Query 007763
Match_columns 590
No_of_seqs 450 out of 1645
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 1.6E-21 5.6E-26 151.5 0.6 57 289-349 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.4 1.9E-13 6.4E-18 116.4 5.9 83 139-222 3-93 (94)
3 2ct7_A Ring finger protein 31; 99.3 7E-14 2.4E-18 117.1 -3.1 78 204-285 4-85 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.1 1.4E-12 4.7E-17 107.6 -5.6 68 201-272 2-75 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.1 6.1E-11 2.1E-15 106.4 3.6 117 139-307 5-126 (133)
6 3hcs_A TNF receptor-associated 98.5 1.5E-08 5E-13 95.4 1.1 83 138-240 15-97 (170)
7 2ecy_A TNF receptor-associated 98.4 3.3E-07 1.1E-11 72.0 5.0 52 138-196 12-63 (66)
8 1e4u_A Transcriptional repress 98.4 3.1E-07 1E-11 75.1 4.7 54 139-197 9-64 (78)
9 1rmd_A RAG1; V(D)J recombinati 98.4 3.3E-07 1.1E-11 80.5 5.3 80 141-239 23-102 (116)
10 2ysl_A Tripartite motif-contai 98.3 3.2E-07 1.1E-11 73.4 4.4 54 138-196 17-70 (73)
11 3ztg_A E3 ubiquitin-protein li 98.3 1.7E-07 5.8E-12 78.7 2.9 49 139-193 11-60 (92)
12 1t1h_A Gspef-atpub14, armadill 98.3 4.1E-07 1.4E-11 73.9 4.8 65 139-210 6-71 (78)
13 2d8t_A Dactylidin, ring finger 98.3 6E-07 2E-11 71.6 5.5 55 138-200 12-66 (71)
14 1jm7_A BRCA1, breast cancer ty 98.3 7.7E-07 2.6E-11 77.3 6.0 70 141-215 21-91 (112)
15 2ct2_A Tripartite motif protei 98.3 7E-07 2.4E-11 74.0 5.3 60 139-201 13-74 (88)
16 3hct_A TNF receptor-associated 98.3 6E-07 2.1E-11 79.1 5.1 83 138-240 15-97 (118)
17 3l11_A E3 ubiquitin-protein li 98.3 4.2E-07 1.4E-11 79.7 3.6 50 139-195 13-62 (115)
18 3knv_A TNF receptor-associated 98.2 1.9E-07 6.5E-12 85.2 0.7 84 139-239 29-118 (141)
19 2egp_A Tripartite motif-contai 98.2 7.1E-07 2.4E-11 72.5 3.8 55 139-197 10-67 (79)
20 3lrq_A E3 ubiquitin-protein li 98.2 6.6E-07 2.2E-11 76.6 3.7 65 141-212 22-88 (100)
21 2ecj_A Tripartite motif-contai 98.2 1.9E-06 6.5E-11 65.5 5.7 44 139-185 13-56 (58)
22 2yur_A Retinoblastoma-binding 98.2 1.2E-06 4E-11 70.6 4.3 49 139-193 13-62 (74)
23 3fl2_A E3 ubiquitin-protein li 98.2 5.7E-07 1.9E-11 79.9 2.7 48 141-195 52-99 (124)
24 2y43_A E3 ubiquitin-protein li 98.2 9E-07 3.1E-11 75.4 3.8 64 141-212 22-87 (99)
25 2yu4_A E3 SUMO-protein ligase 98.2 8.3E-07 2.8E-11 75.1 3.3 55 139-195 5-63 (94)
26 2csy_A Zinc finger protein 183 98.1 1.7E-06 5.9E-11 70.7 4.9 49 138-194 12-60 (81)
27 2ysj_A Tripartite motif-contai 98.1 1.9E-06 6.4E-11 66.9 4.8 45 138-185 17-61 (63)
28 2djb_A Polycomb group ring fin 98.1 1.3E-06 4.4E-11 69.9 3.8 52 139-198 13-65 (72)
29 2ecw_A Tripartite motif-contai 98.1 1.9E-06 6.4E-11 70.7 4.7 54 139-196 17-72 (85)
30 4ayc_A E3 ubiquitin-protein li 98.1 1.3E-06 4.4E-11 79.2 3.8 46 141-194 53-98 (138)
31 1g25_A CDK-activating kinase a 98.1 6.6E-07 2.2E-11 70.1 1.6 55 141-200 3-60 (65)
32 3ng2_A RNF4, snurf, ring finge 98.1 6.7E-07 2.3E-11 71.0 1.0 55 139-199 8-67 (71)
33 2ecv_A Tripartite motif-contai 98.1 1.9E-06 6.5E-11 70.7 3.7 52 139-196 17-72 (85)
34 2c2l_A CHIP, carboxy terminus 98.1 2.8E-06 9.5E-11 85.5 5.7 51 138-196 205-256 (281)
35 2kr4_A Ubiquitin conjugation f 98.0 1.8E-06 6.3E-11 71.6 3.0 50 139-196 12-61 (85)
36 2xeu_A Ring finger protein 4; 98.0 8.2E-07 2.8E-11 68.9 0.7 55 140-200 2-61 (64)
37 2kre_A Ubiquitin conjugation f 98.0 2.2E-06 7.6E-11 73.4 3.1 50 139-196 27-76 (100)
38 2ea6_A Ring finger protein 4; 98.0 2.1E-06 7.3E-11 67.5 2.7 51 138-194 12-67 (69)
39 1z6u_A NP95-like ring finger p 98.0 2.3E-06 7.8E-11 78.8 3.1 49 141-196 78-126 (150)
40 2ecm_A Ring finger and CHY zin 98.0 3.2E-06 1.1E-10 63.5 3.3 49 140-194 4-54 (55)
41 2ckl_A Polycomb group ring fin 98.0 2.6E-06 9E-11 73.7 2.8 48 140-195 14-62 (108)
42 1bor_A Transcription factor PM 98.0 2.2E-06 7.6E-11 65.1 2.0 44 140-194 5-48 (56)
43 1jm7_B BARD1, BRCA1-associated 97.9 3.5E-06 1.2E-10 74.1 3.1 45 141-195 22-67 (117)
44 2kiz_A E3 ubiquitin-protein li 97.9 8.5E-06 2.9E-10 64.3 4.8 51 139-195 12-63 (69)
45 1wgm_A Ubiquitin conjugation f 97.9 8.4E-06 2.9E-10 69.5 4.9 50 139-196 20-70 (98)
46 2ect_A Ring finger protein 126 97.9 6.5E-06 2.2E-10 66.6 4.0 53 139-197 13-66 (78)
