Query 007762
Match_columns 590
No_of_seqs 362 out of 3712
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 09:51:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.7E-64 1.6E-68 552.3 40.1 557 14-587 95-758 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.8E-60 6.3E-65 523.8 40.0 514 3-535 135-724 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-54 1.7E-58 468.9 45.8 545 1-574 32-627 (680)
4 3t6q_A CD180 antigen; protein- 100.0 1.6E-51 5.3E-56 443.2 40.5 495 20-532 34-564 (606)
5 3t6q_A CD180 antigen; protein- 100.0 4.6E-51 1.6E-55 439.5 41.8 500 21-542 14-550 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-49 3.6E-54 434.6 46.2 550 8-578 17-620 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-49 6.5E-54 426.9 38.4 519 8-551 24-557 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-48 3.8E-53 434.6 35.6 506 9-539 18-550 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 9.3E-49 3.2E-53 421.6 34.0 503 21-575 13-564 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 5.3E-46 1.8E-50 397.4 37.2 474 9-534 21-537 (570)
11 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-45 5.2E-50 391.9 35.3 473 8-532 18-514 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-45 5.5E-50 409.2 36.5 503 1-531 31-563 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 9.8E-45 3.4E-49 387.6 31.4 483 1-508 35-535 (570)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-43 4.4E-48 374.2 27.7 453 2-532 8-485 (520)
15 2z81_A CD282 antigen, TOLL-lik 100.0 7.4E-43 2.5E-47 371.1 32.5 483 18-550 4-508 (549)
16 4eco_A Uncharacterized protein 100.0 1.6E-44 5.5E-49 388.0 18.7 359 185-555 192-603 (636)
17 4eco_A Uncharacterized protein 100.0 2E-44 6.7E-49 387.4 18.6 445 19-529 81-601 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-41 4.9E-46 368.1 38.3 527 9-575 45-586 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-43 1.3E-47 370.6 24.7 450 22-550 3-479 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 5.7E-42 1.9E-46 373.8 26.0 312 192-535 507-847 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.8E-41 2.7E-45 355.7 27.6 465 16-532 28-514 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 2.2E-40 7.5E-45 361.3 30.1 356 186-555 435-843 (876)
23 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-39 1.1E-43 349.6 34.4 505 1-529 59-581 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.7E-40 2.3E-44 348.6 27.9 456 44-553 29-511 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2.7E-37 9.2E-42 320.4 32.1 378 74-533 30-413 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 4.9E-37 1.7E-41 315.4 23.7 397 45-540 10-423 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 8.6E-36 2.9E-40 309.0 29.4 367 46-459 30-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 9.1E-36 3.1E-40 306.0 27.4 413 18-538 10-439 (454)
29 1o6v_A Internalin A; bacterial 100.0 5E-34 1.7E-38 295.9 32.7 345 73-529 45-389 (466)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-34 5.1E-39 297.3 26.6 357 44-537 40-396 (457)
31 1o6v_A Internalin A; bacterial 100.0 1.9E-33 6.6E-38 291.5 32.8 347 16-433 43-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 9.7E-34 3.3E-38 291.2 26.4 358 14-511 37-394 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 2.2E-33 7.7E-38 292.5 24.2 321 203-530 14-335 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 3E-33 1E-37 291.5 24.6 341 192-539 26-367 (477)
35 4fmz_A Internalin; leucine ric 100.0 1.3E-31 4.5E-36 267.1 28.6 307 196-528 40-346 (347)
36 3o6n_A APL1; leucine-rich repe 100.0 2.8E-31 9.7E-36 269.0 27.6 310 198-529 43-353 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2.2E-30 7.4E-35 276.7 27.1 310 199-530 50-360 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 2.3E-30 7.7E-35 262.3 25.9 309 176-506 46-354 (390)
39 4fmz_A Internalin; leucine ric 100.0 9.4E-30 3.2E-34 253.7 29.0 303 222-549 41-343 (347)
40 3oja_B Anopheles plasmodium-re 100.0 1.4E-30 4.8E-35 278.2 20.7 330 223-572 49-383 (597)
41 1ogq_A PGIP-2, polygalacturona 100.0 9.1E-31 3.1E-35 256.1 16.4 233 275-534 51-287 (313)
42 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-29 7.8E-34 248.9 24.9 266 250-526 55-331 (332)
43 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-30 7.6E-35 253.4 17.2 252 249-529 50-306 (313)
44 1xku_A Decorin; proteoglycan, 100.0 7.2E-29 2.4E-33 245.3 27.9 290 201-526 32-330 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-33 4E-38 293.6 -8.6 337 192-529 48-441 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.4E-33 243.5 25.6 288 201-502 34-331 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 4.6E-33 1.6E-37 289.1 -8.7 367 19-432 3-411 (461)
48 1xku_A Decorin; proteoglycan, 100.0 1E-27 3.5E-32 237.0 26.5 278 249-539 31-319 (330)
49 3ogk_B Coronatine-insensitive 100.0 2.4E-30 8.4E-35 277.4 2.2 439 37-525 64-548 (592)
50 2z80_A TOLL-like receptor 2, v 99.9 1.6E-27 5.4E-32 237.9 14.5 283 223-532 29-318 (353)
51 2z66_A Variable lymphocyte rec 99.9 6.4E-27 2.2E-31 228.7 17.9 248 252-529 10-262 (306)
52 2z66_A Variable lymphocyte rec 99.9 2.2E-26 7.5E-31 224.9 20.3 249 278-553 11-262 (306)
53 3ogk_B Coronatine-insensitive 99.9 3.2E-29 1.1E-33 268.7 0.0 426 11-449 65-545 (592)
54 3zyj_A Leucine-rich repeat-con 99.9 2.8E-26 9.7E-31 235.8 21.3 249 275-529 44-293 (440)
55 4fcg_A Uncharacterized protein 99.9 2.4E-26 8.2E-31 226.0 19.4 235 273-528 80-314 (328)
56 3zyi_A Leucine-rich repeat-con 99.9 3.5E-26 1.2E-30 236.0 21.4 249 275-529 55-304 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 8.5E-26 2.9E-30 232.2 24.1 248 250-505 44-293 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 9.8E-26 3.3E-30 232.7 23.9 248 250-505 55-304 (452)
59 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-25 5.1E-30 236.9 25.5 268 226-539 41-308 (622)
60 2z80_A TOLL-like receptor 2, v 99.9 1.8E-26 6.2E-31 230.2 16.8 285 198-508 29-318 (353)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-25 5.5E-30 216.3 21.8 226 301-531 14-241 (285)
62 2p1m_B Transport inhibitor res 99.9 2.6E-29 8.8E-34 269.6 -6.7 444 36-527 56-543 (594)
63 4fcg_A Uncharacterized protein 99.9 6.2E-26 2.1E-30 223.1 17.9 219 323-546 81-308 (328)
64 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-25 5E-30 216.6 18.3 258 252-539 14-272 (285)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.3E-27 7.9E-32 232.6 4.6 267 251-533 12-281 (317)
66 2p1m_B Transport inhibitor res 99.9 3.4E-29 1.2E-33 268.7 -9.8 432 10-503 57-543 (594)
67 1wwl_A Monocyte differentiatio 99.9 7.1E-27 2.4E-31 228.6 6.4 248 248-529 42-310 (312)
68 3g06_A SSPH2 (leucine-rich rep 99.9 7.4E-24 2.5E-28 223.9 25.0 268 201-515 41-308 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.9 4E-26 1.4E-30 223.8 4.9 268 201-509 11-281 (317)
70 3oja_A Leucine-rich immune mol 99.9 8.7E-25 3E-29 226.6 11.5 234 275-523 35-270 (487)
71 1wwl_A Monocyte differentiatio 99.9 2.2E-25 7.6E-30 218.0 6.5 248 223-505 41-310 (312)
72 2z62_A TOLL-like receptor 4, v 99.9 4E-23 1.4E-27 198.4 19.4 207 324-532 29-241 (276)
73 2o6q_A Variable lymphocyte rec 99.9 1.2E-22 4.3E-27 194.1 22.3 204 300-531 18-221 (270)
74 3oja_A Leucine-rich immune mol 99.9 4.2E-24 1.5E-28 221.5 9.2 234 226-499 35-270 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 1.3E-22 4.4E-27 194.9 18.9 223 254-506 12-239 (276)
76 3rfs_A Internalin B, repeat mo 99.9 9E-23 3.1E-27 195.3 17.1 211 322-544 40-251 (272)
77 1p9a_G Platelet glycoprotein I 99.9 3.7E-22 1.3E-26 192.4 19.8 202 295-528 7-208 (290)
78 2o6q_A Variable lymphocyte rec 99.9 1.7E-21 6E-26 186.1 22.3 202 250-504 17-218 (270)
79 1p9a_G Platelet glycoprotein I 99.9 7.7E-22 2.6E-26 190.2 19.6 187 345-538 8-194 (290)
80 3rfs_A Internalin B, repeat mo 99.9 2.1E-21 7.1E-26 185.7 16.4 207 274-516 41-247 (272)
81 2xwt_C Thyrotropin receptor; s 99.9 3.7E-21 1.3E-25 180.4 14.6 195 324-525 32-236 (239)
82 3goz_A Leucine-rich repeat-con 99.9 9.5E-23 3.2E-27 203.7 3.6 258 254-532 3-301 (362)
83 2xwt_C Thyrotropin receptor; s 99.9 3.7E-21 1.3E-25 180.4 14.1 201 274-502 31-237 (239)
84 4glp_A Monocyte differentiatio 99.9 1.9E-21 6.4E-26 189.9 12.6 202 322-529 90-308 (310)
85 2ca6_A RAN GTPase-activating p 99.9 5.9E-23 2E-27 207.4 1.9 247 265-532 24-320 (386)
86 3m19_A Variable lymphocyte rec 99.9 3E-20 1E-24 175.5 20.4 158 372-530 36-194 (251)
87 2ast_B S-phase kinase-associat 99.8 5.9E-22 2E-26 196.3 6.7 254 250-537 48-315 (336)
88 1h6u_A Internalin H; cell adhe 99.8 2.7E-20 9.3E-25 181.2 18.0 191 323-529 41-231 (308)
89 3cvr_A Invasion plasmid antige 99.8 9.1E-21 3.1E-25 197.8 15.5 234 324-589 60-300 (571)
90 3goz_A Leucine-rich repeat-con 99.8 1.6E-22 5.4E-27 202.1 1.7 205 227-431 24-265 (362)
91 4glp_A Monocyte differentiatio 99.8 6E-20 2E-24 179.3 19.0 227 200-432 64-307 (310)
92 4ay9_X Follicle-stimulating ho 99.8 5.7E-20 2E-24 182.5 18.7 242 252-525 12-256 (350)
93 3m19_A Variable lymphocyte rec 99.8 9.4E-20 3.2E-24 172.1 18.6 158 348-506 36-194 (251)
94 2ast_B S-phase kinase-associat 99.8 3.7E-21 1.3E-25 190.5 7.5 200 201-430 48-258 (336)
95 1h6u_A Internalin H; cell adhe 99.8 2.3E-19 7.9E-24 174.6 17.4 192 273-505 40-231 (308)
96 2ca6_A RAN GTPase-activating p 99.8 3.7E-21 1.2E-25 194.2 3.2 240 192-432 24-316 (386)
97 2o6s_A Variable lymphocyte rec 99.8 7.3E-19 2.5E-23 160.9 16.1 164 371-542 28-192 (208)
98 2o6s_A Variable lymphocyte rec 99.8 6.2E-19 2.1E-23 161.4 15.3 175 323-532 28-202 (208)
99 4ay9_X Follicle-stimulating ho 99.8 2.5E-18 8.6E-23 170.7 19.1 240 228-477 12-256 (350)
100 1h6t_A Internalin B; cell adhe 99.8 7E-18 2.4E-22 162.6 16.3 173 345-531 44-216 (291)
101 3cvr_A Invasion plasmid antige 99.8 1.1E-17 3.7E-22 174.6 17.2 194 275-514 60-253 (571)
102 2v9t_B SLIT homolog 2 protein 99.8 1.1E-17 3.8E-22 154.0 15.3 135 371-529 32-166 (220)
103 1m9s_A Internalin B; cell inva 99.7 2.8E-17 9.5E-22 173.6 18.8 195 328-538 26-220 (605)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 2.4E-17 8.2E-22 151.8 15.0 136 373-532 34-170 (220)
105 3e6j_A Variable lymphocyte rec 99.7 7.5E-17 2.5E-21 149.6 17.1 137 371-532 40-176 (229)
106 2v9t_B SLIT homolog 2 protein 99.7 2.8E-17 9.7E-22 151.3 13.9 145 374-545 14-158 (220)
107 2xot_A Amphoterin-induced prot 99.7 2.1E-17 7.1E-22 164.7 14.0 129 301-433 21-150 (361)
108 1h6t_A Internalin B; cell adhe 99.7 3.8E-17 1.3E-21 157.5 14.2 170 323-506 46-215 (291)
109 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.4E-22 156.6 12.0 171 346-531 18-188 (263)
110 2xot_A Amphoterin-induced prot 99.7 3.8E-17 1.3E-21 162.8 14.0 175 326-504 21-202 (361)
111 1m9s_A Internalin B; cell inva 99.7 1.5E-16 5.1E-21 168.0 16.6 188 276-480 23-210 (605)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 2.8E-16 9.5E-21 144.6 15.0 111 322-432 56-166 (220)
113 4ezg_A Putative uncharacterize 99.7 1.6E-16 5.4E-21 143.8 12.1 152 346-529 43-195 (197)
114 3sb4_A Hypothetical leucine ri 99.7 2.4E-17 8.3E-22 162.1 7.0 296 17-378 23-328 (329)
115 3e6j_A Variable lymphocyte rec 99.7 1.1E-15 3.7E-20 141.7 17.6 154 325-506 21-174 (229)
116 4ezg_A Putative uncharacterize 99.7 4.7E-16 1.6E-20 140.7 12.5 151 322-504 43-194 (197)
117 4fs7_A Uncharacterized protein 99.7 3E-15 1E-19 151.0 19.5 141 273-423 252-392 (394)
118 4fs7_A Uncharacterized protein 99.7 6.8E-15 2.3E-19 148.5 21.0 314 65-428 62-375 (394)
119 3sb4_A Hypothetical leucine ri 99.6 1.5E-16 5.3E-21 156.4 8.6 220 297-521 100-327 (329)
120 1dce_A Protein (RAB geranylger 99.6 3.5E-18 1.2E-22 179.4 -4.1 201 296-521 347-566 (567)
121 1xeu_A Internalin C; cellular 99.6 3.9E-16 1.3E-20 147.9 9.7 167 325-506 21-187 (263)
122 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.7E-20 133.3 11.9 137 371-534 24-165 (168)
123 4fdw_A Leucine rich hypothetic 99.6 1.6E-14 5.5E-19 144.9 20.0 265 223-526 111-381 (401)
124 1w8a_A SLIT protein; signaling 99.6 5.8E-15 2E-19 132.7 13.2 132 374-532 11-143 (192)
125 4fdw_A Leucine rich hypothetic 99.6 6.1E-14 2.1E-18 140.7 20.7 252 194-479 130-382 (401)
126 2je0_A Acidic leucine-rich nuc 99.6 4.8E-15 1.6E-19 127.4 10.3 127 396-524 18-149 (149)
127 1dce_A Protein (RAB geranylger 99.6 3.4E-17 1.2E-21 171.9 -4.1 180 346-532 348-550 (567)
128 1w8a_A SLIT protein; signaling 99.6 9.1E-15 3.1E-19 131.4 12.0 129 422-552 11-139 (192)
129 2ell_A Acidic leucine-rich nuc 99.6 5.4E-15 1.8E-19 130.0 10.3 138 346-509 23-164 (168)
130 2wfh_A SLIT homolog 2 protein 99.6 1.8E-14 6.1E-19 129.4 12.4 128 398-529 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 125.9 14.0 133 373-532 9-141 (177)
132 2wfh_A SLIT homolog 2 protein 99.6 3.5E-14 1.2E-18 127.5 13.7 108 396-505 32-140 (193)
133 4b8c_D Glucose-repressible alc 99.5 1.4E-15 4.9E-20 164.7 3.8 177 274-460 173-359 (727)
134 2je0_A Acidic leucine-rich nuc 99.5 1.5E-14 5.2E-19 124.3 8.4 128 371-500 17-149 (149)
135 4b8c_D Glucose-repressible alc 99.5 2.3E-15 7.8E-20 163.1 3.5 220 248-480 172-404 (727)
136 1a9n_A U2A', U2A'; complex (nu 99.5 7.3E-14 2.5E-18 123.6 10.0 106 420-529 43-154 (176)
137 4gt6_A Cell surface protein; l 99.5 4.8E-12 1.6E-16 127.5 23.3 102 47-157 65-169 (394)
138 2o6r_A Variable lymphocyte rec 99.5 7.4E-13 2.5E-17 117.3 14.3 128 301-432 10-137 (177)
139 4gt6_A Cell surface protein; l 99.4 1.4E-11 4.8E-16 124.1 23.1 133 364-527 258-390 (394)
140 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.7E-20 137.7 -6.8 132 390-529 43-186 (198)
141 1a9n_A U2A', U2A'; complex (nu 99.4 4.1E-13 1.4E-17 118.8 8.2 131 368-504 16-153 (176)
142 3g39_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 111.9 12.4 108 422-532 12-119 (170)
143 2r9u_A Variable lymphocyte rec 99.3 7.5E-12 2.6E-16 110.1 12.4 106 422-530 15-120 (174)
144 1ds9_A Outer arm dynein; leuci 99.3 9.1E-15 3.1E-19 132.2 -8.2 152 347-505 18-186 (198)
145 3g39_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 106.9 12.3 107 373-506 11-117 (170)
146 2r9u_A Variable lymphocyte rec 99.3 1.9E-11 6.6E-16 107.4 11.7 105 374-505 15-119 (174)
147 4h09_A Hypothetical leucine ri 99.3 6.2E-10 2.1E-14 111.5 22.6 317 14-372 41-357 (379)
148 4h09_A Hypothetical leucine ri 99.3 9E-10 3.1E-14 110.3 23.7 303 44-397 44-358 (379)
149 3un9_A NLR family member X1; l 99.1 8.8E-13 3E-17 131.0 -4.5 66 464-529 180-253 (372)
150 3un9_A NLR family member X1; l 99.1 3.1E-12 1.1E-16 127.0 -4.1 159 274-432 72-252 (372)
151 2ifg_A High affinity nerve gro 99.1 3.8E-10 1.3E-14 111.6 9.7 105 422-529 11-117 (347)
152 2ifg_A High affinity nerve gro 99.0 6.9E-10 2.4E-14 109.7 10.7 105 398-506 11-118 (347)
153 2ra8_A Uncharacterized protein 98.8 2E-09 6.8E-14 105.8 2.9 58 367-427 168-227 (362)
154 2ra8_A Uncharacterized protein 98.7 7.8E-09 2.7E-13 101.6 4.3 142 69-239 167-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 3.8E-09 1.3E-13 93.7 -1.3 117 44-161 34-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 1.1E-08 3.7E-13 90.7 -1.5 122 13-136 30-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.5E-07 5.1E-12 87.5 0.6 40 44-87 168-209 (267)
158 3e4g_A ATP synthase subunit S, 98.2 8.1E-07 2.8E-11 76.4 3.0 84 46-134 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 3.3E-06 1.1E-10 78.4 6.1 57 463-521 192-257 (267)
160 3e4g_A ATP synthase subunit S, 97.9 1.7E-06 5.8E-11 74.4 0.8 83 348-430 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 9.6E-06 3.3E-10 71.1 0.2 115 44-159 39-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 2.6E-05 9.1E-10 68.3 -0.8 121 14-136 36-170 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.0012 4.2E-08 53.9 6.5 56 471-528 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0077 2.6E-07 49.0 6.8 56 446-504 12-68 (130)
165 2lz0_A Uncharacterized protein 72.0 2.5 8.5E-05 32.0 2.8 20 9-28 10-29 (100)
166 2lz0_A Uncharacterized protein 71.9 5 0.00017 30.3 4.6 43 65-108 11-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-64 Score=552.34 Aligned_cols=557 Identities=31% Similarity=0.413 Sum_probs=386.5
Q ss_pred CCCCCCCCCeEeCcCCcCccccccch--HhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCC
Q 007762 14 GFPHFKSLELLDMECTRIALNTSFLQ--IISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLP 91 (590)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 91 (590)
.|+++++|++|++++| .+.+.+|. .+. .+++|++|++++|.+.+ .++...+.++++|++|++++|.+++..+
T Consensus 95 ~~~~l~~L~~L~Ls~n--~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 168 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRN--SLSGPVTTLTSLG-SCSGLKFLNVSSNTLDF---PGKVSGGLKLNSLEVLDLSANSISGANV 168 (768)
T ss_dssp CCCCCTTCCEEECCSS--EEEEEGGGGGGGG-GCTTCCEEECCSSEEEC---CSSCCSCCCCTTCSEEECCSSCCEEETH
T ss_pred hhccCCCCCEEECCCC--cCCCcCCChHHHh-CCCCCCEEECcCCccCC---cCCHHHhccCCCCCEEECCCCccCCcCC
Confidence 5666666666666666 55555555 555 66666666666666544 3333333555556666665555554444
Q ss_pred cc---ccC----------------------CCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCcccccc
Q 007762 92 WC---MAN----------------------MTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFN 146 (590)
Q Consensus 92 ~~---~~~----------------------l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~ 146 (590)
.. +.+ +++|++|++++|.+++.++. +.++++|++|++++|.+.+.++ ..+..
T Consensus 169 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~ 245 (768)
T 3rgz_A 169 VGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFS-RAIST 245 (768)
T ss_dssp HHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHH-HHTTT
T ss_pred hhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCccc-HHHhc
Confidence 33 344 44445555555544433332 4555555555555555543222 34455
Q ss_pred CCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCC-CcccEEEcCCCcCccccchHHhhcCC
Q 007762 147 HSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQ-HDLEYVDLSHMKMNGEFPTWLLENNT 225 (590)
Q Consensus 147 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~~~~~l~ 225 (590)
+++|+.|++++|.+.+..... ...+|++|++ ..+.+.+.+|..+... ++|++|++++|.+.+.+|..+ ..++
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~-----~l~~L~~L~L-~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~ 318 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPL-----PLKSLQYLSL-AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCS 318 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCC-----CCTTCCEEEC-CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCT
T ss_pred CCCCCEEECCCCcccCccCcc-----ccCCCCEEEC-cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCC
Confidence 555555555555554332221 2336777777 5666666666666553 777777777777776666664 6777
Q ss_pred CCcEEEccCCCCCCCCcCC-CCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCC--CCCCcE
Q 007762 226 NLESLFLVNDSLAGPFRLP-IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGN--MKFLQL 302 (590)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~--l~~L~~ 302 (590)
+|+.|++++|.+.+.++.. +..+++|++|++++|.+++.+|..+....++|++|++++|.+++.+|..+.. +++|++
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 7777777777776555543 6677777777777777776777776663347777777777777766666665 677888
Q ss_pred EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCc
Q 007762 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS 382 (590)
Q Consensus 303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 382 (590)
|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 399 L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 88888887766666654 47888888888888877777778888888888888888887788888888888888888888
Q ss_pred ccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCcc
Q 007762 383 LSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRG 461 (590)
Q Consensus 383 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~ 461 (590)
+++.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+. +++|+.|++++|.+.+.+|..
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 8877888888888888888888888878888888888888888888888777776554 678888888888877666643
Q ss_pred c---------------------------------------------------------------------cccCCCCcEE
Q 007762 462 T---------------------------------------------------------------------FFNYHSLVTL 472 (590)
Q Consensus 462 ~---------------------------------------------------------------------~~~~~~L~~L 472 (590)
. +..+++|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 2 3345778999
Q ss_pred EcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccc----cccCCC
Q 007762 473 DLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE----SYSNSS 548 (590)
Q Consensus 473 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~----~~~~~~ 548 (590)
|+++|++++.+|..++.+++|++|+|++|++++.+|..+..+++|+.||+++|+++|.+|..+..++.++ ++|..+
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998887444 445555
Q ss_pred CCCCccce--eccccCCCCCCCCCcccccCCCCCCCCcccc
Q 007762 549 SPNKQFEI--FFFIQGPQGHPRLATLVMNQHSPAQGHEDLE 587 (590)
Q Consensus 549 ~~~~~~~~--~~~~~~~~~np~~~~~~~~~~~~~~~~~~~~ 587 (590)
|++|.... .+...+|.|||.+||..+...+...+.+..+
T Consensus 718 g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~ 758 (768)
T 3rgz_A 718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 758 (768)
T ss_dssp EECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC------
T ss_pred ccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCC
Confidence 55554322 2345678999999998877544444444443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-60 Score=523.81 Aligned_cols=514 Identities=30% Similarity=0.411 Sum_probs=439.4
Q ss_pred CCccccccCCCCCCCCCCCCeEeCcCCcCccccccchH---hhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEE
Q 007762 3 SYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQI---ISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQEL 79 (590)
Q Consensus 3 ~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L 79 (590)
+|.+.|.+|...+.++++|++|++++| .+.+..+.. +. .+++|++|++++|.+.+ .. .+..+++|++|
T Consensus 135 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~---~~---~~~~l~~L~~L 205 (768)
T 3rgz_A 135 SNTLDFPGKVSGGLKLNSLEVLDLSAN--SISGANVVGWVLSD-GCGELKHLAISGNKISG---DV---DVSRCVNLEFL 205 (768)
T ss_dssp SSEEECCSSCCSCCCCTTCSEEECCSS--CCEEETHHHHHHTT-CCTTCCEEECCSSEEES---CC---BCTTCTTCCEE
T ss_pred CCccCCcCCHHHhccCCCCCEEECCCC--ccCCcCChhhhhhc-cCCCCCEEECCCCcccc---cC---CcccCCcCCEE
Confidence 444444444333344455555555555 333333333 23 55666666666665543 22 23678899999
Q ss_pred EeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCc
Q 007762 80 YIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNE 159 (590)
Q Consensus 80 ~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~ 159 (590)
++++|.+.+..|. +.++++|++|++++|.+++.++. .+.++++|++|++++|.+.+.++.. .+++|+.|++++|.
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENK 280 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCc
Confidence 9999999877776 99999999999999999877776 7899999999999999998666543 88999999999999
Q ss_pred ccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCC
Q 007762 160 INAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG 239 (590)
Q Consensus 160 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 239 (590)
+.+..+..... ...+|+.|++ ..+.+.+..|..+..+++|++|++++|.+.+.+|...+..+++|+.|++++|.+.+
T Consensus 281 l~~~ip~~~~~--~~~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 281 FTGEIPDFLSG--ACDTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp EEESCCCCSCT--TCTTCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred cCCccCHHHHh--hcCcCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 87655443221 1258999999 88888889999999999999999999999989998867899999999999999998
Q ss_pred CCcCCCCCCC-cccEEEccCCcCCCCCchhhhhc-CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchh
Q 007762 240 PFRLPIHSHK-RLRLLDISNNNFRGHIPVEIGDV-LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEH 317 (590)
Q Consensus 240 ~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 317 (590)
..+..+..++ +|+.|++++|.+++.++..+... +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 8888888887 99999999999988787776532 578999999999999999999999999999999999999888877
Q ss_pred hhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCc
Q 007762 318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL 397 (590)
Q Consensus 318 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 397 (590)
+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.+|..+..+++|
T Consensus 438 l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 438 LG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred Hh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 65 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-------------------------------------
Q 007762 398 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH------------------------------------- 440 (590)
Q Consensus 398 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------- 440 (590)
+.|++++|++.+.+|..+..+++|++|++++|.+++.+|..+.
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999876664321
Q ss_pred ----------------------------------CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccc
Q 007762 441 ----------------------------------PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDW 486 (590)
Q Consensus 441 ----------------------------------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 486 (590)
+.+|+.|++++|.+++.+|.. +..+++|+.|+|++|.+++.+|..
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCCccCCCCChH
Confidence 356899999999999999987 999999999999999999999999
Q ss_pred ccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCcccc
Q 007762 487 VDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCF 535 (590)
Q Consensus 487 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 535 (590)
++.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..-
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 9999999999999999999999999999999999999999999999763
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.9e-54 Score=468.85 Aligned_cols=545 Identities=21% Similarity=0.197 Sum_probs=415.2
Q ss_pred CCCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEE
Q 007762 1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELY 80 (590)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ 80 (590)
+++|++.+..+ .+|+++++|++|++++| .+.+..|..+. .+++|++|++++|.++. +++.+|.++++|++|+
T Consensus 32 Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 32 LTHNQLRRLPA-ANFTRYSQLTSLDVGFN--TISKLEPELCQ-KLPMLKVLNLQHNELSQ----LSDKTFAFCTNLTELH 103 (680)
T ss_dssp CCSSCCCCCCG-GGGGGGTTCSEEECCSS--CCCCCCTTHHH-HCTTCCEEECCSSCCCC----CCTTTTTTCTTCSEEE
T ss_pred CCCCCCCCcCH-HHHhCCCcCcEEECCCC--ccCccCHHHHh-cccCcCEEECCCCccCc----cChhhhccCCCCCEEE
Confidence 35666666444 67888889999999888 55666677776 88889999998888865 6766788888899999
Q ss_pred eecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCcccc--ccCCCccEEEccCC
Q 007762 81 IYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPL--FNHSRLKVFWAKNN 158 (590)
Q Consensus 81 L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l--~~l~~L~~l~l~~~ 158 (590)
+++|.+.+..+..|.++++|++|++++|.+++..+. .+.++++|++|++++|.+.+. +...+ ..+++|+.|++++|
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccccc-CHHHhhccccccccEEECCCC
Confidence 998888866667888888999999998888744443 678888899999988887633 22333 35678888888888
Q ss_pred cccccccCCCCCC------------------------CCCcccceEeccCCCCCCCcCChhccCCCc--ccEEEcCCCcC
Q 007762 159 EINAEITQSPSLT------------------------APNFQLSRLSLSSGYGDGVIFPKFLYHQHD--LEYVDLSHMKM 212 (590)
Q Consensus 159 ~~~~~~~~~~~~~------------------------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~--L~~L~ls~~~~ 212 (590)
.+........... ....+++.|++ ..+.+.+..+..+..++. |++|++++|.+
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L-~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL-SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC-TTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc-cCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 7765433211100 01146778888 677777777777777654 99999999988
Q ss_pred ccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCC-----Cch---hhhhcCCCCcEEEccCc
Q 007762 213 NGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGH-----IPV---EIGDVLPGLFSLNISMN 284 (590)
Q Consensus 213 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~---~~~~~~~~L~~L~L~~n 284 (590)
.+..+.. +..+++|+.|++++|.+.+..+..+..+++|+.|+++++...+. +|. ..+..+++|++|++++|
T Consensus 261 ~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 261 NVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred CccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 7555544 47888999999999988887777888889999999987654432 221 12234788999999999
Q ss_pred eecccCCcccCCCCCCcEEEccCccccc-ccchhhhcC--CCCCcEEEccCCcCCCccCccccCccccCceeccCccccc
Q 007762 285 ALDGSIPSSFGNMKFLQLLDVTNNQLTG-EIPEHLAVG--CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG 361 (590)
Q Consensus 285 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 361 (590)
.+++..+..+..+++|++|++++|.+.. .++...+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 9888778888899999999999887542 233333222 3589999999999988888888889999999999999876
Q ss_pred cCC-ccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCc--CCCCcccCCCCCCcEEEcccCcCCCCCCCC
Q 007762 362 EIP-QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE--GPIPVEFCQLDWLQILDISDNNISGSLPSC 438 (590)
Q Consensus 362 ~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 438 (590)
.++ ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..|..+++|++|++++|.+++..+..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 555 67888999999999999988888888889999999999999876 456788899999999999999998777765
Q ss_pred CC-CCcccEEECcCccCCCCC-------CccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccc
Q 007762 439 FH-PLSIEHVHLSKNMLHGQL-------KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510 (590)
Q Consensus 439 ~~-~~~L~~L~l~~n~~~~~~-------~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 510 (590)
+. +++|++|++++|.+++.. +...+.++++|+.|++++|.++...+..|.++++|++|++++|++++..+..
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence 54 788999999999885321 1223678899999999999998655567889999999999999999666667
Q ss_pred ccCCCCCCEEECcCCccCCCCccccc-cCCccccccCCCCCCCccceeccccCCCCCCCCCcccc
Q 007762 511 LCKLNQLQLLDLSNNNLHGPIPPCFD-NTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVM 574 (590)
Q Consensus 511 ~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~~~~ 574 (590)
|..+++|+.|++++|++++..|..+. .++... ...+.|||+.|++.+
T Consensus 580 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~-----------------~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT-----------------ELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS-----------------EEECTTCCCCBCCCC
T ss_pred hCCCCCCCEEECCCCcCCccChhHhcccccccC-----------------EEEccCCCcccCCcc
Confidence 78899999999999999987776554 322222 234457777777763
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-51 Score=443.20 Aligned_cols=495 Identities=23% Similarity=0.199 Sum_probs=318.1
Q ss_pred CCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCC
Q 007762 20 SLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTS 99 (590)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 99 (590)
.+++|++++| .+.+..+..+. .+++|++|++++|.+.. +.+.+|.++++|++|++++|.+.+..|.+|.++++
T Consensus 34 ~l~~L~Ls~n--~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSFN--VLPTIQNTTFS-RLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTTC--CCSEECTTTST-TCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cCcEEEccCC--ccCcCChhHhc-cCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 5677777777 44444455555 67777777777776654 44466777777777777777776666667777777
Q ss_pred CcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccc-
Q 007762 100 LRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLS- 178 (590)
Q Consensus 100 L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~- 178 (590)
|++|++++|.++ .++...+.++++|++|++++|.+.+ ++...+..+++|+.|++++|.+........ ....+++
T Consensus 107 L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~ 181 (606)
T 3t6q_A 107 LKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDM---SSLQQATN 181 (606)
T ss_dssp CCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHH---HTTTTCCS
T ss_pred ccEeeccccCcc-cCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhh---hhhcccce
Confidence 777777777766 4433356677777777777776652 222334446777777777776654322110 0112444
Q ss_pred -eEeccCCCCCCCcCChhccCCCcccEEEcCCCcCcc-------------------------ccchHHhhcCC--CCcEE
Q 007762 179 -RLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNG-------------------------EFPTWLLENNT--NLESL 230 (590)
Q Consensus 179 -~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-------------------------~~~~~~~~~l~--~L~~L 230 (590)
.|++ ..+.+.+..+..+.. .+|+.|+++++.... .++...+..+. +|+.|
T Consensus 182 l~L~l-~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 182 LSLNL-NGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp EEEEC-TTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred eEEec-CCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 5666 555555555544433 466777776654110 11111222222 56777
Q ss_pred EccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCccc
Q 007762 231 FLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310 (590)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 310 (590)
++++|.+.+..+..+..+++|+.|++++|.++ .+|..+.. +++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 77777777666666777777777777777776 66665544 66777777777777766666677777777777777776
Q ss_pred ccccchhhhcCCCCCcEEEccCCcCCCcc--CccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCc
Q 007762 311 TGEIPEHLAVGCVNLEYLALSNNSLEGHM--FSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIP 388 (590)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 388 (590)
.+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 66666655556777777777777776544 5566677777777777777766666667777777777777777765544
Q ss_pred c-ccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCC-C--C-CCCCCcccEEECcCccCCCCCCcccc
Q 007762 389 R-WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL-P--S-CFHPLSIEHVHLSKNMLHGQLKRGTF 463 (590)
Q Consensus 389 ~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~--~-~~~~~~L~~L~l~~n~~~~~~~~~~~ 463 (590)
. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.. + . ...+++|+.|++++|.+++..+. .+
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~ 496 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AF 496 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TT
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh-hh
Confidence 3 3667777777777777777666667777777777777777765421 1 1 22356777777777777533333 36
Q ss_pred ccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 464 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
..+++|+.|++++|.+++..|..+..+++| +|++++|++++..|..+..+++|+.|++++|++....+
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 777777777777777777777777777777 77777777776666667777777777777777765443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-51 Score=439.53 Aligned_cols=500 Identities=17% Similarity=0.184 Sum_probs=411.8
Q ss_pred CCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCC
Q 007762 21 LELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSL 100 (590)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 100 (590)
-+.++.++..+ ..+|..+. +++++|++++|.++. +++.+|.++++|++|++++|.+.+..|.+|.++++|
T Consensus 14 ~~~~~c~~~~l---~~iP~~l~---~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 83 (606)
T 3t6q_A 14 NKTYNCENLGL---NEIPGTLP---NSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83 (606)
T ss_dssp TTEEECTTSCC---SSCCTTSC---TTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred CceEECCCCCc---ccCcCCCC---CcCcEEEccCCccCc----CChhHhccCccceEEECCCCccceeChhhccCcccc
Confidence 34677777744 57777665 479999999999976 767899999999999999999998889999999999
Q ss_pred cEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceE
Q 007762 101 RILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRL 180 (590)
Q Consensus 101 ~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L 180 (590)
++|++++|.+++..+. .+.++++|++|++++|.+.+ ++...+.++++|++|++++|.+....... .....+|+.|
T Consensus 84 ~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L 158 (606)
T 3t6q_A 84 DTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPK---GFPTEKLKVL 158 (606)
T ss_dssp CEEECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCT---TCCCTTCCEE
T ss_pred CeeeCCCCcccccChh-hhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCccc---ccCCcccCEE
Confidence 9999999999844444 89999999999999999874 33456889999999999999987643222 1224589999
Q ss_pred eccCCCCCCCcCChhccCCCccc--EEEcCCCcCccccchHHhhcCCCCcEEEccCCCCC--------------------
Q 007762 181 SLSSGYGDGVIFPKFLYHQHDLE--YVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLA-------------------- 238 (590)
Q Consensus 181 ~l~~~~~~~~~~~~~l~~~~~L~--~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------------------- 238 (590)
++ ..+.+.+..+..+..+++|+ .|++++|.+.+..+..+ ...+|+.|++++|...
T Consensus 159 ~L-~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~ 235 (606)
T 3t6q_A 159 DF-QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235 (606)
T ss_dssp EC-CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCC
T ss_pred Ec-ccCcccccChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhHHHHhhhccccchhheechhh
Confidence 99 78888888888899999999 89999999986555543 4568888888876410
Q ss_pred ------CCCcCCCCCCC--cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCccc
Q 007762 239 ------GPFRLPIHSHK--RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQL 310 (590)
Q Consensus 239 ------~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 310 (590)
......+..+. +|+.|++++|.+++ ++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 236 ~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313 (606)
T ss_dssp TTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCC
T ss_pred ccccccccChhHhchhhcCceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCc
Confidence 01111122222 78999999999984 45444444899999999999998 7888899999999999999999
Q ss_pred ccccchhhhcCCCCCcEEEccCCcCCCccC-ccccCccccCceeccCccccccC--CccccCCCCCCEEEccCCcccccC
Q 007762 311 TGEIPEHLAVGCVNLEYLALSNNSLEGHMF-SRNFNLTNLKWLQLEGNHFVGEI--PQSLSKCFVLEGLFLNNNSLSGMI 387 (590)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~ 387 (590)
. .++...+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..
T Consensus 314 ~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 314 E-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp S-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred C-cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC
Confidence 8 4443444569999999999999885554 45888999999999999988665 677899999999999999999888
Q ss_pred ccccCCCCCccEEECCCCcCcCCCCc-ccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCC-C-Ccccc
Q 007762 388 PRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQ-L-KRGTF 463 (590)
Q Consensus 388 ~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~-~-~~~~~ 463 (590)
+..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+. +++|++|++++|.+.+. + ....+
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 88999999999999999999876654 488999999999999999887777654 78999999999998652 2 22348
Q ss_pred ccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccc
Q 007762 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (590)
Q Consensus 464 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~ 542 (590)
..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++| .|++++|++++.+|..+..++.+.
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence 889999999999999998888999999999999999999999999999999999 999999999988888877655444
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-49 Score=434.64 Aligned_cols=550 Identities=22% Similarity=0.193 Sum_probs=368.9
Q ss_pred cccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccc
Q 007762 8 GVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLR 87 (590)
Q Consensus 8 ~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 87 (590)
.+||. .+. +++++|++++| .+.+..+..+. .+++|++|++++|.+++ +.+.+|.++++|++|++++|.++
T Consensus 17 ~~ip~-~~~--~~l~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 17 TQVPD-DLP--TNITVLNLTHN--QLRRLPAANFT-RYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp SSCCS-CSC--TTCSEEECCSS--CCCCCCGGGGG-GGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCC
T ss_pred ccccc-ccC--CCCcEEECCCC--CCCCcCHHHHh-CCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccC
Confidence 45884 344 79999999999 55655555666 99999999999999976 66688999999999999999999
Q ss_pred ccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCC
Q 007762 88 GSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS 167 (590)
Q Consensus 88 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~ 167 (590)
...+.+|.++++|++|++++|.++ .++...+.++++|++|++++|.+.+ .+...+.++++|+.|++++|.+.......
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred ccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHH
Confidence 655568999999999999999998 6665589999999999999999874 34466789999999999999876543321
Q ss_pred CCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcC---------------------------CCcCccccchHH
Q 007762 168 PSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLS---------------------------HMKMNGEFPTWL 220 (590)
Q Consensus 168 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls---------------------------~~~~~~~~~~~~ 220 (590)
.. .....+|+.|++ ..+.+.+..+..+..+.+|+.++++ +|.+.+..+.++
T Consensus 165 ~~-~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 165 LD-IFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HG-GGTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred hh-ccccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 10 112248999999 7778888777777766555555554 444443333332
Q ss_pred hhcCC--CCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecc-----cCCc-
Q 007762 221 LENNT--NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDG-----SIPS- 292 (590)
Q Consensus 221 ~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-----~~~~- 292 (590)
..++ +|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|...+ .+|.
