BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007762
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 158/544 (29%), Positives = 245/544 (45%), Gaps = 71/544 (13%)
Query: 17 HFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHL 76
SLE+LD+ I+ ++S+ LK+L++S G S +D C V+L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNL 199
Query: 77 QELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
+ L + +N+ +P+ + + ++L+ L +S N+L+G S + + T ++ L++S+N F
Sbjct: 200 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 257
Query: 137 IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF- 195
PI PL L+ N+ EI L+ L+ L LS + G + P F
Sbjct: 258 GPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 196 -----------------------LYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL 232
L L+ +DLS + +GE P L + +L +L L
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 233 VNDSLAGPF--RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSI 290
+++ +GP L + L+ L + NN F G IP + + L SL++S N L G+I
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI 431
Query: 291 PSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLK 350
PSS G++ L+ L + N L GEIP+ L LE L L N L G + S N TNL
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 351 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGP 410
W+ L N GEIP+ + + L L L+NNS SG IP LG+ L + + N G
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 411 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIE-HVHLSKNMLHGQLKRG-------- 461
IP + Q I+ N I+G ++ H + N+L Q R
Sbjct: 551 IPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 462 -----------------TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
TF N S++ LD+SYN L+G I + + L L LGHN++
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 505 GEVP 508
G +P
Sbjct: 667 GSIP 670
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 132/471 (28%), Positives = 211/471 (44%), Gaps = 68/471 (14%)
Query: 71 CSLVHLQELYIYNNDLRGSLPW--CMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
CS L L + N L G + + + + L+ L VSSN L S + L S+E L
Sbjct: 95 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 129 HLSNNHFQIPISLEPLFNHS--RLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGY 186
LS N + + + LK N+I+ ++ S + +S + S+G
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 213
Query: 187 GDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIH 246
FL L+++D+S K++G+F + + T L+ L + ++ GP +P
Sbjct: 214 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPL 263
Query: 247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFG----------- 295
K L+ L ++ N F G IP + L L++S N G++P FG
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 296 --------------NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMF- 340
M+ L++LD++ N+ +GE+PE L +L L LS+N+ G +
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 341 --SRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398
+N T L+ L L+ N F G+IP +LS C L L L+ N LSG IP LG+L++L+
Sbjct: 384 NLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQL 458
+ + N LEG IP E + L+ L + N+++G +PS
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 484
Query: 459 KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPV 509
N +L + LS NRL G I W+ L L+ L L +N+ G +P
Sbjct: 485 ------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 192/408 (47%), Gaps = 45/408 (11%)
Query: 70 LCSLVHLQELYIYNNDLRGSLPWCMANMT-SLRILYVSSNQLTGSISSSPLVHLT----- 123
L + L+ L + N+ G LP + N++ SL L +SSN +G I L +L
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI----LPNLCQNPKN 391
Query: 124 SIEELHLSNNHF--QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLS 181
+++EL+L NN F +IP +L N S L N ++ I PS +L L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTI---PSSLGSLSKLRDLK 445
Query: 182 LSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF 241
L +G I P+ L + LE + L + GE P+ L N TNL + L N+ L G
Sbjct: 446 LWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEI 503
Query: 242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ 301
I + L +L +SNN+F G+IP E+GD L L+++ N +G+IP++ F Q
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM----FKQ 558
Query: 302 LLDVTNNQLTGEIPEHLAV--------GCVNL-EYLALSNNSLEGHMFSRN-FNLTNLKW 351
+ N + G+ ++ G NL E+ + + L + +RN N+T+
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITS--- 614
Query: 352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPI 411
++ G H + S F L ++ N LSG IP+ +G++ L + + N + G I
Sbjct: 615 -RVYGGHTSPTFDNNGSMMF----LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 412 PVEFCQLDWLQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQL 458
P E L L ILD+S N + G +P L+ + + LS N L G +
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 117/418 (27%), Positives = 184/418 (44%), Gaps = 60/418 (14%)
Query: 23 LLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVH-----LQ 77
LL M ++ L+ SF + E SL LS S TL +S+ L +L LQ
Sbjct: 336 LLKMRGLKV-LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 78 ELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQI 137
ELY+ NN G +P ++N + L L++S N L+G+I SS L L+ + +L L N +
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEG 453
Query: 138 PISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLY 197
I E ++ + L+ N++ EI PS + L+ +SLS+ G I PK++
Sbjct: 454 EIPQELMYVKT-LETLILDFNDLTGEI---PSGLSNCTNLNWISLSNNRLTGEI-PKWIG 508
Query: 198 HQHDLEYVDLSHMKMNGEFPTWL--------LENNTNL------ESLFLVNDSLAGPFRL 243
+L + LS+ +G P L L+ NTNL ++F + +A F
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 568
Query: 244 P--------------------------IHSHKRLRL-----LDISNNNFRGHIPVEIGDV 272
I S + RL +I++ + GH +
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN 332
+F L++S N L G IP G+M +L +L++ +N ++G IP+ + L L LS+
Sbjct: 629 GSMMF-LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSS 686
Query: 333 NSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM-IPR 389
N L+G + LT L + L N+ G IP+ FLNN L G +PR
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 158/544 (29%), Positives = 245/544 (45%), Gaps = 71/544 (13%)
Query: 17 HFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHL 76
SLE+LD+ I+ ++S+ LK+L++S G S +D C V+L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS----GNKISGDVDVSRC--VNL 202
Query: 77 QELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
+ L + +N+ +P+ + + ++L+ L +S N+L+G S + + T ++ L++S+N F
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 260
Query: 137 IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF- 195
PI PL L+ N+ EI L+ L+ L LS + G + P F
Sbjct: 261 GPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 196 -----------------------LYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL 232
L L+ +DLS + +GE P L + +L +L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 233 VNDSLAGPF--RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSI 290
+++ +GP L + L+ L + NN F G IP + + L SL++S N L G+I
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTI 434
Query: 291 PSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLK 350
PSS G++ L+ L + N L GEIP+ L LE L L N L G + S N TNL
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 351 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGP 410
W+ L N GEIP+ + + L L L+NNS SG IP LG+ L + + N G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 411 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIE-HVHLSKNMLHGQLKRG-------- 461
IP + Q I+ N I+G ++ H + N+L Q R
Sbjct: 554 IPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 462 -----------------TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
TF N S++ LD+SYN L+G I + + L L LGHN++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 505 GEVP 508
G +P
Sbjct: 670 GSIP 673
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 132/471 (28%), Positives = 211/471 (44%), Gaps = 68/471 (14%)
Query: 71 CSLVHLQELYIYNNDLRGSLPW--CMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
CS L L + N L G + + + + L+ L VSSN L S + L S+E L
Sbjct: 98 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 129 HLSNNHFQIPISLEPLFNHS--RLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGY 186
LS N + + + LK N+I+ ++ S + +S + S+G
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 216
Query: 187 GDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIH 246
FL L+++D+S K++G+F + + T L+ L + ++ GP +P
Sbjct: 217 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPL 266
Query: 247 SHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFG----------- 295
K L+ L ++ N F G IP + L L++S N G++P FG
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 296 --------------NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMF- 340
M+ L++LD++ N+ +GE+PE L +L L LS+N+ G +
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 341 --SRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398
+N T L+ L L+ N F G+IP +LS C L L L+ N LSG IP LG+L++L+
Sbjct: 387 NLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQL 458
+ + N LEG IP E + L+ L + N+++G +PS
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 487
Query: 459 KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPV 509
N +L + LS NRL G I W+ L L+ L L +N+ G +P
Sbjct: 488 ------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 192/408 (47%), Gaps = 45/408 (11%)
Query: 70 LCSLVHLQELYIYNNDLRGSLPWCMANMT-SLRILYVSSNQLTGSISSSPLVHLT----- 123
L + L+ L + N+ G LP + N++ SL L +SSN +G I L +L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI----LPNLCQNPKN 394
Query: 124 SIEELHLSNNHF--QIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLS 181
+++EL+L NN F +IP +L N S L N ++ I PS +L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTI---PSSLGSLSKLRDLK 448
Query: 182 LSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF 241
L +G I P+ L + LE + L + GE P+ L N TNL + L N+ L G
Sbjct: 449 LWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEI 506
Query: 242 RLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ 301
I + L +L +SNN+F G+IP E+GD L L+++ N +G+IP++ F Q
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM----FKQ 561
Query: 302 LLDVTNNQLTGEIPEHLAV--------GCVNL-EYLALSNNSLEGHMFSRN-FNLTNLKW 351
+ N + G+ ++ G NL E+ + + L + +RN N+T+
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITS--- 617
Query: 352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPI 411
++ G H + S F L ++ N LSG IP+ +G++ L + + N + G I
Sbjct: 618 -RVYGGHTSPTFDNNGSMMF----LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 412 PVEFCQLDWLQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQL 458
P E L L ILD+S N + G +P L+ + + LS N L G +
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 116/417 (27%), Positives = 180/417 (43%), Gaps = 58/417 (13%)
Query: 23 LLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVH-----LQ 77
LL M ++ L+ SF + E SL LS S TL +S+ L +L LQ
Sbjct: 339 LLKMRGLKV-LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 78 ELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQI 137
ELY+ NN G +P ++N + L L++S N L+G+I SS L L+ + +L L N +
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEG 456
Query: 138 PISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLY 197
I E ++ + L+ N++ EI PS + L+ +SLS+ G I PK++
Sbjct: 457 EIPQELMYVKT-LETLILDFNDLTGEI---PSGLSNCTNLNWISLSNNRLTGEI-PKWIG 511
Query: 198 HQHDLEYVDLSHMKMNGEFPTWL--------LENNTNL------ESLFLVNDSLAGPF-- 241
+L + LS+ +G P L L+ NTNL ++F + +A F
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571
Query: 242 ----------RLPIHSHKRLRLLDISN------NNFRGHIPVEIGDVLPG---------- 275
+ H LL+ N P I + G
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 276 --LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN 333
+ L++S N L G IP G+M +L +L++ +N ++G IP+ + L L LS+N
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-DLRGLNILDLSSN 690
Query: 334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM-IPR 389
L+G + LT L + L N+ G IP+ FLNN L G +PR
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 99/243 (40%), Gaps = 49/243 (20%)
Query: 290 IPSSFGNMKFLQLLDVTN-NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTN 348
IPSS N+ +L L + N L G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 349 LKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE 408