47 3htk_C E3 SUMO-protein ligase 97.9 5.3E-06 1.8E-10 82.3 3.6 53 140-196 180-233 (267)
48 2l0b_A E3 ubiquitin-protein li 97.8 8.9E-06 3E-10 68.2 3.9 51 139-195 38-89 (91)
49 1iym_A EL5; ring-H2 finger, ub 97.8 1.3E-05 4.6E-10 60.1 4.0 49 140-194 4-54 (55)
50 1nj3_A NPL4; NZF domain, rubre 97.8 9.1E-06 3.1E-10 54.1 2.4 28 563-590 3-30 (31)
51 2ecn_A Ring finger protein 141 97.8 4.9E-06 1.7E-10 65.9 1.3 48 139-195 13-60 (70)
52 1chc_A Equine herpes virus-1 r 97.7 1.6E-05 5.3E-10 62.5 2.8 47 141-194 5-51 (68)
53 2ep4_A Ring finger protein 24; 97.7 2.6E-05 8.8E-10 62.4 4.0 50 139-194 13-63 (74)
54 2d9g_A YY1-associated factor 2 97.7 2.1E-05 7.2E-10 58.9 3.1 30 561-590 6-35 (53)
55 2crc_A Ubiquitin conjugating e 97.7 2.9E-05 1E-09 57.7 3.5 27 564-590 8-34 (52)
56 1x4j_A Ring finger protein 38; 97.6 1.8E-05 6.2E-10 63.6 2.3 50 140-195 22-72 (75)
57 2f42_A STIP1 homology and U-bo 97.6 1.7E-05 5.9E-10 74.8 2.4 50 139-196 104-154 (179)
58 4ic3_A E3 ubiquitin-protein li 97.6 2.4E-05 8.3E-10 62.9 3.0 43 141-195 24-67 (74)
59 2ckl_B Ubiquitin ligase protei 97.6 2.6E-05 8.9E-10 72.6 3.6 48 140-194 53-101 (165)
60 2ecg_A Baculoviral IAP repeat- 97.6 4.1E-05 1.4E-09 61.6 3.4 43 141-195 25-68 (75)
61 1v87_A Deltex protein 2; ring- 97.5 4.9E-05 1.7E-09 66.1 3.9 52 141-194 25-93 (114)
62 3a9j_C Mitogen-activated prote 97.5 2.9E-05 9.8E-10 52.8 1.8 27 564-590 6-32 (34)
63 2vje_A E3 ubiquitin-protein li 97.3 7.4E-05 2.5E-09 58.3 2.1 48 139-194 6-56 (64)
64 2yho_A E3 ubiquitin-protein li 97.3 0.0001 3.5E-09 60.0 2.9 43 141-195 18-61 (79)
65 2ea5_A Cell growth regulator w 97.3 0.00027 9.3E-09 55.8 5.2 45 139-195 13-58 (68)
66 2ct7_A Ring finger protein 31; 97.3 0.00011 3.8E-09 60.9 2.8 48 295-348 26-74 (86)
67 2ecl_A Ring-box protein 2; RNF 97.3 0.00021 7.1E-09 58.4 4.4 51 140-196 14-77 (81)
68 2vje_B MDM4 protein; proto-onc 97.2 0.00011 3.8E-09 57.1 2.1 47 140-194 6-55 (63)
69 4ap4_A E3 ubiquitin ligase RNF 97.1 0.0001 3.5E-09 65.4 1.1 56 138-199 69-129 (133)
70 2y1n_A E3 ubiquitin-protein li 97.1 0.00028 9.6E-09 74.1 3.9 49 141-196 332-380 (389)
71 3dpl_R Ring-box protein 1; ubi 96.8 0.001 3.5E-08 57.3 4.4 49 140-194 36-100 (106)
72 2jmo_A Parkin; IBR, E3 ligase, 96.7 0.00064 2.2E-08 55.5 2.6 40 294-333 25-70 (80)
73 3t6p_A Baculoviral IAP repeat- 96.6 0.00065 2.2E-08 70.7 2.4 43 141-195 295-338 (345)
74 2d8s_A Cellular modulator of i 96.6 0.0016 5.5E-08 53.1 4.2 53 139-195 13-70 (80)
75 3gj3_B Nuclear pore complex pr 96.4 0.0011 3.9E-08 44.3 1.5 28 563-590 4-31 (33)
76 3b08_B Ranbp-type and C3HC4-ty 96.2 0.0016 5.4E-08 50.4 1.8 27 564-590 6-32 (64)
77 4a0k_B E3 ubiquitin-protein li 95.5 0.0028 9.6E-08 55.5 0.5 49 140-194 47-111 (117)
78 2bay_A PRE-mRNA splicing facto 94.8 0.013 4.4E-07 45.0 2.3 49 141-197 3-52 (61)
79 2ebq_A Nuclear pore complex pr 94.4 0.026 8.9E-07 40.8 2.9 27 563-589 8-34 (47)
80 3gj5_B Nuclear pore complex pr 94.2 0.017 5.9E-07 38.8 1.6 27 563-589 4-30 (34)
81 1v92_A NSFL1 cofactor P47; 3-h 94.1 0.079 2.7E-06 37.9 5.1 41 79-119 5-45 (46)
82 1wd2_A Ariadne-1 protein homol 92.8 0.041 1.4E-06 42.1 1.8 37 224-264 5-44 (60)
83 2ct0_A Non-SMC element 1 homol 92.8 0.16 5.3E-06 40.6 5.3 50 140-194 14-63 (74)
84 2dal_A Protein KIAA0794; FAS a 92.7 0.2 6.8E-06 38.5 5.6 42 78-119 14-55 (62)
85 2ebr_A Nuclear pore complex pr 92.7 0.1 3.4E-06 37.8 3.6 26 564-589 9-34 (47)
86 3k1l_B Fancl; UBC, ring, RWD, 91.5 0.22 7.6E-06 51.1 5.9 108 66-197 247-375 (381)
87 2jun_A Midline-1; B-BOX, TRIM, 90.2 0.12 4.2E-06 43.3 2.3 32 141-173 3-36 (101)
88 3vk6_A E3 ubiquitin-protein li 90.0 0.16 5.6E-06 42.6 2.8 46 143-194 3-48 (101)
89 2jun_A Midline-1; B-BOX, TRIM, 89.0 0.03 1E-06 47.2 -2.6 69 246-329 17-87 (101)
90 2dam_A ETEA protein; KIAA0887, 88.6 0.82 2.8E-05 35.6 5.7 41 79-119 18-59 (67)
91 2dzl_A Protein FAM100B; UBA-li 88.1 0.76 2.6E-05 35.7 5.2 39 81-119 19-57 (66)
92 3e21_A HFAF1, FAS-associated f 87.2 0.69 2.4E-05 33.1 4.1 39 79-117 5-44 (45)
93 3gj7_B Nuclear pore complex pr 87.2 0.12 4E-06 43.6 0.0 27 564-590 7-33 (98)