T Consensus 243 -~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 243 -LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp -GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC------CCEE
T ss_pred -hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhccccccccccc
Confidence 3332 2555555555555544445555555555555555555433333332 5555555555443221 1121
Q ss_pred ---ccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCc--cCccccC--ccccCceeccCccccccCCc
Q 007762 293 ---SFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGH--MFSRNFN--LTNLKWLQLEGNHFVGEIPQ 365 (590)
Q Consensus 293 ---~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~~~~--l~~L~~L~l~~~~~~~~~~~ 365 (590)
.+..+++|++|++++|.+. .++...+..+++|++|++++|.+... ....+.. .++|+.|++++|.+.+..+.
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred ChhhcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence 4455556666666666655 33333334456666666666543211 1112221 24566666666777666667
Q ss_pred cccCCCCCCEEEccCCcccccCc-cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC--CCCCCCC-CC
Q 007762 366 SLSKCFVLEGLFLNNNSLSGMIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS--GSLPSCF-HP 441 (590)
Q Consensus 366 ~l~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~-~~ 441 (590)
.+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+. +..|..+ .+
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 77777788888888887765544 56777788888888888777666777777888888888887765 3344433 36
Q ss_pred CcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc--------ccccccCCCCEEECcCCcccCCCcccccC
Q 007762 442 LSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS--------DWVDGLSQLSHLILGHNNLEGEVPVQLCK 513 (590)
Q Consensus 442 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 513 (590)
++|+.|++++|.++ .++...+.++++|+.|++++|.+++..+ ..+.++++|++|++++|+++...+..|..
T Consensus 480 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 480 RNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 78888888888885 5555557888888888888888875322 23677888888888888888444456888
Q ss_pred CCCCCEEECcCCccCCCCccccccCCccccccCCCCCCCccceeccccCCCCCCCCCcccccCCC
Q 007762 514 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEIFFFIQGPQGHPRLATLVMNQHS 578 (590)
Q Consensus 514 l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~~~~~~~~ 578 (590)
+++|+.|++++|++++..|..|.+++.++..+...+.+..+....+.. ..|.+....+...+
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP---AFRNLTELDMRFNP 620 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH---HHTTCSEEECTTCC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcc---cccccCEEEccCCC
Confidence 888888888888888766666777776666666666554443321110 12445555555444
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-49 Score=426.91 Aligned_cols=519 Identities=20% Similarity=0.172 Sum_probs=316.9
Q ss_pred cccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccc
Q 007762 8 GVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLR 87 (590)
Q Consensus 8 ~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 87 (590)
..||.+ +. ++|++|++++| .+.+..+..+. .+++|++|++++|.++. +++.+|.++++|++|++++|.+.
T Consensus 24 ~~ip~~-~~--~~l~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 24 SKVPDD-IP--SSTKNIDLSFN--PLKILKSYSFS-NFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp SSCCTT-SC--TTCCEEECTTS--CCCEECTTTTT-TCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCC
T ss_pred ccCCCC-CC--CCcCEEECCCC--CcCEeChhhcc-CCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCccc
Confidence 367743 33 78999999999 55655565666 89999999999999875 66678999999999999999999
Q ss_pred ccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCC
Q 007762 88 GSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS 167 (590)
Q Consensus 88 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~ 167 (590)
+..|.+|+++++|++|++++|.++ .++...+.++++|++|++++|.+.+......+.++++|+.|++++|.+.......
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred ccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 777999999999999999999998 6664479999999999999999874222357889999999999999887654332
Q ss_pred CCCCCC-CcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCC-----
Q 007762 168 PSLTAP-NFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF----- 241 (590)
Q Consensus 168 ~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----- 241 (590)
...... ...+..+++ ..+.+....+..+... +|+.|++++|.+.+......+.+++.++.+.+....+....
T Consensus 173 ~~~l~~L~~~l~~L~l-~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDM-SLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp THHHHHCTTCCCEEEC-TTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhccccccceeec-cCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 110000 001447888 6777766555555544 89999999998865444444588888888777443322210
Q ss_pred -cCCCCCCC--cccEEEc-cCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchh
Q 007762 242 -RLPIHSHK--RLRLLDI-SNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEH 317 (590)
Q Consensus 242 -~~~~~~~~--~L~~L~l-~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 317 (590)
...+..+. .++.+++ ..+.+.+..|. + ..+++|+.|+++++.+. .+| .+..+++|++|++++|.+. .+|.
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~-~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~- 324 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-F-HCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT- 324 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGS-C-GGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-
T ss_pred ChHHhhhhhhccHhheeccccccccccccc-c-ccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-
Confidence 00111111 2444444 33444444443 2 22555666666655554 333 4555555666666666552 5552
Q ss_pred hhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccccc--CCccccCCCCCCEEEccCCcccccCccccCCCC
Q 007762 318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGE--IPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT 395 (590)
Q Consensus 318 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 395 (590)
+ .+++|++|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+ ++..+..++
T Consensus 325 ~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~ 399 (606)
T 3vq2_A 325 L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399 (606)
T ss_dssp C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCT
T ss_pred C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCC
Confidence 2 3555666666555333221 344555566666665555433 24445555556666666555553 334555555
Q ss_pred CccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEE
Q 007762 396 RLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLD 473 (590)
Q Consensus 396 ~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 473 (590)
+|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. +++|++|++++|.+.+.+.+..+..+++|+.|+
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 66666666655554444 3455555666666666655554444332 455666666666554432222255555666666
Q ss_pred cCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC-ccccccCCCCCC
Q 007762 474 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT-LHESYSNSSSPN 551 (590)
Q Consensus 474 ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~~~~~~~~~~~~ 551 (590)
+++|.+++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..+. .+...+...+|.
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 6666555555555555566666666666655555555555566666666666555 4454454443 233444444443
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-48 Score=434.59 Aligned_cols=506 Identities=21% Similarity=0.162 Sum_probs=404.4
Q ss_pred ccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc
Q 007762 9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG 88 (590)
Q Consensus 9 ~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 88 (590)
.||. -.++|++|++++| .+.+..+..+. .+++|++|+|++|.... .+++.+|.++++|++|+|++|.+.+
T Consensus 18 ~vP~----lp~~l~~LdLs~N--~i~~i~~~~~~-~l~~L~~LdLs~n~~~~---~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 18 QVPQ----VLNTTERLLLSFN--YIRTVTASSFP-FLEQLQLLELGSQYTPL---TIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCCS----SCTTCCEEEEESC--CCCEECSSSCS-SCCSCSEEEECTTCCCC---EECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCC----CCCCcCEEECCCC--cCCccChhHCc-ccccCeEEeCCCCCCcc---ccCHHHhcCCCCCCEEECCCCcCcc
Confidence 5773 4579999999999 66666777777 99999999999996655 6767899999999999999999998
Q ss_pred cCCccccCCCCCcEEEccccccccccCC-CCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCC
Q 007762 89 SLPWCMANMTSLRILYVSSNQLTGSISS-SPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQS 167 (590)
Q Consensus 89 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~ 167 (590)
..|.+|.++++|++|++++|.+++.++. ..+.++++|++|++++|.+.+..+...+.++++|+.|++++|.+.......
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 8899999999999999999999865554 248999999999999999986555567899999999999999886554332
Q ss_pred CCCCCCCcccceEeccCCCCCCCcCChhccCCCc------ccEEEcCCCcCccccchHHhhcC--CCCcEEEccCCC---
Q 007762 168 PSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHD------LEYVDLSHMKMNGEFPTWLLENN--TNLESLFLVNDS--- 236 (590)
Q Consensus 168 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~------L~~L~ls~~~~~~~~~~~~~~~l--~~L~~L~l~~~~--- 236 (590)
... ....+|+.|++ ..+.+.+..+..+..+.+ |+.|++++|.+.+..+..+.... .+++.+.+..+.
T Consensus 168 l~~-l~~~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 168 LEP-LQGKTLSFFSL-AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp GHH-HHHCSSCCCEE-CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred ccc-ccCCccceEEC-CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 111 01147889999 677777777766665554 99999999988877776654333 578888876432
Q ss_pred ------CCCCCcCCCCCC--CcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCc
Q 007762 237 ------LAGPFRLPIHSH--KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308 (590)
Q Consensus 237 ------~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 308 (590)
+.+.....+..+ ++|+.|++++|.+.+..+..+. .+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 222223334333 6899999999998855454444 4889999999999999888888999999999999999
Q ss_pred ccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCc
Q 007762 309 QLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIP 388 (590)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 388 (590)
.+. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+. ..+++|+.+++++|+++ .++
T Consensus 325 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~ 397 (844)
T 3j0a_A 325 LLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLP 397 (844)
T ss_dssp CCS-CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCC
T ss_pred CCC-ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccc
Confidence 998 55444455789999999999999887788888999999999999988732 33788999999999988 334
Q ss_pred cccCCCCCccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCC--CCCCCcccEEECcCccCCCC----CCcc
Q 007762 389 RWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPS--CFHPLSIEHVHLSKNMLHGQ----LKRG 461 (590)
Q Consensus 389 ~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~~~~~----~~~~ 461 (590)
.. ..+++.|++++|.+.+... ..+..+++|+.|++++|.+++..+. ...+++|+.|++++|.+... ....
T Consensus 398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 32 5678999999999886432 3456899999999999999865543 23368999999999998532 2234
Q ss_pred ccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC
Q 007762 462 TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539 (590)
Q Consensus 462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 539 (590)
.|.++++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..+. ++|+.|++++|++++.+|..|..+.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcC
Confidence 478899999999999999998889999999999999999999976666555 8999999999999999998887554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.3e-49 Score=421.57 Aligned_cols=503 Identities=18% Similarity=0.103 Sum_probs=395.4
Q ss_pred CCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCC
Q 007762 21 LELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSL 100 (590)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 100 (590)
-++++.++..+ ..+|..+. +++++|++++|.+++ +++.+|.++++|++|++++|.+++..|.+|.++++|
T Consensus 13 ~~~~~c~~~~l---~~ip~~~~---~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 13 NITYQCMDQKL---SKVPDDIP---SSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82 (606)
T ss_dssp TTEEECTTSCC---SSCCTTSC---TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCceEccCCCc---ccCCCCCC---CCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCcccccCHHHhhchhhc
Confidence 46788888855 56776654 789999999999976 776789999999999999999998888899999999
Q ss_pred cEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceE
Q 007762 101 RILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRL 180 (590)
Q Consensus 101 ~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L 180 (590)
++|++++|.++ .++...+.++++|++|++++|.+.+ .+...+.++++|++|++++|.+...
T Consensus 83 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 143 (606)
T 3vq2_A 83 SNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSC----------------- 143 (606)
T ss_dssp CEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCC-----------------
T ss_pred CEeECCCCccc-ccChhhcCCcccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccce-----------------
Confidence 99999999998 5533489999999999999999873 4445688999999999988875421
Q ss_pred eccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCC----CcEEEccCCCCCCCCcCCCCCCCcccEEEc
Q 007762 181 SLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTN----LESLFLVNDSLAGPFRLPIHSHKRLRLLDI 256 (590)
Q Consensus 181 ~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 256 (590)
.+|..+.++++|++|++++|.+.+..+..+ ..+++ +..|++++|.+.+..+..+... +|+.|++
T Consensus 144 ----------~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L 211 (606)
T 3vq2_A 144 ----------KLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTL 211 (606)
T ss_dssp ----------CCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEE
T ss_pred ----------echHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeec
Confidence 245566677777777777777664433332 33333 3367777777665544444333 6777777
Q ss_pred cCCcCCCCCchhhhhcCCCCcEEEc---------------------------------cCceecccCCcccCCCCCCcEE
Q 007762 257 SNNNFRGHIPVEIGDVLPGLFSLNI---------------------------------SMNALDGSIPSSFGNMKFLQLL 303 (590)
Q Consensus 257 ~~n~l~~~~~~~~~~~~~~L~~L~L---------------------------------~~n~~~~~~~~~l~~l~~L~~L 303 (590)
++|.+.+.........+++++.+++ ..+.+.+..|. +..+++|+.|
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L 290 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAM 290 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEE
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEE
Confidence 7776643222222222455554444 44556656665 8889999999
Q ss_pred EccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcc
Q 007762 304 DVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSL 383 (590)
Q Consensus 304 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 383 (590)
+++++.+. .++ .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+
T Consensus 291 ~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 291 SLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred EecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence 99999997 777 344688999999999999 4566 45 8999999999999655443 567899999999999999
Q ss_pred ccc--CccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCC-CC-CCCCcccEEECcCccCCCCCC
Q 007762 384 SGM--IPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLP-SC-FHPLSIEHVHLSKNMLHGQLK 459 (590)
Q Consensus 384 ~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~~~~L~~L~l~~n~~~~~~~ 459 (590)
++. .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ .. ..+++|++|++++|.+.+..+
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 866 37788999999999999999884 56889999999999999999988776 33 358899999999999976566
Q ss_pred ccccccCCCCcEEEcCCCcCCC-CccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccC
Q 007762 460 RGTFFNYHSLVTLDLSYNRLNG-SISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT 538 (590)
Q Consensus 460 ~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 538 (590)
.. +..+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+..+
T Consensus 442 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 442 GI-FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred hh-hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 55 8999999999999999997 478899999999999999999998889999999999999999999999889999988
Q ss_pred CccccccCCCCCCCcccee-------ccccCCCCCCCCCccccc
Q 007762 539 TLHESYSNSSSPNKQFEIF-------FFIQGPQGHPRLATLVMN 575 (590)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~np~~~~~~~~ 575 (590)
+.+...+...+.+..++.. .....+.|||..|++.+.
T Consensus 521 ~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 8777666666655443321 233467899999988754
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-46 Score=397.44 Aligned_cols=474 Identities=23% Similarity=0.207 Sum_probs=371.7
Q ss_pred ccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc
Q 007762 9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG 88 (590)
Q Consensus 9 ~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 88 (590)
+||. .+. +++++|++++| .+.+..+..+. .+++|++|++++|.++. +++.+|.++++|++|++++|.+++
T Consensus 21 ~ip~-~l~--~~l~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 21 KIPD-NLP--FSTKNLDLSFN--PLRHLGSYSFF-SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp SCCS-SSC--SSCCEEECCSC--CCCEECTTTTT-TCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ccCC-Ccc--ccccEEEccCC--ccCccChhHhh-CCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCcCCc
Confidence 4663 232 47888888888 55555555666 88888888888888765 666778888888888888888887
Q ss_pred cCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCC
Q 007762 89 SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSP 168 (590)
Q Consensus 89 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~ 168 (590)
..+.+|.++++|++|++++|.++ .++...+.++++|++|++++|.+.+......+.++++|+.|++++|.+...
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~----- 164 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----- 164 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-----
T ss_pred cCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-----
Confidence 77788888888888888888887 566556888888888888888876422235677788888888877765332
Q ss_pred CCCCCCcccceEeccCCCCCCCcCChhccCCCcc----cEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCC-----
Q 007762 169 SLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDL----EYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG----- 239 (590)
Q Consensus 169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L----~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----- 239 (590)
.+..+..+++| +.+++++|.+.+..+.. +... +|+.|++++|....
T Consensus 165 -----------------------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 165 -----------------------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEI-RLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp -----------------------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTC-EEEEEEEESCCSCTTHHHH
T ss_pred -----------------------cHHHccchhccchhhhhcccCCCCceecCHHH-hccC-cceeEecccccccccchhh
Confidence 33445555556 78999999887554443 3443 78999888773221
Q ss_pred --------------------------CCcCCCCCCC--cccEEEccCC-cCCCCCchhhhhcCCCCcEEEccCceecccC
Q 007762 240 --------------------------PFRLPIHSHK--RLRLLDISNN-NFRGHIPVEIGDVLPGLFSLNISMNALDGSI 290 (590)
Q Consensus 240 --------------------------~~~~~~~~~~--~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 290 (590)
.....+..++ .++.++++++ .+.+..+..+.. +++|++|++++|.++ .+
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l 297 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RV 297 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SC
T ss_pred hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hh
Confidence 0111122222 3456666666 555566666654 789999999999998 68
Q ss_pred CcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccC--Ccccc
Q 007762 291 PSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI--PQSLS 368 (590)
Q Consensus 291 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~ 368 (590)
|..+..+ +|++|++++|.+. .+|.. .+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+.
T Consensus 298 ~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 298 KDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp CBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred hhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence 8888888 9999999999998 77763 488999999999988765544 67899999999999987543 56788
Q ss_pred CCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccE
Q 007762 369 KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEH 446 (590)
Q Consensus 369 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~ 446 (590)
.+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. +++|++
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 899999999999999865554 8899999999999999987665 5688999999999999999887777664 789999
Q ss_pred EECcCccCC-CCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCC
Q 007762 447 VHLSKNMLH-GQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN 525 (590)
Q Consensus 447 L~l~~n~~~-~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (590)
|++++|.+. +.+|.. +..+++|+.|++++|.+++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|
T Consensus 450 L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 450 LKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EECTTCEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECcCCcCccccchhh-hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 999999986 356655 899999999999999999888999999999999999999999888888999999999999999
Q ss_pred ccCCCCccc
Q 007762 526 NLHGPIPPC 534 (590)
Q Consensus 526 ~l~~~~p~~ 534 (590)
++++..|..
T Consensus 529 ~~~~~~~~~ 537 (570)
T 2z63_A 529 PWDCSCPRI 537 (570)
T ss_dssp CBCCCTTTT
T ss_pred cccCCCcch
Confidence 999887743
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-45 Score=391.86 Aligned_cols=473 Identities=17% Similarity=0.170 Sum_probs=374.7
Q ss_pred cccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccc
Q 007762 8 GVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLR 87 (590)
Q Consensus 8 ~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 87 (590)
.+||+..+ ++|++|++++| .+.+..+..+. .+++|++|++++|.+++ +++.+|..+++|++|++++|.+.
T Consensus 18 ~~ip~~~~---~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 18 TSIPSGLT---AAMKSLDLSFN--KITYIGHGDLR-ACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp SSCCSCCC---TTCCEEECCSS--CCCEECSSTTS-SCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccCC---CCccEEECcCC--ccCccChhhhh-cCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccC
Confidence 36775332 68888888888 55666666666 88888888888888875 66577888888888888888888
Q ss_pred ccCCccccCCCCCcEEEcccccccc-ccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccC
Q 007762 88 GSLPWCMANMTSLRILYVSSNQLTG-SISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQ 166 (590)
Q Consensus 88 ~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~ 166 (590)
+..+.+|+++++|++|++++|.+++ .++. .+.++++|++|++++|.+.+.++...+.++++|+.|++++|.+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 161 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR----- 161 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----
Confidence 6666668888888888888888873 2333 67888888888888887555666667777888888877776543
Q ss_pred CCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCC--c-C
Q 007762 167 SPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPF--R-L 243 (590)
Q Consensus 167 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~-~ 243 (590)
+..|..+..+++|++|+++++.+. .++..++..+++|+.|++++|.+.+.. + .
T Consensus 162 -----------------------~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 217 (549)
T 2z81_A 162 -----------------------NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLP 217 (549)
T ss_dssp -----------------------EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred -----------------------ccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccc
Confidence 335667788899999999999876 677777788999999999999988742 1 2
Q ss_pred CCCCCCcccEEEccCCcCCCCCchhhh---hcCCCCcEEEccCceeccc------CCcccCCCCCCcEEEccCcccccc-
Q 007762 244 PIHSHKRLRLLDISNNNFRGHIPVEIG---DVLPGLFSLNISMNALDGS------IPSSFGNMKFLQLLDVTNNQLTGE- 313 (590)
Q Consensus 244 ~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~L~~n~~~~~------~~~~l~~l~~L~~L~l~~n~~~~~- 313 (590)
....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+. ....+..+++++.+++.++.+...
T Consensus 218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred hhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh
Confidence 234578999999999988765554442 3367999999999988742 123456788999999998876521
Q ss_pred ----cchhhhcCCCCCcEEEccCCcCCCccCccc-cCccccCceeccCccccccCC---ccccCCCCCCEEEccCCcccc
Q 007762 314 ----IPEHLAVGCVNLEYLALSNNSLEGHMFSRN-FNLTNLKWLQLEGNHFVGEIP---QSLSKCFVLEGLFLNNNSLSG 385 (590)
Q Consensus 314 ----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~ 385 (590)
++. .+...++|+.|++++|.+.. +|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++
T Consensus 298 ~~~~l~~-~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 298 LFYDLST-VYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp GSCCCCH-HHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred hcccchh-hhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence 111 12236789999999999875 45444 579999999999999987653 347789999999999999986
Q ss_pred cCc--cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCcccc
Q 007762 386 MIP--RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTF 463 (590)
Q Consensus 386 ~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 463 (590)
..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++. +..+ +++|++|++++|.+++. .
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~-~~~L~~L~Ls~N~l~~~-----~ 447 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI-PQTLEVLDVSNNNLDSF-----S 447 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS-CTTCSEEECCSSCCSCC-----C
T ss_pred cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh-cCCceEEECCCCChhhh-----c
Confidence 532 45888999999999999998 6788889999999999999999844 3332 46899999999999653 2
Q ss_pred ccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 464 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
..+++|+.|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 46789999999999999 5665 4678999999999999998888889999999999999999998777
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=409.18 Aligned_cols=503 Identities=20% Similarity=0.230 Sum_probs=404.1
Q ss_pred CCCCccccccCCCCCCCCCCCCeEeCcCCcCcccccc-chHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEE
Q 007762 1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSF-LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQEL 79 (590)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L 79 (590)
+|+|.+.+..| .+|+++++|++|++++| ...+.+ |..+. .+++|++|+|++|.+.. +.+..|.++++|++|
T Consensus 31 Ls~N~i~~i~~-~~~~~l~~L~~LdLs~n--~~~~~i~~~~f~-~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 31 LSFNYIRTVTA-SSFPFLEQLQLLELGSQ--YTPLTIDKEAFR-NLPNLRILDLGSSKIYF----LHPDAFQGLFHLFEL 102 (844)
T ss_dssp EESCCCCEECS-SSCSSCCSCSEEEECTT--CCCCEECTTTTS-SCTTCCEEECTTCCCCE----ECTTSSCSCSSCCCE
T ss_pred CCCCcCCccCh-hHCcccccCeEEeCCCC--CCccccCHHHhc-CCCCCCEEECCCCcCcc----cCHhHccCCcccCEe
Confidence 35777777666 78999999999999999 555666 55565 99999999999999976 656899999999999
Q ss_pred EeecccccccCCcc--ccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccC--CCccEEEc
Q 007762 80 YIYNNDLRGSLPWC--MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNH--SRLKVFWA 155 (590)
Q Consensus 80 ~L~~n~i~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l--~~L~~l~l 155 (590)
+|++|.+.+..+.. +.++++|++|++++|.+++..+...+.++++|++|++++|.+.+. ....+..+ ++|+.+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCCccceEEC
Confidence 99999999766654 899999999999999998544444689999999999999998743 33556665 89999999
Q ss_pred cCCcccccccCCCCC---CCCCcccceEeccCCCCCCCcCChhccC---CCcccEEEcCCCc---------CccccchHH
Q 007762 156 KNNEINAEITQSPSL---TAPNFQLSRLSLSSGYGDGVIFPKFLYH---QHDLEYVDLSHMK---------MNGEFPTWL 220 (590)
Q Consensus 156 ~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~ls~~~---------~~~~~~~~~ 220 (590)
++|.+.......... ......|+.|++ ..+.+.+..+..+.. ..+++.+.++.+. +.+.... .
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L-s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~-~ 259 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDV-SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN-T 259 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBC-SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT-T
T ss_pred CCCccccccccchhhcCCccccCceeEEec-CCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh-h
Confidence 999987654433211 122336999999 777777776666543 3578888887332 2211111 1
Q ss_pred hhc--CCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCC
Q 007762 221 LEN--NTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMK 298 (590)
Q Consensus 221 ~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~ 298 (590)
+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.. +++|++|++++|.+++..+..+..++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCC
Confidence 233 378999999999999888888999999999999999998655555544 89999999999999988889999999
Q ss_pred CCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEc
Q 007762 299 FLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFL 378 (590)
Q Consensus 299 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 378 (590)
+|++|++++|.+. .++...+..+++|+.|++++|.+.+. ..+++|+.|++++|.+. .+|.. ...++.+++
T Consensus 339 ~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~l 408 (844)
T 3j0a_A 339 KVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHL 408 (844)
T ss_dssp TCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEEC
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeec
Confidence 9999999999997 66666666799999999999998753 23789999999999998 44443 568999999
Q ss_pred cCCcccccCc-cccCCCCCccEEECCCCcCcCCCCc-ccCCCCCCcEEEcccCcCCCCC-----CCCC-CCCcccEEECc
Q 007762 379 NNNSLSGMIP-RWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSL-----PSCF-HPLSIEHVHLS 450 (590)
Q Consensus 379 ~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-----~~~~-~~~~L~~L~l~ 450 (590)
++|.+.+... ..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.... +..+ .+++|+.|+++
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 9999986432 3456899999999999999865443 4667899999999999997433 2333 36899999999
Q ss_pred CccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCC
Q 007762 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGP 530 (590)
Q Consensus 451 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 530 (590)
+|.++ .+++..|.++++|+.|+|++|.+++..+..+. ++|++|++++|++++..|..+ ++|+.|++++|++...
T Consensus 489 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 489 HNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp HHHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred CCccc-ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccc
Confidence 99996 45555589999999999999999987777776 899999999999998888765 5899999999999864
Q ss_pred C
Q 007762 531 I 531 (590)
Q Consensus 531 ~ 531 (590)
-
T Consensus 563 c 563 (844)
T 3j0a_A 563 C 563 (844)
T ss_dssp S
T ss_pred c
Confidence 3
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-45 Score=387.60 Aligned_cols=483 Identities=20% Similarity=0.223 Sum_probs=386.6
Q ss_pred CCCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEE
Q 007762 1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELY 80 (590)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ 80 (590)
+++|++.+..+ .+|+++++|++|++++| .+.+..+..+. .+++|++|++++|.++. +++..|..+++|++|+
T Consensus 35 Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n--~i~~i~~~~~~-~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 35 LSFNPLRHLGS-YSFFSFPELQVLDLSRC--EIQTIEDGAYQ-SLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLV 106 (570)
T ss_dssp CCSCCCCEECT-TTTTTCSSCCEEECTTC--CCCEECTTTTT-TCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEE
T ss_pred ccCCccCccCh-hHhhCCCCceEEECCCC--cCCccCccccc-CchhCCEEeCcCCcCCc----cCHhhhcCcccccccc
Confidence 46777776555 78999999999999999 55555555566 99999999999999875 6768899999999999
Q ss_pred eecccccccCCccccCCCCCcEEEcccccccc-ccCCCCccCCCCCcEEECcCCccccccCccccccCCCc----cEEEc
Q 007762 81 IYNNDLRGSLPWCMANMTSLRILYVSSNQLTG-SISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRL----KVFWA 155 (590)
Q Consensus 81 L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L----~~l~l 155 (590)
+++|.+++..+..++++++|++|++++|.+++ .+|. .+.++++|++|++++|.+. .++...+..+++| +.+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence 99999996555579999999999999999984 3555 7899999999999999987 3445667777777 89999
Q ss_pred cCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCc-----cccchHHhhcCC--CCc
Q 007762 156 KNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMN-----GEFPTWLLENNT--NLE 228 (590)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~-----~~~~~~~~~~l~--~L~ 228 (590)
++|.+....... ....+++.|++.........++..+..+.+++...+....+. ..++...+..+. .++
T Consensus 185 ~~n~l~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 185 SLNPMNFIQPGA----FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp TTCCCCEECTTT----TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred CCCCceecCHHH----hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 999887655433 233378899884443333445666777777776655432111 122332233443 356
Q ss_pred EEEccCC-CCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccC
Q 007762 229 SLFLVND-SLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTN 307 (590)
Q Consensus 229 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 307 (590)
.+.+.++ .+.+..+..+..+++|+.|++++|.+. .+|..+.. + +|++|++++|.+. .+|. ..+++|++|++++
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~ 334 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEES
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc--ccccccCEEeCcC
Confidence 6777766 566667777888999999999999987 67877765 5 9999999999988 5665 4788999999999
Q ss_pred cccccccchhhhcCCCCCcEEEccCCcCCCcc--CccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc
Q 007762 308 NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHM--FSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 385 (590)
Q Consensus 308 n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 385 (590)
|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+
T Consensus 335 n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 335 NKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp CBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred Ccccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 988755554 35899999999999987643 56677899999999999998855444 8899999999999999987
Q ss_pred cCc-cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC-CCCCCCC-CCCcccEEECcCccCCCCCCccc
Q 007762 386 MIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS-GSLPSCF-HPLSIEHVHLSKNMLHGQLKRGT 462 (590)
Q Consensus 386 ~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~ 462 (590)
..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+ .+++|++|++++|.+++..+..
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~- 489 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA- 489 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh-
Confidence 665 56889999999999999999888889999999999999999987 4555544 4789999999999996554554
Q ss_pred cccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCc
Q 007762 463 FFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP 508 (590)
Q Consensus 463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 508 (590)
+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 8899999999999999998888889999999999999999997665
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=374.18 Aligned_cols=453 Identities=17% Similarity=0.165 Sum_probs=280.0
Q ss_pred CCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEe
Q 007762 2 SSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYI 81 (590)
Q Consensus 2 ~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L 81 (590)
++|+++ +||.. +. ++|++|++++| .+.+..+..+. .+++|++|++++|.+++ +.+.+|..+++|++|++
T Consensus 8 s~n~l~-~ip~~-~~--~~L~~L~Ls~n--~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 8 SKNGLI-HVPKD-LS--QKTTILNISQN--YISELWTSDIL-SLSKLRILIISHNRIQY----LDISVFKFNQELEYLDL 76 (520)
T ss_dssp TTSCCS-SCCCS-CC--TTCSEEECCSS--CCCCCCHHHHT-TCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEEC
T ss_pred CCCCcc-ccccc-cc--ccccEEECCCC--cccccChhhcc-ccccccEEecCCCccCC----cChHHhhcccCCCEEec
Confidence 456665 46643 32 66777777777 44444445555 66777777777776654 44456667777777777
Q ss_pred ecccccccCCccccCCCCCcEEEcccccccc-ccCCCCccCCCCCcEEECcCCccccccCccccccCCCc--cEEEccCC
Q 007762 82 YNNDLRGSLPWCMANMTSLRILYVSSNQLTG-SISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRL--KVFWAKNN 158 (590)
Q Consensus 82 ~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L--~~l~l~~~ 158 (590)
++|.++ .+|.. .+++|++|++++|.+++ .+|. .+.++++|++|++++|.+.+ ..+..+++| +.+++++|
T Consensus 77 s~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 77 SHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEEC
T ss_pred CCCcee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeecc
Confidence 777666 34444 56677777777776663 2333 56667777777777766653 234455555 66666665
Q ss_pred cccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCC-cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCC-
Q 007762 159 EINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQH-DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDS- 236 (590)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~- 236 (590)
.+.. .+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|.
T Consensus 149 ~l~~--------------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 149 ETYG--------------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp TTTT--------------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred cccc--------------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 5411 222333333333 233456677766666665555667777777777765
Q ss_pred ------CCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhh--cCCCCcEEEccCceecccCCccc-----CCCCCCcEE
Q 007762 237 ------LAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD--VLPGLFSLNISMNALDGSIPSSF-----GNMKFLQLL 303 (590)
Q Consensus 237 ------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L 303 (590)
+.+..+ .+..+++|+.|+++++.+.+..+..+.. ..++|++|++++|.+++.+|..+ ..++.|+.+
T Consensus 203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 333333 4566777888888777765433322211 14578888888888877777777 777778888
Q ss_pred EccCcccccccch-hhhcC--CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccC
Q 007762 304 DVTNNQLTGEIPE-HLAVG--CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 380 (590)
Q Consensus 304 ~l~~n~~~~~~~~-~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 380 (590)
++++|.+ .+|. .+... ..+|+.|++++|.+.... .+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 282 ~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 357 (520)
T 2z7x_B 282 QVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357 (520)
T ss_dssp EEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred cccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence 8877776 4552 22210 145777777777654322 113456666666666666555555555666666666666
Q ss_pred Ccccc--cCccccCCCCCccEEECCCCcCcCCCCc-ccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCC
Q 007762 381 NSLSG--MIPRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQ 457 (590)
Q Consensus 381 n~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 457 (590)
|.+++ .++..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.++ +.
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~-----------------------~~ 414 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-----------------------DT 414 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC-----------------------GG
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC-----------------------cc
Confidence 66554 2334455555555555555555543333 2444455555555555443 44
Q ss_pred CCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccc-ccCCCCCCEEECcCCccCCCCc
Q 007762 458 LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 458 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p 532 (590)
++.. +. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus 415 ~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 415 IFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 4333 21 68999999999998 67777778999999999999998 55654 8889999999999999987654
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.4e-43 Score=371.11 Aligned_cols=483 Identities=20% Similarity=0.189 Sum_probs=361.8
Q ss_pred CCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCC
Q 007762 18 FKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANM 97 (590)
Q Consensus 18 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l 97 (590)
|+...+.+.+++++ ..+|..++ ++|++|++++|.+++ +++.+|..+++|++|++++|.+++..|.+|..+
T Consensus 4 C~~~~~c~~~~~~l---~~ip~~~~---~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 73 (549)
T 2z81_A 4 CDASGVCDGRSRSF---TSIPSGLT---AAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73 (549)
T ss_dssp ECTTSEEECTTSCC---SSCCSCCC---TTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCceEECCCCcc---ccccccCC---CCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhcccc
Confidence 44445567777744 46666543 678899999988865 555778888889999999988887777888888
Q ss_pred CCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCccc
Q 007762 98 TSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQL 177 (590)
Q Consensus 98 ~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L 177 (590)
++|++|++++|.++ .++...+.++++|++|++++|.+.+......+.++++|+.|++++|.+..
T Consensus 74 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~--------------- 137 (549)
T 2z81_A 74 GSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS--------------- 137 (549)
T ss_dssp TTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------
T ss_pred ccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc---------------
Confidence 89999999988887 44443578888899999988887642223467778888888877765221
Q ss_pred ceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEcc
Q 007762 178 SRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDIS 257 (590)
Q Consensus 178 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 257 (590)
...+..+..+++|++|++++|.+.+..|..+ ..+++|+.|+++.|.+.......+..+++|+.|+++
T Consensus 138 ------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 138 ------------EIRRIDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp ------------EECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred ------------ccCHhhhhcccccCeeeccCCcccccChhhh-hccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 1123456778899999999999887777765 788899999998887765333333467889999999
Q ss_pred CCcCCCCC--chhhhhcCCCCcEEEccCceeccc----CCcccCCCCCCcEEEccCccccccc--c---hhhhcCCCCCc
Q 007762 258 NNNFRGHI--PVEIGDVLPGLFSLNISMNALDGS----IPSSFGNMKFLQLLDVTNNQLTGEI--P---EHLAVGCVNLE 326 (590)
Q Consensus 258 ~n~l~~~~--~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~--~---~~~~~~~~~L~ 326 (590)
+|.+++.. +..+...+++|+.|++++|.+++. ++..+..++.|+.+++++|.+.+.. + ......+++++
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 99887431 223334467899999999888753 3334566788999999988876321 1 11123467889
Q ss_pred EEEccCCcCCCcc-----CccccCccccCceeccCccccccCCccc-cCCCCCCEEEccCCcccccCc---cccCCCCCc
Q 007762 327 YLALSNNSLEGHM-----FSRNFNLTNLKWLQLEGNHFVGEIPQSL-SKCFVLEGLFLNNNSLSGMIP---RWLGNLTRL 397 (590)
Q Consensus 327 ~L~l~~n~i~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L 397 (590)
.+.+.++.+.... +..+...++|+.|++++|.+. .+|..+ .++++|++|++++|.+.+..+ ..+..+++|
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence 9998888765421 111233578999999999987 566554 679999999999999987653 347889999
Q ss_pred cEEECCCCcCcCCCC--cccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcC
Q 007762 398 QHIMMPKNHLEGPIP--VEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLS 475 (590)
Q Consensus 398 ~~L~L~~n~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls 475 (590)
+.|++++|.+.+..+ ..+..+++|++|++++|.++........+++|++|++++|.+. .++.. + .++|+.|+++
T Consensus 364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~-~--~~~L~~L~Ls 439 (549)
T 2z81_A 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTC-I--PQTLEVLDVS 439 (549)
T ss_dssp CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTT-S--CTTCSEEECC
T ss_pred cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccch-h--cCCceEEECC
Confidence 999999999985432 4588999999999999999955544556789999999999984 55544 2 2689999999
Q ss_pred CCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccCCCCC
Q 007762 476 YNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSP 550 (590)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~ 550 (590)
+|++++.+ ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|..+..++.+...+...++
T Consensus 440 ~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 440 NNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 99999643 57899999999999998 6776 5689999999999999999888888887665544444443
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-44 Score=388.04 Aligned_cols=359 Identities=17% Similarity=0.183 Sum_probs=311.2
Q ss_pred CCCCCCcCChhccCCCcccEEEcCCCcCccc-----------------cchHHhh--cCCCCcEEEccCCCCCCCCcCCC
Q 007762 185 GYGDGVIFPKFLYHQHDLEYVDLSHMKMNGE-----------------FPTWLLE--NNTNLESLFLVNDSLAGPFRLPI 245 (590)
Q Consensus 185 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~ 245 (590)
.+.+++ +|..++++++|++|++++|.+.+. +|..+ . ++++|+.|++++|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHH
Confidence 445666 899999999999999999999875 88775 5 89999999999999999999999
Q ss_pred CCCCcccEEEccCCc-CCC-CCchhhhhc-----CCCCcEEEccCceecccCCc--ccCCCCCCcEEEccCcccccccch
Q 007762 246 HSHKRLRLLDISNNN-FRG-HIPVEIGDV-----LPGLFSLNISMNALDGSIPS--SFGNMKFLQLLDVTNNQLTGEIPE 316 (590)
Q Consensus 246 ~~~~~L~~L~l~~n~-l~~-~~~~~~~~~-----~~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~ 316 (590)
..+++|+.|++++|. +++ .+|..+... +++|++|++++|.++ .+|. .++.+++|++|++++|.+.+.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 999999999999998 887 788887652 389999999999999 8888 89999999999999999998999
Q ss_pred hhhcCCCCCcEEEccCCcCCCccCccccCccc-cCceeccCccccccCCccccCCC--CCCEEEccCCcccccCccccC-
Q 007762 317 HLAVGCVNLEYLALSNNSLEGHMFSRNFNLTN-LKWLQLEGNHFVGEIPQSLSKCF--VLEGLFLNNNSLSGMIPRWLG- 392 (590)
Q Consensus 317 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~- 392 (590)
. +..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+.... +|+.|++++|.+.+..|..+.
T Consensus 348 ~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 348 A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 3 446899999999999998 67778999999 999999999998 7787776655 899999999999998888888
Q ss_pred ------CCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCC--------cccEEECcCccCCCCC
Q 007762 393 ------NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPL--------SIEHVHLSKNMLHGQL 458 (590)
Q Consensus 393 ------~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------~L~~L~l~~n~~~~~~ 458 (590)
.+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+... +|+.|++++|.++ .+
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-cc
Confidence 88899999999999995544557779999999999999995555555433 8999999999996 78
Q ss_pred Ccccc-ccCCCCcEEEcCCCcCCCCccccccccCCCCEEEC------cCCcccCCCcccccCCCCCCEEECcCCccCCCC
Q 007762 459 KRGTF-FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLIL------GHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI 531 (590)
Q Consensus 459 ~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 531 (590)
|...+ ..+++|+.|++++|.+++ +|..+..+++|++|++ ++|++.+.+|..+..+++|+.|++++|++ +.+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 87633 389999999999999997 8899999999999999 56788889999999999999999999999 578
Q ss_pred ccccccCCccccccCCCCCCCccc
Q 007762 532 PPCFDNTTLHESYSNSSSPNKQFE 555 (590)
Q Consensus 532 p~~~~~l~~~~~~~~~~~~~~~~~ 555 (590)
|..+. +.+...+...+++.++.
T Consensus 582 p~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 582 NEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CSCCC--TTCCEEECCSCTTCEEE
T ss_pred CHhHh--CcCCEEECcCCCCcccc
Confidence 88765 45556666666655544
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-44 Score=387.36 Aligned_cols=445 Identities=17% Similarity=0.206 Sum_probs=261.0
Q ss_pred CCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCC-------CCC--CCCcccccCCCCCcEEEeeccccccc
Q 007762 19 KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGT-------NSS--KILDRGLCSLVHLQELYIYNNDLRGS 89 (590)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-------~~~--~~~~~~l~~l~~L~~L~L~~n~i~~~ 89 (590)
.+++.|+|+++ .+.+.+|..+. .+++|++|+|++|.+.. .+. .++... +..|+ ++++++.+.+.
T Consensus 81 ~~V~~L~L~~~--~l~g~lp~~l~-~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~ 153 (636)
T 4eco_A 81 GRVTGLSLEGF--GASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYD 153 (636)
T ss_dssp CCEEEEECTTS--CCEEEECGGGG-GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCC
T ss_pred CCEEEEEecCc--ccCCcCChHHh-cCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccC
Confidence 57888888888 66788888877 88888888888885410 000 122111 33455 56665555544
Q ss_pred CCccccC-------------------CCCCcEEEc--cccccccccCCCCccCCCCCcEEECcCCccccc----------
Q 007762 90 LPWCMAN-------------------MTSLRILYV--SSNQLTGSISSSPLVHLTSIEELHLSNNHFQIP---------- 138 (590)
Q Consensus 90 ~~~~~~~-------------------l~~L~~L~l--s~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~---------- 138 (590)
.+..+.. ...++.+.+ ..|.+++ +|. .+.++++|++|++++|.+.+.