L +L + + G IP LS+ L L + N+LSG +P + +L L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 409 GPIPVEFCQLDWL-QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQ---------- 457
G IP + L + IS N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 458 ------LKRGTFFNY------HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 505
K F+ +L LDL NR+ G++ + L L L + NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 506 EVP 508
E+P
Sbjct: 283 EIP 285
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 94/216 (43%), Gaps = 28/216 (12%)
Query: 225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284
T L L++ + +++G + K L LD S N G +P I LP L + N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGN 159
Query: 285 ALDGSIPSSFGNM-KFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGH---MF 340
+ G+IP S+G+ K + ++ N+LTG+IP A +NL ++ LS N LEG +F
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLF 217
Query: 341 SRNFNL--------------------TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 380
+ N NL L L N G +PQ L++ L L ++
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC 416
N+L G IP+ GNL R N P+ C
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 17/244 (6%)
Query: 70 LCSLVHLQELYIYN-NDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
L +L +L LYI N+L G +P +A +T L LY++ ++G+I L + ++ L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTL 130
Query: 129 HLSNNHFQ--IPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGY 186
S N +P S+ L N L N I+ I S + F + +++S
Sbjct: 131 DFSYNALSGTLPPSISSLPN---LVGITFDGNRISGAIPDSYGSFSKLF--TSMTISRNR 185
Query: 187 GDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRL-PI 245
G I P F +L +VDLS + G+ + L ++ N + + L +SLA F L +
Sbjct: 186 LTGKIPPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKV 240
Query: 246 HSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV 305
K L LD+ NN G +P + L L SLN+S N L G IP GN++ +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 306 TNNQ 309
NN+
Sbjct: 299 ANNK 302
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 363 IPQSLSKCFVLEGLFLNN-NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
IP SL+ L L++ N+L G IP + LT+L ++ + ++ G IP Q+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 422 QILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVT-LDLSYNRL 479
LD S N +SG+LP L ++ + N + G + ++ ++ L T + +S NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRL 186
Query: 480 NGSISDWVDGLSQLSHLILGHNNLEGEVPV 509
G I L+ L+ + L N LEG+ V
Sbjct: 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASV 215
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 156/347 (44%), Gaps = 40/347 (11%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P + N+T L + +++NQ+ +PL +LT++ L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 116
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
L NN ++PL N + L +N I ++I+ LT+ L +LS +G+
Sbjct: 117 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLS----FGN 164
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
V K L + LE +D+S K++ +L TNLESL N+ ++ L I ++
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 221
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
L L ++ N + +IG + L L L+++ N + P + L L +
Sbjct: 222 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 272
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
NQ++ P G L L L+ N LE S NL NL +L L N+ P
Sbjct: 273 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 325
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
+S L+ LF NN +S + L NLT + + N + P+
Sbjct: 326 VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 370
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 39/347 (11%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P + N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
L NN ++PL N + L +N I ++I+ LT+ L +LS SS
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLSFSSNQ-- 162
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
V K L + LE +D+S K++ +L TNLESL N+ ++ L I ++
Sbjct: 163 -VTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
L L ++ N + +IG + L L L+++ N + P + L L +
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
NQ++ P G L L L+ N LE S NL NL +L L N+ P
Sbjct: 270 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 322
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
+S L+ LF +NN +S + L NLT + + N + P+
Sbjct: 323 VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 367
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 156/347 (44%), Gaps = 40/347 (11%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P + N+T L + +++NQ+ +PL +LT++ L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 117
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
L NN ++PL N + L +N I ++I+ LT+ L +LS +G+
Sbjct: 118 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLS----FGN 165
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
V K L + LE +D+S K++ +L TNLESL N+ ++ L I ++
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 222
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
L L ++ N + +IG + L L L+++ N + P + L L +
Sbjct: 223 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
NQ++ P G L L L+ N LE S NL NL +L L N+ P
Sbjct: 274 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 326
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
+S L+ LF NN +S + L NLT + + N + P+
Sbjct: 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 371
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 157/347 (45%), Gaps = 40/347 (11%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P + N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
L NN ++PL N + L +N I ++I+ LT+ L +L+ +G+
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLN----FGN 160
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
V K L + LE +D+S K++ +L TNLESL N+ ++ L I ++
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
L L ++ N + +IG + L L L+++ N + P + L L +
Sbjct: 218 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
NQ++ P G L L L+ N LE S NL NL +L L N+ P
Sbjct: 269 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 321
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
+S L+ LF +NN +S + L NLT + + N + P+
Sbjct: 322 VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 156/347 (44%), Gaps = 39/347 (11%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P + N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
L NN ++PL N + L +N I ++I+ LT+ L +LS SS +
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLSFSS---N 161
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
V K L + LE +D+S K++ +L TNLESL N+ ++ L I ++
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
L L ++ N + +IG + L L L+++ N + P + L L +
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
NQ++ P G L L L+ N LE S NL NL +L L N+ P
Sbjct: 270 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 322
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
+S L+ LF NN +S + L NLT + + N + P+
Sbjct: 323 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 367
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 40/347 (11%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P + N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
L NN ++PL N + L +N I ++I+ LT+ L +L+ +G+
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLN----FGN 160
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
V K L + LE +D+S K++ +L TNLESL N+ ++ L I ++
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 217
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
L L ++ N + +IG + L L L+++ N + P + L L +
Sbjct: 218 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
NQ++ P G L L L+ N LE S NL NL +L L N+ P
Sbjct: 269 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 321
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
+S L+ LF NN +S + L NLT + + N + P+
Sbjct: 322 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 366
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 155/347 (44%), Gaps = 39/347 (11%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
G+ L +L ++ NN L P + N+T L + +++NQ+ +PL +LT++ L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---DITPLANLTNLTGL 112
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGD 188
L NN ++PL N + L +N I ++I+ LT+ L +L+ SS
Sbjct: 113 TLFNNQIT---DIDPLKNLTNLNRLELSSNTI-SDISALSGLTS----LQQLNFSSNQ-- 162
Query: 189 GVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSH 248
V K L + LE +D+S K++ +L TNLESL N+ ++ L I ++
Sbjct: 163 -VTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTN 218
Query: 249 KRLRLLDISNNNFRGHIPVEIGDV--LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVT 306
L L ++ N + +IG + L L L+++ N + P + L L +
Sbjct: 219 --LDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 307 NNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS 366
NQ++ P G L L L+ N LE S NL NL +L L N+ P
Sbjct: 270 ANQISNISP---LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-- 322
Query: 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413
+S L+ LF NN +S + L NLT + + N + P+
Sbjct: 323 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPL 367
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 15/191 (7%)
Query: 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 383
N+ YLAL N L H S LTNL +L L GN K L+ L L N L
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 384 SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS-CFHPL 442
+ LT L ++ + N L+ F +L L LD+ DNN SLP F L
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKL 180
Query: 443 S-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD------WVDGLSQLSH 495
+ ++ + L+ N L + G F SL + L N + + SD W+ SQ
Sbjct: 181 TQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI---SQHPG 236
Query: 496 LILGHNNLEGE 506
L+ G+ NL+ +
Sbjct: 237 LVFGYLNLDPD 247
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 43 ESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRI 102
+ + +L YL L+ + L + + + D+ L +L+EL + N L+ +T+L
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDK----LTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
LY+ NQL S+ LT++ L L NN Q
Sbjct: 138 LYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQ 170
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 94 MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVF 153
+A +++L++LY+ NQ+T + SPL LT+++ L + NN L PL N S+L
Sbjct: 131 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTL 184
Query: 154 WAKNNEINAEITQSPSLTAPNF 175
A +N+I ++I SP + PN
Sbjct: 185 RADDNKI-SDI--SPLASLPNL 203
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 70 LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
L L +LQ L I NN + P +AN++ L L N+++ SPL L ++ E+H
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKIS---DISPLASLPNLIEVH 207
Query: 130 LSNNHFQIPISLEPLFNHSRL 150
L +N + PL N S L
Sbjct: 208 LKDNQIS---DVSPLANLSNL 225
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 74/183 (40%), Gaps = 54/183 (29%)
Query: 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 383
N+ YLAL N L H S LTNL +L L GN QSL G+F
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQL-----QSLP-----NGVF------ 105
Query: 384 SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS-CFHPL 442
LT L+ +++ +N L+ SLP F L
Sbjct: 106 --------DKLTNLKELVLVENQLQ-------------------------SLPDGVFDKL 132
Query: 443 S-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 501
+ + +++L+ N L L +G F +L LDLSYN+L D L+QL L L N
Sbjct: 133 TNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 502 NLE 504
L+
Sbjct: 192 QLK 194
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Query: 294 FGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQ 353
F + L+ L + NQL +P+ + NL YL L++N L+ LTNL L
Sbjct: 105 FDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 354 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIP 412
L N K L+ L L N L + LT LQ+I + N + P
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ+ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLARLTKLQNL 181
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
+LS NH +L L N L++F + +N I +L PN
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 225
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N + ++P L LT+LQ++ + KNH+