94 3gj7_B Nuclear pore complex pr 85.4 0.29 9.9E-06 41.2 1.5 27 564-590 70-96 (98)
95 1wj7_A Hypothetical protein (R 85.3 1.3 4.5E-05 37.4 5.5 40 79-118 39-78 (104)
96 1g25_A CDK-activating kinase a 85.2 0.31 1E-05 37.1 1.5 33 250-307 24-56 (65)
97 3lrq_A E3 ubiquitin-protein li 84.9 0.24 8.1E-06 41.5 0.8 35 295-335 23-57 (100)
98 2ebv_A Nuclear pore complex pr 84.6 2.1 7.1E-05 32.2 5.7 26 564-589 29-54 (57)
99 1x4j_A Ring finger protein 38; 83.5 0.57 1.9E-05 36.7 2.4 37 247-309 38-75 (75)
100 2jrp_A Putative cytoplasmic pr 83.4 0.51 1.7E-05 38.1 2.1 50 295-347 3-57 (81)
101 1vyx_A ORF K3, K3RING; zinc-bi 82.9 0.71 2.4E-05 35.0 2.6 49 140-194 5-58 (60)
102 2cs3_A Protein C14ORF4, MY039 82.7 1.2 4.2E-05 35.5 3.9 55 136-190 10-68 (93)
103 2k1p_A Zinc finger RAN-binding 82.5 0.76 2.6E-05 30.5 2.3 25 566-590 6-30 (33)
104 2di0_A Activating signal coint 81.7 3.2 0.00011 32.5 6.0 41 78-118 12-53 (71)
105 2jne_A Hypothetical protein YF 80.9 0.5 1.7E-05 39.2 1.2 50 295-347 33-87 (101)
106 1bor_A Transcription factor PM 80.5 1 3.5E-05 33.3 2.7 27 251-306 23-49 (56)
107 2lk0_A RNA-binding protein 5; 79.4 0.68 2.3E-05 30.5 1.3 26 565-590 4-29 (32)
108 2ckl_B Ubiquitin ligase protei 78.4 0.6 2E-05 42.7 1.0 34 295-334 55-88 (165)
109 1z96_A DNA-damage, UBA-domain 77.4 4.3 0.00015 27.5 5.0 35 80-115 5-39 (40)
110 2ysl_A Tripartite motif-contai 77.3 0.98 3.3E-05 34.9 1.9 32 295-333 21-52 (73)
111 3bvo_A CO-chaperone protein HS 76.5 28 0.00096 32.9 12.3 15 505-519 191-205 (207)
112 2djb_A Polycomb group ring fin 76.3 0.67 2.3E-05 36.0 0.6 34 295-334 16-49 (72)
113 2ckl_A Polycomb group ring fin 76.0 0.92 3.2E-05 38.2 1.5 35 295-335 16-50 (108)
114 2ysj_A Tripartite motif-contai 76.0 0.71 2.4E-05 34.7 0.7 33 295-334 21-53 (63)
115 4ayc_A E3 ubiquitin-protein li 75.8 0.98 3.4E-05 40.0 1.7 34 295-335 54-87 (138)
116 2ecy_A TNF receptor-associated 74.9 0.8 2.7E-05 34.8 0.7 32 295-333 16-47 (66)
117 2y43_A E3 ubiquitin-protein li 73.8 1.1 3.8E-05 37.0 1.4 34 295-334 23-56 (99)
118 3gj8_B Nuclear pore complex pr 73.0 1.3 4.4E-05 36.7 1.6 27 564-590 63-89 (92)
119 3gj8_B Nuclear pore complex pr 72.9 0.72 2.5E-05 38.2 0.0 26 565-590 7-32 (92)
120 1pft_A TFIIB, PFTFIIBN; N-term 72.6 2.5 8.6E-05 30.5 2.9 29 294-323 5-34 (50)
121 1vq8_Z 50S ribosomal protein L 72.5 1.5 5.1E-05 35.6 1.8 36 294-333 27-62 (83)
122 1t1h_A Gspef-atpub14, armadill 72.3 1.3 4.4E-05 34.8 1.4 33 295-334 9-41 (78)
123 2ecw_A Tripartite motif-contai 72.2 0.98 3.3E-05 35.8 0.6 45 295-346 20-64 (85)
124 2jr6_A UPF0434 protein NMA0874 71.6 2.3 8E-05 33.1 2.6 28 295-323 9-36 (68)
125 2ct2_A Tripartite motif protei 71.5 0.93 3.2E-05 36.4 0.3 38 295-335 16-53 (88)
126 3fl2_A E3 ubiquitin-protein li 71.3 1.1 3.7E-05 38.8 0.8 32 295-333 53-84 (124)
127 3l11_A E3 ubiquitin-protein li 71.2 2.1 7E-05 36.4 2.5 34 295-335 16-49 (115)
128 2yur_A Retinoblastoma-binding 71.1 1.2 4.1E-05 34.8 0.9 34 295-334 16-49 (74)
129 2ecm_A Ring finger and CHY zin 70.9 1.5 5.3E-05 31.6 1.4 37 295-334 6-42 (55)
130 2kiz_A E3 ubiquitin-protein li 70.8 1.2 4.2E-05 34.0 0.9 36 295-334 15-50 (69)
131 1e4u_A Transcriptional repress 70.4 1.1 3.7E-05 35.8 0.5 35 295-332 12-46 (78)
132 1iym_A EL5; ring-H2 finger, ub 69.2 2.6 8.8E-05 30.4 2.4 37 295-334 6-42 (55)
133 1jm7_A BRCA1, breast cancer ty 69.1 1.3 4.4E-05 37.3 0.7 34 295-335 22-55 (112)
134 1chc_A Equine herpes virus-1 r 68.7 1.6 5.6E-05 33.1 1.2 33 295-333 6-38 (68)
135 2egp_A Tripartite motif-contai 68.4 1.9 6.4E-05 33.8 1.5 33 295-334 13-45 (79)
136 2d8t_A Dactylidin, ring finger 66.4 1.7 5.8E-05 33.5 0.9 34 295-335 16-49 (71)
137 1w7p_D VPS36P, YLR417W; ESCRT- 66.1 1.2 4.2E-05 48.7 0.0 22 567-588 181-202 (566)
138 1jm7_B BARD1, BRCA1-associated 65.8 2.5 8.7E-05 36.1 2.0 33 295-333 23-55 (117)
139 2k4x_A 30S ribosomal protein S 65.6 1.9 6.6E-05 32.1 1.0 29 294-323 18-46 (55)
140 3ng2_A RNF4, snurf, ring finge 65.4 1.4 4.6E-05 33.8 0.1 39 295-334 11-50 (71)
141 3nw0_A Non-structural maintena 65.0 4 0.00014 39.8 3.5 50 141-196 180-230 (238)
142 2cr8_A MDM4 protein; ZF-ranbp 64.5 5 0.00017 29.1 2.9 28 563-590 8-35 (53)