T Consensus 154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 231 (636)
T 4eco_A 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENEN 231 (636)
T ss_dssp GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccc
Confidence 4433331 112222222 2456665 666 677778888888888777652
Q ss_pred -------cCccccc--cCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCC
Q 007762 139 -------ISLEPLF--NHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSH 209 (590)
Q Consensus 139 -------~~~~~l~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~ 209 (590)
++ ..+. ++++|+.|++++|.+ .+.+|..+.++++|++|++++
T Consensus 232 ~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l----------------------------~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 232 SEYAQQYKT-EDLKWDNLKDLTDVEVYNCPN----------------------------LTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp SHHHHHHTT-SCCCGGGCTTCCEEEEECCTT----------------------------CSSCCTTTTTCSSCCEEECTT
T ss_pred cchhcccCc-hhhhhcccCCCCEEEecCCcC----------------------------CccChHHHhcCCCCCEEECcC
Confidence 22 2333 555555555544432 233556666777777777777
Q ss_pred Cc-Ccc-ccchHHhhcC------CCCcEEEccCCCCCCCCcC--CCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEE
Q 007762 210 MK-MNG-EFPTWLLENN------TNLESLFLVNDSLAGPFRL--PIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSL 279 (590)
Q Consensus 210 ~~-~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 279 (590)
|. +.+ .+|..+ ..+ ++|+.|++++|.+. .++. .+..+++|+.|++++|.++|.+| .+.. +++|++|
T Consensus 283 n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~-l~~L~~L 358 (636)
T 4eco_A 283 NRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASL 358 (636)
T ss_dssp CTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE-EEEESEE
T ss_pred CCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC-CCCCCEE
Confidence 76 666 666665 333 66777777666666 4544 56666666666666666665666 3332 5566666
Q ss_pred EccCceecccCCcccCCCCC-CcEEEccCcccccccchhhhc-CCCCCcEEEccCCcCCCccCcccc-------CccccC
Q 007762 280 NISMNALDGSIPSSFGNMKF-LQLLDVTNNQLTGEIPEHLAV-GCVNLEYLALSNNSLEGHMFSRNF-------NLTNLK 350 (590)
Q Consensus 280 ~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~-------~l~~L~ 350 (590)
++++|.++ .+|..+..+++ |++|++++|.+. .+|..+.. .+++|+.|++++|.+.+..|..+. .+++|+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 66666666 56666666666 666666666665 55543321 122566666666666555554444 444555
Q ss_pred ceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCc
Q 007762 351 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN 430 (590)
Q Consensus 351 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 430 (590)
+|++++|.+....+..+..+++|+.|++++|.++...+..+.... ..+.++++|++|++++|.
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-----------------EECTTGGGCCEEECCSSC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-----------------ccccccCCccEEECcCCc
Confidence 555555555422222333445555555555554421111111111 000111255555555555
Q ss_pred CCCCCCCCC--CCCcccEEECcCccCCCCCCccccccCCCCcEEEc------CCCcCCCCccccccccCCCCEEECcCCc
Q 007762 431 ISGSLPSCF--HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL------SYNRLNGSISDWVDGLSQLSHLILGHNN 502 (590)
Q Consensus 431 l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l------s~n~l~~~~~~~~~~l~~L~~L~L~~n~ 502 (590)
++......+ .+++|+.|++++|.+++ +|.. +..+++|+.|++ ++|.+.+.+|.++..+++|++|++++|+
T Consensus 500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 500 LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred CCccChhhhhccCCCcCEEECCCCCCCC-cChh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 552222222 34555555555555544 5554 667778888888 5678888999999999999999999999
Q ss_pred ccCCCcccccCCCCCCEEECcCCccCC
Q 007762 503 LEGEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 503 l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
+ +.+|..+. ++|+.|++++|++..
T Consensus 578 l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 578 I-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp C-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred C-CccCHhHh--CcCCEEECcCCCCcc
Confidence 9 47887765 899999999998874
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-41 Score=368.15 Aligned_cols=527 Identities=21% Similarity=0.173 Sum_probs=375.7
Q ss_pred ccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc
Q 007762 9 VLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG 88 (590)
Q Consensus 9 ~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 88 (590)
+||. .+. +.+++|+|++| .+.+..+..+. ++++|++|+|++|.++. +++.+|.++++|++|+|++|++++
T Consensus 45 ~vP~-~lp--~~~~~LdLs~N--~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 45 KIPD-NLP--FSTKNLDLSFN--PLRHLGSYSFF-SFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp SCCS-SSC--TTCCEEECTTS--CCCEECTTTTT-TCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ccCC-CCC--cCCCEEEeeCC--CCCCCCHHHHh-CCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCCC
Confidence 5663 232 47899999999 44544455666 99999999999999975 777889999999999999999997
Q ss_pred cCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCC
Q 007762 89 SLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSP 168 (590)
Q Consensus 89 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~ 168 (590)
..+.+|.++++|++|++++|.++ .++...+.++++|++|++++|.+........+..+++|+.|++++|.+........
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 66678999999999999999998 67766799999999999999998744344667889999999999998876543221
Q ss_pred CCC-CCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCC------CCCCC
Q 007762 169 SLT-APNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDS------LAGPF 241 (590)
Q Consensus 169 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~------~~~~~ 241 (590)
... ........+++ ..+.+....+. ......++.+++.++.....++...+..+..++...+..+. +....
T Consensus 194 ~~L~~l~~~~~~~~l-s~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDL-SLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp HHHHTCTTCCCEEEC-TTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cchhhhhhhhhhhhc-ccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 100 00112234455 44444443333 33445677888888766555556666788888876664332 22222
Q ss_pred cCCCCCCCcccEEEccCCcCCC---CCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhh
Q 007762 242 RLPIHSHKRLRLLDISNNNFRG---HIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHL 318 (590)
Q Consensus 242 ~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 318 (590)
...+.....++...+..+.... ..... +....+++.+.+..+.+.... .+.....++.|++.+|.+. .++..
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~- 346 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTL- 346 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEES-SCCCC-
T ss_pred ccccccccchhhhhhhhhhhcccccchhhh-hhhhccccccccccccccccc--ccccchhhhhhhccccccc-CcCcc-
Confidence 3334455556665555443221 11112 223568888888888776322 3456678888998888876 44332
Q ss_pred hcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccc--cCCccccCCCCCCEEEccCCcccccCccccCCCCC
Q 007762 319 AVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTR 396 (590)
Q Consensus 319 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 396 (590)
.+..|+.+.+..|..... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.... .+..+..+++
T Consensus 347 --~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~ 421 (635)
T 4g8a_A 347 --KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQ 421 (635)
T ss_dssp --BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTT
T ss_pred --cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccccc
Confidence 367788888888876543 234467888888888887653 344555677888889888887764 3456778888
Q ss_pred ccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762 397 LQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474 (590)
Q Consensus 397 L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 474 (590)
|+.+++..+......+ ..|..+++++.++++.|.+.+..+..+. .+.++.|++++|.....+.+..+..+++|+.|+|
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 9999988887665443 4577888899999999888877666554 6788899998887655555555888889999999
Q ss_pred CCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccC-CccccccCCCCCCCc
Q 007762 475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT-TLHESYSNSSSPNKQ 553 (590)
Q Consensus 475 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~~~~~~~~~~~~~~ 553 (590)
++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+ +.+.
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~----------- 570 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA----------- 570 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC-----------
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC-----------
Confidence 9999988888888889999999999999987777888888999999999999988888877764 2222
Q ss_pred cceeccccCCCCCCCCCccccc
Q 007762 554 FEIFFFIQGPQGHPRLATLVMN 575 (590)
Q Consensus 554 ~~~~~~~~~~~~np~~~~~~~~ 575 (590)
.....|||..|+|.+.
T Consensus 571 ------~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 571 ------FLNLTQNDFACTCEHQ 586 (635)
T ss_dssp ------EEECTTCCBCCSGGGH
T ss_pred ------EEEeeCCCCcccCCcH
Confidence 2234577777776643
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-43 Score=370.56 Aligned_cols=450 Identities=20% Similarity=0.197 Sum_probs=297.5
Q ss_pred CeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCc
Q 007762 22 ELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLR 101 (590)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 101 (590)
++|+++++++ . .+|..++ ++|++|++++|.+.+ +++.+|..+++|++|++++|.+++..|.+|.++++|+
T Consensus 3 ~~l~ls~n~l--~-~ip~~~~---~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGL--I-HVPKDLS---QKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCC--S-SCCCSCC---TTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCCc--c-ccccccc---ccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 5788999844 3 5776554 789999999998875 6667888999999999999999877788899999999
Q ss_pred EEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEe
Q 007762 102 ILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLS 181 (590)
Q Consensus 102 ~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 181 (590)
+|++++|.++ .+|.. .+++|++|++++|.+.+......+.++++|+.|++++|.+...
T Consensus 73 ~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~------------------ 130 (520)
T 2z7x_B 73 YLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------------------ 130 (520)
T ss_dssp EEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG------------------
T ss_pred EEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh------------------
Confidence 9999999988 77773 7888999999888876321124455555555555555543210
Q ss_pred ccCCCCCCCcCChhccCCCcc--cEEEcCCCcC--ccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCC-cccEEEc
Q 007762 182 LSSGYGDGVIFPKFLYHQHDL--EYVDLSHMKM--NGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHK-RLRLLDI 256 (590)
Q Consensus 182 l~~~~~~~~~~~~~l~~~~~L--~~L~ls~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l 256 (590)
.+..+++| ++|++++|.+ .+..| ..+..+. ....+++
T Consensus 131 -------------~~~~l~~L~L~~L~l~~n~l~~~~~~~-------------------------~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 131 -------------SVLPIAHLNISKVLLVLGETYGEKEDP-------------------------EGLQDFNTESLHIVF 172 (520)
T ss_dssp -------------GGGGGTTSCEEEEEEEECTTTTSSCCT-------------------------TTTTTCCEEEEEEEC
T ss_pred -------------hccccccceeeEEEeeccccccccccc-------------------------ccccccccceEEEEe
Confidence 11222333 5555555544 33333 3332222 1223344
Q ss_pred cCCcCCCCCchhhhhcCCCCcEEEccCce-------ecccCCcccCCCCCCcEEEccCcccccccchhhhc--CCCCCcE
Q 007762 257 SNNNFRGHIPVEIGDVLPGLFSLNISMNA-------LDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAV--GCVNLEY 327 (590)
Q Consensus 257 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-------~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~ 327 (590)
++|.+.+.++......+++|+.+++++|. +.+.++ .++.+++|++|++++|.+.+..+..+.. ..++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 44444444443333334555555555544 333333 4556666666666666555332221110 1346777
Q ss_pred EEccCCcCCCccCccc-----cCccccCceeccCccccccCC-ccccCC---CCCCEEEccCCcccccCccccCCCCCcc
Q 007762 328 LALSNNSLEGHMFSRN-----FNLTNLKWLQLEGNHFVGEIP-QSLSKC---FVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398 (590)
Q Consensus 328 L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~-~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 398 (590)
|++++|.+.+..|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 7777777666566655 6677777777777766 333 333332 56777777777765332 125677777
Q ss_pred EEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCC--CCCC-CCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcC
Q 007762 399 HIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG--SLPS-CFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLS 475 (590)
Q Consensus 399 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls 475 (590)
+|++++|.+.+..|..+..+++|++|++++|.+++ ..|. ...+++|++|++++|.+.+.++...+..+++|+.|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 77777777777677777777777888887777764 2222 22367788888888887665777768889999999999
Q ss_pred CCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccc-cccCCccccccCCCCC
Q 007762 476 YNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPC-FDNTTLHESYSNSSSP 550 (590)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~ 550 (590)
+|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..++.+...+...++
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 9999988777665 79999999999999 78888889999999999999999 46655 7666555444433333
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.7e-42 Score=373.78 Aligned_cols=312 Identities=21% Similarity=0.295 Sum_probs=178.1
Q ss_pred CChhccCCCcccEEEcCCCc-Ccc-ccchHHh------hcCCCCcEEEccCCCCCCCCcC--CCCCCCcccEEEccCCcC
Q 007762 192 FPKFLYHQHDLEYVDLSHMK-MNG-EFPTWLL------ENNTNLESLFLVNDSLAGPFRL--PIHSHKRLRLLDISNNNF 261 (590)
Q Consensus 192 ~~~~l~~~~~L~~L~ls~~~-~~~-~~~~~~~------~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~l 261 (590)
+|..+.++++|+.|++++|. +.+ .+|..+. ..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+
T Consensus 507 iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC
T ss_pred ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc
Confidence 44455555555556665555 554 4554331 12235666666666555 3444 455556666666666655
Q ss_pred CCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCC-CcEEEccCcccccccchhhhcCC--CCCcEEEccCCcCCCc
Q 007762 262 RGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKF-LQLLDVTNNQLTGEIPEHLAVGC--VNLEYLALSNNSLEGH 338 (590)
Q Consensus 262 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~i~~~ 338 (590)
+ .+| .+.. +++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+. .. ++|+.|++++|.+.+.
T Consensus 586 ~-~lp-~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 586 R-HLE-AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp C-BCC-CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTT
T ss_pred c-cch-hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCc
Confidence 5 555 3322 556666666666655 55555566665 666666666655 5553322 12 2366666666666554
Q ss_pred cCccc---c--CccccCceeccCccccccCCc-cccCCCCCCEEEccCCcccccCccc-cC-------CCCCccEEECCC
Q 007762 339 MFSRN---F--NLTNLKWLQLEGNHFVGEIPQ-SLSKCFVLEGLFLNNNSLSGMIPRW-LG-------NLTRLQHIMMPK 404 (590)
Q Consensus 339 ~~~~~---~--~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~-~~-------~l~~L~~L~L~~ 404 (590)
++... . .+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+. .+|.. +. ++++|+.|+|++
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence 33211 1 2346777777777776 3443 3346677777777777776 33332 22 233788888888
Q ss_pred CcCcCCCCcccC--CCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q 007762 405 NHLEGPIPVEFC--QLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS 482 (590)
Q Consensus 405 n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 482 (590)
|.+. .+|..+. .+++|+.|++++|.+++.+.....+++|+.|++++|+ ++++|.+.+.
T Consensus 738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~-------------------~ls~N~l~~~ 797 (876)
T 4ecn_A 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR-------------------DAEGNRILRQ 797 (876)
T ss_dssp SCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB-------------------CTTCCBCCCC
T ss_pred CCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC-------------------Cccccccccc
Confidence 8777 5666665 7777888888777776532223334444444444432 2234666666
Q ss_pred ccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCcccc
Q 007762 483 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCF 535 (590)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 535 (590)
+|.++..+++|++|+|++|++ +.+|..+. ++|+.|++++|++...-+..+
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 676777777777777777777 46666544 567777777777665444443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.8e-41 Score=355.73 Aligned_cols=465 Identities=20% Similarity=0.156 Sum_probs=281.4
Q ss_pred CCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCcccc
Q 007762 16 PHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMA 95 (590)
Q Consensus 16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 95 (590)
..|...++++++++.+ . .+|..++ ++|++|++++|.++. +++.+|..+++|++|++++|.+++..|.+|.
T Consensus 28 ~~~~~~~~l~ls~~~L--~-~ip~~~~---~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 28 FSNELESMVDYSNRNL--T-HVPKDLP---PRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp -----CCEEECTTSCC--C-SCCTTSC---TTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred cccCCCcEEEcCCCCC--c-cCCCCCC---CCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 4455668999999954 4 5776554 789999999999976 7778999999999999999999988889999
Q ss_pred CCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCc
Q 007762 96 NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNF 175 (590)
Q Consensus 96 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 175 (590)
++++|++|++++|.++ .+|.. .+++|++|++++|.+.+......+.++++|+.|++++|.+..... ......
T Consensus 98 ~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L 169 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHL 169 (562)
T ss_dssp TCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTS
T ss_pred CCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhc
Confidence 9999999999999998 88873 799999999999998742223678899999999999988754211 011111
Q ss_pred ccceEeccCCCCC--CCcCChhccCCC-cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCC----CCcCCCCCC
Q 007762 176 QLSRLSLSSGYGD--GVIFPKFLYHQH-DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG----PFRLPIHSH 248 (590)
Q Consensus 176 ~L~~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~ 248 (590)
+|+.|++ ..+.+ .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|...- .....+..+
T Consensus 170 ~L~~L~L-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 170 HLSCILL-DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp CEEEEEE-EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred eeeEEEe-ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence 3366666 44444 444455544433 111345555555544444444455556666665553100 001123344
Q ss_pred CcccEEEccCCcCCCCCchhhh--hcCCCCcEEEccCceecccCCccc-----CCCCCCcEEEccCcccccccchhhhcC
Q 007762 249 KRLRLLDISNNNFRGHIPVEIG--DVLPGLFSLNISMNALDGSIPSSF-----GNMKFLQLLDVTNNQLTGEIPEHLAVG 321 (590)
Q Consensus 249 ~~L~~L~l~~n~l~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~~ 321 (590)
++|+.+++.++.+.+.....+. ...++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+|......
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~ 326 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS 326 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh
Confidence 5555555555444321111110 012355666666655555555544 3334444444443333 223111100
Q ss_pred ---CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCcc
Q 007762 322 ---CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQ 398 (590)
Q Consensus 322 ---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 398 (590)
..+|+.|++++|.+.. .. ....+++|++|++++|.+++..+..+..+++|+
T Consensus 327 ~~~~~~L~~L~l~~n~~~~------------------------~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 380 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIH------------------------MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380 (562)
T ss_dssp HHHTCCCSEEEEESSCCCC------------------------CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC
T ss_pred hhccCcceEEEccCCCccc------------------------cc--CccCCCCceEEECCCCccccchhhhhcccCCCC
Confidence 1334455555444432 11 113445555555555555554555555555555
Q ss_pred EEECCCCcCcCCC--CcccCCCCCCcEEEcccCcCCCCCCC-CC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762 399 HIMMPKNHLEGPI--PVEFCQLDWLQILDISDNNISGSLPS-CF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474 (590)
Q Consensus 399 ~L~L~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 474 (590)
.|++++|.+.+.. |..+..+++|++|++++|.+++.++. .+ .+++|++|++++|.+++.++.. +. ++|+.|++
T Consensus 381 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L 457 (562)
T 3a79_B 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDL 457 (562)
T ss_dssp EEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEEC
T ss_pred EEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEEC
Confidence 5555555555321 23455555566666666655542222 12 2455666666666654444433 22 68999999
Q ss_pred CCCcCCCCccccccccCCCCEEECcCCcccCCCccc-ccCCCCCCEEECcCCccCCCCc
Q 007762 475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 475 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p 532 (590)
++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999998 66766668999999999999998 56655 8899999999999999987655
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-40 Score=361.31 Aligned_cols=356 Identities=18% Similarity=0.197 Sum_probs=303.7
Q ss_pred CCCCCcCChhccCCCcccEEEcCCCcCcc-----------------ccchHH-hhcCCCCcEEEccCCCCCCCCcCCCCC
Q 007762 186 YGDGVIFPKFLYHQHDLEYVDLSHMKMNG-----------------EFPTWL-LENNTNLESLFLVNDSLAGPFRLPIHS 247 (590)
Q Consensus 186 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~ 247 (590)
+.+.+ +|..+.++++|+.|++++|.+.+ .+|..+ |.++++|+.|++++|.+.+.+|..+..
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 45555 78899999999999999999987 388876 349999999999999999999999999
Q ss_pred CCcccEEEccCCc-CCC-CCchhhhh------cCCCCcEEEccCceecccCCc--ccCCCCCCcEEEccCcccccccchh
Q 007762 248 HKRLRLLDISNNN-FRG-HIPVEIGD------VLPGLFSLNISMNALDGSIPS--SFGNMKFLQLLDVTNNQLTGEIPEH 317 (590)
Q Consensus 248 ~~~L~~L~l~~n~-l~~-~~~~~~~~------~~~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~ 317 (590)
+++|+.|++++|. +++ .+|..+.. .+++|+.|++++|.++ .+|. .++.+++|++|++++|.+. .+|
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-- 589 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-- 589 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--
Confidence 9999999999998 887 78876654 2359999999999999 8888 8999999999999999998 888
Q ss_pred hhcCCCCCcEEEccCCcCCCccCccccCccc-cCceeccCccccccCCccccCCCC--CCEEEccCCcccccCcccc---
Q 007762 318 LAVGCVNLEYLALSNNSLEGHMFSRNFNLTN-LKWLQLEGNHFVGEIPQSLSKCFV--LEGLFLNNNSLSGMIPRWL--- 391 (590)
Q Consensus 318 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~n~~~~~~~~~~--- 391 (590)
.+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..... |+.|++++|.+.+.+|...
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 4456899999999999998 67888999999 999999999998 77877776654 9999999999987665322
Q ss_pred C--CCCCccEEECCCCcCcCCCCcc-cCCCCCCcEEEcccCcCCCCCCCCCCCC--------cccEEECcCccCCCCCCc
Q 007762 392 G--NLTRLQHIMMPKNHLEGPIPVE-FCQLDWLQILDISDNNISGSLPSCFHPL--------SIEHVHLSKNMLHGQLKR 460 (590)
Q Consensus 392 ~--~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------~L~~L~l~~n~~~~~~~~ 460 (590)
. .+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+....+..+... +|+.|++++|.+. .+|.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 2 3458999999999999 45554 5689999999999999995555555433 8999999999996 7887
Q ss_pred cccc--cCCCCcEEEcCCCcCCCCccccccccCCCCEEECcC------CcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762 461 GTFF--NYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH------NNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 461 ~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
. +. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|
T Consensus 746 ~-l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 746 D-FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp G-GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred H-hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 6 54 89999999999999996 788899999999999976 888889999999999999999999999 6888
Q ss_pred cccccCCccccccCCCCCCCccc
Q 007762 533 PCFDNTTLHESYSNSSSPNKQFE 555 (590)
Q Consensus 533 ~~~~~l~~~~~~~~~~~~~~~~~ 555 (590)
..+. +.+...+...+++..+.
T Consensus 823 ~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 823 EKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp SCCC--SSSCEEECCSCTTCEEE
T ss_pred Hhhc--CCCCEEECCCCCCCccC
Confidence 8765 35555666667665444
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-39 Score=349.62 Aligned_cols=505 Identities=20% Similarity=0.182 Sum_probs=374.6
Q ss_pred CCCCccccccCCCCCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEE
Q 007762 1 MSSYEVNGVLRGQGFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELY 80 (590)
Q Consensus 1 ~~~~~~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~ 80 (590)
+|+|+++ +||+.+|+++++|++|+|++|+ +.+..+..+. .+++|++|+|++|.++. +++..|.++++|++|+
T Consensus 59 Ls~N~i~-~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~-~L~~L~~L~Ls~N~l~~----l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 59 LSFNPLR-HLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQ-SLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEECTTCC--CCEECTTTTT-TCTTCCEEECTTCCCCE----ECGGGGTTCTTCCEEE
T ss_pred eeCCCCC-CCCHHHHhCCCCCCEEECCCCc--CCCcChhHhc-CCCCCCEEEccCCcCCC----CCHHHhcCCCCCCEEE
Confidence 4677776 5666899999999999999994 4444444455 99999999999999975 7878899999999999
Q ss_pred eecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCc----cEEEcc
Q 007762 81 IYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRL----KVFWAK 156 (590)
Q Consensus 81 L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L----~~l~l~ 156 (590)
|++|.+++..+.+|+++++|++|++++|.+++.-....+..+++|++|++++|.+.+ +....+..+.++ ..++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhcc
Confidence 999999977777899999999999999998732223367889999999999999874 333455444433 467788
Q ss_pred CCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCc-----cccchHHhhcCCCCcEEE
Q 007762 157 NNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMN-----GEFPTWLLENNTNLESLF 231 (590)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~-----~~~~~~~~~~l~~L~~L~ 231 (590)
.|.+...... ......++.+++..........+..+..+..++...+...... .......+..+..+....
T Consensus 210 ~n~l~~i~~~----~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 210 LNPMNFIQPG----AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp TCCCCEECTT----TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred cCcccccCcc----cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 8877654322 2233356666663222222223445566677666555322111 011112234455566555
Q ss_pred ccCCCCCC---CCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCc
Q 007762 232 LVNDSLAG---PFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNN 308 (590)
Q Consensus 232 l~~~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 308 (590)
+..+.... .....+.....++.+.+.++.+. .++.. .....++.|++.+|.+....+ ..++.|+.+++..|
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDF--SYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN 359 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGG--GSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccc-ccccc--ccchhhhhhhcccccccCcCc---ccchhhhhcccccc
Confidence 54433222 22334556778899999988776 33322 226789999999998874433 34577889999988
Q ss_pred ccccccchhhhcCCCCCcEEEccCCcCCC--ccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCccccc
Q 007762 309 QLTGEIPEHLAVGCVNLEYLALSNNSLEG--HMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM 386 (590)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 386 (590)
... ..+... .+++|+.++++.|.+.. ..+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+.....
T Consensus 360 ~~~-~~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 360 KGG-NAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp CSC-CBCCCC--BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEEST
T ss_pred cCC-CCcccc--cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccc
Confidence 876 333222 48899999999998763 234445567889999999888763 455677899999999998876655
Q ss_pred Cc-cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC-CCCCCCCC-CCcccEEECcCccCCCCCCcccc
Q 007762 387 IP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS-GSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTF 463 (590)
Q Consensus 387 ~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~ 463 (590)
.+ ..+..+++++.++++.|.+.+..+..+..++.|+.|++++|.+. ...|..+. +++|++|++++|.+++ +++..|
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f 514 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAF 514 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHH
Confidence 43 46788999999999999999888888999999999999999754 34555544 7899999999999964 444559
Q ss_pred ccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCC-CCCCEEECcCCccCC
Q 007762 464 FNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNNLHG 529 (590)
Q Consensus 464 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~ 529 (590)
.++++|++|+|++|++++..+..|.++++|++|++++|++++..|..+..+ ++|+.|++++|++..
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999999999999998888999999999999999999999999999988 589999999999985
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.7e-40 Score=348.55 Aligned_cols=456 Identities=19% Similarity=0.170 Sum_probs=351.4
Q ss_pred cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT 123 (590)
Q Consensus 44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~ 123 (590)
.+...++++++++.++. +|. .+. ++|++|++++|.+.+..+..|.++++|++|++++|.++ .++...+.+++
T Consensus 29 ~~~~~~~l~ls~~~L~~----ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 100 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH----VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQ 100 (562)
T ss_dssp ----CCEEECTTSCCCS----CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCT
T ss_pred ccCCCcEEEcCCCCCcc----CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCC
Confidence 45566999999999875 664 343 78999999999999777789999999999999999998 55444899999
Q ss_pred CCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCccc
Q 007762 124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE 203 (590)
Q Consensus 124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 203 (590)
+|++|++++|.+. .++.. .+++|+.|++++|.+... ..|..+..+++|+
T Consensus 101 ~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l---------------------------~~p~~~~~l~~L~ 149 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVL---------------------------PVCKEFGNLTKLT 149 (562)
T ss_dssp TCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBC---------------------------CCCGGGGGCTTCC
T ss_pred CCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCcccc---------------------------CchHhhcccCccc
Confidence 9999999999987 45533 788888888888765321 2456788899999
Q ss_pred EEEcCCCcCccccchHHhhcCCCC--cEEEccCCCC--CCCCcCCCCCCC-cccEEEccCCcCCCCCchhhhhcCCCCcE
Q 007762 204 YVDLSHMKMNGEFPTWLLENNTNL--ESLFLVNDSL--AGPFRLPIHSHK-RLRLLDISNNNFRGHIPVEIGDVLPGLFS 278 (590)
Q Consensus 204 ~L~ls~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 278 (590)
+|++++|.+.+.. +..+++| +.|++++|.+ .+..+..+..+. ..-.+++++|.+.+.++......+++|+.
T Consensus 150 ~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 150 FLGLSAAKFRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp EEEEECSBCCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred EEecCCCccccCc----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEE
Confidence 9999999987532 3455666 9999999998 666666555543 12256888888877777666555789999
Q ss_pred EEccCce-----ecccCCcccCCCCCCcEEEccCcccccc----cchhhhcCCCCCcEEEccCCcCCCccCccc-----c
Q 007762 279 LNISMNA-----LDGSIPSSFGNMKFLQLLDVTNNQLTGE----IPEHLAVGCVNLEYLALSNNSLEGHMFSRN-----F 344 (590)
Q Consensus 279 L~L~~n~-----~~~~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-----~ 344 (590)
+++++|. +. .....+..++.|+.+++.++.+.+. ++... ..++|++|++++|.+.+.+|..+ .
T Consensus 226 L~l~~n~~~~~~l~-~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 226 SNIKLNDENCQRLM-TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSET 302 (562)
T ss_dssp EEEECCSTTHHHHH-HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred ecccccccccchHH-HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccc
Confidence 9999874 22 2233567788999999988876643 22222 24699999999999998777766 5
Q ss_pred CccccCceeccCccccccCC-cccc---CCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCC
Q 007762 345 NLTNLKWLQLEGNHFVGEIP-QSLS---KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 420 (590)
Q Consensus 345 ~l~~L~~L~l~~~~~~~~~~-~~l~---~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 420 (590)
.++.|+.+++..+.+ .+| ..+. ...+|+.|++++|.+.... ....+++|++|++++|.+.+..|..+..+++
T Consensus 303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 378 (562)
T 3a79_B 303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378 (562)
T ss_dssp SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS
T ss_pred cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC
Confidence 566666666666555 233 2221 2267999999999986432 2368899999999999999888999999999
Q ss_pred CcEEEcccCcCCCCC--CC-CCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEE
Q 007762 421 LQILDISDNNISGSL--PS-CFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLI 497 (590)
Q Consensus 421 L~~L~l~~n~l~~~~--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 497 (590)
|++|++++|.+++.. +. ...+++|+.|++++|.+.+.++...+..+++|+.|++++|.+++..|..+. ++|++|+
T Consensus 379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~ 456 (562)
T 3a79_B 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456 (562)
T ss_dssp CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence 999999999998643 22 335789999999999998768888789999999999999999887776654 7999999
Q ss_pred CcCCcccCCCcccccCCCCCCEEECcCCccCCCCccc-cccCCccccccCCCCCCCc
Q 007762 498 LGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPC-FDNTTLHESYSNSSSPNKQ 553 (590)
Q Consensus 498 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~ 553 (590)
+++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..++.+...+...+|..+
T Consensus 457 L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 9999999 78888889999999999999999 46665 7777666655555555443
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-37 Score=320.36 Aligned_cols=378 Identities=18% Similarity=0.198 Sum_probs=229.0
Q ss_pred CCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEE
Q 007762 74 VHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVF 153 (590)
Q Consensus 74 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l 153 (590)
++|++|+|++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++++|.+.+ .....+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCEE
Confidence 3455555555555444444455555555555555544434433344455555555555554431 111233333334443
Q ss_pred EccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEcc
Q 007762 154 WAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLV 233 (590)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~ 233 (590)
++++|.+.+... ....+..+++|++|++++|.+.+..|..++.++++|+.|+++
T Consensus 109 ~L~~n~l~~~~~--------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 109 TLTQCNLDGAVL--------------------------SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp ECTTSCCBTHHH--------------------------HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred eCCCCCCCcccc--------------------------CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 333333221100 011244556677777777776655555545666777777777
Q ss_pred CCCCCCCCcCCCCCC--CcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccc
Q 007762 234 NDSLAGPFRLPIHSH--KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLT 311 (590)
Q Consensus 234 ~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 311 (590)
+|.+.+..+..+..+ .+|+.|++++|.+.+..+..+. ......+..+++|++|++++|.+.
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~-----------------~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG-----------------WEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT-----------------HHHHCCTTTTCEEEEEECTTSCCC
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhcc-----------------ccccccccccceeeeEecCCCccc
Confidence 776666555544443 4566666666655422111110 001112345567888888888877
Q ss_pred cccchhhhcC--CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCcccc--CCCCCCEEEccCCcccccC
Q 007762 312 GEIPEHLAVG--CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS--KCFVLEGLFLNNNSLSGMI 387 (590)
Q Consensus 312 ~~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~n~~~~~~ 387 (590)
+..+..+... ..+|+.|++++|...+.... .+.+....+..+. ..++|+.|++++|.+.+..
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccc
Confidence 6666554321 36788888887765542110 0111111111111 2357778888888877777
Q ss_pred ccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCC
Q 007762 388 PRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYH 467 (590)
Q Consensus 388 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 467 (590)
+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~~l~ 347 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG------------------------SIDSRMFENLD 347 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------------------------EECGGGGTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC------------------------CcChhHhcCcc
Confidence 777777778888888887777666667777777777777777664 33333477889
Q ss_pred CCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCcc
Q 007762 468 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP 533 (590)
Q Consensus 468 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 533 (590)
+|+.|++++|.+++..|.+|..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999988899999999999999999999976667789999999999999999998873
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.9e-37 Score=315.45 Aligned_cols=397 Identities=22% Similarity=0.273 Sum_probs=175.0
Q ss_pred CCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCC
Q 007762 45 MPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTS 124 (590)
Q Consensus 45 l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~ 124 (590)
.++|++|++++|.+ + ++| .+++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. .+
T Consensus 10 ~~~L~~L~l~~n~l-~---~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~ 72 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-T---EMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQ 72 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HT
T ss_pred cccchhhhcccCch-h---hCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cC
Confidence 45677777777776 3 355 4577777777777777777767777777666553333332211 12
Q ss_pred CcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccE
Q 007762 125 IEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEY 204 (590)
Q Consensus 125 L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 204 (590)
+++|++++|.+++ ++. ..++|+.+++++|.+.+ +|.. .++|++
T Consensus 73 l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-----------------------------lp~~---~~~L~~ 115 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-----------------------------LPEL---PQSLKS 115 (454)
T ss_dssp CSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-----------------------------CCCC---CTTCCE
T ss_pred CCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-----------------------------cccc---cCCCcE
Confidence 3444444444331 110 11333344333333221 1111 134555
Q ss_pred EEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCc
Q 007762 205 VDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMN 284 (590)
Q Consensus 205 L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n 284 (590)
|++++|.+. .++. ..++|++|++++|.+.+ ++ .+..+++|++|++++|.++ .+|.. .++|++|++++|
T Consensus 116 L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n 183 (454)
T 1jl5_A 116 LLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNN 183 (454)
T ss_dssp EECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSS
T ss_pred EECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCC
Confidence 555555544 2221 11455555555555554 33 3555556666666665555 23321 235666666666
Q ss_pred eecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCC
Q 007762 285 ALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP 364 (590)
Q Consensus 285 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 364 (590)
.+++ +| .++.+++|++|++++|.+. .+|.. .++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ +|
T Consensus 184 ~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~ 253 (454)
T 1jl5_A 184 QLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LP 253 (454)
T ss_dssp CCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred cCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-cc
Confidence 5553 33 3555666666666666555 33321 2356666666665552 33 25556666666666665553 22
Q ss_pred ccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcc
Q 007762 365 QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSI 444 (590)
Q Consensus 365 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 444 (590)
. ..++|+.|++++|.+++ +|.. .++|+.|++++|.+.+. +. ..++|++|++++|.+++.. . .+.+|
T Consensus 254 ~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~-~--~~~~L 319 (454)
T 1jl5_A 254 D---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLC-D--LPPSL 319 (454)
T ss_dssp S---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEEC-C--CCTTC
T ss_pred c---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCccc-C--CcCcC
Confidence 2 12556666666666553 2222 25566666666665531 11 1145666666666655321 1 12356
Q ss_pred cEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC--CCcccccCC--------
Q 007762 445 EHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG--EVPVQLCKL-------- 514 (590)
Q Consensus 445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l-------- 514 (590)
+.|++++|.+.+ ++.. +++|+.|++++|.++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 320 ~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 320 EELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp CEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----
T ss_pred CEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccc
Confidence 666666666642 4432 356666666666666 3443 24566666666666665 455555555
Q ss_pred -----CCCCEEECcCCccCC--CCccccccCCc
Q 007762 515 -----NQLQLLDLSNNNLHG--PIPPCFDNTTL 540 (590)
Q Consensus 515 -----~~L~~L~l~~n~l~~--~~p~~~~~l~~ 540 (590)
++|+.|++++|++++ .+|.++..+..
T Consensus 391 i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~ 423 (454)
T 1jl5_A 391 VPELPQNLKQLHVETNPLREFPDIPESVEDLRM 423 (454)
T ss_dssp ---------------------------------
T ss_pred cccccCcCCEEECCCCcCCccccchhhHhheeC
Confidence 789999999999997 78888877654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.6e-36 Score=309.04 Aligned_cols=367 Identities=19% Similarity=0.160 Sum_probs=224.3
Q ss_pred CCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccccc-CCccccCCCCCcEEEccccccccccCCCCccCCCC
Q 007762 46 PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS-LPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTS 124 (590)
Q Consensus 46 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~ 124 (590)
++|++|+|++|.+++ +.+..|..+++|++|++++|.+.+. .+..|.++++|++|++++|.+++..+. .+.++++
T Consensus 30 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTT
T ss_pred CccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCccc
Confidence 345555555555543 3334455555555555555554422 234455555555555555555422222 4555555
Q ss_pred CcEEECcCCccccccC-ccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChh-ccCCCcc
Q 007762 125 IEELHLSNNHFQIPIS-LEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKF-LYHQHDL 202 (590)
Q Consensus 125 L~~L~ls~n~~~~~~~-~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L 202 (590)
|++|++++|.+.+..+ ...+..+++|+.|++++|.+... .|.. +..+++|
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------------------~~~~~~~~l~~L 156 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI----------------------------QPASFFLNMRRF 156 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC----------------------------CCCGGGGGCTTC
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc----------------------------CcccccCCCCcc
Confidence 5555555555443111 12244455555555544443211 1222 4455566
Q ss_pred cEEEcCCCcCccccchHHhhcC--CCCcEEEccCCCCCCCCcCC--------CCCCCcccEEEccCCcCCCCCchhhhhc
Q 007762 203 EYVDLSHMKMNGEFPTWLLENN--TNLESLFLVNDSLAGPFRLP--------IHSHKRLRLLDISNNNFRGHIPVEIGDV 272 (590)
Q Consensus 203 ~~L~ls~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 272 (590)
++|++++|.+.+..+..+ ..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..+..+...
T Consensus 157 ~~L~L~~n~l~~~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDL-LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CEEECTTCCBSCCCTTTS-GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred cEEeCCCCcccccChhhh-hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 666666666554444332 232 46666666666665543322 3456789999999999887777766543
Q ss_pred --CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccC
Q 007762 273 --LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLK 350 (590)
Q Consensus 273 --~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 350 (590)
.++|+.|++++|...+.... ...++.+ ... .+. ....++|+.|++++|.+.+..+..+..+++|+
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~-----~~~----~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 302 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFG-HTNFKDP-----DNF----TFK---GLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTT-CCSSCCC-----CTT----TTG---GGTTSCCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccccceeeEeeccccccccccc-hhhhccC-----ccc----ccc---cccccCceEEEecCccccccchhhcccCCCCC
Confidence 26899999988875532111 1111110 000 000 01246788888888888777777777888888
Q ss_pred ceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCc
Q 007762 351 WLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNN 430 (590)
Q Consensus 351 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 430 (590)
+|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 88888888877777778888888888888888877777778888888888888888877777788888888888888888
Q ss_pred CCCCCCCCC-CCCcccEEECcCccCCCCCC
Q 007762 431 ISGSLPSCF-HPLSIEHVHLSKNMLHGQLK 459 (590)
Q Consensus 431 l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~ 459 (590)
+++..+..+ .+++|+.|++++|++.+..+
T Consensus 383 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 887666554 36788888888888876665
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.1e-36 Score=306.04 Aligned_cols=413 Identities=21% Similarity=0.240 Sum_probs=216.1
Q ss_pred CCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCC-------------CcEEEeecc
Q 007762 18 FKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVH-------------LQELYIYNN 84 (590)
Q Consensus 18 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~-------------L~~L~L~~n 84 (590)
.++|++|+++++ .+ +.+|..+. .+++|++|++++|.+.+ .++ ..++.+.+ +++|++++|
T Consensus 10 ~~~L~~L~l~~n--~l-~~iP~~i~-~L~~L~~L~l~~n~~~~---~~p-~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 10 NTFLQEPLRHSS--NL-TEMPVEAE-NVKSKTEYYNAWSEWER---NAP-PGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHH---TSC-TTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccchhhhcccC--ch-hhCChhHh-cccchhhhhccCCcccc---cCC-cccccchhcchhhhhhhhccCCCEEEecCC
Confidence 356666666666 33 56666665 66666666666665544 233 44555544 377777777
Q ss_pred cccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccc
Q 007762 85 DLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEI 164 (590)
Q Consensus 85 ~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 164 (590)
.+++ +|.. .++|++|++++|.++ .+|. . +++|++|++++|.+.+ ++ . ..++|++|++++|.+
T Consensus 82 ~l~~-lp~~---~~~L~~L~l~~n~l~-~lp~-~---~~~L~~L~l~~n~l~~-l~--~--~~~~L~~L~L~~n~l---- 143 (454)
T 1jl5_A 82 GLSS-LPEL---PPHLESLVASCNSLT-ELPE-L---PQSLKSLLVDNNNLKA-LS--D--LPPLLEYLGVSNNQL---- 143 (454)
T ss_dssp CCSC-CCSC---CTTCSEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCSC-CC--S--CCTTCCEEECCSSCC----
T ss_pred cccc-CCCC---cCCCCEEEccCCcCC-cccc-c---cCCCcEEECCCCccCc-cc--C--CCCCCCEEECcCCCC----
Confidence 7663 3432 356777777777776 3554 1 3667777777776652 11 0 013455555544432
Q ss_pred cCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCC
Q 007762 165 TQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLP 244 (590)
Q Consensus 165 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 244 (590)
.+ +| .+..+++|++|++++|.+. .+|. ...+|+.|++++|.+.+ .+ .
