------------------E-----NNCCPVHQMPC 218 (616)
T ss_pred ---------------------------------------------------------------C-----CCCCCCCCCcc
Confidence 0 02366789999
Q ss_pred EEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeeeec-CcccccCeeEEcCCcccEEEeCC
Q 007761 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARN 485 (590)
Q Consensus 408 ~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISRqr-~WG~pIPi~~~~~~~~~~~~~~~ 485 (590)
+.+.+++||++++++++.++++++.+.-.+.|+..++.+.+||+ .|+||||||++ .||+|+|.
T Consensus 219 ~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~--------------- 283 (616)
T PLN02224 219 VARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPD--------------- 283 (616)
T ss_pred eEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCC---------------
Confidence 99999999999999999999999765444679999999999999 59999999986 79999992
Q ss_pred hhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCC---hhhhhhcCCccEEEEeechhhH----HHHHHH
Q 007761 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---ADDFKKFYPTTMLETGHDILFF----WVARMV 558 (590)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~---~~~f~~~~P~d~~~~G~Dil~~----W~~~~~ 558 (590)
.+++|++||||+.+.|++.+++.... ...|..+||.|++++|+||++| |+++++
T Consensus 284 -------------------~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~ 344 (616)
T PLN02224 284 -------------------DDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLM 344 (616)
T ss_pred -------------------CCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHH
Confidence 13689999999999999988875432 1135668999999999999985 888876
Q ss_pred HhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 559 MMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 559 ~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
++++ .+| ++|++||+++ .+|+|||||
T Consensus 345 ~~g~----~~P-~~i~~~g~l~-~eG~KMSKS 370 (616)
T PLN02224 345 SAGL----ELP-KMVFGHGFLT-KDGMKMGKS 370 (616)
T ss_pred HCCC----CCC-cEEEecccEe-cCCcccccc
Confidence 6554 347 9999999975 899999999
No 41
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=3.6e-55 Score=468.26 Aligned_cols=316 Identities=28% Similarity=0.511 Sum_probs=257.9
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 007761 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (590)
Q Consensus 92 f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~ 171 (590)
|+||+|+|||||.|||||+..++.+|+++||+|++|++|.+++|+|+||++ ++.+|+++|++|.
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~----i~~~A~~~g~~p~------------ 64 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSK----IETAAEKQGIDPE------------ 64 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHH----HHHHHHHTTS-HH------------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHH----HHHHHHHcCCCHH------------
Confidence 789999999999999999999999999999999999999999999999999 5566778899987
Q ss_pred HHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccccC
Q 007761 172 EWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (590)
Q Consensus 172 ~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (590)
++++++.+.+++++++|||++| |.+ |+++.|.+.|+++|++|+++|+||+++..++||+.|+++++|.+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~I~~D~F~r---Tt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~----- 136 (391)
T PF09334_consen 65 EFCDKYSAKFKELLEALNISYDRFIR---TTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE----- 136 (391)
T ss_dssp HHHHHHHHHHHHHHHHTT---SEEEE---TTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET-----
T ss_pred HHHHHHHHHHHHHHHHcCCCCcceeC---CCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee-----
Confidence 5678999999999999999999 777 8899999999999999999999999999999999999999999874
Q ss_pred CeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceecC
Q 007761 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (590)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~ 330 (590)
| .|
T Consensus 137 ------------------------------------------------------------------------g-----~C 139 (391)
T PF09334_consen 137 ------------------------------------------------------------------------G-----TC 139 (391)
T ss_dssp ------------------------------------------------------------------------C-----EE
T ss_pred ------------------------------------------------------------------------c-----cc
Confidence 2 26
Q ss_pred CCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEe
Q 007761 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (590)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (590)
|.|+.+ +..|..|++||.. .++.+...|+|..||++++.+
T Consensus 140 P~C~~~----------------~a~g~~Ce~cG~~------------------------~~~~~l~~p~~~~~g~~~~~r 179 (391)
T PF09334_consen 140 PYCGSD----------------KARGDQCENCGRP------------------------LEPEELINPVCKICGSPPEVR 179 (391)
T ss_dssp TTT--S----------------SCTTTEETTTSSB------------------------EECCCSECEEETTTS-B-EEE
T ss_pred cCcCcc----------------ccCCCcccCCCCC------------------------cccccccCCccccccccCccc
Confidence 766643 3578888888863 567788999999999999999
Q ss_pred eecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhc-CCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHH
Q 007761 411 VSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA 489 (590)
Q Consensus 411 ~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~-l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~ 489 (590)
.++|||++++++++.+.+.++..... .|...++.+.+||++ ++||||||...||+|+| +
T Consensus 180 ~e~~~ff~L~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP-----~-------------- 239 (391)
T PF09334_consen 180 EEENYFFKLSKFRDQLREWLESNPDF-PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP-----G-------------- 239 (391)
T ss_dssp EEEEEEE-GGGGHHHHHHHHHHSTTS-SHHHHHHHHHHHHHT----EE-ECTTSSSEEET-----T--------------
T ss_pred cceEEEEehHHhHHHHHHHHhcCCCC-CChhHHHHHHHHhhcccCceeeecCCCCcceee-----c--------------
Confidence 99999999999999999999865432 677888999999995 99999999999999999 1
Q ss_pred HHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCC---CChhhhhhcCCcc------EEEEeechhhH----HHHH
Q 007761 490 LEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPD---VSADDFKKFYPTT------MLETGHDILFF----WVAR 556 (590)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~---~~~~~f~~~~P~d------~~~~G~Dil~~----W~~~ 556 (590)
.+..|++||||+.+.|++.++... ...+.|+++| ++ +++.|+||++| |++.
T Consensus 240 ---------------~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w-~~~~~~~~v~~iGkDi~~fH~i~~pa~ 303 (391)
T PF09334_consen 240 ---------------DPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWW-ANDSDVEIVHFIGKDIIRFHAIYWPAM 303 (391)
T ss_dssp ---------------EEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHH-CST--SEEEEEEEGGGHHHHHTHHHHH
T ss_pred ---------------cCCceEEEcchHHHHHHHHhccccccccccchhhhhc-cccCCceEEEEEccchhHHHHHHhHHH
Confidence 136899999999999999998765 2346788888 33 99999999986 7877
Q ss_pred HHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 557 MVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 557 ~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+++.++. +| +.+++|||++ .+|+|||||
T Consensus 304 l~a~~~~----lP-~~i~~~~~~~-~~g~K~SkS 331 (391)
T PF09334_consen 304 LLAAGLP----LP-RRIVVHGFLT-LDGEKMSKS 331 (391)
T ss_dssp HHHCTB--------SEEEEE--EE-ETTCCEETT
T ss_pred HhcccCC----CC-CEEEeeeeEE-ECCeecccc
Confidence 7775554 47 9999999998 799999999
No 42
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=3.4e-52 Score=435.95 Aligned_cols=274 Identities=28% Similarity=0.442 Sum_probs=239.1
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~ 170 (590)
+|+|++|||||||.|||||+++++++|+++||+|++|++|.+++|+|+||++|+. +|++.|.++.
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~----~a~~~g~~~~----------- 65 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQ----KAEEEGVTPQ----------- 65 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHH----HHHHcCCCHH-----------
Confidence 5899999999999999999999999999999999999999999999999999644 4566788775
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCcccccccc
Q 007761 171 WEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 249 (590)
Q Consensus 171 ~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~ 249 (590)
++++.+.+.+++++++|||.+| |.+ |+++.|.+.++++|++|.++|++|+++..++|||.|+++|+
T Consensus 66 -e~~~~~~~~~~~~l~~LgI~~D~~~~---tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------- 132 (319)
T cd00814 66 -ELCDKYHEIFKDLFKWLNISFDYFIR---TTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------- 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHcCCcCCCCee---CCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------
Confidence 5678899999999999999988 544 78888999999999999999999999999999999988665
Q ss_pred CCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceec
Q 007761 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (590)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~ 329 (590)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEE
Q 007761 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEP 409 (590)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~ 409 (590)
++
T Consensus 133 ------------------------------------------------------------------------------e~ 134 (319)
T cd00814 133 ------------------------------------------------------------------------------EW 134 (319)
T ss_pred ------------------------------------------------------------------------------EE
Confidence 24
Q ss_pred eeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhc-CCCeeeeeec-CcccccCeeEEcCCcccEEEeCChh
Q 007761 410 LVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNAD 487 (590)
Q Consensus 410 ~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~-l~DW~ISRqr-~WG~pIPi~~~~~~~~~~~~~~~~~ 487 (590)
+.++|||++++++++.+++.++++...+.|++.++.+.+||++ ++|||||||. .||+|+|.
T Consensus 135 ~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~----------------- 197 (319)
T cd00814 135 REEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPL----------------- 197 (319)
T ss_pred EeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCC-----------------
Confidence 5567999999999999999998766668899999999999996 9999999999 99999994
Q ss_pred HHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCCh---hhhhhcCCccEEEEeechhhH----HHHHHHHh
Q 007761 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFF----WVARMVMM 560 (590)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~---~~f~~~~P~d~~~~G~Dil~~----W~~~~~~~ 560 (590)
-+.+|++|||||.+.|++..+++.... ..|...+|.+++++|+||++| |++.++++
T Consensus 198 -----------------~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~ 260 (319)
T cd00814 198 -----------------DPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGA 260 (319)
T ss_pred -----------------CCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhC
Confidence 126899999999999999888765532 246677899999999999985 66654443
Q ss_pred hccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 561 GIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 561 ~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+ ..|++.+++||+++. +|+|||||
T Consensus 261 ~-----~~~~~~~~~~~~~~~-~g~kmSkS 284 (319)
T cd00814 261 G-----LPLPTRIVAHGYLTV-EGKKMSKS 284 (319)
T ss_pred C-----CCCCcEeeeeeeEEE-CCeeeccc
Confidence 3 345699999999995 79999998
No 43
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.2e-48 Score=408.16 Aligned_cols=262 Identities=28% Similarity=0.463 Sum_probs=220.2
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~ 170 (590)
+|+|++|||||||.+||||+++++++|+++||+|++|++|.+++|+|+||+|++. ++++.|.++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~----~a~~~g~~~------------ 64 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAEN----AAIKIGRDP------------ 64 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHH----HHHHcCCCH------------
Confidence 6899999999999999999999999999999999999999999999999999544 455667654
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccccC
Q 007761 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP 250 (590)
Q Consensus 171 ~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~ 250 (590)
.+|++++.+.++++|++|||++||...+.|++++|.+.++++|.+|+++|+||++.++++||
T Consensus 65 ~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~------------------ 126 (314)
T cd00812 65 EDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC------------------ 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee------------------
Confidence 37889999999999999999999988888999999999999999999999999999999887
Q ss_pred CeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceecC
Q 007761 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKIS 330 (590)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~ 330 (590)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEe
Q 007761 331 PGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL 410 (590)
Q Consensus 331 P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~ 410 (590)
+
T Consensus 127 -------------------------------------------------------------------------------~ 127 (314)
T cd00812 127 -------------------------------------------------------------------------------K 127 (314)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred eeccccccc--chHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhH
Q 007761 411 VSKQWFVTM--EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADE 488 (590)
Q Consensus 411 ~~~QWFi~~--~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~ 488 (590)
.++|||+++ +++++++.+++++ +.+.|++.++.+.+||+ ||||+.||+|+|+
T Consensus 128 ~~~~~f~~l~~~~~~~~l~~~l~~--~~~~p~~~~~~~~~~l~------isR~~~wGipvP~------------------ 181 (314)
T cd00812 128 LLDQWFLKYSETEWKEKLLKDLEK--LDGWPEEVRAMQENWIG------CSRQRYWGTPIPW------------------ 181 (314)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHh--cCcCCHHHHHHHHHHhe------eeeecCCcCCcCc------------------
Confidence 246999999 8999999999975 45799999999999997 9999999999994
Q ss_pred HHHHhhhhcCCCcceeecCceeEEeecCCchhhhh---cCCCCC-------ChhhhhhcCCccEEEEeechhhHHHHHHH
Q 007761 489 ALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFST---LGWPDV-------SADDFKKFYPTTMLETGHDILFFWVARMV 558 (590)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~---~~~~~~-------~~~~f~~~~P~d~~~~G~Dil~~W~~~~~ 558 (590)
++|+|+||||.+++... ...... .+++|++|||+|++++|+||+++|...++
T Consensus 182 ------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 182 ------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSR 243 (314)
T ss_pred ------------------ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHH
Confidence 47899999999744322 221111 23569999999999999999887743222
Q ss_pred Hhhccc--cC---CCCCcEEEEeceEEeCCCCccccC
Q 007761 559 MMGIEF--TG---SVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 559 ~~~~~l--~~---~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+....+ .+ ..|++++++||+|+ .+|+|||||
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS 279 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKS 279 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEe-cCccccCCc
Confidence 221111 12 23559999999998 699999998
No 44
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-48 Score=396.50 Aligned_cols=300 Identities=25% Similarity=0.438 Sum_probs=265.2
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHH
Q 007761 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFT 167 (590)
Q Consensus 88 ~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~ 167 (590)
++++|++|+|.-|||..+||||+++.+++|+++|++|++|..|++.+|+|+||++| +.+|+..|.+|.+
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKI----qtaaatnG~~P~e------- 105 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKI----QTAAATNGRNPPE------- 105 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhh----hhhHhhcCCChHH-------
Confidence 45699999999999999999999999999999999999999999999999999995 4556778998874
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccc
Q 007761 168 KRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (590)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~ 246 (590)
.++...+.+.+..+.+||.++ |.| |++|.|...|++++..+.++|+||++++..+||.+|+|+..+.+|..
T Consensus 106 -----~cDr~s~~f~qL~k~~gi~yt~FIR---TTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k 177 (578)
T KOG0436|consen 106 -----LCDRISQSFRQLWKDAGIAYTKFIR---TTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK 177 (578)
T ss_pred -----HHhhhhHHHHHHHHHhCcchhheee---cCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhc
Confidence 457888899999999999999 887 99999999999999999999999999999999999999999988742
Q ss_pred cccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCc
Q 007761 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (590)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~ 326 (590)
...
T Consensus 178 ~p~----------------------------------------------------------------------------- 180 (578)
T KOG0436|consen 178 NPC----------------------------------------------------------------------------- 180 (578)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred eecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCce
Q 007761 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (590)
Q Consensus 327 V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (590)
+| | + ++.-.||+|
T Consensus 181 ---~~------------------------g-------k---------------------------------~vsmEsg~~ 193 (578)
T KOG0436|consen 181 ---PP------------------------G-------K---------------------------------VVSMESGNP 193 (578)
T ss_pred ---CC------------------------C-------c---------------------------------eeeeccCCc
Confidence 00 0 0 112237999
Q ss_pred eEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeee--e-cCcccccCeeEEcCCcccEEE
Q 007761 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--Q-LWWGHRIPVWYIVGKEEEYIV 482 (590)
Q Consensus 407 v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISR--q-r~WG~pIPi~~~~~~~~~~~~ 482 (590)
|+.+.++.+|++++++.+++.+.++.+.-.+.|+..++....||+ +++|-.||| + ..||+|+| +|
T Consensus 194 vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP-------~d---- 262 (578)
T KOG0436|consen 194 VVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVP-------GD---- 262 (578)
T ss_pred eeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCC-------CC----
Confidence 999999999999999999999999887777899999999999999 799999999 4 59999999 12
Q ss_pred eCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCC---ChhhhhhcCCccEEEEeechhhH----HHH
Q 007761 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV---SADDFKKFYPTTMLETGHDILFF----WVA 555 (590)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~---~~~~f~~~~P~d~~~~G~Dil~~----W~~ 555 (590)
++++++||||+.+.|++++|+|.+ .+..+.-+||+.++++||||++| |++
T Consensus 263 -----------------------dsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPa 319 (578)
T KOG0436|consen 263 -----------------------DSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPA 319 (578)
T ss_pred -----------------------CcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHH
Confidence 378999999999999999999853 34567889999999999999986 999
Q ss_pred HHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 556 RMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 556 ~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
++|+.|+.+ | +.|++||+++ .+|+|||||
T Consensus 320 fLmaAGlpl----P-~~I~vHghwt-~ngmKMsKS 348 (578)
T KOG0436|consen 320 FLMAAGLPL----P-KMIFVHGHWT-KNGMKMSKS 348 (578)
T ss_pred HHHhcCCCC----c-cEEEEeeeee-ecceecchh
Confidence 999999976 7 9999999998 899999998
No 45
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-33 Score=286.43 Aligned_cols=329 Identities=20% Similarity=0.319 Sum_probs=264.9
Q ss_pred CCCCCCCEEEeCCCCCCCCCCCchhhHHHHH-HHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCH
Q 007761 85 FERGSDPFVISMPPPNVTGSLHMGHAMFVTL-EDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSR 163 (590)
Q Consensus 85 ~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl-~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~ 163 (590)
+..+....+|+.+.||+|..+|+|++-+.++ +||+|||.+.+|++.++++|+|+.|.+++. .|.++|.+|.++
T Consensus 9 p~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatet----kaleeg~tP~el-- 82 (567)
T KOG1247|consen 9 PAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATET----KALEEGLTPQEL-- 82 (567)
T ss_pred cCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHH----HHHHccCCHHHH--
Confidence 3456677999999999999999999998655 999999999999999999999999999644 467889999855
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCc
Q 007761 164 DEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDL 242 (590)
Q Consensus 164 e~f~~~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~ 242 (590)
.+++...++.....++|++| |.+ |+.+...+..|.+|.+|+++|++-+..-.+.||..|++.|+|.
T Consensus 83 ----------cdKyh~ihk~vy~Wf~IdfD~fgr---tTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr 149 (567)
T KOG1247|consen 83 ----------CDKYHGIHKVVYDWFKIDFDEFGR---TTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADR 149 (567)
T ss_pred ----------HHhcchhHHHHHHhhcccccccCc---ccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccch
Confidence 47899999999999999999 776 7777788899999999999999999999999999999999998
Q ss_pred cccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCC
Q 007761 243 EVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEF 322 (590)
Q Consensus 243 Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~ 322 (590)
.|+
T Consensus 150 ~ve----------------------------------------------------------------------------- 152 (567)
T KOG1247|consen 150 FVE----------------------------------------------------------------------------- 152 (567)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 774
Q ss_pred CCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCC
Q 007761 323 GTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQR 402 (590)
Q Consensus 323 GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r 402 (590)
|+ ||.|+.+ |..|.+|++||.+ ....+...|.|..