143 4ic3_A E3 ubiquitin-protein li 63.9 2.1 7.1E-05 33.5 1.0 26 251-306 41-67 (74)
144 2ecj_A Tripartite motif-contai 63.9 1.5 5E-05 32.1 0.0 32 295-333 16-47 (58)
145 3vk6_A E3 ubiquitin-protein li 63.7 1.9 6.5E-05 36.1 0.7 24 296-320 3-29 (101)
146 2ea6_A Ring finger protein 4; 63.6 1.8 6.2E-05 32.8 0.5 38 295-333 16-54 (69)
147 3ddt_A E3 ubiquitin-protein li 63.4 3.2 0.00011 29.5 1.8 26 295-328 7-33 (48)
148 3j20_Y 30S ribosomal protein S 63.3 3.5 0.00012 30.0 2.0 29 294-323 19-47 (50)
149 2csy_A Zinc finger protein 183 63.1 2 6.7E-05 34.0 0.7 33 295-334 16-48 (81)
150 2did_A Tripartite motif protei 63.1 3.8 0.00013 29.8 2.2 27 295-329 9-35 (53)
151 2y1n_A E3 ubiquitin-protein li 61.9 6.7 0.00023 41.0 4.6 32 250-306 348-379 (389)
152 3bq3_A Defective in cullin ned 61.6 7.7 0.00026 38.5 4.8 43 78-120 14-56 (270)
153 2ecn_A Ring finger protein 141 61.5 2.3 7.9E-05 32.5 0.8 31 295-333 16-46 (70)
154 2csv_A Tripartite motif protei 61.4 3.5 0.00012 32.0 1.9 31 295-335 19-49 (72)
155 2ect_A Ring finger protein 126 61.2 3.3 0.00011 32.3 1.7 36 295-334 16-51 (78)
156 1z6u_A NP95-like ring finger p 60.9 2.3 7.8E-05 38.4 0.8 34 295-335 79-112 (150)
157 3knv_A TNF receptor-associated 60.9 2.2 7.6E-05 38.0 0.7 32 295-333 32-63 (141)
158 2xeu_A Ring finger protein 4; 60.7 1.9 6.6E-05 32.0 0.2 39 295-334 4-43 (64)
159 1n0z_A ZNF265; zinc finger, RN 60.5 9.4 0.00032 27.1 3.8 26 565-590 13-40 (45)
160 2ecv_A Tripartite motif-contai 60.3 2.3 8E-05 33.5 0.7 32 295-333 20-51 (85)
161 3ghg_A Fibrinogen alpha chain; 59.6 47 0.0016 35.6 10.5 12 505-516 176-187 (562)
162 3ztg_A E3 ubiquitin-protein li 59.4 1.8 6.1E-05 35.1 -0.2 33 295-333 14-46 (92)
163 1fre_A Nuclear factor XNF7; zi 59.0 5.4 0.00018 27.3 2.3 27 295-329 4-30 (42)
164 1weo_A Cellulose synthase, cat 58.6 17 0.00057 29.7 5.3 48 140-193 15-68 (93)
165 1deq_A Fibrinogen (alpha chain 58.3 1.5E+02 0.005 30.6 13.5 15 427-441 158-172 (390)
166 1v87_A Deltex protein 2; ring- 57.4 3.6 0.00012 34.7 1.4 36 251-307 60-95 (114)
167 2ep4_A Ring finger protein 24; 57.0 3.3 0.00011 32.0 1.0 36 295-334 16-51 (74)
168 2yvr_A Transcription intermedi 56.9 5 0.00017 28.7 1.9 31 295-335 7-38 (50)
169 2yrg_A Tripartite motif-contai 56.4 5.6 0.00019 29.7 2.2 27 295-329 15-41 (59)
170 2g3q_A Protein YBL047C; endocy 56.4 20 0.00067 24.8 4.9 36 81-117 6-41 (43)
171 1deq_A Fibrinogen (alpha chain 56.3 77 0.0026 32.6 11.1 12 460-471 117-128 (390)
172 2l0b_A E3 ubiquitin-protein li 55.9 2.2 7.4E-05 34.8 -0.3 36 295-334 41-76 (91)
173 2d8u_A Ubiquitin ligase TRIM63 55.8 4.9 0.00017 30.2 1.8 27 295-329 9-36 (64)
174 2yho_A E3 ubiquitin-protein li 55.4 3.6 0.00012 32.7 1.0 26 251-306 35-61 (79)
175 3hct_A TNF receptor-associated 55.3 3.2 0.00011 35.5 0.7 33 295-334 19-51 (118)
176 1ify_A HHR23A, UV excision rep 55.0 24 0.00081 25.3 5.3 37 80-117 9-45 (49)
177 2c2l_A CHIP, carboxy terminus 54.5 7.6 0.00026 37.8 3.4 30 224-262 207-236 (281)
178 1rmd_A RAG1; V(D)J recombinati 53.7 3.5 0.00012 35.0 0.7 33 295-334 24-56 (116)
179 2hf1_A Tetraacyldisaccharide-1 52.5 8.8 0.0003 29.8 2.7 28 295-323 9-36 (68)
180 2js4_A UPF0434 protein BB2007; 52.1 9.4 0.00032 29.8 2.9 28 295-323 9-36 (70)
181 3lqh_A Histone-lysine N-methyl 51.8 7.3 0.00025 36.4 2.6 69 142-213 3-83 (183)
182 1vg5_A RSGI RUH-014, rhomboid 51.3 22 0.00077 27.9 4.9 36 81-117 31-66 (73)
183 2jp7_A MRNA export factor MEX6 50.6 34 0.0012 25.5 5.6 41 77-117 4-44 (57)
184 1wfh_A Zinc finger (AN1-like) 50.5 8.1 0.00028 29.6 2.2 28 294-327 15-42 (64)
185 2pk7_A Uncharacterized protein 50.1 11 0.00036 29.4 2.8 28 295-323 9-36 (69)
186 1oai_A Nuclear RNA export fact 49.6 41 0.0014 25.2 6.0 39 78-116 6-44 (59)
187 2c6a_A Ubiquitin-protein ligas 49.6 7.3 0.00025 27.7 1.6 31 560-590 7-37 (46)
188 2egm_A Tripartite motif-contai 48.5 7.2 0.00025 28.9 1.6 27 295-329 19-45 (57)
189 1wfl_A Zinc finger protein 216 48.1 8.4 0.00029 30.4 2.0 27 295-327 26-52 (74)
190 1odh_A MGCM1; transcription fa 47.9 14 0.00049 33.3 3.7 35 265-320 96-130 (174)
191 2ecl_A Ring-box protein 2; RNF 46.5 7.3 0.00025 30.8 1.5 18 318-335 47-64 (81)