T Consensus 144 ------------------------~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~-l~-~ 190 (454)
T 1jl5_A 144 ------------------------EK-LP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-E 190 (454)
T ss_dssp ------------------------SS-CC-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CC-C
T ss_pred ------------------------CC-Cc-ccCCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCc-Cc-c
Confidence 22 33 3666777888888888776 3553 23578888888887776 33 4
Q ss_pred CCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCC
Q 007762 245 IHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVN 324 (590)
Q Consensus 245 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 324 (590)
+..+++|+.|++++|.++ .+|.. .++|++|++++|.++ .+|. ++.+++|++|++++|.+. .+|. .+++
T Consensus 191 ~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~----~~~~ 258 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPD----LPPS 258 (454)
T ss_dssp CTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCS----CCTT
T ss_pred ccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC-cccc----cccc
Confidence 777888888888888877 34432 358888888888887 5664 778888888888888887 4553 2467
Q ss_pred CcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762 325 LEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404 (590)
Q Consensus 325 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 404 (590)
|+.|++++|.+.+ ++.. .++|++|++++|.+.+. +. ..++|++|++++|.+++. +. ..++|+.|++++
T Consensus 259 L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~ 326 (454)
T 1jl5_A 259 LEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSN 326 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCS
T ss_pred cCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCC
Confidence 8888888888776 3332 36788888888877642 21 125788888888877642 11 124788888888
Q ss_pred CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCC--CCCccccccCCCCcEEEcCCCcCCCC
Q 007762 405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHG--QLKRGTFFNYHSLVTLDLSYNRLNGS 482 (590)
Q Consensus 405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~ 482 (590)
|++.+ +|.. +++|++|++++|.+++ +|. .+++|++|++++|.+++ .+|.. +..| +.|.+.+.
T Consensus 327 N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~--~l~~L~~L~L~~N~l~~l~~ip~~-------l~~L--~~n~~~~~ 390 (454)
T 1jl5_A 327 NKLIE-LPAL---PPRLERLIASFNHLAE-VPE--LPQNLKQLHVEYNPLREFPDIPES-------VEDL--RMNSHLAE 390 (454)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSSCCCCCTT-------CCEE--ECCC----
T ss_pred Ccccc-cccc---CCcCCEEECCCCcccc-ccc--hhhhccEEECCCCCCCcCCCChHH-------HHhh--hhcccccc
Confidence 88775 4443 4678888888888774 343 36778888888887765 44433 2222 33555555
Q ss_pred ccccccccCCCCEEECcCCcccC--CCcccccCCCCCCEEECcCCccCCCCccccccC
Q 007762 483 ISDWVDGLSQLSHLILGHNNLEG--EVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT 538 (590)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 538 (590)
+|.. +++|++|++++|++++ .+|. +++.|.+.+|.+.+.+|......
T Consensus 391 i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 391 VPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp ----------------------------------------------------------
T ss_pred cccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHHh
Confidence 5553 4789999999999986 4553 46778899999988777665543
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5e-34 Score=295.91 Aligned_cols=345 Identities=24% Similarity=0.313 Sum_probs=190.7
Q ss_pred CCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccE
Q 007762 73 LVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKV 152 (590)
Q Consensus 73 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~ 152 (590)
+++++.|+++++.+. .+| .+..+++|++|++++|.++ .++. +.++++|++|++++|.+.+
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~--------------- 104 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIAD--------------- 104 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC---------------
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCcccc---------------
Confidence 445666666666655 233 2555666666666666655 3332 5555556666655554431
Q ss_pred EEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEc
Q 007762 153 FWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFL 232 (590)
Q Consensus 153 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l 232 (590)
.+. +..+++|++|++++|.+.+ ++. +..+++|+.|++
T Consensus 105 ---------------------------------------~~~-~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 105 ---------------------------------------ITP-LANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLEL 141 (466)
T ss_dssp ---------------------------------------CGG-GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCSEEEE
T ss_pred ---------------------------------------Chh-hcCCCCCCEEECCCCCCCC-ChH--HcCCCCCCEEEC
Confidence 111 4456677777777777663 332 356666666666
Q ss_pred cCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCccccc
Q 007762 233 VNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG 312 (590)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 312 (590)
++|.+.+.. .+..+++|+.|++++ .+. ..+. +. .+++|+.|++++|.+++ + ..+..+++|++|++++|.+.
T Consensus 142 ~~n~l~~~~--~~~~l~~L~~L~l~~-~~~-~~~~-~~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~- 212 (466)
T 1o6v_A 142 SSNTISDIS--ALSGLTSLQQLSFGN-QVT-DLKP-LA-NLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQIS- 212 (466)
T ss_dssp EEEEECCCG--GGTTCTTCSEEEEEE-SCC-CCGG-GT-TCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC-
T ss_pred CCCccCCCh--hhccCCcccEeecCC-ccc-Cchh-hc-cCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccc-
Confidence 666655522 245566666666642 232 1111 22 24555555555555542 1 12444555555555555554
Q ss_pred ccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccC
Q 007762 313 EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLG 392 (590)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 392 (590)
+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +.
T Consensus 213 ------------------------~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 213 ------------------------DITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp ------------------------CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred ------------------------cccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 3222 33344444444444444321 234445555555555555543322 45
Q ss_pred CCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEE
Q 007762 393 NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTL 472 (590)
Q Consensus 393 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 472 (590)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ ...+++|+.|++++|.+.+..+ +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCCEe
Confidence 55555555555555553222 5555555566665555554332 2335556666666666543332 5567777888
Q ss_pred EcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762 473 DLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 473 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
++++|.+++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 8888777754 356777788888888888776655 6777788888888887775
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-34 Score=297.27 Aligned_cols=357 Identities=20% Similarity=0.215 Sum_probs=185.8
Q ss_pred cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT 123 (590)
Q Consensus 44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~ 123 (590)
.+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++ +..+++|++|++++|.++ .++ +.+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~----~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~ 106 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD----MT--GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT-NLD---VTPLT 106 (457)
T ss_dssp HHTTCCEEECCSSCCCC----CT--TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCC---CTTCT
T ss_pred HcCCCCEEEccCCCccc----Ch--hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCc-eee---cCCCC
Confidence 55666666666666654 32 46666666666666666664 22 556666666666666665 232 55666
Q ss_pred CCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCccc
Q 007762 124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE 203 (590)
Q Consensus 124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 203 (590)
+|++|++++|.+.+ ++ +..+++|+.|++++|.+... .+..+++|+
T Consensus 107 ~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-------------------------------~l~~l~~L~ 151 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-------------------------------DVSHNTQLT 151 (457)
T ss_dssp TCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-------------------------------CCTTCTTCC
T ss_pred cCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-------------------------------ccccCCcCC
Confidence 66666666666542 11 44445555554444432210 023344555
Q ss_pred EEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccC
Q 007762 204 YVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM 283 (590)
Q Consensus 204 ~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 283 (590)
+|++++|...+.++ +..+++|+.|++++|.+.+. + +..+++|+.|++++|.+++ ++ +.. +++|++|++++
T Consensus 152 ~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~-~~--l~~-l~~L~~L~Ls~ 221 (457)
T 3bz5_A 152 ELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITK-LD--LNQ-NIQLTFLDCSS 221 (457)
T ss_dssp EEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSC-CC--CTT-CTTCSEEECCS
T ss_pred EEECCCCCcccccc---cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCe-ec--ccc-CCCCCEEECcC
Confidence 55555553333332 24455555555555555442 1 4444555555555555442 11 111 44444444444
Q ss_pred ceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccC
Q 007762 284 NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEI 363 (590)
Q Consensus 284 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 363 (590)
|.+++ +| ++.++ +|+.|++++|.+.+.. +..+++|+.|+++++
T Consensus 222 N~l~~-ip--~~~l~-------------------------~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n------ 264 (457)
T 3bz5_A 222 NKLTE-ID--VTPLT-------------------------QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT------ 264 (457)
T ss_dssp SCCSC-CC--CTTCT-------------------------TCSEEECCSSCCSCCC---CTTCTTCCEEECTTC------
T ss_pred Ccccc-cC--ccccC-------------------------CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC------
Confidence 44443 22 34444 4444444444444322 223344444443332
Q ss_pred CccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCc
Q 007762 364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 443 (590)
Q Consensus 364 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 443 (590)
+|+.+++++|...+.+| +..+++|+.|++++|...+.+|. ..++|+.|++++| ++
T Consensus 265 --------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~ 319 (457)
T 3bz5_A 265 --------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PK 319 (457)
T ss_dssp --------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TT
T ss_pred --------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc------------cc
Confidence 23334444444433332 33445555555555554433332 2334444444443 35
Q ss_pred ccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECc
Q 007762 444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS 523 (590)
Q Consensus 444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 523 (590)
|++|++++|.+++ ++ +..+++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|..++++
T Consensus 320 L~~L~L~~N~l~~-l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~ 382 (457)
T 3bz5_A 320 LVYLYLNNTELTE-LD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLT 382 (457)
T ss_dssp CCEEECTTCCCSC-CC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred CCEEECCCCcccc-cc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccc
Confidence 5666666666644 32 6667778888888887774 24556667777777754 234556677888
Q ss_pred CCccCCCCcccccc
Q 007762 524 NNNLHGPIPPCFDN 537 (590)
Q Consensus 524 ~n~l~~~~p~~~~~ 537 (590)
+|+++|.+|..+..
T Consensus 383 ~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 383 NNSLTIAVSPDLLD 396 (457)
T ss_dssp TTBEEEECCTTCBC
T ss_pred cCcEEEEcChhHhc
Confidence 88888877766543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-33 Score=291.52 Aligned_cols=347 Identities=27% Similarity=0.358 Sum_probs=230.5
Q ss_pred CCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCcccc
Q 007762 16 PHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMA 95 (590)
Q Consensus 16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 95 (590)
..+++|+.|+++++.+ ..++. +. .+++|++|++++|.+.+ +++ +..+++|++|++++|.+.+..+ +.
T Consensus 43 ~~l~~l~~L~l~~~~i---~~l~~-~~-~l~~L~~L~Ls~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 109 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGI---KSIDG-VE-YLNNLTQINFSNNQLTD----ITP--LKNLTKLVDILMNNNQIADITP--LA 109 (466)
T ss_dssp HHHHTCCEEECCSSCC---CCCTT-GG-GCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG--GT
T ss_pred hHhccccEEecCCCCC---ccCcc-hh-hhcCCCEEECCCCccCC----chh--hhccccCCEEECCCCccccChh--hc
Confidence 4466777777777743 23442 44 67777777777777754 442 7777777777777777774333 77
Q ss_pred CCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCc
Q 007762 96 NMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNF 175 (590)
Q Consensus 96 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 175 (590)
++++|++|++++|.++ .++. +.++++|++|++++|.+.+ ...+..+++|+.++++++ +
T Consensus 110 ~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~---~~~~~~l~~L~~L~l~~~-~--------------- 167 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQ-V--------------- 167 (466)
T ss_dssp TCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECC---CGGGTTCTTCSEEEEEES-C---------------
T ss_pred CCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCC---ChhhccCCcccEeecCCc-c---------------
Confidence 7777777777777776 4443 6777777777777777653 124666677777665421 1
Q ss_pred ccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEE
Q 007762 176 QLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLD 255 (590)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 255 (590)
.. . ..+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 168 -------------~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 227 (466)
T 1o6v_A 168 -------------TD-L-KPLANLTTLERLDISSNKVSD-ISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELS 227 (466)
T ss_dssp -------------CC-C-GGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred -------------cC-c-hhhccCCCCCEEECcCCcCCC-Chh--hccCCCCCEEEecCCccccccc--ccccCCCCEEE
Confidence 01 1 126677788888888887763 332 4678888888888887776544 55677888888
Q ss_pred ccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcC
Q 007762 256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL 335 (590)
Q Consensus 256 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i 335 (590)
+++|.+++ ++ .+. .+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|+.|++++|.+
T Consensus 228 l~~n~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 228 LNGNQLKD-IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQL 299 (466)
T ss_dssp CCSSCCCC-CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCC
T ss_pred CCCCCccc-ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcc
Confidence 88887763 33 233 36778888888887774433 677777888888877776 3443 33577777777777777
Q ss_pred CCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCccc
Q 007762 336 EGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 415 (590)
Q Consensus 336 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 415 (590)
.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|++.+..| +
T Consensus 300 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 371 (466)
T 1o6v_A 300 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 371 (466)
T ss_dssp SCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G
T ss_pred cCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--h
Confidence 65433 5567777777777777665443 55677777777777776644 356667777777777777665544 6
Q ss_pred CCCCCCcEEEcccCcCCC
Q 007762 416 CQLDWLQILDISDNNISG 433 (590)
Q Consensus 416 ~~l~~L~~L~l~~n~l~~ 433 (590)
..+++|+.|++++|.+++
T Consensus 372 ~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 372 ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCTTCCEEECCCEEEEC
T ss_pred hcCCCCCEEeccCCcccC
Confidence 666777777777776664
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.7e-34 Score=291.20 Aligned_cols=358 Identities=18% Similarity=0.191 Sum_probs=263.5
Q ss_pred CCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCcc
Q 007762 14 GFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWC 93 (590)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 93 (590)
.++++++|++|+++++ .+.+ +| .+. .+++|++|++++|.+++ + .+..+++|++|++++|.+++. +
T Consensus 37 ~~~~l~~L~~L~Ls~n--~l~~-~~-~l~-~l~~L~~L~Ls~n~l~~----~---~~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS--SITD-MT-GIE-KLTGLTKLICTSNNITT----L---DLSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp EHHHHTTCCEEECCSS--CCCC-CT-TGG-GCTTCSEEECCSSCCSC----C---CCTTCTTCSEEECCSSCCSCC-C--
T ss_pred ChhHcCCCCEEEccCC--Cccc-Ch-hhc-ccCCCCEEEccCCcCCe----E---ccccCCCCCEEECcCCCCcee-e--
Confidence 5888999999999999 4454 45 566 89999999999999976 4 288999999999999999953 3
Q ss_pred ccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCC
Q 007762 94 MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAP 173 (590)
Q Consensus 94 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 173 (590)
+..+++|++|++++|.++ .++ +..+++|++|++++|.+.+ + .+..+++|+.+++++|...+.
T Consensus 102 ~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~---------- 163 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITK---------- 163 (457)
T ss_dssp CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCC----------
T ss_pred cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCcccc----------
Confidence 889999999999999998 453 7899999999999999885 2 377889999999988742211
Q ss_pred CcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccE
Q 007762 174 NFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRL 253 (590)
Q Consensus 174 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 253 (590)
+ .+..+++|+.|++++|.+.+ +| +..+++|+.|++++|.+.+. .+..+++|+.
T Consensus 164 ------------------~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~ 216 (457)
T 3bz5_A 164 ------------------L--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTF 216 (457)
T ss_dssp ------------------C--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSE
T ss_pred ------------------c--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCE
Confidence 1 24567899999999999984 55 47899999999999999985 4788999999
Q ss_pred EEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCC
Q 007762 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN 333 (590)
Q Consensus 254 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 333 (590)
|++++|.+++ +| +. .+++|+.|++++|.+++.. ++.+++|+.|++++| +|+.+++++|
T Consensus 217 L~Ls~N~l~~-ip--~~-~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n 274 (457)
T 3bz5_A 217 LDCSSNKLTE-ID--VT-PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHN 274 (457)
T ss_dssp EECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTC
T ss_pred EECcCCcccc-cC--cc-ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCC
Confidence 9999999985 66 43 3889999999999998643 456778888887654 3455667777
Q ss_pred cCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCc
Q 007762 334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV 413 (590)
Q Consensus 334 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 413 (590)
...+..| +..+++|+.|++++|...+.+|. ....|+.+++++| ++|+.|++++|++.+.
T Consensus 275 ~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l--- 333 (457)
T 3bz5_A 275 TQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL--- 333 (457)
T ss_dssp TTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---
T ss_pred ccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---
Confidence 6655444 34567777777777765554442 2334444433333 5666677777666652
Q ss_pred ccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCC
Q 007762 414 EFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQL 493 (590)
Q Consensus 414 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 493 (590)
.+..+++|+.|++++|++++ ++.|..|++++|.+.+. ..+..|
T Consensus 334 ~l~~l~~L~~L~l~~N~l~~--------------------------------l~~L~~L~l~~n~l~g~-----~~~~~l 376 (457)
T 3bz5_A 334 DVSHNTKLKSLSCVNAHIQD--------------------------------FSSVGKIPALNNNFEAE-----GQTITM 376 (457)
T ss_dssp CCTTCTTCSEEECCSSCCCB--------------------------------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred ccccCCcCcEEECCCCCCCC--------------------------------ccccccccccCCcEEec-----ceeeec
Confidence 25566666666666666653 12344455556655543 234456
Q ss_pred CEEECcCCcccCCCcccc
Q 007762 494 SHLILGHNNLEGEVPVQL 511 (590)
Q Consensus 494 ~~L~L~~n~l~~~~~~~~ 511 (590)
+.+++++|+++|.+|..+
T Consensus 377 ~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCBCCBTTBEEEECCTTC
T ss_pred CccccccCcEEEEcChhH
Confidence 666777777776666544
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=292.45 Aligned_cols=321 Identities=19% Similarity=0.139 Sum_probs=269.8
Q ss_pred cEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEcc
Q 007762 203 EYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNIS 282 (590)
Q Consensus 203 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 282 (590)
+.++.++..+. .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECC
Confidence 56788887776 677643 468999999999999887888999999999999999998555666655 8899999999
Q ss_pred CceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccccc
Q 007762 283 MNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGE 362 (590)
Q Consensus 283 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 362 (590)
+|.++...+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99998666667889999999999999998 44444455689999999999999888888888999999999999998866
Q ss_pred CCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CC
Q 007762 363 IPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HP 441 (590)
Q Consensus 363 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~ 441 (590)
.+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+++..+..+ .+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 66778899999999999999988877889999999999999988777777666666799999999999885543333 47
Q ss_pred CcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEE
Q 007762 442 LSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLD 521 (590)
Q Consensus 442 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 521 (590)
++|+.|++++|.+. .++...+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|+.|+
T Consensus 248 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 248 VYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp TTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred cccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 88999999999985 55555588899999999999999988888899999999999999999977777788899999999
Q ss_pred CcCCccCCC
Q 007762 522 LSNNNLHGP 530 (590)
Q Consensus 522 l~~n~l~~~ 530 (590)
+++|++...
T Consensus 327 l~~N~l~c~ 335 (477)
T 2id5_A 327 LDSNPLACD 335 (477)
T ss_dssp CCSSCEECS
T ss_pred ccCCCccCc
Confidence 999998854
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=291.49 Aligned_cols=341 Identities=20% Similarity=0.185 Sum_probs=282.2
Q ss_pred CChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhh
Q 007762 192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD 271 (590)
Q Consensus 192 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 271 (590)
+|..+ .++++.|++++|.+.+..+.. +.++++|++|++++|.+.+..+..+..+++|+.|++++|.++ .++...+.
T Consensus 26 ip~~~--~~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 101 (477)
T 2id5_A 26 VPEGI--PTETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFT 101 (477)
T ss_dssp CCSCC--CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSST
T ss_pred CCCCC--CCCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCccccc
Confidence 44433 358999999999998544444 589999999999999999988889999999999999999998 66665555
Q ss_pred cCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCc
Q 007762 272 VLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKW 351 (590)
Q Consensus 272 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 351 (590)
.+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 5899999999999999888889999999999999999998 454444557999999999999999877777889999999
Q ss_pred eeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcC
Q 007762 352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNI 431 (590)
Q Consensus 352 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 431 (590)
|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 99999999988788899999999999999988777777666677999999999999965556899999999999999999
Q ss_pred CCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccc
Q 007762 432 SGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510 (590)
Q Consensus 432 ~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 510 (590)
++..+..+. +++|+.|++++|.+.+ ++...|..+++|+.|++++|.+++..+..|..+++|++|++++|++...-+..
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred CccChhhccccccCCEEECCCCccce-ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence 977776554 7899999999999965 44445999999999999999999888888999999999999999998543211
Q ss_pred ccCCCCCCEEECcCCccCCCCccccccCC
Q 007762 511 LCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539 (590)
Q Consensus 511 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 539 (590)
+ -......+++.++...-.-|..+++..
T Consensus 340 ~-~~~~~~~~~~~~~~~~C~~p~~~~g~~ 367 (477)
T 2id5_A 340 W-VFRRRWRLNFNRQQPTCATPEFVQGKE 367 (477)
T ss_dssp H-HHTTTTSSCCTTCCCBEEESGGGTTCB
T ss_pred h-HHhhhhccccCccCceeCCchHHcCCc
Confidence 1 112233344555554444455555443
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.3e-31 Score=267.13 Aligned_cols=307 Identities=21% Similarity=0.300 Sum_probs=248.7
Q ss_pred ccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCC
Q 007762 196 LYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPG 275 (590)
Q Consensus 196 l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 275 (590)
+..+++|++|+++++.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++ .+. .+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGT-TCTT
T ss_pred chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-HHc-CCCc
Confidence 346778999999998886 4554 4789999999999998887544 778899999999999887 444 343 3889
Q ss_pred CcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceecc
Q 007762 276 LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLE 355 (590)
Q Consensus 276 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 355 (590)
|++|++++|.+++ ++. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 112 L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 112 LRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp CSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred CCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 9999999999884 343 88899999999999966545544 3468899999999998876543 7788999999999
Q ss_pred CccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCC
Q 007762 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 435 (590)
Q Consensus 356 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 435 (590)
+|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence 998874433 7788999999999999885543 7888999999999999885433 88899999999999998853
Q ss_pred CCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCC
Q 007762 436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN 515 (590)
Q Consensus 436 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 515 (590)
+....+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..| +..++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred hhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 445567899999999998854 43 37889999999999999998888899999999999999999996655 88899
Q ss_pred CCCEEECcCCccC
Q 007762 516 QLQLLDLSNNNLH 528 (590)
Q Consensus 516 ~L~~L~l~~n~l~ 528 (590)
+|+.|++++|+++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999986
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-31 Score=268.95 Aligned_cols=310 Identities=22% Similarity=0.197 Sum_probs=251.9
Q ss_pred CCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCc
Q 007762 198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLF 277 (590)
Q Consensus 198 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 277 (590)
.+++++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. +++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC-CCCCC
Confidence 3578899999998876 678777788999999999999988877778888999999999999988544444444 88999
Q ss_pred EEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCc
Q 007762 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN 357 (590)
Q Consensus 278 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 357 (590)
+|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+. .+..+++|+.|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 9999999988544445688999999999999988 55555455688999999999988764 2456788999999988
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCC
Q 007762 358 HFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPS 437 (590)
Q Consensus 358 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 437 (590)
.+.+ +...++|+.|++++|.+... +. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 8763 23456899999999988754 32 2347899999999998753 5788899999999999999877666
Q ss_pred CC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCC
Q 007762 438 CF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQ 516 (590)
Q Consensus 438 ~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 516 (590)
.+ .+++|++|++++|.++ .++.. +..+++|+.|++++|.++ .+|..+..+++|++|++++|+++.. + +..+++
T Consensus 267 ~~~~l~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~ 340 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT 340 (390)
T ss_dssp GGTTCSSCCEEECCSSCCC-EEECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred HccccccCCEEECCCCcCc-ccCcc-cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhcc
Confidence 55 4788999999999984 45554 577899999999999998 5677788899999999999999844 3 778899
Q ss_pred CCEEECcCCccCC
Q 007762 517 LQLLDLSNNNLHG 529 (590)
Q Consensus 517 L~~L~l~~n~l~~ 529 (590)
|+.|++++|++..
T Consensus 341 L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 341 LKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSSCEEH
T ss_pred CCEEEcCCCCccc
Confidence 9999999999985
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.2e-30 Score=276.74 Aligned_cols=310 Identities=22% Similarity=0.192 Sum_probs=241.9
Q ss_pred CCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcE
Q 007762 199 QHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFS 278 (590)
Q Consensus 199 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 278 (590)
+.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+. .+++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCCE
Confidence 467888888888876 67777778888888888888888887777788888888888888888754444444 3788888
Q ss_pred EEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcc
Q 007762 279 LNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH 358 (590)
Q Consensus 279 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 358 (590)
|++++|.+++..+..|+.+++|++|++++|.+. .++...+..+++|++|++++|.+.+.. +..+++|+.|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 888888888555555688888888888888887 444444446888888888888887642 4557888888888887
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCC
Q 007762 359 FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 438 (590)
Q Consensus 359 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 438 (590)
+.+ +...++|+.|++++|.+....+. + .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 763 33456788888888888744322 2 3678889999888875 467788888999999999888776665
Q ss_pred C-CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCC
Q 007762 439 F-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQL 517 (590)
Q Consensus 439 ~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 517 (590)
+ .+++|+.|++++|.++ .++.. +..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++. + +..+++|
T Consensus 274 ~~~l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L 347 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLV-ALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 347 (597)
T ss_dssp GTTCSSCCEEECTTSCCC-EEECS-SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred hcCccCCCEEECCCCCCC-CCCcc-cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC
Confidence 5 3788899999998885 45554 567899999999999998 6777888999999999999999854 3 7788999
Q ss_pred CEEECcCCccCCC
Q 007762 518 QLLDLSNNNLHGP 530 (590)
Q Consensus 518 ~~L~l~~n~l~~~ 530 (590)
+.|++++|++.+.
T Consensus 348 ~~L~l~~N~~~~~ 360 (597)
T 3oja_B 348 KNLTLSHNDWDCN 360 (597)
T ss_dssp SEEECCSSCEEHH
T ss_pred CEEEeeCCCCCCh
Confidence 9999999999854
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-30 Score=262.32 Aligned_cols=309 Identities=20% Similarity=0.196 Sum_probs=257.4
Q ss_pred ccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEE
Q 007762 176 QLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLD 255 (590)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 255 (590)
+++.+++ ..+.+....+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 46 ~l~~l~l-~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 46 NQKIVTF-KNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCSEEEE-ESCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEe-cCCchhhCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 3344444 3333333344557889999999999999974 4443458999999999999999998888899999999999
Q ss_pred ccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcC
Q 007762 256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSL 335 (590)
Q Consensus 256 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i 335 (590)
+++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++. ..+++|+.+++++|.+
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~---~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG---GGCTTCSEEECCSSCC
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc---ccccccceeecccccc
Confidence 9999998 777776555899999999999999877888999999999999999998 4442 2478999999999988
Q ss_pred CCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCccc
Q 007762 336 EGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEF 415 (590)
Q Consensus 336 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 415 (590)
.+. ...++|++|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..|
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 753 2356899999999998754 33 2357999999999999864 578899999999999999998889999
Q ss_pred CCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCE
Q 007762 416 CQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSH 495 (590)
Q Consensus 416 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 495 (590)
..+++|++|++++|.+++.......+++|+.|++++|.+. .++.. +..+++|+.|++++|.+++. + +..+++|++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERN-QPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGG-HHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcc-ccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 9999999999999999876555556899999999999995 66666 78899999999999999854 3 678899999
Q ss_pred EECcCCcccCC
Q 007762 496 LILGHNNLEGE 506 (590)
Q Consensus 496 L~L~~n~l~~~ 506 (590)
|++++|++...
T Consensus 344 L~l~~N~~~~~ 354 (390)
T 3o6n_A 344 LTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCEEHH
T ss_pred EEcCCCCccch
Confidence 99999999854
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=9.4e-30 Score=253.68 Aligned_cols=303 Identities=21% Similarity=0.292 Sum_probs=253.7
Q ss_pred hcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCc
Q 007762 222 ENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQ 301 (590)
Q Consensus 222 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 301 (590)
..+++|+.|+++++.+.... .+..+++|++|++++|.++ .++. +. .+++|++|++++|.++. ++ .+..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT-DISP-LS-NLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccc-cchh-hh-cCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 57899999999999988643 3788999999999999998 4555 43 48999999999999884 43 689999999
Q ss_pred EEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCC
Q 007762 302 LLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN 381 (590)
Q Consensus 302 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 381 (590)
+|++++|.+. .++. +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 114 ~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCccc-Cchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 9999999998 5655 4469999999999996655443 48889999999999999875433 789999999999999
Q ss_pred cccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCcc
Q 007762 382 SLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRG 461 (590)
Q Consensus 382 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 461 (590)
.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ ...+++|++|++++|.+.+ ++
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-- 259 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-IN-- 259 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG--
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-Ch--
Confidence 9985433 8889999999999999985443 8889999999999999986554 5568899999999999854 42
Q ss_pred ccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCcc
Q 007762 462 TFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLH 541 (590)
Q Consensus 462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~ 541 (590)
.+..+++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..| +..++.+
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 388899999999999999964 458899999999999999998888999999999999999999997666 5555555
Q ss_pred ccccCCCC
Q 007762 542 ESYSNSSS 549 (590)
Q Consensus 542 ~~~~~~~~ 549 (590)
...+...+
T Consensus 336 ~~L~l~~N 343 (347)
T 4fmz_A 336 DSADFANQ 343 (347)
T ss_dssp SEESSSCC
T ss_pred ceeehhhh
Confidence 54444433
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-30 Score=278.16 Aligned_cols=330 Identities=20% Similarity=0.168 Sum_probs=269.1
Q ss_pred cCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcE
Q 007762 223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQL 302 (590)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 302 (590)
.+++++.++++++.+....+..+..+++|+.|++++|.+++..+..+.. +++|++|++++|.+++..|..|+.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 5678999999999988866666788999999999999998544445544 899999999999999888888999999999
Q ss_pred EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCc
Q 007762 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS 382 (590)
Q Consensus 303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 382 (590)
|++++|.+. .+|...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence 999999998 88887777799999999999999998888899999999999999998854 25668899999999998
Q ss_pred ccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccc
Q 007762 383 LSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGT 462 (590)
Q Consensus 383 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 462 (590)
+++ +...++|+.|++++|.+... +..+ .++|+.|++++|.+++. +....+++|+.|++++|.+.+..+..
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~- 273 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHP- 273 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGG-
T ss_pred ccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHH-
Confidence 874 34557899999999998743 3222 36899999999999863 44556899999999999997655555
Q ss_pred cccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccc
Q 007762 463 FFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542 (590)
Q Consensus 463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~ 542 (590)
+..+++|+.|+|++|.+++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..+.. +.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---L~ 348 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT---LK 348 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCC---CS
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCC---CC
Confidence 8999999999999999995 6777788999999999999999 78888999999999999999999765444444 33
Q ss_pred cccCCCCCCCccc-----eeccccCCCCCCCCCcc
Q 007762 543 SYSNSSSPNKQFE-----IFFFIQGPQGHPRLATL 572 (590)
Q Consensus 543 ~~~~~~~~~~~~~-----~~~~~~~~~~np~~~~~ 572 (590)
..+...++..+-. ..+....+.+++..|+.
T Consensus 349 ~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp EEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCT
T ss_pred EEEeeCCCCCChhHHHHHHHHhhhccccccccCCc
Confidence 4444455443211 11223445677777764
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=9.1e-31 Score=256.14 Aligned_cols=233 Identities=32% Similarity=0.477 Sum_probs=140.8
Q ss_pred CCcEEEccCceecc--cCCcccCCCCCCcEEEccC-cccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCc
Q 007762 275 GLFSLNISMNALDG--SIPSSFGNMKFLQLLDVTN-NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKW 351 (590)
Q Consensus 275 ~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 351 (590)
+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+. .+++|++|++++|.+.+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEE--------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCC--------------
Confidence 55566666666555 5555555555555555553 555444444433 24455555555554444
Q ss_pred eeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCC-CCcEEEcccCc
Q 007762 352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLD-WLQILDISDNN 430 (590)
Q Consensus 352 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~ 430 (590)
..|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.
T Consensus 116 ----------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 116 ----------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ----------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ----------cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 4444444455555555555555444444455555555555555555444455555554 55555555555
Q ss_pred CCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccc
Q 007762 431 ISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQ 510 (590)
Q Consensus 431 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 510 (590)
+++..|..+....|+.|++++|.+.+.++.. +..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..
T Consensus 186 l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEECCGGGGGCCCSEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred eeccCChHHhCCcccEEECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 5544444444333555555555554444433 77778888888888888765555 677788888888888888888888
Q ss_pred ccCCCCCCEEECcCCccCCCCccc
Q 007762 511 LCKLNQLQLLDLSNNNLHGPIPPC 534 (590)
Q Consensus 511 ~~~l~~L~~L~l~~n~l~~~~p~~ 534 (590)
+..+++|+.|++++|++++.+|..
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS
T ss_pred HhcCcCCCEEECcCCcccccCCCC
Confidence 888888888888888888877765
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-29 Score=248.94 Aligned_cols=266 Identities=20% Similarity=0.241 Sum_probs=137.6
Q ss_pred cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEE
Q 007762 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLA 329 (590)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 329 (590)
+|+.|++++|.+++..+..+.. +++|++|++++|.+++..|..++.+++|++|++++|.+. .+|..++ ++|++|+
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~ 129 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELR 129 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEE
T ss_pred CCeEEECCCCcCCccCHhHhhC-CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEE
Confidence 4444444444444222222222 444555555555444444444555555555555555544 4443331 4455555
Q ss_pred ccCCcCCCccCccccCccccCceeccCccccc--cCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcC
Q 007762 330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVG--EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407 (590)
Q Consensus 330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 407 (590)
+++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 55555544444444455555555555555431 333444444 55555555555543 222222 4555555665555
Q ss_pred cCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccc
Q 007762 408 EGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDW 486 (590)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 486 (590)
.+..+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+. .+|.. +..+++|+.|++++|.+++..+..
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT-GGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh-hhcCccCCEEECCCCCCCccChhH
Confidence 55444555555566666666665554444322 2445555555555553 45554 666677777777777777655555
Q ss_pred ccc------cCCCCEEECcCCccc--CCCcccccCCCCCCEEECcCCc
Q 007762 487 VDG------LSQLSHLILGHNNLE--GEVPVQLCKLNQLQLLDLSNNN 526 (590)
Q Consensus 487 ~~~------l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 526 (590)
|.. ...|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 543 355677777777766 4556667777777777777764
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.2e-30 Score=253.36 Aligned_cols=252 Identities=31% Similarity=0.442 Sum_probs=205.2
Q ss_pred CcccEEEccCCcCCC--CCchhhhhcCCCCcEEEccC-ceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCC
Q 007762 249 KRLRLLDISNNNFRG--HIPVEIGDVLPGLFSLNISM-NALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNL 325 (590)
Q Consensus 249 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 325 (590)
.+++.|+++++.+++ .+|..+.. +++|++|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..+. .+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCC
Confidence 467888888888877 67777765 78888888884 777777888888888888888888888767776654 48888
Q ss_pred cEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCC-CCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762 326 EYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCF-VLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404 (590)
Q Consensus 326 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 404 (590)
++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ .|+.|++++|.+++.+|..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 8888888888877777888888888888888888877888888887 888888888888888888888776 88888888
Q ss_pred CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc
Q 007762 405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS 484 (590)
Q Consensus 405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 484 (590)
|.+.+..+..|..+++|++|++++|.+++.+ +. +..+++|++|++++|.+++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------------------~~--~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-----------------------GK--VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBG-----------------------GG--CCCCTTCCEEECCSSCCEECCC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeec-----------------------Cc--ccccCCCCEEECcCCcccCcCC
Confidence 8888778888888888888888888776322 22 4556788999999999988888
Q ss_pred ccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCc-cCC
Q 007762 485 DWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNN-LHG 529 (590)
Q Consensus 485 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~ 529 (590)
.++..+++|++|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 88988999999999999998888876 788899999999998 444
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.2e-29 Score=245.26 Aligned_cols=290 Identities=21% Similarity=0.207 Sum_probs=147.7
Q ss_pred cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEE
Q 007762 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280 (590)
Q Consensus 201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 280 (590)
+++.++++++.+. .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence 4566666666554 444322 245555555555555544444555555555555555555333333333 45555555
Q ss_pred ccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccc
Q 007762 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV 360 (590)
Q Consensus 281 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 360 (590)
+++|.++ .+|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.. .
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~ 160 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS----------------------S 160 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCG----------------------G
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCc----------------------c
Confidence 5555554 3333322 45555555555554 3333333345555555555554432 0
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-
Q 007762 361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF- 439 (590)
Q Consensus 361 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 439 (590)
+..+..+..+++|++|++++|.++. ++..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred CcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 1223334444444444444444442 222221 455555555555554444455555555555555555544333222
Q ss_pred CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccc------cCCCCEEECcCCcccC--CCcccc
Q 007762 440 HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG------LSQLSHLILGHNNLEG--EVPVQL 511 (590)
Q Consensus 440 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~--~~~~~~ 511 (590)
.+++|++|++++|.+. .+|.. +..+++|+.|++++|.+++..+..|.. ...++.|++++|++.. ..|..|
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 2344555555555442 44444 566677777777777777655555532 3567777777777653 445667
Q ss_pred cCCCCCCEEECcCCc
Q 007762 512 CKLNQLQLLDLSNNN 526 (590)
Q Consensus 512 ~~l~~L~~L~l~~n~ 526 (590)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 777778888877774
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-33 Score=293.60 Aligned_cols=337 Identities=18% Similarity=0.126 Sum_probs=206.2
Q ss_pred CChhccCCCcccEEEcCCCcCccccchHHhhcCC----CCcEEEccCCCCCC----CCcCCCCCCCcccEEEccCCcCCC
Q 007762 192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNT----NLESLFLVNDSLAG----PFRLPIHSHKRLRLLDISNNNFRG 263 (590)
Q Consensus 192 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~ 263 (590)
++..+..+++|++|++++|.+.+..+..++..++ +|++|++++|.+.. .++..+..+++|++|++++|.+++
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 3455666778888888888776655655556666 68888888887774 235566778888888888888764
Q ss_pred CCchhhhhc----CCCCcEEEccCceeccc----CCcccCCCCCCcEEEccCcccccccchhhh----cCCCCCcEEEcc
Q 007762 264 HIPVEIGDV----LPGLFSLNISMNALDGS----IPSSFGNMKFLQLLDVTNNQLTGEIPEHLA----VGCVNLEYLALS 331 (590)
Q Consensus 264 ~~~~~~~~~----~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~ 331 (590)
..+..+... .++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ...++|++|+++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 444443322 34688888888877752 355566678888888888887643333222 235578888888
Q ss_pred CCcCCCc----cCccccCccccCceeccCccccccC-----CccccCCCCCCEEEccCCccccc----CccccCCCCCcc
Q 007762 332 NNSLEGH----MFSRNFNLTNLKWLQLEGNHFVGEI-----PQSLSKCFVLEGLFLNNNSLSGM----IPRWLGNLTRLQ 398 (590)
Q Consensus 332 ~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~ 398 (590)
+|.+.+. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|+
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 8877653 3444556777888888877765432 22233567788888888877653 345566677788
Q ss_pred EEECCCCcCcCCCCcccC-----CCCCCcEEEcccCcCCCCCCCCC-----CCCcccEEECcCccCCCCCCccccc----
Q 007762 399 HIMMPKNHLEGPIPVEFC-----QLDWLQILDISDNNISGSLPSCF-----HPLSIEHVHLSKNMLHGQLKRGTFF---- 464 (590)
Q Consensus 399 ~L~L~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~---- 464 (590)
+|++++|.+.+..+..+. ..++|++|++++|.+++.....+ ..++|++|++++|.+.+..+.. +.
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~ 366 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE-LCQGLG 366 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH-HHHHHT
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH-HHHHHc
Confidence 888887776543332222 23577777777777664321111 1356666666666553221111 11
Q ss_pred -cCCCCcEEEcCCCcCCC----CccccccccCCCCEEECcCCcccCCCccccc-----CCCCCCEEECcCCccCC
Q 007762 465 -NYHSLVTLDLSYNRLNG----SISDWVDGLSQLSHLILGHNNLEGEVPVQLC-----KLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 465 -~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~ 529 (590)
..++|+.|++++|.+++ .++..+..+++|++|++++|++++.....+. ....|+.|++.++.+..
T Consensus 367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 14566666666666664 4555566666666666666666543211111 12346666666655543
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.3e-28 Score=243.53 Aligned_cols=288 Identities=19% Similarity=0.218 Sum_probs=191.6
Q ss_pred cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEE
Q 007762 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280 (590)
Q Consensus 201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 280 (590)
+++.++++++.+. .+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEE
Confidence 4666677666665 555433 356777777777766655556667777777777777776444444443 66777777
Q ss_pred ccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCC--ccCccccCccccCceeccCcc
Q 007762 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEG--HMFSRNFNLTNLKWLQLEGNH 358 (590)
Q Consensus 281 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~~~ 358 (590)
+++|.++ .+|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.. ..+..+..+ +|++|++++|.
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 7777766 4454443 56777777777776 5555555567777777777777642 445555555 77777777777
Q ss_pred ccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCC
Q 007762 359 FVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC 438 (590)
Q Consensus 359 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 438 (590)
+.+ +|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++......