Sbjct: 140 GNNKITDI-TVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHI 188
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 276 LFSLNISMNALDGSI-PSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNS 334
L L++S NA S+ P++F + L L + L E+ L G L+YL L +N+
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140
Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL 394
L+ +L NL L L GN ++ L+ L L+ N ++ + P +L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 395 TRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDN 429
RL + + N+L +P E L LQ L ++DN
Sbjct: 201 GRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 235
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
+ +FL+ N +S + L + + N L F L L+ LD+SDN
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 434 SL-PSCFHPLSIEH-VHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLS 491
S+ P+ FH L H +HL + L +L G F +L L L N L D L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 492 QLSHLILGHNNLEGEVP 508
L+HL L H N VP
Sbjct: 154 NLTHLFL-HGNRISSVP 169
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
+LS NH +L L N L++F + +N I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 142 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 276 LFSLNISMNALDGSI-PSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNS 334
L L++S NA S+ P++F + L L + L E+ L G L+YL L +N+
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 139
Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL 394
L+ +L NL L L GN ++ L+ L L+ N ++ + P +L
Sbjct: 140 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 395 TRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDN 429
RL + + N+L +P E L LQ L ++DN
Sbjct: 200 GRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDN 234
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
+ +FL+ N +S + L + + N L F L L+ LD+SDN
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 434 SL-PSCFHPLSIEH-VHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLS 491
S+ P+ FH L H +HL + L +L G F +L L L N L D L
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 152
Query: 492 QLSHLILGHNNLEGEVP 508
L+HL L H N VP
Sbjct: 153 NLTHLFL-HGNRISSVP 168
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 5/164 (3%)
Query: 347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH 406
+ K L L+ N ++ + L L+LN+N L + L L+ + + N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 407 LEG-PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFF 464
L+ PI V F QL L L + N + P F L+ + ++ L N L L +G F
Sbjct: 97 LQALPIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 465 NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP 508
SL L L N+L D L++L L L +N L+ VP
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 41 ISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSL 100
+ +S+ L YLSL + L + + D+ L L+EL +YNN L+ +T L
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDK----LTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Query: 101 RILYVSSNQLTGSISSSPLVHLTSIEELHLSNN 133
+ L + +NQL + L ++ L L N
Sbjct: 184 KTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 83/168 (49%), Gaps = 17/168 (10%)
Query: 97 MTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ-IPISL-EPLFNHSRLKVFW 154
+T LR+LY++ N+L ++ + L ++E L +++N Q +PI + + L N + L++
Sbjct: 60 LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL-- 116
Query: 155 AKNNEINAEITQSPSLTAPNFQ-LSRLS-LSSGYGDGVIFPKFLYHQ-HDLEYVDLSHMK 211
+ Q SL F L++L+ LS GY + PK ++ + L+ + L + +
Sbjct: 117 --------DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168
Query: 212 MNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNN 259
+ P + T L++L L N+ L S ++L++L + N
Sbjct: 169 LK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
+LS NH +L L N L++F +N I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELF--SQECLNKPINHQSNLVVPN 227
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 142 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 181
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
+LS NH +L L N L++F + +N I +L PN
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 225
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 140 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 188
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 149 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 203
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
+LS NH +L L N L++F + +N I +L PN
Sbjct: 204 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 247
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 162 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 210
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLACLTKLQNL 178
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
+LS NH +L L N L++F + +N I +L PN
Sbjct: 179 YLSKNHISDLRALCGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 222
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 415
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 137 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHISD--LRAL 191
Query: 416 CQLDWLQILDI 426
C L L +L++
Sbjct: 192 CGLKNLDVLEL 202
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 180
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPN 174
+LS NH +L L N L++F +N I +L PN
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELF--SQECLNKPINHQSNLVVPN 224
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 139 GNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 94 MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVF 153
+A +++L++LY+ NQ+T + SPL LT+++ L + N L PL N S+L
Sbjct: 125 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTL 178
Query: 154 WAKNNEI 160
A +N+I
Sbjct: 179 KADDNKI 185
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 70 LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELH 129
L L +LQ L I N + P +AN++ L L N+++ SPL L ++ E+H
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS---DISPLASLPNLIEVH 201
Query: 130 LSNNHFQIPISLEPLFNHSRLKVFWAKNNEI 160
L NN + PL N S L + N I
Sbjct: 202 LKNNQIS---DVSPLANTSNLFIVTLTNQTI 229
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVF 153
+LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 160 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVF 153
+LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 160 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 178
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVF 153
+LS NH +L L N L++F
Sbjct: 179 YLSKNHISDLRALAGLKNLDVLELF 203
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 137 GNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 185
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEEL 128
GL L L+ LY+ NN + ++ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 129 HLSNNHFQIPISLEPLFNHSRLKVF 153
+LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407
GN+ + +I LS+ L+ L L +N +S ++P L LT+LQ++ + KNH+
Sbjct: 160 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 129/309 (41%), Gaps = 46/309 (14%)
Query: 58 LGTNSSKILDRG-LCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISS 116
LG N K L++ S HL+EL + N + P N+ +LR L + SN+L I
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPL 97
Query: 117 SPLVHLTSIEELHLSNNHFQIPIS--LEPLFNHSRLKVFWAKNNEINAEITQSPSLTA-P 173
L+++ +L +S N I + + L+N L+V N+ + L +
Sbjct: 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV--GDNDLVYISHRAFSGLNSLE 155
Query: 174 NFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNG---------------EFPT 218
L + +L+S I + L H H L + L H+ +N E
Sbjct: 156 QLTLEKCNLTS------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 219 W-LLENNT-------NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIG 270
W L+ T NL SL + + +L L + LR L++S N I G
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN----PISTIEG 265
Query: 271 DVLPGLFSLNISMNALDGSI----PSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+L L L + + G + P +F + +L++L+V+ NQLT + E + NLE
Sbjct: 266 SMLHELLRLQ-EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLE 323
Query: 327 YLALSNNSL 335
L L +N L
Sbjct: 324 TLILDSNPL 332
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 48 LKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSS 107
L++L+LS + + T +L L+ LQE+ + L P+ + LR+L VS
Sbjct: 250 LRFLNLSYNPISTIEGSMLH----ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 108 NQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS 167
NQLT ++ S + ++E L L +N PL RL + + +N Q
Sbjct: 306 NQLT-TLEESVFHSVGNLETLILDSN---------PLACDCRLLWVFRRRWRLNFN-RQQ 354
Query: 168 PSLTAPNF 175
P+ P F
Sbjct: 355 PTCATPEF 362
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 387 IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIE 445
+P + TRL + + KN ++ EF L+ L++++N +S P F+ L ++
Sbjct: 26 VPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 446 HVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
+ L N L + G F +L LD+S N++ + L L L +G N+L
Sbjct: 84 TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 265 IPVEIGDVLPGLFSLNISMNALDGSIPS-SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCV 323
+P + + L L L + N ++ SIPS +F + L+ LD+ + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 383
NL YL N + NLK +IP +L+ LE L L+ N L
Sbjct: 157 NLRYL--------------NLGMCNLK-----------DIP-NLTALVRLEELELSGNRL 190
Query: 384 SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP-SCFHPL 442
+ P LT L+ + + + F L L+ L++S NN+ SLP F PL
Sbjct: 191 DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPL 249
Query: 443 -SIEHVHLSKNMLH 455
+E VHL+ N H
Sbjct: 250 HRLERVHLNHNPWH 263
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGT 60
+ SY N V P + L+L +++ +F E + +L+YL+L L
Sbjct: 122 IPSYAFNRV------PSLRRLDLGELKRLEYISEAAF-----EGLVNLRYLNLGMCNLKD 170
Query: 61 NSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLV 120
+ L +LV L+EL + N L P +TSLR L++ Q+ +I +
Sbjct: 171 IPN------LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFD 223
Query: 121 HLTSIEELHLSNNHF 135
L S+EEL+LS+N+
Sbjct: 224 DLKSLEELNLSHNNL 238
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 34/241 (14%)
Query: 288 GSIPSSFG-NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNL 346
+P+S N ++L L + + + + +HL +LE L LS N + L
Sbjct: 27 AEVPASIPVNTRYLNLQENSIQVIRTDTFKHLR----HLEILQLSKNLVRKIEVGAFNGL 82
Query: 347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRW------------LGNL 394
+L L+L N Q+ L L+L NN + IP + LG L
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGEL 141
Query: 395 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDI---------SDNNISGSLPSCFHPLSIE 445
RL++I + EG + + + L + DI + +SG+ P S +
Sbjct: 142 KRLEYI--SEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 446 HVHLSKNM--LHGQ---LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 500
+ + + +H Q ++R F + SL L+LS+N L D L +L + L H
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNH 259
Query: 501 N 501
N
Sbjct: 260 N 260
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 422 QILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
+ L++ +N+I F H +E + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 481 GSISDWVDGLSQLSHLILGHNNLEG 505
+ + LS+L L L +N +E
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIES 121
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 37/155 (23%)
Query: 9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIIS----ESMPSLKYLSLSDSTLGTNSSK 64
V+R F H + LE+L L+ + ++ I +PSL L L D+ L T ++
Sbjct: 49 VIRTDTFKHLRHLEILQ-------LSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQ 101
Query: 65 ILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL---------YVSSNQLTG--- 112
+ L L+EL++ NN + + + SLR L Y+S G
Sbjct: 102 AFE----YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 113 ---------SISSSP-LVHLTSIEELHLSNNHFQI 137
++ P L L +EEL LS N +
Sbjct: 158 LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDL 192
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPI 411
L L+GN F +P+ LS L + L+NN +S + + N+T+L +++ N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 412 PVEFCQLDWLQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLH 455
P F L L++L + N+IS F+ LS + H+ + N L+
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 245 IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLD 304
+ ++K L L+D+SNN + + + L +L +S N L P +F +K L+LL