192 3h0g_I DNA-directed RNA polyme 46.4 13 0.00045 31.7 3.2 29 294-323 4-36 (113)
193 3ghg_A Fibrinogen alpha chain; 45.8 97 0.0033 33.3 10.2 30 451-481 130-159 (562)
194 2dak_A Ubiquitin carboxyl-term 45.6 32 0.0011 25.9 4.9 37 82-119 12-48 (63)
195 1veg_A NEDD8 ultimate buster-1 44.8 30 0.001 27.9 4.8 36 83-119 33-68 (83)
196 2jny_A Uncharacterized BCR; st 44.8 14 0.00047 28.6 2.7 28 295-323 11-38 (67)
197 3hcs_A TNF receptor-associated 44.8 5.8 0.0002 36.1 0.7 32 295-333 19-50 (170)
198 1z60_A TFIIH basal transcripti 44.7 15 0.0005 27.7 2.8 41 143-189 17-58 (59)
199 1wg2_A Zinc finger (AN1-like) 42.9 12 0.0004 28.8 2.0 28 294-327 15-42 (64)
200 3qt1_I DNA-directed RNA polyme 41.0 13 0.00043 32.9 2.2 30 293-323 23-56 (133)
201 2jy5_A Ubiquilin-1; UBA, alter 40.3 40 0.0014 24.4 4.5 37 81-118 14-51 (52)
202 1x4v_A Hypothetical protein LO 40.2 11 0.00038 28.8 1.5 31 225-262 12-43 (63)
203 2dja_A Midline-2; tripartite m 40.1 13 0.00044 29.5 2.0 27 295-329 19-46 (84)
204 1wff_A Riken cDNA 2810002D23 p 40.0 14 0.00049 29.9 2.2 28 294-326 25-52 (85)
205 2knz_A Ubiquilin-4; cytoplasm, 40.0 55 0.0019 23.7 5.3 40 78-118 10-50 (53)
206 1wfp_A Zinc finger (AN1-like) 39.9 11 0.00036 29.8 1.4 27 294-326 25-51 (74)
207 2jrp_A Putative cytoplasmic pr 38.8 12 0.0004 30.2 1.5 29 296-333 33-63 (81)
208 2d8v_A Zinc finger FYVE domain 38.4 15 0.0005 28.3 1.9 29 140-171 7-36 (67)
209 1wji_A Tudor domain containing 37.3 48 0.0017 25.1 4.7 36 81-117 11-46 (63)
210 1twf_I B12.6, DNA-directed RNA 37.2 12 0.00042 32.3 1.6 29 294-323 4-36 (122)
211 3t6p_A Baculoviral IAP repeat- 36.4 13 0.00046 38.1 1.9 26 251-306 312-338 (345)
212 4a0k_B E3 ubiquitin-protein li 35.5 7.8 0.00027 33.4 0.0 37 296-334 61-99 (117)
213 2yw8_A RUN and FYVE domain-con 34.9 14 0.00047 29.6 1.4 41 287-330 11-52 (82)
214 1weo_A Cellulose synthase, cat 34.1 21 0.00071 29.1 2.3 53 233-311 22-75 (93)
215 1dl6_A Transcription factor II 32.8 29 0.00099 25.8 2.8 26 295-321 12-38 (58)
216 1x4w_A Hypothetical protein FL 31.4 10 0.00035 29.3 0.1 28 294-326 15-44 (67)
217 3pwf_A Rubrerythrin; non heme 31.4 2.9E+02 0.01 24.9 14.6 24 566-589 138-162 (170)
218 1wfe_A Riken cDNA 2310008M20 p 30.8 23 0.00077 28.8 2.0 32 224-262 24-56 (86)
219 2f42_A STIP1 homology and U-bo 30.7 42 0.0014 31.0 4.1 30 223-261 104-133 (179)
220 3m7n_A Putative uncharacterize 30.2 24 0.00082 32.5 2.4 24 295-321 141-164 (179)
221 1twf_L ABC10-alpha, DNA-direct 30.1 19 0.00064 28.1 1.4 26 295-322 29-54 (70)
222 2yu4_A E3 SUMO-protein ligase 30.1 15 0.00051 29.9 0.9 33 295-333 8-40 (94)
223 1wiv_A UBP14, ubiquitin-specif 30.1 83 0.0028 24.4 5.2 35 83-118 33-67 (73)
224 1joc_A EEA1, early endosomal a 29.7 26 0.00088 30.4 2.3 40 288-330 62-102 (125)
225 3t7l_A Zinc finger FYVE domain 29.6 38 0.0013 27.5 3.2 34 137-170 16-51 (90)
226 3dpl_R Ring-box protein 1; ubi 29.5 15 0.00051 30.9 0.7 25 308-334 64-88 (106)
227 1wii_A Hypothetical UPF0222 pr 29.4 25 0.00084 28.5 2.0 28 295-323 24-57 (85)
228 1wr1_B Ubiquitin-like protein 29.1 1E+02 0.0034 22.9 5.2 41 77-118 15-56 (58)
229 2dah_A Ubiquilin-3; UBA domain 28.4 43 0.0015 24.5 3.0 37 81-118 11-48 (54)
230 2akl_A PHNA-like protein PA012 27.3 36 0.0012 29.7 2.8 30 292-323 25-54 (138)
231 2xzf_A Formamidopyrimidine-DNA 26.8 23 0.00078 35.0 1.7 25 295-320 243-269 (271)
232 1ee8_A MUTM (FPG) protein; bet 26.5 27 0.00091 34.4 2.1 25 295-320 236-262 (266)
233 2dkl_A Trinucleotide repeat co 26.4 1.1E+02 0.0039 24.5 5.5 38 80-118 22-59 (85)
234 2l2d_A OTU domain-containing p 26.0 1.5E+02 0.0053 22.4 5.6 37 79-115 17-53 (73)
235 1y02_A CARP2, FYVE-ring finger 26.0 28 0.00095 30.1 1.8 33 295-330 20-52 (120)
236 2dai_A Ubadc1, ubiquitin assoc 26.0 98 0.0034 24.7 5.0 36 82-118 32-67 (83)
237 3u6p_A Formamidopyrimidine-DNA 25.8 24 0.00083 34.9 1.7 25 295-320 246-272 (273)
238 3u5c_f 40S ribosomal protein S 25.5 36 0.0012 30.6 2.6 33 225-259 118-151 (152)
239 1k82_A Formamidopyrimidine-DNA 25.3 26 0.00087 34.6 1.7 25 295-320 241-267 (268)
240 1wfk_A Zinc finger, FYVE domai 25.1 33 0.0011 27.8 2.1 33 295-330 10-42 (88)