T Consensus 184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l 260 (332)
T 2ft3_A 184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260 (332)
T ss_dssp CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTG
T ss_pred CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhh
Confidence 763 443332 57777777777777666667777777777777777777666666777777777777777777443334
Q ss_pred CCCCcccEEECcCccCCCCCCcccccc------CCCCcEEEcCCCcCC--CCccccccccCCCCEEECcCCc
Q 007762 439 FHPLSIEHVHLSKNMLHGQLKRGTFFN------YHSLVTLDLSYNRLN--GSISDWVDGLSQLSHLILGHNN 502 (590)
Q Consensus 439 ~~~~~L~~L~l~~n~~~~~~~~~~~~~------~~~L~~L~ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~ 502 (590)
..+++|+.|++++|.++ .++...|.. .++|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 44677777777777774 444443433 467899999999987 5778889999999999999885
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.6e-33 Score=289.10 Aligned_cols=367 Identities=20% Similarity=0.194 Sum_probs=208.9
Q ss_pred CCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccc-cCC
Q 007762 19 KSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCM-ANM 97 (590)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~-~~l 97 (590)
++|++|+++++ .+.......++..+++|++|++++|.+++.+....+..+..+++|++|++++|.+.+..+..+ ..+
T Consensus 3 ~~l~~L~Ls~~--~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCE--ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESC--CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhc--ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 57889999999 555544455444889999999999988642222334667888999999999998875434333 234
Q ss_pred C----CCcEEEcccccccc----ccCCCCccCCCCCcEEECcCCccccccCcc----ccccCCCccEEEccCCccccccc
Q 007762 98 T----SLRILYVSSNQLTG----SISSSPLVHLTSIEELHLSNNHFQIPISLE----PLFNHSRLKVFWAKNNEINAEIT 165 (590)
Q Consensus 98 ~----~L~~L~ls~n~l~~----~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~----~l~~l~~L~~l~l~~~~~~~~~~ 165 (590)
+ +|++|++++|.++. .++. .+..+++|++|++++|.+....... .....++|+.|++++|.+.....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 4 69999999998873 3344 5778889999999998876321111 12224567777776665443211
Q ss_pred CCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhh----cCCCCcEEEccCCCCCCC-
Q 007762 166 QSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLE----NNTNLESLFLVNDSLAGP- 240 (590)
Q Consensus 166 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~- 240 (590)
. .++..+..+++|++|++++|.+.+..+..+.. ..++|+.|++++|.+.+.
T Consensus 160 ~------------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 160 E------------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp H------------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred H------------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 0 13445566778888888888776544443322 345777777777776653
Q ss_pred ---CcCCCCCCCcccEEEccCCcCCCCCch----hhhhcCCCCcEEEccCceeccc----CCcccCCCCCCcEEEccCcc
Q 007762 241 ---FRLPIHSHKRLRLLDISNNNFRGHIPV----EIGDVLPGLFSLNISMNALDGS----IPSSFGNMKFLQLLDVTNNQ 309 (590)
Q Consensus 241 ---~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~ 309 (590)
++..+..+++|+.|++++|.+++.... .+...+++|++|++++|.++.. ++..+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 233344566777777777766532221 1111245666666666666532 44445556666666666666
Q ss_pred cccccchhhh----cCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc
Q 007762 310 LTGEIPEHLA----VGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 385 (590)
Q Consensus 310 ~~~~~~~~~~----~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 385 (590)
+.+..+..+. ...++|++|++++|.+.+..... ++..+..+++|++|++++|.+++
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH--------------------FSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH--------------------HHHHHHHCSSCCEEECCSSBCHH
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH--------------------HHHHHhhCCCccEEEccCCcccc
Confidence 5432222211 11245555555555554321100 12233344455555555554443
Q ss_pred cCccccC----C-CCCccEEECCCCcCcC----CCCcccCCCCCCcEEEcccCcCC
Q 007762 386 MIPRWLG----N-LTRLQHIMMPKNHLEG----PIPVEFCQLDWLQILDISDNNIS 432 (590)
Q Consensus 386 ~~~~~~~----~-l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~ 432 (590)
..+..+. . .++|++|++++|.+.+ .++..+..+++|++|++++|.++
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 3222111 1 3455555555555543 33444445555555555555554
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1e-27 Score=236.95 Aligned_cols=278 Identities=20% Similarity=0.241 Sum_probs=184.3
Q ss_pred CcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEE
Q 007762 249 KRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYL 328 (590)
Q Consensus 249 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 328 (590)
.+++.++++++.++ .+|..+ .++++.|++++|.+++..+..++.+++|++|++++|.+.+..|..+ ..+++|++|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEE
Confidence 36777777777776 556543 3577777777777776555567777777777777777763334333 357777777
Q ss_pred EccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc--cCccccCCCCCccEEECCCCc
Q 007762 329 ALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG--MIPRWLGNLTRLQHIMMPKNH 406 (590)
Q Consensus 329 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~ 406 (590)
++++|.+.. ++..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus 106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 777777664 333322 577777777777776555667777888888888877753 455667777788888888877
Q ss_pred CcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccc
Q 007762 407 LEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD 485 (590)
Q Consensus 407 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 485 (590)
+.. +|..+. ++|++|++++|.+++..+..+. +++|++|++++|.+.+ ++...+..+++|+.|++++|.++ .+|.
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 763 444332 6777777777777766554443 5677777777777743 33333667777777777777777 5666
Q ss_pred cccccCCCCEEECcCCcccCCCcccccC------CCCCCEEECcCCccCC--CCccccccCC
Q 007762 486 WVDGLSQLSHLILGHNNLEGEVPVQLCK------LNQLQLLDLSNNNLHG--PIPPCFDNTT 539 (590)
Q Consensus 486 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~p~~~~~l~ 539 (590)
++..+++|++|++++|++++..+..|.. .+.|+.|++++|++.. ..|..|..+.
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 6777777777777777777555555533 2567777777777753 3445555443
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.4e-30 Score=277.38 Aligned_cols=439 Identities=13% Similarity=0.041 Sum_probs=240.8
Q ss_pred cchHhhhcCCCCcEEecCCCCCCCCCCCCC-----------cccccCCCCCcEEEeecccccccCCccccC-CCC-CcEE
Q 007762 37 FLQIISESMPSLKYLSLSDSTLGTNSSKIL-----------DRGLCSLVHLQELYIYNNDLRGSLPWCMAN-MTS-LRIL 103 (590)
Q Consensus 37 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-----------~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L 103 (590)
.+..+..++++|++|+++++......-.++ ......+++|++|+|++|.+++..+..+.. ++. |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 344444467778888877653210000011 011125777888888887776555555544 334 8888
Q ss_pred Eccccc-ccc-ccCCCCccCCCCCcEEECcCCccccccC---ccccccCCCccEEEccCCcccccccCCCCCCCCCcccc
Q 007762 104 YVSSNQ-LTG-SISSSPLVHLTSIEELHLSNNHFQIPIS---LEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLS 178 (590)
Q Consensus 104 ~ls~n~-l~~-~~~~~~l~~l~~L~~L~ls~n~~~~~~~---~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~ 178 (590)
++++|. +.. .++. ...++++|++|++++|.+.+... ......+++|+.|++++|.+....
T Consensus 144 ~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~-------------- 208 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS-------------- 208 (592)
T ss_dssp EEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC--------------
T ss_pred ECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC--------------
Confidence 887775 221 1111 23467788888888877653211 123356677777777666543110
Q ss_pred eEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCC---CCCcCCCCCCCcccEEE
Q 007762 179 RLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLA---GPFRLPIHSHKRLRLLD 255 (590)
Q Consensus 179 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~ 255 (590)
...++..+..+++|++|++++|.+. .++.. +..+++|+.|.++..... ......+..+++|+.++
T Consensus 209 ----------~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 276 (592)
T 3ogk_B 209 ----------PKDLETIARNCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276 (592)
T ss_dssp ----------HHHHHHHHHHCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred ----------HHHHHHHHhhCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence 0124455667889999999998876 35544 578899999999754322 22334566778888888
Q ss_pred ccCCcCCCCCchhhhhcCCCCcEEEccCceecccCC-cccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccC--
Q 007762 256 ISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIP-SSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSN-- 332 (590)
Q Consensus 256 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-- 332 (590)
++++... .++..+.. +++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++
T Consensus 277 l~~~~~~-~l~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 277 LSYMGPN-EMPILFPF-AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp ETTCCTT-TGGGGGGG-GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCC
T ss_pred ccccchh-HHHHHHhh-cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCc
Confidence 8876433 45554433 7788888888888654322 345778888888888 4443333334444577888888873
Q ss_pred ---------CcCCCccC-ccccCccccCceeccCccccccCCccccC-CCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762 333 ---------NSLEGHMF-SRNFNLTNLKWLQLEGNHFVGEIPQSLSK-CFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM 401 (590)
Q Consensus 333 ---------n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 401 (590)
+.+++... .....+++|++|+++.+.+++.....+.. +++|+.|+++++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~------------------- 414 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD------------------- 414 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS-------------------
T ss_pred cccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC-------------------
Confidence 33332111 11223455555555444444333222222 4445555443110
Q ss_pred CCCCcCcCC-----CCcccCCCCCCcEEEcccCc--CCCCCCCCC--CCCcccEEECcCccCCCCCCccccccCCCCcEE
Q 007762 402 MPKNHLEGP-----IPVEFCQLDWLQILDISDNN--ISGSLPSCF--HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTL 472 (590)
Q Consensus 402 L~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 472 (590)
..+.+++. ++..+..+++|++|++++|. +++.....+ .+++|++|++++|.+++......+.++++|+.|
T Consensus 415 -~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 415 -REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp -CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred -CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 12233321 11223345555555554432 221111110 134455555555554332222224667788888
Q ss_pred EcCCCcCCCC-ccccccccCCCCEEECcCCcccCCCccc-ccCCCCCCEEECcCC
Q 007762 473 DLSYNRLNGS-ISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNN 525 (590)
Q Consensus 473 ~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n 525 (590)
++++|.+++. ++..+..+++|++|++++|++++..... ...+|.+....+..+
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8888887643 3444566788888888888877553322 235666665555544
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=237.85 Aligned_cols=283 Identities=18% Similarity=0.179 Sum_probs=186.3
Q ss_pred cCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcE
Q 007762 223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQL 302 (590)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 302 (590)
.|+.....+.+++.++.. |..+ .++|++|++++|.++ .++......+++|++|++++|.+++..+..+..+++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 445555566666666643 2222 246777777777776 344322233677777777777777666666777777777
Q ss_pred EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccC-ccccCccccCceeccCcc-ccccCCccccCCCCCCEEEccC
Q 007762 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMF-SRNFNLTNLKWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNN 380 (590)
Q Consensus 303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~ 380 (590)
|++++|.+. .++...+..+++|++|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|+.|++++
T Consensus 105 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 777777776 5665555557777777777777765433 356667777777777763 4444455666667777777777
Q ss_pred CcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCc
Q 007762 381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKR 460 (590)
Q Consensus 381 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 460 (590)
|.+++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+.
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-------------------- 243 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS-------------------- 243 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------------------
Confidence 776666666666677777777777766532222334466667777766666543322110
Q ss_pred cccccCCCCcEEEcCCCcCCC----CccccccccCCCCEEECcCCcccCCCccc-ccCCCCCCEEECcCCccCCCCc
Q 007762 461 GTFFNYHSLVTLDLSYNRLNG----SISDWVDGLSQLSHLILGHNNLEGEVPVQ-LCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 461 ~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p 532 (590)
.....+.++.++++++.+++ .+|.++..+++|++|++++|+++ .+|.. |..+++|+.|++++|++.+..|
T Consensus 244 -~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 244 -TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 02234567888888888775 46778899999999999999999 55655 5899999999999999998665
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.4e-27 Score=228.66 Aligned_cols=248 Identities=21% Similarity=0.229 Sum_probs=156.2
Q ss_pred cEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccc--cchhhhcCCCCCcEEE
Q 007762 252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE--IPEHLAVGCVNLEYLA 329 (590)
Q Consensus 252 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~ 329 (590)
+.++.+++.++ .+|..+ .+++++|++++|.++...+..+..+++|++|++++|.+... .+.... .+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEE
Confidence 45677777666 566543 35777788877777744444567777888888887777621 133333 467777777
Q ss_pred ccCCcCCCccCccccCccccCceeccCccccccCC-ccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCc
Q 007762 330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIP-QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLE 408 (590)
Q Consensus 330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~ 408 (590)
+++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 77777664 34446667777777777777764433 45666777777777777776666666677777777777777766
Q ss_pred C-CCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc
Q 007762 409 G-PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV 487 (590)
Q Consensus 409 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 487 (590)
+ ..|..+..+++|++|++++|.+++..+.. +..+++|+.|++++|.+++..+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------------------------~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTA------------------------FNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTT------------------------TTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHH------------------------hcCCCCCCEEECCCCccCccChhhc
Confidence 4 35666666677777777776665433322 4445556666666665555444455
Q ss_pred cccCCCCEEECcCCcccCCCcccccCCC-CCCEEECcCCccCC
Q 007762 488 DGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNNLHG 529 (590)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 529 (590)
..+++|++|++++|++++..|..+..++ +|+.|++++|++++
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 5556666666666666555555555553 56666666666554
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.2e-26 Score=224.90 Aligned_cols=249 Identities=22% Similarity=0.206 Sum_probs=155.0
Q ss_pred EEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCc
Q 007762 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGN 357 (590)
Q Consensus 278 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 357 (590)
.++.+++.++ .+|..+. ++|++|++++|.+. .+|...+..+++|++|++++|.+....
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~------------------ 68 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKG------------------ 68 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEE------------------
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCccc------------------
Confidence 4455555444 3443332 35555555555554 444444444555555555555544211
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCC
Q 007762 358 HFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLP 436 (590)
Q Consensus 358 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 436 (590)
..+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+
T Consensus 69 ----~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 69 ----CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp ----EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred ----CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 11223334455555555555544 233334455555555555555543332 345555555555555555554444
Q ss_pred CCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCC
Q 007762 437 SCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN 515 (590)
Q Consensus 437 ~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 515 (590)
..+. +++|++|++++|.+.+...+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 4332 455666666666554422233388899999999999999988889999999999999999999977777899999
Q ss_pred CCCEEECcCCccCCCCccccccCC-ccccccCCCCCCCc
Q 007762 516 QLQLLDLSNNNLHGPIPPCFDNTT-LHESYSNSSSPNKQ 553 (590)
Q Consensus 516 ~L~~L~l~~n~l~~~~p~~~~~l~-~~~~~~~~~~~~~~ 553 (590)
+|+.|++++|++++..|..+..+. .+...+...++..+
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 999999999999999998888773 55666666666543
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.2e-29 Score=268.69 Aligned_cols=426 Identities=15% Similarity=0.069 Sum_probs=280.9
Q ss_pred CCCCCCCCCCCCeEeCcCCcC---------cccc---ccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccC-CCC-C
Q 007762 11 RGQGFPHFKSLELLDMECTRI---------ALNT---SFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCS-LVH-L 76 (590)
Q Consensus 11 ~~~~~~~~~~L~~L~l~~~~~---------~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~-l~~-L 76 (590)
|+..+.++++|+.|+++++.. .+.+ .....+...+++|++|+|++|.+++ ..+ ..+.. +++ |
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~---~~~-~~l~~~~~~~L 140 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD---LDL-DRLAKARADDL 140 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH---HHH-HHHHHHHGGGC
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH---HHH-HHHHHhccccC
Confidence 335678899999999988631 0011 1123334478999999999998765 222 33444 344 9
Q ss_pred cEEEeeccc-ccc-cCCccccCCCCCcEEEccccccccc----cCCCCccCCCCCcEEECcCCcccc---ccCccccccC
Q 007762 77 QELYIYNND-LRG-SLPWCMANMTSLRILYVSSNQLTGS----ISSSPLVHLTSIEELHLSNNHFQI---PISLEPLFNH 147 (590)
Q Consensus 77 ~~L~L~~n~-i~~-~~~~~~~~l~~L~~L~ls~n~l~~~----~~~~~l~~l~~L~~L~ls~n~~~~---~~~~~~l~~l 147 (590)
++|++++|. +.. .++.....+++|++|++++|.+++. ++. .+..+++|++|++++|.+.+ ..-...+.++
T Consensus 141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 999999886 221 2233345789999999999987633 222 34568899999999988751 1112345678
Q ss_pred CCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCC---CcCChhccCCCcccEEEcCCCcCccccchHHhhcC
Q 007762 148 SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDG---VIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENN 224 (590)
Q Consensus 148 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l 224 (590)
++|+.|++++|.+...... .....+|+.|+++. .... ...+..+..+++|+.++++++... .++.. +..+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~----~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~-~~~~ 292 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGF----FKAAANLEEFCGGS-LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPIL-FPFA 292 (592)
T ss_dssp TTCCEEECSSCBGGGGHHH----HHHCTTCCEEEECB-CCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGG-GGGG
T ss_pred CCCcEEeccCccHHHHHHH----HhhhhHHHhhcccc-cccccchHHHHHHhhccccccccCccccchh-HHHHH-Hhhc
Confidence 9999999999876542211 11223788888842 2221 234456677889999999886432 45544 4788
Q ss_pred CCCcEEEccCCCCCCCCc-CCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccC-----------ceeccc-CC
Q 007762 225 TNLESLFLVNDSLAGPFR-LPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISM-----------NALDGS-IP 291 (590)
Q Consensus 225 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~~~~~-~~ 291 (590)
++|++|++++|.+.+... ..+..+++|+.|+++ +.+.+.....+...+++|++|++++ +.+++. ++
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 999999999988654332 224678899999998 4444344444545588999999983 455432 22
Q ss_pred cccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEcc----CCcCCCc-----cCccccCccccCceeccCcc--cc
Q 007762 292 SSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS----NNSLEGH-----MFSRNFNLTNLKWLQLEGNH--FV 360 (590)
Q Consensus 292 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~i~~~-----~~~~~~~l~~L~~L~l~~~~--~~ 360 (590)
.....+++|++|+++.+.+++..+..+...+++|+.|+++ .+.+++. ++..+..+++|++|++++|. ++
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 2344578999999988888866666666568899999996 5556543 22235568899999997544 44
Q ss_pred ccCCccc-cCCCCCCEEEccCCccccc-CccccCCCCCccEEECCCCcCcCC-CCcccCCCCCCcEEEcccCcCCCCCCC
Q 007762 361 GEIPQSL-SKCFVLEGLFLNNNSLSGM-IPRWLGNLTRLQHIMMPKNHLEGP-IPVEFCQLDWLQILDISDNNISGSLPS 437 (590)
Q Consensus 361 ~~~~~~l-~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 437 (590)
+.....+ ..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|++++....
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~ 531 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence 3333223 3478899999999988753 344567889999999999987643 233345788999999999998765433
Q ss_pred CC--CCCcccEEEC
Q 007762 438 CF--HPLSIEHVHL 449 (590)
Q Consensus 438 ~~--~~~~L~~L~l 449 (590)
.+ .++.+....+
T Consensus 532 ~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 532 LMQMARPYWNIELI 545 (592)
T ss_dssp GGGGCCTTEEEEEE
T ss_pred HHHHhCCCcEEEEe
Confidence 33 2444444333
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.8e-26 Score=235.81 Aligned_cols=249 Identities=21% Similarity=0.228 Sum_probs=214.9
Q ss_pred CCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceec
Q 007762 275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL 354 (590)
Q Consensus 275 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 354 (590)
....++..+..++ .+|..+. +.+++|++++|.+. .++...+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4567888888887 6777665 68999999999998 666555667999999999999999888888999999999999
Q ss_pred cCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCc-CcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762 355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH-LEGPIPVEFCQLDWLQILDISDNNISG 433 (590)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~ 433 (590)
++|.+....+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..|..+++|++|++++|.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 9999997666789999999999999999998777789999999999999955 44344557899999999999999998
Q ss_pred CCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccC
Q 007762 434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK 513 (590)
Q Consensus 434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 513 (590)
.+|....+++|+.|++++|.+++ ++...|.++++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred cccccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 45666678899999999999954 54455999999999999999999888889999999999999999999777778899
Q ss_pred CCCCCEEECcCCccCC
Q 007762 514 LNQLQLLDLSNNNLHG 529 (590)
Q Consensus 514 l~~L~~L~l~~n~l~~ 529 (590)
+++|+.|++++|++.-
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 9999999999999863
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.4e-26 Score=226.04 Aligned_cols=235 Identities=20% Similarity=0.207 Sum_probs=155.3
Q ss_pred CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCce
Q 007762 273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL 352 (590)
Q Consensus 273 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 352 (590)
.+.++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+. .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 467888888888877 66777777778888888888777 6766554 4777777777777776 456666677777777
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762 353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432 (590)
Q Consensus 353 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 432 (590)
++++|.+.+.+|..+... .....+..+++|++|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 777766665555544320 01112334556666666666555 45555556666666666666655
Q ss_pred CCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCccccc
Q 007762 433 GSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLC 512 (590)
Q Consensus 433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 512 (590)
+..+....+++|++|++++|.+.+.++.. +..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 43333333455555555555554555554 66777788888888777777777788888888888888887778888888
Q ss_pred CCCCCCEEECcCCccC
Q 007762 513 KLNQLQLLDLSNNNLH 528 (590)
Q Consensus 513 ~l~~L~~L~l~~n~l~ 528 (590)
.+++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 8888888877776554
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.5e-26 Score=235.97 Aligned_cols=249 Identities=22% Similarity=0.220 Sum_probs=213.3
Q ss_pred CCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceec
Q 007762 275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL 354 (590)
Q Consensus 275 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 354 (590)
....++.++..++ .+|..+. +++++|++++|.+. .++...+..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4567888888877 6776654 68999999999998 555455567999999999999999888888999999999999
Q ss_pred cCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCc-CcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762 355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNH-LEGPIPVEFCQLDWLQILDISDNNISG 433 (590)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~ 433 (590)
++|.+....+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..|..+++|++|++++|.+++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 9999997777789999999999999999997777789999999999999954 443344578999999999999999985
Q ss_pred CCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccC
Q 007762 434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK 513 (590)
Q Consensus 434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 513 (590)
++....+++|+.|++++|.+.+ +++..|.++++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..
T Consensus 211 -~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 -MPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -CCCCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -cccccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4666678899999999999964 44455999999999999999999888888999999999999999999777777889
Q ss_pred CCCCCEEECcCCccCC
Q 007762 514 LNQLQLLDLSNNNLHG 529 (590)
Q Consensus 514 l~~L~~L~l~~n~l~~ 529 (590)
+++|+.|++++|++..
T Consensus 289 l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEccCCCcCC
Confidence 9999999999999874
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=8.5e-26 Score=232.24 Aligned_cols=248 Identities=24% Similarity=0.287 Sum_probs=218.2
Q ss_pred cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEE
Q 007762 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLA 329 (590)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 329 (590)
..+.++.++..++ .+|..+ .++++.|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 4568889998887 788766 469999999999999888889999999999999999998 66666667799999999
Q ss_pred ccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCC-cccccCccccCCCCCccEEECCCCcCc
Q 007762 330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN-SLSGMIPRWLGNLTRLQHIMMPKNHLE 408 (590)
Q Consensus 330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~~~ 408 (590)
+++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+....+..|..+++|+.|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 9999999877778999999999999999999777778999999999999995 455445557999999999999999998
Q ss_pred CCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc
Q 007762 409 GPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV 487 (590)
Q Consensus 409 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 487 (590)
.+| .+..+++|+.|++++|.+++..+..+. +++|+.|++++|.+. .++...|..+++|+.|+|++|++++..+..|
T Consensus 199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 445 488999999999999999988777665 789999999999995 5555569999999999999999998888889
Q ss_pred cccCCCCEEECcCCcccC
Q 007762 488 DGLSQLSHLILGHNNLEG 505 (590)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~ 505 (590)
..+++|+.|++++|++..
T Consensus 276 ~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp SSCTTCCEEECCSSCEEC
T ss_pred ccccCCCEEEcCCCCccC
Confidence 999999999999999863
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.8e-26 Score=232.66 Aligned_cols=248 Identities=21% Similarity=0.228 Sum_probs=216.7
Q ss_pred cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEE
Q 007762 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLA 329 (590)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 329 (590)
..+.++.++..++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence 4567888888887 788655 469999999999999888899999999999999999998 66655566799999999
Q ss_pred ccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCC-cccccCccccCCCCCccEEECCCCcCc
Q 007762 330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNN-SLSGMIPRWLGNLTRLQHIMMPKNHLE 408 (590)
Q Consensus 330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~~~ 408 (590)
+++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.+.
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 9999999887888999999999999999999777778999999999999995 455444557899999999999999998
Q ss_pred CCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc
Q 007762 409 GPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV 487 (590)
Q Consensus 409 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 487 (590)
+. | .+..+++|+.|++++|.+++..+..+. +++|+.|++++|.+. .++...|..+++|+.|+|++|.+++..+..|
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 53 4 588899999999999999988777654 789999999999996 4555559999999999999999998888889
Q ss_pred cccCCCCEEECcCCcccC
Q 007762 488 DGLSQLSHLILGHNNLEG 505 (590)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~ 505 (590)
..+++|++|++++|++..
T Consensus 287 ~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred ccccCCCEEEccCCCcCC
Confidence 999999999999999873
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.5e-25 Score=236.90 Aligned_cols=268 Identities=25% Similarity=0.255 Sum_probs=185.0
Q ss_pred CCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEc
Q 007762 226 NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV 305 (590)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 305 (590)
+++.|+++++.+.. +|..+. ++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 45555555555553 222222 56666666666665 4444 2556666666666665 3443 4566667777
Q ss_pred cCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc
Q 007762 306 TNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 385 (590)
Q Consensus 306 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 385 (590)
++|.+. .+|. .+++|+.|++++|.+... |. .+++|++|++++|.+.+ +|. .+++|+.|++++|.+++
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 766666 4444 256677777777766652 22 23677777777777663 332 24567788888887774
Q ss_pred cCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCcccccc
Q 007762 386 MIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFN 465 (590)
Q Consensus 386 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 465 (590)
++ ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.. +.. +++|+.|++++|.++ .++ ..
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~~~--~~~L~~L~Ls~N~L~-~lp----~~ 239 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL-PAL--PSGLKELIVSGNRLT-SLP----VL 239 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-CCC--CTTCCEEECCSSCCS-CCC----CC
T ss_pred -Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc-CCC--CCCCCEEEccCCccC-cCC----CC
Confidence 33 446778888888888774 343 246788888888888743 332 478888888888885 455 34
Q ss_pred CCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC
Q 007762 466 YHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539 (590)
Q Consensus 466 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 539 (590)
+++|+.|++++|.++ .+|. .+++|++|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 578999999999998 4555 5689999999999999 7888999999999999999999999998888765
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=230.18 Aligned_cols=285 Identities=18% Similarity=0.184 Sum_probs=226.4
Q ss_pred CCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCc
Q 007762 198 HQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLF 277 (590)
Q Consensus 198 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 277 (590)
.|+.....+.+++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.. +++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCC
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCC
Confidence 3455566889998887 788754 369999999999999877778999999999999999998544555554 89999
Q ss_pred EEEccCceecccCCcccCCCCCCcEEEccCcccccccch-hhhcCCCCCcEEEccCC-cCCCccCccccCccccCceecc
Q 007762 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPE-HLAVGCVNLEYLALSNN-SLEGHMFSRNFNLTNLKWLQLE 355 (590)
Q Consensus 278 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~ 355 (590)
+|++++|.+++..+..++.+++|++|++++|.+. .++. ..+..+++|++|++++| .+....+..+..+++|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 9999999999655555899999999999999998 7776 55667999999999999 4666667788999999999999
Q ss_pred CccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccC---CCCCCcEEEcccCcCC
Q 007762 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC---QLDWLQILDISDNNIS 432 (590)
Q Consensus 356 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~l~~n~l~ 432 (590)
+|.+.+..+..+..+++|++|++++|.++......+..+++|+.|++++|.+.+..+..+. ....++.++++++.+.
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 9999988889999999999999999998754444456689999999999999865544332 2445555555555443
Q ss_pred CCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCc
Q 007762 433 GSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP 508 (590)
Q Consensus 433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 508 (590)
++.+ ..++.. +..+++|+.|++++|.++...+..|..+++|++|++++|++++..|
T Consensus 263 ------------------~~~l-~~l~~~-l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 263 ------------------DESL-FQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ------------------HHHH-HHHHHH-HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ------------------Ccch-hhhHHH-HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1222 134444 7788999999999999995444446889999999999999986543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.6e-25 Score=216.30 Aligned_cols=226 Identities=24% Similarity=0.220 Sum_probs=144.2
Q ss_pred cEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccC
Q 007762 301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 380 (590)
Q Consensus 301 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 380 (590)
++++.+++.+. .+|... .+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34455555554 444332 34555555555555554445555556666666666655555455556666666666666
Q ss_pred Cc-ccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEECcCccCCCCC
Q 007762 381 NS-LSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQL 458 (590)
Q Consensus 381 n~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~ 458 (590)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|.++ .+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-cc
Confidence 65 554445556666666666666666665555556666666666666666665544433 2556666666666663 45
Q ss_pred CccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCC
Q 007762 459 KRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI 531 (590)
Q Consensus 459 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 531 (590)
+...+..+++|+.|++++|.+++..|.++..+++|++|++++|++++..+..+..+++|+.|++++|++....
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 5544777788888888888888777777888888888888888888666666788888888888888887543
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.6e-29 Score=269.61 Aligned_cols=444 Identities=13% Similarity=0.074 Sum_probs=216.0
Q ss_pred ccchHhhhcCCCCcEEecCCCCCCCCCCCCC------------cccccCCCCCcEEEeecccccccCCcccc-CCCCCcE
Q 007762 36 SFLQIISESMPSLKYLSLSDSTLGTNSSKIL------------DRGLCSLVHLQELYIYNNDLRGSLPWCMA-NMTSLRI 102 (590)
Q Consensus 36 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~------------~~~l~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~ 102 (590)
..+..+..++++|++|+++++..... ..+. ......+++|++|+|++|.+++..+..+. .+++|++
T Consensus 56 ~~~~~~~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 134 (594)
T 2p1m_B 56 VSPATVIRRFPKVRSVELKGKPHFAD-FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV 134 (594)
T ss_dssp SCHHHHHHHCTTCCEEEEECSCGGGG-GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCE
T ss_pred cCHHHHHhhCCCceEEeccCCCchhh-cccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcE
Confidence 34444444777788888777642110 0010 01123466777777777776654444443 5677777
Q ss_pred EEcccc-ccccc-cCCCCccCCCCCcEEECcCCccccccC--c-cccccCCCccEEEccCCcccccccCCCCCCCCCccc
Q 007762 103 LYVSSN-QLTGS-ISSSPLVHLTSIEELHLSNNHFQIPIS--L-EPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQL 177 (590)
Q Consensus 103 L~ls~n-~l~~~-~~~~~l~~l~~L~~L~ls~n~~~~~~~--~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L 177 (590)
|++++| .++.. ++. ...++++|++|++++|.+.+... . .....+++|+.|++++|. .
T Consensus 135 L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~---------------- 196 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S---------------- 196 (594)
T ss_dssp EEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S----------------
T ss_pred EeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C----------------
Confidence 777776 34321 222 23456777777777776542211 0 111244555555555443 0
Q ss_pred ceEeccCCCCCCC-cCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCC------CCcCCCCCCCc
Q 007762 178 SRLSLSSGYGDGV-IFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAG------PFRLPIHSHKR 250 (590)
Q Consensus 178 ~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~~~ 250 (590)
.+.. .++.....+++|++|++++|...+.++.. +..+++|+.|.+..+...- ..+..+..+++
T Consensus 197 ---------~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 197 ---------EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp ---------CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred ---------cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 0110 12222345678888888877332234443 4677888888776553210 01123455666
Q ss_pred ccEE-EccCCcCCCCCchhhhhcCCCCcEEEccCceeccc-CCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEE
Q 007762 251 LRLL-DISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGS-IPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYL 328 (590)
Q Consensus 251 L~~L-~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 328 (590)
|+.+ .+.+... +.++..+. .+++|++|++++|.+++. +...+..+++|++|++++| +.+.....+...+++|++|
T Consensus 267 L~~Ls~~~~~~~-~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 267 LRCLSGFWDAVP-AYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp CCEEECCBTCCG-GGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred cccccCCcccch-hhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 6666 3333221 12332222 256777777777665432 2223456667777777666 3322222233336666666
Q ss_pred EccCCcCCCccCccccCccccCceeccCccccccCCcc-ccCCCCCCEEEccCCcccccCccccC-CCCCccEEECC--C
Q 007762 329 ALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQS-LSKCFVLEGLFLNNNSLSGMIPRWLG-NLTRLQHIMMP--K 404 (590)
Q Consensus 329 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~--~ 404 (590)
++..+...+ ....+.+++..... ...+++|+.|.++.+.+++.....+. .+++|+.|+++ +
T Consensus 344 ~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 344 RVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp EEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 664321000 00001111100001 11244455554444444433222222 24455555554 1
Q ss_pred ----CcCcCC-----CCcccCCCCCCcEEEcccCcCCCCCCCCC--CCCcccEEECcCccCCCCCCccccccCCCCcEEE
Q 007762 405 ----NHLEGP-----IPVEFCQLDWLQILDISDNNISGSLPSCF--HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLD 473 (590)
Q Consensus 405 ----n~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 473 (590)
+.+++. ++..+..+++|+.|++++ .+++.....+ .+++|+.|++++|.+++.........+++|+.|+
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 222211 011133455566666544 3322111111 1445555666555553333322225678888888
Q ss_pred cCCCcCCCCccc-cccccCCCCEEECcCCcccCCCcccc-cCCCCCCEEECcCCcc
Q 007762 474 LSYNRLNGSISD-WVDGLSQLSHLILGHNNLEGEVPVQL-CKLNQLQLLDLSNNNL 527 (590)
Q Consensus 474 ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l 527 (590)
+++|.+++.... .+..+++|++|++++|+++......+ ..+|.|+...+..+.-
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 888888643332 34557888888888888754333333 4567776666665543
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.2e-26 Score=223.08 Aligned_cols=219 Identities=20% Similarity=0.232 Sum_probs=164.4
Q ss_pred CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762 323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM 402 (590)
Q Consensus 323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 402 (590)
+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 44555555555554 23444445555555555555555 45555555566666666666555 44555556666666666
Q ss_pred CCCcCcCCCCccc---------CCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEE
Q 007762 403 PKNHLEGPIPVEF---------CQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLD 473 (590)
Q Consensus 403 ~~n~~~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 473 (590)
++|.+.+.+|..+ ..+++|++|++++|.++........+++|++|++++|.+. .++.. +..+++|+.|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEEE
Confidence 6655555555544 4599999999999999844334445889999999999996 56665 89999999999
Q ss_pred cCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccC
Q 007762 474 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 546 (590)
Q Consensus 474 ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~ 546 (590)
+++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|+.+.+++.+.....
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999876554433
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.5e-25 Score=216.59 Aligned_cols=258 Identities=21% Similarity=0.209 Sum_probs=151.1
Q ss_pred cEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEcc
Q 007762 252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALS 331 (590)
Q Consensus 252 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 331 (590)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 45666666665 555433 346677777776666555555666666666666666665 3322223345556666665
Q ss_pred CCc-CCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCC
Q 007762 332 NNS-LEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGP 410 (590)
Q Consensus 332 ~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 410 (590)
+|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 554 4443344455555555555555555444444444445555555555544433333344444444444444444433
Q ss_pred CCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccc
Q 007762 411 IPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGL 490 (590)
Q Consensus 411 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 490 (590)
.+..|..+ ++|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..+..+..+
T Consensus 169 ~~~~~~~l-----------------------~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 169 PERAFRGL-----------------------HSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTC-----------------------TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHHHhcCc-----------------------cccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 33334444 45555555555553333333 7788899999999999998777788999
Q ss_pred CCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCC
Q 007762 491 SQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTT 539 (590)
Q Consensus 491 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 539 (590)
++|++|++++|++....+.. .....++.+..+.+.+....|+.+.+..
T Consensus 225 ~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~ 272 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD 272 (285)
T ss_dssp TTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCB
T ss_pred cccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcC
Confidence 99999999999988543321 1123345556777888878887776643
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-27 Score=232.65 Aligned_cols=267 Identities=18% Similarity=0.177 Sum_probs=172.7
Q ss_pred ccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEc
Q 007762 251 LRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLAL 330 (590)
Q Consensus 251 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 330 (590)
++..+++.+.+. ..+..+...+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 334444444443 3333333335566666666666665555566666666666666666653322 334666666666
Q ss_pred cCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCC
Q 007762 331 SNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGP 410 (590)
Q Consensus 331 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 410 (590)
++|.+.+.. ..++|++|++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 666655422 235667777777666544332 246677777777777766666677777777888877777765
Q ss_pred CCccc-CCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccc
Q 007762 411 IPVEF-CQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG 489 (590)
Q Consensus 411 ~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 489 (590)
.+..+ ..+++|++|++++|.+++. +....+++|++|++++|.++ .++.. +..+++|+.|++++|.++ .+|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCC-cchhh-hcccCcccEEECcCCccc-chhhHhhc
Confidence 55555 3677788888888877644 33334667777777777774 45555 777788888888888887 46667777
Q ss_pred cCCCCEEECcCCccc-CCCcccccCCCCCCEEECc-CCccCCCCcc
Q 007762 490 LSQLSHLILGHNNLE-GEVPVQLCKLNQLQLLDLS-NNNLHGPIPP 533 (590)
Q Consensus 490 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~-~n~l~~~~p~ 533 (590)
+++|++|++++|+++ +.+|..+..+++|+.++++ .+.+.+..|.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 888888888888887 6667777888888888887 3445554443
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.4e-29 Score=268.67 Aligned_cols=432 Identities=14% Similarity=0.104 Sum_probs=247.7
Q ss_pred cCCCCCCCCCCCCeEeCcCCcCcccccc--------------chHhhhcCCCCcEEecCCCCCCCCCCCCCccccc-CCC
Q 007762 10 LRGQGFPHFKSLELLDMECTRIALNTSF--------------LQIISESMPSLKYLSLSDSTLGTNSSKILDRGLC-SLV 74 (590)
Q Consensus 10 i~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~-~l~ 74 (590)
.|...+.++++|+.|+++++. ....+ ...+...+++|++|+|++|.+++ ..+ ..+. .++
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~--~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~---~~~-~~l~~~~~ 130 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKP--HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD---DCL-ELIAKSFK 130 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSC--GGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH---HHH-HHHHHHCT
T ss_pred CHHHHHhhCCCceEEeccCCC--chhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH---HHH-HHHHHhCC
Confidence 343457788999999999984 11111 12334478999999999998876 333 3454 689
Q ss_pred CCcEEEeecc-ccccc-CCccccCCCCCcEEEccccccccccCC---CCccCCCCCcEEECcCCc--cccccCccccccC
Q 007762 75 HLQELYIYNN-DLRGS-LPWCMANMTSLRILYVSSNQLTGSISS---SPLVHLTSIEELHLSNNH--FQIPISLEPLFNH 147 (590)
Q Consensus 75 ~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~---~~l~~l~~L~~L~ls~n~--~~~~~~~~~l~~l 147 (590)
+|++|++++| .+++. ++..+..+++|++|++++|.+++..+. .....+++|++|++++|. +...........+
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 9999999999 55432 445556899999999999987632211 133467899999999986 2211111223457
Q ss_pred CCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCc-------CccccchHH
Q 007762 148 SRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMK-------MNGEFPTWL 220 (590)
Q Consensus 148 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-------~~~~~~~~~ 220 (590)
++|+.|++++|... . .++..+..+++|++|+++.+. +. .++..
T Consensus 211 ~~L~~L~L~~~~~~---------------------------~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~- 260 (594)
T 2p1m_B 211 PNLKSLKLNRAVPL---------------------------E-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA- 260 (594)
T ss_dssp TTCCEEECCTTSCH---------------------------H-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH-
T ss_pred CCCcEEecCCCCcH---------------------------H-HHHHHHhcCCcceEcccccccCccchhhHH-HHHHH-
Confidence 88998888876211 1 134455666777777765442 22 23333
Q ss_pred hhcCCCCcEE-EccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecc-cCCcccCCCC
Q 007762 221 LENNTNLESL-FLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDG-SIPSSFGNMK 298 (590)
Q Consensus 221 ~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~ 298 (590)
+.++++|+.+ .+..... ...+..+..+++|+.|++++|.+++.....+...+++|++|++++| ++. .++.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 3677788777 3332221 1122223356778888888877654333343444778888888877 332 2222233467
Q ss_pred CCcEEEccC---------cccccccchhhhcCCCCCcEEEccCCcCCCccCcccc-CccccCceecc--C----cccccc
Q 007762 299 FLQLLDVTN---------NQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLE--G----NHFVGE 362 (590)
Q Consensus 299 ~L~~L~l~~---------n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~--~----~~~~~~ 362 (590)
+|++|++.+ +.+++.....+...+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++..
