Query 007761
Match_columns 590
No_of_seqs 252 out of 2063
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 09:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 100.0 1E-132 4E-137 1155.2 40.4 525 59-590 3-532 (862)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 3E-123 1E-127 1084.7 28.4 516 60-590 15-599 (917)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 8E-122 3E-126 1068.7 34.9 522 61-590 6-595 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 1E-104 4E-109 936.6 30.0 516 61-590 2-654 (967)
5 4arc_A Leucine--tRNA ligase; l 100.0 2E-101 8E-106 891.1 41.6 447 59-585 21-602 (880)
6 1wkb_A Leucyl-tRNA synthetase; 100.0 5E-100 2E-104 886.1 39.9 520 61-590 2-654 (810)
7 2v0c_A Aminoacyl-tRNA syntheta 100.0 6E-100 2E-104 885.2 38.3 444 62-582 3-580 (878)
8 1rqg_A Methionyl-tRNA syntheta 100.0 5.4E-63 1.8E-67 566.0 22.0 326 90-590 2-348 (722)
9 3u1f_A Methionyl-tRNA syntheta 100.0 2.6E-61 8.9E-66 538.1 23.7 304 87-590 6-327 (542)
10 2x1l_A Methionyl-tRNA syntheta 100.0 1.6E-59 5.6E-64 521.6 25.6 298 87-590 9-314 (524)
11 4dlp_A Aminoacyl-tRNA syntheta 100.0 2.6E-59 8.8E-64 521.0 26.3 295 89-590 24-325 (536)
12 3kfl_A Methionyl-tRNA syntheta 100.0 1.4E-59 4.7E-64 525.4 21.2 312 78-590 14-343 (564)
13 3h99_A Methionyl-tRNA syntheta 100.0 1.9E-59 6.5E-64 524.7 20.2 321 87-590 15-349 (560)
14 2d5b_A Methionyl-tRNA syntheta 100.0 1.6E-58 5.5E-63 510.8 24.9 292 89-590 2-301 (500)
15 2csx_A Methionyl-tRNA syntheta 100.0 1.1E-55 3.8E-60 487.8 17.9 288 89-590 4-299 (497)
16 1wka_A Valyl-tRNA synthetase; 100.0 9.9E-37 3.4E-41 282.1 16.7 140 250-393 3-146 (147)
17 1wny_A Isoleucyl-tRNA syntheta 100.0 8.7E-35 3E-39 279.8 13.1 145 250-396 2-186 (186)
18 2ajg_A Leucyl-tRNA synthetase; 100.0 2.7E-31 9.2E-36 257.5 14.6 139 250-389 9-194 (196)
19 3o0a_A Leucyl-tRNA synthetase 100.0 3.6E-30 1.2E-34 252.9 13.9 128 265-393 38-217 (219)
20 3tqo_A Cysteinyl-tRNA syntheta 100.0 4.9E-30 1.7E-34 277.2 12.2 127 91-236 25-152 (462)
21 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.1E-29 3.8E-34 275.6 12.7 120 97-235 48-177 (501)
22 3c8z_A Cysteinyl-tRNA syntheta 100.0 5.1E-29 1.7E-33 268.3 15.7 108 98-226 46-155 (414)
23 2wfg_A Cytosolic leucyl-tRNA s 100.0 3.6E-29 1.2E-33 252.3 10.8 134 264-397 32-256 (261)
24 2wfd_A Leucyl-tRNA synthetase, 99.9 6.5E-27 2.2E-31 235.0 14.6 126 263-390 28-250 (252)
25 1li5_A Cysrs, cysteinyl-tRNA s 99.9 1.2E-26 4.1E-31 252.7 12.3 118 98-235 29-148 (461)
26 3pz6_A Leurs, leucyl-tRNA synt 99.9 3.4E-26 1.2E-30 230.4 8.5 156 232-391 47-305 (311)
27 3fnr_A Arginyl-tRNA synthetase 99.7 2.8E-16 9.5E-21 170.5 14.6 159 68-232 9-198 (464)
28 2zue_A Arginyl-tRNA synthetase 99.6 1.5E-16 5.2E-21 179.1 9.4 158 75-238 104-311 (629)
29 1f7u_A Arginyl-tRNA synthetase 99.6 1.2E-15 4.2E-20 170.6 14.5 154 74-233 127-326 (607)
30 1iq0_A Arginyl-tRNA synthetase 99.6 3.8E-15 1.3E-19 167.0 10.6 136 91-230 104-275 (592)
31 1irx_A Lysyl-tRNA synthetase; 99.5 3E-15 1E-19 165.6 -1.4 123 90-220 20-147 (523)
32 1nzj_A Hypothetical protein YA 98.6 2.4E-08 8.3E-13 102.2 5.4 94 94-224 7-100 (298)
33 3aii_A Glutamyl-tRNA synthetas 98.5 1.2E-07 4.2E-12 103.7 8.3 94 93-224 97-190 (553)
34 2o5r_A Glutamyl-tRNA synthetas 98.5 1.9E-07 6.4E-12 101.7 9.6 100 91-224 12-116 (481)
35 1qtq_A GLNRS, protein (glutami 98.5 2.2E-07 7.6E-12 101.7 8.9 95 93-224 27-121 (553)
36 3al0_C Glutamyl-tRNA(Gln) amid 98.4 6.1E-07 2.1E-11 99.9 11.5 116 69-224 110-232 (592)
37 2hz7_A Glutaminyl-tRNA synthet 98.4 4.5E-07 1.5E-11 103.5 7.8 95 93-224 67-161 (851)
38 2cfo_A Glutamyl-tRNA synthetas 98.2 6.3E-07 2.2E-11 97.7 5.3 93 95-224 4-96 (492)
39 4g6z_A Glutamate-tRNA ligase; 98.2 1.6E-06 5.3E-11 94.1 7.9 96 91-224 25-120 (490)
40 3afh_A Glutamyl-tRNA synthetas 98.0 1.1E-05 3.6E-10 87.9 9.5 96 93-224 26-128 (488)
41 1j09_A Glutamyl-tRNA synthetas 98.0 9.2E-06 3.2E-10 88.0 8.1 94 95-224 4-104 (468)
42 4gri_A Glutamate--tRNA ligase; 98.0 1.3E-05 4.3E-10 88.1 9.1 97 94-224 26-127 (512)
43 2ja2_A Glutamyl-tRNA synthetas 97.9 3.5E-05 1.2E-09 84.0 9.8 95 94-224 8-109 (498)
44 2cyb_A Tyrosyl-tRNA synthetase 95.2 0.018 6.1E-07 59.3 5.6 50 537-590 168-218 (323)
45 4arc_A Leucine--tRNA ligase; l 94.9 0.021 7.1E-07 66.4 5.7 79 372-452 154-246 (880)
46 3fnr_A Arginyl-tRNA synthetase 94.2 0.024 8.4E-07 61.2 3.7 47 542-590 239-289 (464)
47 2v0c_A Aminoacyl-tRNA syntheta 93.2 0.11 3.7E-06 60.6 7.0 77 372-451 134-225 (878)
48 1irx_A Lysyl-tRNA synthetase; 92.0 0.042 1.4E-06 60.3 1.4 50 538-590 229-283 (523)
49 3tzl_A Tryptophanyl-tRNA synth 91.0 0.12 4E-06 53.1 3.4 52 538-590 138-196 (322)
50 1n3l_A Tyrosyl-tRNA synthetase 89.8 0.31 1.1E-05 51.0 5.5 49 538-590 177-226 (372)
51 2dlc_X Tyrosyl-tRNA synthetase 89.8 0.46 1.6E-05 50.1 6.8 42 89-135 37-78 (394)
52 2g36_A Tryptophanyl-tRNA synth 89.7 0.21 7.1E-06 51.7 3.9 52 538-590 152-209 (340)
53 2dlc_X Tyrosyl-tRNA synthetase 89.2 0.32 1.1E-05 51.3 5.0 49 538-590 181-231 (394)
54 2pid_A Tyrosyl-tRNA synthetase 88.4 0.3 1E-05 50.8 4.0 49 538-590 209-258 (356)
55 2cyb_A Tyrosyl-tRNA synthetase 88.1 0.94 3.2E-05 46.3 7.5 39 91-134 32-70 (323)
56 2yxn_A Tyrosyl-tRNA synthetase 88.1 0.25 8.6E-06 50.7 3.2 49 538-590 190-239 (322)
57 3tzl_A Tryptophanyl-tRNA synth 87.5 0.29 9.9E-06 50.2 3.2 33 99-135 10-42 (322)
58 1jil_A Tyrrs, tyrosyl-tRNA syn 87.5 0.3 1E-05 52.0 3.4 50 538-590 185-235 (420)
59 2ts1_A Tyrosyl-tRNA synthetase 87.2 0.28 9.5E-06 52.1 3.0 50 538-590 184-234 (419)
60 1h3f_A Tyrosyl-tRNA synthetase 86.6 0.47 1.6E-05 50.6 4.3 48 539-590 187-236 (432)
61 1yi8_B Tryptophanyl-tRNA synth 86.3 0.49 1.7E-05 49.1 4.2 52 538-590 161-219 (351)
62 1n3l_A Tyrosyl-tRNA synthetase 86.3 1.2 4.3E-05 46.4 7.3 38 93-135 37-74 (372)
63 2jan_A Tyrosyl-tRNA synthetase 86.1 0.53 1.8E-05 50.1 4.4 49 538-590 186-235 (432)
64 1i6k_A TRPRS, tryptophanyl-tRN 85.3 0.59 2E-05 48.0 4.1 52 538-590 136-196 (328)
65 2cya_A Tyrosyl-tRNA synthetase 84.9 0.92 3.1E-05 47.3 5.5 49 538-590 176-242 (364)
66 2el7_A Tryptophanyl-tRNA synth 84.9 0.59 2E-05 48.2 3.9 52 538-590 140-199 (337)
67 3vgj_A Tyrosyl-tRNA synthetase 84.5 0.69 2.4E-05 48.3 4.3 49 538-590 199-251 (373)
68 1y42_X Tyrosyl-tRNA synthetase 84.1 0.37 1.3E-05 50.7 2.1 41 90-135 63-104 (392)
69 2yy5_A Tryptophanyl-tRNA synth 83.5 0.77 2.6E-05 47.5 4.1 52 538-590 146-206 (348)
70 2j5b_A Tyrosyl-tRNA synthetase 82.1 0.78 2.7E-05 47.5 3.5 48 539-590 186-236 (348)
71 3hzr_A Tryptophanyl-tRNA synth 81.8 1.4 4.9E-05 46.1 5.4 47 540-590 225-273 (386)
72 3hzr_A Tryptophanyl-tRNA synth 81.1 1.3 4.4E-05 46.4 4.8 42 88-133 79-120 (386)
73 2zp1_A Tyrosyl-tRNA synthetase 80.2 1.4 4.8E-05 44.9 4.6 45 539-590 163-208 (314)
74 3tze_A Tryptophanyl-tRNA synth 80.2 1.6 5.6E-05 46.0 5.2 49 538-590 242-293 (406)
75 3a04_A Tryptophanyl-tRNA synth 79.4 0.9 3.1E-05 47.5 2.9 42 88-134 67-108 (372)
76 3i05_A Tryptophanyl-tRNA synth 79.3 0.86 3E-05 48.0 2.7 47 540-590 225-274 (395)
77 3jxe_A Tryptophanyl-tRNA synth 78.9 1.9 6.5E-05 45.3 5.2 47 540-590 208-257 (392)
78 2el7_A Tryptophanyl-tRNA synth 78.8 1.2 4.1E-05 45.9 3.5 33 100-135 9-42 (337)
79 2ip1_A Tryptophanyl-tRNA synth 78.5 1.8 6.1E-05 46.1 4.9 49 538-590 248-299 (432)
80 3hv0_A Tryptophanyl-tRNA synth 78.5 2.6 9E-05 44.2 6.1 41 89-133 72-113 (393)
81 3a04_A Tryptophanyl-tRNA synth 77.6 2.9 9.9E-05 43.6 6.1 53 538-590 207-260 (372)
82 3hv0_A Tryptophanyl-tRNA synth 76.7 1.7 5.7E-05 45.7 4.0 46 541-590 222-270 (393)
83 3i05_A Tryptophanyl-tRNA synth 76.2 2.1 7.3E-05 44.9 4.6 42 88-133 75-117 (395)
84 3p0j_A Tyrosyl-tRNA synthetase 76.1 3.3 0.00011 46.7 6.4 46 90-141 39-85 (690)
85 3sz3_A Tryptophanyl-tRNA synth 75.7 1 3.5E-05 46.5 1.9 52 538-590 142-205 (341)
86 3p0j_A Tyrosyl-tRNA synthetase 75.4 1.6 5.5E-05 49.2 3.6 49 538-590 182-234 (690)
87 1yi8_B Tryptophanyl-tRNA synth 74.4 1.2 4E-05 46.2 2.0 37 93-134 24-60 (351)
88 1r6t_A Tryptophanyl-tRNA synth 74.3 2.1 7.2E-05 46.1 4.1 43 89-135 153-196 (477)
89 1r6u_A Tryptophanyl-tRNA synth 74.1 2.3 7.9E-05 45.3 4.3 49 538-590 255-306 (437)
90 1r6u_A Tryptophanyl-tRNA synth 73.8 2.1 7E-05 45.7 3.8 44 88-135 105-149 (437)
91 2ip1_A Tryptophanyl-tRNA synth 73.8 1.8 6.2E-05 46.1 3.4 43 89-135 100-143 (432)
92 2cyc_A Tyrosyl-tRNA synthetase 73.4 2.9 0.0001 43.6 4.8 51 538-590 179-255 (375)
93 2cyc_A Tyrosyl-tRNA synthetase 72.9 3.4 0.00012 43.1 5.1 79 93-193 35-114 (375)
94 3tze_A Tryptophanyl-tRNA synth 72.7 3.6 0.00012 43.3 5.3 41 89-133 99-140 (406)
95 1nzj_A Hypothetical protein YA 72.4 3 0.0001 42.1 4.5 49 539-590 184-232 (298)
96 3jxe_A Tryptophanyl-tRNA synth 71.6 1.8 6.2E-05 45.4 2.7 43 89-135 71-113 (392)
97 3foc_A Tryptophanyl-tRNA synth 71.5 2.7 9.2E-05 44.9 4.0 41 89-133 89-130 (451)
98 1i6k_A TRPRS, tryptophanyl-tRN 71.4 1.4 4.7E-05 45.3 1.7 32 100-135 9-40 (328)
99 1r6t_A Tryptophanyl-tRNA synth 71.0 3 0.0001 45.0 4.3 49 538-590 302-353 (477)
100 2g36_A Tryptophanyl-tRNA synth 70.7 2 6.9E-05 44.2 2.7 33 99-134 19-51 (340)
101 2zp1_A Tyrosyl-tRNA synthetase 70.0 2.2 7.5E-05 43.4 2.8 41 90-135 27-67 (314)
102 3foc_A Tryptophanyl-tRNA synth 69.1 2.8 9.4E-05 44.8 3.4 45 542-590 290-337 (451)
103 1iq0_A Arginyl-tRNA synthetase 68.6 1.8 6.1E-05 48.1 1.9 18 572-590 381-398 (592)
104 3n9i_A Tryptophanyl-tRNA synth 68.4 3.2 0.00011 42.8 3.7 52 538-590 151-211 (346)
105 2cya_A Tyrosyl-tRNA synthetase 67.0 2.8 9.6E-05 43.6 2.9 40 91-135 35-74 (364)
106 1y42_X Tyrosyl-tRNA synthetase 66.4 2.6 8.9E-05 44.3 2.6 14 127-140 62-75 (392)
107 2cfo_A Glutamyl-tRNA synthetas 65.9 7.3 0.00025 42.1 6.0 49 538-590 202-251 (492)
108 2j5b_A Tyrosyl-tRNA synthetase 64.3 3.6 0.00012 42.4 3.1 42 90-135 39-80 (348)
109 2o5r_A Glutamyl-tRNA synthetas 63.6 7.8 0.00027 41.7 5.7 50 538-590 217-266 (481)
110 3vgj_A Tyrosyl-tRNA synthetase 63.4 3.4 0.00012 43.1 2.7 41 90-135 55-96 (373)
111 2ts1_A Tyrosyl-tRNA synthetase 63.0 3 0.0001 44.2 2.2 40 91-135 30-70 (419)
112 2zue_A Arginyl-tRNA synthetase 62.8 4.2 0.00014 45.4 3.5 18 572-590 411-428 (629)
113 2yxn_A Tyrosyl-tRNA synthetase 62.1 2.9 9.8E-05 42.7 1.8 40 91-135 33-73 (322)
114 2yy5_A Tryptophanyl-tRNA synth 61.4 2.3 8E-05 43.9 1.1 32 99-134 11-42 (348)
115 1jil_A Tyrrs, tyrosyl-tRNA syn 61.1 3 0.0001 44.2 1.8 40 91-135 32-72 (420)
116 2jan_A Tyrosyl-tRNA synthetase 61.0 3.4 0.00012 43.9 2.2 40 91-135 32-72 (432)
117 1h3f_A Tyrosyl-tRNA synthetase 60.3 4.1 0.00014 43.3 2.7 42 89-135 35-77 (432)
118 2pid_A Tyrosyl-tRNA synthetase 60.0 4 0.00014 42.3 2.5 40 91-135 46-86 (356)
119 3prh_A Tryptophanyl-tRNA synth 59.7 2.4 8.1E-05 44.5 0.7 40 90-134 30-73 (388)
120 3prh_A Tryptophanyl-tRNA synth 55.6 6.1 0.00021 41.3 3.0 52 538-590 170-230 (388)
121 3sz3_A Tryptophanyl-tRNA synth 55.0 3.4 0.00012 42.5 1.0 32 99-134 13-44 (341)
122 1j09_A Glutamyl-tRNA synthetas 48.8 18 0.00061 38.7 5.4 48 539-590 199-247 (468)
123 3afh_A Glutamyl-tRNA synthetas 46.9 23 0.00079 38.1 5.9 48 539-590 211-259 (488)
124 3n9i_A Tryptophanyl-tRNA synth 45.3 5.4 0.00019 41.1 0.7 32 99-134 22-53 (346)
125 2ja2_A Glutamyl-tRNA synthetas 40.1 34 0.0012 36.9 6.0 49 539-590 208-261 (498)
126 3al0_C Glutamyl-tRNA(Gln) amid 25.9 34 0.0012 37.7 3.0 47 540-590 316-363 (592)
127 3aii_A Glutamyl-tRNA synthetas 20.6 47 0.0016 36.2 2.7 48 538-590 285-333 (553)
128 4g6z_A Glutamate-tRNA ligase; 20.5 1.3E+02 0.0045 32.2 6.2 48 539-590 220-268 (490)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=1.3e-132 Score=1155.23 Aligned_cols=525 Identities=49% Similarity=0.901 Sum_probs=493.4
Q ss_pred CCCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (590)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D 137 (590)
.++.|++ ++|++||++|++ +.|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D 81 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD 81 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEB
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccC
Confidence 3678998 899999999999 99999876678899999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHH
Q 007761 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (590)
Q Consensus 138 ~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (590)
|||+|+|.++++.+.+.|+++.++++++|++.||+|++++.+.|+++|++||+++||+++++|++++|.+.|+++|.+|+
T Consensus 82 ~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 161 (862)
T 1gax_A 82 HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYY 161 (862)
T ss_dssp CCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccC
Q 007761 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIG 297 (590)
Q Consensus 218 ~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G 297 (590)
++|+||++.++|+|||.|+|+|||+||+|++..|.++||+|++.+. .+|+|||||||||+||+||+|||+|+||++|+|
T Consensus 162 ~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G 240 (862)
T 1gax_A 162 HEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG-GFIEIATVRPETVFADQAIAVHPEDERYRHLLG 240 (862)
T ss_dssp TTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS-CCCEEEESCSGGGTTCCCEEECSSCCTTCSCTT
T ss_pred HCCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCC-CEEEEEeCCccccccceEEEECCCccHHHHHcC
Confidence 9999999999999999999999999999999999999999999765 799999999999999999999999999999999
Q ss_pred cEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceeccc--CccCCCCHHHHHH
Q 007761 298 MMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA--GLFRGLDRFEARK 375 (590)
Q Consensus 298 ~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~--~~~~G~~~~~a~~ 375 (590)
+++.+|++ ++.+||++++||++++|||+||+||+||++||++|++||||+++++|++|++++++ |.|.||++++||+
T Consensus 241 ~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~ 319 (862)
T 1gax_A 241 KRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARR 319 (862)
T ss_dssp CCCBCTTC-CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHH
T ss_pred CEEECCCC-CCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHH
Confidence 99999995 79999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCC
Q 007761 376 KLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKD 455 (590)
Q Consensus 376 ~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~D 455 (590)
.|+++|++.|++++.+++.|++|+|||||+||++++++||||+++++++++++++++++++|+|++.++++.+||++++|
T Consensus 320 ~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~D 399 (862)
T 1gax_A 320 KAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKD 399 (862)
T ss_dssp HHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred eeeeeecCcccccCeeEEcCCcccEEEeCChhHHHHH--hhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhh
Q 007761 456 WCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK--AHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD 533 (590)
Q Consensus 456 W~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~ 533 (590)
|||||||+||+|||+|+|+++ +...+.. .+++... ....+|. ..+.|++||||||||||+||+++++||++. ++
T Consensus 400 W~ISRqr~WG~pIP~w~~~~~-~~i~v~~-~~~l~~~~~~~~~~g~-~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~-~~ 475 (862)
T 1gax_A 400 WNISRQLWWGHQIPAWYCEDC-QAVNVPR-PERYLEDPTSCEACGS-PRLKRDEDVFDTWFSSALWPLSTLGWPEET-ED 475 (862)
T ss_dssp CCCBCCCSSSCCCCCEEETTT-CCEECCC-GGGTTCCCCSCTTTCC-SCEEECCCCBCHHHHHTSCTTGGGTTTSCC-HH
T ss_pred eeEecccCCCcccCceecCCC-CEEEEec-cccccccchhhhhcCc-hheecCCcccceeeccCCcchhhccCCCch-HH
Confidence 999999999999999999752 3333332 1111100 0012222 268999999999999999999999999765 78
Q ss_pred hhhcCCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 534 FKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 534 f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
|++|||+|++++|+||+|||+++|+++++.+.++.||++|++||+|+|.+|+|||||
T Consensus 476 ~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKS 532 (862)
T 1gax_A 476 LKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKS 532 (862)
T ss_dssp HHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTT
T ss_pred HHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=3.3e-123 Score=1084.69 Aligned_cols=516 Identities=26% Similarity=0.476 Sum_probs=469.8
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCCCCCC--CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 007761 60 PKTFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (590)
Q Consensus 60 ~~~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~ 136 (590)
|+++++ ++|++||++|++++.|+... .+++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||
T Consensus 15 pm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~Gw 94 (917)
T 1ffy_A 15 PMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGW 94 (917)
T ss_dssp CSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEE
T ss_pred CCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccC
Confidence 578898 89999999999999999864 346788999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHH
Q 007761 137 DHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRL 216 (590)
Q Consensus 137 D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 216 (590)
||||+|||.++++. |.++.++++++|++.|++|++++++.|+++|++||+++||+++++|+++.|.+.++++|.+|
T Consensus 95 D~hGlpiE~~a~k~----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l 170 (917)
T 1ffy_A 95 DTHGLPIEQALTKK----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEM 170 (917)
T ss_dssp BCCSHHHHHHHHHH----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHc----CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHH
Confidence 99999988776653 88898999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEcceeEEEeccCCcccCCccccccccCCeEEEEEEEecC------CCceEEEeecCCCccCCCceEEeCCC--
Q 007761 217 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG------RSDFLTIATTRPETLFGDVALAVNPQ-- 288 (590)
Q Consensus 217 ~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~------~~~~l~v~Tt~Petl~~~~~v~v~p~-- 288 (590)
+++|+||++.++|+|||.|+|+|||+||+|++..++++|++|++.+ .+.+++||||||||||||+||+|||+
T Consensus 171 ~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~ 250 (917)
T 1ffy_A 171 ADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELK 250 (917)
T ss_dssp HHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCC
T ss_pred HHcCCeEecccceeccCCCCcCcchhhhhcccccCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCc
Confidence 9999999999999999999999999999999999999999999875 36799999999999999999999998
Q ss_pred -------Cc-------------------ccc----------cccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCC
Q 007761 289 -------DE-------------------HYS----------QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPG 332 (590)
Q Consensus 289 -------~~-------------------~y~----------~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~ 332 (590)
++ +|+ +|+|+++.||+ +++++||++++||++++|||+||+||+
T Consensus 251 Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~pvi~~~~V~~~~GTG~V~~~Pa 329 (917)
T 1ffy_A 251 YGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF-LDRESLVINGDHVTTDAGTGCVHTAPG 329 (917)
T ss_dssp CCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCT-TCCSBCCCCCCSSCCSSSCSCCCBCTT
T ss_pred eEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCC-CCCeeeEEeccccccCCCCceeEeCCC
Confidence 32 343 68999999999 589999999999999999999999999
Q ss_pred CChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeee
Q 007761 333 HDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 412 (590)
Q Consensus 333 h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~ 412 (590)
||++||++|++||||++++||++|.++++.|.|+|+++++|++.|++.|+++|.+++.+++.|+||+|||||+|++++++
T Consensus 330 h~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t 409 (917)
T 1ffy_A 330 HGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRAT 409 (917)
T ss_dssp SCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEE
T ss_pred CCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCC-hh---H
Q 007761 413 KQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARN-AD---E 488 (590)
Q Consensus 413 ~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~-~~---~ 488 (590)
+||||++++++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|+. +..++..+ .. +
T Consensus 410 ~QWFi~~~~lr~~~l~~i~--~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~--g~~~~~~~~~~~i~~ 485 (917)
T 1ffy_A 410 PQWFASISKVRQDILDAIE--NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN--GEIIMTKETVNHVAD 485 (917)
T ss_dssp EEEEECHHHHHHHHHHHHH--TSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT--SCEECCHHHHHHHHH
T ss_pred cceEeeHHHHHHHHHHHHh--cCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC--CCEecCHHHHHHHHH
Confidence 9999999999999999998 599999999999999999999999999999999999999864 22222111 00 0
Q ss_pred HHH--------------Hhhhh--cC-CC-cceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechh
Q 007761 489 ALE--------------KAHQK--YG-KN-VEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDIL 550 (590)
Q Consensus 489 ~~~--------------~~~~~--~~-~~-~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil 550 (590)
..+ ..... +. ++ ..+.|++||||||||||+++++.+++. +++ .||+|+|++|+||+
T Consensus 486 ~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~----~~~--~~P~Dl~~~G~D~~ 559 (917)
T 1ffy_A 486 LFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETR----PEL--SFPADMYLEGSDQY 559 (917)
T ss_dssp HHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTS----TTC--CSSBSEEEEEGGGG
T ss_pred HhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCc----hhc--CCCceEEEEEeccc
Confidence 000 00001 10 11 368999999999999999999988753 223 38999999999999
Q ss_pred hHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 551 FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 551 ~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
|+||+++++.+..+.++.||++|++||||+|.+|+|||||
T Consensus 560 r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKS 599 (917)
T 1ffy_A 560 RGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKS 599 (917)
T ss_dssp TTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSS
T ss_pred ccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccc
Confidence 9999999999998889999999999999999999999999
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=7.6e-122 Score=1068.65 Aligned_cols=522 Identities=27% Similarity=0.466 Sum_probs=478.9
Q ss_pred CCCCh-HHHHHHHHHHHhcCCCCCCCC--CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761 61 KTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (590)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D 137 (590)
++|++ ++|++||++|++++.|+...+ +++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 67998 899999999999999998653 457889999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHcCCCc----cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHH
Q 007761 138 HAGIATQLVVEKMLAAEGIKR----VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAF 213 (590)
Q Consensus 138 ~~Gl~ie~~ve~~~~~~g~~~----~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f 213 (590)
+||+|||.++++.+ |.++ .++++++|.+.|++|++++.+.|+++|++||+++||+++++|+++.|.+.++++|
T Consensus 86 ~~Glpie~~a~k~l---~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f 162 (821)
T 1ile_A 86 THGLPVELEVEKKL---GLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSL 162 (821)
T ss_dssp CCHHHHHHHHHHHT---TCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHh---cccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHH
Confidence 99999887766532 5543 3578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEcceeEEEeccCCcccCCcccc--ccccCCeEEEEEEEecCC------CceEEEeecCCCccCCCceEEe
Q 007761 214 IRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAV 285 (590)
Q Consensus 214 ~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~~~~~~~~~~------~~~l~v~Tt~Petl~~~~~v~v 285 (590)
.+|+++|+||++.++|+|||.|+|+|||+||+ |++..++++||+|++.+. +.+|+|||||||||+||+||+|
T Consensus 163 ~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v 242 (821)
T 1ile_A 163 KNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAV 242 (821)
T ss_dssp HHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEE
T ss_pred HHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEE
Confidence 99999999999999999999999999999994 889999999999999874 7899999999999999999999
Q ss_pred CCCC---------ccc-----------------------ccccCcEEEccCCC--CCeeeEeecCccccCCCCCceecCC
Q 007761 286 NPQD---------EHY-----------------------SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLKISP 331 (590)
Q Consensus 286 ~p~~---------~~y-----------------------~~l~G~~~~~P~~~--~~~ipii~~~~V~~~~GTG~V~~~P 331 (590)
||++ ++| ++|+|+++.||+.. ++.+||++++||++++|||+||+||
T Consensus 243 ~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~P 322 (821)
T 1ile_A 243 HPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAP 322 (821)
T ss_dssp CTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCT
T ss_pred CCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecC
Confidence 9994 444 36889999999964 7999999999999999999999999
Q ss_pred CCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEee
Q 007761 332 GHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV 411 (590)
Q Consensus 332 ~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 411 (590)
+||++||++|++||||+++++|++|++++. | |+|+.+++|++.|+++|+++|++++.++++|++|+|||||+||++++
T Consensus 323 ah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~ 400 (821)
T 1ile_A 323 AFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYA 400 (821)
T ss_dssp TSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEE
T ss_pred CCCHHHHHHHHHcCCCcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEe
Confidence 999999999999999999999999999988 7 99999999999999999999999999999999999999999999999
Q ss_pred ecccccccchHHHHHHHHHHcCCceEecchH-HHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChhHHH
Q 007761 412 SKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEAL 490 (590)
Q Consensus 412 ~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~-~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~~~~ 490 (590)
++||||++++++++++++++ +++|+|++. ++++.+||++++||||||||+||+|||+|+|++ ++...+..+.+++.