T Consensus 153 g~-----cp~C~yd----------------~ARGDqcd~cG~l------------------------~N~~el~~pkc~i 187 (567)
T KOG1247|consen 153 GK-----CPFCGYD----------------DARGDQCDKCGKL------------------------VNAAELKIPKCKI 187 (567)
T ss_pred cc-----CCCCCCc----------------cccchhhhhhhhh------------------------cCHHHhcCcchhe
Confidence 32 7888887 4688888888864 2345667899999
Q ss_pred CCceeEEeeecccccccchHHHHHHHHHHcCCce-EecchHHHHHHHHHh-cCCCeeeeeecCcccccCeeEEcCCcccE
Q 007761 403 GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT-IMPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEY 480 (590)
Q Consensus 403 ~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~-~~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIPi~~~~~~~~~~ 480 (590)
|..-.+++.+.+.|+++++++.++.++++...+. -...+++++...||+ .++..||+|..-||+|+|. +
T Consensus 188 c~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl---e------ 258 (567)
T KOG1247|consen 188 CQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL---E------ 258 (567)
T ss_pred eccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcCh---h------
Confidence 9999999999999999999999999998753321 244578999999998 7999999999999999995 1
Q ss_pred EEeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCcc-----EEEEeechhhHHHH
Q 007761 481 IVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTT-----MLETGHDILFFWVA 555 (590)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d-----~~~~G~Dil~~W~~ 555 (590)
+-+..|++||||+.+.|.+....- .++|++||..- +.+.|||..-|+-.
T Consensus 259 -----------------------~fk~KVfYVWFDA~IGYlsit~~y---t~ew~kWwknpE~v~LyqFmgKDNVpFHtv 312 (567)
T KOG1247|consen 259 -----------------------KFKDKVFYVWFDAPIGYLSITKNY---TDEWEKWWKNPENVELYQFMGKDNVPFHTV 312 (567)
T ss_pred -----------------------hhcccEEEEEEcCcceEEEeehhh---hHHHHHHhcCHhhhhHHHHhccCCCcceee
Confidence 123679999999999887765421 26788888422 34579999877555
Q ss_pred HHHHhhccccCCCCC-cEEEEeceEEeCCCCccccC
Q 007761 556 RMVMMGIEFTGSVPF-SHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 556 ~~~~~~~~l~~~~Pf-~~v~~hG~v~d~~G~KMSKS 590 (590)
.+-...+....+++. ++|.+--++ +-+..|+|||
T Consensus 313 iFP~s~lgt~en~t~v~~l~aTeYL-nyE~gKFSKS 347 (567)
T KOG1247|consen 313 IFPCSQLGTEENYTVVHHLSATEYL-NYEDGKFSKS 347 (567)
T ss_pred ecchhhhcCCCCchhheeechhhhh-ccccCccccc
Confidence 544444444455554 333333444 5677799998
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.95 E-value=7.1e-28 Score=263.69 Aligned_cols=120 Identities=23% Similarity=0.277 Sum_probs=103.9
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 007761 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (590)
Q Consensus 95 ~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~ 174 (590)
+++ |+|+|++||||+|+++++|+++||+|++||+|.+++|+|++|.+ +.+.|++.|.++. +++
T Consensus 28 vcg-Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddk----i~~~A~~~g~~~~------------e~~ 90 (463)
T PRK00260 28 VCG-PTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDK----IIKRANEEGESIK------------ELT 90 (463)
T ss_pred EeC-CccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHH----HHHHHHHcCCCHH------------HHH
Confidence 345 88999999999999999999999999999999999999999987 4455677787776 567
Q ss_pred HHHHHHHHHHHHHhCC-cCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccC
Q 007761 175 EKYGGTITSQIKRLGA-SCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235 (590)
Q Consensus 175 ~~~~~~~~~~l~~LGi-~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~ 235 (590)
+.+.+.++++|++||| ..||.... | .|...+++++++|+++|++|+++++||||+..
T Consensus 91 ~~~~~~f~~~~~~Lgi~~~d~~~r~-t---~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~ 148 (463)
T PRK00260 91 ERYIAAFHEDMDALNVLPPDIEPRA-T---EHIPEIIELIERLIDKGHAYEADGDVYFDVRK 148 (463)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccc-c---ccHHHHHHHHHHHHHCCCEEEecCeEEEeccc
Confidence 8999999999999999 45654321 2 57888999999999999999999999999876
No 47
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=1.8e-26 Score=244.20 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=103.1
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
.++| |+|.+++||||+|+++.+|+++||+|++|++|.+++|+|+||.+ +.+.|+++|+++. ++
T Consensus 13 YvCG-pTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddK----Ii~~A~~~G~~~~------------e~ 75 (384)
T PRK12418 13 YVCG-ITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDP----LLERAARDGVDWR------------DL 75 (384)
T ss_pred EecC-CCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchH----HHHHHHHcCCCHH------------HH
Confidence 3456 77779999999999999999999999999999999999999988 4556778899987 45
Q ss_pred HHHHHHHHHHHHHHhCC-cCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcce----eEEEeccC
Q 007761 174 KEKYGGTITSQIKRLGA-SCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPNL 235 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi-~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~----~v~w~p~~ 235 (590)
++++.+.+.+++++||| ..| +.+ |++ +.+.+++++++|.++|++|++++ .|||+...
T Consensus 76 a~~~~~~f~~d~~~Lni~~~~~~~r---aTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 138 (384)
T PRK12418 76 AEREIALFREDMEALRVLPPRDYVG---AVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA 138 (384)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccc---CCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc
Confidence 68899999999999997 555 433 444 48889999999999999999998 79887644
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.94 E-value=1.9e-26 Score=252.04 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=106.5
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
..++ |+|+|.+||||+|+++.+|+++||+|++||+|.+++|+|++|.+ +.+.|++.|+++. ++
T Consensus 25 yvcg-ptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddk----Ii~~A~~~g~~~~------------e~ 87 (465)
T TIGR00435 25 YVCG-PTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDK----IIKRARENGESVY------------EV 87 (465)
T ss_pred EEec-CccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHH----HHHHHHHcCCCHH------------HH
Confidence 3455 69999999999999999999999999999999999999999988 4556778899886 45
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcc-eeEEEeccCC
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPNLQ 236 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~-~~v~w~p~~~ 236 (590)
++.+.+.+.+++++|||.+|..... ...|...+.+++++|.++|++|+.+ +.||||+.+.
T Consensus 88 a~~~~~~f~~dl~~LgI~~d~~~~r---aT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~ 148 (465)
T TIGR00435 88 SERFIEAYFEDMKALNVLPPDLEPR---ATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF 148 (465)
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCcc---ccccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc
Confidence 6889999999999999999943222 2268888999999999999999998 9999998773
No 49
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.94 E-value=9.3e-26 Score=239.76 Aligned_cols=122 Identities=15% Similarity=0.141 Sum_probs=101.9
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~ 170 (590)
++++ ++ |+|.+.+||||+|++|.+|+++||+|+.||+|.+++|+|+||.+ +.+.|+++|+++.
T Consensus 38 ~~Yv-CG-pTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDK----Ii~~A~~~g~t~~----------- 100 (411)
T TIGR03447 38 GMYV-CG-ITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDP----LFERAERDGVDWR----------- 100 (411)
T ss_pred eEEE-eC-CccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHH----HHHHHHHcCCCHH-----------
Confidence 3444 44 56669999999999999999999999999999999999999988 4556788899887
Q ss_pred HHHHHHHHHHHHHHHHHhCCc-CC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcce----eEEEeccC
Q 007761 171 WEWKEKYGGTITSQIKRLGAS-CD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY----MVNWSPNL 235 (590)
Q Consensus 171 ~~~~~~~~~~~~~~l~~LGi~-~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~----~v~w~p~~ 235 (590)
++++.+...+.+++++|||. +| +.+ +++ +.+.+++++++|+++|+||++++ .|||+.+.
T Consensus 101 -ela~~y~~~f~~d~~~Lni~~~d~~~R---aTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 165 (411)
T TIGR03447 101 -ELGTSQIDLFREDMEALRVLPPRDYIG---AVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA 165 (411)
T ss_pred -HHHHHHHHHHHHHHHHcCCCCCCcccC---CCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc
Confidence 45688999999999999986 44 444 333 47889999999999999999886 78887543
No 50
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.93 E-value=6e-26 Score=246.73 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=107.2
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC----------CCCCCCchHHHHHHHHHHHcCCCccccC
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP----------GTDHAGIATQLVVEKMLAAEGIKRVELS 162 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~----------G~D~~Gl~ie~~ve~~~~~~g~~~~~~~ 162 (590)
+-++| |+|++++||||+|++|..|+++||+++.||+|.+++ |.|+||.+ +.+.|++.|+++.
T Consensus 26 mYvCG-pTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddK----ii~~A~~~g~~~~--- 97 (490)
T PRK14536 26 LYGCG-PTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDK----MVKSAQEHGKSVL--- 97 (490)
T ss_pred EEeeC-CccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChH----HHHHHHHcCCCHH---
Confidence 34668 999999999999999999999999999999999996 77777877 4556778899886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccC
Q 007761 163 RDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235 (590)
Q Consensus 163 ~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~ 235 (590)
++++.+.+.+.+++++|||..+ .+++..++|.+.+++++++|+++|++|++++.||||+..
T Consensus 98 ---------e~a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~ 158 (490)
T PRK14536 98 ---------EIAAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT 158 (490)
T ss_pred ---------HHHHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc
Confidence 4568899999999999999987 122566899999999999999999999999999999843
No 51
>PLN02946 cysteine-tRNA ligase
Probab=99.92 E-value=6.6e-25 Score=240.94 Aligned_cols=134 Identities=15% Similarity=0.171 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCcc
Q 007761 80 YFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRV 159 (590)
Q Consensus 80 ~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~ 159 (590)
.|.+...+.-+.| ++| |+|.|.+||||+|++|..|+++||+++.||+|.+++|+|++|.+ +.+.|++.|+++.
T Consensus 72 ~f~P~~~~~v~~Y--~CG-pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDK----Ii~~A~~~g~~~~ 144 (557)
T PLN02946 72 LFKPKVEGKVGMY--VCG-VTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDK----IIARANELGEDPI 144 (557)
T ss_pred ccccCCCCceeEE--EeC-CccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCH----HHHHHHHcCCCHH
Confidence 3555433222233 458 99999999999999999999999999999999999999999998 4556778899887
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccC
Q 007761 160 ELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235 (590)
Q Consensus 160 ~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~ 235 (590)
++++++.+.+.+++++|||..++.+ |..++|...+++++++|+++|++|++++.||||+..
T Consensus 145 ------------ela~~y~~~f~~d~~~LnI~~p~~~---pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~ 205 (557)
T PLN02946 145 ------------SLSRRYCEEFLSDMAYLHCLPPSVE---PRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK 205 (557)
T ss_pred ------------HHHHHHHHHHHHHHHHCCCCCCCee---cCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc
Confidence 4568999999999999999844444 777899999999999999999999999999999764
No 52
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=2.2e-23 Score=225.73 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=105.7
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeee---------cCCCCCC-CchHHHHHHHHHHHcCCCccccC
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW---------LPGTDHA-GIATQLVVEKMLAAEGIKRVELS 162 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~---------~~G~D~~-Gl~ie~~ve~~~~~~g~~~~~~~ 162 (590)
+.++| |+|...+||||+|++|..|+++||++++||+|.+ ++|.|++ |.+ +.+.|+++|+++.
T Consensus 24 mY~CG-pTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddK----Ii~~A~~~g~~~~--- 95 (481)
T PRK14534 24 VYACG-PTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDK----VVKAARERGLTVY--- 95 (481)
T ss_pred EEeCC-CCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcH----HHHHHHHcCCCHH---
Confidence 44678 9999999999999999999999999999999999 5677444 444 5666788899987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccC
Q 007761 163 RDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235 (590)
Q Consensus 163 ~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~ 235 (590)
++++++.+.+.+++++|||..| +.+ ..++|.+.+++++++|.++|++|+..+.||||+.+
T Consensus 96 ---------e~a~~~~~~f~~d~~~Lni~~~~~~p----~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 96 ---------EISRFFTEAFFDDCKKLNIVYPDKVL----VASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred ---------HHHHHHHHHHHHHHHHcCCCCCceec----CccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 4568899999999999999988 333 35689999999999999999999999999999876
No 53
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.90 E-value=1.4e-23 Score=236.63 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=104.6
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HcCCCeeecCCCCCCCchHHHHHHHHHHHcCCC-ccccCHHHHHHH
Q 007761 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK-RVELSRDEFTKR 169 (590)
Q Consensus 92 f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r-~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~-~~~~~~e~f~~~ 169 (590)
+++ +| |++++.+||||||++|..|+++||++ +.||+|.+++|+|++|.+ +.+.|++.|.+ +.
T Consensus 63 ~Y~-CG-PTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDK----Ii~~A~~~g~~~~~---------- 126 (651)
T PTZ00399 63 WYT-CG-PTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDK----IIKRAREEKLSIFL---------- 126 (651)
T ss_pred EEE-eC-CCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchH----HHHHHHHhCCCcHH----------
Confidence 444 45 67779999999999999999999999 999999999999999988 55567788887 65
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccC
Q 007761 170 VWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235 (590)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~ 235 (590)
++++.+.+.+.+++.+|||..+ +. +...+|...+.+++++|+++|++|++++.|||+...
T Consensus 127 --el~~~~~~~f~~d~~~Lni~~p~~~----~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~ 187 (651)
T PTZ00399 127 --ELARKWEKEFFEDMKALNVRPPDVI----TRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA 187 (651)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCCccc----cCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchh
Confidence 5568899999999999999887 33 344689999999999999999999999988887654
No 54
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.90 E-value=1.7e-23 Score=200.24 Aligned_cols=128 Identities=38% Similarity=0.662 Sum_probs=99.5
Q ss_pred EEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccc---------------------------------cccCcE
Q 007761 253 LYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGMM 299 (590)
Q Consensus 253 ~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~---------------------------------~l~G~~ 299 (590)
-+.++|++.+.+..|.|+||||+||+|.++|+++|+|+..+ -+.|.+
T Consensus 9 G~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~~ 88 (185)
T PF13603_consen 9 GAEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGLY 88 (185)
T ss_dssp EEEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEEE
T ss_pred cEEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCCE
Confidence 46788999888889999999999999999999999987321 146889
Q ss_pred EEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecC----------------CCceecccC
Q 007761 300 AIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK----------------DGTLNEVAG 363 (590)
Q Consensus 300 ~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~----------------~G~~~~~~~ 363 (590)
++||++ ++++||+.++||.+++|||+||.||+|+++|+++|++||||+..++.. +|.+. +++
T Consensus 89 aihP~t-~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~ 166 (185)
T PF13603_consen 89 AIHPLT-GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSG 166 (185)
T ss_dssp EE-TTT-S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSG
T ss_pred EECCCC-CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCC
Confidence 999996 899999999999999999999999999999999999999999888742 36565 789
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 007761 364 LFRGLDRFEARKKLWSDLE 382 (590)
Q Consensus 364 ~~~G~~~~~a~~~i~~~L~ 382 (590)
+|+||+..+|+++|++.|+
T Consensus 167 ~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 167 EFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GGTTSBHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999985
No 55
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=6.1e-23 Score=226.74 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=108.8
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+.++| |+|.+.+||||+|++|..|+++||+++.||+|.+++|+|++|.+ +.+.|++.|+++. +
T Consensus 251 mYvCG-PTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDK----II~~A~e~G~sp~------------e 313 (699)
T PRK14535 251 MYVCG-MTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDK----IIARAAENGETIG------------E 313 (699)
T ss_pred EEecC-CcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchH----HHHHHHHcCCCHH------------H
Confidence 44678 99999999999999999999999999999999999999999988 4556778899887 4
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEc-ceeEEEeccC
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNL 235 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~-~~~v~w~p~~ 235 (590)
+++.+.+.+.+++++|||..+- +.|..++|...+++++++|.++|++|++ .+.||||+.+
T Consensus 314 la~~y~~~F~~d~~~LnI~~p~---~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~ 374 (699)
T PRK14535 314 LTARFIQAMHEDADALGVLRPD---IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE 374 (699)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc---EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc
Confidence 5688999999999999999882 2366779999999999999999999987 4589999765
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.87 E-value=5e-22 Score=195.76 Aligned_cols=98 Identities=22% Similarity=0.239 Sum_probs=79.0
Q ss_pred CCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCcc
Q 007761 80 YFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRV 159 (590)
Q Consensus 80 ~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~ 159 (590)
.|++.. +++.+++++. |+|+|++||||+|+++++|+++||+|++|++|++++|+|+||.+| +.+|++.|+++.
T Consensus 12 ~~~p~~-~~~~~~y~~g--pt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki----~~~A~~~g~~p~ 84 (213)
T cd00672 12 EFVPLN-PGLVTMYVCG--PTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKI----IKRAREEGLSWK 84 (213)
T ss_pred eeecCC-CCCceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHH----HHHHHHcCCCHH
Confidence 354433 2344555544 566689999999999999999999999999999999999999995 455667788876
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC-C-CCC
Q 007761 160 ELSRDEFTKRVWEWKEKYGGTITSQIKRLGASC-D-WTR 196 (590)
Q Consensus 160 ~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~-D-w~~ 196 (590)
++++.+.+.+++++++|||+. | |.+
T Consensus 85 ------------e~~~~~~~~f~~~~~~l~i~~~d~~~r 111 (213)
T cd00672 85 ------------EVADYYTKEFFEDMKALNVLPPDVVPR 111 (213)
T ss_pred ------------HHHHHHHHHHHHHHHHcCCCCCCccee
Confidence 567899999999999999988 5 444
No 57
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.84 E-value=2.4e-20 Score=184.32 Aligned_cols=124 Identities=19% Similarity=0.169 Sum_probs=107.0
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~ 170 (590)
+++|++.+|||||+|||||+|+++++|+++|++++.|++|.++.++|++|.++...++... .+
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-----------------~~ 63 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-----------------KW 63 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-----------------HH
Confidence 4789999999999999999999999999999999999999999999999999765553321 14
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCC
Q 007761 171 WEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQ 236 (590)
Q Consensus 171 ~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~ 236 (590)
+++++.+.+.+++++++|||.+| |.++ + .+...+.+++++|.++|++|+.++.+++|+.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~~d~~~~e---s--~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~ 125 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVRFDVWFGE---S--SYLGLMGKVVELLEELGLLYEEDGALWLDLTEF 125 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCceecch---h--hhhhHHHHHHHHHHHCCCEEEeCCcEEEechhh
Confidence 56788999999999999999999 7663 2 237779999999999999999999998876443
No 58
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.1e-20 Score=198.75 Aligned_cols=134 Identities=20% Similarity=0.223 Sum_probs=108.9
Q ss_pred CCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCc
Q 007761 79 GYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR 158 (590)
Q Consensus 79 ~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~ 158 (590)
..|.+...+.-+.| .+| |+|....||||+|++|..|++.||++..||.|.++.++.+ |+.++.+.|.+.|.+.