Sbjct: 50 LSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 305 VTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL 352
+ N ++ +PE L +LA+ N L + N++WL
Sbjct: 109 LHGNDIS-VVPEGAFNDLSALSHLAIGANPL--------YCDCNMQWL 147
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 34/154 (22%)
Query: 272 VLPGLFSLNISMNALDGS----IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEY 327
VLP +++ LDG+ +P N K L L+D++NN+++
Sbjct: 24 VLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS---------------- 67
Query: 328 LALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMI 387
LSN S N+T L L L N P++ L L L+ N +S +
Sbjct: 68 -TLSNQSFS--------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 388 PRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWL 421
+L+ L H+ + N L C + WL
Sbjct: 119 EGAFNDLSALSHLAIGANPLYCD-----CNMQWL 147
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 28 CTRIALNTSFLQIISE--SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNND 85
C +AL+T+ ++ IS M +L+ LSL G N K ++ L+EL+I N
Sbjct: 51 CKHLALSTNNIEKISSLSGMENLRILSL-----GRNLIKKIENLDAVADTLEELWISYNQ 105
Query: 86 LRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLF 145
+ SL + + +LR+LY+S+N++T L L +E+L L+ N PL+
Sbjct: 106 I-ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN---------PLY 154
Query: 146 NHSR 149
N +
Sbjct: 155 NDYK 158
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 28 CTRIALNTSFLQIISE--SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNND 85
C +AL+T+ ++ IS M +L+ LSL G N K ++ L+EL+I N
Sbjct: 50 CKHLALSTNNIEKISSLSGMENLRILSL-----GRNLIKKIENLDAVADTLEELWISYNQ 104
Query: 86 LRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLF 145
+ SL + + +LR+LY+S+N++T L L +E+L L+ N PL+
Sbjct: 105 I-ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN---------PLY 153
Query: 146 NHSR 149
N +
Sbjct: 154 NDYK 157
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 265 IPVEIGDVLPGLFSLNISMNALDGSIPS-SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCV 323
+P + + L L L + N ++ SIPS +F + L+ LD+ + I E G V
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 383
NL YL N + NLK +IP +L+ LE L L+ N L
Sbjct: 157 NLRYL--------------NLGMCNLK-----------DIP-NLTALVRLEELELSGNRL 190
Query: 384 SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP-SCFHPL 442
+ P LT L+ + + + F L L+ L++S NN+ SLP F PL
Sbjct: 191 DLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPL 249
Query: 443 -SIEHVHLSKNMLH 455
+E VHL+ N H
Sbjct: 250 HRLERVHLNHNPWH 263
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 38/159 (23%)
Query: 14 GFPHFKSLELLDMECTRIALNT-SFLQIISE-----------------SMPSLKYLSLSD 55
G P +LEL D T + +L + E +PSL+ L L +
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 56 ----------STLGTNSSKILDRGLC---------SLVHLQELYIYNNDLRGSLPWCMAN 96
+ G + + L+ G+C +LV L+EL + N L P
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 97 MTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF 135
+TSLR L++ Q+ +I + L S+EEL+LS+N+
Sbjct: 201 LTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 97/241 (40%), Gaps = 34/241 (14%)
Query: 288 GSIPSSFG-NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNL 346
+P+S N ++L L + + + + +HL +LE L LS N + L
Sbjct: 27 AEVPASIPVNTRYLNLQENSIQVIRTDTFKHLR----HLEILQLSKNLVRKIEVGAFNGL 82
Query: 347 TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRW------------LGNL 394
+L L+L N Q+ L L+L NN + IP + LG L
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGEL 141
Query: 395 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDI---------SDNNISGSLPSCFHPLSIE 445
RL++I + EG + + + L + DI + +SG+ P S +
Sbjct: 142 KRLEYI--SEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 446 HVHLSKNM--LHGQ---LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 500
+ + + +H Q ++R F + SL L+LS+N L D L +L + L H
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNH 259
Query: 501 N 501
N
Sbjct: 260 N 260
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 422 QILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
+ L++ +N+I F H +E + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 481 GSISDWVDGLSQLSHLILGHNNLE 504
+ + LS+L L L +N +E
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIE 120
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 42/174 (24%)
Query: 9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIIS----ESMPSLKYLSLSDSTLGTNSSK 64
V+R F H + LE+L L+ + ++ I +PSL L L D+ L T ++
Sbjct: 49 VIRTDTFKHLRHLEILQ-------LSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQ 101
Query: 65 ILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL---------YVSSNQLTG--- 112
+ L L+EL++ NN + + + SLR L Y+S G
Sbjct: 102 AFE----YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 113 ---------SISSSP-LVHLTSIEELHLSNNHFQI--PISLEPLFNHSRLKVFW 154
++ P L L +EEL LS N + P S + L + L+ W
Sbjct: 158 LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL---TSLRKLW 208
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 435
L+LNNN ++ + P +L LQ + N L F +L L LD++DN++
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 436 PSCFHPL-SIEHVHLSKN 452
F L S+ H++L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 77 QELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
Q L++ NN + P ++ +L+ LY +SN+LT +I + LT + +L L++NH +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK 94
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 422 QILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
Q L +++N I+ P F H ++++ ++ + N L + G F L LDL+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94
Query: 481 GSISDWVDGLSQLSHLILGHNNLEGE 506
D L L+H+ L +N + E
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPWDCE 120
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH 358
+ LLD+++N L+ E NL L LS+N L + NL++L L NH
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 359 FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC-- 416
S LE L L NN + + ++ +LQ + + +N + PVE
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKD 158
Query: 417 --QLDWLQILDISDNNIS 432
+L L +LD+S N +
Sbjct: 159 GNKLPKLMLLDLSSNKLK 176
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 130/297 (43%), Gaps = 44/297 (14%)
Query: 43 ESMPSLKYLSLSDSTLGTNSSKILDRG-LCSLVHLQELYIYNNDLRGSLPWCMANMTSLR 101
E + +L+YL+L N ++I D L +LV L LYI N + + N+T+LR
Sbjct: 63 EYLTNLEYLNL-------NGNQITDISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLR 113
Query: 102 ILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEIN 161
LY++ + ++ SPL +LT L+L NH +S PL N + L +++
Sbjct: 114 ELYLNEDNIS---DISPLANLTKXYSLNLGANHNLSDLS--PLSNXTGLNYLTVTESKV- 167
Query: 162 AEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLL 221
++T +LT L LSL+ + I P L L Y ++ P +
Sbjct: 168 KDVTPIANLT----DLYSLSLNYNQIED-ISP--LASLTSLHYFTAYVNQITDITP---V 217
Query: 222 ENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDV-----LPGL 276
N T L SL + N+ + P+ + +L L+I N +I D+ L L
Sbjct: 218 ANXTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTN--------QISDINAVKDLTKL 267
Query: 277 FSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN 333
LN+ N + S S N+ L L + NNQL E E + G NL L LS N
Sbjct: 268 KXLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDXEVIG-GLTNLTTLFLSQN 321
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 30/190 (15%)
Query: 244 PIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLL 303
P+ + L L ++ + + P+ L L+SL+++ N ++ P ++ L
Sbjct: 150 PLSNXTGLNYLTVTESKVKDVTPIA---NLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204
Query: 304 DVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF---- 359
NQ+T P L L + NN + S NL+ L WL++ N
Sbjct: 205 TAYVNQITDITP---VANXTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDIN 259
Query: 360 -VGEIPQ---------SLSKCFVLE------GLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
V ++ + +S VL LFLNNN L +G LT L + +
Sbjct: 260 AVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLS 319
Query: 404 KNHLEGPIPV 413
+NH+ P+
Sbjct: 320 QNHITDIRPL 329
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKN 405
LTNL++L L GN P LS L L++ N ++ + L NLT L+ + + ++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 406 HLEGPIPV 413
++ P+
Sbjct: 121 NISDISPL 128
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 201/493 (40%), Gaps = 78/493 (15%)
Query: 48 LKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSS 107
L++L LS + T I D+ L HL L + N ++ P + +TSL L
Sbjct: 58 LQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113
Query: 108 NQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHS-RLKVFWAK-NNEINAEIT 165
+L S+ S P+ L ++++L++++N F HS +L +++ N ++ +++
Sbjct: 114 TKL-ASLESFPIGQLITLKKLNVAHN-----------FIHSCKLPAYFSNLTNLVHVDLS 161
Query: 166 QS--PSLTAPNFQLSR------LSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFP 217
+ ++T + Q R LSL D + P + + L + + G F
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSL-----DMSLNPIDFIQDQAFQGIKLHELTLRGNF- 215
Query: 218 TWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD--VLPG 275
N++N+ L N LAG +H H RL L F+ +EI + ++ G
Sbjct: 216 -----NSSNIMKTCLQN--LAG-----LHVH-RLIL-----GEFKDERNLEIFEPSIMEG 257
Query: 276 LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG-------EIPEHLA------VGC 322
L + I L + S +KF L +V+ L G ++P+H + C
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317
Query: 323 -------VNLEYL-ALSNNSLEGHMFSRNFNLTNLKWLQLEGN--HFVGEIPQSLSKCFV 372
++L +L +L+ +G + + L +L +L L N F G S
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNI 431
L L L+ N M ++G L LQH+ + L+ F L+ L LDIS N
Sbjct: 378 LRHLDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 432 SGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGL 490
F L S+ + ++ N F N +L LDLS +L D L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 491 SQLSHLILGHNNL 503
+L L + HNNL
Sbjct: 497 HRLQLLNMSHNNL 509
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 122/506 (24%), Positives = 189/506 (37%), Gaps = 95/506 (18%)
Query: 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
S P L+ L LS + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNN---HFQIPISLEPLFNHSRLKVFWAKNNEI 160
L S+ + P+ HL +++EL++++N F++P L N L + K I
Sbjct: 106 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 161 NAE----ITQSPSLTA-----------------PNFQLSRLSLSSGYGDGVIFPKFLYHQ 199
+ Q P L +L +L+L + + + +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 200 HDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLD---- 255
LE H + GEF N NLE +L G L I RL LD
Sbjct: 225 AGLEV----HRLVLGEF-----RNEGNLEKF--DKSALEGLCNLTIEEF-RLAYLDYYLD 272
Query: 256 --------ISNNNFRGHIPVEIGDVLPGLFSLNIS------MNALDGSIPSSFGNMKFLQ 301
++N + + V I V FS N +N G P+ +K L+
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL--KLKSLK 328
Query: 302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN--SLEGHMFSRNFNLTNLKWLQLEGNHF 359
L T+N+ E V +LE+L LS N S +G +F T+LK+L L N
Sbjct: 329 RLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQL 418
+ M +LG L +L+H+ ++L+ F L
Sbjct: 386 IT------------------------MSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 419 DWLQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
L LDIS + + F+ LS +E + ++ N F +L LDLS
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 478 RLNGSISDWVDGLSQLSHLILGHNNL 503
+L + LS L L + HNN
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 41/266 (15%)
Query: 240 PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKF 299
PFR H LR++ S+ +P D+ P L++ N + F N+K
Sbjct: 26 PFRCQCH----LRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKN 77
Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF 359
L L + NN+++ P A V LE L LS N L+
Sbjct: 78 LHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLK----------------------- 113
Query: 360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQ 417
E+P+ + K L+ L ++ N ++ + L ++ + + N L+ G F
Sbjct: 114 --ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 418 LDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
+ L + I+D NI+ ++P P S+ +HL N + ++ + ++L L LS+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN 226
Query: 478 RLNGSISDWVDGLSQLSHLILGHNNL 503
++ + + L L L +N L
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKL 252
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 43 ESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRI 102