T Consensus 401 ~~qWF~~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~-~~~~~vi~~~~~l~ 477 (821)
T 1ile_A 401 TESWFIKNTLFKDELIRNNQ--EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQA-CGKEEAIGSFQELK 477 (821)
T ss_dssp CCEEEECGGGGHHHHHHHHH--HSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESS-SSCCEECCSHHHHH
T ss_pred cchhhhchHHHHHHHHHHhc--CeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecC-CCcEEeeCcHHHHH
Confidence 99999999999999999987 489999998 468999999999999999999999999999976 34455656666653
Q ss_pred HHhhh------------------hcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhH
Q 007761 491 EKAHQ------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF 552 (590)
Q Consensus 491 ~~~~~------------------~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~ 552 (590)
+...+ .+.++..++|++||||||||||++|++.++||.+.+++|++|||+|++++|+||+||
T Consensus 478 ~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~ 557 (821)
T 1ile_A 478 ARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRG 557 (821)
T ss_dssp HHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGT
T ss_pred hhccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCcccccchhhhhcc
Confidence 31110 112345789999999999999999999999998766789999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 553 WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 553 W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
|++++++++..+.++.||++|++||+|++.+|+|||||
T Consensus 558 w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS 595 (821)
T 1ile_A 558 WFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKS 595 (821)
T ss_dssp HHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTT
T ss_pred HHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCcc
Confidence 99999999998889999999999999999999999999
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-104 Score=936.61 Aligned_cols=516 Identities=23% Similarity=0.378 Sum_probs=420.9
Q ss_pred CCCCh-HHHHHHHHHHHhcCCCCCCCCCCC---CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC
Q 007761 61 KTFDF-TSEERIYNWWESQGYFKPNFERGS---DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (590)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~---k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~ 136 (590)
+.||+ ++|++||++|+++++|++..+ ++ ++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCcc-ccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 56887 899999999999999998765 33 78999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHH-----------HcCCCccccCHHHH--HHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCC-
Q 007761 137 DHAGIATQLVVEKMLA-----------AEGIKRVELSRDEF--TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD- 202 (590)
Q Consensus 137 D~~Gl~ie~~ve~~~~-----------~~g~~~~~~~~e~f--~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~- 202 (590)
||||+|++.++++... ..|++ ++++ ...|++|++++.+.++++|++||+++||+++++|++
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~ 155 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVP-----EEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSL 155 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCC-----HHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTT
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCC
Confidence 9999999887765321 01332 3332 236999999999999999999999999999999999
Q ss_pred -hhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccccCCe--EEEEEEEecCC--CceEEEeecCCCcc
Q 007761 203 -EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGT--LYYIKYRVAGR--SDFLTIATTRPETL 277 (590)
Q Consensus 203 -~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~--~~~~~~~~~~~--~~~l~v~Tt~Petl 277 (590)
+.|.++++++|.+|+++|+||++.++|+|||.|+|+|||+||++++..+. .++|+|++.+. +.+|+|||||||||
T Consensus 156 np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl 235 (967)
T 1wz2_A 156 FPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETV 235 (967)
T ss_dssp SHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGG
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCCCCceEEEEEcCCchHh
Confidence 99999999999999999999999999999999999999999999775543 57899998764 37899999999999
Q ss_pred CCCceEEeCCC---------C----cc------------c-------------ccccCcEEEccCCCCCeeeEeecCccc
Q 007761 278 FGDVALAVNPQ---------D----EH------------Y-------------SQFIGMMAIVPMTYGRHVPIISDKYVD 319 (590)
Q Consensus 278 ~~~~~v~v~p~---------~----~~------------y-------------~~l~G~~~~~P~~~~~~ipii~~~~V~ 319 (590)
+||+||+|||+ + ++ | ++|+|+++.||++ ++++||++++||+
T Consensus 236 ~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~-~~~ipi~~~~~V~ 314 (967)
T 1wz2_A 236 YGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVS-GDEVIILPAEFVD 314 (967)
T ss_dssp GGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSS-SCEEEEEECSSCC
T ss_pred hhheEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCC-CCceEEEeccccc
Confidence 99999999999 3 31 2 2689999999995 7899999999999
Q ss_pred cCCCCCceecCCCCChhhHHH----------HHHhCCC--------eeEeecC---------------------------
Q 007761 320 KEFGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK--------------------------- 354 (590)
Q Consensus 320 ~~~GTG~V~~~P~h~~~D~~~----------~~~~~l~--------~~~~i~~--------------------------- 354 (590)
+++|||+||+||+||++||++ |++|||| ++++|+.
T Consensus 315 ~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~ 394 (967)
T 1wz2_A 315 PDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLE 394 (967)
T ss_dssp SSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHH
T ss_pred CCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHH
Confidence 999999999999999999985 5788977 6766531
Q ss_pred ------------CCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEe-eecccccccch
Q 007761 355 ------------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTMEP 421 (590)
Q Consensus 355 ------------~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~-~~~QWFi~~~~ 421 (590)
+|+|+ +|.|+|+.+++|++.|+++|+++|+++..+.+.| +|+|||||+|++++ +++||||++++
T Consensus 395 ~a~~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~ 471 (967)
T 1wz2_A 395 QATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGN 471 (967)
T ss_dssp HHTTHHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCC
T ss_pred HHHHHhhhccccCceEe--ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCc
Confidence 57776 7899999999999999999999999987665544 79999999999999 69999999994
Q ss_pred --HHHHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCe---eEEcCCccc--EEEeCChhHHHHHhh
Q 007761 422 --LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAH 494 (590)
Q Consensus 422 --~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi---~~~~~~~~~--~~~~~~~~~~~~~~~ 494 (590)
+++.++++++ +++|+|++.++.+.+||++++||||||||+||+|||+ |.++..+++ |+......+....+.
T Consensus 472 ~~~k~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~ 549 (967)
T 1wz2_A 472 PEWKEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLR 549 (967)
T ss_dssp TTHHHHHHHHHT--TSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhh--ccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHH
Confidence 9999999995 5899999999999999999999999999999999995 555321111 111111111111111
Q ss_pred hhcCCCcceeecCceeEEeecC----Cch-hh-hhcCCCCCC----hhhhhhcCCccEEEEeechhhHHHHHHHHhhccc
Q 007761 495 QKYGKNVEIYQDPDVLDTWFSS----ALW-PF-STLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF 564 (590)
Q Consensus 495 ~~~~~~~~~~~~~dvlDvWfdS----~~~-~~-~~~~~~~~~----~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l 564 (590)
...+.+.. .-..+++|+||.+ |.+ ++ ...|||... +++|++|||+|++++|+||+++|...+++++..+
T Consensus 550 ~~~g~~~~-~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~ 628 (967)
T 1wz2_A 550 QEGKLDPE-KLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAI 628 (967)
T ss_dssp HTTCCCGG-GCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHH
T ss_pred HhcCCChH-HcCcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHH
Confidence 11111100 1134788988864 221 11 135666542 3679999999999999999999877787777777
Q ss_pred cCCCCC-cEEEEeceEEeCCCCccccC
Q 007761 565 TGSVPF-SHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 565 ~~~~Pf-~~v~~hG~v~d~~G~KMSKS 590 (590)
.++.|| +++++||||++ +|+|||||
T Consensus 629 ~~~~~~pk~v~~~G~v~~-~G~KMSKS 654 (967)
T 1wz2_A 629 FREEHWPKGIAVNGFGTL-EGQKMSKS 654 (967)
T ss_dssp SCSTTSCCCEEEECCEEE-SSSCCCTT
T ss_pred cCcccccceEEEeeEEee-CCEEcccc
Confidence 776555 99999999997 99999999
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=2.4e-101 Score=891.12 Aligned_cols=447 Identities=26% Similarity=0.449 Sum_probs=367.9
Q ss_pred CCCCCCh-HHHHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761 59 LPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (590)
Q Consensus 59 ~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D 137 (590)
-++.|++ ++|++||++|++++.|++..+.++++|+++++||||||.|||||+|+++++|+++||+||+||+|++++|||
T Consensus 21 m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D 100 (880)
T 4arc_A 21 MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWD 100 (880)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEEC
T ss_pred ccccCChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCcc
Confidence 3678998 899999999999999998876677889999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHH
Q 007761 138 HAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLH 217 (590)
Q Consensus 138 ~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 217 (590)
+||+|++. ++.+.|.++. +|+.++++.|+++|++||+++||+++++|+++.|.+.++++|.+|+
T Consensus 101 ~~Glpie~----~a~~~g~~p~------------~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ 164 (880)
T 4arc_A 101 AFGLPAEG----AAVKNNTAPA------------PWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELY 164 (880)
T ss_dssp CCSTHHHH----HHHHTTSCHH------------HHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHH
T ss_pred ccCcHHHH----HHHHcCCCHH------------HHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHH
Confidence 99999654 4566777664 6788999999999999999999999999999999999999999999
Q ss_pred hcCceEEcceeEEEeccCCcccCCcccc------------cccc------------------------------------
Q 007761 218 EKGLIYQGSYMVNWSPNLQTAVSDLEVE------------YSEE------------------------------------ 249 (590)
Q Consensus 218 ~kG~iY~~~~~v~w~p~~~t~lsd~Ev~------------~~~~------------------------------------ 249 (590)
++|+||+++++|+|||.|+|+|||+||+ +++.
T Consensus 165 ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wi 244 (880)
T 4arc_A 165 KKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWI 244 (880)
T ss_dssp HTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHH
T ss_pred HCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhh
Confidence 9999999999999999999999997664 2221
Q ss_pred -CCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCccccc---------------------------------c
Q 007761 250 -PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ---------------------------------F 295 (590)
Q Consensus 250 -~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~---------------------------------l 295 (590)
.+..++|+|++.+.+.+|+|||||||||+|+++|+|||+++++.. +
T Consensus 245 g~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 324 (880)
T 4arc_A 245 GRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVD 324 (880)
T ss_dssp CEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CEEE
T ss_pred ccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccc
Confidence 123578999998888899999999999999999999999997743 3
Q ss_pred cCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecC---------------CCceec
Q 007761 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK---------------DGTLNE 360 (590)
Q Consensus 296 ~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~---------------~G~~~~ 360 (590)
+|++++||+ .++++||+.++||++++|||+||+|||||++||++|++||||++++|+. +|.+.
T Consensus 325 ~g~~~~~P~-~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~- 402 (880)
T 4arc_A 325 TGFKAVHPL-TGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF- 402 (880)
T ss_dssp EEEEEECTT-TCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBC-
T ss_pred cCcEEecCC-CCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceee-
Confidence 689999999 5799999999999999999999999999999999999999999998852 34443
Q ss_pred ccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecc
Q 007761 361 VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPE 440 (590)
Q Consensus 361 ~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~ 440 (590)
++|.|+||++++|+++|++.|+++|++.+. +++
T Consensus 403 ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~--------------------------------------------v~y--- 435 (880)
T 4arc_A 403 NSGEFNGLDHEAAFNAIADKLTAMGVGERK--------------------------------------------VNY--- 435 (880)
T ss_dssp SSGGGTTCCHHHHHHHHHHHHHHTTSEEEE--------------------------------------------EEE---
T ss_pred cCcccCCCCHHHHHHHHHHHHHHcCCccee--------------------------------------------EEE---
Confidence 678999999999999999999999996443 111
Q ss_pred hHHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCCh--------------hHHHHHhhh----hcCCCcc
Q 007761 441 RFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA--------------DEALEKAHQ----KYGKNVE 502 (590)
Q Consensus 441 ~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~ 502 (590)
+++|||||||||||+|||+|+|+++ +...++... ..++..... .|+ +..
T Consensus 436 -----------rlrDW~iSRQRyWG~PIPi~~c~~c-g~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cp-g~~ 502 (880)
T 4arc_A 436 -----------RLRDWGVSRQRYWGAPIPMVTLEDG-TVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVN-GMP 502 (880)
T ss_dssp -----------SCCCEECEESCSSSCBCCEEEETTS-CEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESS-SSE
T ss_pred -----------EcccceeeeeeccCCcceEEEECCC-CeEeCChHHCccccchhcccCCCCCchHhCccceeeccC-CCc
Confidence 5789999999999999999999753 222222111 023333322 222 557
Q ss_pred eeecCceeEEeecCCchhhhhcCCCCCC-----hhhhhhcCCccEEEEeec--hhhHHHHHHH-----HhhccccCCCCC
Q 007761 503 IYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHD--ILFFWVARMV-----MMGIEFTGSVPF 570 (590)
Q Consensus 503 ~~~~~dvlDvWfdS~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~D--il~~W~~~~~-----~~~~~l~~~~Pf 570 (590)
++||+|||||||||| |||++++||+++ ++.+++|||+|+|++|.| |+|+|++++. .+++ +.+++||
T Consensus 503 ~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~-~~~~ePF 580 (880)
T 4arc_A 503 ALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM-VNSDEPA 580 (880)
T ss_dssp EEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTS-CCCSCSE
T ss_pred ceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhc-ccCCCCh
Confidence 999999999999998 999999999864 467889999999999966 7888887753 3444 4679999
Q ss_pred cEEEEeceEE-------eCCCC
Q 007761 571 SHVYLHGLIR-------DSQVK 585 (590)
Q Consensus 571 ~~v~~hG~v~-------d~~G~ 585 (590)
++|++||||+ |.+|+
T Consensus 581 k~ll~qGmVl~~~~~~~d~~G~ 602 (880)
T 4arc_A 581 KQLLCQGMVLADAFYYVGENGE 602 (880)
T ss_dssp EEEECCCCEEEEEEEEECTTSC
T ss_pred HHeEEeceEeecceeccccCCc
Confidence 9999999997 88998
No 6
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.7e-100 Score=886.08 Aligned_cols=520 Identities=22% Similarity=0.366 Sum_probs=418.3
Q ss_pred CCCCh-HHHHHHHHHHHhcCCCCCCCCC--CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCC
Q 007761 61 KTFDF-TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (590)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~--~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D 137 (590)
+.|++ ++|++||++|+++++|+...+. ++++|+|++|||||||+|||||+++++++|+++||+||+||+|++++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 56887 8999999999999999987653 36789999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHcCCCc--------cccCHHHH--HHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCC--hhH
Q 007761 138 HAGIATQLVVEKMLAAEGIKR--------VELSRDEF--TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQL 205 (590)
Q Consensus 138 ~~Gl~ie~~ve~~~~~~g~~~--------~~~~~e~f--~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~--~~~ 205 (590)
+||+|++.++++... +..+ ..+.++++ ...|++|++++.+.|+++|++||+++||+++++|++ +.|
T Consensus 82 ~~G~pie~~a~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~ 159 (810)
T 1wkb_A 82 ITGSPIVGIAERIKN--RDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPF 159 (810)
T ss_dssp CCBSHHHHHHHHHHT--TCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHH
T ss_pred CCCChHHHHHHHhcc--cCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHH
Confidence 999999887664320 0000 01223332 236899999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccccCCe--EEEEEEEecCCC--ceEEEeecCCCccCCCc
Q 007761 206 SRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGT--LYYIKYRVAGRS--DFLTIATTRPETLFGDV 281 (590)
Q Consensus 206 ~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~~~--~~~~~~~~~~~~--~~l~v~Tt~Petl~~~~ 281 (590)
.+.++++|.+|+++|+||++.++|+|||.|+|+|||+||++++.... .++|+|++.+.+ .+|+|||||||||+||+
T Consensus 160 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~ 239 (810)
T 1wkb_A 160 SKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVT 239 (810)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCC
T ss_pred HHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhh
Confidence 99999999999999999999999999999999999999999776554 467899987643 78999999999999999
Q ss_pred eEEeCCCCcc-------------------------c-------------ccccCcEEEccCCCCCeeeEeecCccccCCC
Q 007761 282 ALAVNPQDEH-------------------------Y-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFG 323 (590)
Q Consensus 282 ~v~v~p~~~~-------------------------y-------------~~l~G~~~~~P~~~~~~ipii~~~~V~~~~G 323 (590)
||+|||++++ | .+|+|+++.||+ .++++||++++||++++|
T Consensus 240 av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~ipi~~~~~V~~~~G 318 (810)
T 1wkb_A 240 NMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPV-SGDEVIILPAEFVDPDNA 318 (810)
T ss_dssp EEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSS-SCCEEEEEECTTSCTTST
T ss_pred EEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCC-CCCeeEEEecCcccCCCC
Confidence 9999999421 2 258999999999 478999999999999999
Q ss_pred CCceecCCCCChhhHHH----------HHHhCCC--------eeEeecC-------------------------------
Q 007761 324 TGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK------------------------------- 354 (590)
Q Consensus 324 TG~V~~~P~h~~~D~~~----------~~~~~l~--------~~~~i~~------------------------------- 354 (590)
||+||+||+||++||++ |++|||| ++++|+.
T Consensus 319 TG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~ 398 (810)
T 1wkb_A 319 TGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATK 398 (810)
T ss_dssp TSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHH
T ss_pred ceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhh
Confidence 99999999999999986 4678887 6777632
Q ss_pred --------CCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEe-eecccccccch--HH
Q 007761 355 --------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTMEP--LA 423 (590)
Q Consensus 355 --------~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~-~~~QWFi~~~~--~~ 423 (590)
+|+++ +|.|+|+.+.+|++.|++.|+++|+++..+.+.| +|+|+|||+|++++ +++||||++++ ++
T Consensus 399 ~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~ 475 (810)
T 1wkb_A 399 TIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWK 475 (810)
T ss_dssp HHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCHHHH
T ss_pred hhhhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecChHHHH
Confidence 57776 7899999999999999999999999988777655 79999999999999 79999999995 99
Q ss_pred HHHHHHHHcCCceEecchHHHHHHHHHhcCCCeeeeeecCcccccCe---eEEcCCccc--EEEeCChhHHHHHhhhhcC
Q 007761 424 EKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKYG 498 (590)
Q Consensus 424 ~~~~~~i~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIPi---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 498 (590)
++++++++ +++|+|++.++.+.+||++++||||||||+||+|||+ |.++...++ |+...........+....+
T Consensus 476 ~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~ 553 (810)
T 1wkb_A 476 EKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGK 553 (810)
T ss_dssp HHHHHHHH--TSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhc--ccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhcC
Confidence 99999996 5899999999999999999999999999999999994 555432221 1100000011110111111
Q ss_pred CCcceeecCceeEEeecC----Cchh--hhhcCCCCCC----hhhhhhcCCccEEEEeechhhHHHHHHHHhhccccCCC
Q 007761 499 KNVEIYQDPDVLDTWFSS----ALWP--FSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (590)
Q Consensus 499 ~~~~~~~~~dvlDvWfdS----~~~~--~~~~~~~~~~----~~~f~~~~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~ 568 (590)
.+.. .-..+++|+||.+ |.+. ....|||... +++|++|||+|+|++|+||+++|...+++.+..+.+..
T Consensus 554 ~~~~-~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~ 632 (810)
T 1wkb_A 554 LDPE-KLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREE 632 (810)
T ss_dssp CCGG-GCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGG
T ss_pred CCHH-HcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHcCcc
Confidence 1100 1134788888853 2211 1134565431 35789999999999999999998777777777666654
Q ss_pred CC-cEEEEeceEEeCCCCccccC
Q 007761 569 PF-SHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 569 Pf-~~v~~hG~v~d~~G~KMSKS 590 (590)
|+ +++++||||++ +|+|||||
T Consensus 633 ~~pk~v~~~G~v~~-~G~KMSKS 654 (810)
T 1wkb_A 633 HWPKGIAVNGFGTL-EGQKMSKS 654 (810)
T ss_dssp GSCCEEEEECCEEE-TTBCCCTT
T ss_pred ccccEEEEEeEEEe-CCeehhhc
Confidence 44 99999999996 89999999
No 7
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=6.2e-100 Score=885.18 Aligned_cols=444 Identities=28% Similarity=0.478 Sum_probs=372.9
Q ss_pred CCCh-HHHHHHHHHHHhcCCCCCCC-CCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCC
Q 007761 62 TFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA 139 (590)
Q Consensus 62 ~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~ 139 (590)
+|++ ++|++||++|++++.|+... +.++++|+++++||||||.|||||+|+++++|+++||+||+||+|++++|||+|
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~ 82 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcc
Confidence 6887 89999999999999999887 556677999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhc
Q 007761 140 GIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEK 219 (590)
Q Consensus 140 Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~k 219 (590)
|+||+.. +.+.|.++ ++|++++++.|+++|++||+++||+++++|++++|.+.++++|.+|+++
T Consensus 83 Glpie~~----a~k~g~~~------------~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 146 (878)
T 2v0c_A 83 GLPAENA----ALKFGVHP------------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEK 146 (878)
T ss_dssp SHHHHHH----HHHTTCCH------------HHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHH----HHHcCCCH------------HHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHC
Confidence 9996554 45567665 3788999999999999999999999999999999999999999999999
Q ss_pred CceEEcceeEEEeccCCcccCCccccccccC-------------------------------------------------
Q 007761 220 GLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP------------------------------------------------- 250 (590)
Q Consensus 220 G~iY~~~~~v~w~p~~~t~lsd~Ev~~~~~~------------------------------------------------- 250 (590)
|+||++.++|+|||.|+|+|||+||+++.+.