T Consensus 13 e~F~P~~~~~V~mY--vCG-pTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTD----IDDKIi~rA~~~g~~~ 85 (464)
T COG0215 13 EEFVPIDPGKVKMY--VCG-PTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITD----IDDKIINRAREEGLSI 85 (464)
T ss_pred ecccCCCCCeEEEE--ecC-CccCCccccccCcceehHHHHHHHHHHhCCeEEEEecccc----ccHHHHHHHHHhCCCH
Confidence 34555433222333 568 9999999999999999999999999999999999999988 4556777788888866
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC-CCCCccccCChhHHHHHHHHHHHHHhcCceEEc-ceeEEEeccC
Q 007761 159 VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASC-DWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNL 235 (590)
Q Consensus 159 ~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~-~~~v~w~p~~ 235 (590)
. +++++++.++.+++.+|||.- |.. +...+|...+.+++++|.++|++|.. ++.|||+.+.
T Consensus 86 ~------------ev~~~~i~~f~~D~~aL~v~~p~~~----PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~ 148 (464)
T COG0215 86 R------------EVAERYIAAFFEDMDALNVLPPDIE----PRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK 148 (464)
T ss_pred H------------HHHHHHHHHHHHHHHHhCCCCCccc----CcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEeccc
Confidence 5 567899999999999999953 421 34457899999999999999999998 6899998654
No 59
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.82 E-value=4.2e-20 Score=187.62 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=96.7
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
-++| |++...+||||+|+++..|++.||++..||+|.++.++.+. +.++.+.|++.|+++. +.
T Consensus 12 Y~CG-PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDi----DDKii~~A~~~g~~~~------------el 74 (300)
T PF01406_consen 12 YVCG-PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDI----DDKIIKRAREEGVSPQ------------EL 74 (300)
T ss_dssp EEEE-EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-S----SHHHHHHHHHTTS-HH------------HH
T ss_pred EcCC-CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEecccc----chHHHHHHHhccCCHH------------HH
Confidence 3568 99999999999999999999999999999999999998885 4457777889998876 44
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcc-eeEEEecc
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS-YMVNWSPN 234 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~-~~v~w~p~ 234 (590)
++.+.+++.++|++|||.-.- ..+...++...+.+++++|.++|++|+.. +.|||+..
T Consensus 75 a~~y~~~f~~dm~~Lnv~~p~---~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 75 ARRYEEEFFEDMKALNVLPPD---HYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHHHHHHHHTT----S---EEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHHHHHHHHcCCCCCc---cccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 688999999999999998752 22455689999999999999999999999 99998764
No 60
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.77 E-value=3.2e-18 Score=190.01 Aligned_cols=146 Identities=20% Similarity=0.241 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHH
Q 007761 68 EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147 (590)
Q Consensus 68 E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~v 147 (590)
.+.+.+.=+.+..|+.....++++++|+.++|||||++||||+|+++++|+++|++++.||+|.++.++|++|.++...+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a 168 (507)
T PRK01611 89 AELVLAILEAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLI 168 (507)
T ss_pred HHHHHHHHhchhhcCCCcCCCCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHH
Confidence 33344443334578765555678899999999999999999999999999999999999999999999999999865544
Q ss_pred HHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceE-Ec
Q 007761 148 EKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIY-QG 225 (590)
Q Consensus 148 e~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY-~~ 225 (590)
... +. ...++++.+.+.++++|++|||.+| |.+ +.+..+...+.+++++|.++|++| +.
T Consensus 169 ~~~----~~------------~~~~~~~~~~~~~~~~l~~LgI~~D~~~~---es~~~~~~~~~~~~~~L~~~G~~y~~~ 229 (507)
T PRK01611 169 ASL----EL------------LWRKAVDISLDEIKEDLDRLGVHFDVWFS---ESELYYNGKVDEVVEDLKEKGLLYVES 229 (507)
T ss_pred HHH----HH------------HHHHHHHHHHHHHHHHHHHcCCeeeEEee---cCcchhcchHHHHHHHHHHCCCEEEee
Confidence 322 11 2235678899999999999999999 765 444445567999999999999999 88
Q ss_pred ceeEEEe
Q 007761 226 SYMVNWS 232 (590)
Q Consensus 226 ~~~v~w~ 232 (590)
++.++++
T Consensus 230 ~Ga~~~~ 236 (507)
T PRK01611 230 DGALWVR 236 (507)
T ss_pred CCcEEEE
Confidence 8877654
No 61
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.77 E-value=4.4e-18 Score=178.78 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--------chHHHHHHHHHHHcCCCcccc
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVEL 161 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~G--------l~ie~~ve~~~~~~g~~~~~~ 161 (590)
++|+|++|+ +|||.+||||++.++.+|+++|++|++|++|.+++|+|+|| +|. ..++..|.....+
T Consensus 19 ~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~-----~~~~~~G~pi~~i 92 (353)
T cd00674 19 EKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPE-----SYEQYIGMPLSSV 92 (353)
T ss_pred CeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhh-----HHHHhcCccchhc
Confidence 579999996 59999999999999999999999999999999999999994 432 1344456665544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCCh-hHHHHHHHHHHHHHhcCceEEc
Q 007761 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDE-QLSRAVVEAFIRLHEKGLIYQG 225 (590)
Q Consensus 162 ~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~-~~~~~v~~~f~~L~~kG~iY~~ 225 (590)
+++. ..|.+|++.+...+++.|.+|||++||.+ +++. ......+.++..|.+++.|.+-
T Consensus 93 p~p~--g~~~~~~d~~~~~f~~~l~~lgi~~d~~~---~T~~y~~g~~~~~i~~~L~~~~~I~~i 152 (353)
T cd00674 93 PDPF--GCCESYAEHFERPFEESLEKLGIEVEFIS---QSQMYKSGLYDENILIALEKRDEIMAI 152 (353)
T ss_pred hhhc--CCCHHHHHHHHHHHHHHHHHcCCeeeeee---cCCchhhchHHHHHHHHHHHCChHHHH
Confidence 4322 23447889999999999999999999655 3433 2335678888899999888653
No 62
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.3e-16 Score=167.82 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=97.5
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHH-HcCCCeeecCCCCCCCchHHHHHHHHHHH--cCCCccccCHHHHHHHHH
Q 007761 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWLPGTDHAGIATQLVVEKMLAA--EGIKRVELSRDEFTKRVW 171 (590)
Q Consensus 95 ~~~pP~pnG~LHiGH~r~~vl~DilaR~~r-~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~--~g~~~~~~~~e~f~~~~~ 171 (590)
++| |+++..-||||||+||-.||+.|+++ ..||+|.+++++.+- +.++.+.|++ .+..+..+ -+.+
T Consensus 60 ~CG-pTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDV----DDKII~RAr~~~m~e~~~~l-----~~~F- 128 (586)
T KOG2007|consen 60 ICG-PTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDV----DDKIIKRARKEEMGEKPLSL-----SERF- 128 (586)
T ss_pred Eec-CcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccch----hHHHHHHhhhhhhccchhhH-----HHHH-
Confidence 457 99999999999999999999999999 999999999999884 4445555541 22233211 1111
Q ss_pred HHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccC
Q 007761 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235 (590)
Q Consensus 172 ~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~ 235 (590)
.+|.+.+.++|.+|++... ...|.-++|...+..++++++++|++|..++.||||...
T Consensus 129 ---~~~e~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k 186 (586)
T KOG2007|consen 129 ---CYYEEEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK 186 (586)
T ss_pred ---HHHHHHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc
Confidence 2566789999999999765 223667789999999999999999999999999998643
No 63
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.67 E-value=3.9e-16 Score=172.68 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=90.4
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--------chHHHHHHHHHHHcCCCcccc
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAAEGIKRVEL 161 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~G--------l~ie~~ve~~~~~~g~~~~~~ 161 (590)
+.++|++|+ +|||.+||||++.++.+|+++|++|++|++|.+++|+|+|| +|.+ +..++..|.+...+
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~---~~~~~~~G~pl~~~ 98 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQ---EMLEEYLGKPLTEI 98 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCch---HHHHHhcCcccccC
Confidence 359999995 79999999999999999999999999999999999999998 4532 12334456654333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHH-HHHHHHHHHHHhcCceEE
Q 007761 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLS-RAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 162 ~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~-~~v~~~f~~L~~kG~iY~ 224 (590)
.+. +-. +..|++.+...+++.|.++||.+|+.+ +++.... ...+.+...|.+++.|.+
T Consensus 99 p~p-~G~-~~~~~~~~~~~~~~~~~~~gi~~d~~~---~t~~y~~g~~~~~i~~~l~~~~~i~~ 157 (510)
T PRK00750 99 PDP-FGC-HESYAEHFNAPLREFLDRFGIEYEFIS---ATECYKSGRYDEAILTALENRDEIME 157 (510)
T ss_pred CCC-CCC-chHHHHHHHHHHHHHHHHcCCceEEEe---hhhhhccCchHHHHHHHHHhHHHHHH
Confidence 211 111 457889999999999999999999544 2222111 234555556666666644
No 64
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=3.2e-15 Score=166.09 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=116.5
Q ss_pred HHHHHHHHHHh-cCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHH
Q 007761 67 SEERIYNWWES-QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQL 145 (590)
Q Consensus 67 ~E~~~~~~W~~-~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~ 145 (590)
..+.+++...+ .+.|+......+++++|++.+|||+|||||||+||+++||+|+|.+++.||+|.....+++.|.++..
T Consensus 93 ~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~ 172 (577)
T COG0018 93 LAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGM 172 (577)
T ss_pred HHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHH
Confidence 57788888887 45565666667889999999999999999999999999999999999999999999988888876543
Q ss_pred HHHHHH-------------------------HHcCCCcc---ccCHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Q 007761 146 VVEKML-------------------------AAEGIKRV---ELSRDEFT---------KRVWEWKEKYGGTITSQIKRL 188 (590)
Q Consensus 146 ~ve~~~-------------------------~~~g~~~~---~~~~e~f~---------~~~~~~~~~~~~~~~~~l~~L 188 (590)
.+-... +....++. +..++.+. +..++.++.....++++|.+|
T Consensus 173 l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l 252 (577)
T COG0018 173 LALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRL 252 (577)
T ss_pred HHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221100 00001111 11111111 222335777888999999999
Q ss_pred CCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEE
Q 007761 189 GASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVN 230 (590)
Q Consensus 189 Gi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~ 230 (590)
||.|| |..+. +.-+...+.++++.|.++|++|+.++...
T Consensus 253 ~V~fD~~~~E~---e~~~~~~~~~vv~~L~~~~~~~e~~GA~~ 292 (577)
T COG0018 253 GVKFDVYDSEG---ESFYNGKVEKVVEDLEEKGLLYEDDGALV 292 (577)
T ss_pred Ccccceeeccc---hhhhcccHHHHHHHHHhcCCEeeeCCeEE
Confidence 99999 75432 22233368999999999999999776653
No 65
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.57 E-value=2.9e-14 Score=159.96 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=109.1
Q ss_pred cCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCC
Q 007761 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157 (590)
Q Consensus 78 ~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~ 157 (590)
+..|+....+++++++|++.+|||+|+|||||+|+.++||+++|.++..||+|.....+++.|.++-..+... .+.|..
T Consensus 101 ~~~~g~~~~~~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~-~~~~~~ 179 (562)
T PRK12451 101 KEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAY-KKWGNE 179 (562)
T ss_pred HhhcCCCccCCCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHH-HHhCCc
Confidence 4567755444578899999999999999999999999999999999999999999999999998766554332 222221
Q ss_pred --ccc-----c--------------------C----------HHHHHHHHHHH-HHHHHHHHHHHHHHhCCcCCCCCccc
Q 007761 158 --RVE-----L--------------------S----------RDEFTKRVWEW-KEKYGGTITSQIKRLGASCDWTRERF 199 (590)
Q Consensus 158 --~~~-----~--------------------~----------~e~f~~~~~~~-~~~~~~~~~~~l~~LGi~~Dw~~~~~ 199 (590)
+.+ + . +++.. .+|++ ++...+.++++|.+|||.|||..
T Consensus 180 ~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~-~~w~~~~~~~l~~~~~~~~~l~V~fD~~~--- 255 (562)
T PRK12451 180 AVVKEDPIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAV-ELWNWFRHESLKEFSRIYELLGVEFTNFQ--- 255 (562)
T ss_pred cccccCchHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHH-HHHHHHHHHHHHHHHHHHHHcCCCceeec---
Confidence 010 0 0 01111 12333 56667889999999999999332
Q ss_pred cCChhHHHHHHHHHHHHHhcCceEEcceeEE
Q 007761 200 TLDEQLSRAVVEAFIRLHEKGLIYQGSYMVN 230 (590)
Q Consensus 200 T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~ 230 (590)
.++.|...+.+++++|.++|++|+.++.++
T Consensus 256 -~es~~~~~~~~v~~~L~~~g~~~e~dGa~~ 285 (562)
T PRK12451 256 -GEAFYNDLMEDFIGILEEHDLLEESEGALV 285 (562)
T ss_pred -chHhhhhhHHHHHHHHHHCCCEEecCCeEE
Confidence 233456667999999999999999988774
No 66
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.54 E-value=1.4e-14 Score=153.96 Aligned_cols=156 Identities=23% Similarity=0.268 Sum_probs=104.0
Q ss_pred HHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHH-
Q 007761 72 YNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKM- 150 (590)
Q Consensus 72 ~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~- 150 (590)
.+.-+++..| ....+++++++|++.+|||+|+|||||+|+.++||+|+|.++..||+|.....+++.|.++-..+...
T Consensus 3 ~~il~~~~~y-~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~ 81 (354)
T PF00750_consen 3 NEILEKGEEY-GSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYK 81 (354)
T ss_dssp HHHHHHGGGT-T--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHH
T ss_pred HHHHhcchhc-ccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHH
Confidence 3444566777 55556788999999999999999999999999999999999999999999999999998765432110
Q ss_pred --HH------------------------HcCC---CccccC---HHHHHH------HHH-HHHHHHHHHHHHHHHHhCCc
Q 007761 151 --LA------------------------AEGI---KRVELS---RDEFTK------RVW-EWKEKYGGTITSQIKRLGAS 191 (590)
Q Consensus 151 --~~------------------------~~g~---~~~~~~---~e~f~~------~~~-~~~~~~~~~~~~~l~~LGi~ 191 (590)
.. .... ...++. ++.+.+ .++ .|...+.+.++++|++|++.
T Consensus 82 ~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~ 161 (354)
T PF00750_consen 82 KFGDEELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIR 161 (354)
T ss_dssp HHHHHHTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT--
T ss_pred hhhhhhhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 000110 111111 022 23444778899999999999
Q ss_pred CC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEE
Q 007761 192 CD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNW 231 (590)
Q Consensus 192 ~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w 231 (590)
+| |..| .+..+...+.+++++|.++|++|+.++.+..
T Consensus 162 fDv~~~E---~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i 199 (354)
T PF00750_consen 162 FDVWFDE---SESFYSGKVDEVLERLKEKGLLYESDGALWI 199 (354)
T ss_dssp -SEEEEH---CHHHHTTHHHHHHHHHHCTTTEEEETTEEEE
T ss_pred hCcCccc---chhhhhhHHHHHHHHHHhCCcEEecCCcEEE
Confidence 99 7654 3334566789999999999999998887743
No 67
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.54 E-value=1.5e-13 Score=154.65 Aligned_cols=147 Identities=19% Similarity=0.235 Sum_probs=106.7
Q ss_pred hcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCC
Q 007761 77 SQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI 156 (590)
Q Consensus 77 ~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~ 156 (590)
....|+....+ +++++|++.+|||+|++||||+|+++++|+++|++++.||+|.....+.+.|.++-..+....+ .+.
T Consensus 100 ~~~~~g~~~~~-~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~-~~~ 177 (566)
T TIGR00456 100 QKEDYGSKKLK-NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEK-FGN 177 (566)
T ss_pred cccccCCCCCC-CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHH-hCC
Confidence 34668866544 6789999999999999999999999999999999999999999999888888776554432211 110
Q ss_pred C----ccc-----------------------------------cCHHHHHHHHHHH-HHHHHHHHHHHHHHhCCcCC-CC
Q 007761 157 K----RVE-----------------------------------LSRDEFTKRVWEW-KEKYGGTITSQIKRLGASCD-WT 195 (590)
Q Consensus 157 ~----~~~-----------------------------------~~~e~f~~~~~~~-~~~~~~~~~~~l~~LGi~~D-w~ 195 (590)
. +.+ .++++.. .+|++ ++...+.++++|++|||.|| |.
T Consensus 178 ~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~-~~w~~~~~~~l~~~~~~~~~l~V~fD~~~ 256 (566)
T TIGR00456 178 EKLNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAI-KLWKRLVEYSLEGIKETLARLNIHFDSFV 256 (566)
T ss_pred ccccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHcCCceeeee
Confidence 0 000 0111112 23433 56677889999999999999 76
Q ss_pred CccccCChhHHHHHHHHHHHHHhcCceEEcceeEE
Q 007761 196 RERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVN 230 (590)
Q Consensus 196 ~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~ 230 (590)
.|.... +...+.+++++|.++|++|++ +.++
T Consensus 257 ~E~e~~---~~~~~~~v~~~L~~~g~~~~~-Ga~~ 287 (566)
T TIGR00456 257 WEGESV---KNGMVPKVLEDLKEKGLVVED-GALW 287 (566)
T ss_pred cccccc---ccccHHHHHHHHHHCCCEEEc-CCEE
Confidence 543222 334588999999999999987 7663
No 68
>PLN02286 arginine-tRNA ligase
Probab=99.48 E-value=5.4e-13 Score=149.94 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHH
Q 007761 68 EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147 (590)
Q Consensus 68 E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~v 147 (590)
.+.+.+.-..+..|+. ...++++++|++.+|||+|+|||||+|++++||+|+|.++..||+|.....+++.|.++-..+
T Consensus 96 ~~~l~~~~~~~~~~g~-~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~ 174 (576)
T PLN02286 96 AKRIERMLVDGIDTWA-PTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLI 174 (576)
T ss_pred HHHHHHHHHcCcccCC-CCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHH
Confidence 3344444444444442 223457899999999999999999999999999999999999999999999999998776554
Q ss_pred HHHHHHcCCC--cccc-----------------CHHHHHHH-----------------HH-HHHHHHHHHHHHHHHHhCC
Q 007761 148 EKMLAAEGIK--RVEL-----------------SRDEFTKR-----------------VW-EWKEKYGGTITSQIKRLGA 190 (590)
Q Consensus 148 e~~~~~~g~~--~~~~-----------------~~e~f~~~-----------------~~-~~~~~~~~~~~~~l~~LGi 190 (590)
.......+.. +.+. ..+++.+. +| ..++.....+++.+.+|||
T Consensus 175 ~~~~~~~~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V 254 (576)
T PLN02286 175 EHLFEKFPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRV 254 (576)
T ss_pred HHHHHhcCcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4322211110 1100 00112221 22 2345566779999999999
Q ss_pred cCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeE
Q 007761 191 SCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (590)
Q Consensus 191 ~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v 229 (590)
.+|-. -++.|...+.+++++|.++|++|+.++.+
T Consensus 255 ~fd~~-----ges~y~~~~~~vi~~L~~~g~~~e~dGa~ 288 (576)
T PLN02286 255 ELEEK-----GESFYNPYIPGVIEELESKGLVVESDGAR 288 (576)
T ss_pred eeeec-----CchhhhhhHHHHHHHHHHCCCEEeeCCce
Confidence 99921 22235566799999999999999998876
No 69
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.32 E-value=3.6e-12 Score=118.16 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=60.5
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 007761 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (590)
Q Consensus 95 ~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~ 174 (590)
+.+.|||||++||||+|+++++|+++|++|++|++|.++.|+|++|.++. ..+.+.+..+. +++
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~----~~a~~~~~~~~------------~~~ 65 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIG----DPANKKGENAK------------AFV 65 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHH----HHHHhcCCCHH------------HHH
Confidence 45669999999999999999999999999999999999999999998853 34455566665 344
Q ss_pred HHHHHHHHHHHH
Q 007761 175 EKYGGTITSQIK 186 (590)
Q Consensus 175 ~~~~~~~~~~l~ 186 (590)
+.+.+.++++++
T Consensus 66 ~~~~~~~~~~~~ 77 (143)
T cd00802 66 ERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 70
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.03 E-value=4.5e-10 Score=124.04 Aligned_cols=143 Identities=13% Similarity=0.144 Sum_probs=92.5
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCC--------CchHHHHHHHHHHHcCCCcccc
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA--------GIATQLVVEKMLAAEGIKRVEL 161 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~--------Gl~ie~~ve~~~~~~g~~~~~~ 161 (590)
++++|++|.+ |||.+||||++..+.+|+++|++|++|++|.+++|+|++ ++| +...+-.|.....+
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-----~~~~~ylG~Pl~~v 91 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-----EELETYLGMPLTRI 91 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-----HHHHHhCCCcceec
Confidence 3799999977 999999999999999999999999999999999999998 233 11111124332222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCCh-hHHHHHHHHHHHHHh--------cCceEEcc-ee-EE
Q 007761 162 SRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDE-QLSRAVVEAFIRLHE--------KGLIYQGS-YM-VN 230 (590)
Q Consensus 162 ~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~-~~~~~v~~~f~~L~~--------kG~iY~~~-~~-v~ 230 (590)
.+. |- .+..|++.+...+.+.|..||+.+++.+..-.+.+ .|.+.+..++++-.+ .|-=.+.+ .| ..