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 788887743 3344332333333477788877777766654333333 35667777776 2 222210
Q ss_pred -----CCccccCCCCCCEEEccCCcccccCccccCC-CCCccEEECCCCcCcCCCCccc-CCCCCCcEEEcccCcCCCCC
Q 007762 363 -----IPQSLSKCFVLEGLFLNNNSLSGMIPRWLGN-LTRLQHIMMPKNHLEGPIPVEF-CQLDWLQILDISDNNISGSL 435 (590)
Q Consensus 363 -----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~ 435 (590)
++..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n------ 491 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC------ 491 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC------
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC------
Confidence 111134455555555544 333322222222 4555555555555433222222 33444555555544
Q ss_pred CCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc-cccCCCCEEECcCCcc
Q 007762 436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNL 503 (590)
Q Consensus 436 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l 503 (590)
.+++......+..+++|+.|++++|.++......+ ..+++|+...+..+.-
T Consensus 492 -----------------~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 492 -----------------PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp -----------------SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred -----------------CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 44222222224557889999999998864433334 5567777766665543
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.1e-27 Score=228.60 Aligned_cols=248 Identities=23% Similarity=0.184 Sum_probs=142.7
Q ss_pred CCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceec-ccCCcccC-------CCCCCcEEEccCcccccccchhhh
Q 007762 248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALD-GSIPSSFG-------NMKFLQLLDVTNNQLTGEIPEHLA 319 (590)
Q Consensus 248 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~~ 319 (590)
.++|+.+++++|.+ .+|..+.. .++.|++++|.++ ..++..+. .+++|++|++++|.+.+.+|..++
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34555566666655 45555543 2566666666553 23333332 455566666666655555554432
Q ss_pred -cCCCCCcEEEccCCcCCCccCccccCc-----cccCceeccCccccccCCccccCCCCCCEEEccCCccccc--Cccc-
Q 007762 320 -VGCVNLEYLALSNNSLEGHMFSRNFNL-----TNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM--IPRW- 390 (590)
Q Consensus 320 -~~~~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~~~- 390 (590)
..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 3455555555555555544 4444333 5566666666666555555566666666666666665432 1122
Q ss_pred -cCCCCCccEEECCCCcCcCC--CC-cccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccC
Q 007762 391 -LGNLTRLQHIMMPKNHLEGP--IP-VEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNY 466 (590)
Q Consensus 391 -~~~l~~L~~L~L~~n~~~~~--~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 466 (590)
+..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.+++ ..+...+..+
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~~l 252 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-----------------------AAGAPSCDWP 252 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS-----------------------SCCCSCCCCC
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc-----------------------ccchhhhhhc
Confidence 25566666666666665521 11 223455666666666666553 3322224456
Q ss_pred CCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762 467 HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 467 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 77888888888877 5666555 7788888888888754 55 7778888888888888775
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=7.4e-24 Score=223.94 Aligned_cols=268 Identities=24% Similarity=0.298 Sum_probs=214.1
Q ss_pred cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEE
Q 007762 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280 (590)
Q Consensus 201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 280 (590)
+++.|+++++.+. .+|..+ .++|+.|++++|.+.... . .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l---~~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCC---CTTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhh---CCCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 5788999998887 777654 278999999999888533 2 5678999999999887 5665 378999999
Q ss_pred ccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccc
Q 007762 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV 360 (590)
Q Consensus 281 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 360 (590)
+++|.+++ +|. .+++|+.|++++|.++ .+|.. +++|++|++++|.+.+. +. .+++|+.|++++|.+.
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC
Confidence 99998884 554 5678999999999887 66653 58899999999988763 32 3578899999999988
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC
Q 007762 361 GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH 440 (590)
Q Consensus 361 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 440 (590)
+ +| ..+++|+.|++++|.+++ ++. ..++|+.|++++|.+.. +|. .+++|+.|++++|.+++. | ..
T Consensus 175 ~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p--~~ 239 (622)
T 3g06_A 175 S-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P--VL 239 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C--CC
T ss_pred C-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C--CC
Confidence 4 44 457889999999999885 333 34789999999999884 443 247899999999999863 4 33
Q ss_pred CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCC
Q 007762 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN 515 (590)
Q Consensus 441 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 515 (590)
+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 588999999999985 5665 4688999999999999 7788899999999999999999988888776554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=4e-26 Score=223.78 Aligned_cols=268 Identities=17% Similarity=0.174 Sum_probs=158.8
Q ss_pred cccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEE
Q 007762 201 DLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLN 280 (590)
Q Consensus 201 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 280 (590)
.++..+++.+.+. ..+..++..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+ +. .+++|++|+
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~-~l~~L~~L~ 86 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLD 86 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET-TCTTCCEEE
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh-hcCCCCEEE
Confidence 5666777777665 4444555666677777777777776655566667777777777776653332 22 256666666
Q ss_pred ccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCcccc
Q 007762 281 ISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFV 360 (590)
Q Consensus 281 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 360 (590)
+++|.+++. + ..++|++|++++|.+. .++.. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 87 Ls~n~l~~l-~----~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 87 LNNNYVQEL-L----VGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CCSSEEEEE-E----ECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred CcCCccccc-c----CCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 666666532 2 1256666666666665 33222 1445566666666555544444555555555555555554
Q ss_pred ccCCccc-cCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC
Q 007762 361 GEIPQSL-SKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF 439 (590)
Q Consensus 361 ~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 439 (590)
+..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++..+...
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------------------~-~~~~l~~L~~L~Ls~N~l~~l~~~~~ 211 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-------------------------K-GQVVFAKLKTLDLSSNKLAFMGPEFQ 211 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-------------------------E-CCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred cccHHHHhhccCcCCEEECCCCcCccc-------------------------c-cccccccCCEEECCCCcCCcchhhhc
Confidence 4333333 2344555555555544432 1 11224455555555555544433333
Q ss_pred CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC-CCccccccccCCCCEEECcCC-cccCCCcc
Q 007762 440 HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILGHN-NLEGEVPV 509 (590)
Q Consensus 440 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 509 (590)
.+++|+.|++++|.++ .++.. +..+++|+.|++++|.+. +.++.++..+++|+.|+++++ .+.+..|.
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccCcccEEECcCCccc-chhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 3455555555555553 45554 777889999999999998 778889999999999999955 55555443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.7e-25 Score=226.63 Aligned_cols=234 Identities=19% Similarity=0.173 Sum_probs=135.5
Q ss_pred CCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceec
Q 007762 275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL 354 (590)
Q Consensus 275 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 354 (590)
+|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 56666666666665555566666666666666666653333 3345666666666665554221 256666666
Q ss_pred cCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccC-CCCCCcEEEcccCcCCC
Q 007762 355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC-QLDWLQILDISDNNISG 433 (590)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~ 433 (590)
++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 66666543332 245667777777777666666666677777777777777665565554 56777777777777664
Q ss_pred CCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc-CCCccccc
Q 007762 434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE-GEVPVQLC 512 (590)
Q Consensus 434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 512 (590)
..+ ...+++|+.|++++|.++ .+++. +..+++|+.|++++|.+++ +|.++..+++|+.|++++|++. +.+|..+.
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~-~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCC-EECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc-cccCCCCCEEECCCCCCC-CCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 422 222455555555555553 23333 5555566666666666652 4445555556666666666555 34445555
Q ss_pred CCCCCCEEECc
Q 007762 513 KLNQLQLLDLS 523 (590)
Q Consensus 513 ~l~~L~~L~l~ 523 (590)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 55555555554
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.2e-25 Score=217.98 Aligned_cols=248 Identities=23% Similarity=0.234 Sum_probs=180.0
Q ss_pred cCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCC-CCCchhhh------hcCCCCcEEEccCceecccCCccc-
Q 007762 223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFR-GHIPVEIG------DVLPGLFSLNISMNALDGSIPSSF- 294 (590)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~------~~~~~L~~L~L~~n~~~~~~~~~l- 294 (590)
..++|+.+++++|.+ .++..+.. .|+.|++++|.+. ..++..+. ..+++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 445566666666665 23332222 2677777777763 34555443 127899999999999988888876
Q ss_pred -CCCCCCcEEEccCcccccccchhhhcCC-----CCCcEEEccCCcCCCccCccccCccccCceeccCcccccc--CCcc
Q 007762 295 -GNMKFLQLLDVTNNQLTGEIPEHLAVGC-----VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGE--IPQS 366 (590)
Q Consensus 295 -~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~ 366 (590)
..+++|++|++++|.+.+. |..+. .+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8899999999999999844 64443 23 8999999999999988888999999999999999997654 2333
Q ss_pred c--cCCCCCCEEEccCCccccc---CccccCCCCCccEEECCCCcCcCCCC-cccCCCCCCcEEEcccCcCCCCCCCCCC
Q 007762 367 L--SKCFVLEGLFLNNNSLSGM---IPRWLGNLTRLQHIMMPKNHLEGPIP-VEFCQLDWLQILDISDNNISGSLPSCFH 440 (590)
Q Consensus 367 l--~~~~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 440 (590)
+ ..+++|++|++++|.+++. ....+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~- 272 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL- 272 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC-
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc-
Confidence 3 7899999999999999832 22345678999999999999997764 45666788888888888887 333222
Q ss_pred CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 505 (590)
Q Consensus 441 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 505 (590)
. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 273 -----------------------~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 -----------------------P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -----------------------C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -----------------------c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 1 4567777777777644 44 6667777777777777663
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=4e-23 Score=198.44 Aligned_cols=207 Identities=23% Similarity=0.239 Sum_probs=123.7
Q ss_pred CCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECC
Q 007762 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403 (590)
Q Consensus 324 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 403 (590)
++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 44444444444444333344445555555555555444344444555555555555555554444455555555555555
Q ss_pred CCcCcCCCCcccCCCCCCcEEEcccCcCCCC-CCCCC-CCCcccEEECcCccCCCCCCccccccCCCCc----EEEcCCC
Q 007762 404 KNHLEGPIPVEFCQLDWLQILDISDNNISGS-LPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLV----TLDLSYN 477 (590)
Q Consensus 404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~----~L~ls~n 477 (590)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+ .+++|++|++++|.++ .++...+..+++|+ .|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhccccceeeecCCC
Confidence 5555544444455555555555555555432 23222 2455555555555553 33433466666666 8999999
Q ss_pred cCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762 478 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 478 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99866555554 4589999999999997666677899999999999999997654
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.2e-22 Score=194.10 Aligned_cols=204 Identities=25% Similarity=0.308 Sum_probs=127.0
Q ss_pred CcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEcc
Q 007762 300 LQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLN 379 (590)
Q Consensus 300 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 379 (590)
.+.++++++.++ .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 445555555554 444332 2345555555555554444445555555555555555553333444555555555555
Q ss_pred CCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCC
Q 007762 380 NNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLK 459 (590)
Q Consensus 380 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 459 (590)
+|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------~~~ 149 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ------------------------SLP 149 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------CCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC------------------------ccC
Confidence 55555444444555555555555555555444444555555555555555443 344
Q ss_pred ccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCC
Q 007762 460 RGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI 531 (590)
Q Consensus 460 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 531 (590)
...+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++...-
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 444777888999999999988777777888899999999999998666667888899999999999887543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.2e-24 Score=221.47 Aligned_cols=234 Identities=19% Similarity=0.192 Sum_probs=130.8
Q ss_pred CCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEc
Q 007762 226 NLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDV 305 (590)
Q Consensus 226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 305 (590)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+++..| +..+++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------------------l~~l~~L~~L~L 87 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---------------------------LESLSTLRTLDL 87 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---------------------------CTTCTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---------------------------cccCCCCCEEEe
Confidence 55555555555555444445555555555555555543222 444444444444
Q ss_pred cCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccc
Q 007762 306 TNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSG 385 (590)
Q Consensus 306 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 385 (590)
++|.+. .++. .++|+.|++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 88 s~N~l~-~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 88 NNNYVQ-ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CSSEEE-EEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred cCCcCC-CCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 444444 2221 24455555555544443222 23445555555555554444455555555555555555555
Q ss_pred cCccccC-CCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccc
Q 007762 386 MIPRWLG-NLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFF 464 (590)
Q Consensus 386 ~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 464 (590)
..+..+. .+++|+.|+|++|.+.+.. .+..+++|++|++++|.+++.++....+++|+.|++++|.++ .+|.. +.
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-l~ 234 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LR 234 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CC
T ss_pred cChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchh-hc
Confidence 4444443 4555666666666555331 222455666666666666655554444556666666666664 35555 67
Q ss_pred cCCCCcEEEcCCCcCC-CCccccccccCCCCEEECc
Q 007762 465 NYHSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILG 499 (590)
Q Consensus 465 ~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~L~ 499 (590)
.+++|+.|++++|.+. +.+|.++..++.|+.+++.
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7788999999999887 5677888888888888886
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.3e-22 Score=194.85 Aligned_cols=223 Identities=22% Similarity=0.269 Sum_probs=129.5
Q ss_pred EEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCC
Q 007762 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN 333 (590)
Q Consensus 254 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 333 (590)
++..+..+. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 344444444 445433 246667777776666555556666667777777766665 444433444666666666666
Q ss_pred cCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCccccc-CccccCCCCCccEEECCCCcCcCCCC
Q 007762 334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGM-IPRWLGNLTRLQHIMMPKNHLEGPIP 412 (590)
Q Consensus 334 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~ 412 (590)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 66655555555666666666666666544444555566666666666665542 35555556666666666666554444
Q ss_pred cccCCCCCCc----EEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccc
Q 007762 413 VEFCQLDWLQ----ILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVD 488 (590)
Q Consensus 413 ~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 488 (590)
..+..+++|+ .|++++|.+.+ ++...+. ..+|+.|++++|.+++..+..|.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~------------------------~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNF------------------------IQPGAFK-EIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCE------------------------ECTTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred HHhhhhhhccccceeeecCCCcccc------------------------cCccccC-CCcccEEECCCCceeecCHhHhc
Confidence 4444444443 45555555443 3333222 23677777777777766556667
Q ss_pred ccCCCCEEECcCCcccCC
Q 007762 489 GLSQLSHLILGHNNLEGE 506 (590)
Q Consensus 489 ~l~~L~~L~L~~n~l~~~ 506 (590)
.+++|++|++++|+++..
T Consensus 222 ~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TCCSCCEEECCSSCBCCC
T ss_pred ccccccEEEccCCccccc
Confidence 777777777777777643
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=9e-23 Score=195.25 Aligned_cols=211 Identities=21% Similarity=0.258 Sum_probs=142.2
Q ss_pred CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762 322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM 401 (590)
Q Consensus 322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 401 (590)
+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 44455555555544421 2244455555555555555432 2455666666666666666655555566666666666
Q ss_pred CCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC
Q 007762 402 MPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480 (590)
Q Consensus 402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 480 (590)
+++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|+.|++++|.++ .++...+..+++|+.|++++|.++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCC
Confidence 66666665555556666666666666666665555443 3566677777777664 445454788899999999999999
Q ss_pred CCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccc
Q 007762 481 GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 544 (590)
Q Consensus 481 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~ 544 (590)
+..+..+..+++|++|++++|++.+. +++|+.++++.|.++|.+|.++..+......
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~~~~ 251 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAPDSAK 251 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCGGGSB
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCCCCCc
Confidence 88888889999999999999988743 5678899999999999999998876554433
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.7e-22 Score=192.39 Aligned_cols=202 Identities=23% Similarity=0.211 Sum_probs=114.0
Q ss_pred CCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCC
Q 007762 295 GNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLE 374 (590)
Q Consensus 295 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 374 (590)
..++++++++++++.++ .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+ ...+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 34455555555555555 454433 2455555555555555444455555555555555555543221 14555566
Q ss_pred EEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccC
Q 007762 375 GLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNML 454 (590)
Q Consensus 375 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 454 (590)
+|++++|.++ .+|..+..+++|+.|++++|++.+..+..|..+++|++|++++|.+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--------------------- 138 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--------------------- 138 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---------------------
Confidence 6666666655 344455556666666666666655444555666666666666665553
Q ss_pred CCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccC
Q 007762 455 HGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528 (590)
Q Consensus 455 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 528 (590)
++...|..+++|+.|++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++.
T Consensus 139 ---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 139 ---LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ---CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ---cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 33333555566666666666666544455566666666666666666 55555666666666666666665
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.7e-21 Score=186.12 Aligned_cols=202 Identities=25% Similarity=0.308 Sum_probs=122.1
Q ss_pred cccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEE
Q 007762 250 RLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLA 329 (590)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 329 (590)
..+.++++++.++ .+|..+ .+++++|++++|.++...+..|..+++|++|++++|.+. .++...
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~----------- 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI----------- 80 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTT-----------
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhh-----------
Confidence 3455666666655 444433 235556666555555444445555555555555555554 444433
Q ss_pred ccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcC
Q 007762 330 LSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEG 409 (590)
Q Consensus 330 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 409 (590)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 81 -------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 81 -------------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp -------------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred -------------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 3444555555555555554444455566667777777777666666667777777777777777776
Q ss_pred CCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccc
Q 007762 410 PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDG 489 (590)
Q Consensus 410 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 489 (590)
..+..|..+++|++|++++|.+++.. ...|..+++|+.|++++|.+++..+..|..
T Consensus 148 ~~~~~~~~l~~L~~L~L~~n~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 148 LPKGVFDKLTSLKELRLYNNQLKRVP------------------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCC------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cCHhHccCCcccceeEecCCcCcEeC------------------------hhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 55556777777777777777765322 222555666777777777776555555666
Q ss_pred cCCCCEEECcCCccc
Q 007762 490 LSQLSHLILGHNNLE 504 (590)
Q Consensus 490 l~~L~~L~L~~n~l~ 504 (590)
+++|++|++++|++.
T Consensus 204 l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 204 LEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred ccCCCEEEecCCCee
Confidence 777777777777665
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=7.7e-22 Score=190.17 Aligned_cols=187 Identities=23% Similarity=0.173 Sum_probs=128.0
Q ss_pred CccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEE
Q 007762 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL 424 (590)
Q Consensus 345 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 424 (590)
.++++++++++++.++ .+|..+ .+.++.|++++|.+++..+..+..+++|+.|++++|.+.+..+ ...+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 3445555555555554 333222 1455666666666655555556666666666666666553222 2456666666
Q ss_pred EcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc
Q 007762 425 DISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504 (590)
Q Consensus 425 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (590)
++++|.+.........+++|++|++++|.++ .++...|..+++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 6666666533333334566677777777663 555555889999999999999999888888899999999999999999
Q ss_pred CCCcccccCCCCCCEEECcCCccCCCCccccccC
Q 007762 505 GEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT 538 (590)
Q Consensus 505 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 538 (590)
...+..|..+++|+.|++++|+++ .+|..+...
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~ 194 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence 666667788999999999999999 577665543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.1e-21 Score=185.75 Aligned_cols=207 Identities=22% Similarity=0.183 Sum_probs=102.7
Q ss_pred CCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCcee
Q 007762 274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQ 353 (590)
Q Consensus 274 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 353 (590)
++|+.|++++|.++ .+ ..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34444444444443 11 12344444555555544444 222 112344444444444444443333344444444444
Q ss_pred ccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762 354 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433 (590)
Q Consensus 354 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 433 (590)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 44444443333334444455555555554444434444444555555555554444333344444455555554444442
Q ss_pred CCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccC
Q 007762 434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCK 513 (590)
Q Consensus 434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 513 (590)
++...+..+++|+.|++++|.+.+ .+++|+.|++..|+++|.+|..++.
T Consensus 196 ------------------------~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 196 ------------------------VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp ------------------------CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred ------------------------cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 233335666777777777776653 2456777777777777777777665
Q ss_pred CCC
Q 007762 514 LNQ 516 (590)
Q Consensus 514 l~~ 516 (590)
++.
T Consensus 245 ~~~ 247 (272)
T 3rfs_A 245 VAP 247 (272)
T ss_dssp BCG
T ss_pred cCC
Confidence 543
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.7e-21 Score=180.42 Aligned_cols=195 Identities=19% Similarity=0.179 Sum_probs=102.5
Q ss_pred CCcEEEccCCcCCCccCccccCccccCceeccCcc-ccccCCccccCCCCCCEEEccC-CcccccCccccCCCCCccEEE
Q 007762 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNH-FVGEIPQSLSKCFVLEGLFLNN-NSLSGMIPRWLGNLTRLQHIM 401 (590)
Q Consensus 324 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ 401 (590)
++++|++++|.+.+..+..+..+++|++|++++|. +....+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444333344445555555555553 4433333445555555555554 555544444455555555555
Q ss_pred CCCCcCcCCCCcccCCCCCCc---EEEcccC-cCCCCCCCCCC-CCccc-EEECcCccCCCCCCccccccCCCCcEEEcC
Q 007762 402 MPKNHLEGPIPVEFCQLDWLQ---ILDISDN-NISGSLPSCFH-PLSIE-HVHLSKNMLHGQLKRGTFFNYHSLVTLDLS 475 (590)
Q Consensus 402 L~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~-~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls 475 (590)
+++|.+.+ +|. |..+++|+ +|++++| .+.+..+..+. +++|+ .|++++|.++ .++...+.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 55555543 333 44445554 5555555 55444333332 44455 5555555553 455444444 567777777
Q ss_pred CCc-CCCCcccccccc-CCCCEEECcCCcccCCCcccccCCCCCCEEECcCC
Q 007762 476 YNR-LNGSISDWVDGL-SQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN 525 (590)
Q Consensus 476 ~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (590)
+|. +++..+..|..+ ++|++|++++|+++ .+|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 773 665555566666 67777777777776 33433 4566667766665
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=9.5e-23 Score=203.74 Aligned_cols=258 Identities=19% Similarity=0.214 Sum_probs=131.7
Q ss_pred EEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCC----cccCCCC-CCcEEEccCcccccccchhhhc---C-CCC
Q 007762 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIP----SSFGNMK-FLQLLDVTNNQLTGEIPEHLAV---G-CVN 324 (590)
Q Consensus 254 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~---~-~~~ 324 (590)
++++.|.+++.+|..+. ..++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+.. . +++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 34555555544333332 23346666666665554333 4455555 5666666666655333332221 1 155
Q ss_pred CcEEEccCCcCCCccCcccc----Cc-cccCceeccCccccccCCcc----ccC-CCCCCEEEccCCcccccCc----cc
Q 007762 325 LEYLALSNNSLEGHMFSRNF----NL-TNLKWLQLEGNHFVGEIPQS----LSK-CFVLEGLFLNNNSLSGMIP----RW 390 (590)
Q Consensus 325 L~~L~l~~n~i~~~~~~~~~----~l-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~n~~~~~~~----~~ 390 (590)
|++|++++|.+.+..+..+. .+ ++|++|++++|.+.+..+.. +.. +++|++|++++|.+++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 66666666655543333222 22 45555555555554333322 222 2456666666666553322 22
Q ss_pred cCCCC-CccEEECCCCcCcCCCCccc----CCC-CCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccc
Q 007762 391 LGNLT-RLQHIMMPKNHLEGPIPVEF----CQL-DWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFF 464 (590)
Q Consensus 391 ~~~l~-~L~~L~L~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 464 (590)
+..++ +|++|++++|.+.+..+..+ ..+ ++|++|++++|.+.+.... .++.. +.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~-------------------~l~~~-l~ 221 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA-------------------ELAYI-FS 221 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH-------------------HHHHH-HH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH-------------------HHHHH-Hh
Confidence 23333 56666666666554443322 223 3555555555555421110 12222 33
Q ss_pred c-CCCCcEEEcCCCcCCCCcc----ccccccCCCCEEECcCCcccCC-------CcccccCCCCCCEEECcCCccCCCCc
Q 007762 465 N-YHSLVTLDLSYNRLNGSIS----DWVDGLSQLSHLILGHNNLEGE-------VPVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 465 ~-~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
. .++|+.|++++|.+++..+ ..+..+++|++|++++|++.+. ++..+..+++|+.||+++|++.+..|
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 3 3477777777777775433 3345667777888877774432 23345667777788888887775533
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.7e-21 Score=180.37 Aligned_cols=201 Identities=18% Similarity=0.194 Sum_probs=118.3
Q ss_pred CCCcEEEccCceecccCCcccCCCCCCcEEEccCcc-cccccchhhhcCCCCCcEEEccC-CcCCCccCccccCccccCc
Q 007762 274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQ-LTGEIPEHLAVGCVNLEYLALSN-NSLEGHMFSRNFNLTNLKW 351 (590)
Q Consensus 274 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~ 351 (590)
+++++|++++|.+++..+..++.+++|++|++++|. +. .++...+..+++|++|++++ |.+....+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 466666666666665555556666666666666665 54 55544444555666666655 5555444444555555555
Q ss_pred eeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCC-cCcCCCCcccCCCCCCc-EEEcccC
Q 007762 352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKN-HLEGPIPVEFCQLDWLQ-ILDISDN 429 (590)
Q Consensus 352 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L~-~L~l~~n 429 (590)
|++++|.+.+ +|. +..+++|+ .|+.|++++| .+.+..+..|..+++|+ .|++++|
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred EeCCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 5555555442 232 33444443 0015555555 44444444455555666 6666666
Q ss_pred cCCCCCCCCCCCCcccEEECcCcc-CCCCCCccccccC-CCCcEEEcCCCcCCCCccccccccCCCCEEECcCCc
Q 007762 430 NISGSLPSCFHPLSIEHVHLSKNM-LHGQLKRGTFFNY-HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNN 502 (590)
Q Consensus 430 ~l~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 502 (590)
.++...+..+..++|+.|++++|+ + ..++...|..+ ++|+.|++++|.+++. |.. .+++|+.|+++++.
T Consensus 167 ~l~~i~~~~~~~~~L~~L~L~~n~~l-~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 167 GFTSVQGYAFNGTKLDAVYLNKNKYL-TVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCTTC-CEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CCcccCHhhcCCCCCCEEEcCCCCCc-ccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 655444444445566666776664 5 35666668888 8999999999999854 433 57788999998764
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=189.95 Aligned_cols=202 Identities=17% Similarity=0.132 Sum_probs=144.5
Q ss_pred CCCCcEEEccCCcCCCccCccc--cCccccCceeccCccccccCC----ccccCCCCCCEEEccCCcccccCccccCCCC
Q 007762 322 CVNLEYLALSNNSLEGHMFSRN--FNLTNLKWLQLEGNHFVGEIP----QSLSKCFVLEGLFLNNNSLSGMIPRWLGNLT 395 (590)
Q Consensus 322 ~~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 395 (590)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557777777777776666666 667777777777777765433 2334677888888888888777777777788
Q ss_pred CccEEECCCCcCcCC--C--CcccCCCCCCcEEEcccCcCCCCCCC---C-CCCCcccEEECcCccCCCCCCccccccC-
Q 007762 396 RLQHIMMPKNHLEGP--I--PVEFCQLDWLQILDISDNNISGSLPS---C-FHPLSIEHVHLSKNMLHGQLKRGTFFNY- 466 (590)
Q Consensus 396 ~L~~L~L~~n~~~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~---~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~- 466 (590)
+|++|++++|++.+. + +..+..+++|++|++++|.++..... . -.+++|++|++++|.+.+..|.. +..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 888888888876431 1 22345677888888888877532221 1 13577888888888876555544 4444
Q ss_pred --CCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762 467 --HSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 467 --~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999998 5676664 7999999999999853 43 6788999999999999875
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=5.9e-23 Score=207.39 Aligned_cols=247 Identities=19% Similarity=0.214 Sum_probs=138.6
Q ss_pred CchhhhhcCCCCcEEEccCceeccc----CCcccCCCCCCcEEEccCcc---cccccchhh------hcCCCCCcEEEcc
Q 007762 265 IPVEIGDVLPGLFSLNISMNALDGS----IPSSFGNMKFLQLLDVTNNQ---LTGEIPEHL------AVGCVNLEYLALS 331 (590)
Q Consensus 265 ~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~---~~~~~~~~~------~~~~~~L~~L~l~ 331 (590)
++..+.. +++|++|++++|.++.. ++..+..+++|++|++++|. +.+.+|..+ +..+++|++|+++
T Consensus 24 l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3444433 56677777777766643 33345667777777777653 333344333 1235566666666
Q ss_pred CCcCCC----ccCccccCccccCceeccCccccccCCcc----ccCC---------CCCCEEEccCCcccc-cCc---cc
Q 007762 332 NNSLEG----HMFSRNFNLTNLKWLQLEGNHFVGEIPQS----LSKC---------FVLEGLFLNNNSLSG-MIP---RW 390 (590)
Q Consensus 332 ~n~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~~---------~~L~~L~l~~n~~~~-~~~---~~ 390 (590)
+|.+.. .++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.++. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 665554 23333444555555555555543222111 1122 455555555555541 112 23
Q ss_pred cCCCCCccEEECCCCcCcC-----CCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCcccccc
Q 007762 391 LGNLTRLQHIMMPKNHLEG-----PIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFN 465 (590)
Q Consensus 391 ~~~l~~L~~L~L~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 465 (590)
+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++... ...++.. +..
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~~-l~~ 242 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAIA-LKS 242 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHHH-GGG
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHHH-Hcc
Confidence 3344555555555554431 11223444445555555444442100 0234443 677
Q ss_pred CCCCcEEEcCCCcCCCC----ccccccc--cCCCCEEECcCCcccC----CCcccc-cCCCCCCEEECcCCccCCCCc
Q 007762 466 YHSLVTLDLSYNRLNGS----ISDWVDG--LSQLSHLILGHNNLEG----EVPVQL-CKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 466 ~~~L~~L~ls~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~p 532 (590)
+++|+.|+|++|.+++. ++..+.. +++|++|++++|++++ .+|..+ .++++|+.|++++|++++..|
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88899999999988864 4556633 8889999999999886 367766 668999999999999987664
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3e-20 Score=175.46 Aligned_cols=158 Identities=25% Similarity=0.286 Sum_probs=103.9
Q ss_pred CCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEECc
Q 007762 372 VLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHLS 450 (590)
Q Consensus 372 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~ 450 (590)
.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44455555555444444444555555555555555554444445555555555555555554443333 24455555555
Q ss_pred CccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCC
Q 007762 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGP 530 (590)
Q Consensus 451 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 530 (590)
+|.++ .++...+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 116 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55553 45555477788999999999999877777888899999999999999877777888899999999999999875
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=5.9e-22 Score=196.27 Aligned_cols=254 Identities=19% Similarity=0.228 Sum_probs=170.9
Q ss_pred cccEEEccCCcCCCCCchhhhhcC--CCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccc-cchhhhcCCCCCc
Q 007762 250 RLRLLDISNNNFRGHIPVEIGDVL--PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE-IPEHLAVGCVNLE 326 (590)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~ 326 (590)
.++.++++++.+. +..+.. + ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++.. +..+++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCS
T ss_pred hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCC
Confidence 3677888887765 333333 3 6889999998888865554 55788899999988887744 4443 34578888
Q ss_pred EEEccCCcCCCccCccccCccccCceeccCc-ccccc-CCccccCCCCCCEEEccCC-ccccc-CccccCCCC-CccEEE
Q 007762 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGN-HFVGE-IPQSLSKCFVLEGLFLNNN-SLSGM-IPRWLGNLT-RLQHIM 401 (590)
Q Consensus 327 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~ 401 (590)
+|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888888877666666677778888888777 45432 4455666777777777777 66643 345566667 777777
Q ss_pred CCCCc--Cc-CCCCcccCCCCCCcEEEcccCc-CCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCC
Q 007762 402 MPKNH--LE-GPIPVEFCQLDWLQILDISDNN-ISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477 (590)
Q Consensus 402 L~~n~--~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n 477 (590)
+++|. +. +.++..+..+++|++|++++|. ++ +..+.. +..+++|+.|++++|
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-----------------------~~~~~~-l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-----------------------NDCFQE-FFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-----------------------GGGGGG-GGGCTTCCEEECTTC
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC-----------------------HHHHHH-HhCCCCCCEeeCCCC
Confidence 77773 33 2334455566666666666665 33 223332 667788999999888
Q ss_pred c-CCCCccccccccCCCCEEECcCCcccCCCcccccCC-CCCCEEECcCCccCCCCcccccc
Q 007762 478 R-LNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL-NQLQLLDLSNNNLHGPIPPCFDN 537 (590)
Q Consensus 478 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~ 537 (590)
. ++......+..+++|++|++++| ++.. .+..+ ..+..|++++|++++..|+.+.+
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 4 33332335778899999999988 5433 23333 23666678999999888887765
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.7e-20 Score=181.20 Aligned_cols=191 Identities=18% Similarity=0.250 Sum_probs=107.4
Q ss_pred CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762 323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM 402 (590)
Q Consensus 323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 402 (590)
++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 3444444444444321 1 23344444444444444442221 44445555555555554432 23445555555555
Q ss_pred CCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q 007762 403 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS 482 (590)
Q Consensus 403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 482 (590)
++|.+.+ ++ .+..+++|++|++++|.+++..+ ...+++|+.|++++|.+. .++. +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCcC
Confidence 5555543 22 24555555555555555543322 223455566666666553 2332 66778888888888888754
Q ss_pred ccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762 483 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
.+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 43 777888888888888887543 37788888888888888874
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=9.1e-21 Score=197.83 Aligned_cols=234 Identities=23% Similarity=0.279 Sum_probs=150.9
Q ss_pred CCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECC
Q 007762 324 NLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMP 403 (590)
Q Consensus 324 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 403 (590)
+++.|++++|.+.+ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666655 33333 256667777776666 444 345677777777777775 444 443 77778888
Q ss_pred CCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q 007762 404 KNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI 483 (590)
Q Consensus 404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 483 (590)
+|.+.+ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|+|++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCC-ch
Confidence 777775 444 56778888888888775 333 46778888888888754 665 43 88999999999998 56
Q ss_pred cccccccCCC-------CEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccCCCCCCCccce
Q 007762 484 SDWVDGLSQL-------SHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNKQFEI 556 (590)
Q Consensus 484 ~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 556 (590)
|. +.. +| ++|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+.....+ .++...+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~---~~~~~~~~l 268 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY---HGPRIYFSM 268 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC------CEEECCC
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccc---cCCeeEEee
Confidence 66 554 77 99999999999 688888889999999999999999999988876432211 121111110
Q ss_pred eccccCCCCCCCCCcccccCCCCCCCCcccccc
Q 007762 557 FFFIQGPQGHPRLATLVMNQHSPAQGHEDLEAQ 589 (590)
Q Consensus 557 ~~~~~~~~~np~~~~~~~~~~~~~~~~~~~~~~ 589 (590)
.-.......+| +|.+...|-+.....+....|
T Consensus 269 ~~~~~~~~~~p-~~~~~~~Wl~~~~~~~~~~~W 300 (571)
T 3cvr_A 269 SDGQQNTLHRP-LADAVTAWFPENKQSDVSQIW 300 (571)
T ss_dssp ----------C-CSHHHHTTCC-----CHHHHH
T ss_pred ccccccccccc-chhhHHHHhhhhcccchhhhh
Confidence 00011122455 899999999877766555544
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.6e-22 Score=202.11 Aligned_cols=205 Identities=19% Similarity=0.156 Sum_probs=87.9
Q ss_pred CcEEEccCCCCCCCCc----CCCCCCC-cccEEEccCCcCCCCCchhhhhc----CCCCcEEEccCceecccCCcc----
Q 007762 227 LESLFLVNDSLAGPFR----LPIHSHK-RLRLLDISNNNFRGHIPVEIGDV----LPGLFSLNISMNALDGSIPSS---- 293 (590)
Q Consensus 227 L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~~~~~~~~~---- 293 (590)
|+.|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+... +++|++|++++|.+++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 4444444444443322 2333444 45555555555544333333321 145555555555554333322
Q ss_pred cCCC-CCCcEEEccCcccccccchhhhc---C-CCCCcEEEccCCcCCCccCc----cccCcc-ccCceeccCccccccC
Q 007762 294 FGNM-KFLQLLDVTNNQLTGEIPEHLAV---G-CVNLEYLALSNNSLEGHMFS----RNFNLT-NLKWLQLEGNHFVGEI 363 (590)
Q Consensus 294 l~~l-~~L~~L~l~~n~~~~~~~~~~~~---~-~~~L~~L~l~~n~i~~~~~~----~~~~l~-~L~~L~l~~~~~~~~~ 363 (590)
+..+ ++|++|++++|.+.+..+..+.. . +.+|++|++++|.+.+.... .+...+ +|++|++++|.+.+..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 2222 45555555555554322222211 1 23555555555555432211 112222 4555555555544333
Q ss_pred Cc----cccCC-CCCCEEEccCCccccc----CccccCC-CCCccEEECCCCcCcCCCC----cccCCCCCCcEEEcccC
Q 007762 364 PQ----SLSKC-FVLEGLFLNNNSLSGM----IPRWLGN-LTRLQHIMMPKNHLEGPIP----VEFCQLDWLQILDISDN 429 (590)
Q Consensus 364 ~~----~l~~~-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~n 429 (590)
+. .+..+ ++|+.|++++|.+++. ++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++++|
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 22 22223 3555555555555432 1222222 2355555555555543322 12334455555555555
Q ss_pred cC
Q 007762 430 NI 431 (590)
Q Consensus 430 ~l 431 (590)
.+
T Consensus 264 ~l 265 (362)
T 3goz_A 264 IV 265 (362)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=6e-20 Score=179.28 Aligned_cols=227 Identities=18% Similarity=0.173 Sum_probs=143.7
Q ss_pred CcccEEEcCCCcCccccchHH--hhcCCCCcEEEccCCCCCCCCcCCC--CCCCcccEEEccCCcCCCCCc----hhhhh
Q 007762 200 HDLEYVDLSHMKMNGEFPTWL--LENNTNLESLFLVNDSLAGPFRLPI--HSHKRLRLLDISNNNFRGHIP----VEIGD 271 (590)
Q Consensus 200 ~~L~~L~ls~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~ 271 (590)
..++.+.+.++.+.......+ +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 457888888887754322221 1245779999999999998888777 889999999999999986544 2223
Q ss_pred cCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccc--cch-hhhcCCCCCcEEEccCCcCCCccCc---cccC
Q 007762 272 VLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGE--IPE-HLAVGCVNLEYLALSNNSLEGHMFS---RNFN 345 (590)
Q Consensus 272 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~-~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~ 345 (590)
.+++|++|++++|.+++..+..++.+++|++|++++|.+.+. ++. .....+++|++|++++|.++..... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 478999999999999877778888899999999999887532 221 1123456666777776666431111 1234
Q ss_pred ccccCceeccCccccccCCccccCC---CCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCc
Q 007762 346 LTNLKWLQLEGNHFVGEIPQSLSKC---FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQ 422 (590)
Q Consensus 346 l~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 422 (590)
+++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++.+. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 5566666666666655444444444 45566666665555 3343332 4555555555555532 21 34445555
Q ss_pred EEEcccCcCC
Q 007762 423 ILDISDNNIS 432 (590)
Q Consensus 423 ~L~l~~n~l~ 432 (590)
.|++++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 5555555544
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.7e-20 Score=182.55 Aligned_cols=242 Identities=19% Similarity=0.144 Sum_probs=148.7
Q ss_pred cEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcE-EEc
Q 007762 252 RLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEY-LAL 330 (590)
Q Consensus 252 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~-L~l 330 (590)
++++.++++++ .+|..+ ++++++|++++|.++...+..|+++++|++|++++|.+.+.++...+.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777 677654 3577888888888774444567777888888888777765566665555665554 334
Q ss_pred cCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCC-CcCcC
Q 007762 331 SNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK-NHLEG 409 (590)
Q Consensus 331 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~~~~ 409 (590)
..|++....+..|..+++|++|++++|.+....+..+ ....++..+++.+ +.+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~------------------------~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK------------------------IHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT------------------------CCBSSCEEEEEESCTTCCE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhh------------------------cccchhhhhhhcccccccc
Confidence 4455555555555555555555555555543333333 3333444444433 23332
Q ss_pred CCCcccCCCC-CCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccc
Q 007762 410 PIPVEFCQLD-WLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVD 488 (590)
Q Consensus 410 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 488 (590)
..+..|..+. .++.|++++|.++.+.+..+...+|++++++++...+.++..+|.++++|+.||+++|+++...+..
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-- 221 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-- 221 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--
Confidence 2233344443 4666677777766666666666677777776543336777777788888888888888888443333
Q ss_pred ccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCC
Q 007762 489 GLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNN 525 (590)
Q Consensus 489 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 525 (590)
+.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus 222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4456666665554444666 3777888888888754
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=9.4e-20 Score=172.05 Aligned_cols=158 Identities=22% Similarity=0.249 Sum_probs=94.2
Q ss_pred ccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcc
Q 007762 348 NLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDIS 427 (590)
Q Consensus 348 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 427 (590)
+++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44444444444444444444444555555555555544444445555555555555555554444445555555555555
Q ss_pred cCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCC
Q 007762 428 DNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE 506 (590)
Q Consensus 428 ~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 506 (590)
+|.+++..+..+. +++|+.|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555544444332 455555555555553 44544477788899999999998877777888888999999999988755
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=3.7e-21 Score=190.54 Aligned_cols=200 Identities=17% Similarity=0.192 Sum_probs=117.5
Q ss_pred cccEEEcCCCcCccccchHHhhcC--CCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCC-CchhhhhcCCCCc
Q 007762 201 DLEYVDLSHMKMNGEFPTWLLENN--TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGH-IPVEIGDVLPGLF 277 (590)
Q Consensus 201 ~L~~L~ls~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~ 277 (590)
.++.++++++.+. +.. +..+ ++++.|+++++.+.+..+. +..+++|+.|++++|.+++. ++..+. .+++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCS
T ss_pred hheeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCCC
Confidence 4678888887765 222 3445 7888888888877765544 44677788888887776643 343333 367777
Q ss_pred EEEccCceecccCCcccCCCCCCcEEEccCc-ccccc-cchhhhcCCCCCcEEEccCC-cCCCccCccccCccccCceec
Q 007762 278 SLNISMNALDGSIPSSFGNMKFLQLLDVTNN-QLTGE-IPEHLAVGCVNLEYLALSNN-SLEGHMFSRNFNLTNLKWLQL 354 (590)
Q Consensus 278 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l 354 (590)
+|++++|.+++..+..++.+++|++|++++| .+++. ++.. ...+++|++|++++| .+.+..
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~--------------- 185 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKH--------------- 185 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHH---------------
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChHH---------------
Confidence 7777777766666666666777777777776 45432 2322 233666666666666 554320
Q ss_pred cCccccccCCccccCCC-CCCEEEccCC--ccc-ccCccccCCCCCccEEECCCCc-CcCCCCcccCCCCCCcEEEcccC
Q 007762 355 EGNHFVGEIPQSLSKCF-VLEGLFLNNN--SLS-GMIPRWLGNLTRLQHIMMPKNH-LEGPIPVEFCQLDWLQILDISDN 429 (590)
Q Consensus 355 ~~~~~~~~~~~~l~~~~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n 429 (590)
.+..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 186 --------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 186 --------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp --------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred --------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 122233444 5555555555 222 2233344555666666666665 44444555666666666666666
Q ss_pred c
Q 007762 430 N 430 (590)
Q Consensus 430 ~ 430 (590)
.