T Consensus 147 GliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~ 226 (878)
T 2v0c_A 147 GLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGR 226 (878)
T ss_dssp TCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCE
T ss_pred CCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhcc
Confidence 9999999999999999999999999754211
Q ss_pred CeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCccccc-----------------------------------c
Q 007761 251 GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ-----------------------------------F 295 (590)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~-----------------------------------l 295 (590)
+..++++|++.+.+.+|+|||||||||+|++||+|||+++++.. |
T Consensus 227 s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (878)
T 2v0c_A 227 SEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVF 306 (878)
T ss_dssp EEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEE
T ss_pred ccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEe
Confidence 13467889988878999999999999999999999999987643 3
Q ss_pred cCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCC---------cee-----cc
Q 007761 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDG---------TLN-----EV 361 (590)
Q Consensus 296 ~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G---------~~~-----~~ 361 (590)
+|+++.||+ .++++||+.++||++++|||+||+|||||++||++|++||||++++|+.+| .++ .+
T Consensus 307 ~g~~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~n 385 (878)
T 2v0c_A 307 LGAYALNPA-TGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVN 385 (878)
T ss_dssp EEEEEECTT-TCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECS
T ss_pred cCcEEECCC-CCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEec
Confidence 789999999 579999999999999999999999999999999999999999999998522 232 25
Q ss_pred cCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecch
Q 007761 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPER 441 (590)
Q Consensus 362 ~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~ 441 (590)
+|.|+||++++|+++|++.|+++|++.+ + +.+
T Consensus 386 s~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------~----------------------------v~~---- 417 (878)
T 2v0c_A 386 SGPFDGTESEEGKRKVIAWLEEKGLGKG----------------R----------------------------VTY---- 417 (878)
T ss_dssp SGGGTTCBHHHHHHHHHHHHHHHTSEEE----------------E----------------------------EEE----
T ss_pred CCCCCCcCHHHHHHHHHHHHHHCCCCCC----------------c----------------------------eEE----
Confidence 7889999999999999999999999522 1 111
Q ss_pred HHHHHHHHHhcCCCeeeeeecCcccccCeeEEcCCcccEEEeCC------------------hhHHHHHhhh----hc-C
Q 007761 442 FEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARN------------------ADEALEKAHQ----KY-G 498 (590)
Q Consensus 442 ~~~~~~~~l~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~------------------~~~~~~~~~~----~~-~ 498 (590)
+++|||||||||||+|||+|+|+++ +...+... ..+++..+.. .| .
T Consensus 418 ----------rlrDW~ISRQR~WG~PIPi~~~~~~-~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~ 486 (878)
T 2v0c_A 418 ----------RLRDWLISRQRYWGTPIPMVHCEAC-GVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPK 486 (878)
T ss_dssp ----------SCCCEECEESCSSSEECCEEEETTT-EEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTT
T ss_pred ----------ecccchhhcccccCCcccEEEECCC-CeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCC
Confidence 5789999999999999999999752 22222110 0111111111 22 2
Q ss_pred CCcceeecCceeEEeecCCchhhhhcCCCCCC-----hhhhhhcCCccEEEEeec--hhhHHHHHHHHh---hcc-ccCC
Q 007761 499 KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHD--ILFFWVARMVMM---GIE-FTGS 567 (590)
Q Consensus 499 ~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~D--il~~W~~~~~~~---~~~-l~~~ 567 (590)
++..++|++|||||||||| ||++.++||+++ ++++++|||+|+|++|+| ++|+|++++.+. ++. +.++
T Consensus 487 cg~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~ 565 (878)
T 2v0c_A 487 CGGPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVE 565 (878)
T ss_dssp TCSEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCS
T ss_pred CCCcceecccccccccccc-chhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3457999999999999998 999999999873 467899999999999976 567777776442 222 5689
Q ss_pred CCCcEEEEeceEEeC
Q 007761 568 VPFSHVYLHGLIRDS 582 (590)
Q Consensus 568 ~Pf~~v~~hG~v~d~ 582 (590)
+||++|++||||+|.
T Consensus 566 ~Pfk~l~~~G~vl~~ 580 (878)
T 2v0c_A 566 EPFQGLFTQGMVLAW 580 (878)
T ss_dssp CSBSBEECCCCEEEE
T ss_pred CchHhheecceEecc
Confidence 999999999999984
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=5.4e-63 Score=566.00 Aligned_cols=326 Identities=22% Similarity=0.318 Sum_probs=272.4
Q ss_pred CCEEEeCCCCCCCCCCCchhhHH-HHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~-~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~ 168 (590)
++|+|++|||||||.|||||+++ ++++|+++||+||+||+|++++|||+||+||+.++ .++|+++.
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A----~k~G~~p~--------- 68 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRA----LKEGRSPR--------- 68 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHH----HHHTCCHH---------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHH----HHcCCCHH---------
Confidence 57999999999999999999999 99999999999999999999999999999976554 45588765
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccc
Q 007761 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (590)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (590)
+|++++.+.+++++++|||++||. +.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+|+|.+|+
T Consensus 69 ---e~~~~~~~~~~~~~~~lgis~D~~--~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~--- 140 (722)
T 1rqg_A 69 ---EIVDEFHEQIKITFQRAKISFDFF--GRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI--- 140 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCCCSEE--EETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC---
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCCCC--eeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcc---
Confidence 678999999999999999999953 449999999999999999999999999999999999999999997652
Q ss_pred cCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCcee
Q 007761 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~ 328 (590)
||
T Consensus 141 --------------------------------------------------------------------------gt---- 142 (722)
T 1rqg_A 141 --------------------------------------------------------------------------GT---- 142 (722)
T ss_dssp --------------------------------------------------------------------------SB----
T ss_pred --------------------------------------------------------------------------cc----
Confidence 22
Q ss_pred cCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeE
Q 007761 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (590)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (590)
||.|+.+ +..|.+|++||.. .++.++.+|+|||||++++
T Consensus 143 -cP~c~~~----------------~~~Gd~c~~~G~~------------------------l~~~~l~~p~~~r~g~~v~ 181 (722)
T 1rqg_A 143 -CPYCGAE----------------DQKGDQCEVCGRP------------------------LTPEILINPRCAICGRPIS 181 (722)
T ss_dssp -CSSSCCS----------------CCCTTTCSSSCCC------------------------CCTTSSBSCBCTTTCCBCE
T ss_pred -cCccCCc----------------cCCcchhhhcccc------------------------cChhhccCCcccCCCcEeE
Confidence 5665553 3467777766642 1345677899999999999
Q ss_pred EeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHH-hcCCCeeeeeecCcccccCeeEEcCCcccEEEeCChh
Q 007761 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (590)
Q Consensus 409 ~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l-~~l~DW~ISRqr~WG~pIPi~~~~~~~~~~~~~~~~~ 487 (590)
++.++||||++++++++++++++++. +|++.++++.+|| ++++|||||||++||+|||+|++ +
T Consensus 182 ~~~~~qwF~~l~~~~~~l~~~~~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~-g------------ 245 (722)
T 1rqg_A 182 FRDSAHYYIKMQDFAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE-D------------ 245 (722)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHSSC---CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS-S------------
T ss_pred EEEeccEEEEhHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHCCCcccceeccccCccccCcccc-C------------
Confidence 99999999999999999999998643 5999999999999 68999999999999999998642 1
Q ss_pred HHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcC-CCCC--ChhhhhhcCCc-c-----EEEEeechhhH----HH
Q 007761 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLG-WPDV--SADDFKKFYPT-T-----MLETGHDILFF----WV 554 (590)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~-~~~~--~~~~f~~~~P~-d-----~~~~G~Dil~~----W~ 554 (590)
-+.+|+|||||+.+.|++..+ |+.. ..++|++|||+ | ++++|+||++| |+
T Consensus 246 -----------------~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wp 308 (722)
T 1rqg_A 246 -----------------MKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWP 308 (722)
T ss_dssp -----------------STTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHH
T ss_pred -----------------CCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhH
Confidence 125799999999988876553 3221 11358777873 3 89999999987 88
Q ss_pred HHHHHhhcc-----c-cCCCCCcEEEEeceEEeCCCCccccC
Q 007761 555 ARMVMMGIE-----F-TGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 555 ~~~~~~~~~-----l-~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+.+++.+.. + ...+| ++|++||||++ +|+|||||
T Consensus 309 A~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS 348 (722)
T 1rqg_A 309 AFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTS 348 (722)
T ss_dssp HHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTT
T ss_pred HHHhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeee
Confidence 876555420 1 12678 99999999997 99999999
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=2.6e-61 Score=538.15 Aligned_cols=304 Identities=21% Similarity=0.313 Sum_probs=260.5
Q ss_pred CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHH
Q 007761 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (590)
Q Consensus 87 ~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f 166 (590)
+..|+|+||+|+|||||.||||||++++++|+++||+||+||+|++++|+||||+||+ ..|+++|+++.
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie----~~a~k~g~~~~------- 74 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVA----EAAKQKQVSPY------- 74 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHH----HHHHHTTSCHH-------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHH----HHHHHcCCCHH-------
Confidence 4578899999999999999999999999999999999999999999999999999954 45667788875
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccc
Q 007761 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (590)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~ 246 (590)
+|++++.+.+++++++|||++||.+ .|+++.|.+.|+++|.+|+++|+||++.++|+|||+|+|+|+|.||+.
T Consensus 75 -----e~~~~~~~~~~~~~~~lgi~~D~~~--~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~ 147 (542)
T 3u1f_A 75 -----DFTTAVAGEFKKCFEQMDYSIDYFI--RTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITD 147 (542)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCCCSEEE--ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred -----HHHHHHHHHHHHHHHHhCCccCcCc--cCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhc
Confidence 5778999999999999999999743 399999999999999999999999999999999999999999998841
Q ss_pred cccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCc
Q 007761 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (590)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~ 326 (590)
.
T Consensus 148 ~------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 148 G------------------------------------------------------------------------------- 148 (542)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred eecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCce
Q 007761 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (590)
Q Consensus 327 V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (590)
| +.+|. .+++|+|||++
T Consensus 149 ---~----------------------~~~g~--------------------------------------~~~~~~~sg~~ 165 (542)
T 3u1f_A 149 ---V----------------------DKDGN--------------------------------------PCKVSLESGHV 165 (542)
T ss_dssp ---E----------------------CTTSC--------------------------------------EEEEETTTCCB
T ss_pred ---c----------------------cccCc--------------------------------------cccccCCCCCc
Confidence 0 11121 23679999999
Q ss_pred eEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHhc-CCCeeeeeecC----cccccCeeEEcCCcccEE
Q 007761 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSN-IKDWCISRQLW----WGHRIPVWYIVGKEEEYI 481 (590)
Q Consensus 407 v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~~-l~DW~ISRqr~----WG~pIPi~~~~~~~~~~~ 481 (590)
++++.++|||+++++++++++++++++...+.|+..++.+.+|+++ ++||||||||+ ||+|||..
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~---------- 235 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGN---------- 235 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTE----------
T ss_pred ceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCC----------
Confidence 9999999999999999999999999889999999999999999985 99999999998 99999931
Q ss_pred EeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCC---------hhhhhhcCCccEEEEeechhhH
Q 007761 482 VARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---------ADDFKKFYPTTMLETGHDILFF 552 (590)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~---------~~~f~~~~P~d~~~~G~Dil~~ 552 (590)
+..++++|||+...|+...++..+. .......||+|++++|+||++|
T Consensus 236 ------------------------~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~f 291 (542)
T 3u1f_A 236 ------------------------PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKF 291 (542)
T ss_dssp ------------------------EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHH
T ss_pred ------------------------cCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEeccccccc
Confidence 2468899999988777765433221 1122345899999999999998
Q ss_pred ----HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 553 ----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 553 ----W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
|++++++.+. .|++.|++||++. .+|+|||||
T Consensus 292 h~~~~~a~l~~~g~-----~~~~~v~~hg~l~-~~G~KMSKS 327 (542)
T 3u1f_A 292 HAIYWPAFLLSAGL-----PLPKKIVAHGWWT-KDRKKISKS 327 (542)
T ss_dssp HHTHHHHHHHHHTC-----CCCSCEEEECCCE-ETTBCCBTT
T ss_pred ccchhHHHHHhhcc-----cccceecccccee-cCCceeccc
Confidence 7777776654 4679999999975 689999999
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.6e-59 Score=521.55 Aligned_cols=298 Identities=25% Similarity=0.416 Sum_probs=260.8
Q ss_pred CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHH
Q 007761 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (590)
Q Consensus 87 ~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f 166 (590)
+++++|++++|+|||||+|||||+|+++++|+++||+||+||+|++++|+|+||++|+. .|++.|.++.
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~----~a~~~g~~~~------- 77 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAE----TAAKEGIPAA------- 77 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHH----HHHHHTSCHH-------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHH----HHHHcCCCHH-------
Confidence 35677999999999999999999999999999999999999999999999999999654 4555677764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCcccc
Q 007761 167 TKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 245 (590)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~ 245 (590)
++++++.+.+++++++|||++| |.+ |+++.|.+.++++|++|+++|+||+++++|+|||.|+|++++.|++
T Consensus 78 -----~~~~~~~~~~~~~~~~lgi~~d~~~~---t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~ 149 (524)
T 2x1l_A 78 -----ELARRNSDVFQRLQEKLNISFDRFIR---TSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETT 149 (524)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCCSEEEE---TTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred -----HHHHHHHHHHHHHHHHcCCcCCCCee---cCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhc
Confidence 5678899999999999999998 554 8999999999999999999999999999999999999999998874
Q ss_pred ccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCC
Q 007761 246 YSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTG 325 (590)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG 325 (590)
+. +
T Consensus 150 ~g----------------------------------------------------------------------------~- 152 (524)
T 2x1l_A 150 EQ----------------------------------------------------------------------------P- 152 (524)
T ss_dssp EC----------------------------------------------------------------------------T-
T ss_pred cC----------------------------------------------------------------------------C-
Confidence 11 0
Q ss_pred ceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccC-CCC
Q 007761 326 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ-RGG 404 (590)
Q Consensus 326 ~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~-r~~ 404 (590)
+| +.|+ |||
T Consensus 153 -----------------------------~G-----------------------------------------~~c~~~~g 162 (524)
T 2x1l_A 153 -----------------------------DG-----------------------------------------TRIATETG 162 (524)
T ss_dssp -----------------------------TS-----------------------------------------CEEETTTC
T ss_pred -----------------------------CC-----------------------------------------CccccccC
Confidence 01 1377 999
Q ss_pred ceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeeeecC-cccccCeeEEcCCcccEEE
Q 007761 405 EVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLW-WGHRIPVWYIVGKEEEYIV 482 (590)
Q Consensus 405 ~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISRqr~-WG~pIPi~~~~~~~~~~~~ 482 (590)
++++.+.++|||+++++++++++++++++...+.|+..++.+.+|+. +++||||||||. ||+||| |.
T Consensus 163 ~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP-~~---------- 231 (524)
T 2x1l_A 163 APVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP-DH---------- 231 (524)
T ss_dssp CBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET-TE----------
T ss_pred CcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC-CC----------
Confidence 99999999999999999999999999865566899999999999995 899999999985 999999 21
Q ss_pred eCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhH----HHHHHH
Q 007761 483 ARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMV 558 (590)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~----W~~~~~ 558 (590)
+.+|+||||||+++|++..+||.+....|+++||+|++++|+||++| |++.+.
T Consensus 232 -----------------------~~~~~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~ 288 (524)
T 2x1l_A 232 -----------------------PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLM 288 (524)
T ss_dssp -----------------------EEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHH
T ss_pred -----------------------CCCEEEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHH
Confidence 24799999999999999999998765689999999999999999987 666665
Q ss_pred HhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 559 MMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 559 ~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+++ ..||+++++||+|++ +|+|||||
T Consensus 289 ~~g-----~~~~~~v~~hG~v~~-~G~KMSKS 314 (524)
T 2x1l_A 289 SAG-----LPLPKRIFAHGWLLN-RGEKMSKS 314 (524)
T ss_dssp HHT-----CCCCSCEEEECCEEE-CSCSEETT
T ss_pred HCC-----CCCCcEEEECcEEEe-CCcccCCc
Confidence 544 357899999999997 89999998
No 11
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=2.6e-59 Score=521.00 Aligned_cols=295 Identities=25% Similarity=0.412 Sum_probs=255.5
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 007761 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~ 168 (590)
+++|+|+.|+|||||+|||||+|+++++|+++||+|++||+|.+++|+|+||.+|+ ..+.+.|.++.
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~----~~a~~~g~~~~--------- 90 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKML----QSARKEGITPR--------- 90 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHH----HHHHHHTSCHH---------
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHH----HHHHHcCCCHH---------
Confidence 56799999999999999999999999999999999999999999999999999954 44566788775
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCcccccc
Q 007761 169 RVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS 247 (590)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~ 247 (590)
++++++.+.++++|++|||.+| |.+ |+++.|.+.++++|++|.++|+||+++++++||+.|++++++.|++..
T Consensus 91 ---~~~~~~~~~~~~~l~~lgi~~d~~~~---t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~ 164 (536)
T 4dlp_A 91 ---DLADRNTSAFRRMAEVLNSSNDDYIR---TSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR 164 (536)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCSEEEE---TTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCCccee---CCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC
Confidence 5678899999999999999999 443 889999999999999999999999999999999999999999887411
Q ss_pred ccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCce
Q 007761 248 EEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 327 (590)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V 327 (590)
+
T Consensus 165 ~------------------------------------------------------------------------------- 165 (536)
T 4dlp_A 165 A------------------------------------------------------------------------------- 165 (536)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCcee
Q 007761 328 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 407 (590)
Q Consensus 328 ~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v 407 (590)
+|. +|++||+++
T Consensus 166 ---------------------------~g~-----------------------------------------~c~~~g~~~ 177 (536)
T 4dlp_A 166 ---------------------------DGV-----------------------------------------RYGPQGTPV 177 (536)
T ss_dssp ---------------------------TSC-----------------------------------------EECTTSSBC
T ss_pred ---------------------------CCC-----------------------------------------cccCCCCcc
Confidence 110 478999999
Q ss_pred EEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeeeec-CcccccCeeEEcCCcccEEEeCC
Q 007761 408 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARN 485 (590)
Q Consensus 408 ~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISRqr-~WG~pIPi~~~~~~~~~~~~~~~ 485 (590)
+++.++||||++++++++++++++++...+.|+..++.+.+|++ +++|||||||+ +||+|||. .
T Consensus 178 e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~----~---------- 243 (536)
T 4dlp_A 178 EWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG----D---------- 243 (536)
T ss_dssp EEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT----C----------
T ss_pred eEEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC----C----------
Confidence 99999999999999999999999887777899999999999998 79999999995 69999992 1
Q ss_pred hhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhhH----HHHHHHHhh
Q 007761 486 ADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMMG 561 (590)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~~----W~~~~~~~~ 561 (590)
+++|+||||||+++|++.++||... .+|+++||+|++++|+||++| |++++++++
T Consensus 244 --------------------~~~v~yvWfda~~~y~s~~~~~~~~-~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g 302 (536)
T 4dlp_A 244 --------------------EKHVMYVWVDALTNYITALGYPDTT-DERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQ 302 (536)
T ss_dssp --------------------TTSEECHHHHHHHHHHHTTTTTCTT-SGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTT
T ss_pred --------------------CCCceEEeeCCcHHHHHhcCCCCCc-hHHHhhCCcceEEeechHHHHHHHHHHHHHHHCC
Confidence 3689999999999999999999876 679999999999999999997 888887765
Q ss_pred ccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 562 IEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 562 ~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
. .||++|++||+|++ +|+|||||
T Consensus 303 ~-----~~~~~v~~hg~v~~-~G~KMSKS 325 (536)
T 4dlp_A 303 L-----PLPKRVFAHGFLFN-RGEKMSKS 325 (536)
T ss_dssp C-----CCCSCEEEECCEEC---------
T ss_pred C-----CCCcEEEeeeeEee-CCceeccc
Confidence 4 47799999999985 99999998
No 12
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1.4e-59 Score=525.40 Aligned_cols=312 Identities=21% Similarity=0.320 Sum_probs=264.7
Q ss_pred cCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCC
Q 007761 78 QGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK 157 (590)
Q Consensus 78 ~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~ 157 (590)
...|++...+++++|+|++|+|||||+|||||+|+++++|+++||+|++||+|.+++|+|+||.+| +.++.+.|.+
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki----~~~a~~~g~~ 89 (564)
T 3kfl_A 14 AQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKV----AEAAAKQGVS 89 (564)
T ss_dssp ----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHH----HHHHHHTTCC
T ss_pred hhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHH----HHHHHHcCCC
Confidence 457887777778899999999999999999999999999999999999999999999999999985 4456677888
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCC
Q 007761 158 RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQ 236 (590)
Q Consensus 158 ~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~ 236 (590)
+. ++++++.+.+++++++|||++| |.+ |+++.|.+.++++|++|+++|+||++.+.++||+.|+
T Consensus 90 p~------------~~~~~~~~~~~~~~~~lgi~~D~~~~---t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~ 154 (564)
T 3kfl_A 90 PM------------DFTTSVSSEFKQCFQEMNYDMNYFIR---TTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDE 154 (564)
T ss_dssp HH------------HHHHHHHHHHHHHHHHTTCCCSEEEE---TTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTT
T ss_pred HH------------HHHHHHHHHHHHHHHHcCCCCCcccc---CCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcC
Confidence 76 5678999999999999999999 433 8999999999999999999999999999999999999
Q ss_pred cccCCccccccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecC
Q 007761 237 TAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK 316 (590)
Q Consensus 237 t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~ 316 (590)
+++++.|+...
T Consensus 155 ~~l~~~~~~~~--------------------------------------------------------------------- 165 (564)
T 3kfl_A 155 SFLTAQNVADG--------------------------------------------------------------------- 165 (564)
T ss_dssp EEECGGGEEEE---------------------------------------------------------------------
T ss_pred CCCCHHHhccC---------------------------------------------------------------------
Confidence 99999987411
Q ss_pred ccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeecccc
Q 007761 317 YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLR 396 (590)
Q Consensus 317 ~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~ 396 (590)
|| .+|..| +
T Consensus 166 -------------~~----------------------~~g~~c---~--------------------------------- 174 (564)
T 3kfl_A 166 -------------VD----------------------RDGKPC---K--------------------------------- 174 (564)
T ss_dssp -------------EC----------------------TTSCEE---E---------------------------------
T ss_pred -------------cC----------------------CCCCEe---c---------------------------------
Confidence 00 112111 0
Q ss_pred CcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeee----ecCcccccCee
Q 007761 397 VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR----QLWWGHRIPVW 471 (590)
Q Consensus 397 ~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISR----qr~WG~pIPi~ 471 (590)
.+-+||++++.+.++|||+++++++++++++++++...+.|++.++.+.+||+ +++|||||| |++||+|||.
T Consensus 175 --~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~- 251 (564)
T 3kfl_A 175 --VSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG- 251 (564)
T ss_dssp --EETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT-
T ss_pred --cccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC-
Confidence 01257999999999999999999999999999877777899999999999998 899999999 8999999992
Q ss_pred EEcCCcccEEEeCChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCC-CCCChh-----hh--hhcCCccEE
Q 007761 472 YIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGW-PDVSAD-----DF--KKFYPTTML 543 (590)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~-~~~~~~-----~f--~~~~P~d~~ 543 (590)
.+.+|+||||||+++|++.++| |.+..+ +| +++||+|++
T Consensus 252 ---------------------------------~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~ 298 (564)
T 3kfl_A 252 ---------------------------------DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVH 298 (564)
T ss_dssp ---------------------------------EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEE
T ss_pred ---------------------------------CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceE
Confidence 1368999999999999999998 776533 37 899999999
Q ss_pred EEeechhhH----HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 544 ETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 544 ~~G~Dil~~----W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
++|+||++| |++++++++. .|+++|++|||| +.+|+|||||
T Consensus 299 ~~GkDii~FH~~~wpa~L~a~g~-----~~~~~v~~hg~v-~~~G~KMSKS 343 (564)
T 3kfl_A 299 VVGKDILKFHAIYWPAFLMSAEL-----PLPERLVSHGWW-TKDHKKISKS 343 (564)
T ss_dssp EEEGGGHHHHHTHHHHHHHHTTC-----CCCSCEEEECCE-EETTEECCTT
T ss_pred EEeecccchHHHHHHHHHHhCCC-----CCCcEEEEcccE-eeCCcccccc
Confidence 999999998 8888887654 477999999999 6999999998
No 13
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=1.9e-59 Score=524.67 Aligned_cols=321 Identities=22% Similarity=0.373 Sum_probs=275.6
Q ss_pred CCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHH
Q 007761 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (590)
Q Consensus 87 ~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f 166 (590)
.++++|+|++|||||||+|||||+|+++++|+++||+|++||+|.+++|+|+||++|+.. +.+.|.++.