T Consensus 92 pdp-~g-~~~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~p 169 (515)
T TIGR00467 92 PDP-EG-CKTSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISV 169 (515)
T ss_pred CCC-CC-CcHHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeee
Confidence 110 00 12478899999999999999999886654333333 243344333332111 11101111 11 23
Q ss_pred EeccCCcccC
Q 007761 231 WSPNLQTAVS 240 (590)
Q Consensus 231 w~p~~~t~ls 240 (590)
.|++|+..+.
T Consensus 170 ic~~cGrv~~ 179 (515)
T TIGR00467 170 FCENCGRDTT 179 (515)
T ss_pred ecCCcCccCc
Confidence 6889988876
No 71
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.72 E-value=3.2e-08 Score=98.88 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=71.3
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 007761 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (590)
Q Consensus 95 ~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~ 174 (590)
+-.+|.|||.|||||+|++++.++++| ++++.++.-+|+...+.. + ..
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~------------~---------------~~ 51 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK------------R---------------PD 51 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc------------c---------------ch
Confidence 344599999999999999999999999 577777777777532210 0 11
Q ss_pred HHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 175 ~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
..+.+.|.++|+.||+. |+.. ...+++.+...++.++|.++|++|.
T Consensus 52 ~~~~~~i~~dL~wLGl~--~d~~--~~qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 52 PEAYDMIPEDLEWLGVK--WDEV--VIASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHHHcCCC--CCCc--cchhccHHHHHHHHHHHHHcCCccc
Confidence 34455699999999994 5443 4555677788999999999999997
No 72
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.57 E-value=2.1e-07 Score=103.56 Aligned_cols=96 Identities=25% Similarity=0.264 Sum_probs=71.9
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.+|+|||+|||||+|++++.+.+|| +|...++.-+|+..-.+ ...
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~-------------~R~------------- 150 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT-------------KRP------------- 150 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc-------------ccc-------------
Confidence 44556699999999999999999999999 45556666666643211 000
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
...+.+.|.++|+.||+..| .. +..+++.+...+..++|.++|++|.
T Consensus 151 -~~e~~~~I~edL~wLGl~wD--~~--~~qSdr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 151 -DPEAYDMILEDLKWLGVKWD--EV--VIQSDRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred -hHHHHHHHHHHHHHcCCCCC--Cc--cCcccCHHHHHHHHHHHHHcCCCcc
Confidence 13455789999999998544 33 4566788889999999999999996
No 73
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=8.8e-07 Score=94.68 Aligned_cols=163 Identities=15% Similarity=0.233 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC-----------
Q 007761 66 TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP----------- 134 (590)
Q Consensus 66 ~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~----------- 134 (590)
-++.-++..|+....|+......+++.+|++.+||.+.+.|+||.|+.+++-.+++..+..|++|..+-
T Consensus 86 ~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgl 165 (567)
T KOG1195|consen 86 LIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGL 165 (567)
T ss_pred HHHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhH
Confidence 468888999999999998866678999999999999999999999999999999999999999999953
Q ss_pred ---CCCCCCc-------hHHHHHHHHH-----HHcCCCccccCHHHHHH---------HHHH-HHHHHHHHHHHHHHHhC
Q 007761 135 ---GTDHAGI-------ATQLVVEKML-----AAEGIKRVELSRDEFTK---------RVWE-WKEKYGGTITSQIKRLG 189 (590)
Q Consensus 135 ---G~D~~Gl-------~ie~~ve~~~-----~~~g~~~~~~~~e~f~~---------~~~~-~~~~~~~~~~~~l~~LG 189 (590)
|+...|. ||+...+... ++...+..+..++-|.. ..|. +.+.-+....+.+.|||
T Consensus 166 l~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~ 245 (567)
T KOG1195|consen 166 LALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLN 245 (567)
T ss_pred HhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhc
Confidence 3334443 3433222111 11111111222222211 1222 34555667788899999
Q ss_pred CcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEe
Q 007761 190 ASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWS 232 (590)
Q Consensus 190 i~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~ 232 (590)
+.|| |.-| +.-+.+..+.+...+.++|++-+.++....+
T Consensus 246 v~FD~y~gE----Sqv~~e~~~~~~d~~rs~~l~~e~dG~~vid 285 (567)
T KOG1195|consen 246 VKFDEYSGE----SQVSNEKMQEALDLLRSANLTEEIDGTIVID 285 (567)
T ss_pred eeeeeccch----HHHHHHHHHHHHHHHHhcCCcccCCCcEEEE
Confidence 9999 5432 1246678899999999999888888777554
No 74
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.56 E-value=1.9e-07 Score=103.66 Aligned_cols=95 Identities=23% Similarity=0.261 Sum_probs=72.9
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 007761 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (590)
Q Consensus 92 f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~ 171 (590)
-+++-.||.|||+|||||++++++.+.+|| .|...++.-+|+.--+ ..
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp~---------------R~------------ 140 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDPR---------------RV------------ 140 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCcc---------------cc------------
Confidence 366677799999999999999999999997 2344555555664211 11
Q ss_pred HHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 172 EWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 172 ~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
..++.+.|.++|+.||+..| . .+..++|.+...++.++|.++|++|.
T Consensus 141 --~~e~~~~I~edL~wLGi~~d--~--~~~qSd~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 141 --KPEAYDMILEDLDWLGVKGD--E--VVYQSDRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred --cHHHHHHHHHHHHHcCCCCC--c--cccccccHHHHHHHHHHHHHcCCcee
Confidence 13577889999999999855 3 25667788889999999999999996
No 75
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.49 E-value=2.8e-07 Score=100.12 Aligned_cols=92 Identities=25% Similarity=0.318 Sum_probs=67.3
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
.+-.+|.|||.|||||+|++++.-.+|| .+.-.++.-+|+.... ..
T Consensus 4 r~RFAPSPTG~lHiG~artAL~n~l~Ar-----~~gG~fiLRIEDTD~~-----------------------------Rs 49 (445)
T PRK12558 4 ITRFAPSPTGYLHVGNARTALLNWLYAR-----KHGGKFILRIDDTDLE-----------------------------RS 49 (445)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHH-----HhCCEEEEEeccCCcc-----------------------------cc
Confidence 4445699999999999999998777776 3334444444553211 11
Q ss_pred HHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 174 KEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
++.+.+.|+++|++||+.+| |. .+++....+.+++++|.++|++|+
T Consensus 50 ~~~~~~~I~e~L~wLGI~~De~y-----~QSer~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 50 KQEYADAIAEDLKWLGINWDRTF-----RQSDRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred hHHHHHHHHHHHHHcCCCCCccc-----cHHHHHHHHHHHHHHHHHCCCEEE
Confidence 25678889999999999988 43 344555678999999999999995
No 76
>PLN02907 glutamate-tRNA ligase
Probab=98.36 E-value=1.7e-06 Score=99.46 Aligned_cols=109 Identities=25% Similarity=0.384 Sum_probs=78.1
Q ss_pred cCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCC
Q 007761 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157 (590)
Q Consensus 78 ~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~ 157 (590)
.+.|+.......+.=+++-.||.|||.||||||+++++...+|| +..|.-+++ +|+..
T Consensus 199 ~~~~~~~L~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---~eDTd----------------- 256 (722)
T PLN02907 199 KGSFEVDLPGAEEGKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR---FDDTN----------------- 256 (722)
T ss_pred cccccccCccCCCCceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCCC-----------------
Confidence 34555444332223366777799999999999999999999998 455654444 34432
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 158 ~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
+... ..++.+.|.++|+.||+..| .. ++.+++.+...+...+|+++|++|.
T Consensus 257 p~r~------------~~e~~~~I~~dl~wLG~~~d--~~--~~qS~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 257 PSKE------------SDEFVENILKDIETLGIKYD--AV--TYTSDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred CCcC------------ChHHHHHHHHHHHHcCCCCC--Cc--ccccccHHHHHHHHHHHHHcCCeee
Confidence 1110 14678889999999998765 33 4556777888999999999999996
No 77
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.28 E-value=3.4e-06 Score=84.22 Aligned_cols=93 Identities=27% Similarity=0.330 Sum_probs=68.9
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
++-.+|.|||+||+||++++++...+||- ..|.=+++ +|+...+ + .
T Consensus 3 ~~RFAPsPtG~lHlG~~~~al~~~l~Ar~--~~G~~iLR---ieDtD~~---------------R--------------~ 48 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAILLNFGYAKK--YGGRCNLR---FDDTNPE---------------K--------------E 48 (238)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ecCCCCc---------------c--------------c
Confidence 45566999999999999999999999874 45543333 3443211 0 1
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
...+.+.|.++|+.||+..| .. +..+++.+.-.++..+|.++|++|.
T Consensus 49 ~~~~~~~I~~dL~wlGl~wD--~~--~~QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 49 EEEYVDSIKEDVKWLGIKPY--KV--TYASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred chHHHHHHHHHHHHcCCCCC--Cc--eecccCHHHHHHHHHHHHHcCCeec
Confidence 24567789999999998766 32 4455667778999999999999999
No 78
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.27 E-value=4.2e-06 Score=93.25 Aligned_cols=94 Identities=28% Similarity=0.462 Sum_probs=70.7
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.||.|||.|||||++++++...+|| ...|.-+++ +|+.- +..
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG~~iLR---iEDTD-----------------p~R------------ 98 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLAD--KYKGKLVFR---FDDTN-----------------PSK------------ 98 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---EcCCC-----------------Ccc------------
Confidence 56677799999999999999999999998 345644444 34432 111
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIY 223 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY 223 (590)
...++.+.|.++|+.||+. |+.. .++.+++.+...++..+|.++|++|
T Consensus 99 ~~~e~~d~IleDL~WLGl~--wDe~-~~~QSdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGVS--WDVG-PTYSSDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred cCHHHHHHHHHHHHHCCCC--CCCc-eeeccccHHHHHHHHHHHHHcCCEE
Confidence 0146788999999999985 5431 2456678888999999999999999
No 79
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.27 E-value=2.9e-06 Score=86.73 Aligned_cols=93 Identities=22% Similarity=0.217 Sum_probs=67.6
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 007761 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (590)
Q Consensus 95 ~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~ 174 (590)
+-..|.|||.|||||+|++++...+|| +..|.=++++ |+.... + ..
T Consensus 3 ~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRi---EDtD~~---------------R--------------~~ 48 (272)
T TIGR03838 3 GRFAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRI---EDLDPP---------------R--------------EV 48 (272)
T ss_pred eeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEe---CcCCCC---------------C--------------CC
Confidence 334699999999999999999999999 4566555554 332111 0 01
Q ss_pred HHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 175 ~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
.++.+.|.++|+.||+..| ... ...+++.+.-.++.++|.++|++|.
T Consensus 49 ~~~~~~I~~dL~wLGl~wD--e~~-~~QS~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 49 PGAADDILRTLEAYGLHWD--GEV-VYQSQRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred hHHHHHHHHHHHHcCCCCC--CCe-eeeeCCHHHHHHHHHHHHHcCCEEe
Confidence 4567789999999998655 321 2344566778899999999999995
No 80
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.27 E-value=3.2e-06 Score=93.11 Aligned_cols=95 Identities=27% Similarity=0.409 Sum_probs=71.9
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.+|.|||.||||||+++++...+|| ...|.-+++ +|+.- +..
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG~~iLR---iEDTD-----------------p~R------------ 57 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILR---FDDTN-----------------PSK------------ 57 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ECCCC-----------------CCc------------
Confidence 56677799999999999999999999998 345644444 34432 111
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEc
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~ 225 (590)
...++.+.|.++|+.||+..| .. ++.+++.+...+...+|.++|++|.-
T Consensus 58 ~~~e~~~~I~~dL~WLGl~wD--~~--~~qSdr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKPD--SV--SFTSDYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred cchHHHHHHHHHHHHhCCCCC--CC--ccccccHHHHHHHHHHHHHcCCeEec
Confidence 124678889999999998755 33 45567778889999999999999963
No 81
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=9.3e-06 Score=85.22 Aligned_cols=146 Identities=18% Similarity=0.315 Sum_probs=97.7
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC----chHHHHHHHH-------------
Q 007761 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG----IATQLVVEKM------------- 150 (590)
Q Consensus 88 ~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~G----l~ie~~ve~~------------- 150 (590)
..|+.++.+.+||.-..+|+||.|+.++||.++|.+...|++|++.--.-+-| +=|....++.
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDL 265 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDL 265 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhH
Confidence 36789999999999999999999999999999999999999999975443433 3332222210
Q ss_pred --HHHcCCCccccCHHHHHHHHHH---------------H---HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHH
Q 007761 151 --LAAEGIKRVELSRDEFTKRVWE---------------W---KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (590)
Q Consensus 151 --~~~~g~~~~~~~~e~f~~~~~~---------------~---~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~ 210 (590)
.-++.+.+.+ .+|+|.+++-+ | ++--.+.+..-+++|.|+.-= --++-|...+.
T Consensus 266 QvFYkeSKkrFD-~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e-----~GESFYq~~m~ 339 (656)
T KOG4426|consen 266 QVFYKESKKRFD-EDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKE-----RGESFYQDRMA 339 (656)
T ss_pred HHHHHHHHhccC-cCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhh-----cchhhhhhHHH
Confidence 0011111111 13556554322 2 233334567778888887641 23445777899
Q ss_pred HHHHHHHhcCceEEcc-eeEEEeccCCccc
Q 007761 211 EAFIRLHEKGLIYQGS-YMVNWSPNLQTAV 239 (590)
Q Consensus 211 ~~f~~L~~kG~iY~~~-~~v~w~p~~~t~l 239 (590)
++++.|..+|++.+.+ +.+.|-+.|.-+|
T Consensus 340 ~vveel~~kglvee~~Gr~i~f~~g~~IPL 369 (656)
T KOG4426|consen 340 EVVEELKSKGLVEEDDGRRIMFPEGCDIPL 369 (656)
T ss_pred HHHHHHhcCCceeecCCceEeccCCCCcce
Confidence 9999999999999876 4455766665544
No 82
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.23 E-value=4.1e-06 Score=92.43 Aligned_cols=95 Identities=23% Similarity=0.296 Sum_probs=69.0
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
++-.+|.|||.|||||||++++...+|| +..|.-+++ +|+.. +.. -
T Consensus 2 ~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLR---ieDTd-----------------~~r------------~ 47 (522)
T TIGR00440 2 HTRFPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLR---FDDTN-----------------PVK------------E 47 (522)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---EcCCC-----------------ccc------------C
Confidence 4556799999999999999999999998 445644444 35432 110 0
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEc
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 225 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~ 225 (590)
..++.+.|.++|+.||+..| ... +..+++.....+...+|+++|++|.-
T Consensus 48 ~~e~~~~I~~dL~wLG~~~d-~~~--~~qS~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 48 DPEYVESIKRDVEWLGFKWE-GKI--RYSSDYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred ChHHHHHHHHHHHHcCCCCC-CCc--eEccccHHHHHHHHHHHHHcCCEEee
Confidence 14577889999999998765 222 34556666677888999999999963
No 83
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.22 E-value=2.8e-06 Score=88.98 Aligned_cols=94 Identities=24% Similarity=0.367 Sum_probs=63.5
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
++-.+|.|||+|||||+|++++...+|| +..|.=++++ |+...+ +.
T Consensus 3 ~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRi---eDtD~~---------------R~-------------- 48 (314)
T PF00749_consen 3 RTRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRI---EDTDPE---------------RC-------------- 48 (314)
T ss_dssp EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEE---ETSSTT---------------TC--------------
T ss_pred eEeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEec---cccccc---------------cc--------------
Confidence 3445699999999999999999999998 5566555544 442211 11
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
..++.+.|.++|+.||+..|. .. ...+++.+.-.++.++|.++|++|.
T Consensus 49 ~~~~~~~i~~~L~wlGl~~D~-~~--~~QS~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 49 RPEFYDAILEDLRWLGLEWDY-GP--YYQSDRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp HHHHHHHHHHHHHHHT---ST-CE--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred hhhHHHHHHhheeEEEEecCC-eE--EeHHHHHHHHHHHHHHHhhcCCCcc
Confidence 245677899999999987762 22 3456677788999999999999985
No 84
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.21 E-value=5.9e-06 Score=91.36 Aligned_cols=94 Identities=24% Similarity=0.242 Sum_probs=69.2
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.+|.|||.||||||+++++...+||. ..|.-+++ +|+.. +..
