BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007763
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr-
Ring (Triad) Motif
Length = 60
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 289 WILANSKPCPRCKRPIEKNQGCMHMTC-TPPCKFEFCWLCLGQWSDHGERTGGFYACNRY 347
WI AN+K CP+C IEK+ GC HM C CK EFCW+CLG W HG +Y CNRY
Sbjct: 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS---AWYNCNRY 57
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTAI--NDGPGCLMLRC 184
C IC EN ++ CGH C+SC TA +DG GC RC
Sbjct: 29 CKICAENDKDVKI--EPCGHLMCTSCLTAWQESDGQGCPFCRC 69
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTA 172
EE+TC IC E L+ CGH FC +C TA
Sbjct: 18 EEVTCPICLELLTQP--LSLDCGHSFCQACLTA 48
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTAI--NDGPGCLMLRC 184
C IC EN ++ CGH C+SC TA +DG GC RC
Sbjct: 341 CKICAENDKDVKI--EPCGHLMCTSCLTAWQESDGQGCPFCRC 381
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWT------AINDGPG-CLMLRCPDP 187
EE+TC IC E ++A C H FC +C T DG G C + R P P
Sbjct: 18 EEVTCPICLELLKEP--VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMI 198
EE+ C IC + + + CGH FC C T I + C +C P C +V ++ I
Sbjct: 19 EEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGE-TSCGFFKC--PLCKTSVRKNAI 72
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCP 185
EE+ C IC + + + CGH FC C T I + C +CP
Sbjct: 19 EEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGE-TSCGFFKCP 61
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTAI--NDGPGCLMLRC 184
C IC EN ++ CGH C+SC T+ ++G GC RC
Sbjct: 30 CKICAENDKDVKI--EPCGHLMCTSCLTSWQESEGQGCPFCRC 70
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 59/169 (34%)
Query: 142 MTCGICFENYP----SDRLLAAA-CGHPFCSSCW-TAINDGPGCLMLRCPDPSCGAAVGQ 195
++C IC + Y + RL+ + CGH FCS C ++ + C P+C +
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTC-------PTCRKKINH 60
Query: 196 DMIYLLSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYS 255
+Y+ +I S T CP C +V +G V+ C +
Sbjct: 61 K------------RYHPIYIGS------GTVSCPI--CMDGYSEIVQNGRLIVSTECGHV 100
Query: 256 FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPI 304
FC C ++ L N+ CP C++ I
Sbjct: 101 FCSQCLRDS--------------------------LKNANTCPTCRKKI 123
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTA-INDGPGCLMLRCP 185
C IC E+ PS+ +A C H FC C T I P C + + P
Sbjct: 8 CPICLED-PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTAI--NDGPGCLMLRC 184
C IC EN ++ CGH C+SC T+ ++G GC RC
Sbjct: 335 CKICAENDKDVKI--EPCGHLMCTSCLTSWQESEGQGCPFCRC 375
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTAI--NDGPGCLMLRC 184
C IC EN ++ CGH C+SC T+ ++G GC RC
Sbjct: 337 CKICAENDKDVKI--EPCGHLMCTSCLTSWQESEGQGCPFCRC 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTAI--NDGPGCLMLRC 184
C IC EN ++ CGH C+SC T+ ++G GC RC
Sbjct: 335 CKICAENDKDVKI--EPCGHLMCTSCLTSWQESEGQGCPFCRC 375
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTAI--NDGPGCLMLRC 184
C IC EN ++ CGH C+SC T+ ++G GC RC
Sbjct: 337 CKICAENDKDVKI--EPCGHLMCTSCLTSWQESEGQGCPFCRC 377
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTAIN 174
EE+TC IC E L+ CGH C +C T N
Sbjct: 11 EEVTCPICLELLTEP--LSLDCGHSLCRACITVSN 43
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 142 MTCGICFENYPSDRLLAAACGHPFCSSC 169
+ CGICFE Y + ++ C H +CS C
Sbjct: 23 LRCGICFE-YFNIAMIIPQCSHNYCSLC 49
>pdb|2CT7|A Chain A, Solution Structure Of The Ibr Domain Of The Ring Finger
Protein 31 Protein
Length = 86
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 202 SSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNC 260
SS +++ + + K WC C + F+ + TC +C +FC C
Sbjct: 2 SSGSSGALFHKKLTEGVLMRDPKFLWCAQ--CSFG--FIYEREQLEATCPQCHQTFCVRC 57
Query: 261 T---EEAHRPVDCDTVAKWVLKNSAES 284
EE HR C+ W NS S
Sbjct: 58 KRQWEEQHRGRSCEDFQNWKRMNSGPS 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,609,667
Number of Sequences: 62578
Number of extensions: 788461
Number of successful extensions: 1757
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1737
Number of HSP's gapped (non-prelim): 48
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)