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~----a~~~g~~~~------- 83 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLK----AQQLGITPE------- 83 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHH----HHHHTSCHH-------
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHH----HHHhCCCHH-------
Confidence 457889999999999999999999999999999999999999999999999999996554 455677765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccc
Q 007761 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (590)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~ 246 (590)
++++++.+.++++|++|||++| +.+.|+++.|.+.++++|.+|+++|+||++++.++||+.|+++|++.+|+
T Consensus 84 -----~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~- 155 (560)
T 3h99_A 84 -----QMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVK- 155 (560)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE-
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcC-
Confidence 4568889999999999999888 23448999999999999999999999999999999999999999998773
Q ss_pred cccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCc
Q 007761 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (590)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~ 326 (590)
|+
T Consensus 156 ----------------------------------------------------------------------------g~-- 157 (560)
T 3h99_A 156 ----------------------------------------------------------------------------GT-- 157 (560)
T ss_dssp ----------------------------------------------------------------------------EE--
T ss_pred ----------------------------------------------------------------------------CC--
Confidence 21
Q ss_pred eecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCce
Q 007761 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (590)
Q Consensus 327 V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~ 406 (590)
||.|+.. ++.|..|++||.+ ..+.+...|+|++||++
T Consensus 158 ---cp~c~~~----------------~~~gd~ce~cg~~------------------------~~~~~l~~~~~~~~g~~ 194 (560)
T 3h99_A 158 ---CPKCKSP----------------DQYGDNCEVCGAT------------------------YSPTELIEPKSVVSGAT 194 (560)
T ss_dssp ---CTTTCCS----------------SEETTBCTTTCCB------------------------CCGGGCEEEEETTTCCC
T ss_pred ---CCCCCCc----------------ccccchhhhcccc------------------------CChhhhcCCccccCCCC
Confidence 6666543 4678888888864 23445667999999999
Q ss_pred eEEeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeeeec-CcccccCeeEEcCCcccEEEeC
Q 007761 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVAR 484 (590)
Q Consensus 407 v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISRqr-~WG~pIPi~~~~~~~~~~~~~~ 484 (590)
++++.++|||++++++++.++++++++ .+|+..++.+.+|++ +++|||||||+ +||+|||..
T Consensus 195 ~~~~~~~~~f~~l~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~------------- 258 (560)
T 3h99_A 195 PVMRDSEHFFFDLPSFSEMLQAWTRSG---ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNA------------- 258 (560)
T ss_dssp CEEEEEEEEEECGGGGHHHHHHHHHTS---CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTC-------------
T ss_pred ceEEecceEEEEHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCC-------------
Confidence 999999999999999999999999863 357788999999999 89999999999 899999931
Q ss_pred ChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhc-CCCCCC--hhhhhhcCCcc-----EEEEeechhh----H
Q 007761 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVS--ADDFKKFYPTT-----MLETGHDILF----F 552 (590)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~-~~~~~~--~~~f~~~~P~d-----~~~~G~Dil~----~ 552 (590)
+.+|+|||||+.++|++.. +|+... ..+|++|||.| ++++|+||++ +
T Consensus 259 ---------------------~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~ 317 (560)
T 3h99_A 259 ---------------------PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLF 317 (560)
T ss_dssp ---------------------TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTH
T ss_pred ---------------------CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHH
Confidence 2579999999999998776 344321 25799999999 9999999998 7
Q ss_pred HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 553 WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 553 W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
|+++++++++ .+| ++|++||||++ +|+|||||
T Consensus 318 ~~a~l~~~g~----~~p-~~v~~hg~v~~-~G~KMSKS 349 (560)
T 3h99_A 318 WPAMLEGSNF----RKP-SNLFVHGYVTV-NGAKMSKS 349 (560)
T ss_dssp HHHHHHHTTB----CCC-SEEEEECCEEE-TTEECCTT
T ss_pred HHHHHHhCCC----CCC-cEEEEEeEEEe-CCeecccc
Confidence 8888888765 568 99999999997 99999998
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.6e-58 Score=510.83 Aligned_cols=292 Identities=24% Similarity=0.369 Sum_probs=258.1
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 007761 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~ 168 (590)
+++|+|+.|+|||||+|||||+|+++++|+++||+||+||+|++++|+|+||++|+. .+++.|.++.
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~----~a~~~g~~~~--------- 68 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYR----AAQAAGEDPK--------- 68 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHH----HHHHHTSCHH---------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHH----HHHHcCCCHH---------
Confidence 357999999999999999999999999999999999999999999999999999644 4555687764
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccc
Q 007761 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (590)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (590)
++++++.+.++++|++||+++|+ .+.|+++.|.+.++++|++|+++|+||++++.++|||.|+|++++.|+.
T Consensus 69 ---~~~~~~~~~~~~~~~~lgi~~d~--~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~--- 140 (500)
T 2d5b_A 69 ---AFVDRVSGRFKRAWDLLGIAYDD--FIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV--- 140 (500)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB---
T ss_pred ---HHHHHHHHHHHHHHHHhCCcCCC--CcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc---
Confidence 56788999999999999999883 3448999999999999999999999999999999999999999876541
Q ss_pred cCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCcee
Q 007761 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~ 328 (590)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeE
Q 007761 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (590)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (590)
.+.|+|||.+++
T Consensus 141 --------------------------------------------------------------------~g~c~~~~~~v~ 152 (500)
T 2d5b_A 141 --------------------------------------------------------------------EGLCPIHGRPVE 152 (500)
T ss_dssp --------------------------------------------------------------------TTBCTTTCSBCE
T ss_pred --------------------------------------------------------------------CCcCCCCCCeee
Confidence 013999999999
Q ss_pred EeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeee--ec-CcccccCeeEEcCCcccEEEeC
Q 007761 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVAR 484 (590)
Q Consensus 409 ~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISR--qr-~WG~pIPi~~~~~~~~~~~~~~ 484 (590)
.+.++|||+++++++++++++++++...+.|+..++.+.+|++ +++|||||| |+ +||+|||. +
T Consensus 153 ~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~--~----------- 219 (500)
T 2d5b_A 153 RRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW--D----------- 219 (500)
T ss_dssp EEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT--E-----------
T ss_pred EEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCC--C-----------
Confidence 9999999999999999999999876666789999999999996 689999999 77 69999993 1
Q ss_pred ChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhh----HHHHHHHHh
Q 007761 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILF----FWVARMVMM 560 (590)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~----~W~~~~~~~ 560 (590)
+++|+||||||+++|++.++|+.+. +|+++||+|++++|+||++ +|++.+.++
T Consensus 220 ---------------------~~~v~~vWfds~~~y~~~~g~~~~~--~~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~ 276 (500)
T 2d5b_A 220 ---------------------ENHVTFVWFDALLNYVSALDYPEGE--AYRTFWPHAWHLIGKDILKPHAVFWPTMLKAA 276 (500)
T ss_dssp ---------------------EEEEECHHHHHHTHHHHTTTTTTCH--HHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHH
T ss_pred ---------------------CCCeeEEccccchhhHHHcCCCCCc--hHHHcCCCeEEEEeechhhhHHHHHHHHHHHc
Confidence 2579999999999999999998763 3888899999999999999 677777655
Q ss_pred hccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 561 GIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 561 ~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+ ..||+++++||+|++++|+|||||
T Consensus 277 g-----~~~~~~v~~~G~v~~~~G~KMSKS 301 (500)
T 2d5b_A 277 G-----IPMYRHLNVGGFLLGPDGRKMSKT 301 (500)
T ss_dssp T-----CCCCSEEEEECCEECTTSSCCCTT
T ss_pred C-----CCCCcEEEECceEEeCCCCccccc
Confidence 4 357899999999998899999998
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.1e-55 Score=487.78 Aligned_cols=288 Identities=23% Similarity=0.311 Sum_probs=223.3
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHH
Q 007761 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~ 168 (590)
+++|+|+.|+|||||+|||||+|+++++|+++||+||+||+|++++|+|+||++|+. .|+++|.++.
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~----~a~~~g~~~~--------- 70 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQK----KAEELGISPK--------- 70 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHT----HHHHSSSCHH---------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHH----HHHHcCCCHH---------
Confidence 467999999999999999999999999999999999999999999999999999544 4566787764
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccCCcccCCccccccc
Q 007761 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (590)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~~t~lsd~Ev~~~~ 248 (590)
++++++.+.+++++++|||++|+ .+.|+++.|.+.++++|.+|+++|+||++.+.++|||.|+|++++.|++.
T Consensus 71 ---~~~~~~~~~~~~~~~~lgi~~d~--~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~-- 143 (497)
T 2csx_A 71 ---ELVDRNAERFKKLWEFLKIEYTK--FIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE-- 143 (497)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------
T ss_pred ---HHHHHHHHHHHHHHHHhCCcCCC--CccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhcc--
Confidence 46788999999999999998873 34499999999999999999999999999999999999999988775410
Q ss_pred cCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCcee
Q 007761 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (590)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~ 328 (590)
T Consensus 144 -------------------------------------------------------------------------------- 143 (497)
T 2csx_A 144 -------------------------------------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccCcccCCCCceeE
Q 007761 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (590)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~ 408 (590)
.+.|+|||.+++
T Consensus 144 --------------------------------------------------------------------~~~c~~~~~~~~ 155 (497)
T 2csx_A 144 --------------------------------------------------------------------DHTCPIHQKKCE 155 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------CCCCCCCCCCCe
Confidence 024899999999
Q ss_pred EeeecccccccchHHHHHHHHHHcCCceEecchHHHHHHHHHh-cCCCeeeee--ec-CcccccCeeEEcCCcccEEEeC
Q 007761 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVAR 484 (590)
Q Consensus 409 ~~~~~QWFi~~~~~~~~~~~~i~~~~i~~~P~~~~~~~~~~l~-~l~DW~ISR--qr-~WG~pIPi~~~~~~~~~~~~~~ 484 (590)
.+.++|||+++++++++++++++++...+.|+..++.+.+|++ +++|||||| |+ +||+|||+.
T Consensus 156 ~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~------------- 222 (497)
T 2csx_A 156 YIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD------------- 222 (497)
T ss_dssp --CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE-------------
T ss_pred EEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCC-------------
Confidence 9999999999999999999999877667789999999999997 799999999 66 699999941
Q ss_pred ChhHHHHHhhhhcCCCcceeecCceeEEeecCCchhhhhcCCCCCChhhhhhcCCccEEEEeechhh----HHHHHHHHh
Q 007761 485 NADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILF----FWVARMVMM 560 (590)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~dvlDvWfdS~~~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Dil~----~W~~~~~~~ 560 (590)
+.+++||||||++.|.+.+ +.+ .. ++||+|++++|+||++ +|++.+.++
T Consensus 223 ---------------------~~~~i~vW~ds~~~~~s~~--~~~--~~--~~~p~di~~~G~D~~~~H~~~~~a~l~~~ 275 (497)
T 2csx_A 223 ---------------------PEHTIYVWFDALFNYISAL--EDK--VE--IYWPADLHLVGKDILRFHTVYWPAFLMSL 275 (497)
T ss_dssp ---------------------EEEEECSHHHHHTHHHHTT--TTT--HH--HHCSCSCEEEEGGGHHHHHTHHHHHHHHH
T ss_pred ---------------------CCceEEEecccchhhcccC--CCc--ch--hhCCceEEEeecchhHhHHHHHHHHHHHc
Confidence 1578999999998888766 221 11 5679999999999999 677776555
Q ss_pred hccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 561 GIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 561 ~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+ ..||+++++||||++ +|+|||||
T Consensus 276 g-----~~~~~~~~~~G~v~~-~G~KMSKS 299 (497)
T 2csx_A 276 G-----YELPKKVFAHGWWTV-EGKKMSKT 299 (497)
T ss_dssp T-----CCCCSCEEEECCEES-SSSBCCTT
T ss_pred C-----CCCCcEEEECcEEEe-CCceeCCc
Confidence 3 458899999999996 99999998
No 16
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=9.9e-37 Score=282.06 Aligned_cols=140 Identities=45% Similarity=0.790 Sum_probs=133.2
Q ss_pred CCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcccccccCcEEEccCCCCCeeeEeecCccccCCCCCceec
Q 007761 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 329 (590)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~ 329 (590)
.+++++|+|++ +.+.+|+|||||||||+||+||+|||++++|++|+|+++.||++ ++++||+.++||++++|||+||+
T Consensus 3 ~~~~~~v~F~~-~~~~~l~i~TTrP~Tl~g~~aiav~P~~~~~~~l~g~~~~~P~~-~~~ipI~~~~~V~~~~GTG~V~~ 80 (147)
T 1wka_A 3 PGKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLT-EVWIPILADPAVEKDFGTGALKV 80 (147)
T ss_dssp -CEEEEEEEEB-TTSCEEEEEESCGGGGGGCCEEEECTTCTTTGGGTTCEEECTTS-SCEEEEEECTTCCTTSTTSEEEE
T ss_pred cceEEEEEEEC-CCCcEEEEEECCceecccceEEEECCCCchHHHhcCCEEECCCC-CCeeEEEEeCccccCCCCCcEEE
Confidence 57899999999 66789999999999999999999999999999999999999995 79999999999999999999999
Q ss_pred CCCCChhhHHHHHHhCCCeeEeecCCCceecccCc----cCCCCHHHHHHHHHHHHHHcCCcceeeec
Q 007761 330 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPH 393 (590)
Q Consensus 330 ~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~----~~G~~~~~a~~~i~~~L~~~g~~~~~~~~ 393 (590)
||+||++||++|+++|||+++++|++|+| +++. |+|+.+++||+.|++.|+++|++++.+++
T Consensus 81 ~Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 81 TPAHDPLDYEIGERHGLKPVSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp CTTTCHHHHHHHHHHTCCCCCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHcCCCcceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 99999999999999999999999999999 6776 99999999999999999999999987765
No 17
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=8.7e-35 Score=279.75 Aligned_cols=145 Identities=31% Similarity=0.448 Sum_probs=131.2
Q ss_pred CCeEEEEEEEecCC------CceEEEeecCCCccCCCceEEeCCC---------Cccc----------------------
Q 007761 250 PGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAVNPQ---------DEHY---------------------- 292 (590)
Q Consensus 250 ~~~~~~~~~~~~~~------~~~l~v~Tt~Petl~~~~~v~v~p~---------~~~y---------------------- 292 (590)
.++++||+|++.+. +.+|+|||||||||+||+||+|||+ +++|
T Consensus 2 ~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 81 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFP 81 (186)
T ss_dssp -CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCTTSCEEEEEE
T ss_pred ccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhcCcEEEEEEE
Confidence 46789999999764 6799999999999999999999999 5556
Q ss_pred -ccccCcEEEccCCC--CCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecCCCceecccCccCCCC
Q 007761 293 -SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 369 (590)
Q Consensus 293 -~~l~G~~~~~P~~~--~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~ 369 (590)
.+|.|+++.||++. ++.+||+.++||++++|||+||+||+||++||++|++||||++++||++|++++. + |+||.
T Consensus 82 G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~-~-~~Gl~ 159 (186)
T 1wny_A 82 GKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLY 159 (186)
T ss_dssp HHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST-T-CTTCB
T ss_pred cccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC-C-CCCcC
Confidence 34899999999954 7899999999999999999999999999999999999999999999999999987 7 99999
Q ss_pred HHHHHHHHHHHHHHcCCcceeeecccc
Q 007761 370 RFEARKKLWSDLEETGLAVKKEPHTLR 396 (590)
Q Consensus 370 ~~~a~~~i~~~L~~~g~~~~~~~~~~~ 396 (590)
+++|++.|++.|+++|++++.+++.|+
T Consensus 160 v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 160 FREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred HHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 999999999999999999999999884
No 18
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.97 E-value=2.7e-31 Score=257.51 Aligned_cols=139 Identities=34% Similarity=0.504 Sum_probs=123.7
Q ss_pred CCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCccc-------------c--------------------ccc
Q 007761 250 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHY-------------S--------------------QFI 296 (590)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~y-------------~--------------------~l~ 296 (590)
-|+.++|+|++.+.+.+|+|||||||||+||++|+|||++++. . .|.
T Consensus 9 ~~~g~~v~F~~~~~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~ 88 (196)
T 2ajg_A 9 MGEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDT 88 (196)
T ss_dssp --CEEEEEEEBTTCSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTCHHHHHHHHHHHHCCCCGGGGGGSCCCEEEE
T ss_pred cCceEEEEEEeCCCCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCHHHHHHHHHHhhcccccceEEEeeeeCCEEc
Confidence 3678999999988889999999999999999999999998631 1 267
Q ss_pred CcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeec---------CCCceecc-----c
Q 007761 297 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMN---------KDGTLNEV-----A 362 (590)
Q Consensus 297 G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~---------~~G~~~~~-----~ 362 (590)
|++|.||++ ++.+||+.++||++++|||+||+||+||++||++|+++|||++++|+ ++|.+++. +
T Consensus 89 G~~~~~P~~-~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns 167 (196)
T 2ajg_A 89 GFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNS 167 (196)
T ss_dssp EEEEECTTT-CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSS
T ss_pred CCEEECCCC-CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecC
Confidence 999999995 78999999999999999999999999999999999999999999996 46666543 4
Q ss_pred CccCCCCHHHHHHHHHHHHHHcCCcce
Q 007761 363 GLFRGLDRFEARKKLWSDLEETGLAVK 389 (590)
Q Consensus 363 ~~~~G~~~~~a~~~i~~~L~~~g~~~~ 389 (590)
+.|+|+.+++|++.|++.|+++|++.+
T Consensus 168 ~~~~Gl~v~eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 168 GEFNGLDHEAAFNAIADKLTAMGVGER 194 (196)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHTTSEEE
T ss_pred cccCCeEHHHHHHHHHHHHHHCCCcee
Confidence 789999999999999999999999865
No 19
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.96 E-value=3.6e-30 Score=252.94 Aligned_cols=128 Identities=34% Similarity=0.583 Sum_probs=112.1
Q ss_pred ceEEEeecCCCccCCCceEEeCCCCcccc----------------------------------------cccCcEEEccC
Q 007761 265 DFLTIATTRPETLFGDVALAVNPQDEHYS----------------------------------------QFIGMMAIVPM 304 (590)
Q Consensus 265 ~~l~v~Tt~Petl~~~~~v~v~p~~~~y~----------------------------------------~l~G~~~~~P~ 304 (590)
.+|+|||||||||+||++|+|||++++.. .|.|++|.|||
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~l~G~~~~~Pl 117 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPA 117 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEEEEEEEEECTT
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHHHHHHHHHHhhccccceeEEEeeeEEcCCEEECCC
Confidence 68999999999999999999999986320 14588999999
Q ss_pred CCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHHhCCCeeEeecC-------CCceec-----ccCccCCCCHHH
Q 007761 305 TYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK-------DGTLNE-----VAGLFRGLDRFE 372 (590)
Q Consensus 305 ~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~~i~~-------~G~~~~-----~~~~~~G~~~~~ 372 (590)
+ ++++||+.++||++++|||+||+||+||++||++|++||||++++||. +|.+++ +++.|+||++++
T Consensus 118 ~-~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl~~~e 196 (219)
T 3o0a_A 118 N-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSET 196 (219)
T ss_dssp T-CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTCBHHH
T ss_pred C-CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEecCCCCCCCCHHH
Confidence 5 789999999999999999999999999999999999999999999986 344433 468999999999
Q ss_pred HHHHHHHHHHHcCCcceeeec
Q 007761 373 ARKKLWSDLEETGLAVKKEPH 393 (590)
Q Consensus 373 a~~~i~~~L~~~g~~~~~~~~ 393 (590)
|++.|++.|+++|++.+.+.|
T Consensus 197 A~~~Ii~~L~~~g~l~~~~~y 217 (219)
T 3o0a_A 197 AKRKITEWLQDRGLGEKKVSY 217 (219)
T ss_dssp HHHHHHHHHHHTTSEEEC---
T ss_pred HHHHHHHHHHHCCCeeeeeee
Confidence 999999999999999886654
No 20
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.96 E-value=4.9e-30 Score=277.17 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=110.3
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~ 170 (590)
++.+....|||+|.+||||+|+++++|+++||+|++||+|.+++|+|++|.+ +++.+++.|.++.
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddK----Ii~~A~~~g~~~~----------- 89 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDK----IIKRAGENKESPA----------- 89 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHH----HHHHHHHTTSCHH-----------
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcH----HHHHHHHcCCCHH-----------
Confidence 3433334599999999999999999999999999999999999999999988 4555677787754
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEc-ceeEEEeccCC
Q 007761 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNLQ 236 (590)
Q Consensus 171 ~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~-~~~v~w~p~~~ 236 (590)
++++++.+.+++++++|||.+|+..+.. .+|...++++|++|+++|++|++ ++.||||+.+.
T Consensus 90 -e~a~~~~~~f~~d~~~LgI~~d~~~pra---Te~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 90 -ALAERFIQILHEDEKALRVLSPDQEPRA---TQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp -HHHHHHHHHHHHHHHHHTCCCCSBCCBG---GGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC
T ss_pred -HHHHHHHHHHHHHHHHcCCCCCccccCh---hhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc
Confidence 6789999999999999999999766443 48999999999999999999999 78999998774
No 21
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.96 E-value=1.1e-29 Score=275.65 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=95.8
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCC----------CCCCchHHHHHHHHHHHcCCCccccCHHHH
Q 007761 97 PPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT----------DHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (590)
Q Consensus 97 ~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~----------D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f 166 (590)
..|+|+|.+||||+|+++++|+++||+|++||+|.+++|+ |+||.+ +++.|+++|+++.
T Consensus 48 cgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddK----I~~~A~~~g~~~~------- 116 (501)
T 3sp1_A 48 CGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDK----VAKTAREKGLTVY------- 116 (501)
T ss_dssp CCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-----------------------CCHH-------
T ss_pred CCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcH----HHHHHHHcCCCHH-------
Confidence 3489999999999999999999999999999999999654 566777 4555667787764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEeccC
Q 007761 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 235 (590)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~p~~ 235 (590)
++++++.+.+++++++|||..||.. +.+++|...++++|++|+++|+||++++.||||+.+
T Consensus 117 -----e~a~~~~~~f~~d~~~Lgi~~d~~~---~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 117 -----EISEFFTEAFFNDCRKLNIVYPDKV---LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCCCSEE---EEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCCCcc---cCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 6789999999999999999999754 567899999999999999999999999999999877
No 22
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.96 E-value=5.1e-29 Score=268.32 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=94.8
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Q 007761 98 PPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177 (590)
Q Consensus 98 pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~ 177 (590)
.|+|+|++||||+|+++++|+++||+|++||+|.+++|+|+||.+| +..|.+.|.++. ++++++
T Consensus 46 gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki----~~~A~~~g~~~~------------~~~~~~ 109 (414)
T 3c8z_A 46 GITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPL----FERAERDGIDWR------------TLGDRE 109 (414)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHH----HHHHHHHTCCHH------------HHHHHH
T ss_pred CCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHH----HHHHHHcCCCHH------------HHHHHH
Confidence 4899999999999999999999999999999999999999999885 444556677664 567899
Q ss_pred HHHHHHHHHHhCCc-CC-CCCccccCChhHHHHHHHHHHHHHhcCceEEcc
Q 007761 178 GGTITSQIKRLGAS-CD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 226 (590)
Q Consensus 178 ~~~~~~~l~~LGi~-~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~ 226 (590)
.+.++++|++|||. +| |.+ |+ +|.+.++++|++|+++|++|+++
T Consensus 110 ~~~~~~~~~~Lgi~~~d~~~r---~t--~~~~~~~~~~~~L~~kG~~Y~~~ 155 (414)
T 3c8z_A 110 TQLFREDMAALRVLPPHDYVA---AT--DAIAEVVEMVEKLLASGAAYIVE 155 (414)
T ss_dssp HHHHHHHHHHTTCCCCSEEEE---GG--GCHHHHHHHHHHHHHHTSEEECS
T ss_pred HHHHHHHHHHcCCCCCcceec---cc--chHHHHHHHHHHHHHCCCEEecc
Confidence 99999999999999 88 433 33 38888999999999999999987
No 23
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.96 E-value=3.6e-29 Score=252.31 Aligned_cols=134 Identities=25% Similarity=0.398 Sum_probs=115.1
Q ss_pred CceEEEeecCCCccCCCceEEeCCCCcc----------------------------------------cccccCcEEEcc
Q 007761 264 SDFLTIATTRPETLFGDVALAVNPQDEH----------------------------------------YSQFIGMMAIVP 303 (590)
Q Consensus 264 ~~~l~v~Tt~Petl~~~~~v~v~p~~~~----------------------------------------y~~l~G~~~~~P 303 (590)
+.+|+|||||||||+||++|+|||++++ +.+|+|++|.||
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P 111 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAP 111 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEECT
T ss_pred CCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEEECC
Confidence 5689999999999999999999999432 124789999999
Q ss_pred CCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHH-------hC-------CCeeEeecC--CCcee--------
Q 007761 304 MTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK-------LG-------LPILNVMNK--DGTLN-------- 359 (590)
Q Consensus 304 ~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~-------~~-------l~~~~~i~~--~G~~~-------- 359 (590)
++.++.+||++++||++++|||+||+||+||++||++|++ || ||++++|+. +|.+.