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLR---iEDTD-----------------p~r------------ 97 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLR---YDDTN-----------------PET------------ 97 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCCC-----------------ccc------------
Confidence 445666999999999999999999999984 45544444 34432 111
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
-...+.+.|.++|+.||+..| .. ++.+.|.+...+...+|+++|++|.
T Consensus 98 ~~~e~~~~I~~dL~wLGi~~D--~~--~~qS~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 98 EEQVYIDAIMEMVKWMGWKPD--WV--TFSSDYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred cChHHHHHHHHHHHHcCCCCC--CC--CcCchhHHHHHHHHHHHHHcCCEEE
Confidence 014577889999999998765 32 3456777777788899999999996
No 85
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.19 E-value=5.8e-06 Score=91.49 Aligned_cols=95 Identities=23% Similarity=0.295 Sum_probs=68.9
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.+|.|||.|||||||++++...+||- ..|.-+++ +|+.. +..
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR---ieDTd-----------------~~r------------ 75 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLR---FDDTN-----------------PEK------------ 75 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ECCCC-----------------CCc------------
Confidence 556677999999999999999999999983 45544444 35432 111
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
...++.+.|.++|+.||+..|- .. ++.+++.+...+...+|+++|++|.
T Consensus 76 ~~~e~~~~I~~dL~wLGi~~d~-~~--~~qS~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 76 EDQEYVDSIKEDVRWLGFDWSG-EL--RYASDYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred CChHHHHHHHHHHHHcCCCCCC-Cc--eeeecCHHHHHHHHHHHHHcCCEee
Confidence 0145778899999999987652 22 4455566666777789999999996
No 86
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=7.5e-06 Score=89.60 Aligned_cols=95 Identities=24% Similarity=0.259 Sum_probs=70.8
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
|++-.+|.|||.|||||||++++-..+||- ..|.-++++ |+. ++...
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~--~~G~fiLRi---EDT-----------------D~~R~----------- 56 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARK--YGGKFILRI---EDT-----------------DPERE----------- 56 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHH--hCCEEEEEe---cCC-----------------CCCCC-----------
Confidence 667777999999999999999999999983 456555543 332 11110
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
..++.+.|.++|+.||+..| .+ ..+.+++...-.+..++|+++|++|.
T Consensus 57 -~~e~~~~I~~~L~WLGl~wd--e~-~~~QS~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 57 -TPEAEDAILEDLEWLGLDWD--EG-PYYQSERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred -CHHHHHHHHHHHHhcCCCCC--Cc-eeehhhhHHHHHHHHHHHHHCCCeEE
Confidence 14567789999999997544 42 14556777888999999999999996
No 87
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.10 E-value=7.8e-06 Score=94.15 Aligned_cols=95 Identities=24% Similarity=0.329 Sum_probs=71.3
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.||.|||.|||||++++++...+|| +..|.-+++ +|+.. +...
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G~~~LR---~eDTd-----------------~~r~----------- 78 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHLR---MDDTN-----------------PETE----------- 78 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCCCC-----------------CCcC-----------
Confidence 66777799999999999999999999997 345544433 45532 1110
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
..++.+.|.++|+.||+..| .. .++.++|.+...+...+|+++|++|.
T Consensus 79 -~~e~~~~I~~dl~wLG~~wd--~~-~~~qS~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 79 -DTEYVEAIKDDVRWLGFDWG--EH-LYYASDYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred -ChHHHHHHHHHHHHcCCCCC--CC-ceEeecCHHHHHHHHHHHHHcCCccc
Confidence 14577889999999998755 22 14556777888999999999999996
No 88
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.09 E-value=1.1e-05 Score=83.50 Aligned_cols=95 Identities=24% Similarity=0.246 Sum_probs=66.5
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-..|.|||.|||||++++++...+||- ..|.=+++ +|+...+ +
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~--~~G~~iLR---iEDtD~~---------------R-------------- 51 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDARA--HGGRWLLR---IEDIDPP---------------R-------------- 51 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEE---ECcCCCC---------------c--------------
Confidence 344556999999999999999999888873 23433333 3442111 1
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
....+.+.|.++|+.||+..| ... ...+++.+.-.++.++|.++|++|.
T Consensus 52 ~~~~~~~~I~~dL~wlGl~wD-e~~--~~QS~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 52 EVPGAADAILADLEWLGLHWD-GPV--LYQSQRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred cchHHHHHHHHHHHHCCCCCC-CCc--eEeeccHHHHHHHHHHHHHCCCcee
Confidence 124567789999999998655 122 2344566778999999999999995
No 89
>PLN02859 glutamine-tRNA ligase
Probab=98.03 E-value=2.1e-05 Score=89.91 Aligned_cols=94 Identities=22% Similarity=0.249 Sum_probs=67.3
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.||.|||.|||||++++++...+||. ..|.-+++ +|+.. +..
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~--~~G~~~LR---ieDTd-----------------p~r------------ 310 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGCCYLR---FDDTN-----------------PEA------------ 310 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ecCCC-----------------CCc------------
Confidence 556677999999999999999999999985 35544433 35432 111
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
-..++.+.|.++|+.||+. |... ++.++|.+...+...+|+++|++|.
T Consensus 311 ~~~e~~~~I~edL~WLG~~--~d~~--~~qSd~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 311 EKKEYIDHIEEIVEWMGWE--PFKI--TYTSDYFQELYELAVELIRRGHAYV 358 (788)
T ss_pred cchHHHHHHHHHHHHcCCC--CCCc--ccccHhHHHHHHHHHHHHHcCCeEe
Confidence 0246788899999999964 5443 4455566545566778999999996
No 90
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.03 E-value=1.9e-05 Score=78.67 Aligned_cols=90 Identities=23% Similarity=0.247 Sum_probs=64.2
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
++-.+|.|||+||+||+|++++...+||- ..|.=+++ +|+...+ + .
T Consensus 3 ~~RFAPsPtG~lHlG~~r~al~n~l~Ar~--~~G~~iLR---ieDtD~~---------------R--------------~ 48 (230)
T cd00418 3 VTRFAPSPTGYLHIGHARTALFNFAFARK--YGGKFILR---IEDTDPE---------------R--------------S 48 (230)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEE---eCcCCCC---------------C--------------C
Confidence 34456999999999999999999999884 35544444 3443211 1 1
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcC
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKG 220 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG 220 (590)
...+.+.|.++|+.||+..| .+ ....+++.+.-.+.+++|.++|
T Consensus 49 ~~~~~~~I~~dL~wlGl~wd--~~-~~~QS~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 49 RPEYVESILEDLKWLGLDWD--EG-PYRQSDRFDLYRAYAEELIKKG 92 (230)
T ss_pred ChHHHHHHHHHHHHcCCCCC--CC-eeehhcCHHHHHHHHHHHHHcC
Confidence 24577789999999998655 31 1344556677889999999999
No 91
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=1.6e-05 Score=85.45 Aligned_cols=99 Identities=21% Similarity=0.340 Sum_probs=72.9
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.||-|+|.||||||..+++---++ . -|+=..++-+|+.- | .+.
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa----~-~~~G~LIvRFDDTN-P----------------aKE----------- 247 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQYFA----Q-AYQGKLIVRFDDTN-P----------------AKE----------- 247 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHHHHH----H-hcCceEEEEecCCC-c----------------chh-----------
Confidence 3455569999999999999887643332 2 22334555667743 2 111
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMV 229 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v 229 (590)
.+++.+.|.+++..|||..| .+|+.++|...+.....+|++.|.+|-.+.+.
T Consensus 248 -~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 248 -NEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred -hHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 14677889999999999998 33777889999999999999999999877654
No 92
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.02 E-value=1.9e-05 Score=87.24 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=83.2
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+.+-.+|.|||.|||||+|++++.-.+||- ..|.-+++ +|+.... +
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~--~~G~fiLR---ieDtD~~---------------R-------------- 50 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFARH--HGGKFILR---IEDTDQE---------------R-------------- 50 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEE---eCcCCCC---------------C--------------
Confidence 445566999999999999999999888883 44543433 3432111 1
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCc-----c-ccCChhHHHHHHHHHHHHHhcCceEEc------------------cee
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRE-----R-FTLDEQLSRAVVEAFIRLHEKGLIYQG------------------SYM 228 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~-----~-~T~~~~~~~~v~~~f~~L~~kG~iY~~------------------~~~ 228 (590)
.+..+.+.|.++|+.||+..| .. | -...+++.+.-.+..++|.++|++|.- ..+
T Consensus 51 ~~~~~~~~i~~~L~wlGl~~D--e~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~ 128 (476)
T PRK01406 51 STEEAEEAILEGLKWLGLDWD--EGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPP 128 (476)
T ss_pred CChHHHHHHHHHHHHCCCCCC--CCCccCCCCceehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCC
Confidence 124567789999999998765 22 0 023344556778999999999999951 112
Q ss_pred EEEeccCCcccCCccccccccCCeEEEEEEEec
Q 007761 229 VNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVA 261 (590)
Q Consensus 229 v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~ 261 (590)
.|+..|. -++.+|+......|..+.+.|++.
T Consensus 129 -~y~~~cr-~~~~~~~~~~~~~g~~~~iR~k~p 159 (476)
T PRK01406 129 -RYDGRCR-DLTKEEVAARLAAGEPPVIRFKVP 159 (476)
T ss_pred -CCCcccc-CCCHHHHHHHHhCCCCeeEEEEcC
Confidence 2444443 345555543334454556666654
No 93
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.91 E-value=3.5e-05 Score=85.02 Aligned_cols=94 Identities=24% Similarity=0.270 Sum_probs=65.9
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
++-.+|.|||.|||||+|++++.-.+|| ...|.=+++ +|+.... + .
T Consensus 3 ~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLR---ieDtD~~---------------R--------------~ 48 (470)
T TIGR00464 3 RTRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILR---IEDTDLE---------------R--------------N 48 (470)
T ss_pred eEeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCCCc---------------c--------------C
Confidence 3445699999999999999999999988 445544444 3443211 1 1
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
...+.+.|.++|+.||+..| ..++ ..+++.+.-.++.++|.++|++|.
T Consensus 49 ~~~~~~~i~~~L~wlGl~~d-e~~~--~QS~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 49 IEEAEEAILEGLKWLGISWD-EGPY--YQSQRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred ChHHHHHHHHHHHHCCCCCC-CCee--ehhCCHHHHHHHHHHHHHcCCEEe
Confidence 24567789999999998655 1222 333455566889999999999994
No 94
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.89 E-value=4.4e-05 Score=82.81 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=65.0
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHH
Q 007761 97 PPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEK 176 (590)
Q Consensus 97 ~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~ 176 (590)
..|.|||.|||||+|++++.-.+|| ...|.=++++ |+.. +. ....+
T Consensus 4 FAPSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRi---EDTD-----------------~~------------R~~~e 49 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRI---EDTD-----------------KE------------RNIEG 49 (433)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEe---CcCC-----------------CC------------cCChH
Confidence 4599999999999999999999888 3455444443 3321 11 01245
Q ss_pred HHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 177 YGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 177 ~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
+.+.|.++|+.||+..| ..+ ..+++.+.-.++.++|.++|.+|.
T Consensus 50 ~~~~I~~~L~WlGl~wD--e~y--~QSeR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 50 KDKEILEILNLFGISWD--KLV--YQSENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred HHHHHHHHHHHcCCCCC--CCe--ehhccHHHHHHHHHHHHHcCCeee
Confidence 67789999999998655 443 334455667889999999999994
No 95
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.88 E-value=4.4e-05 Score=84.18 Aligned_cols=94 Identities=23% Similarity=0.315 Sum_probs=66.6
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
.+-..|.|||.|||||+|++++.-.+|| +..|.=++++ |+.. +. ..
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRI---EDTD-----------------~~------------R~ 51 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRI---EDTD-----------------KE------------RS 51 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEE---CCCC-----------------cc------------cc
Confidence 3455699999999999999999999998 4556555444 3321 10 11
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
...+.+.|.++|+.||+..| ...|+ .++..+.-.+..++|.++|++|.
T Consensus 52 ~~~~~~~i~~~L~WLGl~wD-e~py~--QSeR~~~Y~~~a~~Li~~G~AY~ 99 (513)
T PRK14895 52 TKEAVEAIFSGLKWLGLDWN-GEVIF--QSKRNNLYKEAALKLLQNGKAYY 99 (513)
T ss_pred ChHHHHHHHHHHHHcCCCCC-CCcee--EeCcHHHHHHHHHHHHHcCCeEE
Confidence 24567789999999998654 12332 33445567899999999999995
No 96
>PLN02627 glutamyl-tRNA synthetase
Probab=97.74 E-value=0.00012 Score=81.05 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=67.5
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+.+-..|.|||.|||||+|++++.-.+|| +..|.=++++ |+.. +. .
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRI---EDTD-----------------~~------------R 91 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRI---EDTD-----------------LA------------R 91 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEe---CcCC-----------------CC------------C
Confidence 44555599999999999999999999998 4556545444 3321 11 0
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCc------cc-cCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRE------RF-TLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~------~~-T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
.+..+.+.|.++|+.||+..| .. +- ...+++.+.-.++.++|.++|++|.
T Consensus 92 ~~~e~~~~I~~~L~WLGl~wD--egp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 92 STKESEEAVLRDLKWLGLDWD--EGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred CChHHHHHHHHHHHHcCCCCC--cCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeee
Confidence 124567789999999998655 21 11 1233455667899999999999995
No 97
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.68 E-value=0.00014 Score=73.12 Aligned_cols=91 Identities=21% Similarity=0.199 Sum_probs=61.8
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
++-.+|.|||.||+||++++++...++|- ..| .++.-+|+...+ +.
T Consensus 3 ~~RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G---~~ilRieDtd~~---------------r~-------------- 48 (239)
T cd00808 3 RTRFAPSPTGFLHIGGARTALFNYLFARK--HGG---KFILRIEDTDQE---------------RS-------------- 48 (239)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCC---eEEEEECcCCCC---------------CC--------------
Confidence 34456999999999999999999988883 345 333334442111 10
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCcc-------ccCChhHHHHHHHHHHHHHhcC
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRER-------FTLDEQLSRAVVEAFIRLHEKG 220 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~kG 220 (590)
...+.+.|.++|..||+..| ... ....+...+...++.++|.++|
T Consensus 49 ~~~~~~~i~~dL~wlGl~~d--~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 49 VPEAEEAILEALKWLGLDWD--EGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG 100 (239)
T ss_pred chHHHHHHHHHHHHcCCCCC--cCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC
Confidence 13567789999999998655 300 1233445667788899999998
No 98
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.65 E-value=1.3e-05 Score=84.30 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=78.8
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCc-h-HHHHHH-HHHHH-cCCCccccCH
Q 007761 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGI-A-TQLVVE-KMLAA-EGIKRVELSR 163 (590)
Q Consensus 88 ~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl-~-ie~~ve-~~~~~-~g~~~~~~~~ 163 (590)
+++.+++.+| -.|+|.+|||++|..+.+|+++|-++.+|++|.+++.+|+..- . +..-+. .++++ .|.....+.+
T Consensus 21 ~~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPd 99 (360)
T PF01921_consen 21 GKEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPD 99 (360)
T ss_dssp --SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-
T ss_pred CCccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCC
Confidence 4567999999 9999999999999999999999999999999999999998541 0 000000 00111 1222212211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCCh-hHHH----------HHHHHHHHHHhcCceEEcce-e-EE
Q 007761 164 DEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDE-QLSR----------AVVEAFIRLHEKGLIYQGSY-M-VN 230 (590)
Q Consensus 164 e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~-~~~~----------~v~~~f~~L~~kG~iY~~~~-~-v~ 230 (590)
-|- .+..|++.+...+.+.|..||+.+.+.+..-.+.+ .|.+ .+.+++.+-.... ...++ | ..
T Consensus 100 -P~G-~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~~~y~Pf~p 175 (360)
T PF01921_consen 100 -PFG-CHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RPETYSPFLP 175 (360)
T ss_dssp -TTS-SSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT----TT--SEEE
T ss_pred -CCC-CCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CCCCeeeeee
Confidence 010 12357889999999999999998885554333332 2333 3334444332222 22221 1 23
Q ss_pred EeccCCcccC
Q 007761 231 WSPNLQTAVS 240 (590)
Q Consensus 231 w~p~~~t~ls 240 (590)
.|++|++++.
T Consensus 176 iC~~cGri~t 185 (360)
T PF01921_consen 176 ICEKCGRIDT 185 (360)
T ss_dssp EETTTEE--E
T ss_pred eccccCCccc
Confidence 6888887554
No 99
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00021 Score=77.61 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=76.7
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--------chHHHHHHHHHHH-cCCCccc
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--------IATQLVVEKMLAA-EGIKRVE 160 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~G--------l~ie~~ve~~~~~-~g~~~~~ 160 (590)
..+++.+| -.|+|.+|||++|-.+.+|+++|-+|.+|++|.+++=+|+.. +|-+ +.+++ .|+...+
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~----~~~e~Ylg~Plt~ 93 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDP----EELEQYLGMPLTE 93 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCCh----HHHHHHcCCcccc
Confidence 68999999 999999999999999999999999999999999999998864 2211 22222 2544333
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCc
Q 007761 161 LSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 197 (590)
Q Consensus 161 ~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~ 197 (590)
+... | --|..|++.+...+.+-|..+|+.+.|.+.
T Consensus 94 IPdP-~-G~~~Sya~hf~~~f~~~l~~~Gi~~E~~s~ 128 (521)
T COG1384 94 IPDP-F-GCCDSYAEHFLRPFEEFLDEFGIEVEFVSA 128 (521)
T ss_pred CCCC-c-cccchHHHHHHHHHHHHHHhcCCceEEEEh
Confidence 3211 0 024467899999999999999998876553
No 100
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00044 Score=75.47 Aligned_cols=94 Identities=24% Similarity=0.303 Sum_probs=62.2
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
++|-.||-|||.|||||+-..-+-==+|++ +.|..-++ +|+. .|+..
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyLR---fDDT-----------------NPEkE----------- 295 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYLR---FDDT-----------------NPEKE----------- 295 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEEe---cCCC-----------------Ccchh-----------
Confidence 456777999999999998643332222222 22322211 2332 23211
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
.++|...|++.-..||.. .-..|++++|.....+.-.+|+++|++|.
T Consensus 296 -ee~yf~sI~e~V~WLG~~----P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 296 -EEEYFESIKEMVAWLGFE----PYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred -hHHHHHHHHHHHHHhCCC----ceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 156788899999999943 22349999998888899999999999995
No 101
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.012 Score=62.57 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=84.1
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Q 007761 96 MPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKE 175 (590)
Q Consensus 96 ~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~ 175 (590)
-.-|-|||.||+|-+|++..-=++|| ...|.-++++=-+|.-- .+.