+ M L Y+ ++D+ + T + +GL L EL++ N + + + +L
Sbjct: 168 QGMKKLSYIRIADTNITT-----IPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF-QIPISLEPLFNHSRLKVFWAKNNEIN 161
L +S N ++ ++ + L + + ELHL+NN ++P L +H ++V + NN I+
Sbjct: 221 LGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLA---DHKYIQVVYLHNNNIS 276
Query: 162 AEITQSPSLTAPNFQLSRLSLS 183
A S P + + S S
Sbjct: 277 A--IGSNDFCPPGYNTKKASYS 296
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 12/243 (4%)
Query: 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNN 260
D +DL + K+ E +N NL +L L+N+ ++ +L L +S N
Sbjct: 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 261 FRGHIPVEIGDVLPG-LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLA 319
+ E+ + +P L L + N + S F + + ++++ N L E+ A
Sbjct: 112 LK-----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 320 V-GCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFL 378
G L Y+ +++ ++ +LT L L+GN SL L L L
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 379 NNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 438
+ NS+S + L N L+ + + N L +P ++Q++ + +NNIS +
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSND 282
Query: 439 FHP 441
F P
Sbjct: 283 FCP 285
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 201/493 (40%), Gaps = 78/493 (15%)
Query: 48 LKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSS 107
L++L LS + T I D+ L HL L + N ++ P + +TSL L
Sbjct: 53 LQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 108
Query: 108 NQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHS-RLKVFWAK-NNEINAEIT 165
+L S+ S P+ L ++++L++++N F HS +L +++ N ++ +++
Sbjct: 109 TKL-ASLESFPIGQLITLKKLNVAHN-----------FIHSCKLPAYFSNLTNLVHVDLS 156
Query: 166 QS--PSLTAPNFQLSR------LSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFP 217
+ ++T + Q R LSL D + P + + L + + G F
Sbjct: 157 YNYIQTITVNDLQFLRENPQVNLSL-----DMSLNPIDFIQDQAFQGIKLHELTLRGNF- 210
Query: 218 TWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD--VLPG 275
N++N+ L N LAG +H H RL L F+ +EI + ++ G
Sbjct: 211 -----NSSNIMKTCLQN--LAG-----LHVH-RLIL-----GEFKDERNLEIFEPSIMEG 252
Query: 276 LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG-------EIPEHLA------VGC 322
L + I L + S +KF L +V+ L G ++P+H + C
Sbjct: 253 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 312
Query: 323 -------VNLEYL-ALSNNSLEGHMFSRNFNLTNLKWLQLEGN--HFVGEIPQSLSKCFV 372
++L +L +L+ +G + + L +L +L L N F G S
Sbjct: 313 QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 372
Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNI 431
L L L+ N M ++G L LQH+ + L+ F L+ L LDIS N
Sbjct: 373 LRHLDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 431
Query: 432 SGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGL 490
F L S+ + ++ N F N +L LDLS +L D L
Sbjct: 432 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 491
Query: 491 SQLSHLILGHNNL 503
+L L + HNNL
Sbjct: 492 HRLQLLNMSHNNL 504
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 41/266 (15%)
Query: 240 PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKF 299
PFR H LR++ S+ +P D+ P L++ N + F N+K
Sbjct: 26 PFRCQCH----LRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKN 77
Query: 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF 359
L L + NN+++ P A V LE L LS N L+
Sbjct: 78 LHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLK----------------------- 113
Query: 360 VGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQ 417
E+P+ + K L+ L ++ N ++ + L ++ + + N L+ G F
Sbjct: 114 --ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 418 LDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477
+ L + I+D NI+ ++P P S+ +HL N + ++ + ++L L LS+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFN 226
Query: 478 RLNGSISDWVDGLSQLSHLILGHNNL 503
++ + + L L L +N L
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKL 252
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 43 ESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRI 102
+ M L Y+ ++D+ + T + +GL L EL++ N + + + +L
Sbjct: 168 QGMKKLSYIRIADTNITT-----IPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 103 LYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF-QIPISLEPLFNHSRLKVFWAKNNEIN 161
L +S N ++ ++ + L + + ELHL+NN ++P L +H ++V + NN I+
Sbjct: 221 LGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLA---DHKYIQVVYLHNNNIS 276
Query: 162 AEITQSPSLTAPNFQLSRLSLS 183
A S P + + S S
Sbjct: 277 A--IGSNDFCPPGYNTKKASYS 296
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 12/243 (4%)
Query: 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNN 260
D +DL + K+ E +N NL +L L+N+ ++ +L L +S N
Sbjct: 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 261 FRGHIPVEIGDVLPG-LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLA 319
+ E+ + +P L L + N + S F + + ++++ N L E+ A
Sbjct: 112 LK-----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 320 V-GCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFL 378
G L Y+ +++ ++ +LT L L+GN SL L L L
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 379 NNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 438
+ NS+S + L N L+ + + N L +P ++Q++ + +NNIS +
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSND 282
Query: 439 FHP 441
F P
Sbjct: 283 FCP 285
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 125/515 (24%), Positives = 202/515 (39%), Gaps = 79/515 (15%)
Query: 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
S P L+ L LS + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNN---HFQIPISLEPLFNHSRLKVFWAKNNEI 160
L S+ + P+ HL +++EL++++N F++P L N L + K I
Sbjct: 106 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 161 NAE----ITQSPSLTA-----------------PNFQLSRLSLSSGYGDGVIFPKFLYHQ 199
+ Q P L +L +L+L + + + +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 200 HDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLD---- 255
LE H + GEF N NLE +L G L I RL LD
Sbjct: 225 AGLEV----HRLVLGEF-----RNEGNLEK--FDKSALEGLCNLTIEEF-RLAYLDYYLD 272
Query: 256 --------ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFG-----NMKFLQL 302
++N + + V I V FS N L+ + FG +K L+
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLE-LVNCKFGQFPTLKLKSLKR 329
Query: 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNN--SLEGHMFSRNFNLTNLKWLQLEGNHFV 360
L T+N+ E V +LE+L LS N S +G +F T+LK+L L N +
Sbjct: 330 LTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 361 GEIPQSLSKCFV----LEGLFLNNNSLSGMIP-RWLGNLTRLQHIMMPKNHLEGPIPVEF 415
++S F+ LE L +++L M +L L ++ + H F
Sbjct: 387 -----TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 416 CQLDWLQILDISDNNISGS-LPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLD 473
L L++L ++ N+ + LP F L ++ + LS+ L QL F + SL L+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 500
Query: 474 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP 508
++ N+L D L+ L + L N + P
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 422 QILDISDNNISGSLPSCFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
QIL + DN I+ P F L +++ ++L N L G L G F + L LDL N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 481 GSISDWVDGLSQLSHLILGHNNLEGEVP 508
S D L L L + N L E+P
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELP 128
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 72 SLVHLQELYIYNNDLRGSLP-WCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHL 130
SL++L+ELY+ +N L G+LP ++T L +L + +NQLT + S+ L ++EL +
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 131 SNNHF-QIPISLEPL 144
N ++P +E L
Sbjct: 120 CCNKLTELPRGIERL 134
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV 360
Q+L + +NQ+T ++ + +NL+ L L +N L +LT L L L N
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE 408
+ L+ LF+ N L+ + PR + LT L H+ + +N L+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLK 148
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 118/490 (24%), Positives = 196/490 (40%), Gaps = 63/490 (12%)
Query: 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
S P L+ L LS + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 74 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129
Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNN---HFQIPISLEPLFNHSRLKVFWAKNNEI 160
L S+ + P+ HL +++EL++++N F++P L N L + K I
Sbjct: 130 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Query: 161 NAE----ITQSPSLTA-----------------PNFQLSRLSLSSGYGDGVIFPKFLYHQ 199
+ Q P L +L +L+L + + + +
Sbjct: 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 248
Query: 200 HDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNN 259
LE H + GEF N NLE +L G L I RL LD +
Sbjct: 249 AGLEV----HRLVLGEF-----RNEGNLEKF--DKSALEGLCNLTIEEF-RLAYLDYYLD 296
Query: 260 NFRGHIPVEIGDVLPGLFSLNISMNALD--GSIPSSFGNMKFLQLLDVTNNQLTGEIPEH 317
+++ + L + S ++ ++ +FG Q L++ N + G+ P
Sbjct: 297 GI-----IDLFNCLTNVSSFSLVSVTIERVKDFSYNFG----WQHLELVNCKF-GQFP-- 344
Query: 318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN--HFVGEIPQSLSKCFVLEG 375
+ +L+ L ++N G+ FS +L +L++L L N F G QS L+
Sbjct: 345 -TLKLKSLKRLTFTSNK-GGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKY 401
Query: 376 LFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGS 434
L L+ N + M +LG L +L+H+ ++L+ F L L LDIS + +
Sbjct: 402 LDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 435 LPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQL 493
F+ LS +E + ++ N F +L LDLS +L + LS L
Sbjct: 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 494 SHLILGHNNL 503
L + HNN
Sbjct: 521 QVLNMSHNNF 530
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 276 LFSLNISMNA-LDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNS 334
L L++S NA L P++F + L L + L E+ L G L+YL L +N+
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNN 139
Query: 335 LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNL 394
L+ + +L NL L L GN + L+ L L+ N ++ + P +L
Sbjct: 140 LQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDL 199
Query: 395 TRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDN 429
RL + + N+L +P E L LQ L ++DN
Sbjct: 200 GRLMTLYLFANNLSM-LPAEVLVPLRSLQYLRLNDN 234
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 1/170 (0%)
Query: 284 NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN 343
NAL G ++F + L+ LD+++N + G +L L L L+
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 344 FNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
L L++L L+ N+ + L LFL+ N + + L L +++
Sbjct: 125 RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL-SIEHVHLSKN 452
+NH+ P F L L L + NN+S PL S++++ L+ N
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 100/230 (43%), Gaps = 40/230 (17%)
Query: 279 LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG- 337
L +S N + +F + L L++ +N+LT IP V L+ L L NN +E
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI 151
Query: 338 --HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT 395
+ F+R + +L+ L L GE+ + LS ++ EG F L NL
Sbjct: 152 PSYAFNR---IPSLRRLDL------GEL-KRLS--YISEGAF-----------EGLSNLR 188
Query: 396 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSK-NML 454
L M N E P +LD L D+S N++S P F L +HL K M+
Sbjct: 189 YLNLAMC--NLREIPNLTPLIKLDEL---DLSGNHLSAIRPGSFQGL----MHLQKLWMI 239
Query: 455 HGQLK---RGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 501
Q++ R F N SLV ++L++N L D L L + L HN
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 150/370 (40%), Gaps = 68/370 (18%)
Query: 9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDR 68
VL+G P K +L C+ L S+P+L+ L LSD+ LG ++L
Sbjct: 72 VLQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCE 131
Query: 69 GLCS-LVHLQELYIYNNDLRGS----LPWCMANMTSLRILYVSSNQLTGSISSSPLVH-- 121
GL HL++L + L + L + +L+ L VS+N + G + L
Sbjct: 132 GLLDPQCHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDI-GEAGARVLGQGL 190
Query: 122 ---LTSIEELHLSNNHFQIPISLEPLF----NHSRLKVFWAKNNEI-NAEITQ-SPSLTA 172
+E L L N P + + L + + L+ +N + +A I + P L +
Sbjct: 191 ADSACQLETLRLENCGL-TPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLS 249
Query: 173 PNFQLSRLSL------SSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLEN--- 223
P +L L L +SG D + L + L+ + L+ K+ E L E+
Sbjct: 250 PASRLKTLWLWECDITASGCRD---LCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQ 306