T Consensus 112 l~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~ 191 (261)
T 2wfg_A 112 YAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDL 191 (261)
T ss_dssp TCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHT
T ss_pred CCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhccc
Confidence 9756899999999999999999999999999999999999 99 899999987 44432
Q ss_pred -------------------------c--ccCccCCCCHHHHHHHHHHHHHHcCCcceeeeccccC
Q 007761 360 -------------------------E--VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRV 397 (590)
Q Consensus 360 -------------------------~--~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~ 397 (590)
. +++.|+|+.+++|++.|++.|+++|+++....++|+-
T Consensus 192 ~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~ 256 (261)
T 2wfg_A 192 KIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEH 256 (261)
T ss_dssp TCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC-----
T ss_pred cccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeecc
Confidence 1 1688999999999999999999999999998888854
No 24
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.5e-27 Score=234.98 Aligned_cols=126 Identities=25% Similarity=0.410 Sum_probs=108.6
Q ss_pred CCceEEEeecCCCccCCCceEEeCCCCcc----------------------ccc------------------ccCcEEEc
Q 007761 263 RSDFLTIATTRPETLFGDVALAVNPQDEH----------------------YSQ------------------FIGMMAIV 302 (590)
Q Consensus 263 ~~~~l~v~Tt~Petl~~~~~v~v~p~~~~----------------------y~~------------------l~G~~~~~ 302 (590)
.+.+|+|||||||||+||++|+|||++++ |.. |+|+++.|
T Consensus 28 ~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~ 107 (252)
T 2wfd_A 28 KNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSA 107 (252)
T ss_dssp SCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTCCCEEEECCHHHHTTCEEEC
T ss_pred CCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcccEEEEEEEcccccCCEEEc
Confidence 45799999999999999999999999731 211 78999999
Q ss_pred cCCCCCeeeEeecCccccCCCCCceecCCCCChhhHH----------HHHHhCCC--------eeEeecC----------
Q 007761 303 PMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYL----------LARKLGLP--------ILNVMNK---------- 354 (590)
Q Consensus 303 P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~----------~~~~~~l~--------~~~~i~~---------- 354 (590)
|+++.+.+||++++||++++|||+||+||+||++||+ +|++|||| ++.+|+.
T Consensus 108 Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~ 187 (252)
T 2wfd_A 108 PLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVT 187 (252)
T ss_dssp SSCSSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHH
T ss_pred CCCCCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccchhh
Confidence 9964368999999999999999999999999999999 47889988 4565532
Q ss_pred -----------------------------CCceecccCccCCCCHHHHHHHHHHHHHHcCCccee
Q 007761 355 -----------------------------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKK 390 (590)
Q Consensus 355 -----------------------------~G~~~~~~~~~~G~~~~~a~~~i~~~L~~~g~~~~~ 390 (590)
+|+|+ ++.|+|+++++|++.|+++|+++|++...
T Consensus 188 ~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 250 (252)
T 2wfd_A 188 ICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDVKKTIQKKMIDAGDALIY 250 (252)
T ss_dssp HHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHHHHHHHHHHHHTTSEEEE
T ss_pred hhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHHHHHHHHHHHHCCCCccc
Confidence 46666 78899999999999999999999998653
No 25
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.93 E-value=1.2e-26 Score=252.68 Aligned_cols=118 Identities=17% Similarity=0.154 Sum_probs=102.9
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Q 007761 98 PPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKY 177 (590)
Q Consensus 98 pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~~~~ 177 (590)
.|+|+|++||||+|+++++|+++||+|++||+|.++.|+|++|.+ +.+.|++.|.++. ++++++
T Consensus 29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~k----i~~~A~~~g~~~~------------~~~~~~ 92 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDK----IIKRANENGESFV------------AMVDRM 92 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHH----HHHHHHHTTCCHH------------HHHHHH
T ss_pred CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHH----HHHHHHHcCCCHH------------HHHHHH
Confidence 488889999999999999999999999999999999999999966 4556777888765 567889
Q ss_pred HHHHHHHHHHhCCcC-CCCCccccCChhHHHHHHHHHHHHHhcCceEEc-ceeEEEeccC
Q 007761 178 GGTITSQIKRLGASC-DWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG-SYMVNWSPNL 235 (590)
Q Consensus 178 ~~~~~~~l~~LGi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~~-~~~v~w~p~~ 235 (590)
.+.+++++++|||.+ |+. +...+|.+.+++++++|.++|++|++ ++.|+||+.+
T Consensus 93 ~~~f~~~~~~LgI~~~d~~----~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~ 148 (461)
T 1li5_A 93 IAEMHKDFDALNILRPDME----PRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT 148 (461)
T ss_dssp HHHHHHHHHHTTCCCCSBC----CBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG
T ss_pred HHHHHHHHHHcCCCCCccc----ccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc
Confidence 999999999999998 532 22234889999999999999999999 8999998765
No 26
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.92 E-value=3.4e-26 Score=230.42 Aligned_cols=156 Identities=18% Similarity=0.284 Sum_probs=125.4
Q ss_pred eccCCcccCCccc--cccccCCeEEEEEEEecCCCceEEEeecCCCccCCCceEEeCCCCcc----------c-------
Q 007761 232 SPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH----------Y------- 292 (590)
Q Consensus 232 ~p~~~t~lsd~Ev--~~~~~~~~~~~~~~~~~~~~~~l~v~Tt~Petl~~~~~v~v~p~~~~----------y------- 292 (590)
.-+.+|.||+.|- .|+...++++ .+.+.+.+.+++||||||||||||+||||||+.++ |
T Consensus 47 ~~~~~~~l~~f~~~~~~k~~~~~~~--~~~l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~ 124 (311)
T 3pz6_A 47 AEKLNIKLPRFYSNPKNKAIFDQLW--ENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAA 124 (311)
T ss_dssp CCTTSCCCCCCCCCHHHHHHHHHHH--TTTCCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHH
T ss_pred HHHhCCCccccccCCCcccccchhe--eeecCCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHH
Confidence 3467899999886 3566555554 33556677899999999999999999999998421 1
Q ss_pred -------------------------ccccCcEEEccCCCCCeeeEeecCccccCCCCCceecCCCCChhhHHHHHH----
Q 007761 293 -------------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK---- 343 (590)
Q Consensus 293 -------------------------~~l~G~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~---- 343 (590)
++|+|+++.|||+..+.+||++++||++++|||+||++|+||++||.+|++
T Consensus 125 e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~hPl~~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~ 204 (311)
T 3pz6_A 125 VNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILEN 204 (311)
T ss_dssp HHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEECTTCSSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTT
T ss_pred HHHHHhcccccccCCCcEEEEEEEhHHhcCCEEECCCCCCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhc
Confidence 136799999999654489999999999999999999999999999996666
Q ss_pred -------hCC---------CeeEeecC---------------------------------------CCceecccCccCCC
Q 007761 344 -------LGL---------PILNVMNK---------------------------------------DGTLNEVAGLFRGL 368 (590)
Q Consensus 344 -------~~l---------~~~~~i~~---------------------------------------~G~~~~~~~~~~G~ 368 (590)
+|| +++.+|+- +|.|. +|.|+|+
T Consensus 205 k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~ 282 (311)
T 3pz6_A 205 RNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQ 282 (311)
T ss_dssp GGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTS
T ss_pred cHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCe
Confidence 674 66666642 24443 6899999
Q ss_pred CHHHHHHHHHHHHHHcCCcceee
Q 007761 369 DRFEARKKLWSDLEETGLAVKKE 391 (590)
Q Consensus 369 ~~~~a~~~i~~~L~~~g~~~~~~ 391 (590)
++.+|+++|.++|+++|..+...
T Consensus 283 ~V~eAk~~i~~~L~~~g~a~~yy 305 (311)
T 3pz6_A 283 SVKDCKQSCRDLLVQNNQCIVYS 305 (311)
T ss_dssp BHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EHHHHHHHHHHHHHHCCCceEEc
Confidence 99999999999999999987643
No 27
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.67 E-value=2.8e-16 Score=170.50 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=119.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHH
Q 007761 68 EERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVV 147 (590)
Q Consensus 68 E~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~v 147 (590)
.+.+.+.-+++..|+.... ++++++|++.+|||||+|||||+|+++++|+++|++++.||+|.....+.+.|.++...+
T Consensus 9 ~~~l~~i~~~~~~yG~~~~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~ 87 (464)
T 3fnr_A 9 NELANQALTNPNDFTKGEK-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLG 87 (464)
T ss_dssp HHHHHHHHHSGGGTTCCCC-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHHhHHhcCCCCC-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHH
Confidence 3444555566677887765 778999999999999999999999999999999999999999999999999998876554
Q ss_pred HHH---HHH--cCCC---cccc---------CH------------HHHHHHHHHHH-HHHHHHHHHHHHHhCCcCC-CCC
Q 007761 148 EKM---LAA--EGIK---RVEL---------SR------------DEFTKRVWEWK-EKYGGTITSQIKRLGASCD-WTR 196 (590)
Q Consensus 148 e~~---~~~--~g~~---~~~~---------~~------------e~f~~~~~~~~-~~~~~~~~~~l~~LGi~~D-w~~ 196 (590)
.-. ..+ .|.+ +++. ++ ++-.+.+|+|. +...+.+++++++|||.|| |..
T Consensus 88 ~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~ 167 (464)
T 3fnr_A 88 LSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVS 167 (464)
T ss_dssp HHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEE
T ss_pred HHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecC
Confidence 322 122 2222 1110 11 01122355654 5567889999999999999 776
Q ss_pred ccccCChhHHHHHHHHHHHHHhcCceEEcceeEEEe
Q 007761 197 ERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWS 232 (590)
Q Consensus 197 ~~~T~~~~~~~~v~~~f~~L~~kG~iY~~~~~v~w~ 232 (590)
|...++ .+.+++++|.++|++|+.++.+...
T Consensus 168 Ess~~~-----~~~~vv~~L~~~g~~~e~dGa~~~~ 198 (464)
T 3fnr_A 168 ERSYYD-----ALNATLESLKEHKGIYEQEGKIWLA 198 (464)
T ss_dssp GGGGST-----THHHHHHHHHHTTCEEEETTEEEEC
T ss_pred HHHHHH-----HHHHHHHHHHHCCCEEEeCCeEEEE
Confidence 643333 5899999999999999999987443
No 28
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.65 E-value=1.5e-16 Score=179.10 Aligned_cols=158 Identities=20% Similarity=0.106 Sum_probs=113.8
Q ss_pred HHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHc
Q 007761 75 WESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAE 154 (590)
Q Consensus 75 W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~ 154 (590)
-+.+..|+.....++++++|.+.+|||||++||||+|+++++|+++|++++.||+|.++..++++|.++...+.- ..+.
T Consensus 104 ~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~~ 182 (629)
T 2zue_A 104 LAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWG-YLRL 182 (629)
T ss_dssp HHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHH-HHHC
T ss_pred HhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHH-HHHh
Confidence 355667887665667889999999999999999999999999999999999999999999999999876543321 1111
Q ss_pred C------------------------------------CCcc--ccCHHHHH--HH----HHHHHHHHHHHHHHHHHHhCC
Q 007761 155 G------------------------------------IKRV--ELSRDEFT--KR----VWEWKEKYGGTITSQIKRLGA 190 (590)
Q Consensus 155 g------------------------------------~~~~--~~~~e~f~--~~----~~~~~~~~~~~~~~~l~~LGi 190 (590)
| .++. +.+++.+. +. .+++++.+...+++++++|||
T Consensus 183 g~~~~~~~~~~~~~~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I 262 (629)
T 2zue_A 183 KEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGV 262 (629)
T ss_dssp HHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcchhhhhhhcccccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 1110 00111111 00 045678889999999999999
Q ss_pred cCC-CCCccccCChhHHHHHHHHHHHHHhcCceE-----EcceeEEEeccCCcc
Q 007761 191 SCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIY-----QGSYMVNWSPNLQTA 238 (590)
Q Consensus 191 ~~D-w~~~~~T~~~~~~~~v~~~f~~L~~kG~iY-----~~~~~v~w~p~~~t~ 238 (590)
.+| |.++ ++..+...+++++++|.++|++| +.++.+ |..+...
T Consensus 263 ~~D~~~~e---s~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~--~v~~~~~ 311 (629)
T 2zue_A 263 KYDLLVWE---SDIVRRKLFEIALELLSKNENFYIPSDGKYRGAF--VMDLRKL 311 (629)
T ss_dssp CCSEEEEH---HHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCE--EEECTTT
T ss_pred ccccccCc---CccccchhHHHHHHHHHHCCCccccccCCcCCcE--EEECccc
Confidence 999 6553 33333678999999999999999 555554 4444433
No 29
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.63 E-value=1.2e-15 Score=170.64 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=115.3
Q ss_pred HHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHH
Q 007761 74 WWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA 153 (590)
Q Consensus 74 ~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~ 153 (590)
.-..+..|+.....++++++|++.+|||||++||||+|+++++|+++|++++.||+|.++..+++.|.++...+.- ..+
T Consensus 127 i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~ 205 (607)
T 1f7u_A 127 ILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG-FER 205 (607)
T ss_dssp HHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-HHH
T ss_pred HHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHH-HHH
Confidence 3455677887665567789999999999999999999999999999999999999999999999999876543321 111
Q ss_pred cCC----------------------------------CccccC----------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007761 154 EGI----------------------------------KRVELS----------RDEFTKRVWEWKEKYGGTITSQIKRLG 189 (590)
Q Consensus 154 ~g~----------------------------------~~~~~~----------~e~f~~~~~~~~~~~~~~~~~~l~~LG 189 (590)
.|. ...+.+ +++..+..+++++...+.+++++.+||
T Consensus 206 ~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~ 285 (607)
T 1f7u_A 206 YGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLN 285 (607)
T ss_dssp HCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 110 000001 112222234457788889999999999
Q ss_pred CcCC-CCCccccCChhHH-HHHHHHHHHHHhcCceEEcceeEEEec
Q 007761 190 ASCD-WTRERFTLDEQLS-RAVVEAFIRLHEKGLIYQGSYMVNWSP 233 (590)
Q Consensus 190 i~~D-w~~~~~T~~~~~~-~~v~~~f~~L~~kG~iY~~~~~v~w~p 233 (590)
|.+| |.++. .|. ..+.+++++|.++|++|+.++.++++.
T Consensus 286 V~fD~~~~ES-----~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~ 326 (607)
T 1f7u_A 286 IKYDVYSGES-----QVSKESMLKAIDLFKEKGLTHEDKGAVLIDL 326 (607)
T ss_dssp CCCSEEEEGG-----GCCHHHHHHHHHHHHHTTCEEEETTEEEEEG
T ss_pred CcceeecCcc-----hhhhhHHHHHHHHHHhCCCEEEECCcEEEEe
Confidence 9999 66553 232 468999999999999999999886654
No 30
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.57 E-value=3.8e-15 Score=167.02 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=101.0
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccc-cCHH-----
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVE-LSRD----- 164 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~-~~~e----- 164 (590)
+++|+...|||||++||||+|+++++|+++|++++.||+|.++..+++.|.++...+. ...+.|.+... ...+
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~-~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLF-ALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHH-HHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHH-HHHHhCCcccCCCCcchhHHH
Confidence 6899999999999999999999999999999999999999999888888876543322 12233332110 0000
Q ss_pred -------------------HHHHH-----HHHHHHHHHHHHHHHHHHhCCcCC-CCCccccCChhHHHHHHHHHHHHHhc
Q 007761 165 -------------------EFTKR-----VWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEK 219 (590)
Q Consensus 165 -------------------~f~~~-----~~~~~~~~~~~~~~~l~~LGi~~D-w~~~~~T~~~~~~~~v~~~f~~L~~k 219 (590)
+..+. ++++++.+.+.+++++++|||.+| |.+ +++..+...+++++++|.++
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~~~---es~~~~~~~v~~~~~~L~~k 259 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVW---ESDIVRAGLLQKALALLEQS 259 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEE---HHHHHHTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEecc---CCcccccchHHHHHHHHHHC
Confidence 00000 156788899999999999999999 655 33333467899999999999
Q ss_pred CceE-----EcceeEE
Q 007761 220 GLIY-----QGSYMVN 230 (590)
Q Consensus 220 G~iY-----~~~~~v~ 230 (590)
|++| +.++.++
T Consensus 260 G~~y~~~~g~~~G~~~ 275 (592)
T 1iq0_A 260 PHVFRPREGKYAGALV 275 (592)
T ss_dssp TTEECCSSSTTTTCEE
T ss_pred CCcccCcccCcCCCEE
Confidence 9999 5566543
No 31
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.46 E-value=3e-15 Score=165.62 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=92.6
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCC--chHHHHHHHHHHHc--CCCccccCHHH
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAG--IATQLVVEKMLAAE--GIKRVELSRDE 165 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~G--l~ie~~ve~~~~~~--g~~~~~~~~e~ 165 (590)
+.|++.++ |||||++||||+|+++++|+++||++++|++|.+++++|++| .++... ...+.++ |.++.++.++
T Consensus 20 ~~yv~~tg-PsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~-~~~a~~~~~G~~~~~~p~p- 96 (523)
T 1irx_A 20 EKYVVESG-ITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRN-VPQEWKDYLGMPISEVPDP- 96 (523)
T ss_dssp SEEEEEEE-ECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSS-SCGGGGGGTTSBGGGSCCT-
T ss_pred CeEEECCC-CCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhH-HHHHHHHHcCCCcccCCcc-
Confidence 35777676 999999999999999999999999999999999999999999 332000 0112233 6665433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHH-HHHHHHHHHHhcC
Q 007761 166 FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSR-AVVEAFIRLHEKG 220 (590)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~-~v~~~f~~L~~kG 220 (590)
| ..|+++++++.+.|+++|++|||.+|+.+ +++. |.+ .+++++++|.++|
T Consensus 97 ~-~~~~~~~~~~~~~~~~~l~~Lgi~~D~~~---~se~-~~~g~~~~~i~~L~~~G 147 (523)
T 1irx_A 97 W-GCHESYAEHFMRKFEEEVEKLGIEVDLLY---ASEL-YKRGEYSEEIRLAFEKR 147 (523)
T ss_dssp T-SSSSSHHHHHHHHHHHHHHTTTCCCEEEE---HHHH-HHTTTTHHHHHHHHHTH
T ss_pred h-hhHHHHHHHHHHHHHHHHHHcCCCceEEe---chhh-ccchHHHHHHHHHHHch
Confidence 1 23557789999999999999999888322 2222 666 7899999999999
No 32
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.61 E-value=2.4e-08 Score=102.19 Aligned_cols=94 Identities=28% Similarity=0.375 Sum_probs=69.4
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
++-.+|.|||+|||||+|++++ +|+.++++.+.++.-+|+...+ +.
T Consensus 7 ~~RFAPsPtG~LHiG~~rtal~-----n~l~Ar~~~g~~ilRieDtD~~---------------R~-------------- 52 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAALG-----SYLQARARQGRWLVRIEDIDPP---------------RE-------------- 52 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHHH-----HHHHHHHTTCEEEEEECCSCGG---------------GS--------------
T ss_pred EEEECcCCCCCccHHHHHHHHH-----HHHHHHhcCCeEEEEEecCCch---------------hh--------------
Confidence 3445699999999999999985 5555556677777777764311 00
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
...+.+.|.++|+.||+..| .. ....+++.....+++++|.++|++|.
T Consensus 53 ~~~~~~~I~~dL~~LGl~~D--~~-~~~qSer~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 53 VPGAAETILRQLEHYGLHWD--GD-VLWQSQRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp CTTHHHHHHHHHHHTTCCCS--SC-CEEGGGCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHcCCCCC--CC-CeeeeCCHHHHHHHHHHHHHcCCccc
Confidence 13467789999999998766 21 13445677788999999999999996
No 33
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.52 E-value=1.2e-07 Score=103.70 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=72.7
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.+|.|||.|||||+|++++...++| +|.+.++.-+|+..-+ ..
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~---------------R~------------- 143 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR---------------RV------------- 143 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---------------GC-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---------------cc-------------
Confidence 45666799999999999999998555555 6777777777775321 00
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
..++.+.|.++|+.||+..| . .+..++|.....+++++|.++|++|.
T Consensus 144 -~~e~~~~I~edL~wLGl~wd--~--~~~qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 144 -DPEAYDMIPADLEWLGVEWD--E--TVIQSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp -CTTHHHHHHHHHHHHTCCCS--E--EEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred -cHHHHHHHHHHHHHcCCCCC--C--CcccccCHHHHHHHHHHHHHcCCcee
Confidence 13577889999999998655 2 25667888999999999999999996
No 34
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.52 E-value=1.9e-07 Score=101.71 Aligned_cols=100 Identities=24% Similarity=0.248 Sum_probs=73.2
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~ 170 (590)
.++++..+|+|||+|||||+|++++.|.+||. ..|.-++++--+|. . +
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~---~---------------r------------ 59 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDL---E---------------R------------ 59 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSC---C---------------S------------
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCc---c---------------c------------
Confidence 46778888999999999999999999999997 77877776443331 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCCCCCc----c-ccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 171 WEWKEKYGGTITSQIKRLGASCDWTRE----R-FTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 171 ~~~~~~~~~~~~~~l~~LGi~~Dw~~~----~-~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
.+..+.+.|.++|+.||+..|=..+ + -...+++.+...++.++|.++|.+|.
T Consensus 60 --~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 60 --SEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp --GGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred --cHHHHHHHHHHHHHHcCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeE
Confidence 0134566788999999987551100 0 12355667778999999999999984
No 35
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.48 E-value=2.2e-07 Score=101.69 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=70.7
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.+|.|||.|||||||++++...+|| +|...++.-+|+.... ..
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-----------------R~----------- 73 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-----------------KE----------- 73 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-----------------GC-----------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-----------------hc-----------
Confidence 44555699999999999999999777766 4555666666664211 01
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
+.++.+.|.++|+.||+..|-. .+..++|.....+...+|+++|++|.
T Consensus 74 -~~e~~~~I~edL~wLGl~wde~---~~~qSer~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 74 -DIEYVESIKNDVEWLGFHWSGN---VRYSSDYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp -CHHHHHHHHHHHHHTTCCCSSS---CEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred -CHHHHHHHHHHHHHcCCCCCCC---CeehcccHHHHHHHHHHHHHCCCcee
Confidence 2467889999999999866521 24556777777888899999999996
No 36
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.45 E-value=6.1e-07 Score=99.86 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHH
Q 007761 69 ERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVE 148 (590)
Q Consensus 69 ~~~~~~W~~~~~f~~~~~~~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve 148 (590)
.-+.+.-+.+..|+.. ..+++.+-++ |+|||+|||||+|++++.+.+||. ..|.-++++ |+...
T Consensus 110 ~~~~~~~~~~~~~~~~---~~~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRi---eDtD~------- 173 (592)
T 3al0_C 110 GAFFDILEVGPKKIRR---CFELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRI---EDTDT------- 173 (592)
T ss_dssp ----------CCCCCC---CCCCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECB---CCCCS-------
T ss_pred HHHHHHHHcChhhccc---CCCeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEe---cCcCh-------
Confidence 3333344445555543 1246777777 999999999999999999999985 456545444 43210
Q ss_pred HHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCcc-------ccCChhHHHHHHHHHHHHHhcCc
Q 007761 149 KMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER-------FTLDEQLSRAVVEAFIRLHEKGL 221 (590)
Q Consensus 149 ~~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~LGi~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~kG~ 221 (590)
.+. +..+.+.|.++|+.||+..| ..- -...+++.....+++.+|.++|+
T Consensus 174 --------~r~--------------~~~~~~~I~~dL~wlGl~~D--~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~ 229 (592)
T 3al0_C 174 --------ERS--------------SREYEQQILESLRWCGLDWD--EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKR 229 (592)
T ss_dssp --------SSC--------------CHHHHHHHHHHHHHTTCCCS--BBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTT
T ss_pred --------hhc--------------cHHHHHHHHHHHHHcCCCCC--CCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCC
Confidence 011 14577789999999998765 310 02344556778999999999999
Q ss_pred eEE
Q 007761 222 IYQ 224 (590)
Q Consensus 222 iY~ 224 (590)
+|.
T Consensus 230 aY~ 232 (592)
T 3al0_C 230 AYY 232 (592)
T ss_dssp EEE
T ss_pred ceE
Confidence 997
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=98.36 E-value=4.5e-07 Score=103.55 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=71.7
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.+|.|||.|||||+|++++...++| +|.+.++.-+|+..-. +.
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---------------R~------------- 113 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE---------------LA------------- 113 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---------------TC-------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---------------cc-------------
Confidence 44455599999999999999999666665 5666777766664211 11
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
..++.+.|.++|+.||+..| .. .+..++|.....+++.+|+++|++|.