T Consensus 37 RFAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~R--------------------------------~v~ 82 (524)
T KOG1149|consen 37 RFAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQKR--------------------------------LIR 82 (524)
T ss_pred eecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccccc--------------------------------ccc
Confidence 33499999999999999987655555 34455555554333310 011
Q ss_pred HHHHHHHHHHHHhCCcCCCCC----ccccCC-hhHHHHHHHHHHHHHhcCceEEc----------------ceeEE-Eec
Q 007761 176 KYGGTITSQIKRLGASCDWTR----ERFTLD-EQLSRAVVEAFIRLHEKGLIYQG----------------SYMVN-WSP 233 (590)
Q Consensus 176 ~~~~~~~~~l~~LGi~~Dw~~----~~~T~~-~~~~~~v~~~f~~L~~kG~iY~~----------------~~~v~-w~p 233 (590)
....++.++|..+|+..|=.. .+-.+. ++..+.-.+..++|.+.|.+|+- .+.+. |+-
T Consensus 83 gs~e~i~~~L~w~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~ 162 (524)
T KOG1149|consen 83 GSEEAIYEDLKWANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDR 162 (524)
T ss_pred chHHHHHHHHHhcCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccc
Confidence 123357788999998877111 111221 23344567788899999999962 22222 443
Q ss_pred cCCcccCCccccccccCCeEEEEEEEecC
Q 007761 234 NLQTAVSDLEVEYSEEPGTLYYIKYRVAG 262 (590)
Q Consensus 234 ~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~ 262 (590)
+| ..++++|++.....|+-+.+.|++..
T Consensus 163 kc-a~ls~~ei~~~lakg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 163 KC-ANLSDAEIKQKLAKGTPFTIRFRLPK 190 (524)
T ss_pred hh-cccCHHHHHHHHhcCCCeeEEEecCC
Confidence 33 45888999888888888888888764
No 102
>PLN02563 aminoacyl-tRNA ligase
Probab=95.41 E-value=0.029 Score=67.16 Aligned_cols=80 Identities=21% Similarity=0.434 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCcceeee--------------ccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceE
Q 007761 372 EARKKLWSDLEETGLAVKKEP--------------HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 437 (590)
Q Consensus 372 ~a~~~i~~~L~~~g~~~~~~~--------------~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~ 437 (590)
..-+.+...|-++|++.+.+. .+..+++|+|||.+++.+...||||+++++++++++.++. ..
T Consensus 212 ~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~--~~- 288 (963)
T PLN02563 212 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDD--LD- 288 (963)
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhh--cC-
Confidence 345567778888888765432 1223467999999999999999999999999999999974 44
Q ss_pred ecchHHHHHHHHHhcCC
Q 007761 438 MPERFEKIYNHWLSNIK 454 (590)
Q Consensus 438 ~P~~~~~~~~~~l~~l~ 454 (590)
.|++.++...+||.+-.
T Consensus 289 wp~~v~~~q~nwiG~s~ 305 (963)
T PLN02563 289 WPESIKEMQRNWIGRSE 305 (963)
T ss_pred CCHHHHHHHHHhccccc
Confidence 69999999999997543
No 103
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.35 E-value=0.023 Score=52.40 Aligned_cols=49 Identities=14% Similarity=0.048 Sum_probs=32.6
Q ss_pred ccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 540 ~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.|+++.|.||.. .+.....+.-.+....+ ...+.+|+++..+|+|||||
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks 142 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKS 142 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCC
Confidence 589999999986 22222222222222333 46677899998889999998
No 104
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=94.20 E-value=0.061 Score=63.91 Aligned_cols=80 Identities=31% Similarity=0.486 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCcceeee----------------ccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCc
Q 007761 372 EARKKLWSDLEETGLAVKKEP----------------HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 435 (590)
Q Consensus 372 ~a~~~i~~~L~~~g~~~~~~~----------------~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i 435 (590)
++-+.+...|-++|++...+. + ....+|||||.+++.+..+|||++++++++++++.++. .
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev-~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~--~ 206 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQV-DSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEE--L 206 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHH-hhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhh--h
Confidence 344556677888887544221 2 11258999999999999999999999999999999874 4
Q ss_pred eEecchHHHHHHHHHhcCC
Q 007761 436 TIMPERFEKIYNHWLSNIK 454 (590)
Q Consensus 436 ~~~P~~~~~~~~~~l~~l~ 454 (590)
.-.|++.++...+||..-.
T Consensus 207 ~~wp~~v~~~q~~wig~s~ 225 (842)
T TIGR00396 207 DHWPESVKEMQRNWIGKSE 225 (842)
T ss_pred ccccHHHHHHHHhcccccc
Confidence 5699999999999997543
No 105
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=92.43 E-value=0.26 Score=58.45 Aligned_cols=85 Identities=25% Similarity=0.430 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCCcceeee--------------ccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceE
Q 007761 372 EARKKLWSDLEETGLAVKKEP--------------HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 437 (590)
Q Consensus 372 ~a~~~i~~~L~~~g~~~~~~~--------------~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~ 437 (590)
++-..+...|-++|++...+. .+...++|+|||.+++.+.++|||++++++++++++.++. +.=
T Consensus 133 ~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~--~~~ 210 (805)
T PRK00390 133 KWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDK--LED 210 (805)
T ss_pred HHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHh--hcc
Confidence 445567778888988665332 1222468999999999999999999999999999999864 323
Q ss_pred ecchHHHHHHHHHhcCCCeee
Q 007761 438 MPERFEKIYNHWLSNIKDWCI 458 (590)
Q Consensus 438 ~P~~~~~~~~~~l~~l~DW~I 458 (590)
.|++.+..-.+||..-.-+.|
T Consensus 211 w~~~v~~~~~~wig~~~~~~i 231 (805)
T PRK00390 211 WPEKVKTMQRNWIGRSEGAEV 231 (805)
T ss_pred CcHHHHHHHHhhccccceEEE
Confidence 599999999999985544444
No 106
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.38 E-value=0.087 Score=61.54 Aligned_cols=78 Identities=27% Similarity=0.448 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcceeee--------------ccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCce-Eec
Q 007761 375 KKLWSDLEETGLAVKKEP--------------HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT-IMP 439 (590)
Q Consensus 375 ~~i~~~L~~~g~~~~~~~--------------~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~-~~P 439 (590)
+-+--.|.++|++.+.+- .+-..-.|||||.+|+.+-.+||||+++++.+.+++.++. .. ..|
T Consensus 138 QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~--l~~~wP 215 (814)
T COG0495 138 QWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDK--LATLWP 215 (814)
T ss_pred HHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhh--hccCCc
Confidence 345556778887655331 1222347899999999999999999999999999988763 44 589
Q ss_pred chHHHHHHHHHhcCC
Q 007761 440 ERFEKIYNHWLSNIK 454 (590)
Q Consensus 440 ~~~~~~~~~~l~~l~ 454 (590)
+..+..-.+||..-.
T Consensus 216 E~Vk~mq~nWIg~s~ 230 (814)
T COG0495 216 ETVKGMQRNWIGPSE 230 (814)
T ss_pred hhHHHHHHcCcCCCC
Confidence 999999999998533
No 107
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.71 E-value=0.068 Score=59.91 Aligned_cols=52 Identities=27% Similarity=0.539 Sum_probs=44.2
Q ss_pred cccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhc
Q 007761 398 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN 452 (590)
Q Consensus 398 p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~ 452 (590)
..+||||.+||.....||||+++++++++++.++ ...=.|+ .++.-.|||..
T Consensus 199 G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~--~L~~W~~-vk~mQrnWIG~ 250 (876)
T KOG0435|consen 199 GCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLE--TLPEWPE-VKDMQRNWIGR 250 (876)
T ss_pred CccccccchhhHHHHHHHHhhhhHHHHHHHHHHH--hhhhhhh-HHHHHHhhccc
Confidence 4789999999999999999999999999999987 3434565 77888888864
No 108
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.23 E-value=0.27 Score=50.53 Aligned_cols=47 Identities=13% Similarity=-0.065 Sum_probs=32.1
Q ss_pred ccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 540 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 540 ~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+|+.+.|.||... =+++-++--+ ..+.| -.+.|.++.+.+|+|||||
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~r~--~~~~~--~~l~~~ll~~l~G~KMSKS 199 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIRKL--GYKKV--VGLTTPLLTGLDGGKMSKS 199 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHHHh--CCCCc--EEEeeccccCCCCCcccCC
Confidence 5899999999843 2223233222 22334 4578999999999999998
No 109
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=90.21 E-value=0.37 Score=54.08 Aligned_cols=49 Identities=24% Similarity=0.267 Sum_probs=30.8
Q ss_pred ccEEEEeechhhHHHHHHHHhhccccCCCCCc-EEEEe---ceEEeCCCCccccC
Q 007761 540 TTMLETGHDILFFWVARMVMMGIEFTGSVPFS-HVYLH---GLIRDSQVKKCQKH 590 (590)
Q Consensus 540 ~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~-~v~~h---G~v~d~~G~KMSKS 590 (590)
.-++|.|.||.. .|.++....-.+ +..|.+ .++.| |+|+|++|+|||||
T Consensus 274 ~~i~V~g~~q~~-hf~~~~~~~~~l-g~~~~~~~~~~h~~~glv~~~~g~KMSkR 326 (507)
T PRK01611 274 RVIYVVGADHHG-HFKRLKAALKAL-GYDPDALEVLLHQMVGLVRGGEGVKMSTR 326 (507)
T ss_pred EEEEEECCChHH-HHHHHHHHHHHc-CCCcccceEEEEEEEEeeECCCCCcccCC
Confidence 337788888853 233333222222 333543 55666 99999999999997
No 110
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=88.88 E-value=0.36 Score=52.64 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=32.8
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+.+|+.+.|.||..- -..+=++-- +..+.| ..+++.++.+.+|.|||||
T Consensus 185 ~~~~iq~gG~DQ~~ni~~grdl~~r--~~~~~~--~~lt~PlL~g~dG~KMsKS 234 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMGRDLQRK--LEGEEQ--FGLTMPLLEGADGTKMGKS 234 (410)
T ss_pred CCCCEEEecHHHHHHHHHHHHHHHH--hCCCCc--eEeccCCccCCCCCccCCC
Confidence 478999999999743 222222222 223334 5567888889999999998
No 111
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=88.48 E-value=0.46 Score=50.34 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=33.9
Q ss_pred CCccEEEEeechh-hHHHHHHHHhhcc----ccCCCCCcEEE--EeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDIL-FFWVARMVMMGIE----FTGSVPFSHVY--LHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil-~~W~~~~~~~~~~----l~~~~Pf~~v~--~hG~v~d~~G~KMSKS 590 (590)
|.+|+...|.||. |.=++|-++..+. -....| ..++ .+-++...+|+|||||
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS 206 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKS 206 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCC
Confidence 5688999999998 4445555443321 012335 4444 4677778899999998
No 112
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.18 E-value=1.2 Score=47.78 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=30.6
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++++.+.+| --|+|.+||||.. ....+.++++ .|++|.+..+
T Consensus 64 ~~~~~iytG-~~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~i~Ia 105 (368)
T PRK12285 64 GKPFAVYTG-FMPSGPMHIGHKM---VFDELKWHQE-FGANVYIPIA 105 (368)
T ss_pred CCCeEEEEc-cCCCCCccHHHHH---HHHHHHHHHh-cCCCEEEEec
Confidence 567888788 7888999999964 2445555555 7888776644
No 113
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=87.64 E-value=0.78 Score=47.29 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=32.3
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+..|+.+.|.||.. .=..+-++.-+. ....| . .+++.++.+.+|.|||||
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n-~~~~p-~-~l~~p~l~~l~G~KMSKS 202 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFN-GFTIA-E-GLTIPLVTKLDGPKFGKS 202 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhC-CCCCC-e-EEeeccccCCCCCcCCCC
Confidence 45689999999973 333333332221 11234 3 345589999999999998
No 114
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=86.56 E-value=0.93 Score=47.03 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=34.0
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCC-ccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVK-KCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~-KMSKS 590 (590)
+-+|+.+.|.||... =+++-++-.+......|-...+++.++...+|. |||||
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS 202 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKS 202 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCcc
Confidence 456799999999853 333333332222122233566777799999999 99998
No 115
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.55 E-value=0.76 Score=50.08 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=34.0
Q ss_pred CCccEEEEeechh-hHHHHHHHHhhccc-----cCCCCCcEEEE--eceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDIL-FFWVARMVMMGIEF-----TGSVPFSHVYL--HGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil-~~W~~~~~~~~~~l-----~~~~Pf~~v~~--hG~v~d~~G~KMSKS 590 (590)
|-+|+...|.||. |.=++|-++..+.. ....| +.++. +..|++.+|+|||||
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS 206 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKS 206 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCC
Confidence 5688999999998 44455555433211 12345 44442 457888899999998
No 116
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=86.39 E-value=0.58 Score=51.04 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=32.8
Q ss_pred CCccEEEEeechhhHH-HHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~W-~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+.+|+.+.|.||..-. ..+-++-- +..+.+| .+...++.+.+|+|||||
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~r--~~~~~~~--~l~~plL~~~~G~KMsKS 236 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQRR--YGGKPQF--GLTMPLLTGLDGKKMGKS 236 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHHH--hCCCCeE--EEecCCcCCCCCCcccCC
Confidence 5899999999998422 22333322 2233333 356778889999999998
No 117
>PLN02486 aminoacyl-tRNA ligase
Probab=85.55 E-value=4.2 Score=43.98 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=28.8
Q ss_pred CCCCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 007761 88 GSDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (590)
Q Consensus 88 ~~k~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~ 133 (590)
++++|.+.+| --|+|. +||||.. ....+..+++..|..+...
T Consensus 70 ~~~~~~vYtG-~~PSg~~lHlGHlv---~~~~~~~lQ~~~~~~~~I~ 112 (383)
T PLN02486 70 KGEKFYLYTG-RGPSSEALHLGHLI---PFMFTKYLQDAFKVPLVIQ 112 (383)
T ss_pred cCCCeEEEeC-CCCCCccccHHHHH---HHHHHHHHHHhCCCeEEEE
Confidence 3678888889 899995 9999954 3444544454556655554
No 118
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=83.69 E-value=0.88 Score=48.93 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=33.2
Q ss_pred CCccEEEEeechh-hHHHHHHHHhhcc--ccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDIL-FFWVARMVMMGIE--FTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil-~~W~~~~~~~~~~--l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
|-+++...|.||. |+=++|-++-.+. ..-..| . .+.|-++...+|+|||||
T Consensus 202 ~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P-~-~l~~~~lpgL~G~KMSkS 255 (368)
T PRK12285 202 PKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP-S-STYHKFMPGLTGGKMSSS 255 (368)
T ss_pred CCceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc-h-hHhhhcccCCCCCcCCCC
Confidence 4577899999997 3445555543330 012234 3 344678889999999998
No 119
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=83.56 E-value=1.3 Score=46.81 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=34.7
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhccccCCCCCcEEEEeceEEeCCCC--ccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVK--KCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~--KMSKS 590 (590)
+.+|+...|.||.. .=+++-++-.+ +...| ..+.|.++.+.+|. |||||
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~~--n~~~p--~~l~~~~l~~L~g~~~KMSKS 218 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPKL--GYKKP--VCIHTPLLTGLDGGGIKMSKS 218 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHhc--CCCCc--eEEEcCccCCCCCCCCCCcCC
Confidence 56899999999984 44444444332 23344 44568899999998 99998
No 120
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=80.79 E-value=2.6 Score=43.59 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
--|||.|||||..+++. .+.++ +..|+++.+..+
T Consensus 6 ~~PTG~lHLG~~~~al~--~~~~l-Q~ag~~~~~~Ia 39 (280)
T cd00806 6 IQPSGSLHLGHYLGAFR--FWVWL-QEAGYELFFFIA 39 (280)
T ss_pred eCCCchhhHHHHHHHHH--HHHHH-HhCCCCEEEEec
Confidence 46899999999988544 23333 334888877643
No 121
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=80.72 E-value=1.3 Score=46.97 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=28.1
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++.+.+| --|||.+||||..+.+. .++....|+++.+..+
T Consensus 2 ~~~v~~G-~~PTG~~HlG~~l~~~~----~~~~~q~~~~~~i~Ia 41 (328)
T TIGR00233 2 KFRVLTG-IQPSGKMHLGHYLGAIQ----TKWLQQFGVELFICIA 41 (328)
T ss_pred CCEEEEe-eCCCcHhHHHHHHHHHH----HHHHHhCCCCEEEEee
Confidence 3455566 68899999999877654 3444467998877543
No 122
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.43 E-value=1.6 Score=46.23 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=34.7
Q ss_pred CCccEEEEeechh-hHHHHHHHHhhcccc----CCCCCcEEEE-e-ceEEeCCCC--ccccC
Q 007761 538 YPTTMLETGHDIL-FFWVARMVMMGIEFT----GSVPFSHVYL-H-GLIRDSQVK--KCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil-~~W~~~~~~~~~~l~----~~~Pf~~v~~-h-G~v~d~~G~--KMSKS 590 (590)
+.+|+...|.||. |.=++|-++--+... ...| +.++. | .++...+|. |||||
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS 197 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKS 197 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCC
Confidence 5689999999998 455556555433211 1356 55553 2 678888887 99998
No 123
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=80.37 E-value=4.4 Score=41.75 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 99 PNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 99 P~pnG-~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
--||| .||+||..+ -..+.+++ ..|+++.++.|
T Consensus 6 ~~PTg~~lHlGh~~~---l~~~~~lq-~~g~~~~~~I~ 39 (273)
T cd00395 6 IDPTADSLHIGHLIG---LLTFRRFQ-HAGHRPIFLIG 39 (273)
T ss_pred EcCCCCCccHHHHHH---HHHHHHHH-HCCCCEEEEEe
Confidence 35799 699999877 33344554 46999888655
No 124
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=80.01 E-value=1.8 Score=45.95 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhccc-cC----CCCCcEEEE-eceEEeCCC-CccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG----SVPFSHVYL-HGLIRDSQV-KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l-~~----~~Pf~~v~~-hG~v~d~~G-~KMSKS 590 (590)
|.+|+...|.||.. +=++|-++-.+.. .+ ..| +.++. |.+|.+.+| .|||||
T Consensus 141 ~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p-~~~~~~~~~i~~L~g~~KMSKS 200 (333)
T PRK12282 141 FKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP-EALLPEAGRLPGLDGKAKMSKS 200 (333)
T ss_pred hCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc-hhcccCCCcccCCCCCCcCCCC
Confidence 57899999999973 4455555533321 11 123 22322 557777777 899998
No 125
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=79.45 E-value=2.7 Score=45.51 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=33.2
Q ss_pred CCccEEEEeechh-hHHHHHHHHhhccccCCCCCcEEEEeceEEeC-CC-CccccC
Q 007761 538 YPTTMLETGHDIL-FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDS-QV-KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil-~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~-~G-~KMSKS 590 (590)
+.+|+...|.||- ++=++|-++-.+. ...+ ..++.|.++.+. +| +|||||
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~~--~~~~-~~~~~~~~lpgL~dg~~KMSKS 261 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKKK--IKKK-PIILSHHMLPGLLEGQEKMSKS 261 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHhC--CCCC-ceeecccccccCCCCCCCCCcC
Confidence 5689999999994 5555555554432 1112 234478889888 45 799998
No 126
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.10 E-value=1.5 Score=47.52 Aligned_cols=48 Identities=15% Similarity=-0.010 Sum_probs=33.8
Q ss_pred CccEEEEeechhhHHHHHHHHhhcccc-CCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILFFWVARMVMMGIEFT-GSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~W~~~~~~~~~~l~-~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-+|+.+.|.||- ...++..-+.-. +..+ .-.+++.++.+.+|.|||||
T Consensus 180 ~~dlq~GG~DQ~---~ni~~grdl~rr~g~~~-~~~lt~PLL~~ldG~KmgKs 228 (401)
T COG0162 180 NKDLQLGGSDQW---GNILAGRDLIRRLGQKK-VVGLTTPLLTGLDGKKMGKS 228 (401)
T ss_pred ccchhcCChHHH---HHHHHHHHHHHHhCCCC-eEEEEeccccCCCCCccccc
Confidence 367889999994 444444333211 2344 67788899999999999998
No 127
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=77.66 E-value=3.7 Score=44.83 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=30.2
Q ss_pred CCCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 007761 89 SDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~ 136 (590)
++++.+..| --|||+ |||||+.. --.+ |++...|+++.++.|=
T Consensus 31 ~~~~~iy~G-~dPT~~sLHlGhlv~---l~~l-~~lq~~G~~~~~ligd 74 (410)
T PRK13354 31 GKPLTLYLG-FDPTAPSLHIGHLVP---LMKL-KRFQDAGHRPVILIGG 74 (410)
T ss_pred CCCcEEEEc-ccCCCCCcchhhHHH---HHHH-HHHHHcCCeEEEEEcc
Confidence 456777778 789995 99999543 2233 4555689999887653
No 128
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=77.64 E-value=4.5 Score=42.83 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=26.8
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
+++.+.+| --|||.+||||.. .+ -.+.++++ .|+++.+..+
T Consensus 29 ~~~~v~~G-~~PTG~lHLG~~~-~~--~~~~~lq~-~g~~~~i~Ia 69 (329)
T PRK08560 29 EEPKAYIG-FEPSGKIHLGHLL-TM--NKLADLQK-AGFKVTVLLA 69 (329)
T ss_pred CCCEEEEc-cCCCCcchhhhhH-HH--HHHHHHHH-CCCeEEEEEc
Confidence 44555566 7889999999954 22 22556655 4888766543
No 129
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=77.57 E-value=5 Score=39.60 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=29.9
Q ss_pred Ccc--EEEEeechhhHHHHHH-HHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTT--MLETGHDILFFWVARM-VMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d--~~~~G~Dil~~W~~~~-~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.+| +++.|.||..--..-. ++-.+... ..|--..+.+|+|+..+|+||||.