Query: 224 -NTNLESLFLVNDSLAGP----FRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFS 278
LESL++ + SL L + +K L L +S+N ++GD G+
Sbjct: 307 PGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSN--------KLGD--SGIQE 356
Query: 279 LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGH 338
L ++ S P + + L +VTN+ GC +L L L+N SL
Sbjct: 357 LCQAL-----SQPGTTLRVLCLGDCEVTNS------------GCSSLASLLLANRSL--- 396
Query: 339 MFSRNFNLTN 348
R +L+N
Sbjct: 397 ---RELDLSN 403
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 68 RGLCSLVHLQELYIYN------NDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVH 121
+ L L HL++L + N LR LP +A + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 122 LTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAE 163
L ++EL L NN Q +++PL + RL + + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 68 RGLCSLVHLQELYIYN------NDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVH 121
+ L L HL++L + N LR LP +A + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 122 LTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAE 163
L ++EL L NN Q +++PL + RL + + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 20/193 (10%)
Query: 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN--HFVG-EIPQSLSKCFVLEGLFLNN 380
NLE L L +N + F ++F NLK L + N H++ E +SL + L L N
Sbjct: 127 NLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINL-SLNFNG 185
Query: 381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGP-IPVEFCQLD-------WLQIL-DISDNNI 431
N++ G+ LG I N P + V F L WL DI D +I
Sbjct: 186 NNVKGI---ELGAFDST--IFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDI 240
Query: 432 SGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLS 491
S ++ +S+E ++L ++ + TF + L LDL+ L G + + GL+
Sbjct: 241 SSAMLKGLCEMSVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLN 298
Query: 492 QLSHLILGHNNLE 504
L L+L N+ +
Sbjct: 299 LLKKLVLSVNHFD 311
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 116/291 (39%), Gaps = 52/291 (17%)
Query: 254 LDISNNNFRGHIPVEIGDVLPGLF---------SLNISMNALDGSIPSSF--GNMKFLQL 302
L+ + NN +G +E+G +F +L++ N L S S G + +
Sbjct: 181 LNFNGNNVKG---IELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDD 237
Query: 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFN-LTNLKWLQLEGNHFVG 361
D+++ L G ++V +NL+ S+ S S F T L+ L L H G
Sbjct: 238 EDISSAMLKGLC--EMSVESLNLQEHRFSDIS------STTFQCFTQLQELDLTATHLKG 289
Query: 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQ-LDW 420
+P + +L+ L L+ N + N L H+ + N + + V + L
Sbjct: 290 -LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN 348
Query: 421 LQILDISDNNISGS------LPSCFH----------PL-----------SIEHVHLSKNM 453
LQ LD+S N+I S L + H PL +E + L+
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 454 LHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
LH + F N H L L+L+Y L+ S + GL L HL L N+ +
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 294 FGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWL 352
F +K L++L++ N++ +I + G NL+ L LS N L G ++S NF L + ++
Sbjct: 286 FETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYI 343
Query: 353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
L+ NH Q+ L+ L L +N+L+ +
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE----GPIPVEFCQLDWLQILDISD 428
L+ L+LN+N L+ + P +LT L+ + + N L +P L+ILDIS
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISR 535
Query: 429 NNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNY--HSLVTL 472
N + P F LS+ + ++ N + + TF N+ H+ VT+
Sbjct: 536 NQLLAPNPDVFVSLSV--LDITHNKFICECELSTFINWLNHTNVTI 579
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 421 LQILDISDNNI--SGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNR 478
LQ LD+S N++ + PSC P + ++LS L Q+ +G L LDLSYNR
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL---PAKLSVLDLSYNR 285
Query: 479 LNGSISDWVDGLSQLSHLILGHN 501
L+ + S D L Q+ +L L N
Sbjct: 286 LDRNPSP--DELPQVGNLSLKGN 306
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 73 LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSN 132
L L +LY+ N L+ +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLST 164
Query: 133 NHFQ 136
N Q
Sbjct: 165 NQLQ 168
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 68/176 (38%), Gaps = 20/176 (11%)
Query: 240 PFRLPIHSHK----RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFG 295
P +P + K L +S+ FRG L L LN+ N L F
Sbjct: 30 PSGIPADTEKLDLQSTGLATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 296 NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWL 352
++ L L + NNQL +P + L+ L L N SL +F R LT LK L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR---LTKLKEL 136
Query: 353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE 408
+L N + K L+ L L+ N L + L +LQ I + N +
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 259 NNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSS-FGNMKFLQLLDVTNNQLTGEIPEH 317
NN +P+ + D L L L + N L S+PS F + L+ L + NQL IP
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAG 149
Query: 318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVL 373
NL+ L+LS N L+ L L+ + L GN F S+C +L
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF------DCSRCEIL 199
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
E L L + L+ + LT+L + + N L+ F L L L +++N ++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 434 SLP-SCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLS 491
SLP F H ++ ++L N L L G F L L L+ N+L + D L+
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 492 QLSHLILGHNNLE 504
L L L N L+
Sbjct: 156 NLQTLSLSTNQLQ 168
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 73 LVHLQELYIYNNDLRGSLP-WCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLS 131
L L +LY+ N L+ SLP +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 132 NNHFQ 136
N Q
Sbjct: 164 TNQLQ 168
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 68/176 (38%), Gaps = 20/176 (11%)
Query: 240 PFRLPIHSHK----RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFG 295
P +P + K L +S+ FRG L L LN+ N L F
Sbjct: 30 PSGIPADTEKLDLQSTGLATLSDATFRG---------LTKLTWLNLDYNQLQTLSAGVFD 80
Query: 296 NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN---SLEGHMFSRNFNLTNLKWL 352
++ L L + NNQL +P + L+ L L N SL +F R LT LK L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR---LTKLKEL 136
Query: 353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE 408
+L N + K L+ L L+ N L + L +LQ I + N +
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433
E L L + L+ + LT+L + + N L+ F L L L +++N ++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 434 SLP-SCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLS 491
SLP F H ++ ++L N L L G F L L L+ N+L + D L+
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 492 QLSHLILGHNNLE 504
L L L N L+
Sbjct: 156 NLQTLSLSTNQLQ 168
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 290 IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNL 349
+P+ N+ L++LD+++N+LT +P L C L+Y +N + + NL NL
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELG-SCFQLKYFYFFDNMVTTLPWEFG-NLCNL 318
Query: 350 KWLQLEGN 357
++L +EGN
Sbjct: 319 QFLGVEGN 326
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN--HFVG-EIPQSLSKCFVLEGLFLNN 380
NLE L L +N + NF NLK L + N H++ + SL + L L N
Sbjct: 129 NLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNL-SLNFNG 187
Query: 381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL------DISDNNISGS 434
N + G+ P ++++ + L I + Q LQ L D D ++ +
Sbjct: 188 NDIKGIEPGAF--ISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSA 245
Query: 435 LPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLS 494
+S+E ++L K+ L TF + + LDL+ LNG + ++G++ L
Sbjct: 246 TFEGLCDMSVESINLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLK 303
Query: 495 HLILGHNNLE 504
L+L N+ +
Sbjct: 304 KLVLNANSFD 313
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 28/230 (12%)
Query: 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG 337
S+N+ + S+F +Q LD+T L G +P + G +L+ L L+ NS +
Sbjct: 257 SINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIE-GMNSLKKLVLNANSFDQ 314
Query: 338 HMFSRNFNLTNLKWLQLEGNHFVGEI-PQSLSKCFVLEGLFLNNNSL--SGMIPRWLGNL 394
+ +L+ L ++GN ++ + L K L+ L L+++ + S L NL
Sbjct: 315 LCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNL 374
Query: 395 TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNML 454
LQ++ + N G F + L++LD++ H+H+
Sbjct: 375 RHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA----------------FTHLHV----- 413
Query: 455 HGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
+ F N H L L+LS+ L+ S + GL L HL L N+ +
Sbjct: 414 --KAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 58 LGTNSSKILDRGLCS-LVHLQELYIYNNDLRGSLPWCMAN-MTSLRILYVSSNQLTGSIS 115
L TNS K L G+ L L +LY+ N L+ SLP + N +TSL L +S+NQL S+
Sbjct: 35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLP 92
Query: 116 SSPLVHLTSIEELHLSNNHFQ 136
+ LT ++EL L+ N Q
Sbjct: 93 NGVFDKLTQLKELALNTNQLQ 113
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 424 LDISDNNISGSLPS-CFHPL-SIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNG 481
LD+ N++ SLP+ F L S+ ++L N L L G F SL L+LS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 482 SISDWVDGLSQLSHLILGHNNLE 504
+ D L+QL L L N L+
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ 113
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
S P L+ L LS + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
L S+ + P+ HL +++EL++++N Q
Sbjct: 106 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQ 137
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
S P L+ L LS + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 51 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
L S+ + P+ HL +++EL++++N Q
Sbjct: 107 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQ 138
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
S P L+ L LS + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 51 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
L S+ + P+ HL +++EL++++N Q
Sbjct: 107 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQ 138
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
S P L+ L LS + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 52 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 107
Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
L S+ + P+ HL +++EL++++N Q
Sbjct: 108 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQ 139
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 154/401 (38%), Gaps = 70/401 (17%)
Query: 112 GSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEIN--AEITQSPS 169
SI PL + ++E L+L +NH I L F +LKV +NN I+ ++ S
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176
Query: 170 LTAPNFQLSR-----LSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENN 224
A N L+ + G D +F + V +K N
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK------------N 224
Query: 225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDV-LPGLFSLNISM 283
+ ++SL+L G F + + DIS F G + + + L + NIS
Sbjct: 225 STIQSLWL------GTF-------EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 284 NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN 343
N +F LQ LD+T L+ E+P L VG L+ L LS N E
Sbjct: 272 N--------TFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISA 321
Query: 344 FNLTNLKWLQLEGNHFVGEIPQ-SLSKCFVLEGLFLNNNSL--SGMIPRWLGNLTRLQHI 400
N +L L ++GN E+ L L L L+++ + S L NL+ LQ +
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381
Query: 401 MMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKR 460
+ N F + L++LD++ F L ++ +
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLA-----------FTRLKVKDA------------Q 418
Query: 461 GTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 501
F N H L L+LS++ L+ S DGL L HL L N
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 30/165 (18%)
Query: 10 LRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRG 69
L+ + F LELLD+ TR+ + + Q +++ LK L+LS S L +S ++ D G
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDA--QSPFQNLHLLKVLNLSHSLLDISSEQLFD-G 447
Query: 70 LCSLVH--LQELYIYNNDLRGS-------------LPWC------MANMTSLRILY---V 105
L +L H LQ + +++ + L +C TSL+++ +
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507