241 1k3x_A Endonuclease VIII; hydr 25.0 26 0.00088 34.4 1.7 25 295-320 235-261 (262)
242 2bwb_A Ubiquitin-like protein 24.6 1.6E+02 0.0054 20.6 5.3 40 77-117 5-45 (46)
243 3h0g_I DNA-directed RNA polyme 24.3 42 0.0014 28.5 2.7 30 225-256 4-36 (113)
244 2kpi_A Uncharacterized protein 24.0 50 0.0017 24.4 2.7 27 295-323 11-38 (56)
245 1dvp_A HRS, hepatocyte growth 23.8 42 0.0014 31.8 2.8 33 295-330 162-194 (220)
246 2cpw_A CBL-interacting protein 23.6 91 0.0031 23.5 4.2 35 82-117 22-57 (64)
247 3htk_C E3 SUMO-protein ligase 23.5 29 0.00099 34.2 1.7 33 295-333 182-214 (267)
248 1wys_A Riken cDNA 2310008M20 p 23.1 58 0.002 25.6 3.1 33 226-265 15-49 (75)
249 3u5c_f 40S ribosomal protein S 22.8 44 0.0015 30.0 2.6 30 295-325 119-150 (152)
250 3h0g_L DNA-directed RNA polyme 22.6 39 0.0013 25.7 1.9 27 295-323 22-48 (63)
251 1twf_I B12.6, DNA-directed RNA 22.5 41 0.0014 29.0 2.3 31 224-256 3-36 (122)
252 1z2q_A LM5-1; membrane protein 22.4 80 0.0027 25.1 3.9 34 137-170 17-52 (84)
253 3s84_A Apolipoprotein A-IV; fo 21.7 5.6E+02 0.019 24.9 17.7 27 453-479 155-181 (273)
254 2xzm_9 RPS31E; ribosome, trans 21.7 40 0.0014 31.4 2.2 27 295-323 114-141 (189)
255 1joc_A EEA1, early endosomal a 21.5 40 0.0014 29.2 2.0 32 139-170 67-100 (125)
256 2ko5_A Ring finger protein Z; 21.5 59 0.002 26.8 2.8 48 140-197 27-75 (99)
257 3v2d_5 50S ribosomal protein L 21.3 39 0.0013 25.4 1.6 21 294-320 30-50 (60)
258 2a20_A Regulating synaptic mem 20.9 44 0.0015 25.1 1.8 36 295-333 10-45 (62)
259 1f5n_A Interferon-induced guan 20.9 4.8E+02 0.016 28.5 11.0 68 450-522 513-580 (592)
260 4esj_A Type-2 restriction enzy 20.8 69 0.0023 30.9 3.6 36 286-323 27-66 (257)
261 3k9o_A Ubiquitin-conjugating e 20.7 1.1E+02 0.0036 28.6 5.0 37 80-117 164-200 (201)
262 1y02_A CARP2, FYVE-ring finger 20.6 43 0.0015 28.9 2.0 34 137-170 15-50 (120)
263 2ysm_A Myeloid/lymphoid or mix 20.3 2.2E+02 0.0074 23.5 6.4 31 140-170 6-37 (111)
264 2yw8_A RUN and FYVE domain-con 20.2 56 0.0019 25.9 2.5 33 138-170 16-50 (82)
265 3e46_A Ubiquitin-conjugating e 20.0 1.3E+02 0.0044 29.3 5.5 36 81-117 217-252 (253)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.81 E-value=1.6e-21 Score=151.51 Aligned_cols=57 Identities=58% Similarity=1.443 Sum_probs=53.3
Q ss_pred HHHhcCcCCCCCCcceeeccCCCceeecCC--CcceeeecccccccCCCCCCCCcccCCchhh
Q 007763 289 WILANSKPCPRCKRPIEKNQGCMHMTCTPP--CKFEFCWLCLGQWSDHGERTGGFYACNRYET 349 (590)
Q Consensus 289 wi~~ntK~CP~C~~~IEK~~GCnhMtC~~~--C~~~FCw~C~~~w~~H~~~~g~~y~C~~~~~ 349 (590)
||.+++|+||+|+.+|||++|||||+|+ . |+++|||+|+++|..|+. .+|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~-~~~C~~~FCw~C~~~~~~~~~---~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCR-NQNCKAEFCWVCLGPWEPHGS---AWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCC-SSGGGSCCSSSSCSCSGGGGT---SSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEEC-CCCcCCEEeeCcCCCcccCCC---ccccCCCccc
Confidence 7888999999999999999999999998 7 999999999999999985 6899999963
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=1.9e-13 Score=116.39 Aligned_cols=83 Identities=20% Similarity=0.526 Sum_probs=69.1
Q ss_pred CCcccccccccccCCCCceec-CCCCccchhhH-----HHhhcCCCceecccCCCCCCCc--cchhHHhhcCChHHHHHH
Q 007763 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCW-----TAINDGPGCLMLRCPDPSCGAA--VGQDMIYLLSSDEDKVKY 210 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~-----~~i~~g~~~~~i~CP~~~C~~~--i~~~~i~~ll~~e~~eky 210 (590)
...++|+||++.++...++.+ +|||.||.+|| ..|.+|. ...++||.++|+.. +++..++++++++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 457899999999866566665 69999999999 3445553 24799998889999 999999999999999999
Q ss_pred HHHHHHHHhhcC
Q 007763 211 NRYFIRSYVEDN 222 (590)
Q Consensus 211 ~~~l~~~~v~~~ 222 (590)
.+++++.|++++
T Consensus 82 ~~~~~~~~v~~~ 93 (94)
T 1wim_A 82 KKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHSSCSSC
T ss_pred HHHHHHhhhccC
Confidence 999999888653
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.30 E-value=7e-14 Score=117.07 Aligned_cols=78 Identities=22% Similarity=0.603 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcccCCCCCCCceEeeecCCCcceeEe-cCCCccccccCCCc---CCCCCchhHHHHHHh