T Consensus 157 ~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~-~~~~~~h~~~~~v~~~~~~kmS~R 210 (212)
T cd00671 157 GADKIIYVVGADHHGHFKRLFAALELLGYD-EAKKLEHLLYGMVNLPKEGKMSTR 210 (212)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHcCCC-CCCCeEEEEEEeEEcCCCCCCCCC
Confidence 455 5589999874322222 22222211 234344566799998889999995
No 130
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=75.18 E-value=6.8 Score=42.80 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=28.8
Q ss_pred CCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 90 DPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 90 k~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
+++.+..| --|||+ |||||... -..+.+++ ..|+++.++.|
T Consensus 32 ~~~~vy~G-~dPTg~slHlGhlv~---l~~l~~lQ-~~G~~~~~lig 73 (408)
T PRK05912 32 EPLRIYLG-FDPTAPSLHLGHLVP---LLKLRRFQ-DAGHKPIALIG 73 (408)
T ss_pred CCCEEEEe-ecCCCCCccHHhHHH---HHHHHHHH-HCCCcEEEEEc
Confidence 45666677 788995 99999773 23454444 57999888754
No 131
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=74.52 E-value=4.1 Score=37.86 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCeeecCCCCCC
Q 007761 119 MVRYHRMKGRPTLWLPGTDHA 139 (590)
Q Consensus 119 laR~~r~~G~~V~~~~G~D~~ 139 (590)
++|++|+.||+|.+..+.++.
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~ 32 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDD 32 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChH
Confidence 689999999999998876553
No 132
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=73.87 E-value=7.6 Score=41.12 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhCCcCC
Q 007761 177 YGGTITSQIKRLGASCD 193 (590)
Q Consensus 177 ~~~~~~~~l~~LGi~~D 193 (590)
....+..++.++|+..+
T Consensus 60 ~~~~~~~~~lA~GlDp~ 76 (328)
T TIGR00233 60 AREELAADILAVGLDPK 76 (328)
T ss_pred HHHHHHHHHHHhCcChh
Confidence 33445667778998776
No 133
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=73.70 E-value=3.9 Score=46.67 Aligned_cols=46 Identities=7% Similarity=-0.024 Sum_probs=29.9
Q ss_pred EEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 542 MLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 542 ~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
++|.|.||. ++|.++..+...+.-..| +++..||+.+ .+|.|||||
T Consensus 331 I~V~g~~q~-~h~~~v~~~l~~lG~~~~-~~l~h~~~~~-V~~~kmSkr 376 (566)
T TIGR00456 331 IYVWGSDHH-LHIAQFFAILEKLGFYKK-KELIHLNFGM-VPLGSMKTR 376 (566)
T ss_pred EEEecCcHH-HHHHHHHHHHHHcCCCCC-CceEEEEEEE-EECCCCCcc
Confidence 788898885 333444332222211235 8899999988 578999997
No 134
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=72.56 E-value=4.8 Score=41.64 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=31.8
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhcccc--CCCCCcEEEEe--ceEEeCCC--CccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEFT--GSVPFSHVYLH--GLIRDSQV--KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l~--~~~Pf~~v~~h--G~v~d~~G--~KMSKS 590 (590)
+-+|+...|.||.. .=+++-++..+.-. .-.+--..+.| .+|.+.+| .|||||
T Consensus 136 ~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS 195 (280)
T cd00806 136 YKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKS 195 (280)
T ss_pred ccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCC
Confidence 45688999999973 33344333332210 00222345566 88888887 499998
No 135
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=71.03 E-value=3.3 Score=42.57 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=24.8
Q ss_pred CCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 99 PNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 99 P~pnG-~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
--||| .+||||.... -.+.|++++ |++|.+..|
T Consensus 7 ~~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~ 40 (269)
T cd00805 7 FDPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIG 40 (269)
T ss_pred eCCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEEC
Confidence 45899 8999998753 367777765 999888655
No 136
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=70.74 E-value=11 Score=41.27 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=52.0
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
|.+| --|||.|||||..+.+-. ..+.+...|+++.+.. .|-|.+- ...++.+ .
T Consensus 5 vlSG-iqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I-ADlHAlT-----------~~~dp~~-----l------- 57 (431)
T PRK12284 5 VLTG-ITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL-ADYHALI-----------KCDDPAR-----I------- 57 (431)
T ss_pred EEEE-ecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe-echhhcc-----------CCCCHHH-----H-------
Confidence 3445 568999999998776542 3344455698876643 2333221 0111211 1
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccc-cCChhHHHHHHHHHHHHHhcCce
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERF-TLDEQLSRAVVEAFIRLHEKGLI 222 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~-T~~~~~~~~v~~~f~~L~~kG~i 222 (590)
......+..++-+.|+..+-..-+. +.-+++. ...|++..+-..|.+
T Consensus 58 -r~~~~e~aa~~LA~GlDPek~~if~QSdvpeh~-EL~wiL~~it~~g~L 105 (431)
T PRK12284 58 -QRSTLEIAATWLAAGLDPERVTFYRQSDIPEIP-ELTWLLTCVAGKGLL 105 (431)
T ss_pred -HHHHHHHHHHHHHhCCCccceEEEECCcchhHH-HHHHHHHhhhhHHHH
Confidence 2233446678888998766111111 2234443 345566555544444
No 137
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=69.00 E-value=7.7 Score=38.96 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=31.3
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.-++..+-|.|.+-. =.+..+.-.+.. .. -...-+++++|.+|+|||||
T Consensus 108 ~gIThViRG~D~l~st~~q~~l~~~Lg~--~~--P~~~H~pll~~~~g~KLSKr 157 (230)
T cd00418 108 MGITHVLRGEDHLDNTPIQDWLYEALGW--EP--PRFYHFPRLLLEDGTKLSKR 157 (230)
T ss_pred cCCCEEEECHhhhhchHHHHHHHHHcCC--CC--CeEEEeeeeeCCCCCCccCc
Confidence 346677788888853 222222222222 22 46677889999999999997
No 138
>PLN02886 aminoacyl-tRNA ligase
Probab=68.14 E-value=6.3 Score=42.64 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=39.9
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
+..| --|||.+||||..+++ .-...+++ |+++.+.. .|-|-+- ...++.+
T Consensus 49 v~sG-iqPSG~lHLGnylGai--~~~v~lQ~--~~~~~~~I-ADlHAlt-----------~~~~~~~------------- 98 (389)
T PLN02886 49 VVSG-VQPTGSIHLGNYLGAI--KNWVALQE--TYDTFFCV-VDLHAIT-----------LPHDPRE------------- 98 (389)
T ss_pred EEEE-ECCCCccHHHHHHHHH--HHHHHHhc--cCCEEEEE-ecHHHhh-----------CCCCHHH-------------
Confidence 3345 5688999999988776 23334443 88875532 2433210 1112221
Q ss_pred HHHHHHHHHHHHHHhCCcCC
Q 007761 174 KEKYGGTITSQIKRLGASCD 193 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~D 193 (590)
..++...+..++.++|+..+
T Consensus 99 lr~~~~~~~a~~lA~GlDP~ 118 (389)
T PLN02886 99 LGKATRSTAAIYLACGIDPS 118 (389)
T ss_pred HHHHHHHHHHHHHHcCcCcc
Confidence 13344456778889998776
No 139
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=68.09 E-value=3.7 Score=46.13 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=31.0
Q ss_pred CccEEEEeechhh---HHHHHHHHhhccccCCCC--CcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILF---FWVARMVMMGIEFTGSVP--FSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~---~W~~~~~~~~~~l~~~~P--f~~v~~hG~v~d~~G~KMSKS 590 (590)
-+|+=.-|+|..- +|..++-+.--.+.+..| |...++| ++.+|+|||||
T Consensus 225 gV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~---L~~~g~KMSKS 278 (515)
T TIGR00467 225 KVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWIS---LKGKGGKMSSS 278 (515)
T ss_pred CcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEE---EcCCCccccCC
Confidence 4555556888874 366666544434555556 3444444 66789999998
No 140
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=67.82 E-value=5 Score=43.43 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=20.4
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHH-HcCCCeeec
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHR-MKGRPTLWL 133 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r-~~G~~V~~~ 133 (590)
--|||.+||||..+.+. .+.. ..|+++.+.
T Consensus 9 iqPSG~~HLGnylG~ik-----~wv~lq~~~~~~~~ 39 (398)
T PRK12283 9 MRPTGRLHLGHYHGVLK-----NWVKLQHEYECFFF 39 (398)
T ss_pred eCCCCcchHHHHHHHHH-----HHHHHhcCCcEEEE
Confidence 46899999999988542 4333 457776543
No 141
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.62 E-value=4.7 Score=42.28 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=30.4
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCC-CeeecCCCCCCC
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGR-PTLWLPGTDHAG 140 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~-~V~~~~G~D~~G 140 (590)
.++.|.+| --|||.|||||..+++. .+++...++ ++.+. =.|.|.
T Consensus 4 ~~~~vlSG-~~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~~-IaDlha 49 (314)
T COG0180 4 KKFRVLSG-IQPSGKLHLGNYLGAIR----NWVLLQEEYYECFFF-IADLHA 49 (314)
T ss_pred CCceEEec-CCCCCCcchhHhHHHHH----HHHHHhcccCceEEE-EecHHH
Confidence 45666677 78999999999977654 466666674 66553 235443
No 142
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=65.52 E-value=7.2 Score=41.40 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=22.2
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
--|||.+||||..+.+.. +.+++. +++|.+..
T Consensus 8 ~~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~I 39 (333)
T PRK00927 8 IQPTGKLHLGNYLGAIKN--WVELQD--EYECFFCI 39 (333)
T ss_pred eCCCccchHHhHHHHHHH--HHHHHh--cCCeEEEE
Confidence 468999999999877532 445554 37776654
No 143
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=64.81 E-value=6.4 Score=42.53 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=28.0
Q ss_pred CEEEeCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 91 PFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 91 ~f~i~~~pP~pnG-~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++.+.+| --||| .|||||+.. .-.+.+++ ..|++|..+.|
T Consensus 30 ~~~vy~G-~dPTg~~lHlGh~v~---l~~l~~lq-~~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVG-FDPTAPSLHLGHLVP---LLKLRDFQ-QAGHEVIVLLG 70 (377)
T ss_pred CCEEEEe-eCCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEe
Confidence 4556666 77899 899999764 23344444 47999988764
No 144
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=63.84 E-value=9 Score=38.70 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=31.2
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.-++..+-|.|.+.. =.+..+.-.+.. ..| ...-++++++.+|+||||+
T Consensus 117 ~~ithViRG~D~~~~t~~q~~l~~aLg~--~~p--~~~h~pll~~~~g~KLSKR 166 (239)
T cd00808 117 MGITHVIRGEEHLSSTPKQILLYEALGW--EPP--KFAHLPLILNPDGKKLSKR 166 (239)
T ss_pred cCCCEEEEChhhhhChHHHHHHHHHcCC--CCC--ceEeeccccCCCCCcccCC
Confidence 456778889998852 222222222222 223 5667788889999999997
No 145
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=60.18 E-value=8.2 Score=41.72 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=7.7
Q ss_pred CeeecCCCCCCC
Q 007761 129 PTLWLPGTDHAG 140 (590)
Q Consensus 129 ~V~~~~G~D~~G 140 (590)
....-.|+|-.|
T Consensus 30 ~~~vy~G~dPTg 41 (377)
T TIGR00234 30 KIKLYVGFDPTA 41 (377)
T ss_pred CCEEEEeeCCCC
Confidence 455566777666
No 146
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.41 E-value=25 Score=36.97 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhCCcCC
Q 007761 175 EKYGGTITSQIKRLGASCD 193 (590)
Q Consensus 175 ~~~~~~~~~~l~~LGi~~D 193 (590)
..+...+..++-++|+..+
T Consensus 62 ~~~~~e~~a~~LA~GiDP~ 80 (314)
T COG0180 62 RQATREVAADYLAVGLDPE 80 (314)
T ss_pred HHHHHHHHHHHHHhccCcc
Confidence 3445556677888998877
No 147
>PLN02886 aminoacyl-tRNA ligase
Probab=58.03 E-value=14 Score=40.14 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCccEEEEeechh-hHHHHHHHH
Q 007761 538 YPTTMLETGHDIL-FFWVARMVM 559 (590)
Q Consensus 538 ~P~d~~~~G~Dil-~~W~~~~~~ 559 (590)
|-+|+...|.||. |.=++|-++
T Consensus 183 ~~a~~VPVG~DQ~qH~eLtRdiA 205 (389)
T PLN02886 183 YQADLVPVGEDQKQHLELTRDIA 205 (389)
T ss_pred cCCCeEEEccchHHHHHHHHHHH
Confidence 5688999999998 344444443
No 148
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=54.94 E-value=11 Score=40.81 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=25.8
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
+++.+..| --|||.+||||+ ++..--+..+ ...|++|.+..+
T Consensus 65 ~~~~v~~G-~~PTG~lHLG~g--~i~~~~~~~l-q~~G~~v~~~Ia 106 (383)
T PTZ00126 65 ERPICYDG-FEPSGRMHIAQG--ILKAINVNKL-TKAGCVFVFWVA 106 (383)
T ss_pred CCCEEEEE-ECCCCcccccch--HhHhHHHHHH-HhCCCeEEEEEc
Confidence 45555566 678999999993 2111223333 455999888643
No 149
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=51.04 E-value=9.4 Score=39.52 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=28.8
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++++.+.+| --|||.|||||.... ..+.++++ .|++|....|
T Consensus 3 ~~~~~~y~G-~~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 3 NKPFRVYTG-IDPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp HSSEEEEEE-EESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEE
T ss_pred CCCcEEEEe-ECCCCcccchHHHHH---HHHHHHHh-cCCccceEec
Confidence 456777777 789999999987654 33444444 8999988654
No 150
>PLN02486 aminoacyl-tRNA ligase
Probab=49.41 E-value=17 Score=39.40 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=28.0
Q ss_pred cEEEEeechh-hHHHHHHHHhhccccCCCCCcEEEEeceEEeCCC--CccccC
Q 007761 541 TMLETGHDIL-FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV--KKCQKH 590 (590)
Q Consensus 541 d~~~~G~Dil-~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G--~KMSKS 590 (590)
.+...|.||- ++=++|-++--+ ....| .++.|.++...+| .|||||
T Consensus 221 ~lVPvG~DQd~~~~ltRdia~r~--~~~kp--~~~~~~~lp~L~g~~~KMSkS 269 (383)
T PLN02486 221 CLIPCAIDQDPYFRMTRDVAPRL--GYYKP--ALIESRFFPALQGESGKMSAS 269 (383)
T ss_pred ceeecccchHHHHHHHHHHHHHh--CCCCc--ceeccccccCCCCCCCcCcCc
Confidence 4666799986 344444444333 33345 3334566777777 799998
No 151
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=48.59 E-value=41 Score=36.58 Aligned_cols=18 Identities=11% Similarity=-0.104 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhCCcCC
Q 007761 176 KYGGTITSQIKRLGASCD 193 (590)
Q Consensus 176 ~~~~~~~~~l~~LGi~~D 193 (590)
.+...+..++.++|+..+
T Consensus 58 ~~~~~~~a~~lA~GlDP~ 75 (398)
T PRK12283 58 KNVWDMVIDWLAAGVDPA 75 (398)
T ss_pred HHHHHHHHHHHHcCCCcc
Confidence 444557788999998776
No 152
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=48.53 E-value=16 Score=38.79 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=21.3
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~ 133 (590)
--|||.+||||..+++.. ..+.+...|.++.+.