T Consensus 114 -~~e~~~~IledL~wLGl~wd--e~-~~~qSer~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 114 -RQEYVDSIADDLKWLGLDWG--EH-FYYASDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp -CHHHHHHHHHHHHHHTCCCT--TC-EEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred -cHHHHHHHHHHHHHcCCCCC--CC-cccHhhhHHHHHHHHHHHHHCCCcEe
Confidence 14678899999999998654 21 25566888889999999999999996
No 38
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.24 E-value=6.3e-07 Score=97.70 Aligned_cols=93 Identities=22% Similarity=0.301 Sum_probs=67.9
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 007761 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (590)
Q Consensus 95 ~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~ 174 (590)
+-.+|.|||.|||||+|++++...++ +++.+.++.-+|+...+ +. +
T Consensus 4 ~RFAPSPtG~lHiG~artal~n~l~A-----r~~~G~filRieDtD~~---------------R~--------------~ 49 (492)
T 2cfo_A 4 VRLAPSPTGNLHIGTARTAVFNWLYA-----RHRGGKFILRIEDTDRE---------------RS--------------R 49 (492)
T ss_dssp EEECCCTTSCCBHHHHHHHHHHHHHH-----HHTTCEEEEEECCCSSS---------------SC--------------C
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHH-----HhcCCeEEEEEeeCCcc---------------cc--------------c
Confidence 44569999999999999999854444 45666676666664211 11 1
Q ss_pred HHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 175 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 175 ~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
..+.+.|.++|+.||+..| .. ....+++.....+++++|.++|++|.
T Consensus 50 ~~~~~~i~~dL~wLGl~wd--e~-~~~QS~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 50 PEYTENILEGLQWLGLTWD--EG-PYFQSDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHHHHTTCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHcCCCCC--CC-CccccCCHHHHHHHHHHHHHCCCceE
Confidence 4577889999999998654 31 13455677788999999999999996
No 39
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.22 E-value=1.6e-06 Score=94.13 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=68.6
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHH
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRV 170 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~ 170 (590)
++.+ -.+|.|||.|||||+|++++.+.++|. ..| .++.-+|+.... +.
T Consensus 25 ~v~~-RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~~---------------R~----------- 72 (490)
T 4g6z_A 25 PVRT-RFAPSPTGFIHLGNIRSALYPWAFARK--MKG---TFVLRIEDTDVE---------------RS----------- 72 (490)
T ss_dssp CCEE-EECCCCCSCCBHHHHHHHHHHHHHHHH--TTC---EEEEEECCCCGG---------------GC-----------
T ss_pred CceE-EeCCCCCCCccHHHHHHHHHHHHHHHh--cCC---eEEEEeCCCCcc---------------cc-----------
Confidence 3444 445999999999999999998888774 344 444444543211 00
Q ss_pred HHHHHHHHHHHHHHHHHhCCcCCCCCccccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 171 WEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 171 ~~~~~~~~~~~~~~l~~LGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
+..+.+.|.++|+.||+..| .. .+..+++.....+++++|.++|++|.
T Consensus 73 ---~~~~~~~i~~dl~wlGl~~d--~~-~~~qS~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 73 ---SQEAVDAILEGMAWLGLDYD--EG-PYYQMQRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp ---CHHHHHHHHHHHHHTTCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred ---cHHHHHHHHHHHHHcCCCCC--CC-CcccccCHHHHHHHHHHHHHCCCEEe
Confidence 14577889999999998655 32 13455677888999999999999994
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.03 E-value=1.1e-05 Score=87.92 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=67.9
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
+++-.+|.|||.|||||+|++++.-.+||- ..| .++.-+|+...+ +.
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~~---------------R~------------- 72 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGG---KFILRIEDTDTE---------------RS------------- 72 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTC---EEEECBCCCCTT---------------TC-------------
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCC---EEEEEEeeCCcc---------------cc-------------
Confidence 344455999999999999999988777773 344 444444553211 11
Q ss_pred HHHHHHHHHHHHHHHhCCcCCCCCcc-------ccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 173 WKEKYGGTITSQIKRLGASCDWTRER-------FTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 173 ~~~~~~~~~~~~l~~LGi~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
+..+.+.|.++|+.||+..| ..- -...+++.....+++++|.++|++|.
T Consensus 73 -~~~~~~~I~~dL~wlGl~wD--e~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 73 -SREYEQQILESLRWCGLDWD--EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp -CHHHHHHHHHHHHHTTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred -cHHHHHHHHHHHHHcCCCCC--cCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEe
Confidence 14577789999999998755 320 12345666788999999999999997
No 41
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.99 E-value=9.2e-06 Score=88.00 Aligned_cols=94 Identities=21% Similarity=0.224 Sum_probs=67.3
Q ss_pred eCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Q 007761 95 SMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWK 174 (590)
Q Consensus 95 ~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~~ 174 (590)
+-.+|.|||.|||||+|++++.-.+|| ...| .++.-+|+...+ +. +
T Consensus 4 ~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~G---~filRieDtD~~---------------R~--------------~ 49 (468)
T 1j09_A 4 TRIAPSPTGDPHVGTAYIALFNYAWAR--RNGG---RFIVRIEDTDRA---------------RY--------------V 49 (468)
T ss_dssp EEECCCCSSSCBHHHHHHHHHHHHHHH--HTTC---EEEECBCCCCTT---------------SC--------------C
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH--HcCC---EEEEEeCcCCCc---------------cc--------------C
Confidence 445699999999999999998888877 2344 454455553211 11 1
Q ss_pred HHHHHHHHHHHHHhCCcCCCCCcc-------ccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 175 EKYGGTITSQIKRLGASCDWTRER-------FTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 175 ~~~~~~~~~~l~~LGi~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
..+.+.|.++|+.||+..| ..- -...+++.+...++.++|.++|++|.
T Consensus 50 ~~~~~~I~~dl~wlGl~wd--~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 50 PGAEERILAALKWLGLSYD--EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp TTHHHHHHHHHHHTTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred hHHHHHHHHHHHHcCCCCC--CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence 3467789999999998655 321 03455677788999999999999995
No 42
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.98 E-value=1.3e-05 Score=88.13 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=67.5
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
.+-.+|.|||+|||||+|++++...+|| +..|. ++.-+|+.... +.
T Consensus 26 rtRFAPsPtG~LHiG~artAl~n~~~Ar--~~~G~---fiLRieDtD~~---------------R~-------------- 71 (512)
T 4gri_A 26 RVRYAPSPTGLQHIGGIRTALFNYFFAK--SCGGK---FLLRIEDTDQS---------------RY-------------- 71 (512)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCE---EEECBCCCCTT---------------SC--------------
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCE---EEEEeCcCCCC---------------cC--------------
Confidence 3455699999999999999999998887 34554 44444553211 11
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCC----cccc-CChhHHHHHHHHHHHHHhcCceEE
Q 007761 174 KEKYGGTITSQIKRLGASCDWTR----ERFT-LDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~----~~~T-~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
+.++.+.|.++|+.||+..|-.- ++.. ..+++.+.-+++.++|.++|++|.
T Consensus 72 ~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 72 SPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp CHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 14567789999999998766211 1111 344556667889999999999995
No 43
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=97.86 E-value=3.5e-05 Score=83.97 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=68.6
Q ss_pred EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHH
Q 007761 94 ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEW 173 (590)
Q Consensus 94 i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~~ 173 (590)
.+-.+|.|||.|||||+|++++.-.+|| ...|.-+++ +|+...+ +.
T Consensus 8 r~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLR---ieDtD~~---------------R~-------------- 53 (498)
T 2ja2_A 8 RVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFR---IEDTDAQ---------------RD-------------- 53 (498)
T ss_dssp EEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEEC---BCCCCTT---------------TC--------------
T ss_pred eEEECcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEE---ECcCCCc---------------cc--------------
Confidence 3445599999999999999999999998 456644444 3443211 11
Q ss_pred HHHHHHHHHHHHHHhCCcCCCCCc-------cccCChhHHHHHHHHHHHHHhcCceEE
Q 007761 174 KEKYGGTITSQIKRLGASCDWTRE-------RFTLDEQLSRAVVEAFIRLHEKGLIYQ 224 (590)
Q Consensus 174 ~~~~~~~~~~~l~~LGi~~Dw~~~-------~~T~~~~~~~~v~~~f~~L~~kG~iY~ 224 (590)
...+.+.|.++|+.||+..| .. -....+++.+.-.++..+|.++|++|.
T Consensus 54 ~~~~~~~I~~~L~wlGl~wD--egp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 54 SEESYLALLDALRWLGLDWD--EGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp CHHHHHHHHHHHHHHTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred ChHHHHHHHHHHHHcCCCcC--CCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeEE
Confidence 14567789999999998655 31 113455677778999999999999995
No 44
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=95.22 E-value=0.018 Score=59.32 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=35.4
Q ss_pred cCCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 537 FYPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 537 ~~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.+.+|+.+.|.||..- -..+-++- .+....| ..+.++++.+.+|+|||||
T Consensus 168 ~~~~~~v~~G~DQ~~~~~l~rdla~--~~~~~~p--~~l~~pll~~l~G~KMSKS 218 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRKIHMLARENLP--RLGYSSP--VCLHTPILVGLDGQKMSSS 218 (323)
T ss_dssp HTTCSEEEEEGGGHHHHHHHHHHGG--GGTCCCC--EEEEECCCBCTTSSBCCTT
T ss_pred hcCCCEEEechhhHHHHHHHHHHHH--hcCCCCc--eEEecCcccCCCCCcccCC
Confidence 3689999999999863 22232322 2333445 3778999999999999998
No 45
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=94.95 E-value=0.021 Score=66.41 Aligned_cols=79 Identities=20% Similarity=0.393 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCcceeee--------------ccccCcccCCCCceeEEeeecccccccchHHHHHHHHHHcCCceE
Q 007761 372 EARKKLWSDLEETGLAVKKEP--------------HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 437 (590)
Q Consensus 372 ~a~~~i~~~L~~~g~~~~~~~--------------~~~~~p~~~r~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~~ 437 (590)
++-..+...|.++|++-..+. .+.....|+|||.+|+.+..+||||+++++++++++.++.. .-
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~--~~ 231 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKL--DH 231 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGC--TT
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhc--cc
Confidence 345567788999998765432 11123579999999999999999999999999999999753 23
Q ss_pred ecchHHHHHHHHHhc
Q 007761 438 MPERFEKIYNHWLSN 452 (590)
Q Consensus 438 ~P~~~~~~~~~~l~~ 452 (590)
.|++.+....+||..
T Consensus 232 wp~~v~~~~~~wig~ 246 (880)
T 4arc_A 232 WPDTVKTMQRNWIGR 246 (880)
T ss_dssp SCHHHHHHHHHHHCE
T ss_pred ccHHHHHHHHhhhcc
Confidence 789999999999964
No 46
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=94.20 E-value=0.024 Score=61.17 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=31.2
Q ss_pred EEEEeechhhHHHHHHHHhhccccCCCCCc-EEEEeceE-EeCCCC--ccccC
Q 007761 542 MLETGHDILFFWVARMVMMGIEFTGSVPFS-HVYLHGLI-RDSQVK--KCQKH 590 (590)
Q Consensus 542 ~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~-~v~~hG~v-~d~~G~--KMSKS 590 (590)
+|+.|.||. +|+.++......+ +..|.+ .++.||+| ++++|+ |||||
T Consensus 239 Iyv~G~dq~-~~f~~l~~~l~~l-G~~~~~~~h~~~g~V~l~~dG~~~KMSKr 289 (464)
T 3fnr_A 239 INIWGADHH-GYIPRMKAAMEFL-GFDSNNLEIILAQMVSLLKDGEPYKMSKR 289 (464)
T ss_dssp EEEEEGGGG-GGHHHHHHHHHTT-TCCGGGEEEEEECCEEEEETTEECCC---
T ss_pred EEEecCcHH-HHHHHHHHHHHHc-CCCccceEEEEeeeEEecCCCcccCCcCc
Confidence 789999998 6777764433323 434545 77899999 777885 99998
No 47
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=93.23 E-value=0.11 Score=60.59 Aligned_cols=77 Identities=22% Similarity=0.418 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCcceeee--------------ccccCcccCC-CCceeEEeeecccccccchHHHHHHHHHHcCCce
Q 007761 372 EARKKLWSDLEETGLAVKKEP--------------HTLRVPRSQR-GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 436 (590)
Q Consensus 372 ~a~~~i~~~L~~~g~~~~~~~--------------~~~~~p~~~r-~~~~v~~~~~~QWFi~~~~~~~~~~~~i~~~~i~ 436 (590)
++-..+...|.++|++-..+. .+.....|+| ||.+++.+.++|||++++++++++++.++. ..
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~--~~ 211 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEG--LN 211 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTT--CB
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhh--cC
Confidence 344567888999999755321 1222467999 999999999999999999999999998864 34
Q ss_pred EecchHHHHHHHHHh
Q 007761 437 IMPERFEKIYNHWLS 451 (590)
Q Consensus 437 ~~P~~~~~~~~~~l~ 451 (590)
.|++.++...+||.
T Consensus 212 -~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 212 -WPEKVKAMQRAWIG 225 (878)
T ss_dssp -SCHHHHHHHHHHHC
T ss_pred -CCHHHHHHHHHHhc
Confidence 89999999999996
No 48
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=92.03 E-value=0.042 Score=60.30 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=24.4
Q ss_pred CCccEEEEeechhhHH----HHHHHHhhccccCCCCCcEEEEeceEEeC-CCCccccC
Q 007761 538 YPTTMLETGHDILFFW----VARMVMMGIEFTGSVPFSHVYLHGLIRDS-QVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~W----~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~-~G~KMSKS 590 (590)
+.+++.+.|+|++.+. ....++.. .+ +..|+ ..+.||+|++. +|+|||||
T Consensus 229 l~~~vd~~G~Dh~~~h~s~~~~~~i~~~-al-G~~~p-~~~h~~~i~~~g~g~KmSKs 283 (523)
T 1irx_A 229 FGVDFEPAGKDHLVAGSSYDTGKEIIKE-VY-GKEAP-LSLMYEFVGIKGQKGKMSGS 283 (523)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHHHH-HH-CCCCC-BCCEECCEEESCC-------
T ss_pred cCCCCcCCCcCccCCCcchhhHHHHHHH-Hh-CCCCC-eEEEEEEEEeCCCCCCCCCc
Confidence 3455557899999732 11222211 22 33233 56777999987 79999998
No 49
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=91.02 E-value=0.12 Score=53.13 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=34.6
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhccc----cCCCCCcEEE--EeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEF----TGSVPFSHVY--LHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l----~~~~Pf~~v~--~hG~v~d~~G~KMSKS 590 (590)
|-+|+...|.||.. .=+.+-++.-+.. ....| +.++ .+.++.+.+|+|||||
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P-~~~~~~~~~~l~~l~G~KMSKS 196 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP-EARVNEEVAVVVGTDGAKMSKS 196 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCC-EEECCCSSCCCBCTTSSBCCGG
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCc-hhhhccccccccCCCCCcCCCC
Confidence 56899999999974 3333333322211 12345 6666 4789999999999998
No 50
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=89.83 E-value=0.31 Score=50.95 Aligned_cols=49 Identities=10% Similarity=-0.062 Sum_probs=29.6
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+.+|+.+.|.||..- =..+-++-.+ ....| ..+.+.++.+.+|+|||||
T Consensus 177 ~~a~~v~~G~DQ~~~~~l~rdl~~r~--~~~~p--~~l~~pll~gldG~KMSKS 226 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIFTFAEKYLPAL--GYSKR--VHLMNPMVPGLTGSKMSSS 226 (372)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGGG--TCCCC--EEEEECCCCCSSCC-----
T ss_pred hcCCEEEcChhHHHHHHHHHHHHHHc--CCCCC--EEEecCccCCCCcccccCC
Confidence 568999999999853 3334343333 22344 4557899999999999998
No 51
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=89.82 E-value=0.46 Score=50.12 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=27.0
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++++.+.+| --|||.|||||+++++. +.++++ .|+++++..|
T Consensus 37 ~~p~~vy~G-~~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 37 KRHLKLYWG-TAPTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp CSCCEEEEE-ECCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCeEEEEE-eCCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 445444444 34589999999877654 334444 7888877543
No 52
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=89.71 E-value=0.21 Score=51.67 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=34.5
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhccc-cC---CCCCcEEEE-eceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG---SVPFSHVYL-HGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l-~~---~~Pf~~v~~-hG~v~d~~G~KMSKS 590 (590)
|-+|+.+.|.||.. .=..+-++.-+.. .+ ..| +.++. +.++.+.+|+|||||
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS 209 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKS 209 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGG
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCC
Confidence 67899999999984 3333333322211 11 356 55555 689999999999998
No 53
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=89.22 E-value=0.32 Score=51.30 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=28.1
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhccccCCCCCcEEEEeceEEeCC-CCccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-VKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~-G~KMSKS 590 (590)
+.+|+.+.|.||.. .-..+-++-.+. ...| ..+.|.++.+.+ |+|||||
T Consensus 181 ~~~~~v~~G~DQ~~~~~l~rdl~~r~~--~~~p--~~l~~pll~gl~~G~KMSKS 231 (394)
T 2dlc_X 181 LDVDCQFGGVDQRKIFVLAEENLPSLG--YKKR--AHLMNPMVPGLAQGGKMSAS 231 (394)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGGGT--CCCC--EEEEECCCCCCC--------
T ss_pred hCCCEEecCccHHHHHHHHHHHHHHcC--CCCC--EEEecccccCCCCCCcCCCC
Confidence 68999999999985 344444443332 2334 556688999999 9999998
No 54
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=88.41 E-value=0.3 Score=50.81 Aligned_cols=49 Identities=20% Similarity=0.082 Sum_probs=24.3
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+.+|+.+.|.||..- =..+-++.-+ +.. | .-.+.+.++...+|+|||||
T Consensus 209 ~~~~i~p~G~DQ~~~i~l~rdla~r~--n~~-~-~~~l~~pll~~ldG~KMSKS 258 (356)
T 2pid_A 209 YGCRVQLGGSDQLGNIMSGYEFINKL--TGE-D-VFGITVPLITSTTGAKLGKS 258 (356)
T ss_dssp HCCCEEEEEGGGHHHHHHHHHHHHHH--SSC-C-CEEEEECCCC----------
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHh--CCC-C-ccccccccccCCCcccccCC
Confidence 389999999999743 3333333222 223 3 35677889999999999998
No 55
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=88.08 E-value=0.94 Score=46.30 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=24.0
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
++.+..| --|||.|||||+ ..+. .+.+++ ..|+++.+..