Query: 106 SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPI-SLEPLFNHSR 149
S N+LT S S L HL I L+L++NH I + SL P+ + R
Sbjct: 508 SHNRLTSS-SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 31/114 (27%)
Query: 421 LQILDISDNNISGSLPSCFHPL----------------------------SIEHVHLSKN 452
L+ L++S N I P CFH + SI ++ LS +
Sbjct: 178 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 237
Query: 453 MLHGQLKRGTFF--NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
L TF + +L LDLSYN LN +D L QL + L +NN++
Sbjct: 238 QL-STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 290
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 165/405 (40%), Gaps = 83/405 (20%)
Query: 123 TSIEELHLSNNHFQIPISLEPLFNHS--RLKVFWAKNNEINAEITQSPSLTAPNFQLSRL 180
+S+++L LS+N + P H+ RL + N ++ +T+ L N + L
Sbjct: 176 SSLKKLELSSNQIK---EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 232
Query: 181 SLSSGYGDGVIFPKFL-YHQHDLEYVDLSHMKMN---GEFPTWLLENNTNLESLFLVNDS 236
SLS+ FL +L +DLS+ +N + WL + LE FL ++
Sbjct: 233 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ----LEYFFLEYNN 288
Query: 237 LAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGN 296
+ F +H +R L++ + + +IS+ +L SF
Sbjct: 289 IQHLFSHSLHGLFNVRYLNLKRSFTKQ----------------SISLASLPKIDDFSFQW 332
Query: 297 MKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN-----SLEGHMFSR-------NF 344
+K L+ L++ +N + G I ++ G +NL+YL+LSN+ +L F
Sbjct: 333 LKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 391
Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLE-GLFLNNNSLSGMIPRWLGNLTRL-----Q 398
NLT K ++E + F L VL+ GL L+G R L N+ + +
Sbjct: 392 NLTKNKISKIESDAFSW-----LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 446
Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQL 458
++ + +N +P L L + ++ N+ S PS F PL
Sbjct: 447 YLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPL---------------- 484
Query: 459 KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
+L LDLS N + D ++GL +L L L HNNL
Sbjct: 485 --------RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 521
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 399 HIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHG 456
HI+ +++ IPVE F L L+I+D+ NN++ S F+ +S++ ++L KN++
Sbjct: 544 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 603
Query: 457 QLKRGTFFNYHSLVTLDLSYN 477
K+ + +L LD+ +N
Sbjct: 604 VEKKVFGPAFRNLTELDMRFN 624
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 11/262 (4%)
Query: 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310
+ +L++++N R +P L SL++ N + P + L++L++ +N+L
Sbjct: 37 ITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 311 TGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKC 370
+ ++ + C NL L L +NS++ + NL L L N + +
Sbjct: 96 S-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 154
Query: 371 FVLEGLFLNNNSLSGMIPRWLGNL--TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD 428
L+ L L+NN + + L + L+ + + N ++ P F + L L +++
Sbjct: 155 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 214
Query: 429 NNISGSLPS--CFH--PLSIEHVHLSKNMLHGQLKRGTFF--NYHSLVTLDLSYNRLNGS 482
+ SL C SI ++ LS + L TF + +L LDLSYN LN
Sbjct: 215 VQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTFLGLKWTNLTMLDLSYNNLNVV 273
Query: 483 ISDWVDGLSQLSHLILGHNNLE 504
+D L QL + L +NN++
Sbjct: 274 GNDSFAWLPQLEYFFLEYNNIQ 295
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 165/405 (40%), Gaps = 83/405 (20%)
Query: 123 TSIEELHLSNNHFQIPISLEPLFNHS--RLKVFWAKNNEINAEITQSPSLTAPNFQLSRL 180
+S+++L LS+N + P H+ RL + N ++ +T+ L N + L
Sbjct: 181 SSLKKLELSSNQIK---EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 237
Query: 181 SLSSGYGDGVIFPKFL-YHQHDLEYVDLSHMKMN---GEFPTWLLENNTNLESLFLVNDS 236
SLS+ FL +L +DLS+ +N + WL + LE FL ++
Sbjct: 238 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ----LEYFFLEYNN 293
Query: 237 LAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGN 296
+ F +H +R L++ + + +IS+ +L SF
Sbjct: 294 IQHLFSHSLHGLFNVRYLNLKRSFTKQ----------------SISLASLPKIDDFSFQW 337
Query: 297 MKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN-----SLEGHMFSR-------NF 344
+K L+ L++ +N + G I ++ G +NL+YL+LSN+ +L F
Sbjct: 338 LKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 396
Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLE-GLFLNNNSLSGMIPRWLGNLTRL-----Q 398
NLT K ++E + F L VL+ GL L+G R L N+ + +
Sbjct: 397 NLTKNKISKIESDAFSW-----LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 451
Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQL 458
++ + +N +P L L + ++ N+ S PS F PL
Sbjct: 452 YLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPL---------------- 489
Query: 459 KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
+L LDLS N + D ++GL +L L L HNNL
Sbjct: 490 --------RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 526
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 399 HIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHG 456
HI+ +++ IPVE F L L+I+D+ NN++ S F+ +S++ ++L KN++
Sbjct: 549 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 608
Query: 457 QLKRGTFFNYHSLVTLDLSYN 477
K+ + +L LD+ +N
Sbjct: 609 VEKKVFGPAFRNLTELDMRFN 629
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 31/114 (27%)
Query: 421 LQILDISDNNISGSLPSCFHPL----------------------------SIEHVHLSKN 452
L+ L++S N I P CFH + SI ++ LS +
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232
Query: 453 MLHGQLKRGTFF--NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504
L TF + +L LDLSYN LN +D L QL + L +NN++
Sbjct: 233 QL-STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 165/405 (40%), Gaps = 83/405 (20%)
Query: 123 TSIEELHLSNNHFQIPISLEPLFNHS--RLKVFWAKNNEINAEITQSPSLTAPNFQLSRL 180
+S+++L LS+N + P H+ RL + N ++ +T+ L N + L
Sbjct: 171 SSLKKLELSSNQIK---EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227
Query: 181 SLSSGYGDGVIFPKFL-YHQHDLEYVDLSHMKMN---GEFPTWLLENNTNLESLFLVNDS 236
SLS+ FL +L +DLS+ +N + WL + LE FL ++
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ----LEYFFLEYNN 283
Query: 237 LAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGN 296
+ F +H +R L++ + + +IS+ +L SF
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQ----------------SISLASLPKIDDFSFQW 327
Query: 297 MKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN-----SLEGHMFSR-------NF 344
+K L+ L++ +N + G I ++ G +NL+YL+LSN+ +L F
Sbjct: 328 LKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLE-GLFLNNNSLSGMIPRWLGNLTRL-----Q 398
NLT K ++E + F L VL+ GL L+G R L N+ + +
Sbjct: 387 NLTKNKISKIESDAFSW-----LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441
Query: 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQL 458
++ + +N +P L L + ++ N+ S PS F PL
Sbjct: 442 YLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPL---------------- 479
Query: 459 KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
+L LDLS N + D ++GL +L L L HNNL
Sbjct: 480 --------RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 399 HIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHG 456
HI+ +++ IPVE F L L+I+D+ NN++ S F+ +S++ ++L KN++
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 457 QLKRGTFFNYHSLVTLDLSYN 477
K+ + +L LD+ +N
Sbjct: 599 VEKKVFGPAFRNLTELDMRFN 619
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 296 NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLE 355
NM L+ LDV+ N L + ++ L LS+N L G +F R +K L L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-RCLP-PKVKVLDLH 458
Query: 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIP 412
N + IP+ ++ L+ L + +N L + LT LQ+I + N + P
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 24/130 (18%)
Query: 227 LESLFLVNDSLAGPFRLPIHSH--KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284
L++L L + L F++ + + L LD+S N+ H + LN+S N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 285 ALDGS---------------------IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCV 323
L GS IP +++ LQ L+V +NQL +P+ +
Sbjct: 439 MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLT 497
Query: 324 NLEYLALSNN 333
+L+Y+ L +N
Sbjct: 498 SLQYIWLHDN 507
>pdb|2QM0|A Chain A, Crystal Structure Of Bes Protein From Bacillus Cereus
pdb|2QM0|B Chain B, Crystal Structure Of Bes Protein From Bacillus Cereus
Length = 275
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 270 GDVLPGLFSLNI---SMNALDG---SIPSSFGNMKFL----QLLDVTNNQLTGEIPEHLA 319
G L GLF+L+I ++NA S PS + N K + + L + N E L
Sbjct: 158 GHXLGGLFALHILFTNLNAFQNYFISSPSIWWNNKSVLEKEENLIIELNNAKFETGVFLT 217
Query: 320 VGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSK 369
VG + E+ + N L + N + K+ + EG + +P SLSK
Sbjct: 218 VGSLEREHXVVGANELSERLLQVNHDKLKFKFYEAEGENHASVVPTSLSK 267
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRIL 103
S P L+ L LS + T I D SL HL L + N ++ + ++SL+ L
Sbjct: 52 SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 107
Query: 104 YVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
L S+ + P+ HL +++EL++++N Q
Sbjct: 108 VALETNL-ASLENFPIGHLKTLKELNVAHNLIQ 139
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 35/175 (20%)
Query: 364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI 423
P +L L L N LS + N +L + M N+LE F LQ
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175
Query: 424 LDISDNNIS----GSLPSCFH-------------PLSIEHV---HLSKNMLHGQL----- 458
L +S N ++ +PS FH P+++E + H S N++ G +
Sbjct: 176 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235
Query: 459 ----------KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
NY LV +DLSYN L + + +L L + +N L
Sbjct: 236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 35/175 (20%)
Query: 364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI 423
P +L L L N LS + N +L + M N+LE F LQ
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 424 LDISDNNIS----GSLPSCFH-------------PLSIEHV---HLSKNMLHGQL----- 458
L +S N ++ +PS FH P+++E + H S N++ G +
Sbjct: 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 229
Query: 459 ----------KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
NY LV +DLSYN L + + +L L + +N L
Sbjct: 230 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 310 LTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS 368
L GE+ ++ G +E+ L+N G +++ +T++ WL +E N +G+ Q L+
Sbjct: 101 LIGEVDAEVSTG-DKIEFPVLANGKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLA 158
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 500
P +I + L +N + + G F Y L +DLS N+++ D GL L+ L+L
Sbjct: 31 PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 501 NNLEGEVP 508
N + E+P
Sbjct: 90 NKIT-ELP 96
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 500
P +I + L +N + + G F Y L +DLS N+++ D GL L+ L+L
Sbjct: 31 PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 501 NNLEGEVP 508
N + E+P
Sbjct: 90 NKIT-ELP 96
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 21/189 (11%)
Query: 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALD---GSIPSSFG--NMKFLQL-----L 303
L++ +N + +P + D L L L++S N L S FG ++K+L L +
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 304 DVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI 363
+++N L E EHL NL+ ++ FS +L NL +L + H
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMS---------EFSVFLSLRNLIYLDISHTHTRVAF 142
Query: 364 PQSLSKCFVLEGLFLNNNSLS-GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 422
+ LE L + NS +P L L + + + LE P F L LQ
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 423 ILDISDNNI 431
+L++S NN
Sbjct: 203 VLNMSHNNF 211
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 5/162 (3%)
Query: 346 LTNLKWLQLEGN--HFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403
LT L L L N F G QS L+ L L+ N + M +LG L +L+H+
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 109
Query: 404 KNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRG 461
++L+ F L L LDIS + + F+ LS +E + ++ N
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 462 TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 503
F +L LDLS +L + LS L L + HNN
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 97/242 (40%), Gaps = 44/242 (18%)
Query: 290 IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNL 349
IPS N ++L L++ + + HL +LE L L NS+ L +L
Sbjct: 73 IPS---NTRYLNLMENNIQMIQADTFRHLH----HLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 350 KWLQLEGNHFVGEIP----QSLSKCFVLEGLFLNNNSLSGMIPRW------------LGN 393