Q 007763 204 DEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEA---HRPVDCDTVAKWVLK 279 (590)
Q Consensus 204 ~e~~eky~~~l~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~---H~p~~C~~~~~w~~k 279 (590)
++++++|.+++++.+|..+++++||| +|+.++...+ ....|+| .|++.||+.|+.+| |.|++|..+++|+.+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~--~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYER--EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCC--SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecC--CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 35567888899999999999999999 8999887653 3567999 79999999999999 999999999999998
Q ss_pred hhhhhh
Q 007763 280 NSAESE 285 (590)
Q Consensus 280 ~~~e~e 285 (590)
+..+++
T Consensus 80 n~~~~~ 85 (86)
T 2ct7_A 80 NSGPSS 85 (86)
T ss_dssp HTCSSC
T ss_pred Cccccc
Confidence 876654
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.08 E-value=1.4e-12 Score=107.59 Aligned_cols=68 Identities=28% Similarity=0.616 Sum_probs=59.4
Q ss_pred cCChHHHHHHHHHHHHHHhhcCCCcccCCCCCCCceEeeecCCCcceeEe------cCCCccccccCCCcCCCCCchh
Q 007763 201 LSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC------RCSYSFCWNCTEEAHRPVDCDT 272 (590)
Q Consensus 201 ll~~e~~eky~~~l~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C------~C~~~fC~~C~~~~H~p~~C~~ 272 (590)
+|+++++++|++++++++|..+. ++|||+|+|+++|...+ ....|.| .|++.||+.|+.+||. .+|..
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 46667889999999999998886 99999999999987653 4566899 6999999999999999 99975
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=6.1e-11 Score=106.45 Aligned_cols=117 Identities=25% Similarity=0.652 Sum_probs=78.6
Q ss_pred CCcccccccccccCC-----CCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhhcCChHHHHHHHHH
Q 007763 139 GEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRY 213 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~ll~~e~~eky~~~ 213 (590)
.+.+.|+||++.+.. ..++.++|||.||..||..+.... ..|| .|+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP--~Cr~~~~~~~l~~l~i---------- 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCP--TCRKKINHKRYHPIYI---------- 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC----SBCT--TTCCBCTTTCEEECBC----------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC----CCCC--CCCCcCcccccccccc----------
Confidence 346889999998731 123889999999999996665443 4899 8999887655543321
Q ss_pred HHHHHhhcCCCcccCCCCCCCceEeeecCCCcceeEecCCCccccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhc
Q 007763 214 FIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILAN 293 (590)
Q Consensus 214 l~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~n 293 (590)
+.....||. |...+..........+...||+.||..|... |+..
T Consensus 69 --------~~~~~~C~i--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~~-------------- 112 (133)
T 4ap4_A 69 --------GSGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLKN-------------- 112 (133)
T ss_dssp --------SSSSCBCTT--TCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHHH--------------
T ss_pred --------CCCCCCCCC--CCCccccccccCcceEeCCCCChhhHHHHHH------------HHHc--------------
Confidence 233457874 7655432211222335569999999999744 3321
Q ss_pred CcCCCCCCcceeec
Q 007763 294 SKPCPRCKRPIEKN 307 (590)
Q Consensus 294 tK~CP~C~~~IEK~ 307 (590)
.+.||.|+..|.++
T Consensus 113 ~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 113 ANTCPTCRKKINHK 126 (133)
T ss_dssp CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChh
Confidence 27999999999864
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.53 E-value=1.5e-08 Score=95.40 Aligned_cols=83 Identities=19% Similarity=0.471 Sum_probs=56.2
Q ss_pred CCCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhhcCChHHHHHHHHHHHHH
Q 007763 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRS 217 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~ll~~e~~eky~~~l~~~ 217 (590)
....+.|+||++.+ .+++.++|||.||..||..+.... ...|| .|+..+....+. ....+ +.