T Consensus 32 ~~~vy~G-~~PTg~lHlG~l-~~l~--~~~~lq-~~g~~~~~~i 70 (323)
T 2cyb_A 32 KPRAYVG-YEPSGEIHLGHM-MTVQ--KLMDLQ-EAGFEIIVLL 70 (323)
T ss_dssp CCEEEEE-ECCCSCCBHHHH-HHHH--HHHHHH-HTTCEEEEEE
T ss_pred CCEEEEC-cCCCCcchHHHH-HHHH--HHHHHH-HCCCcEEEEE
Confidence 3444455 358899999996 3332 344443 4588877754
No 56
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=88.06 E-value=0.25 Score=50.65 Aligned_cols=49 Identities=14% Similarity=-0.016 Sum_probs=33.0
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+++|+.+.|.||..- =..+=++.-+ +.. + ...+.+.++...+|+|||||
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~--n~~-~-~~~l~~pll~gldG~KMSKS 239 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRL--HQN-Q-VFGLTVPLITKADGTKFGKT 239 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHH--HCC-C-CEEEECCCCBCTTSCBTTEE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHh--CCC-C-ceeeccCccCCCCcccccCC
Confidence 378999999999743 3333333222 223 3 34567889988899999998
No 57
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=87.47 E-value=0.29 Score=50.18 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=24.0
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
--|||.|||||..+.+.. +.++++ |+++.+..|
T Consensus 10 ~~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia 42 (322)
T 3tzl_A 10 LQPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA 42 (322)
T ss_dssp ECCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC
T ss_pred cCCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe
Confidence 347899999999876543 445555 999887654
No 58
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=87.47 E-value=0.3 Score=51.98 Aligned_cols=50 Identities=16% Similarity=-0.037 Sum_probs=34.5
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+.+|+.+.|.||..- =..+-++.-+. .. .| ...+.+.++...+|+|||||
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~-~~-~~-~~~l~~pll~~ldG~KMSKS 235 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMY-GQ-TD-AYGLTIPLVTKSDGKKFGKS 235 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHH-CC-CC-CEEEEECCCBCTTSCBTTBC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhc-CC-CC-eeEeecccccCCccccccCC
Confidence 489999999999743 22333332220 22 34 56677899999999999998
No 59
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=87.22 E-value=0.28 Score=52.14 Aligned_cols=50 Identities=10% Similarity=-0.077 Sum_probs=33.7
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+.+|+.+.|.||..- =..+-++.-+. .. .| .-.+.+.++...+|+|||||
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~-~~-~~-~~~lt~pll~~ldG~KMSKS 234 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTK-GE-AR-AFGLTIPLVTKADGTKFGKT 234 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHH-C---C-CEEEEECCCCCTTSCCTTCC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhc-CC-CC-eeecccccccCCCcccccCC
Confidence 489999999999743 22232332220 22 24 46677899999999999998
No 60
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=86.60 E-value=0.47 Score=50.59 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=33.5
Q ss_pred CccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCC-ccccC
Q 007761 539 PTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVK-KCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~-KMSKS 590 (590)
.+|+.+.|.||..- -..+-++-.+ +..| ..++.+.++...+|. |||||
T Consensus 187 ~~~l~~gG~DQ~~ni~l~rdlarr~---~~~~-~~~lt~pll~gldG~~KMSKS 236 (432)
T 1h3f_A 187 RADVEMGGTDQRFNLLVGREVQRAY---GQSP-QVCFLMPLLVGLDGREKMSKS 236 (432)
T ss_dssp TCSEEEEEGGGHHHHHHHHHHHHHT---TCCC-CEEEEECCCBCTTSSSBCCGG
T ss_pred CccEEEechHHHHHHHHHHHHHHHh---CCCC-ceEeecccccCCCCccccCcC
Confidence 48999999999642 2222233222 2334 567789999999996 99998
No 61
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=86.33 E-value=0.49 Score=49.07 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=34.1
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhcc----ccCCCCCcEEEE-eceEEeCCCC-ccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIE----FTGSVPFSHVYL-HGLIRDSQVK-KCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~----l~~~~Pf~~v~~-hG~v~d~~G~-KMSKS 590 (590)
|-+|+.+.|.||.. .=..+-++.-+. -....| +.++. +.++.+.+|+ |||||
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS 219 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKS 219 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTT
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCC
Confidence 56899999999984 333333332211 012456 66665 6799999997 99998
No 62
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=86.33 E-value=1.2 Score=46.37 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=25.4
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
.+.+| --|||.|||||.++++. +.++++ .|+++.+..|
T Consensus 37 ~vy~G-~~PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 37 KIYWG-TATTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp EEEEE-ECCSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred EEEeC-cCCCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 34444 23789999999877655 444444 7988877543
No 63
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=86.14 E-value=0.53 Score=50.11 Aligned_cols=49 Identities=16% Similarity=0.039 Sum_probs=34.1
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
+.+|+.+.|.||..- =..+-++.-+ ... | .-.+.+.++...+|+|||||
T Consensus 186 ~~~~i~~gG~DQ~~ni~lgrdlarr~--~~~-~-~~~l~~plL~~ldG~KMSKS 235 (432)
T 2jan_A 186 HGCTLQIGGADQWGNIIAGVRLVRQK--LGA-T-VHALTVPLVTAADGTKFGKS 235 (432)
T ss_dssp HCCCEEEECSTTHHHHHHHHHHHHHH--HCC-C-CEEEECCCCBCTTSCBTTBC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHh--CCC-C-ccccccccccCCCcCcCCCC
Confidence 489999999999753 2223233222 222 4 46677899999999999998
No 64
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=85.26 E-value=0.59 Score=47.99 Aligned_cols=52 Identities=19% Similarity=0.112 Sum_probs=33.8
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhcc----ccCCCCCcEEEE--eceEEeCCC--CccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIE----FTGSVPFSHVYL--HGLIRDSQV--KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~----l~~~~Pf~~v~~--hG~v~d~~G--~KMSKS 590 (590)
|-+|+.+.|.||.. .=..+-++.-+. .....| .-++. +.++.+.+| +|||||
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS 196 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKS 196 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTT
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCC
Confidence 57899999999984 322333322211 112356 55553 678889999 999998
No 65
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=84.94 E-value=0.92 Score=47.25 Aligned_cols=49 Identities=20% Similarity=0.070 Sum_probs=33.2
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCC-----------------CCccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-----------------VKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~-----------------G~KMSKS 590 (590)
|-+|+.+.|.||..- =+.+-++-.+ +...| .++.+.++.+.+ |+|||||
T Consensus 176 ~~~~~v~~G~DQ~~~~~l~rdla~r~--~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS 242 (364)
T 2cya_A 176 MDLDIALGGMDQRKAHMLARDVAEKL--GRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKS 242 (364)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHHTTT--TCCCC--EEEEECCCBCSSCC----------------CBCCSS
T ss_pred cCCCEEeccchHHHHHHHHHHHHHHc--CCCCc--eeeccceeeCCCcccccccccccccccccccccCCC
Confidence 568999999999743 3333333322 23345 357788999998 7999998
No 66
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=84.90 E-value=0.59 Score=48.19 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=32.9
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhc----cccCCCCCcEEEEe--ceEEeCCC-CccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGI----EFTGSVPFSHVYLH--GLIRDSQV-KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~----~l~~~~Pf~~v~~h--G~v~d~~G-~KMSKS 590 (590)
|-+|+.+.|.||..- =..+-++.-+ .-....| ..++.- .++.+.+| +|||||
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P-~~~~~~~~p~l~gldG~~KMSKS 199 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP-QALLNPEAPRVPGIDGKAKMSKS 199 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC-EEECCTTSCCCBCTTSSSBCCTT
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC-eeecccccccccCCCCccccCCC
Confidence 578999999999742 2333333211 1112446 444442 69999999 999998
No 67
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=84.45 E-value=0.69 Score=48.34 Aligned_cols=49 Identities=16% Similarity=0.048 Sum_probs=32.8
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhccccCCCCCc-EEEEeceEEeC-CCC-ccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFS-HVYLHGLIRDS-QVK-KCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l~~~~Pf~-~v~~hG~v~d~-~G~-KMSKS 590 (590)
+-+|+...|.||.. +=+.+-++--+. .+ ++ .++.+.++... +|. |||||
T Consensus 199 l~ad~vpgG~DQ~~~l~l~Rdla~r~~--~~--~~~~~l~~p~l~gL~dG~~KMSKS 251 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVNMLAREYCDIKK--IK--KKPVILSHGMLPGLLEGQEKMSKS 251 (373)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHHHT--CS--CCCEEEEBCCCCCSSTTCCSCCSS
T ss_pred cCCcEEEcchhhHHHHHHHHHHHHHhC--CC--CCceEEeCCeeecCCCCCCCCcCC
Confidence 45889999999974 334444443332 11 22 46788999984 995 99998
No 68
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=84.14 E-value=0.37 Score=50.71 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=26.9
Q ss_pred CCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 90 DPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 90 k~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++..+.+| --|||+ |||||... + -.+.++++ .|+++++..|
T Consensus 63 ~~~~vy~G-~dPTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIg 104 (392)
T 1y42_X 63 RRIGAYVG-IDPTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIG 104 (392)
T ss_dssp CCCEEEEE-ECCCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEEC
T ss_pred CCCEEEEe-ecCCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEc
Confidence 34455556 667899 99999772 2 23445554 5999888654
No 69
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=83.48 E-value=0.77 Score=47.53 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=33.8
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhcc----ccCCCCCcEEEE--eceEEeCCC--CccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIE----FTGSVPFSHVYL--HGLIRDSQV--KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~----l~~~~Pf~~v~~--hG~v~d~~G--~KMSKS 590 (590)
|-+|+...|.||.. .=+.+-++-.+. -....| .-++. +.++.+.+| +|||||
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P-~~l~~~~~~~l~gL~g~~~KMSKS 206 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP-QFVQNKDTNRIMDLFDPTKKMSKS 206 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC-EEECCTTTTTCBCSSCTTSBCCSS
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC-eeecccccccccCCCCcchhcCCC
Confidence 67899999999984 333333332221 112346 55554 688888999 999998
No 70
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=82.05 E-value=0.78 Score=47.48 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=31.5
Q ss_pred CccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeC-CC-CccccC
Q 007761 539 PTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDS-QV-KKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~-~G-~KMSKS 590 (590)
-+|+.+.|.||..- =+.+-++-. ++...| .++.+.++... +| +|||||
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia~r--~~~~~p--~~~~~~~l~gL~dg~~KMSKS 236 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYAND--RGLKIP--ISLSHHMLMSLSGPKKKMSKS 236 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHHHH--TTCCCC--EEEEBCCCCCTTCSSCCCSTT
T ss_pred CCcEEEeccChHHHHHHHHHHHHH--hCCCCc--eeecCccccCCCCcccccccC
Confidence 47888899999743 333333322 223334 46777899888 67 799998
No 71
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=81.76 E-value=1.4 Score=46.10 Aligned_cols=47 Identities=9% Similarity=0.010 Sum_probs=33.1
Q ss_pred ccEEEEeechhh-HHHHHHHHhhccccCCCCCcEEEEeceEEeCCCC-ccccC
Q 007761 540 TTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVK-KCQKH 590 (590)
Q Consensus 540 ~d~~~~G~Dil~-~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~-KMSKS 590 (590)
+++...|.||.. .=+.+-++.-+ +...| .++.+.++...+|. |||||
T Consensus 225 a~~VpvG~DQ~~hl~l~Rdla~r~--n~~~p--~~l~~~~l~gLdG~~KMSKS 273 (386)
T 3hzr_A 225 RCLVLDSIKNVQFHSIIDQIATTL--NFIQP--TVLFHKMVPLLSGVTKFDIP 273 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHH--TCCCC--EEEEECCCCCTTCTTCCCCC
T ss_pred ccccccccchHHHHHHHHHHHHHc--CCCCc--eEeecCeeeCCCCCCccCcC
Confidence 566677999975 33455444433 23455 56789999999995 99999
No 72
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=81.14 E-value=1.3 Score=46.45 Aligned_cols=42 Identities=5% Similarity=0.018 Sum_probs=30.5
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 007761 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (590)
Q Consensus 88 ~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~ 133 (590)
+++++.+.+| --|||+|||||..+. .++.++++..|..+..+
T Consensus 79 ~~~~~~vysG-~~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~ 120 (386)
T 3hzr_A 79 AKKPTFIFIQ-KYPQKEVALEEYITL---EFARYLQDAFNIQVIIQ 120 (386)
T ss_dssp TTCCEEEEEE-ECCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEE
T ss_pred cCCCeEEEec-cCCCCCccHHHHHHH---HHHHHHHHhcCCeEEEE
Confidence 3677888888 789999999997665 23344555568777776
No 73
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=80.21 E-value=1.4 Score=44.86 Aligned_cols=45 Identities=7% Similarity=-0.065 Sum_probs=31.1
Q ss_pred CccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCC-CccccC
Q 007761 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV-KKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G-~KMSKS 590 (590)
-+|+.+.|.||..-. .+..-+. ...| .++.+.++.+.+| +|||||
T Consensus 163 ~~~~v~~G~DQ~~~~---~l~R~i~--~~~~--~~~~~~~l~~l~G~~KMSKS 208 (314)
T 2zp1_A 163 GVDVAVGGMEQRKIH---MLARELL--PKKV--VCIHNPVLTGLDGEGKMSSS 208 (314)
T ss_dssp TCSEEEEEGGGHHHH---HHHHHHS--SSCC--EEEEECCCBCTTSSSBCCTT
T ss_pred CCCEEEcChhHHHHH---HHHHHhc--CCCc--EEeeccccccCCcccccCCC
Confidence 578999999998632 1222221 1233 4567889999999 799998
No 74
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=80.19 E-value=1.6 Score=45.97 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=33.7
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCC--CccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV--KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G--~KMSKS 590 (590)
+-+|+...|.||... =+.+-++.-+ ....| .++.+.++...+| +|||||
T Consensus 242 ~~a~lvpvG~DQ~~~i~l~Rdla~r~--~~~~p--~~l~~~~l~gLdG~~~KMSKS 293 (406)
T 3tze_A 242 GAMCLVPAAVDQDPFFRLARDKAKAL--GEKKP--SSIYVSLLPDLKGVNRKMSAS 293 (406)
T ss_dssp TCEEEEEEEGGGHHHHHHHHHHHHHH--TCCCC--EEEEECCCCCTTSCCCCSSCS
T ss_pred CCCeEEeeccchHHHHHHHHHHHHHc--CCCCc--eeeccCcccCCCCCCcCCCCC
Confidence 357888899999753 3444444333 22344 4558899999999 699998
No 75
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=79.37 E-value=0.9 Score=47.45 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 88 GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 88 ~~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
++++|.|.+| --|||.|||||..... -.+++...|++|.+..
T Consensus 67 ~gk~~~v~sG-~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~I 108 (372)
T 3a04_A 67 RGERVAVLTG-FMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAI 108 (372)
T ss_dssp TTCCCEEEEE-ECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEE
T ss_pred cCCCCEEEeC-cCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEE
Confidence 3567777777 6789999999987432 2455555799987754
No 76
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=79.34 E-value=0.86 Score=47.96 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=24.7
Q ss_pred ccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCC--CccccC
Q 007761 540 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV--KKCQKH 590 (590)
Q Consensus 540 ~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G--~KMSKS 590 (590)
+|+...|.||... =..+-++.- +....| .++.+.++...+| +|||||
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS 274 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPR--LGYLKP--AVIHSKFFPGLSGPKGKMSSS 274 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHH--HTCCCC--EEEEECCCCCC----------
T ss_pred ceEEEeccchHHHHHHHHHHHHH--cCCCCc--eeeccccccCCCCCcccCCCC
Confidence 7788999999743 233333322 223344 4667899999999 799998
No 77
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=78.88 E-value=1.9 Score=45.27 Aligned_cols=47 Identities=6% Similarity=-0.029 Sum_probs=32.5
Q ss_pred ccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCC--CccccC
Q 007761 540 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV--KKCQKH 590 (590)
Q Consensus 540 ~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G--~KMSKS 590 (590)
+|+...|.||..- =+.+-++.-+ +...| ..+.+.++...+| +|||||
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~r~--n~~~p--~~l~~~~l~gLdG~~~KMSKS 257 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAESL--GYYKT--AALHSKFVPSLTSLSGKMSAS 257 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTGGG--TSCCC--EEEEECCCCCSSCSSSCCCTT
T ss_pred CceeecccchHHHHHHHHHHHHHc--CCCCC--eeeecccccCCCCCccccccC
Confidence 6788899999743 3444444333 23445 3556899999999 599999
No 78
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=78.82 E-value=1.2 Score=45.88 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcC-CCeeecCC
Q 007761 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKG-RPTLWLPG 135 (590)
Q Consensus 100 ~pnG~LHiGH~r~~vl~DilaR~~r~~G-~~V~~~~G 135 (590)
-|||.|||||..+.+. -+.+++ ..| +++.+..|
T Consensus 9 ~PTg~lHlGh~~g~l~--~~~~lQ-~~G~~~~~~~Ia 42 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIK--QWVAIG-EKLGRDAFFCIV 42 (337)
T ss_dssp CSCSCCBHHHHHTHHH--HHHHHH-HHHGGGEEEEEC
T ss_pred CCCCcccHHHHHHHHH--HHHHHH-hcCCCCEEEEEe
Confidence 4679999999987742 233444 357 88877544
No 79
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=78.53 E-value=1.8 Score=46.13 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=28.2
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCC--CccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV--KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G--~KMSKS 590 (590)
|-+++...|.||... =+.+-++--+ ....| .++.+.++...+| +|||||
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~r~--~~~~p--~~l~~~ll~gLdG~~~KMSKS 299 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVADKL--KYSKP--ALLHSRFFPALQGSTTKMSAS 299 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHHHH--TSCCC--EEEEECCCCCTTC--------
T ss_pred CCceEEEeccCcHHHHHHHHHHHHHh--CCCCc--eeeccccccCCCCCccccCCC
Confidence 457888999999743 3333333222 22456 3578899999999 999998
No 80
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=78.46 E-value=2.6 Score=44.23 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=28.3
Q ss_pred CCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 007761 89 SDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (590)
Q Consensus 89 ~k~f~i~~~pP~pn-G~LHiGH~r~~vl~DilaR~~r~~G~~V~~~ 133 (590)
++++.+.+| --|| |.|||||..... .+.++++.-|..|.+.
T Consensus 72 g~~~~vy~G-~~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~ 113 (393)
T 3hv0_A 72 GELFYLYTG-RGPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQ 113 (393)
T ss_dssp TCCCEEEEE-ECCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEE
T ss_pred CCCeEEEeC-CCCCCCCccHHHHHHHH---HHHHHHHhcCCCeEee
Confidence 456777777 6788 689999966554 3455666657776664
No 81
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=77.61 E-value=2.9 Score=43.58 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=36.1
Q ss_pred CCccEEEEeechh-hHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDIL-FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil-~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
|-+.+...|.||. |+=+.|-++.-+.-..+.|--..+.+-++-..+|+|||||
T Consensus 207 y~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S 260 (372)
T 3a04_A 207 YRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSS 260 (372)
T ss_dssp CCCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTT
T ss_pred ccceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCC
Confidence 4456788899998 4556665554332112234456777888888899999998
No 82
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=76.67 E-value=1.7 Score=45.73 Aligned_cols=46 Identities=13% Similarity=-0.007 Sum_probs=22.2
Q ss_pred cEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCC--CccccC
Q 007761 541 TMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV--KKCQKH 590 (590)
Q Consensus 541 d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G--~KMSKS 590 (590)
.+...|.||... =..+=++.- +....| .++.+.++...+| +|||||
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS 270 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPR--LGYLKP--SSIHSIFLPSLQGSQTKMSAS 270 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGG--GTCCCC--EEEEECCCCC-----------
T ss_pred eecccccchHHHHHHHHHHHHH--cCCCCc--eeeccCcccCCCCCCcCCCCC
Confidence 466789999743 233333332 223344 4678999999999 799998
No 83
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=76.23 E-value=2.1 Score=44.93 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=30.4
Q ss_pred CCCCEEEeCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 007761 88 GSDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (590)
Q Consensus 88 ~~k~f~i~~~pP~pnG-~LHiGH~r~~vl~DilaR~~r~~G~~V~~~ 133 (590)
+++++.+.+| --||| .|||||.... ..+.++++.-|..|..+
T Consensus 75 ~~~~~~vy~G-~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~ 117 (395)
T 3i05_A 75 SGQPFYLYTG-RGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQ 117 (395)
T ss_dssp TTCCEEEEEE-ECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEE
T ss_pred cCCCeEEEEe-ecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEE
Confidence 3567888888 78999 6999998654 34445566558777775
No 84
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=76.08 E-value=3.3 Score=46.74 Aligned_cols=46 Identities=9% Similarity=0.082 Sum_probs=29.9
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHH-HHHHHHHHcCCCeeecCCCCCCCc
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLED-IMVRYHRMKGRPTLWLPGTDHAGI 141 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~D-ilaR~~r~~G~~V~~~~G~D~~Gl 141 (590)
+++.+..| --|||.||||| .++.- .+.+++ ..|++|.+..| |-|++
T Consensus 39 ~~~~vy~G-~~PTg~lHLG~---~v~~~~~~~~lQ-~~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 39 PLIRCYDG-FEPSGRMHIAQ---GIFKAVNVNKCT-AAGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TTEEEEEE-ECCCSCCBHHH---HHHHHHHHHHHH-HTTEEEEEEEC-CGGGG
T ss_pred CCceEEee-ecCCCcchhHh---hHHHHHHHHHHH-HCCCcEEEEEe-eeEEE
Confidence 45666667 67899999999 33322 244444 46999888765 55553
No 85
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=75.69 E-value=1 Score=46.49 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhccc-cC------CCCCcEEEE--eceEEeC-CC-CccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEF-TG------SVPFSHVYL--HGLIRDS-QV-KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l-~~------~~Pf~~v~~--hG~v~d~-~G-~KMSKS 590 (590)
|-+|+...|.||.. +=+.|-++--+.. .+ ..| ..++. +.++... +| +|||||
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p-~~li~~~~~~l~gL~dg~~KMSKS 205 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIP-EPYIPTVNARVMSLQDATKKMSKS 205 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCC-EECCCSCCCCCEETTEEEEECCTT
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccC-hhhhccCcccccCCCCCCCccCCC
Confidence 46889999999984 4455555433221 11 234 44444 4577776 57 699999
No 86
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=75.38 E-value=1.6 Score=49.23 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=32.6
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCc-EEEEeceEEeC-CCC-ccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFS-HVYLHGLIRDS-QVK-KCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~-~v~~hG~v~d~-~G~-KMSKS 590 (590)
+-+|+...|.||..- =+.+-++.-+ +.+ ++ .++.+.++... +|. |||||
T Consensus 182 ~~ad~vpvG~DQ~~~l~l~Rdla~r~--n~~--~~p~~l~~~~l~gL~dG~~KMSKS 234 (690)
T 3p0j_A 182 LKADICQLGLDQRKVNMLAREYCDLI--GRK--LKPVILSHHMLAGLKQGQAKMSKS 234 (690)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHHT--TCC--CCCEEEEBCCCCCSSTTCSSCBTT
T ss_pred hCCCEEeccccHHHHHHHHHHHHHHh--CCC--CCceEeecCeeecCCCCCcCCCCC
Confidence 568999999999753 3333333322 222 22 45678899988 885 99998
No 87
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=74.45 E-value=1.2 Score=46.23 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=21.7
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
.+.+| --|||.|||||..+.+. -+.++++ .+++.+..
T Consensus 24 ~vysG-~~PTG~lHLGn~~g~l~--~~~~lQ~--~~~~~~~I 60 (351)
T 1yi8_B 24 RVLTG-DRPTGALHLGHLAGSLQ--NRVRLQD--EAELFVLL 60 (351)
T ss_dssp EEEEE-ECCSSCCBHHHHHHTHH--HHHHHTS--SSEEEEEE
T ss_pred EEEEe-eCCCCCccHHHHHHHHH--HHHHHHH--hCCeEEEE
Confidence 33334 44589999999988652 2223332 36776543
No 88
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=74.33 E-value=2.1 Score=46.13 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 89 SDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 89 ~k~f~i~~~pP~pn-G~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++++.+.+| --|| |.|||||....+. +.++++..|++|.+..|
T Consensus 153 ~~~~~vy~G-~dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~ 196 (477)
T 1r6t_A 153 KKPFYLYTG-RGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMT 196 (477)
T ss_dssp TCCEEEEEE-ECCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCCcEEEEc-ccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEe
Confidence 567888888 7788 8999999987652 33455547999877654
No 89
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=74.12 E-value=2.3 Score=45.27 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=32.7
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCC--CccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV--KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G--~KMSKS 590 (590)
|-+++...|.||..- =..+-++.- +....| .++.+.++...+| +|||||
T Consensus 255 ~~~~lVpvG~DQ~~~i~l~Rdla~r--~~~~~P--~~l~~pll~gLdG~~~KMSKS 306 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYFRMTRDVAPR--IGYPKP--ALLHSTFFPALQGAQTKMSAS 306 (437)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGG--GTCCCC--EEEEECCCEETTEEEEECCTT
T ss_pred CCceEEEeehhhHHHHHHHHHHHHH--hCCCCc--eEeecccccCCCCCccccCCC
Confidence 445677789999743 333333322 223456 3478899999999 899998
No 90
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=73.83 E-value=2.1 Score=45.66 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=32.1
Q ss_pred CCCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 88 GSDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 88 ~~k~f~i~~~pP~pn-G~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
+++++.+.+| --|| |.|||||....+. +.++++..|+++.+..|
T Consensus 105 ~~~~~~vy~G-~dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIg 149 (437)
T 1r6u_A 105 NKKPFYLYTG-RGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMT 149 (437)
T ss_dssp TTCCEEEEEE-ECCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred cCCCcEEEEc-ccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEe
Confidence 3567888888 7788 8999999986552 33455557999877654
No 91
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=73.82 E-value=1.8 Score=46.06 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 89 SDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 89 ~k~f~i~~~pP~pn-G~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++++.+.+| --|| |.|||||....+. +.++++..|+++++..|
T Consensus 100 g~~~~vy~G-~dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 100 GKPFFLYTG-RGPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT 143 (432)
T ss_dssp TCCCEEEEE-ECCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCCeEEEEe-ecCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe
Confidence 456777777 6788 8999999886542 33555557999888766
No 92
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=73.38 E-value=2.9 Score=43.58 Aligned_cols=51 Identities=24% Similarity=0.189 Sum_probs=33.1
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhcccc-----C-C-CCCcEEEEeceEEeCCC------------------CccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFT-----G-S-VPFSHVYLHGLIRDSQV------------------KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~-----~-~-~Pf~~v~~hG~v~d~~G------------------~KMSKS 590 (590)
|-+|+...|.||..- =+.+-++--+... + . .| .++.+.++...+| +|||||
T Consensus 179 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~--~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS 255 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKP--VAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKS 255 (375)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECC--EEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGS
T ss_pred hCCCeecccchHHHHHHHHHHHHHHhCCcccccccccCcc--EEeccccccCCCCcccccccchhhhhhhhhhhcccCC
Confidence 568999999999743 3333333222110 0 1 34 3567889999998 899998
No 93
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=72.88 E-value=3.4 Score=43.11 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=42.1
Q ss_pred EEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Q 007761 93 VISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWE 172 (590)
Q Consensus 93 ~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G~D~~Gl~ie~~ve~~~~~~g~~~~~~~~e~f~~~~~~ 172 (590)
.+..| --|||.|||||....+. .+.++++ .|+++.+..|= .|++- -...|.++ +.+++
T Consensus 35 ~vy~G-~~PTg~lHlG~yl~~l~--~~~~lQ~-~G~~~~~~iaD-~ha~~--------~~~~g~~~---------e~i~~ 92 (375)
T 2cyc_A 35 QHYIG-FEISGYIHLGTGLMAGA--KIADFQK-AGIKTRVFLAD-WHSWI--------NDKLGGDL---------EVIQE 92 (375)
T ss_dssp BEEEE-ECCCSCCBHHHHHHHHH--HHHHHHH-TTCBCEEEECH-HHHHH--------TTGGGGCH---------HHHHH
T ss_pred EEEeC-CCCCCCcCchHHHHHHH--HHHHHHH-CCCcEEEEecC-cEEEc--------CCCCCCCH---------HHHHH
Confidence 33344 45779999999655432 3445544 59998876542 12110 00001111 22334
Q ss_pred HH-HHHHHHHHHHHHHhCCcCC
Q 007761 173 WK-EKYGGTITSQIKRLGASCD 193 (590)
Q Consensus 173 ~~-~~~~~~~~~~l~~LGi~~D 193 (590)
++ .++...+..++.++|+..+
T Consensus 93 ~~~~~~~~~~~~~~la~G~dp~ 114 (375)
T 2cyc_A 93 VALKYFKVGMEKSIEVMGGDPK 114 (375)
T ss_dssp HHHHTHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 44 4455556688899997654
No 94
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=72.68 E-value=3.6 Score=43.32 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=29.6
Q ss_pred CCCEEEeCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 007761 89 SDPFVISMPPPNVTG-SLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG-~LHiGH~r~~vl~DilaR~~r~~G~~V~~~ 133 (590)
++++.+..| --||| .|||||.... ..+.++++.-|..+...
T Consensus 99 ~~p~~vy~G-~~PTg~~lHLGh~v~~---~~~~~lQ~~~g~~~~i~ 140 (406)
T 3tze_A 99 NRPFYLYTG-RGPSSKTMHIGHTIPF---LLCKYMQDAFKIRLVIQ 140 (406)
T ss_dssp TCCEEEEEE-ECCCSSCCBGGGHHHH---HHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEEe-eCCCCCcccHHHHHHH---HHHHHHHHhcCCcEEEE
Confidence 678888888 78998 7999997664 23344555558877764
No 95
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=72.44 E-value=3 Score=42.06 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=21.9
Q ss_pred CccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-++..+-|.|.+-.-.....+... + + .|.-...-++++++.+|+|||||
T Consensus 184 giThvIrG~D~l~~t~~q~~l~~a-l-G-~~~p~~~H~pll~~~~g~KLSKR 232 (298)
T 1nzj_A 184 GVTEIVRGADLIEPTVRQISLYQL-F-G-WKVPDYIHLPLALNPQGAKLSKQ 232 (298)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHHH-H-T-CCCCEEEEECBCCC---------
T ss_pred CCCEEEeCccccccHHHHHHHHHH-c-C-CCCCeEEEeeeeECCCCCccccc
Confidence 455666699988532222222211 1 1 13346678889889999999997
No 96
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=71.60 E-value=1.8 Score=45.43 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=29.1
Q ss_pred CCCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 89 SDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++++.+.+| --|||.|||||..+.+. +.+++...|++|.+..|
T Consensus 71 ~~p~~i~sG-~~PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia 113 (392)
T 3jxe_A 71 GRGFFLYTG-RGPSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT 113 (392)
T ss_dssp TCCCEEEEE-ECCSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC
T ss_pred CCCeEEEec-cCCCCchhHHHHHHHHH---HHHHHHhcCCceEEEec
Confidence 455666666 55779999999887642 22234447998888765
No 97
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=71.45 E-value=2.7 Score=44.90 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=29.4
Q ss_pred CCCEEEeCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHcCCCeeec
Q 007761 89 SDPFVISMPPPNVT-GSLHMGHAMFVTLEDIMVRYHRMKGRPTLWL 133 (590)
Q Consensus 89 ~k~f~i~~~pP~pn-G~LHiGH~r~~vl~DilaR~~r~~G~~V~~~ 133 (590)
++++.+.+| --|| |.|||||..... .+.++++.-|..+.+.