L+L N ++ IP + LSK L L+L NN + IP + LG
Sbjct: 126 NTLELFDN-WLTVIPSGAFEYLSK---LRELWLRNNPIES-IPSYAFNRVPSLMRLDLGE 180
Query: 394 LTRLQHIMMPKNHLEGPIPVEFCQLDWLQI--------------LDISDNNISGSLPSCF 439
L +L++I + EG +++ L I L++S N+ P F
Sbjct: 181 LKKLEYI--SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSF 238
Query: 440 HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 499
H LS N ++R F SLV L+L++N L+ D L L L L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298
Query: 500 HN 501
HN
Sbjct: 299 HN 300
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 38 LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM 97
L ++ +++P+L L +S + L + L RGL LQELY+ N+L+ P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLG---ELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH-FQIP 138
L L +++NQLT + + L L +++ L L N + IP
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN L+ +
Sbjct: 114 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 38 LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM 97
L ++ +++P+L L +S + L + L RGL LQELY+ N+L+ P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLG---ELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH-FQIP 138
L L +++NQLT + + L L +++ L L N + IP
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN L+ +
Sbjct: 114 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 38 LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM 97
L ++ +++P+L L +S + L + L RGL LQELY+ N+L+ P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLG---ELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH-FQIP 138
L L +++NQLT + + L L +++ L L N + IP
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN L+ +
Sbjct: 114 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 77 QELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQ 136
Q LY+Y+N + P +T L L + +NQLT + + LT + +L L++N +
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 99
Query: 137 IPISLEPLFNHSRLKVFWAKNN 158
I N L W NN
Sbjct: 100 -SIPRGAFDNLKSLTHIWLLNN 120
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 422 QILDISDNNISGSLPSCFHPLS-IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480
Q+L + DN I+ P F L+ + + L N L L G F L L L+ N+L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQLK 99
Query: 481 GSISDWVDGLSQLSHLILGHN 501
D L L+H+ L +N
Sbjct: 100 SIPRGAFDNLKSLTHIWLLNN 120
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 38 LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM 97
L ++ +++P+L L +S + L + L RGL LQELY+ N+L+ P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLG---ELQELYLKGNELKTLPPGLLTPT 147
Query: 98 TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNH-FQIP 138
L L +++NQLT + + L L +++ L L N + IP
Sbjct: 148 PKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN L+ +
Sbjct: 114 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 273 LPGLFSLNISMNALDGSIPSS-FGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS 331
L L LN+S N L GSI S F N+ L++LD++ N + + + +G NL+ LAL
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALD 379
Query: 332 NNSLEG---HMFSRNFNLTNLKWLQLEGNHFVGEIPQ 365
N L+ +F R LT+L+ + L N + P+
Sbjct: 380 TNQLKSVPDGIFDR---LTSLQKIWLHTNPWDCSCPR 413
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 115/287 (40%), Gaps = 57/287 (19%)
Query: 264 HIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAV--- 320
HIP D+ + LN++ N L P++F L +LD N ++ PE +
Sbjct: 18 HIP---DDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPL 74
Query: 321 -GCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN--HFVGEIPQSLSKCFVLEGLF 377
+NL++ LS S + +F TNL L L N H + P K + L
Sbjct: 75 LKVLNLQHNELSQISDQTFVFC-----TNLTELDLMSNSIHKIKSNPFKNQKNLI--KLD 127
Query: 378 LNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG--PIPVEFCQLDWLQILDISDNNISGSL 435
L++N LS L LQ +++ KN + +EF L+ LD+S N +
Sbjct: 128 LSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFS 187
Query: 436 PSCFHPL----------------------------SIEHVHLSKNMLHGQLKRGTF--FN 465
P CF + SI+++ L+ N L TF
Sbjct: 188 PGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLAT-SESTFSGLK 246
Query: 466 YHSLVTLDLSYNRL----NGSISDWVDGLSQLSHLILGHNNLEGEVP 508
+ +L LDLSYN L NGS S L L +L L +NN++ P
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFS----YLPSLRYLSLEYNNIQRLSP 289
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 87/208 (41%), Gaps = 30/208 (14%)
Query: 14 GFPHFKSLELLDMECTRIALNTS--FLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLC 71
F K LE L+M+ I S F ++ SLKYLSLS + T+ + +
Sbjct: 324 SFQWLKYLEYLNMDDNNIPSTKSNTFTGLV-----SLKYLSLSKTF--TSLQTLTNETFV 376
Query: 72 SLVH--LQELYIYNNDL----RGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSI 125
SL H L L + N + G+ W + LRIL + N++ +S L +I
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFSW----LGQLRILDLGLNEIEQKLSGQEWRGLRNI 432
Query: 126 EELHLS-NNHFQIPIS---LEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLS 181
E++LS N + Q+ S L P L+ KN +I SPS P L+ L
Sbjct: 433 FEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDI------SPSPFRPLRNLTILD 486
Query: 182 LSSGYGDGVIFPKFLYHQHDLEYVDLSH 209
LS+ I L +LE +D H
Sbjct: 487 LSNN-NIANINEDLLEGLENLEILDFQH 513
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 119/323 (36%), Gaps = 70/323 (21%)
Query: 224 NTNLESLFLVNDSLAGPFRLPIHSHK--RLRLLDISNNNFRGHIPVEIGD----VLPGLF 277
NT++++L L N+ L K L LD+S NN ++G+ LP L
Sbjct: 221 NTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH-----DVGNGSFSYLPSLR 275
Query: 278 SLNISMNALDGSIPSSF---GNMKFLQLLDVTNNQLTGEIPEHLAVGCVN------LEYL 328
L++ N + P SF N+++L L Q + + H + + LEYL
Sbjct: 276 YLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQ-SVSLASHPNIDDFSFQWLKYLEYL 334
Query: 329 ALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS-GMI 387
+ +N++ + L +LK+L SLSK F N +S
Sbjct: 335 NMDDNNIPSTKSNTFTGLVSLKYL-------------SLSKTFTSLQTLTNETFVSLAHS 381
Query: 388 PRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP----------- 436
P NLT KNH+ F L L+ILD+ N I L
Sbjct: 382 PLLTLNLT--------KNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIF 433
Query: 437 ------SCFHPLSIEHVHLSKNMLHGQLKRGTFFNY----------HSLVTLDLSYNRLN 480
+ + LS L ++ L+R N +L LDLS N +
Sbjct: 434 EIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIA 493
Query: 481 GSISDWVDGLSQLSHLILGHNNL 503
D ++GL L L HNNL
Sbjct: 494 NINEDLLEGLENLEILDFQHNNL 516
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN+L+ +
Sbjct: 114 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN L+ +
Sbjct: 114 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTEL 163
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 114
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN+L+ +
Sbjct: 115 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 164
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 165 PAGLLNGLENLDTLLLQENSL 185
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 108/310 (34%), Gaps = 83/310 (26%)
Query: 6 VNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKI 65
V+ VL+G P K +L C L ++P+L+ L LSD+ LG ++
Sbjct: 72 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 131
Query: 66 LDRGL----CSLVHLQ-------------------------ELYIYNNDL--RGSLPWCM 94
L GL C L LQ EL + NND+ G C
Sbjct: 132 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ 191
Query: 95 A-----------NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF-QIPIS-L 141
+ S + + L G ++S S+ EL L +N + ++ L
Sbjct: 192 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-----ASLRELALGSNKLGDVGMAEL 246
Query: 142 EPLFNH--SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQ 199
P H SRL+ W I A+ G GD + L +
Sbjct: 247 CPGLLHPSSRLRTLWIWECGITAK---------------------GCGD---LCRVLRAK 282
Query: 200 HDLEYVDLSHMKMNGE----FPTWLLENNTNLESLFLVNDSLAGP----FRLPIHSHKRL 251
L+ + L+ ++ E LLE LESL++ + S F + ++ L
Sbjct: 283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 342
Query: 252 RLLDISNNNF 261
L ISNN
Sbjct: 343 LELQISNNRL 352
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 108/310 (34%), Gaps = 83/310 (26%)
Query: 6 VNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKI 65
V+ VL+G P K +L C L ++P+L+ L LSD+ LG ++
Sbjct: 73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132
Query: 66 LDRGL----CSLVHLQ-------------------------ELYIYNNDL--RGSLPWCM 94
L GL C L LQ EL + NND+ G C
Sbjct: 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ 192
Query: 95 A-----------NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHF-QIPIS-L 141
+ S + + L G ++S S+ EL L +N + ++ L
Sbjct: 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-----ASLRELALGSNKLGDVGMAEL 247
Query: 142 EPLFNH--SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQ 199
P H SRL+ W I A+ G GD + L +
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAK---------------------GCGD---LCRVLRAK 283
Query: 200 HDLEYVDLSHMKMNGE----FPTWLLENNTNLESLFLVNDSLAGP----FRLPIHSHKRL 251
L+ + L+ ++ E LLE LESL++ + S F + ++ L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343
Query: 252 RLLDISNNNF 261
L ISNN
Sbjct: 344 LELQISNNRL 353
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN+L+ +
Sbjct: 114 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN+L+ +
Sbjct: 114 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 267 VEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE 326
+++ LP L +L++S N L S+P + L +LDV+ N+LT
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT--------------- 113
Query: 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386
+L +L G L L+ L L+GN P L+ LE L L NN+L+ +
Sbjct: 114 --SLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Query: 387 IPRWLGNLTRLQHIMMPKNHL 407
L L L +++ +N L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
>pdb|2FK5|A Chain A, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FK5|B Chain B, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|A Chain A, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|B Chain B, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|C Chain C, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|D Chain D, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|E Chain E, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|F Chain F, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|G Chain G, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
pdb|2FLF|H Chain H, Crystal Structure Of L-fuculose-1-phosphate Aldolase From
Thermus Thermophilus Hb8
Length = 200
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 304 DVTNNQLTGEIPEHLAV-GCVNLEYLALSNNSLEGHMFSR-----NFNLTNLKWLQLEGN 357
D+ L G IPE +V V+ E + H R +F+L+ L+ L LEG
Sbjct: 53 DLLEVPLEGPIPEGASVESVVHREVYRRTGARALVHAHPRVAVALSFHLSRLRPLDLEGQ 112
Query: 358 HFVGEIP 364
H++ E+P
Sbjct: 113 HYLKEVP 119
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 500
P + + +HL N + +L+ G F + L L+L+ N+L D L++L+HL L
Sbjct: 39 PTTTQVLHLYINQI-TKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHI 97
Query: 501 NNLE 504
N L+
Sbjct: 98 NQLK 101
>pdb|2WXW|A Chain A, Crystal Structure Of Human Angiotensinogen
Length = 453
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 18/72 (25%)
Query: 351 WLQLEGNHFVGEIPQSLSKCFVL------------EGLFLNNNSLSGMIPRWLGNLT-RL 397
W ++ N V ++P + S C +L EGL NSL+ W+ L+ R
Sbjct: 290 WSDIQDNFSVTQVPFTESACLLLIQPHYASDLDKVEGLTFQQNSLN-----WMKKLSPRT 344
Query: 398 QHIMMPKNHLEG 409
H+ MP+ L+G
Sbjct: 345 IHLTMPQLVLQG 356
>pdb|2X0B|B Chain B, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|D Chain D, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|F Chain F, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|H Chain H, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 452
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 18/72 (25%)
Query: 351 WLQLEGNHFVGEIPQSLSKCFVL------------EGLFLNNNSLSGMIPRWLGNLT-RL 397
W ++ N V ++P + S C +L EGL NSL+ W+ L+ R
Sbjct: 289 WSDIQDNFSVTQVPFTESACLLLIQPHYASDLDKVEGLTFQQNSLN-----WMKKLSPRT 343
Query: 398 QHIMMPKNHLEG 409
H+ MP+ L+G
Sbjct: 344 IHLTMPQLVLQG 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,550,064
Number of Sequences: 62578
Number of extensions: 720649
Number of successful extensions: 2264
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 482
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)