T Consensus 258 ~ 258 (336)
T 2ast_B 258 Y 258 (336)
T ss_dssp T
T ss_pred C
Confidence 4
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2.3e-19 Score=174.61 Aligned_cols=192 Identities=20% Similarity=0.288 Sum_probs=106.8
Q ss_pred CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCce
Q 007762 273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL 352 (590)
Q Consensus 273 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 352 (590)
+++|++|++++|.++ .++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 446666666666665 233 4555666666666666665 3333 23455666666666655442 234444555555
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762 353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432 (590)
Q Consensus 353 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 432 (590)
++++|.+. +. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 113 ~l~~n~l~------------------------~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 113 DLTSTQIT------------------------DV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECTTSCCC------------------------CC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCC------------------------Cc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 55555444 22 1 14444445555555544442211 444455555555555544
Q ss_pred CCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762 433 GSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 505 (590)
Q Consensus 433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 505 (590)
+..+ ...+++|+.|++++|.+. .++. +..+++|+.|++++|.+++..+ +..+++|++|++++|++++
T Consensus 165 ~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DLTP-LANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CChh-hcCCCCCCEEECCCCccC-cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3222 223445555555555553 2332 6677888888888888885543 7788888888888888874
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=3.7e-21 Score=194.24 Aligned_cols=240 Identities=18% Similarity=0.179 Sum_probs=119.4
Q ss_pred CChhccCCCcccEEEcCCCcCccccchHH---hhcCCCCcEEEccCCCCCC---CCcCC-------CCCCCcccEEEccC
Q 007762 192 FPKFLYHQHDLEYVDLSHMKMNGEFPTWL---LENNTNLESLFLVNDSLAG---PFRLP-------IHSHKRLRLLDISN 258 (590)
Q Consensus 192 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~---~~~~~-------~~~~~~L~~L~l~~ 258 (590)
++..+..+++|++|++++|.+.+..+..+ +..+++|+.|++++|.+.. .++.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45666777788888888887765544332 2456777777777754332 22222 24556666666666
Q ss_pred CcCCCC----CchhhhhcCCCCcEEEccCceecccCCc----ccCCC---------CCCcEEEccCccccc-ccch--hh
Q 007762 259 NNFRGH----IPVEIGDVLPGLFSLNISMNALDGSIPS----SFGNM---------KFLQLLDVTNNQLTG-EIPE--HL 318 (590)
Q Consensus 259 n~l~~~----~~~~~~~~~~~L~~L~L~~n~~~~~~~~----~l~~l---------~~L~~L~l~~n~~~~-~~~~--~~ 318 (590)
|.+++. ++..+.. +++|++|++++|.++...+. .+..+ ++|++|++++|.+.. .++. ..
T Consensus 104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 666542 3333333 56666666666665432222 22222 556666666665541 2221 11
Q ss_pred hcCCCCCcEEEccCCcCCC-----ccCccccCccccCceeccCcccc----ccCCccccCCCCCCEEEccCCccccc---
Q 007762 319 AVGCVNLEYLALSNNSLEG-----HMFSRNFNLTNLKWLQLEGNHFV----GEIPQSLSKCFVLEGLFLNNNSLSGM--- 386 (590)
Q Consensus 319 ~~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~n~~~~~--- 386 (590)
+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 2235555666665555541 11223444555555555555543 23334444455555555555554432
Q ss_pred -Ccccc--CCCCCccEEECCCCcCcC----CCCccc-CCCCCCcEEEcccCcCC
Q 007762 387 -IPRWL--GNLTRLQHIMMPKNHLEG----PIPVEF-CQLDWLQILDISDNNIS 432 (590)
Q Consensus 387 -~~~~~--~~l~~L~~L~L~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~l~ 432 (590)
++..+ ..+++|++|+|++|.+.+ .++..+ .++++|++|++++|.++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 22233 224445555555554443 133333 33444444444444444
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=7.3e-19 Score=160.89 Aligned_cols=164 Identities=22% Similarity=0.229 Sum_probs=111.3
Q ss_pred CCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCC-CCCcccEEEC
Q 007762 371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCF-HPLSIEHVHL 449 (590)
Q Consensus 371 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l 449 (590)
+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 355555555555554444445555566666666655554444445556666666666666654444433 3556666666
Q ss_pred cCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762 450 SKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 450 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+ .+++|+.|+++.|+++|
T Consensus 108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred CCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 666663 4454547788899999999999997777778889999999999997764 45688999999999999
Q ss_pred CCccccccCCccc
Q 007762 530 PIPPCFDNTTLHE 542 (590)
Q Consensus 530 ~~p~~~~~l~~~~ 542 (590)
.+|..+..+....
T Consensus 180 ~ip~~~~~l~~~~ 192 (208)
T 2o6s_A 180 VVRNSAGSVAPDS 192 (208)
T ss_dssp TBBCTTSSBCTTC
T ss_pred eeeccCccccCCc
Confidence 9999888765543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=6.2e-19 Score=161.38 Aligned_cols=175 Identities=23% Similarity=0.183 Sum_probs=91.6
Q ss_pred CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762 323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM 402 (590)
Q Consensus 323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 402 (590)
+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555544433334444455555555555544333333444555555555555554443344445555555555
Q ss_pred CCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q 007762 403 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS 482 (590)
Q Consensus 403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 482 (590)
++|.+.+..+..|..+++|++|++++|.++ .++...+..+++|+.|++++|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~------------------------~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK------------------------SVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS------------------------CCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccc------------------------eeCHHHhccCCCccEEEecCCCeec-
Confidence 555554433334444555555555555444 3333335566677777777775542
Q ss_pred ccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762 483 ISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
.+++|++|+++.|++++.+|..++.++. +...|...+..+
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~ 202 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPV 202 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBG
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCcc
Confidence 3456677777777777777776666554 444555444433
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.5e-18 Score=170.69 Aligned_cols=240 Identities=18% Similarity=0.117 Sum_probs=177.7
Q ss_pred cEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCC-cccCCCCCCcE-EEc
Q 007762 228 ESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIP-SSFGNMKFLQL-LDV 305 (590)
Q Consensus 228 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~-L~l 305 (590)
+.++.++++++. +|..+ .+++++|++++|.++ .+|...+..+++|++|++++|.+.+.++ ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 567778877775 34433 358999999999998 7777665569999999999999865555 56788888876 566
Q ss_pred cCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccC-ccccccCCccccCCC-CCCEEEccCCcc
Q 007762 306 TNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEG-NHFVGEIPQSLSKCF-VLEGLFLNNNSL 383 (590)
Q Consensus 306 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~n~~ 383 (590)
..|++. .++...+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|++
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 678888 77777777899999999999999887776776777888888866 455544445666654 688999999999
Q ss_pred cccCccccCCCCCccEEECCC-CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccc
Q 007762 384 SGMIPRWLGNLTRLQHIMMPK-NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGT 462 (590)
Q Consensus 384 ~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 462 (590)
+...+..+ ...+|++|++.+ |.+....+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.-.+.+|.
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP~-- 241 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLPT-- 241 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCCC--
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCCC--
Confidence 85544444 557899999975 5566444457899999999999999998554433 45677777655544355553
Q ss_pred cccCCCCcEEEcCCC
Q 007762 463 FFNYHSLVTLDLSYN 477 (590)
Q Consensus 463 ~~~~~~L~~L~ls~n 477 (590)
+..+++|+.++++++
T Consensus 242 l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTCCSCCEEECSCH
T ss_pred chhCcChhhCcCCCC
Confidence 566677777777654
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7e-18 Score=162.59 Aligned_cols=173 Identities=23% Similarity=0.350 Sum_probs=108.4
Q ss_pred CccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEE
Q 007762 345 NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL 424 (590)
Q Consensus 345 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 424 (590)
.+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+ ...+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEE
Confidence 344555555555554422 2 24455555555555555553322 5555566666666655543 1235556666666
Q ss_pred EcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc
Q 007762 425 DISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504 (590)
Q Consensus 425 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (590)
++++|.+.+. +....+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+++..+ +..+++|++|++++|+++
T Consensus 118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-c--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 6666665532 333345566666666666633 3 237778888888888888886554 788888888888888888
Q ss_pred CCCcccccCCCCCCEEECcCCccCCCC
Q 007762 505 GEVPVQLCKLNQLQLLDLSNNNLHGPI 531 (590)
Q Consensus 505 ~~~~~~~~~l~~L~~L~l~~n~l~~~~ 531 (590)
+ ++ .+..+++|+.|++++|+++...
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 4 44 4788888888888888887543
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.1e-17 Score=174.61 Aligned_cols=194 Identities=24% Similarity=0.339 Sum_probs=116.1
Q ss_pred CCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceec
Q 007762 275 GLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQL 354 (590)
Q Consensus 275 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 354 (590)
+++.|++++|.+++ +|..+ .++|++|++++|.+. .+| . .+++|++|++++|.+.+ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 78888888888774 66544 267888888888877 666 2 36777777777777766 343 433 6677777
Q ss_pred cCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCC
Q 007762 355 EGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGS 434 (590)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 434 (590)
++|.+.+ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+.+ +|. |. ++|+.|++++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 7766664 333 45666666666666654 333 34566666666666554 443 43 55666666666555 2
Q ss_pred CCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCC
Q 007762 435 LPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKL 514 (590)
Q Consensus 435 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 514 (590)
+|. +.. +| +...+.|+.|++++|.++ .+|..+..+++|++|++++|++++.+|..+..+
T Consensus 195 lp~-~~~-~L------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV-RN------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC---------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH-hh------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 222 111 22 111122377777777776 456656667777777777777776666665554
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.1e-17 Score=154.04 Aligned_cols=135 Identities=24% Similarity=0.275 Sum_probs=91.4
Q ss_pred CCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECc
Q 007762 371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450 (590)
Q Consensus 371 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 450 (590)
+.++.|++++|.+++..+..|..+++|+.|+|++|.+.+..|..|..+++|++|++++|.++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------------------ 93 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT------------------ 93 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC------------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC------------------
Confidence 45555666666555544445555566666666666655555555555555555555555554
Q ss_pred CccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 451 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
.++...|.++++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 94 ------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 94 ------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 3444446677788888888888887777778888888888888888886666677778888888888888764
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.8e-17 Score=173.59 Aligned_cols=195 Identities=22% Similarity=0.332 Sum_probs=132.8
Q ss_pred EEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcC
Q 007762 328 LALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHL 407 (590)
Q Consensus 328 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 407 (590)
+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 3444444443222 3346667777777766653 23 36667777777777777765433 66777777777777776
Q ss_pred cCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccc
Q 007762 408 EGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWV 487 (590)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 487 (590)
.+ ++ .+..+++|+.|++++|.+.+ ++....+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+++..| +
T Consensus 100 ~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 100 KD-LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp CC-CT-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCC-C--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-Ch-hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCC-c--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 63 22 56677777777777777764 3444456777777777777743 3 237788889999999998887666 8
Q ss_pred cccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCccccccC
Q 007762 488 DGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNT 538 (590)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 538 (590)
..+++|+.|+|++|++++ +| .+..+++|+.|+|++|++.+.....+..+
T Consensus 172 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred ccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCcccccccE
Confidence 888899999999998885 33 58888999999999998886544444443
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=151.79 Aligned_cols=136 Identities=24% Similarity=0.234 Sum_probs=89.5
Q ss_pred CCEEEccCCcccccCc-cccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcC
Q 007762 373 LEGLFLNNNSLSGMIP-RWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSK 451 (590)
Q Consensus 373 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 451 (590)
++.|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~------------------- 94 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE------------------- 94 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------------------
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-------------------
Confidence 3444555554443322 23444445555555555544443444444444444444444443
Q ss_pred ccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCC
Q 007762 452 NMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPI 531 (590)
Q Consensus 452 n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 531 (590)
.++...|..+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++....
T Consensus 95 -----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 95 -----NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp -----CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred -----ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 344444777888888888888888877888888888999999999888777888888889999999999888654
Q ss_pred c
Q 007762 532 P 532 (590)
Q Consensus 532 p 532 (590)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 3
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=7.5e-17 Score=149.56 Aligned_cols=137 Identities=23% Similarity=0.293 Sum_probs=88.0
Q ss_pred CCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECc
Q 007762 371 FVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLS 450 (590)
Q Consensus 371 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 450 (590)
++|++|++++|.+++..+..|..+++|+.|+|++|.+....+..|..+++|++|++++|.++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~------------------ 101 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT------------------ 101 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC------------------
Confidence 44555555555554444444444555555555555544333334444445555555444443
Q ss_pred CccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCC
Q 007762 451 KNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGP 530 (590)
Q Consensus 451 ~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 530 (590)
.++...|..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus 102 ------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 102 ------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 344444677788888888888888 6677788888888888888888866666788888888888888888765
Q ss_pred Cc
Q 007762 531 IP 532 (590)
Q Consensus 531 ~p 532 (590)
.+
T Consensus 175 c~ 176 (229)
T 3e6j_A 175 CR 176 (229)
T ss_dssp BG
T ss_pred cc
Confidence 43
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=2.8e-17 Score=151.28 Aligned_cols=145 Identities=24% Similarity=0.283 Sum_probs=108.3
Q ss_pred CEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCcc
Q 007762 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNM 453 (590)
Q Consensus 374 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 453 (590)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--------------------- 69 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--------------------- 69 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------------
Confidence 45566666655 3343333 56666666666666555556666666666666666654
Q ss_pred CCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCcc
Q 007762 454 LHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPP 533 (590)
Q Consensus 454 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 533 (590)
.+.+..|.++++|+.|+|++|.++...+..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|.
T Consensus 70 ---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 70 ---ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp ---EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ---CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 33333488889999999999999977777789999999999999999988889999999999999999999987777
Q ss_pred ccccCCcccccc
Q 007762 534 CFDNTTLHESYS 545 (590)
Q Consensus 534 ~~~~l~~~~~~~ 545 (590)
.|..++.+...+
T Consensus 147 ~~~~l~~L~~L~ 158 (220)
T 2v9t_B 147 TFSPLRAIQTMH 158 (220)
T ss_dssp TTTTCTTCCEEE
T ss_pred HHhCCCCCCEEE
Confidence 787765544333
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.1e-17 Score=164.71 Aligned_cols=129 Identities=27% Similarity=0.261 Sum_probs=79.7
Q ss_pred cEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCcccc-CccccCceeccCccccccCCccccCCCCCCEEEcc
Q 007762 301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNF-NLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLN 379 (590)
Q Consensus 301 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 379 (590)
+.++++++.+. .+|..+ .+.++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 35555555555 455433 23456666666666555555554 56666666666666665555556666666666666
Q ss_pred CCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762 380 NNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433 (590)
Q Consensus 380 ~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 433 (590)
+|+++...+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 666665555566666667777777766665556666666666777666666654
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.8e-17 Score=157.48 Aligned_cols=170 Identities=21% Similarity=0.270 Sum_probs=99.0
Q ss_pred CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762 323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM 402 (590)
Q Consensus 323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 402 (590)
++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEEC
Confidence 3444444444444332 123444555555555555443222 44555555555555555432 22555556666666
Q ss_pred CCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q 007762 403 PKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGS 482 (590)
Q Consensus 403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 482 (590)
++|.+.+. ..+..+++|+.|++++|.+++. +....+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCB-
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCCC-
Confidence 66655532 3455556666666666665543 333345566666666666643 332 7778889999999999885
Q ss_pred ccccccccCCCCEEECcCCcccCC
Q 007762 483 ISDWVDGLSQLSHLILGHNNLEGE 506 (590)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~~ 506 (590)
++ .+..+++|+.|++++|+++..
T Consensus 193 l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred Ch-hhccCCCCCEEECcCCcccCC
Confidence 34 378889999999999998853
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.2e-17 Score=156.56 Aligned_cols=171 Identities=18% Similarity=0.222 Sum_probs=123.1
Q ss_pred ccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEE
Q 007762 346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 425 (590)
Q Consensus 346 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 425 (590)
+.++..++++++.+.+.. .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455566666666665322 35566777777777777663 33 56677777777777777764333 77777777777
Q ss_pred cccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762 426 ISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 505 (590)
Q Consensus 426 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 505 (590)
+++|.+++..+ ... ++|+.|++++|.+++ ++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|++++
T Consensus 92 L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG-IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT-CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc-ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 77777775333 222 778888888888743 33 277888999999999998854 3 58888999999999999986
Q ss_pred CCcccccCCCCCCEEECcCCccCCCC
Q 007762 506 EVPVQLCKLNQLQLLDLSNNNLHGPI 531 (590)
Q Consensus 506 ~~~~~~~~l~~L~~L~l~~n~l~~~~ 531 (590)
. ..+..+++|+.|++++|++.+..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h--HHhccCCCCCEEeCCCCcccCCc
Confidence 5 67888899999999999988653
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=3.8e-17 Score=162.82 Aligned_cols=175 Identities=22% Similarity=0.208 Sum_probs=107.1
Q ss_pred cEEEccCCcCCCccCccccCccccCceeccCccccccCCcccc-CCCCCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762 326 EYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLS-KCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404 (590)
Q Consensus 326 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 404 (590)
+.++++++.+.. +|..+ .+.++.|++++|.+.+..+..+. .+++|+.|++++|.+++..+..|..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 567777777665 33333 24467777777777765555565 677777777777777766666677777777777777
Q ss_pred CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCcccc---ccCCCCcEEEcCCCcCC
Q 007762 405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTF---FNYHSLVTLDLSYNRLN 480 (590)
Q Consensus 405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~ls~n~l~ 480 (590)
|.+....+..|..+++|++|++++|.+.+..+..+. +++|+.|++++|.+. .++...+ ..+++|+.|+|++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777765566677777777777777777655444433 455555666555553 3444433 34555555555555555
Q ss_pred CCccccccccCC--CCEEECcCCccc
Q 007762 481 GSISDWVDGLSQ--LSHLILGHNNLE 504 (590)
Q Consensus 481 ~~~~~~~~~l~~--L~~L~L~~n~l~ 504 (590)
+..+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 444444555544 255555555554
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.5e-16 Score=168.00 Aligned_cols=188 Identities=22% Similarity=0.294 Sum_probs=106.8
Q ss_pred CcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceecc
Q 007762 276 LFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLE 355 (590)
Q Consensus 276 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 355 (590)
+..+.+..+.+.+..+ +..++.|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 4444555555443222 345667777777777776 5543 2346777777777777765443 5666777777777
Q ss_pred CccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCC
Q 007762 356 GNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSL 435 (590)
Q Consensus 356 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 435 (590)
+|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 776653 22 466666677777776666642 3456666666666666666643 45566666666666666665443
Q ss_pred CCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC
Q 007762 436 PSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480 (590)
Q Consensus 436 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 480 (590)
+ ...+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.
T Consensus 170 ~-l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 P-LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G-GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEE
T ss_pred h-hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCc
Confidence 3 2234445555555554422 21 1444444445555444444
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2.8e-16 Score=144.63 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=57.1
Q ss_pred CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762 322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM 401 (590)
Q Consensus 322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 401 (590)
+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 44444444444444443333444455555555555555444444455555555555555555544455555555555555
Q ss_pred CCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762 402 MPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432 (590)
Q Consensus 402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 432 (590)
|++|.+.+..|..|..+++|+.|++++|.+.
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5555555444555555555555555555544
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.6e-16 Score=143.79 Aligned_cols=152 Identities=16% Similarity=0.261 Sum_probs=83.2
Q ss_pred ccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEE
Q 007762 346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 425 (590)
Q Consensus 346 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 425 (590)
+++|+.|++++|.+. .++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 444444555444444 222 34444455555555543321 12344444555555555444433344444444444444
Q ss_pred cccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCc-CCCCccccccccCCCCEEECcCCccc
Q 007762 426 ISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNR-LNGSISDWVDGLSQLSHLILGHNNLE 504 (590)
Q Consensus 426 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (590)
+++|.++ +..+.. +..+++|+.|++++|. ++ .++ .+..+++|++|++++|+++
T Consensus 119 Ls~n~i~-----------------------~~~~~~-l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 119 ISHSAHD-----------------------DSILTK-INTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CCSSBCB-----------------------GGGHHH-HTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred ecCCccC-----------------------cHhHHH-HhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 4444443 323333 6677778888888887 55 344 5777788888888888887
Q ss_pred CCCcccccCCCCCCEEECcCCccCC
Q 007762 505 GEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 505 ~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
+ ++ .+..+++|+.|++++|++.+
T Consensus 173 ~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 173 D-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp C-CT-TGGGCSSCCEEEECBC----
T ss_pred C-hH-HhccCCCCCEEEeeCcccCC
Confidence 4 33 67778888888888887764
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.4e-17 Score=162.12 Aligned_cols=296 Identities=15% Similarity=0.171 Sum_probs=165.9
Q ss_pred CCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccC
Q 007762 17 HFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMAN 96 (590)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 96 (590)
.+.+++.|.+++. +.......+...+++|++|+|++|.+... ... -..++.++.+.+..+.+. ..+|.+
T Consensus 23 ~~~~l~~L~l~g~---i~~~~~~~l~~~l~~L~~LdLs~n~i~~~--~~~---~~~~~~~~~~~~~~~~I~---~~aF~~ 91 (329)
T 3sb4_A 23 EANSITHLTLTGK---LNAEDFRHLRDEFPSLKVLDISNAEIKMY--SGK---AGTYPNGKFYIYMANFVP---AYAFSN 91 (329)
T ss_dssp HHHHCSEEEEEEE---ECHHHHHHHHHSCTTCCEEEEEEEEECCE--EES---SSSSGGGCCEEECTTEEC---TTTTEE
T ss_pred hhCceeEEEEecc---ccHHHHHHHHHhhccCeEEecCcceeEEe--cCc---cccccccccccccccccC---HHHhcc
Confidence 3566777777754 12222334442267777888877776410 011 111222455555555333 455666
Q ss_pred --------CCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCC
Q 007762 97 --------MTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSP 168 (590)
Q Consensus 97 --------l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~ 168 (590)
|++|++|++++ .++ .++...|.+|++|+.+++++|.+. .++...|.++.++..+.........
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~------ 162 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYR------ 162 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHH------
T ss_pred cccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhh------
Confidence 77777777777 666 677667777777777777777665 4455556555555544333211000
Q ss_pred CCCCCCcccceEeccCCCCCCCcCChhccCCCccc-EEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCC
Q 007762 169 SLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE-YVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHS 247 (590)
Q Consensus 169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 247 (590)
.....-...+..+..|+ .+.+.... .++..++... ..
T Consensus 163 ------------------~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~---------------------~~ 200 (329)
T 3sb4_A 163 ------------------FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG---------------------LQ 200 (329)
T ss_dssp ------------------TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT---------------------CC
T ss_pred ------------------ccccccccccccccccceeEEecCCC---cHHHHHhhcc---------------------cC
Confidence 00011122233344444 33333221 2232222111 12
Q ss_pred CCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCc-
Q 007762 248 HKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLE- 326 (590)
Q Consensus 248 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~- 326 (590)
..+++.+.+.++-.. .....+...+++|+++++++|.++......|.+|++|+.+++.+| +. .++...|.++.+|+
T Consensus 201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCE
T ss_pred ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccE
Confidence 234444555443111 112222233677777777777777555566777777888877776 55 67777777777787
Q ss_pred EEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEc
Q 007762 327 YLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFL 378 (590)
Q Consensus 327 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 378 (590)
.+.+.. .+....+..|.++++|+.+++..+.+....+.+|.+|++|+.++.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 777776 566666677777888888888777777666677778888877753
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=1.1e-15 Score=141.66 Aligned_cols=154 Identities=24% Similarity=0.228 Sum_probs=110.6
Q ss_pred CcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762 325 LEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404 (590)
Q Consensus 325 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 404 (590)
.+.++.+++.+.. +|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.++...+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4556666665553 23322 26677777777777766677777788888888888888766666678888888888888
Q ss_pred CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc
Q 007762 405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS 484 (590)
Q Consensus 405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 484 (590)
|.+.+..+..|..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+++..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------~lp~~-~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT------------------------ELPRG-IERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------SCCTT-GGGCTTCSEEECCSSCCCCCCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc------------------------ccCcc-cccCCCCCEEECCCCcCCccCH
Confidence 8888666667788888888888888776 23333 5566777778888777776666
Q ss_pred ccccccCCCCEEECcCCcccCC
Q 007762 485 DWVDGLSQLSHLILGHNNLEGE 506 (590)
Q Consensus 485 ~~~~~l~~L~~L~L~~n~l~~~ 506 (590)
..|..+++|++|++++|++...
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCTT
T ss_pred HHHhCCCCCCEEEeeCCCccCC
Confidence 6677778888888888877744
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=4.7e-16 Score=140.66 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=103.3
Q ss_pred CCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEE
Q 007762 322 CVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIM 401 (590)
Q Consensus 322 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 401 (590)
+++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4556666666666653 22 4556667777777776543 223566778888888888888776677788888888888
Q ss_pred CCCCcCcCCCCcccCCCCCCcEEEcccCc-CCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCC
Q 007762 402 MPKNHLEGPIPVEFCQLDWLQILDISDNN-ISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLN 480 (590)
Q Consensus 402 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 480 (590)
+++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~------------------------~~~--~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT------------------------DIM--PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC------------------------CCG--GGGGCSSCCEEECTTBCCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc------------------------ccH--hhcCCCCCCEEECCCCCCc
Confidence 88888876667778888888888888886 43 222 2566677777777777777
Q ss_pred CCccccccccCCCCEEECcCCccc
Q 007762 481 GSISDWVDGLSQLSHLILGHNNLE 504 (590)
Q Consensus 481 ~~~~~~~~~l~~L~~L~L~~n~l~ 504 (590)
+. + .+..+++|++|++++|++.
T Consensus 173 ~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 173 DY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CC-T-TGGGCSSCCEEEECBC---
T ss_pred Ch-H-HhccCCCCCEEEeeCcccC
Confidence 43 3 5667777778887777765
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.66 E-value=3e-15 Score=151.01 Aligned_cols=141 Identities=19% Similarity=0.115 Sum_probs=63.9
Q ss_pred CCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCce
Q 007762 273 LPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWL 352 (590)
Q Consensus 273 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 352 (590)
+..++.+.+..+... .....+..+..++.+..... .++...+..+.+|+.+.+..+ +......+|.++.+|+.+
T Consensus 252 ~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 252 CTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp CSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccceeEEcCCCcce-eeccccccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 445555555443222 33334455555555544432 223333444555555555432 333333445555555555
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcE
Q 007762 353 QLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQI 423 (590)
Q Consensus 353 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 423 (590)
++..+ +......+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++..+- . .+..+|.++++|+.
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 55432 33233345555555555555443 333344455555555555554331 1 12334555555443
No 118
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=6.8e-15 Score=148.46 Aligned_cols=314 Identities=16% Similarity=0.116 Sum_probs=174.8
Q ss_pred CCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCcccc
Q 007762 65 ILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPL 144 (590)
Q Consensus 65 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l 144 (590)
|...+|.++.+|+.+.+..+ ++.....+|.+|++|+.+++.++ ++ .+....+.++++|+.+.+..+-. .+....|
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~--~i~~~aF 136 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLK--SIGVEAF 136 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCC--EECTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCcee--eecceee
Confidence 55567777777777777643 55455667777777777777654 43 56665677777777666554321 2222334
Q ss_pred ccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcC
Q 007762 145 FNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENN 224 (590)
Q Consensus 145 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l 224 (590)
.++..++... ...........|..+.+|+.+.+.++. . .++...|.++
T Consensus 137 ~~~~~~~~~~------------------------------~~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c 184 (394)
T 4fs7_A 137 KGCDFKEITI------------------------------PEGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGC 184 (394)
T ss_dssp TTCCCSEEEC------------------------------CTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTC
T ss_pred eccccccccc------------------------------CccccccchhhhcccCCCcEEecCCcc-c-eeccccccCC
Confidence 3333222111 111111223456777788888886543 2 4556666778
Q ss_pred CCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEE
Q 007762 225 TNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLD 304 (590)
Q Consensus 225 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 304 (590)
.+|+.+.+..+ +......++..+..|+.+.+..+... +....+. ..+|+.+.+.... +......+..+..++.+.
T Consensus 185 ~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 185 GKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDSF-TELGKSVFYGCTDLESIS 259 (394)
T ss_dssp TTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTTC-CEECSSTTTTCSSCCEEE
T ss_pred CCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCCc-eecccccccccccceeEE
Confidence 88888777654 33334456667777777766655322 1222222 4567777765432 223344566677777777
Q ss_pred ccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCccc
Q 007762 305 VTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLS 384 (590)
Q Consensus 305 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 384 (590)
+..+.. .+....+..+..++.+......+. ...|..+.+|+.+.+..+ +......+|.+|.+|+.+++.++ ++
T Consensus 260 ~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 260 IQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp ECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred cCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence 765532 344455555666666666544332 234555666666666543 33334455666666666666432 44
Q ss_pred ccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEccc
Q 007762 385 GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISD 428 (590)
Q Consensus 385 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 428 (590)
.....+|.+|++|+.+.+..+ +......+|..|++|+.+++..
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 344455666666666666544 3333445566666666666543
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.5e-16 Score=156.37 Aligned_cols=220 Identities=13% Similarity=0.065 Sum_probs=92.7
Q ss_pred CCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccc----cccCCccccCCCC
Q 007762 297 MKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHF----VGEIPQSLSKCFV 372 (590)
Q Consensus 297 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~l~~~~~ 372 (590)
|++|+.+++.+ .+. .++...|.+|++|+.++++.|.+....+..|..+.++..+....... .......|.+|..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 66666666665 554 55655565666666666666665555555555555554444433111 1111223334444
Q ss_pred CC-EEEccCCcc-cccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEEC
Q 007762 373 LE-GLFLNNNSL-SGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHL 449 (590)
Q Consensus 373 L~-~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l 449 (590)
|+ .+.+..... .......-....+++.+.+.++-...........+++|+.+++++|.++.+....|. +.+|+++++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 44 222222110 000000001122333333332211000000001244555555555444433333333 334444444
Q ss_pred cCccCCCCCCccccccCCCCc-EEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEE
Q 007762 450 SKNMLHGQLKRGTFFNYHSLV-TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLD 521 (590)
Q Consensus 450 ~~n~~~~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 521 (590)
.+| + ..++..+|.+|++|+ .+++.+ .++.+.+..|.+|++|+.+++++|+++...+..|.++++|+.++
T Consensus 258 ~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ccc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 443 2 244444455555555 555544 44433344455555555555555555433344455555555443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=3.5e-18 Score=179.42 Aligned_cols=201 Identities=21% Similarity=0.153 Sum_probs=89.0
Q ss_pred CCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCc-------------CCCccCccccCccccCcee-ccCccccc
Q 007762 296 NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNS-------------LEGHMFSRNFNLTNLKWLQ-LEGNHFVG 361 (590)
Q Consensus 296 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~-l~~~~~~~ 361 (590)
.++.|+.|++++|.+. .+|..+.. +++|+.|++++|. ..+..+..+..+++|+.|+ ++.+.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred cCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 3445555555555554 45544432 4455555544332 2233444555556666665 4443321
Q ss_pred cCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCC-CC
Q 007762 362 EIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC-FH 440 (590)
Q Consensus 362 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~ 440 (590)
.|+.+.+++|.++...+ ..|+.|++++|.+.+ +|. +..+++|+.|++++|.++ .+|.. ..
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 12222333333332111 124555555555543 333 555555555555555544 11211 11
Q ss_pred CCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCc-cccccccCCCCEEECcCCcccCCCcc---cccCCCC
Q 007762 441 PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLILGHNNLEGEVPV---QLCKLNQ 516 (590)
Q Consensus 441 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~ 516 (590)
+++|+.|++++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..+++|++|++++|++++..|. .+..+|+
T Consensus 485 l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred CCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 2233333333333322 33 2445555555555555555443 55555555555555555555543321 1223455
Q ss_pred CCEEE
Q 007762 517 LQLLD 521 (590)
Q Consensus 517 L~~L~ 521 (590)
|+.|+
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 55554
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=3.9e-16 Score=147.89 Aligned_cols=167 Identities=19% Similarity=0.255 Sum_probs=96.3
Q ss_pred CcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCC
Q 007762 325 LEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPK 404 (590)
Q Consensus 325 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 404 (590)
+..++++.+.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+++..+ +..+++|+.|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344444444444322 23445555555555555542 22 34455555555555555553332 55555666666666
Q ss_pred CcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc
Q 007762 405 NHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS 484 (590)
Q Consensus 405 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 484 (590)
|.+.+ ++. +.. ++|++|++++|.+++. +....+++|+.|++++|.++ .++ .+..+++|+.|++++|.+++.
T Consensus 95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKN-LNG-IPS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSC-CTT-CCC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCC-cCc-ccc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCcch--
Confidence 65553 222 112 5566666666665532 33334556666666666663 333 377788888888888888865
Q ss_pred ccccccCCCCEEECcCCcccCC
Q 007762 485 DWVDGLSQLSHLILGHNNLEGE 506 (590)
Q Consensus 485 ~~~~~l~~L~~L~L~~n~l~~~ 506 (590)
..+..+++|++|++++|+++..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 5677888888888888888754
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.7e-15 Score=133.28 Aligned_cols=137 Identities=23% Similarity=0.189 Sum_probs=93.2
Q ss_pred CCCCEEEccCCccc-ccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEEC
Q 007762 371 FVLEGLFLNNNSLS-GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHL 449 (590)
Q Consensus 371 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 449 (590)
++|+.|++++|.++ +.++..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~----------------- 84 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF----------------- 84 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC-----------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc-----------------
Confidence 45666666666655 34454555555666666666555533 44555555555555555554
Q ss_pred cCccCCCCCCccccccCCCCcEEEcCCCcCCCCc-cccccccCCCCEEECcCCcccCCCc---ccccCCCCCCEEECcCC
Q 007762 450 SKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLILGHNNLEGEVP---VQLCKLNQLQLLDLSNN 525 (590)
Q Consensus 450 ~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n 525 (590)
+.++.. +..+++|+.|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|
T Consensus 85 ------~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 85 ------GGLDML-AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ------SCCCHH-HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ------hHHHHH-HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 333333 666889999999999998643 2678889999999999999985544 47889999999999999
Q ss_pred ccCCCCccc
Q 007762 526 NLHGPIPPC 534 (590)
Q Consensus 526 ~l~~~~p~~ 534 (590)
++. .+|..
T Consensus 158 ~~~-~~~~~ 165 (168)
T 2ell_A 158 EDQ-EAPDS 165 (168)
T ss_dssp TSC-BCCSS
T ss_pred Chh-hcccc
Confidence 987 45644
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=1.6e-14 Score=144.88 Aligned_cols=265 Identities=11% Similarity=0.078 Sum_probs=137.6
Q ss_pred cCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcE
Q 007762 223 NNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQL 302 (590)
Q Consensus 223 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 302 (590)
.+..++.+.+.+. +......+|..+ +|+.+.+..+ ++ .++...+.. .+|+.+.+.. .++......|.+|++|+.
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3455555555442 333334445543 5666666654 43 344433332 3577777664 344344556777777777
Q ss_pred EEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCc
Q 007762 303 LDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS 382 (590)
Q Consensus 303 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 382 (590)
+++.+|.+. .++...|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ +......+|.+ .+|+.+.+. +.
T Consensus 185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 777777766 66666664 567777776633 54444555666666666666543 33233344444 455555552 23
Q ss_pred ccccCccccCCCCCccEEECCCCcCc-----CCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCC
Q 007762 383 LSGMIPRWLGNLTRLQHIMMPKNHLE-----GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQ 457 (590)
Q Consensus 383 ~~~~~~~~~~~l~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 457 (590)
++.....+|.+|++|+.+++.++.+. .....+|..|++|+.+++.+ .+ ..
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i------------------------~~ 313 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI------------------------RI 313 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC------------------------CE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce------------------------EE
Confidence 33334445555555555555544332 12233444444444444432 12 23
Q ss_pred CCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCC-CCCEEECcCCc
Q 007762 458 LKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLN-QLQLLDLSNNN 526 (590)
Q Consensus 458 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 526 (590)
++..+|.+|++|+.+++..+ ++.....+|.++ +|+.+++.+|.+....+..|..++ +++.|.+-.+.
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 44444555556666665433 443444555555 566666665555544444454443 45555555443
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=5.8e-15 Score=132.69 Aligned_cols=132 Identities=23% Similarity=0.268 Sum_probs=90.4
Q ss_pred CEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCc-ccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCc
Q 007762 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPV-EFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN 452 (590)
Q Consensus 374 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 452 (590)
+.++++++.++ .+|..+. .++++|++++|.+.+..+. .|..+++|++|++++|.+++.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------ 69 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI------------------ 69 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB------------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc------------------
Confidence 55666666664 3444333 2566666666666544432 255555566666655555432
Q ss_pred cCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762 453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 453 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
.+ ..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 70 -----~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 70 -----EP-NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp -----CT-TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred -----CH-hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 23 337777888888888888887777778888888888888888887778888888888888888888887654
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=6.1e-14 Score=140.67 Aligned_cols=252 Identities=12% Similarity=0.145 Sum_probs=122.2
Q ss_pred hhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhhcC
Q 007762 194 KFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGDVL 273 (590)
Q Consensus 194 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 273 (590)
.+|..+ +|+.+.+..+ +. .++...|.++ +|+.+.+.+ .+......+|..|++|+.+++.+|.++ .++...+. +
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~ 202 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-Y 202 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-T
T ss_pred hhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-e
Confidence 344443 5666666554 32 3444444443 466666654 344444455666666666666666555 44444444 4
Q ss_pred CCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCcee
Q 007762 274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQ 353 (590)
Q Consensus 274 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 353 (590)
++|+.+.+..+ ++......|.++++|+.+++..+ +. .++...|.+ .+|+.+.+. +.+.......|.++++|+.+.
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEE
Confidence 56666666533 33344445555666666665543 33 444444443 455555553 223333344455555555555
Q ss_pred ccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCC
Q 007762 354 LEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISG 433 (590)
Q Consensus 354 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 433 (590)
+.++.+.. +........+|.+|++|+.+.+.+ .+......+|..|++|+.+.+..+ ++.
T Consensus 278 l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 278 TYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp EESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred eCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 54443320 000022333445555555555542 233333444555555555555332 333
Q ss_pred CCCCCCCCCcccEEECcCccCCCCCCccccccCC-CCcEEEcCCCcC
Q 007762 434 SLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYH-SLVTLDLSYNRL 479 (590)
Q Consensus 434 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~ls~n~l 479 (590)
+....|...+|+.+++.+|.. ..++...|.+++ +++.|.+..+.+
T Consensus 337 I~~~aF~~~~L~~l~l~~n~~-~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNTGIKEVKVEGTTP-PQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSSCCCEEEECCSSC-CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCCCCCEEEEcCCCC-cccccccccCCCCCccEEEeCHHHH
Confidence 334444433555555555544 244444466663 567777766544
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.8e-15 Score=127.44 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=73.7
Q ss_pred CccEEECCCCcCc-CCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762 396 RLQHIMMPKNHLE-GPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474 (590)
Q Consensus 396 ~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 474 (590)
+|+.|++++|.+. +.+|..+..+++|++|++++|.+++. +....+++|++|++++|.+.+.++.. +..+++|+.|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEEEC
Confidence 3444444444443 23333444444444444444444432 22222334444444444443333332 566788888888
Q ss_pred CCCcCCCC-ccccccccCCCCEEECcCCcccCCCc---ccccCCCCCCEEECcC
Q 007762 475 SYNRLNGS-ISDWVDGLSQLSHLILGHNNLEGEVP---VQLCKLNQLQLLDLSN 524 (590)
Q Consensus 475 s~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~ 524 (590)
++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888753 34677888888888888888886554 4678888888888764
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=3.4e-17 Score=171.92 Aligned_cols=180 Identities=22% Similarity=0.218 Sum_probs=129.4
Q ss_pred ccccCceeccCccccccCCccccCCCCCCEEEccCCc-------------ccccCccccCCCCCccEEE-CCCCcCcCCC
Q 007762 346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS-------------LSGMIPRWLGNLTRLQHIM-MPKNHLEGPI 411 (590)
Q Consensus 346 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-L~~n~~~~~~ 411 (590)
+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.. +
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-L 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-H
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-h
Confidence 444555555555544 444445555555555554432 3344555566666666666 44432211 0
Q ss_pred Cc------ccC--CCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q 007762 412 PV------EFC--QLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSI 483 (590)
Q Consensus 412 ~~------~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 483 (590)
+. .+. ....|+.|++++|.+++ +|....+++|+.|++++|.++ .+|.. +..+++|+.|+|++|.+++ +
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC-C
Confidence 00 000 01258999999999996 455556889999999999996 78775 9999999999999999996 6
Q ss_pred cccccccCCCCEEECcCCcccCCC-cccccCCCCCCEEECcCCccCCCCc
Q 007762 484 SDWVDGLSQLSHLILGHNNLEGEV-PVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 484 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
| .+..+++|++|+|++|++++.. |..+..+++|+.|++++|++++.+|
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6 7999999999999999999776 9999999999999999999997655
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=9.1e-15 Score=131.40 Aligned_cols=129 Identities=26% Similarity=0.374 Sum_probs=102.1
Q ss_pred cEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCC
Q 007762 422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 501 (590)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 501 (590)
+.++++++.++. +|..+ ..++++|++++|.+.+..+...+..+++|+.|++++|.+++..|..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~-ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSS-CCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCc-CccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 456666666643 33222 2366777777777644333345888999999999999999888999999999999999999
Q ss_pred cccCCCcccccCCCCCCEEECcCCccCCCCccccccCCccccccCCCCCCC
Q 007762 502 NLEGEVPVQLCKLNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPNK 552 (590)
Q Consensus 502 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~ 552 (590)
++++..+..|..+++|+.|++++|++++.+|..|..++.+...+...++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999888888999999999999999999999999988876666666666544
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=5.4e-15 Score=129.98 Aligned_cols=138 Identities=22% Similarity=0.168 Sum_probs=114.3
Q ss_pred ccccCceeccCcccc-ccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEE
Q 007762 346 LTNLKWLQLEGNHFV-GEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQIL 424 (590)
Q Consensus 346 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 424 (590)
.++|++|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999997 67788889999999999999999866 788999999999999999997788888889999999
Q ss_pred EcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc---ccccccCCCCEEECcCC
Q 007762 425 DISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS---DWVDGLSQLSHLILGHN 501 (590)
Q Consensus 425 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~L~~n 501 (590)
++++|.+++.. ....+..+++|+.|++++|.+++..+ ..+..+++|++|++++|
T Consensus 101 ~Ls~N~l~~~~-----------------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDIS-----------------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSG-----------------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcch-----------------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999887321 11226677888888888888886554 47888888999999888
Q ss_pred cccCCCcc
Q 007762 502 NLEGEVPV 509 (590)
Q Consensus 502 ~l~~~~~~ 509 (590)
.+. .+|.