T Consensus 89 g~p~~vytG-~dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~ 130 (451)
T 3foc_A 89 GHPIYIYTG-RGPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQ 130 (451)
T ss_dssp TCCEEEEEE-ECCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEE
T ss_pred CCCeEEEec-CCCCCCCccHHHHHHHH---HHHHHHHccCceEEEE
Confidence 568888888 7889 889999976543 3444555557777664
No 98
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=71.43 E-value=1.4 Score=45.25 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=21.7
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 100 NVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 100 ~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
-|||.|||||..+.+.. +.+++ .|+++.+..|
T Consensus 9 ~PTG~lHlGn~vg~l~~--~~~lQ--~g~~~~~~Ia 40 (328)
T 1i6k_A 9 QPSGVITIGNYIGALRQ--FVELQ--HEYNCYFCIV 40 (328)
T ss_dssp CCCSCCBHHHHHHTHHH--HHHHT--TTSEEEEEEC
T ss_pred CCCCcccHHHHHHHHHH--HHHHH--cCCcEEEEEe
Confidence 46799999999887632 22333 3999877543
No 99
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=71.00 E-value=3 Score=44.97 Aligned_cols=49 Identities=12% Similarity=-0.009 Sum_probs=32.9
Q ss_pred CCccEEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCC--CccccC
Q 007761 538 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQV--KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G--~KMSKS 590 (590)
|-+++...|.||... =..+-++.- +....|+ ++.+.++...+| +|||||
T Consensus 302 ~~~~~VpvG~DQ~~~i~l~Rdla~r--~~~~~p~--~l~~pll~gLdG~~~KMSKS 353 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYFRMTRDVAPR--IGYPKPA--LLHSTFFPALQGAQTKMSAS 353 (477)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGG--GTCCCCE--EEEECCCEETTEEEEECCTT
T ss_pred CCceeEeccccHHHHHHHHHHHHHH--hCCCCce--eeecccccCCCCCccccCCC
Confidence 455677789999743 333333322 2234563 577899999999 899998
No 100
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=70.72 E-value=2 Score=44.23 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
.-|||.|||||..+.+. -+ +.++..|+++.+..
T Consensus 19 ~~PTG~lHLGn~~g~l~--~~-~~lQ~~G~~~~~~I 51 (340)
T 2g36_A 19 MRPTGKLHIGHLVGALE--NW-VKLQEEGNECFYFV 51 (340)
T ss_dssp ECCCSSCBHHHHHTHHH--HH-HHHHHTTCEEEEEE
T ss_pred eCCCCcccHHhHHHHHH--HH-HHHHHCCCCEEEEE
Confidence 45679999999988642 23 33345699988875
No 101
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=69.96 E-value=2.2 Score=43.39 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=25.7
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
+++.+.+| --|||.||||| +..+. .+.+++ ..|+++.+..|
T Consensus 27 ~~~~vy~G-~~PTg~lHlGh-l~~l~--~~~~lQ-~~g~~~~~~i~ 67 (314)
T 2zp1_A 27 DEKSAYIG-FEPSGKIHLGH-YLQIK--KMIDLQ-NAGFDIIILLA 67 (314)
T ss_dssp SSEEEEEE-ECCCSSCBHHH-HHHHH--HHHHHH-HTTEEEEEEEC
T ss_pred CCCEEEEc-cCCCCCcchhh-HHHHH--HHHHHH-HCCCCEEEEEe
Confidence 34555455 45689999999 55543 333444 45998877654
No 102
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=69.09 E-value=2.8 Score=44.81 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=30.7
Q ss_pred EEEEeechhhH-HHHHHHHhhccccCCCCCcEEEEeceEEeCCCC--ccccC
Q 007761 542 MLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVK--KCQKH 590 (590)
Q Consensus 542 ~~~~G~Dil~~-W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~--KMSKS 590 (590)
+...|.||..- =+.|-++.-+. ...| .++.+.++...+|. |||||
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~rfn--~~~p--~~~~~~~l~gLdG~~~KMSKS 337 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPRMG--HPKN--AYLLGKFLPGLQGSGTKMSAS 337 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTTTT--SCCC--EEEEECCCCBTTBTTCCCCTT
T ss_pred eeeeecchHHHHHHHHHHHHHhC--CCCC--eeecCCcccCCCCCCCccCCC
Confidence 66779999854 34554444332 2234 46778899999986 99999
No 103
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=68.59 E-value=1.8 Score=48.07 Aligned_cols=18 Identities=6% Similarity=-0.022 Sum_probs=14.7
Q ss_pred EEEEeceEEeCCCCccccC
Q 007761 572 HVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 572 ~v~~hG~v~d~~G~KMSKS 590 (590)
..+.||+|+ .+|+|||||
T Consensus 381 ~H~~~g~v~-~~g~KMSKr 398 (592)
T 1iq0_A 381 HHLAYETVL-LEGRQMSGR 398 (592)
T ss_dssp EEEEECCEE-ETTBCSCC-
T ss_pred EEEEeeEEE-cCCCcccCC
Confidence 567899998 589999998
No 104
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=68.40 E-value=3.2 Score=42.77 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=30.0
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhccc----cCCCCCcEEEE-e-ceEEeC-CC-CccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEF----TGSVPFSHVYL-H-GLIRDS-QV-KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l----~~~~Pf~~v~~-h-G~v~d~-~G-~KMSKS 590 (590)
|-+|+...|.||.. +=++|-++--+.. .-..| .-++. | ..+... +| +|||||
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p-~~li~~~~~~l~gL~dg~~KMSKS 211 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIP-EPFIPKAGARVMSLQDPTKKMSKS 211 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCC-EECCCCCCCCCBCSSCTTSBCCTT
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccCCccccc-chhccCCcccCccCCCCccccCCC
Confidence 46889999999984 4445544433221 11233 33432 1 355555 67 599998
No 105
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=67.04 E-value=2.8 Score=43.55 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=25.0
Q ss_pred CEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 91 PFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 91 ~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++.+..| --|||.||||| +..+. .+.+++ ..|+++.+..|
T Consensus 35 ~~~iy~G-~~PTg~lHlG~-l~~l~--~~~~lQ-~~G~~~~~~ia 74 (364)
T 2cya_A 35 RIKGYIG-YEPSGVAHIGW-LVWMY--KVKDLV-EAGVDFSVLEA 74 (364)
T ss_dssp CCEEEEE-ECCCSSCBTHH-HHHHH--HHHHHH-HTTCEEEEEEC
T ss_pred CCEEEec-cCCCCCccHhH-HHHHH--HHHHHH-HCCCCEEEEEe
Confidence 3444444 45689999999 55443 333444 45999888654
No 106
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=66.40 E-value=2.6 Score=44.26 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=8.2
Q ss_pred CCCeeecCCCCCCC
Q 007761 127 GRPTLWLPGTDHAG 140 (590)
Q Consensus 127 G~~V~~~~G~D~~G 140 (590)
|..+...+|+|-.|
T Consensus 62 ~~~~~vy~G~dPTg 75 (392)
T 1y42_X 62 TRRIGAYVGIDPTA 75 (392)
T ss_dssp HCCCEEEEEECCCS
T ss_pred CCCCEEEEeecCCC
Confidence 45556666766544
No 107
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=65.93 E-value=7.3 Score=42.10 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=30.5
Q ss_pred CCccEEEEeechhhHHHHHH-HHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFFWVARM-VMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~W~~~~-~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.-++..+-|.|.+-.=.... +...+. ...| ...-++++++.+|+|||||
T Consensus 202 ~gIthviRG~D~~~~t~~q~~l~~alg--~~~P--~~~H~plil~~~g~KLSKr 251 (492)
T 2cfo_A 202 MGITDVIRGEDHIGNTPKQILLYEALG--ATPP--NFAHTPLILNSTGQKLSKR 251 (492)
T ss_dssp TTCSEEEEEGGGTTHHHHHHHHHHHTT--CCCC--EEEEECCEECSSSSBCCTT
T ss_pred CCCCeEEEchhhhhCHHHHHHHHHHcC--CCCc--eEEEeeeEECCCCCEeccc
Confidence 35677788888885322222 222222 2234 4444588899999999997
No 108
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=64.30 E-value=3.6 Score=42.44 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=26.7
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
+++.+.+| --|||.|||||....+ -.+.++++ .|+++.+..|
T Consensus 39 ~~~~vy~G-~~PTg~lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~ 80 (348)
T 2j5b_A 39 RIFTAYNG-FEPSGRIHIAQALITV--MNTNNMIE-CGGQMIIYIA 80 (348)
T ss_dssp CCEEEEEE-ECCCSSCBHHHHHHHH--HHHHHHHH-TTEEEEEEEC
T ss_pred CCCEEEec-cCCCCCCchhHHHHHH--HHHHHHHH-cCCcEEEEec
Confidence 45555556 5677999999944332 33445554 5999887643
No 109
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=63.64 E-value=7.8 Score=41.74 Aligned_cols=50 Identities=20% Similarity=0.117 Sum_probs=30.1
Q ss_pred CCccEEEEeechhhHHHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.-.+-.+-|.|.+-.-.....+ .-.+....| ...-++++++.+|+||||+
T Consensus 217 ~githvirG~D~~~~t~~q~~l-~~aLG~~~p--~~~H~plil~~~G~KLSKR 266 (481)
T 2o5r_A 217 MEITHVIRGDDHLSNTLRQLAL-YEAFEKAPP--VFAHVSTILGPDGKKLSKR 266 (481)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHH-HHHTTCCCC--EEEEECCEECTTSSBCCGG
T ss_pred CCCCeEEEChhHHHhHHHHHHH-HHHcCCCCC--eEEEEeeEECCCCCcccCc
Confidence 3456678899988432222211 112222345 4445588899999999996
No 110
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=63.43 E-value=3.4 Score=43.08 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCEEEeCCCCCCCCCCCchhhHHHHHHH-HHHHHHHHcCCCeeecCC
Q 007761 90 DPFVISMPPPNVTGSLHMGHAMFVTLED-IMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 90 k~f~i~~~pP~pnG~LHiGH~r~~vl~D-ilaR~~r~~G~~V~~~~G 135 (590)
++..+..| --|||.||||| .++.- .+.++ ...|++|.+..|
T Consensus 55 ~~~~iy~G-~~PTg~lHlG~---gvl~~~~~~~l-Q~~G~~~~~lIa 96 (373)
T 3vgj_A 55 RKLICYDG-FEPSGRMHIAQ---GLLKSIIVNKL-TSNGCTFIFWIA 96 (373)
T ss_dssp SSCEEEEE-ECCCSSCBHHH---HHHHHHHHHHH-HTTTCEEEEEEC
T ss_pred CCceEEeC-CCCCCCceehh---hHHHHHHHHHH-HHCCCcEEEEEe
Confidence 34445555 56789999999 23332 24444 446999888655
No 111
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=62.99 E-value=3 Score=44.19 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=26.4
Q ss_pred CEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 91 ~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
+..+..| --|||+ |||||... --.+.+++ ..||++++..|
T Consensus 30 ~~~iy~G-~dPTg~sLHlGh~v~---l~~l~~lQ-~~G~~~i~lIg 70 (419)
T 2ts1_A 30 RVTLYCG-FDPTADSLHIGHLAT---ILTMRRFQ-QAGHRPIALVG 70 (419)
T ss_dssp CCEEEEE-ECCSSSSCBGGGHHH---HHHHHHHH-HTTCEEEEEEC
T ss_pred CCEEEEe-eCCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEc
Confidence 3444455 567899 99999762 22344544 46999988764
No 112
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=62.76 E-value=4.2 Score=45.43 Aligned_cols=18 Identities=6% Similarity=-0.147 Sum_probs=15.8
Q ss_pred EEEEeceEEeCCCCccccC
Q 007761 572 HVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 572 ~v~~hG~v~d~~G~KMSKS 590 (590)
.++.||+|+ .+|+|||||
T Consensus 411 ~h~~~g~V~-~~~~KMSkr 428 (629)
T 2zue_A 411 YHLAYEHVE-RPEGKFSGR 428 (629)
T ss_dssp EEEEECCEE-BTTBCCCTT
T ss_pred EEEEeeeEE-cCCCcccCC
Confidence 578999998 688999997
No 113
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=62.07 E-value=2.9 Score=42.71 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=25.9
Q ss_pred CEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 91 ~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++.+.+| --|||+ |||||.. . --.+.+++ ..|+++++..|
T Consensus 33 ~~~vy~G-~~PTg~slHlGh~l-~--l~~~~~lQ-~~g~~~~~~i~ 73 (322)
T 2yxn_A 33 PIALVCG-FDPTADSLHLGHLV-P--LLCLKRFQ-QAGHKPVALVG 73 (322)
T ss_dssp CCEEEEE-ECCSSSSCBHHHHH-H--HHHHHHHH-HTTCEEEEEEC
T ss_pred CCEEEEe-ecCCCCcccHHHHH-H--HHHHHHHH-HcCCcEEEEEc
Confidence 3444455 567899 9999976 2 22344444 45999888654
No 114
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=61.43 E-value=2.3 Score=43.87 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=21.6
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
--|||.|||||..+++.. +.+++. |+++.+..
T Consensus 11 ~~PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~I 42 (348)
T 2yy5_A 11 IQASGKQHLGNYLGVMQS--LIELQE--QCQLFVFV 42 (348)
T ss_dssp ECCCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEE
T ss_pred eCCCCcccHHHHHHHHHH--HHHHHh--CCcEEEEE
Confidence 456799999999877632 224443 78877654
No 115
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=61.14 E-value=3 Score=44.20 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=26.8
Q ss_pred CEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 91 ~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++.+.+| --|||+ |||||... --.+.+++ ..||++++..|
T Consensus 32 ~~~iy~G-~dPTg~sLHlGh~v~---l~~~~~lQ-~~G~~~~~lIg 72 (420)
T 1jil_A 32 QVTLYCG-ADPTADSLHIGHLLP---FLTLRRFQ-EHGHRPIVLIG 72 (420)
T ss_dssp CCEEEEE-ECCSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEEC
T ss_pred CCEEEEe-eCCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEc
Confidence 4445556 667899 99999762 22344554 46999988765
No 116
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=61.02 E-value=3.4 Score=43.92 Aligned_cols=40 Identities=28% Similarity=0.471 Sum_probs=26.1
Q ss_pred CEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 91 ~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
+..+.+| --|||+ |||||. ..+. .+.+++ ..|++++++.|
T Consensus 32 ~~~iy~G-~dPTg~sLHLGhl-v~l~--~l~~lQ-~~G~~~i~lIg 72 (432)
T 2jan_A 32 PMTVYAG-FDPTAPSLHAGHL-VPLL--TLRRFQ-RAGHRPIVLAG 72 (432)
T ss_dssp CCEEEEE-ECCSSSSCBGGGH-HHHH--HHHHHH-HTTCEEEEEEC
T ss_pred CCEEEEe-eCCCCCCcCHHHH-HHHH--HHHHHH-HCCCcEEEEEc
Confidence 3445556 667896 999993 3333 355555 46999988754
No 117
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=60.28 E-value=4.1 Score=43.33 Aligned_cols=42 Identities=26% Similarity=0.515 Sum_probs=27.8
Q ss_pred CCCEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 89 SDPFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 89 ~k~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++++.+..| --|||+ |||||.. . --.+.+++ ..||++.+..|
T Consensus 35 ~~~~~vy~G-~dPTg~sLHlGh~v-~--l~~l~~lQ-~~G~~~i~lIg 77 (432)
T 1h3f_A 35 GRPLTVKLG-ADPTRPDLHLGHAV-V--LRKMRQFQ-ELGHKVVLIIG 77 (432)
T ss_dssp CSCCEEEEE-ECTTCCSCBHHHHH-H--HHHHHHHH-HTTCEEEEEEC
T ss_pred CCCcEEEEc-ccCCCCCCchhhHH-H--HHHHHHHH-HCCCCEEEEEc
Confidence 345555556 678985 9999976 2 23444444 46999888765
No 118
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=60.04 E-value=4 Score=42.27 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=26.9
Q ss_pred CEEEeCCCCCCCCC-CCchhhHHHHHHHHHHHHHHHcCCCeeecCC
Q 007761 91 PFVISMPPPNVTGS-LHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (590)
Q Consensus 91 ~f~i~~~pP~pnG~-LHiGH~r~~vl~DilaR~~r~~G~~V~~~~G 135 (590)
++.+.+| --|||+ ||||| ...+. .+.+++ ..|+++++..|
T Consensus 46 ~~~vy~G-~~PTg~sLHLGh-l~~l~--~~~~lQ-~~G~~~~~lIa 86 (356)
T 2pid_A 46 PQTIYCG-FDPTADSLHVGH-LLALL--GLFHLQ-RAGHNVIALVG 86 (356)
T ss_dssp CCEEEEE-ECCSSSSCBHHH-HHHHH--HHHHHH-HTTCEEEEEEC
T ss_pred CCEEEEe-ecCCCCcccHHH-HHHHH--HHHHHH-HCCCcEEEEEc
Confidence 4555566 678997 99999 44443 355555 46999888654
No 119
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=59.75 E-value=2.4 Score=44.48 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCEE----EeCCCCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 90 DPFV----ISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 90 k~f~----i~~~pP~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
++|. |.+| --|||.|||||..+++.. +.+++ .|+++.+..
T Consensus 30 ~p~~m~~ri~sG-~~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~I 73 (388)
T 3prh_A 30 DPFTMKQTIFSG-IQPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCI 73 (388)
T ss_dssp -----CCEEEEE-ECCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEE
T ss_pred CCcccCCeEEEe-eCCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEE
Confidence 5555 6666 678999999999877641 12222 499887754
No 120
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=55.62 E-value=6.1 Score=41.34 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCccEEEEeechhh-HHHHHHHHhhcccc----CCCCCcEEEE--eceEEeC-CC-CccccC
Q 007761 538 YPTTMLETGHDILF-FWVARMVMMGIEFT----GSVPFSHVYL--HGLIRDS-QV-KKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~-~W~~~~~~~~~~l~----~~~Pf~~v~~--hG~v~d~-~G-~KMSKS 590 (590)
|-+|+...|.||.. .=+.|-++.-+... -..| ..++. +..+... +| +|||||
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p-~~li~~~~~~l~gL~dg~~KMSKS 230 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIP-EVKIPKVGARIMSLNDPLKKMSKS 230 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCC-EECCCSCCCCCBCSSCTTSBCCTT
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccc-hhhhcccccccccCCCCCCccCCC
Confidence 57899999999984 44444444322211 1123 22221 2344444 44 799999
No 121
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=55.02 E-value=3.4 Score=42.49 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=21.7
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
--|||.|||||..+++- -+.+++. |+++.+..
T Consensus 13 ~~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~i 44 (341)
T 3sz3_A 13 VQPSGELSIGNYLGALR--QWQQMQD--DYDCQYCV 44 (341)
T ss_dssp ECSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEE
T ss_pred cCCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEE
Confidence 45789999999988762 2334444 57776654
No 122
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=48.77 E-value=18 Score=38.74 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=28.5
Q ss_pred CccEEEEeechhhHHHHHH-HHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILFFWVARM-VMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~W~~~~-~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-++..+-|.|.+-.-.... +.-.+.. ..| ...-+++++|.+|+||||+
T Consensus 199 githvirG~D~~~~t~~q~~l~~alg~--~~p--~~~h~~li~~~~g~klSKR 247 (468)
T 1j09_A 199 GVTDVIRAEEWLVSTPIHVLLYRAFGW--EAP--RFYHMPLLRNPDKTKISKR 247 (468)
T ss_dssp TCCEEEEEGGGGGGHHHHHHHHHHHTC--CCC--EEEEECCCBCTTSCBCCTT
T ss_pred CCCeEEEChhhhhhHHHHHHHHHHcCC--CCC--eEEEeeeeeCCCCCccccc
Confidence 4556677988875322211 2222221 234 3445588899999999997
No 123
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=46.91 E-value=23 Score=38.09 Aligned_cols=48 Identities=17% Similarity=0.067 Sum_probs=29.0
Q ss_pred CccEEEEeechhhHHHHHH-HHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILFFWVARM-VMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~W~~~~-~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-++-.+-|.|.+-.-.... +.-.+. ...| ...-++++++.+|+||||+
T Consensus 211 gIThViRG~D~l~~tp~q~~l~~aLG--~~~P--~f~H~pli~~~~g~KLSKR 259 (488)
T 3afh_A 211 RISHVFRGEDHLSNTPKQLMIYEAFG--WEAP--VFMHIPLILGSDRTPLSKR 259 (488)
T ss_dssp TCSEEEEEGGGGGGHHHHHHHHHHHT--CCCC--EEEEECCEECTTSSBCCTT
T ss_pred CCCEEEEchhhhhCHHHHHHHHHHcC--CCCC--eEEEEeeeeCCCCCcccCc
Confidence 4556677988875322222 222222 2234 4444589999999999997
No 124
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=45.32 E-value=5.4 Score=41.06 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=20.5
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHcCCCeeecC
Q 007761 99 PNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (590)
Q Consensus 99 P~pnG~LHiGH~r~~vl~DilaR~~r~~G~~V~~~~ 134 (590)
--|||.|||||..+.+.. +.++ ..++++.+..
T Consensus 22 ~~PTG~lHLGh~vg~l~~--~~~l--Q~~~~~~~~i 53 (346)
T 3n9i_A 22 AQPSGELTIGNYMGALRQ--WVQM--QDDYDCIYCI 53 (346)
T ss_dssp ECSCSCCBHHHHHHTHHH--HHTT--TTTSEEEEEE
T ss_pred cCCCCcccHHHHHHHHHH--HHHH--HhhCcEEEEE
Confidence 467899999998877521 1222 2467776653
No 125
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=40.14 E-value=34 Score=36.86 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=30.5
Q ss_pred CccEEEEeechhhH-----HHHHHHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILFF-----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~-----W~~~~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-++-.+-|.|.+.. |++..+.. +.+....| ...-+.+++|.+|+||||+
T Consensus 208 githviRG~D~~~~t~~q~~l~~aL~~-~g~g~~~P--~~~h~plil~~~g~KLSKR 261 (498)
T 2ja2_A 208 KITHVLRGEDLLPSTPRQLALHQALIR-IGVAERIP--KFAHLPTVLGEGTKKLSKR 261 (498)
T ss_dssp TCCEEEEEGGGGGGHHHHHHHHHHHHH-TTSCCCCC--EEEEECCEECSSSSBCCTT
T ss_pred CCCEEEEChhhhhccHHHHHHHHHHHh-hcCCCCCC--eEEEeeeeECCCCCccccc
Confidence 45666789888853 34433322 11122334 4445689999999999996
No 126
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=25.86 E-value=34 Score=37.69 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=27.0
Q ss_pred ccEEEEeechhhHHHHHH-HHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 540 TTMLETGHDILFFWVARM-VMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 540 ~d~~~~G~Dil~~W~~~~-~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.+-.+-|.|.+-.-.... +.-.+. ...| ...-++++++.+|+||||+
T Consensus 316 ithvirG~D~~~~t~~q~~l~~alg--~~~P--~~~hlpli~~~~g~KLSKR 363 (592)
T 3al0_C 316 ISHVFRGEDHLSNTPKQLMIYEAFG--WEAP--VFMHIPLILGSDRTPLSKR 363 (592)
T ss_dssp CSBCCEEGGGGGGHHHHHHHHTTTT--CCCC--BCCEECCCBCTTSSBCCTT
T ss_pred CCeEEEchhhHhCHHHHHHHHHHhC--CCCC--eEEEeeeeeCCCCCccccc
Confidence 344456888875422222 222222 2234 3345578899999999997
No 127
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.56 E-value=47 Score=36.23 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=15.8
Q ss_pred CCccEEEEeechhhHHHHHH-HHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 538 YPTTMLETGHDILFFWVARM-VMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 538 ~P~d~~~~G~Dil~~W~~~~-~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
.-++..+-|.|.+-.=.... +...+.. |+-...-+|++ +.+|+|||||
T Consensus 285 ~GIThviRG~D~~~nt~~Q~~l~~alG~----~~P~y~H~~~L-~~~g~KLSKR 333 (553)
T 3aii_A 285 LGVTHVLRGKDHLANREKQEYLYRHLGW----EPPEFIHYGRL-KMDDVALSTS 333 (553)
T ss_dssp TTCCEEEC-----CHHHHHHHHHHHHTC----CCCEEECCCCB-C-------CH
T ss_pred CCCceEeccHhhhhCHHHHHHHHHHcCC----CCCeEEEeeEE-ecCCceechh
Confidence 34566666777663211111 1112221 33344566777 5799999997
No 128
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=20.51 E-value=1.3e+02 Score=32.22 Aligned_cols=48 Identities=17% Similarity=0.053 Sum_probs=29.0
Q ss_pred CccEEEEeechhhHHHHH-HHHhhccccCCCCCcEEEEeceEEeCCCCccccC
Q 007761 539 PTTMLETGHDILFFWVAR-MVMMGIEFTGSVPFSHVYLHGLIRDSQVKKCQKH 590 (590)
Q Consensus 539 P~d~~~~G~Dil~~W~~~-~~~~~~~l~~~~Pf~~v~~hG~v~d~~G~KMSKS 590 (590)
-++-.+-|.|.+-.=+-. .+.-++.. ..| ...-+.+|++.+|+||||+
T Consensus 220 gIThViRG~D~l~~tprq~~l~~aLG~--~~P--~f~HlpLi~~~~g~KLSKR 268 (490)
T 4g6z_A 220 GITHVIRGDDHVNNTPRQINILRALGG--EVP--VYAHLPTVLNEQGEKMSKR 268 (490)
T ss_dssp TCCEEEEEGGGGGGHHHHHHHHHHTTC--CCC--EEEEECCEECTTSSBCCTT
T ss_pred CCCEEEeccccccChHHHHHHHHHcCC--CCC--eEEEecceeCCCCCcccCC
Confidence 455667788887542222 22222222 335 4445678999999999995
Done!