T Consensus 10 iqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~ 42 (332)
T PRK12556 10 IKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF 42 (332)
T ss_pred ECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE
Confidence 468999999998776542 223444456656554
No 153
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.18 E-value=19 Score=39.20 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=27.6
Q ss_pred CEEEeCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 91 PFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 91 ~f~i~~~pP~pnG-~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
+..+..| -=||| .|||||..... .+ |-+...|++|..+.|
T Consensus 32 ~~~~Y~G-fDPTa~slHlGhlv~l~---kL-~~fQ~aGh~~ivLig 72 (401)
T COG0162 32 PLRVYIG-FDPTAPSLHLGHLVPLM---KL-RRFQDAGHKPIVLIG 72 (401)
T ss_pred CceEEEe-eCCCCCccchhhHHHHH---HH-HHHHHCCCeEEEEec
Confidence 3444445 56799 79999986532 23 555678999999875
No 154
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=44.52 E-value=27 Score=40.68 Aligned_cols=50 Identities=18% Similarity=0.105 Sum_probs=30.2
Q ss_pred CCccEEEEeechh-hHHHHHHHHhhccccCCCCCcEEEEeceEEeCCC--CccccC
Q 007761 538 YPTTMLETGHDIL-FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV--KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil-~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G--~KMSKS 590 (590)
+.+|+...|.||. |.=++|-++-.+ ++.|=..++.|.++.+.+| .|||||
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~~---g~~~kpvil~~~~LpGL~gg~~KMSKS 226 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDLI---GRKLKPVILSHHMLAGLKQGQAKMSKS 226 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHh---CCCCCceecccccCcCCCCCCCcCCCC
Confidence 5688989999996 444455444322 2222012345677766653 699998
No 155
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=43.83 E-value=28 Score=37.33 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=23.5
Q ss_pred CCccEEEEeechhh---HHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILF---FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~---~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.-+|+=.-|||..- .|-...-+.--.+...+| .-+.-.|++++.|+|||||
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP--~~~~YE~~~~~g~~kmSsS 286 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPP--VPFPYEFFLDKGGGKMSSS 286 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-------EEEEE--EEES--------
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHHhCCCCC--CCCCeeEEEeCCCcccccC
Confidence 36788888999987 565555444334445555 4456689999888899998
No 156
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=43.77 E-value=23 Score=41.20 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=25.1
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~ 133 (590)
+++.+..| --|||.+||||. +++=+-.+-++..|++|.+.
T Consensus 31 ~~~rv~sG-i~PTG~lHLGng---~~~aik~~~~~q~g~~~~~l 70 (682)
T PTZ00348 31 PLIRCYDG-FEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFW 70 (682)
T ss_pred CCCEEEEe-eCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEE
Confidence 35566667 789999999993 23311122223579988764
No 157
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=43.45 E-value=48 Score=34.87 Aligned_cols=48 Identities=21% Similarity=0.137 Sum_probs=31.1
Q ss_pred CccEEEEeechhh-HHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~-~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-+.-.+-|.|.+. ...+..+.-.+.+ +.-...-|.+++|.+|+|+||+
T Consensus 199 gITHViRG~D~l~~t~~Q~~L~~~Lg~----~~P~~~H~pl~l~~~g~kLSKR 247 (314)
T PF00749_consen 199 GITHVIRGEDLLSSTPRQILLYEALGW----PPPPYAHLPLILNEDGKKLSKR 247 (314)
T ss_dssp T-SEEEEEGGGTTCHHHHHHHHHHCTS----SS-EEEEEEEEEETTSSBSSTT
T ss_pred ccCeEEEccccccccHHHHHHHHHhCC----CCcceEeeeeeecCCCcEechh
Confidence 4566778998885 3444444444433 2134455688999999999996
No 158
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=41.77 E-value=48 Score=31.42 Aligned_cols=91 Identities=19% Similarity=0.329 Sum_probs=47.5
Q ss_pred HHHHHHHcCCCeeecC-CCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCc
Q 007761 119 MVRYHRMKGRPTLWLP-GTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 197 (590)
Q Consensus 119 laR~~r~~G~~V~~~~-G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~ 197 (590)
+||++|+.||++.+.. ..|+- +...+..+|. .-++++. ..+++ . ++|+..
T Consensus 18 LARwLRllGydt~~~~~~~d~~-------i~~i~~~e~r--IllTRDr-------------~L~~r-~-k~g~~~----- 68 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESDDE-------IILIAKKEGR--ILLTRDR-------------ELYKR-A-KLGIKA----- 68 (165)
T ss_pred HHHHHHHcCCceeeeccCCcHH-------HHHHHhcCCe--EEEeccH-------------HHHHH-h-hccCce-----
Confidence 7999999999999986 33331 2223333332 2122110 01122 2 455432
Q ss_pred cccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCC
Q 007761 198 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSD 241 (590)
Q Consensus 198 ~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd 241 (590)
++..+.+..+++.+++.+|-.++-+.. ...=||.|++.|..
T Consensus 69 i~i~~~s~~~Ql~e~~~~~~l~~~~~~---e~~RCp~CN~~L~~ 109 (165)
T COG1656 69 ILIRSDSIEEQLAEFLARLGLKPRLFP---EFSRCPECNGELEK 109 (165)
T ss_pred EEEeCCCHHHHHHHHHHHhccchhccc---ccccCcccCCEecc
Confidence 222233455667777777766552222 12358999988743
No 159
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=34.19 E-value=48 Score=34.66 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=28.6
Q ss_pred CccEEEEeechhhHH-HHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~W-~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-++-.+=|.|.+-.- .+..+.-.+.. ..| ...-+++++|.+|+||||+
T Consensus 192 gIThVvRG~D~l~~t~~Q~~l~~aLg~--~~P--~y~H~pll~~~~g~kLSKr 240 (299)
T PRK05710 192 GVTHVVRGADLLDSTPRQIYLQQLLGL--PTP--RYLHLPLVLNADGQKLSKQ 240 (299)
T ss_pred CCCEEEeChhhhhcCHHHHHHHHHcCC--CCC--eEEEeecccCCCCCccccc
Confidence 355566677776432 22222222222 234 5555689999999999996
No 160
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=33.00 E-value=64 Score=29.40 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=31.0
Q ss_pred CccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecc------cC-----------ccCCCCHHHHHH
Q 007761 316 KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV------AG-----------LFRGLDRFEARK 375 (590)
Q Consensus 316 ~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~------~~-----------~~~G~~~~~a~~ 375 (590)
+--+++.|||+|- +|+||-- ....--+|++|.+.+. || ...|+++.||-+
T Consensus 47 dK~dpnVGtGlVG-APACGDV---------MkLqIkvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 47 DKNDPNVGTGLVG-APACGDV---------MKLQIKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred CCCCCCccccccc-Cccccce---------eeEEEEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHh
Confidence 4456788999995 8888752 1222236778877542 22 256777777643
No 161
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=32.57 E-value=40 Score=34.80 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=29.2
Q ss_pred CccEEEEeechhhHHH-HHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~W~-~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-++-.+-|.|.+..-+ +..+.-.+. -..| ...-+++++|.+|+|+||+
T Consensus 185 gIThViRG~D~l~~t~~q~~l~~aLg--~~~P--~y~H~pll~~~~g~kLSKR 233 (272)
T TIGR03838 185 GITHVVRGADLLDSTPRQIYLQRLLG--LPPP--RYLHLPLVVNADGEKLSKQ 233 (272)
T ss_pred CCCEEEeCHhhhhccHHHHHHHHHhC--CCCC--eEEechhhhCCCCCeeecc
Confidence 4556667888775322 222222222 2345 4555689999999999996
No 162
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=32.24 E-value=24 Score=33.37 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=10.5
Q ss_pred CCceeEEeeecccccccc
Q 007761 403 GGEVIEPLVSKQWFVTME 420 (590)
Q Consensus 403 ~~~~v~~~~~~QWFi~~~ 420 (590)
.|+.++++++||||.+-+
T Consensus 23 k~KK~V~iiSPQWF~k~G 40 (163)
T PF04918_consen 23 KNKKAVFIISPQWFTKKG 40 (163)
T ss_dssp TT-EEEEE--GGG--TT-
T ss_pred cCCcEEEEECCcccCCCC
Confidence 488999999999999865
No 163
>PLN02286 arginine-tRNA ligase
Probab=30.95 E-value=77 Score=36.35 Aligned_cols=48 Identities=8% Similarity=-0.113 Sum_probs=29.1
Q ss_pred EEEEeechhhHHHHHHHHhhccccCCCC----CcEEEEeceEEeCCCCccccC
Q 007761 542 MLETGHDILFFWVARMVMMGIEFTGSVP----FSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 542 ~~~~G~Dil~~W~~~~~~~~~~l~~~~P----f~~v~~hG~v~d~~G~KMSKS 590 (590)
++|.|.||. ++|.++..+.-.+....+ --.++..|+|+..+|+||||.
T Consensus 331 IyVvg~~q~-~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR 382 (576)
T PLN02286 331 IYVTDVGQQ-QHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTR 382 (576)
T ss_pred EEEEeCcHH-HHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCC
Confidence 788998885 334444333222211111 134688999977899999984
No 164
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.55 E-value=59 Score=28.79 Aligned_cols=51 Identities=25% Similarity=0.425 Sum_probs=40.2
Q ss_pred HHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHh-cCceEEcceeEEE
Q 007761 181 ITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHE-KGLIYQGSYMVNW 231 (590)
Q Consensus 181 ~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~-kG~iY~~~~~v~w 231 (590)
....++.||.++.|...--|......+++..++.++++ +|+.|.+.+..-|
T Consensus 22 hl~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~ 73 (119)
T COG3171 22 HLGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDW 73 (119)
T ss_pred cHHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceee
Confidence 44568999999998876666666777888888888887 5999999866655
No 165
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=30.19 E-value=1.7e+02 Score=29.43 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=51.2
Q ss_pred EEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHH
Q 007761 92 FVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVW 171 (590)
Q Consensus 92 f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~ 171 (590)
.++...-++++|.+++.+-.. -+. .+.+..+..|.+|+...|-...+... .++ .++ ..++.|+
T Consensus 26 v~~~f~~i~~~G~l~~~~~~~-~~~-~~~~~~~~~~~kvl~sigg~~~~~~~-----~~~----~~~--~~r~~fi---- 88 (253)
T cd06545 26 INLAFANPDANGTLNANPVRS-ELN-SVVNAAHAHNVKILISLAGGSPPEFT-----AAL----NDP--AKRKALV---- 88 (253)
T ss_pred EEEEEEEECCCCeEEecCcHH-HHH-HHHHHHHhCCCEEEEEEcCCCCCcch-----hhh----cCH--HHHHHHH----
Confidence 334444567788887764221 112 22344455788887755433222110 011 011 1122333
Q ss_pred HHHHHHHHHHHHHHHHh---CCcCCCCCccccCChhHHHHHHHHHHHHHhcCc
Q 007761 172 EWKEKYGGTITSQIKRL---GASCDWTRERFTLDEQLSRAVVEAFIRLHEKGL 221 (590)
Q Consensus 172 ~~~~~~~~~~~~~l~~L---Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~ 221 (590)
+.+.+.+++. ||.+||+..... ..++..++.++-..|.+.|+
T Consensus 89 -------~~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~ 133 (253)
T cd06545 89 -------DKIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGK 133 (253)
T ss_pred -------HHHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCc
Confidence 3333333444 788898875322 34566677777666665554
No 166
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=29.79 E-value=28 Score=37.04 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=13.6
Q ss_pred CCCCCCCCchhhHHHHH
Q 007761 99 PNVTGSLHMGHAMFVTL 115 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl 115 (590)
--|||.+||||..+.+.
T Consensus 9 ~~PTG~~HLGn~l~~~~ 25 (333)
T PRK12282 9 DRPTGKLHLGHYVGSLK 25 (333)
T ss_pred eCCCCcchHHHHHHHHH
Confidence 45789999999887654
No 167
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=29.61 E-value=90 Score=35.18 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCccEEEEeechhhHHHHHH-HHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFFWVARM-VMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~W~~~~-~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.-++-.+-|.|++..-..-. +.-.+. ... ....-+++|+|.+|+||||+
T Consensus 195 m~ithVIRG~d~~~~t~~q~~l~~aLG--~~~--p~~~H~plv~~~~g~KLSKR 244 (513)
T PRK14895 195 MGITHIIRGDDHLTNAARQLAIYQAFG--YAV--PSMTHIPLIHGADGAKLSKR 244 (513)
T ss_pred cCCCEEEECchHhhhHHHHHHHHHHcC--CCC--CeEEEEEeEEcCCCCccccc
Confidence 35677778988885432222 222222 122 47778899999999999995
No 168
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=26.78 E-value=58 Score=37.24 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHH
Q 007761 375 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEK 444 (590)
Q Consensus 375 ~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~ 444 (590)
..|++.|++.|+- .......||+||-. +......++||-++.++-+.+.+.-.++++.++.-++-.
T Consensus 159 ~kLIe~L~~iGY~---~~nL~gAPYDWRls-~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGg 224 (642)
T PLN02517 159 AVLIANLARIGYE---EKNMYMAAYDWRLS-FQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGV 224 (642)
T ss_pred HHHHHHHHHcCCC---CCceeecccccccC-ccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCch
Confidence 6789999999996 35677889999944 122234589998888877776665334578888877654
No 169
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.21 E-value=1e+02 Score=35.37 Aligned_cols=51 Identities=14% Similarity=-0.005 Sum_probs=28.3
Q ss_pred CCcc--EEEEeechhhHHHHHHHHhhccccCCCCCcEEE---EeceEEeCCCCccccC
Q 007761 538 YPTT--MLETGHDILFFWVARMVMMGIEFTGSVPFSHVY---LHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d--~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~---~hG~v~d~~G~KMSKS 590 (590)
+.+| +++.|.||.. ++.++.+....+--..+ +.++ ..|++.+.+|.||||.
T Consensus 332 ~~~d~~IyV~gadq~~-~~~ql~~~l~~~g~~~~-~~~~~h~~~~l~~~~~g~kmStR 387 (577)
T COG0018 332 RGFDKLIYVLGADQHG-HFKQLKAVLELLGYGPD-KEVLLHQGVGLVRGGEGVKMSTR 387 (577)
T ss_pred cCCCEEEEEeCCcchh-HHHHHHHHHHHhcCCCc-cceEEEEEEeeeECCCCcccccc
Confidence 4445 7889988864 33333321111111122 2333 4478888899999983
No 170
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.17 E-value=3.1e+02 Score=24.84 Aligned_cols=21 Identities=10% Similarity=-0.213 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCCeeecCC
Q 007761 115 LEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 115 l~DilaR~~r~~G~~V~~~~G 135 (590)
-+++++++++..||+|...-+
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~ 38 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPL 38 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCC
Confidence 368999999999999988643
No 171
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=24.83 E-value=1.1e+02 Score=34.15 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=29.8
Q ss_pred CccEEEEeechhhHHHHH-HHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILFFWVAR-MVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~W~~~-~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-++..+-|.|++..-... .+.-.+. .+.....-+.++++.+|+||||.
T Consensus 197 ~ithvIrG~d~~~~t~~~~~l~~aLg----~~~p~~~H~p~l~~~~g~kLSKR 245 (470)
T TIGR00464 197 KITHVIRGEDHISNTPKQILIYQALG----WKIPVFAHLPMILDEDGKKLSKR 245 (470)
T ss_pred CCCEEEECchhhcCHHHHHHHHHHcC----CCCCeEEEEeeeecCCCcccccc
Confidence 567777898888532222 1222222 12246666777889999999995
No 172
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=24.81 E-value=41 Score=34.80 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=32.3
Q ss_pred cCCccEEEEeechhh-HHHHHHHHhhccccCCCCCcEEEEeceEEeCC-CCccccC
Q 007761 537 FYPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-VKKCQKH 590 (590)
Q Consensus 537 ~~P~d~~~~G~Dil~-~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~-G~KMSKS 590 (590)
+.-+|....|-||=. |-+++-.+-.+.-. - .-.+.|-||=... |.|||+|
T Consensus 175 ~L~vD~qfgGvDQRKIf~~A~eylp~l~yk---K-rihLmnpMvPGL~q~~KMSsS 226 (360)
T KOG2144|consen 175 YLEVDAQFGGVDQRKIFVLAEEYLPDLGYK---K-RIHLMNPMVPGLAQGEKMSSS 226 (360)
T ss_pred HHhhhHHhcCccHHHHHHHHHHhhhhhCcc---c-ceeecCCCCccccccCccccC
Confidence 356899999999965 44444433333221 1 3456777775555 9999998
No 173
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.12 E-value=61 Score=33.55 Aligned_cols=28 Identities=21% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHH
Q 007761 88 GSDPFVISMPPPNVTGSLHMGHAMFVTL 115 (590)
Q Consensus 88 ~~k~f~i~~~pP~pnG~LHiGH~r~~vl 115 (590)
++++|++.+|-=--++.+|+||.--+++
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPFif 109 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPFIF 109 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhHHH
Confidence 5789999998555567899999866543
No 174
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.29 E-value=2.3e+02 Score=29.49 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=50.2
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHH
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYG 178 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~ 178 (590)
--|||.+|+|+.++++-.-+-.-=....|-.|+| .=.|.|.+-+ ..++. +| .++.
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f-~vvDlHaITv-----------p~dp~-----~l--------rq~~ 74 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLF-SVVDLHAITV-----------PQDPA-----EL--------RQAT 74 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEE-EEeeceeecC-----------CCChH-----HH--------HHHH
Confidence 5789999999999987644322222233333333 1236665321 12221 11 2344
Q ss_pred HHHHHHHHHhCCcCCCCCccc-cCChhHHHHHHHHHHHHHhcCce
Q 007761 179 GTITSQIKRLGASCDWTRERF-TLDEQLSRAVVEAFIRLHEKGLI 222 (590)
Q Consensus 179 ~~~~~~l~~LGi~~Dw~~~~~-T~~~~~~~~v~~~f~~L~~kG~i 222 (590)
-.+...|-+.||...-..-+. ..-|.|.+ ..|++.-|-..|.+
T Consensus 75 ~dm~A~lLAcGIdp~Ks~lF~QS~Vpqh~e-l~WlLsslt~mg~L 118 (347)
T KOG2713|consen 75 HDMAASLLACGIDPEKSSLFVQSDVPQHAE-LSWLLSSLTTMGRL 118 (347)
T ss_pred HHHHHHHHHhccCcccceeeeeccchHHHH-HHHHHHhccchHHH
Confidence 456667777787665222222 22344543 45666665555544
No 175
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=20.02 E-value=4.6e+02 Score=24.88 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHh---CCcCCCCCccccC---ChhHHHHHHHHHHHHHhc
Q 007761 177 YGGTITSQIKRL---GASCDWTRERFTL---DEQLSRAVVEAFIRLHEK 219 (590)
Q Consensus 177 ~~~~~~~~l~~L---Gi~~Dw~~~~~T~---~~~~~~~v~~~f~~L~~k 219 (590)
+.+.+.+.+++. ||.+||+...... ...+...+.++=.+|.++
T Consensus 92 f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~ 140 (210)
T cd00598 92 FANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAA 140 (210)
T ss_pred HHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhccc
Confidence 344444444555 7888998764332 134445555554444443
Done!