T Consensus 158 ~~~-~~~~ 164 (168)
T 2ell_A 158 EDQ-EAPD 164 (168)
T ss_dssp TSC-BCCS
T ss_pred Chh-hccc
Confidence 887 4444
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=129.42 Aligned_cols=128 Identities=24% Similarity=0.228 Sum_probs=104.8
Q ss_pred cEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCC
Q 007762 398 QHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYN 477 (590)
Q Consensus 398 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n 477 (590)
+.++++++.+. .+|..+. ++|+.|++++|.++........+++|+.|++++|.++ .++...|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCC
Confidence 57889999887 4565543 5899999999999844433334788999999999995 566566889999999999999
Q ss_pred cCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762 478 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 478 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
.+++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998888889999999999999999986666678889999999999999874
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3.6e-14 Score=125.87 Aligned_cols=133 Identities=26% Similarity=0.279 Sum_probs=91.2
Q ss_pred CCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCc
Q 007762 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN 452 (590)
Q Consensus 373 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 452 (590)
.+.++++++.++. +|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------- 65 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-------------------- 65 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------------------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce--------------------
Confidence 3455555555542 22222 245666666666655444444555556666666555554
Q ss_pred cCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762 453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 453 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
.++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 66 ----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 66 ----SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ----EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 3444446778889999999999987777778889999999999999986655567889999999999999987655
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3.5e-14 Score=127.51 Aligned_cols=108 Identities=28% Similarity=0.332 Sum_probs=72.0
Q ss_pred CccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762 396 RLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474 (590)
Q Consensus 396 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 474 (590)
+|++|++++|.+. .+|..|..+++|++|++++|.+++..+..+. +++|++|++++|.++ .++...|..+++|+.|+|
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEEC
Confidence 4555555555554 3344455555555555555555544443332 445555555555553 444445888999999999
Q ss_pred CCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762 475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEG 505 (590)
Q Consensus 475 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 505 (590)
++|.++...+..|..+++|++|++++|++..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999997777789999999999999999874
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1.4e-15 Score=164.74 Aligned_cols=177 Identities=22% Similarity=0.230 Sum_probs=85.2
Q ss_pred CCCcEEEccCceecccCCcccCCCCCCcEEEccCccccc--------ccchhhhcCCCCCcEEEccCCcCCCccCccccC
Q 007762 274 PGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTG--------EIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFN 345 (590)
Q Consensus 274 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 345 (590)
+.++.|++..+.+.. .+..+ ++.++++.+.+.+ .++...+..++.|+.|++++|.+.. ++..+..
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGG
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcC
Confidence 467777777777663 33332 3333333333221 1223334456677777777777663 4444556
Q ss_pred ccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEE
Q 007762 346 LTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILD 425 (590)
Q Consensus 346 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 425 (590)
+++|++|++++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+. .+|..|..+++|++|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 677777777777766 56666667777777777777766 55666667777777777777665 4566666777777777
Q ss_pred cccCcCCCCCCCCCCCC--cccEEECcCccCCCCCCc
Q 007762 426 ISDNNISGSLPSCFHPL--SIEHVHLSKNMLHGQLKR 460 (590)
Q Consensus 426 l~~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~ 460 (590)
|++|.+++.+|..+... .+..+++++|.+.+.+|.
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 77777665555444321 112344555555544443
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.5e-14 Score=124.27 Aligned_cols=128 Identities=21% Similarity=0.210 Sum_probs=74.1
Q ss_pred CCCCEEEccCCccc-ccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEE
Q 007762 371 FVLEGLFLNNNSLS-GMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVH 448 (590)
Q Consensus 371 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~ 448 (590)
++++.|++++|.++ +.++..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+. +++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444455544444 33444444455555555555554432 3444555555555555555443333332 45555555
Q ss_pred CcCccCCCCCCccccccCCCCcEEEcCCCcCCCCcc---ccccccCCCCEEECcC
Q 007762 449 LSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSIS---DWVDGLSQLSHLILGH 500 (590)
Q Consensus 449 l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~L~~ 500 (590)
+++|.+.+......+..+++|+.|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 555555331111337888999999999999986655 5788899999999863
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=2.3e-15 Score=163.13 Aligned_cols=220 Identities=22% Similarity=0.213 Sum_probs=122.9
Q ss_pred CCcccEEEccCCcCCCCCchhhhhcCCCC-----cEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCC
Q 007762 248 HKRLRLLDISNNNFRGHIPVEIGDVLPGL-----FSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGC 322 (590)
Q Consensus 248 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L-----~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 322 (590)
.+.++.|++.++.+. ..+..+.. ...| ..+++..|.+. ..+..+..++.|+.|++++|.+. .++..++ .+
T Consensus 172 ~~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l 246 (727)
T 4b8c_D 172 TPLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KY 246 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GC
T ss_pred CCccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CC
Confidence 356888999888876 34433322 2222 23333334444 56778899999999999999998 8888887 59
Q ss_pred CCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCccEEEC
Q 007762 323 VNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMM 402 (590)
Q Consensus 323 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 402 (590)
++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..|..+++|+.|+|
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEEC
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeC
Confidence 99999999999998 67888999999999999999999 77988999999999999999997 67878999999999999
Q ss_pred CCCcCcCCCCcccCCCCC-CcEEEcccCcCCCCCCCCCCCCcccEEECcCcc----CCCCCCc---cccccCCCCcEEEc
Q 007762 403 PKNHLEGPIPVEFCQLDW-LQILDISDNNISGSLPSCFHPLSIEHVHLSKNM----LHGQLKR---GTFFNYHSLVTLDL 474 (590)
Q Consensus 403 ~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~----~~~~~~~---~~~~~~~~L~~L~l 474 (590)
++|.+.+.+|..+..+.. +..+++++|.+++.+|. .|..|+++.|. ..+.++. ..+..+..+....+
T Consensus 324 ~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~l 398 (727)
T 4b8c_D 324 EGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVL 398 (727)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----C--------------------------------------
T ss_pred CCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-----ccceeEeecccccccccCCccccccchhhcccccceeee
Confidence 999999888877654422 23478999999877664 46677777661 1122221 11344555566667
Q ss_pred CCCcCC
Q 007762 475 SYNRLN 480 (590)
Q Consensus 475 s~n~l~ 480 (590)
++|-+.
T Consensus 399 s~Nil~ 404 (727)
T 4b8c_D 399 SYNTLC 404 (727)
T ss_dssp ---CCC
T ss_pred eccccc
Confidence 777664
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=7.3e-14 Score=123.63 Aligned_cols=106 Identities=21% Similarity=0.241 Sum_probs=73.3
Q ss_pred CCcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccc--cccccCCCCEEE
Q 007762 420 WLQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISD--WVDGLSQLSHLI 497 (590)
Q Consensus 420 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~ 497 (590)
+|++|++++|.+++. +....+++|++|++++|.++ .++...+..+++|+.|++++|.++ .+|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444432 22223445555555555553 455554678899999999999997 4554 788899999999
Q ss_pred CcCCcccCCCccc----ccCCCCCCEEECcCCccCC
Q 007762 498 LGHNNLEGEVPVQ----LCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 498 L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~ 529 (590)
+++|+++ .+|.. +..+++|+.||+++|++..
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999998 55654 8889999999999998763
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=4.8e-12 Score=127.53 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccc---ccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762 47 SLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNND---LRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT 123 (590)
Q Consensus 47 ~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~ 123 (590)
.|+.+.+..+ ++ .|...+|.+|.+|+.+.+..+. ++.....+|.+|.+|+.+.+..+ ++ .+....+..+.
T Consensus 65 ~L~sI~iP~s-vt----~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~ 137 (394)
T 4gt6_A 65 VLTSVQIPDT-VT----EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFHHCE 137 (394)
T ss_dssp CCCEEEECTT-CC----EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTTTCT
T ss_pred cCEEEEECCC-ee----EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhhhhc
Confidence 3666666543 22 3555666666667766666542 44344556666777776666544 33 45555666777
Q ss_pred CCcEEECcCCccccccCccccccCCCccEEEccC
Q 007762 124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKN 157 (590)
Q Consensus 124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~ 157 (590)
+|+.+.+..+.. .++...+..+..|+.+.+..
T Consensus 138 ~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 138 ELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TCCEEECCTTCC--EECTTTTTTCTTCCEEECCT
T ss_pred ccccccccceee--eecccceecccccccccccc
Confidence 777777654321 33445566666666665543
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=7.4e-13 Score=117.31 Aligned_cols=128 Identities=23% Similarity=0.220 Sum_probs=60.5
Q ss_pred cEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCceeccCccccccCCccccCCCCCCEEEccC
Q 007762 301 QLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNN 380 (590)
Q Consensus 301 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 380 (590)
+.++++++.+. .+|... .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34444444444 444322 23455555555555443333444445555555555554433333444455555555555
Q ss_pred CcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCC
Q 007762 381 NSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNIS 432 (590)
Q Consensus 381 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 432 (590)
|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555444444444555555555555554333333444555555555555444
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=1.4e-11 Score=124.10 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=68.0
Q ss_pred CccccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCc
Q 007762 364 PQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLS 443 (590)
Q Consensus 364 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 443 (590)
..+|.+|..|+.+.+.+.-. .....+|.+++.|+.+.+.. .+......+|..+.+|+.+++..+ +
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v------------ 322 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I------------ 322 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C------------
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c------------
Confidence 34555566666666544322 23344555566666666542 233233445555555555555432 2
Q ss_pred ccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECc
Q 007762 444 IEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLS 523 (590)
Q Consensus 444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 523 (590)
..+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++.... ..+..+.+|+.+.+.
T Consensus 323 ------------~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 323 ------------TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp ------------CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred ------------cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 2455556777777777777543 554555667777777777777665431 345566667776665
Q ss_pred CCcc
Q 007762 524 NNNL 527 (590)
Q Consensus 524 ~n~l 527 (590)
.+.+
T Consensus 387 ~~~~ 390 (394)
T 4gt6_A 387 PGSI 390 (394)
T ss_dssp ----
T ss_pred CCCE
Confidence 5543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.4e-15 Score=137.66 Aligned_cols=132 Identities=23% Similarity=0.295 Sum_probs=86.1
Q ss_pred ccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCC-CCcccEEECcCccCCCCCCccccccCCC
Q 007762 390 WLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFH-PLSIEHVHLSKNMLHGQLKRGTFFNYHS 468 (590)
Q Consensus 390 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 468 (590)
.+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++. +|..+. +++|+.|++++|.+++ ++ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS--GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC--ccccCCC
Confidence 45555666666666666553 34 55556666666666666652 232222 3556666666666633 43 2777888
Q ss_pred CcEEEcCCCcCCCCcc-ccccccCCCCEEECcCCcccCCCccc----------ccCCCCCCEEECcCCccCC
Q 007762 469 LVTLDLSYNRLNGSIS-DWVDGLSQLSHLILGHNNLEGEVPVQ----------LCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 469 L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~ 529 (590)
|+.|++++|.+++..+ ..+..+++|++|++++|++++..|.. +..+++|+.|| +|+++.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 8888888888885332 46778888888888888887665542 77888888886 777763
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=4.1e-13 Score=118.78 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=80.2
Q ss_pred cCCCCCCEEEccCCcccccCccccCCC-CCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCC-CCCCccc
Q 007762 368 SKCFVLEGLFLNNNSLSGMIPRWLGNL-TRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSC-FHPLSIE 445 (590)
Q Consensus 368 ~~~~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~ 445 (590)
..+.+|+.|++++|.++. ++. +..+ ++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+.. ..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 344555555555555542 222 2222 2555555555555532 34555555666666666555443333 2355666
Q ss_pred EEECcCccCCCCCCc-cccccCCCCcEEEcCCCcCCCCcccc----ccccCCCCEEECcCCccc
Q 007762 446 HVHLSKNMLHGQLKR-GTFFNYHSLVTLDLSYNRLNGSISDW----VDGLSQLSHLILGHNNLE 504 (590)
Q Consensus 446 ~L~l~~n~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~ 504 (590)
+|++++|.+ +.++. ..+..+++|+.|++++|.++ .+|.. +..+++|++|++++|...
T Consensus 92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666665 34554 23778899999999999998 45553 888999999999999876
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=3.4e-12 Score=111.90 Aligned_cols=108 Identities=26% Similarity=0.318 Sum_probs=81.1
Q ss_pred cEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCC
Q 007762 422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 501 (590)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 501 (590)
+.+++++|.++.. |..+ ..++++|++++|.++ .+++..|..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~i-p~~~-~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASV-PTGI-PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSC-CSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcc-CccC-CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4555555555532 2222 256666666666664 344444888899999999999999877778899999999999999
Q ss_pred cccCCCcccccCCCCCCEEECcCCccCCCCc
Q 007762 502 NLEGEVPVQLCKLNQLQLLDLSNNNLHGPIP 532 (590)
Q Consensus 502 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 532 (590)
++++..+..|..+++|+.|++++|++....+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997666678999999999999999986543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=7.5e-12 Score=110.07 Aligned_cols=106 Identities=23% Similarity=0.323 Sum_probs=77.7
Q ss_pred cEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCC
Q 007762 422 QILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 501 (590)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 501 (590)
+.++++++.+.. +|..+ +.+|+.|++++|.+. .+++..|..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~-~~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGI-PTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCc-CCCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 455555555542 22222 255666666666664 343344888899999999999999776677888999999999999
Q ss_pred cccCCCcccccCCCCCCEEECcCCccCCC
Q 007762 502 NLEGEVPVQLCKLNQLQLLDLSNNNLHGP 530 (590)
Q Consensus 502 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 530 (590)
++++..+..|..+++|+.|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99966555688999999999999999853
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=9.1e-15 Score=132.25 Aligned_cols=152 Identities=22% Similarity=0.199 Sum_probs=99.3
Q ss_pred cccCceeccCccccccCCc------cccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCC
Q 007762 347 TNLKWLQLEGNHFVGEIPQ------SLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDW 420 (590)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 420 (590)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+. .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444333 55666667777777776664 34 5666677777777777666 45555555667
Q ss_pred CcEEEcccCcCCCCCCCCCCCCcccEEECcCccCCCCCCc-cccccCCCCcEEEcCCCcCCCCccc----------cccc
Q 007762 421 LQILDISDNNISGSLPSCFHPLSIEHVHLSKNMLHGQLKR-GTFFNYHSLVTLDLSYNRLNGSISD----------WVDG 489 (590)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~----------~~~~ 489 (590)
|++|++++|.+++ ++....+++|+.|++++|.+. .++. ..+..+++|+.|++++|.+++..|. .+..
T Consensus 95 L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CCccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 7777777777764 233333567777777777774 3332 3478889999999999999766554 3788
Q ss_pred cCCCCEEECcCCcccC
Q 007762 490 LSQLSHLILGHNNLEG 505 (590)
Q Consensus 490 l~~L~~L~L~~n~l~~ 505 (590)
+++|++|| ++.++.
T Consensus 173 l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 173 LPNLKKLD--GMPVDV 186 (198)
T ss_dssp CSSCSEEC--CGGGTT
T ss_pred CCCcEEEC--CcccCH
Confidence 99999997 777764
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=2e-11 Score=106.95 Aligned_cols=107 Identities=25% Similarity=0.304 Sum_probs=70.7
Q ss_pred CCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCc
Q 007762 373 LEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKN 452 (590)
Q Consensus 373 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 452 (590)
.+.+++++|.++. +|..+. ++|+.|+|++|.+.+..+..|..+++|++|++++|.++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------- 67 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-------------------- 67 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------------------
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC--------------------
Confidence 3556666666552 333332 56666666666666555556666666666666666655
Q ss_pred cCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccCC
Q 007762 453 MLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE 506 (590)
Q Consensus 453 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 506 (590)
.++...|..+++|+.|+|++|.+++..+..|..+++|++|+|++|+++..
T Consensus 68 ----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 68 ----VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ----ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 34444466778888888888888876666788888888888888888744
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.9e-11 Score=107.43 Aligned_cols=105 Identities=26% Similarity=0.294 Sum_probs=70.7
Q ss_pred CEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccCCCCCCcEEEcccCcCCCCCCCCCCCCcccEEECcCcc
Q 007762 374 EGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFCQLDWLQILDISDNNISGSLPSCFHPLSIEHVHLSKNM 453 (590)
Q Consensus 374 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 453 (590)
+.++++++.++ .+|..+. ++|+.|++++|.+.+..|..|..+++|++|++++|.++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------------------- 70 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT--------------------- 70 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC---------------------
Confidence 45666666664 3444333 56666777776666655666666666666666666665
Q ss_pred CCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCcccC
Q 007762 454 LHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 505 (590)
Q Consensus 454 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 505 (590)
.++...|..+++|+.|+|++|.+++..+..|..+++|++|++++|++..
T Consensus 71 ---~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 71 ---AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ---ccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 3444446677788888888888886666667888888888888888873
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=6.2e-10 Score=111.52 Aligned_cols=317 Identities=11% Similarity=0.054 Sum_probs=196.0
Q ss_pred CCCCCCCCCeEeCcCCcCccccccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCcc
Q 007762 14 GFPHFKSLELLDMECTRIALNTSFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWC 93 (590)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 93 (590)
.|....+|+.+.+... -..+.+..+.+|.+|+.++|..+ ++ .+...+|.++ +|+.+.+..+ +......+
T Consensus 41 ~~~~~~~i~~v~ip~~----vt~Ig~~aF~~C~~L~~I~lp~~-v~----~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~a 109 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG----ITSIGEANFNSCYNMTKVTVAST-VT----SIGDGAFADT-KLQSYTGMER-VKKFGDYV 109 (379)
T ss_dssp TGGGGGGCSEEEECTT----EEEECTTTTTTCTTCCEEEECTT-CC----EECTTTTTTC-CCCEEEECTT-CCEECTTT
T ss_pred ccccccCCEEEEeCCC----ccChHHHHhhCCCCCCEEEeCCc-ce----EechhhhcCC-CCceEECCce-eeEeccce
Confidence 4667778888888743 25566666668899999999765 33 4777888887 6888887654 44345566
Q ss_pred ccCCCCCcEEEccccccccccCCCCccCCCCCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCC
Q 007762 94 MANMTSLRILYVSSNQLTGSISSSPLVHLTSIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAP 173 (590)
Q Consensus 94 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~ 173 (590)
|..+ +|+.+.+.++. + .+....+.++ +|+.+.+..+- . .+....+..+..++.+.+............
T Consensus 110 F~~~-~L~~i~lp~~~-~-~i~~~~F~~~-~l~~~~~~~~v-~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~------ 177 (379)
T 4h09_A 110 FQGT-DLDDFEFPGAT-T-EIGNYIFYNS-SVKRIVIPKSV-T-TIKDGIGYKAENLEKIEVSSNNKNYVAENY------ 177 (379)
T ss_dssp TTTC-CCSEEECCTTC-C-EECTTTTTTC-CCCEEEECTTC-C-EECSCTTTTCTTCCEEEECTTCSSEEEETT------
T ss_pred eccC-CcccccCCCcc-c-cccccccccc-eeeeeecccee-e-ccccchhcccccccccccccccceeecccc------
Confidence 7665 79999887653 3 4555456554 56666554432 2 344556778888888776554322111000
Q ss_pred CcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccE
Q 007762 174 NFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRL 253 (590)
Q Consensus 174 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 253 (590)
............+.....+..+.+..... .+....+..+.+|+.+.+..+ +......++..+..|+.
T Consensus 178 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~ 244 (379)
T 4h09_A 178 ----------VLYNKNKTILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDE 244 (379)
T ss_dssp ----------EEEETTSSEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCE
T ss_pred ----------eecccccceecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceE
Confidence 00000011112233344555555544321 222333456777777777543 33333455677778888
Q ss_pred EEccCCcCCCCCchhhhhcCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCC
Q 007762 254 LDISNNNFRGHIPVEIGDVLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNN 333 (590)
Q Consensus 254 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 333 (590)
+.+..+ ++ .+....+..+.+|+.+.+..+ ++......|..|++|+.+.+.++.+. .++...|.+|.+|+.+.+..+
T Consensus 245 i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 245 IAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp EEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT
T ss_pred EEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc
Confidence 888665 43 444445555778888887644 33344556788888888888877776 778888888888888888754
Q ss_pred cCCCccCccccCccccCceeccCccccccCCccccCCCC
Q 007762 334 SLEGHMFSRNFNLTNLKWLQLEGNHFVGEIPQSLSKCFV 372 (590)
Q Consensus 334 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 372 (590)
+......+|.++.+|+.+.+..+ +......+|.+|..
T Consensus 321 -l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 321 -LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp -CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred -ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 55555677888888888888654 44344566766643
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=9e-10 Score=110.30 Aligned_cols=303 Identities=11% Similarity=0.098 Sum_probs=204.0
Q ss_pred cCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCccCCC
Q 007762 44 SMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPLVHLT 123 (590)
Q Consensus 44 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~ 123 (590)
...+|+.+.+...- + +|...+|.+|.+|+.+++..+ ++.....+|.++ +|+.+.+..+ ++ .+....+..+
T Consensus 44 ~~~~i~~v~ip~~v-t----~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~- 113 (379)
T 4h09_A 44 DRDRISEVRVNSGI-T----SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT- 113 (379)
T ss_dssp GGGGCSEEEECTTE-E----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-
T ss_pred cccCCEEEEeCCCc-c----ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-
Confidence 55789999997653 2 577899999999999999865 665667888887 6888887754 44 6777677765
Q ss_pred CCcEEECcCCccccccCccccccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCccc
Q 007762 124 SIEELHLSNNHFQIPISLEPLFNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLE 203 (590)
Q Consensus 124 ~L~~L~ls~n~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 203 (590)
+|+.+.+..+-. .+....+.++ +++.+.+..+ ++.+ ....+..+..++
T Consensus 114 ~L~~i~lp~~~~--~i~~~~F~~~-~l~~~~~~~~------------------v~~i-----------~~~~f~~~~~l~ 161 (379)
T 4h09_A 114 DLDDFEFPGATT--EIGNYIFYNS-SVKRIVIPKS------------------VTTI-----------KDGIGYKAENLE 161 (379)
T ss_dssp CCSEEECCTTCC--EECTTTTTTC-CCCEEEECTT------------------CCEE-----------CSCTTTTCTTCC
T ss_pred CcccccCCCccc--cccccccccc-eeeeeeccce------------------eecc-----------ccchhccccccc
Confidence 899999976532 2343455554 4555544332 1111 112233444555
Q ss_pred EEEcCCCcCcc------------ccchHHhhcCCCCcEEEccCCCCCCCCcCCCCCCCcccEEEccCCcCCCCCchhhhh
Q 007762 204 YVDLSHMKMNG------------EFPTWLLENNTNLESLFLVNDSLAGPFRLPIHSHKRLRLLDISNNNFRGHIPVEIGD 271 (590)
Q Consensus 204 ~L~ls~~~~~~------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 271 (590)
.+.+....... .... .+..+..+..+.+.... .......+..+..|+.+.+..+ +. .+....+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~ 237 (379)
T 4h09_A 162 KIEVSSNNKNYVAENYVLYNKNKTILE-SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFY 237 (379)
T ss_dssp EEEECTTCSSEEEETTEEEETTSSEEE-ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTT
T ss_pred ccccccccceeecccceecccccceec-cccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEcccccc
Confidence 55444332110 0011 12344556666554432 2223455677888999998765 33 34444444
Q ss_pred cCCCCcEEEccCceecccCCcccCCCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccccCccccCc
Q 007762 272 VLPGLFSLNISMNALDGSIPSSFGNMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRNFNLTNLKW 351 (590)
Q Consensus 272 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 351 (590)
.+..|+.+.+..+ ++......+..+..|+.+.+..+ +. .++...+.+|.+|+.+.+..+.+.......|.++.+|+.
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 5889999999766 44455667888999999999654 54 777888888999999999988888777888999999999
Q ss_pred eeccCccccccCCccccCCCCCCEEEccCCcccccCccccCCCCCc
Q 007762 352 LQLEGNHFVGEIPQSLSKCFVLEGLFLNNNSLSGMIPRWLGNLTRL 397 (590)
Q Consensus 352 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L 397 (590)
+.+..+ +......+|.+|.+|+.+.+..+ ++.....+|.++..+
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 999754 55455678999999999999654 555556678777543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=8.8e-13 Score=130.96 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=36.2
Q ss_pred ccCCCCcEEEcCCCcCCCC----ccccccccCCCCEEECcCCcccCC----CcccccCCCCCCEEECcCCccCC
Q 007762 464 FNYHSLVTLDLSYNRLNGS----ISDWVDGLSQLSHLILGHNNLEGE----VPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 464 ~~~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
..+++|++|+|++|.+++. ++..+...++|++|+|++|.+++. ++..+...++|+.|++++|+|++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 4455666666666666532 233445555666666666666532 22333445666666666666654
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=3.1e-12 Score=126.99 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=74.0
Q ss_pred CCCcEEEccCceecccCCc----ccC-CCCCCcEEEccCcccccccchhhhcCCCCCcEEEccCCcCCCccCccc-----
Q 007762 274 PGLFSLNISMNALDGSIPS----SFG-NMKFLQLLDVTNNQLTGEIPEHLAVGCVNLEYLALSNNSLEGHMFSRN----- 343 (590)
Q Consensus 274 ~~L~~L~L~~n~~~~~~~~----~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~----- 343 (590)
+.|+.|++++|.++..... .+. ..+.|++|++++|.+.+.....+...+++|++|++++|.+.+.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4555555555555422111 111 124566666666665533333333334456666666665543222222
Q ss_pred cCccccCceeccCcccccc----CCccccCCCCCCEEEccCCcccccC----ccccCCCCCccEEECCCCcCcCCC----
Q 007762 344 FNLTNLKWLQLEGNHFVGE----IPQSLSKCFVLEGLFLNNNSLSGMI----PRWLGNLTRLQHIMMPKNHLEGPI---- 411 (590)
Q Consensus 344 ~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~~~~~~---- 411 (590)
...++|++|++++|.++.. +...+..+++|++|++++|.+++.. ...+...++|++|+|++|.+.+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1234555555555555421 1222344555666666666554321 233444455666666655554321
Q ss_pred CcccCCCCCCcEEEcccCcCC
Q 007762 412 PVEFCQLDWLQILDISDNNIS 432 (590)
Q Consensus 412 ~~~~~~l~~L~~L~l~~n~l~ 432 (590)
...+...++|++|++++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 122333455555555555544
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=3.8e-10 Score=111.56 Aligned_cols=105 Identities=22% Similarity=0.144 Sum_probs=86.6
Q ss_pred cEEEcccC-cCCCCCCCCCCCCcccEEECcC-ccCCCCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECc
Q 007762 422 QILDISDN-NISGSLPSCFHPLSIEHVHLSK-NMLHGQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 499 (590)
Q Consensus 422 ~~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~ 499 (590)
..++++++ .+++++ ......+|+.|+|++ |.+. .++...|.++++|+.|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip-~l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTT-TSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccC-CCCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 888544 444567899999996 8884 6666669999999999999999998888899999999999999
Q ss_pred CCcccCCCcccccCCCCCCEEECcCCccCC
Q 007762 500 HNNLEGEVPVQLCKLNQLQLLDLSNNNLHG 529 (590)
Q Consensus 500 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 529 (590)
+|++++..+..+..++ |+.|++.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999966555666555 9999999999985
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=6.9e-10 Score=109.70 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=89.1
Q ss_pred cEEECCCC-cCcCCCCcccCCCCCCcEEEccc-CcCCCCCCCCC-CCCcccEEECcCccCCCCCCccccccCCCCcEEEc
Q 007762 398 QHIMMPKN-HLEGPIPVEFCQLDWLQILDISD-NNISGSLPSCF-HPLSIEHVHLSKNMLHGQLKRGTFFNYHSLVTLDL 474 (590)
Q Consensus 398 ~~L~L~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 474 (590)
..++++++ .+. .+|. +..+++|+.|+|++ |.+.+..+..+ .+++|+.|+|++|.+++ +++..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeC
Confidence 35788888 787 4777 99999999999996 99998877665 48899999999999965 55555999999999999
Q ss_pred CCCcCCCCccccccccCCCCEEECcCCcccCC
Q 007762 475 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGE 506 (590)
Q Consensus 475 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 506 (590)
++|++++..+..|..++ |+.|+|.+|++...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999977777777666 99999999999843
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=2e-09 Score=105.82 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=27.6
Q ss_pred ccCCCCCCEEEccCCcccccCccccCCCCCccEEECCCCcCcCCCCcccC--CCCCCcEEEcc
Q 007762 367 LSKCFVLEGLFLNNNSLSGMIPRWLGNLTRLQHIMMPKNHLEGPIPVEFC--QLDWLQILDIS 427 (590)
Q Consensus 367 l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~l~ 427 (590)
+..++.|+.|++++|.-. .++. +. +++|++|++..+.+.......+. .+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 344556666666555211 1111 22 55666666665554322222222 45666666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=7.8e-09 Score=101.57 Aligned_cols=142 Identities=19% Similarity=0.150 Sum_probs=69.5
Q ss_pred cccCCCCCcEEEeecccccccCCccccCCCCCcEEEccccccccccCCCCc--cCCCCCcEEECcC--CccccccCc---
Q 007762 69 GLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSNQLTGSISSSPL--VHLTSIEELHLSN--NHFQIPISL--- 141 (590)
Q Consensus 69 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l--~~l~~L~~L~ls~--n~~~~~~~~--- 141 (590)
.+..+++|+.|++++|.-. .++. +. +++|++|++..|.+...... .+ ..+++|++|+|+. +...+....
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 3455666777777665211 2222 22 56677777766655422111 12 2466677766642 111111100
Q ss_pred -ccc--ccCCCccEEEccCCcccccccCCCCCCCCCcccceEeccCCCCCCCcCChhccCCCcccEEEcCCCcCccccch
Q 007762 142 -EPL--FNHSRLKVFWAKNNEINAEITQSPSLTAPNFQLSRLSLSSGYGDGVIFPKFLYHQHDLEYVDLSHMKMNGEFPT 218 (590)
Q Consensus 142 -~~l--~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 218 (590)
..+ ..+++|+.|++.+|.+....... +. ....+++|++|+++.|.+.+..+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~------------------------la-~a~~~~~L~~LdLs~n~L~d~G~~ 297 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEM------------------------FL-ESDILPQLETMDISAGVLTDEGAR 297 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHH------------------------HH-HCSSGGGCSEEECCSSCCBHHHHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHH------------------------HH-hCccCCCCCEEECCCCCCChHHHH
Confidence 111 24667777777766654321110 00 001345677777777666544333
Q ss_pred HHh---hcCCCCcEEEccCCCCCC
Q 007762 219 WLL---ENNTNLESLFLVNDSLAG 239 (590)
Q Consensus 219 ~~~---~~l~~L~~L~l~~~~~~~ 239 (590)
.+. ..+++|+.|+++.|.+++
T Consensus 298 ~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 298 LLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHhhcccCCcceEEECCCCcCCH
Confidence 332 345677777777766554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=3.8e-09 Score=93.65 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=64.1
Q ss_pred cCCCCcEEecCCC-CCCCCCCCCCcccccCCCCCcEEEeeccccccc----CCccccCCCCCcEEEccccccccc----c
Q 007762 44 SMPSLKYLSLSDS-TLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS----LPWCMANMTSLRILYVSSNQLTGS----I 114 (590)
Q Consensus 44 ~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~ 114 (590)
..+.|++|+|++| .+++.+.......+...++|++|+|++|.+.+. +...+...+.|++|++++|.|... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4566666666666 665544334445555566666666666666532 233344456666666666666521 2
Q ss_pred CCCCccCCCCCcEEEC--cCCcccccc---CccccccCCCccEEEccCCccc
Q 007762 115 SSSPLVHLTSIEELHL--SNNHFQIPI---SLEPLFNHSRLKVFWAKNNEIN 161 (590)
Q Consensus 115 ~~~~l~~l~~L~~L~l--s~n~~~~~~---~~~~l~~l~~L~~l~l~~~~~~ 161 (590)
.. .+...++|++|++ ++|.+.... -...+...+.|+.|++++|.+.
T Consensus 114 ~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 22 3455566666666 556654221 1123444566777777666654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=1.1e-08 Score=90.71 Aligned_cols=122 Identities=19% Similarity=0.132 Sum_probs=94.3
Q ss_pred CCCCCCCCCCeEeCcCC-cCcccc--ccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccccccc
Q 007762 13 QGFPHFKSLELLDMECT-RIALNT--SFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS 89 (590)
Q Consensus 13 ~~~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 89 (590)
.++...+.|++|++++| .+.-.+ .+...+. ..++|++|+|++|.+++.+.......+...++|++|+|++|.|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 35778999999999998 662221 2344455 6789999999999998766555566777888999999999999863
Q ss_pred ----CCccccCCCCCcEEEc--cccccccc----cCCCCccCCCCCcEEECcCCccc
Q 007762 90 ----LPWCMANMTSLRILYV--SSNQLTGS----ISSSPLVHLTSIEELHLSNNHFQ 136 (590)
Q Consensus 90 ----~~~~~~~l~~L~~L~l--s~n~l~~~----~~~~~l~~l~~L~~L~ls~n~~~ 136 (590)
+..++...+.|++|++ ++|.++.. +.. .+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 4567778899999999 88988732 222 4566789999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=1.5e-07 Score=87.49 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=19.6
Q ss_pred cCCCCcEEecCCCCCCCCCCCCC--cccccCCCCCcEEEeeccccc
Q 007762 44 SMPSLKYLSLSDSTLGTNSSKIL--DRGLCSLVHLQELYIYNNDLR 87 (590)
Q Consensus 44 ~l~~L~~L~L~~~~~~~~~~~~~--~~~l~~l~~L~~L~L~~n~i~ 87 (590)
.+++|+.|+|++|.+++ +. +..+..+++|++|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~----l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYR----LDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCC----CGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCC----CccchhHHhhCCCCCEEECCCCccC
Confidence 45556666666555543 21 122334555555555555554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=8.1e-07 Score=76.36 Aligned_cols=84 Identities=13% Similarity=0.120 Sum_probs=49.5
Q ss_pred CCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeeccc-ccccCCccccCC----CCCcEEEccccc-cccccCCCCc
Q 007762 46 PSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNND-LRGSLPWCMANM----TSLRILYVSSNQ-LTGSISSSPL 119 (590)
Q Consensus 46 ~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~~~~~l 119 (590)
.+|++|++++|.+++.++ ..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. ++..--. .+
T Consensus 61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-AL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HG
T ss_pred ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HH
Confidence 356777777777665222 345667777777777774 554333344442 367777777764 5532112 35
Q ss_pred cCCCCCcEEECcCCc
Q 007762 120 VHLTSIEELHLSNNH 134 (590)
Q Consensus 120 ~~l~~L~~L~ls~n~ 134 (590)
.++++|++|++++|.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 567777777777765
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=3.3e-06 Score=78.41 Aligned_cols=57 Identities=26% Similarity=0.250 Sum_probs=28.1
Q ss_pred cccCCCCcEEEcCCCcCCCCccccccccC--CCCEEECcCCcccCCCc-------ccccCCCCCCEEE
Q 007762 463 FFNYHSLVTLDLSYNRLNGSISDWVDGLS--QLSHLILGHNNLEGEVP-------VQLCKLNQLQLLD 521 (590)
Q Consensus 463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~ 521 (590)
+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|++.+..| ..+..+|+|+.||
T Consensus 192 ~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 192 VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 34455566666666655543 1122222 55566666665554333 2244555555544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=1.7e-06 Score=74.35 Aligned_cols=83 Identities=10% Similarity=0.035 Sum_probs=39.7
Q ss_pred ccCceeccCccccccCCccccCCCCCCEEEccCCc-ccccCccccCCC----CCccEEECCCCc-CcCCCCcccCCCCCC
Q 007762 348 NLKWLQLEGNHFVGEIPQSLSKCFVLEGLFLNNNS-LSGMIPRWLGNL----TRLQHIMMPKNH-LEGPIPVEFCQLDWL 421 (590)
Q Consensus 348 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~l~~L 421 (590)
+|+.|++++|.++...-..+..|++|+.|++++|. +++.....+..+ ++|++|+|++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555555555443333344455555555555553 443332333332 345555555553 443333334455555
Q ss_pred cEEEcccCc
Q 007762 422 QILDISDNN 430 (590)
Q Consensus 422 ~~L~l~~n~ 430 (590)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.59 E-value=9.6e-06 Score=71.09 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=56.2
Q ss_pred cCCCCcEEecCCC-CCCCCCCCCCcccccCCCCCcEEEeeccccccc----CCccccCCCCCcEEEccccccccc----c
Q 007762 44 SMPSLKYLSLSDS-TLGTNSSKILDRGLCSLVHLQELYIYNNDLRGS----LPWCMANMTSLRILYVSSNQLTGS----I 114 (590)
Q Consensus 44 ~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~ 114 (590)
.-+.|+.|+|+++ .|.+.+.....+++.....|++|+|++|.+.+. +..++...+.|++|+|+.|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666653 555444444445555555666666666665542 223333445666666666665421 1
Q ss_pred CCCCccCCCCCcEEECcCCc---cccc---cCccccccCCCccEEEccCCc
Q 007762 115 SSSPLVHLTSIEELHLSNNH---FQIP---ISLEPLFNHSRLKVFWAKNNE 159 (590)
Q Consensus 115 ~~~~l~~l~~L~~L~ls~n~---~~~~---~~~~~l~~l~~L~~l~l~~~~ 159 (590)
.. .+..-+.|++|+++++. +... .-...+..-+.|+.++++.+.
T Consensus 119 a~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 11 23344556666665432 2110 011234445566666665544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=2.6e-05 Score=68.29 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=88.0
Q ss_pred CCCCCCCCCeEeCcCC-cCcccc--ccchHhhhcCCCCcEEecCCCCCCCCCCCCCcccccCCCCCcEEEeecccccc--
Q 007762 14 GFPHFKSLELLDMECT-RIALNT--SFLQIISESMPSLKYLSLSDSTLGTNSSKILDRGLCSLVHLQELYIYNNDLRG-- 88 (590)
Q Consensus 14 ~~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-- 88 (590)
.+.+-+.|+.|+|+++ .|.-.+ .+.+.+. .-+.|+.|+|++|.+++.+.....+.+...+.|++|+|++|.|.+
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 4456788999999985 442111 2445555 567899999999999987777777888888999999999999975
Q ss_pred --cCCccccCCCCCcEEEcccc---cccc----ccCCCCccCCCCCcEEECcCCccc
Q 007762 89 --SLPWCMANMTSLRILYVSSN---QLTG----SISSSPLVHLTSIEELHLSNNHFQ 136 (590)
Q Consensus 89 --~~~~~~~~l~~L~~L~ls~n---~l~~----~~~~~~l~~l~~L~~L~ls~n~~~ 136 (590)
.+..++...+.|++|+++++ .+.. .+.. .+..-+.|+.|+++.+.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCcc
Confidence 33455666778999999865 3331 1222 4566688999999887653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.0012 Score=53.85 Aligned_cols=56 Identities=25% Similarity=0.243 Sum_probs=29.1
Q ss_pred EEEcCCCcCC-CCccccccccCCCCEEECcCCcccCCCcccccCCCCCCEEECcCCccC
Q 007762 471 TLDLSYNRLN-GSISDWVDGLSQLSHLILGHNNLEGEVPVQLCKLNQLQLLDLSNNNLH 528 (590)
Q Consensus 471 ~L~ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 528 (590)
.++.++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23333332 34556666666665444444555566666666666553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.35 E-value=0.0077 Score=49.03 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=38.3
Q ss_pred EEECcCccCC-CCCCccccccCCCCcEEEcCCCcCCCCccccccccCCCCEEECcCCccc
Q 007762 446 HVHLSKNMLH-GQLKRGTFFNYHSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 504 (590)
Q Consensus 446 ~L~l~~n~~~-~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (590)
.++.+++.++ ..+|.. + .++|+.|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555552 144433 2 136888888888888766777888888888888888765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.03 E-value=2.5 Score=32.05 Aligned_cols=20 Identities=5% Similarity=-0.011 Sum_probs=11.0
Q ss_pred ccCCCCCCCCCCCCeEeCcC
Q 007762 9 VLRGQGFPHFKSLELLDMEC 28 (590)
Q Consensus 9 ~i~~~~~~~~~~L~~L~l~~ 28 (590)
+|...+|.+|..|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQP 29 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECT
T ss_pred EecHHHhcCCCCCcEEEcCC
Confidence 34445555555555555553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.92 E-value=5 Score=30.31 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=26.4
Q ss_pred CCcccccCCCCCcEEEeecccccccCCccccCCCCCcEEEcccc
Q 007762 65 ILDRGLCSLVHLQELYIYNNDLRGSLPWCMANMTSLRILYVSSN 108 (590)
Q Consensus 65 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n 108 (590)
|...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+...
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 55566666666666666664 44355566666666666666543
Done!