T Consensus 15 ~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP--~Cr~~~~~~~~~---~~~~~--------~~ 76 (170)
T 3hcs_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA---GHKCP--VDNEILLENQLF---PDNFA--------KR 76 (170)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH---CSBCT--TTCCBCCGGGCE---ECHHH--------HH
T ss_pred CCCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC---CCCCC--CCccCcchhhhh---hhHHH--------HH
Confidence 45678999999987 678889999999999995443321 24899 799888664321 11111 11
Q ss_pred HhhcCCCcccCCCCCCCceEeee
Q 007763 218 YVEDNRKTKWCPAPGCDYAVDFV 240 (590)
Q Consensus 218 ~v~~~~~~~~CP~p~C~~~i~~~ 240 (590)
.+. ...+.||+.+|+..+...
T Consensus 77 ~i~--~l~v~C~n~GC~~~~~~~ 97 (170)
T 3hcs_A 77 EIL--SLMVKCPNEGCLHKMELR 97 (170)
T ss_dssp HHH--TSEEECCSTTCCCEEEGG
T ss_pred HHh--hcccCCCCCCCCceecHh
Confidence 111 235799999999877643
No 7
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=3.3e-07 Score=72.04 Aligned_cols=52 Identities=25% Similarity=0.598 Sum_probs=40.7
Q ss_pred CCCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
....+.|+||++.+ .+++.++|||.||..|+..+... ....|| .|+..+...
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---~~~~CP--~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLSS---SSPKCT--ACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHTT---SSCCCT--TTCCCCCTT
T ss_pred CCcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHHh---CcCCCC--CCCcCCChh
Confidence 34578999999987 66777899999999999655432 246899 799887654
No 8
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.36 E-value=3.1e-07 Score=75.08 Aligned_cols=54 Identities=26% Similarity=0.640 Sum_probs=40.5
Q ss_pred CCcccccccccccCCCCceecC--CCCccchhhHHHhhcCCCceecccCCCCCCCccchhH
Q 007763 139 GEEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDM 197 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~ 197 (590)
...++|+||++.+...++..++ |||.||..||..++.. ...+|| .|+..+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP--~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD---ENGLCP--ACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS---SCSBCT--TTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc---CCCCCC--CCCCccCCCc
Confidence 4568999999987555555544 9999999999666543 247999 8999886543
No 9
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.36 E-value=3.3e-07 Score=80.45 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=54.7
Q ss_pred cccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhhcCChHHHHHHHHHHHHHHhh
Q 007763 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRSYVE 220 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~ll~~e~~eky~~~l~~~~v~ 220 (590)
.+.|+||++.+ .+++.++|||.||..|+..+.... ...|| .|+..+....+...+ ..+. ..+ .
T Consensus 23 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP--~Cr~~~~~~~~~~~~-~~l~----~~i-~---- 85 (116)
T 1rmd_A 23 SISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM---GSYCP--SCRYPCFPTDLESPV-KSFL----NIL-N---- 85 (116)
T ss_dssp HTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---CSBCT--TTCCBCCGGGCBCCC-HHHH----HHH-H----
T ss_pred CCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC---cCcCC--CCCCCCCHhhccccH-HHHH----HHH-H----
Confidence 57899999987 678889999999999994443321 25899 899998765543221 1111 111 1
Q ss_pred cCCCcccCCCCCCCceEee
Q 007763 221 DNRKTKWCPAPGCDYAVDF 239 (590)
Q Consensus 221 ~~~~~~~CP~p~C~~~i~~ 239 (590)
...++||+.||+..+..
T Consensus 86 --~l~v~C~~~gC~~~~~~ 102 (116)
T 1rmd_A 86 --SLMVKCPAQDCNEEVSL 102 (116)
T ss_dssp --HCEEECCSTTCCCEEEH
T ss_pred --HhcCCCCCCCCcchhhH
Confidence 12468999999987754
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=3.2e-07 Score=73.43 Aligned_cols=54 Identities=33% Similarity=0.863 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
....+.|+||++.+ .+++.++|||.||..|+..+.... .....|| .|+..+...
T Consensus 17 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP--~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS-CGFFKCP--LCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSS-CSCCCCS--SSCCCCCCC
T ss_pred CccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcC-CCCCCCC--CCCCcCCcc
Confidence 34578999999987 578888999999999996555421 1357999 899887654
No 11
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.34 E-value=1.7e-07 Score=78.71 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=38.6
Q ss_pred CCcccccccccccCCCCceecC-CCCccchhhHHHhhcCCCceecccCCCCCCCcc
Q 007763 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAV 193 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i 193 (590)
...+.|+||++.+ .+++.++ |||.||..|+..+.... ....|| .|+..+
T Consensus 11 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES--DEHTCP--TCHQND 60 (92)
T ss_dssp CTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHC--TTCCCT--TTCCSS
T ss_pred CcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhc--CCCcCc--CCCCcC
Confidence 4578999999988 6788999 99999999994443221 137899 799886
No 12
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.33 E-value=4.1e-07 Score=73.87 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=45.9
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhH-HhhcCChHHHHHH
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDM-IYLLSSDEDKVKY 210 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~-i~~ll~~e~~eky 210 (590)
...+.|+||++.+ .+++.++|||.||..|+..+.... ...|| .|+..+.... +.+......++.|
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP--~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDAG---HKTCP--KSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTTT---CCBCT--TTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHHC---cCCCC--CCcCCCChhhCccCHHHHHHHHHH
Confidence 3478999999987 778999999999999995444321 36899 7999886443 2333334444444
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=6e-07 Score=71.64 Aligned_cols=55 Identities=22% Similarity=0.460 Sum_probs=43.5
Q ss_pred CCCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhh
Q 007763 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 200 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~ 200 (590)
....+.|+||++.+ .+++.++|||.||..|+..+... ...|| .|+..+....+..
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~----~~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL----GKRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC----SSBCS--SSCCBCCHHHHSC
T ss_pred CCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC----CCcCc--CcCchhCHhhccC
Confidence 44568899999987 67888999999999999665433 26899 8999988766543
No 14
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.29 E-value=7.7e-07 Score=77.30 Aligned_cols=70 Identities=17% Similarity=0.372 Sum_probs=48.7
Q ss_pred cccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhh-cCChHHHHHHHHHHH
Q 007763 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYL-LSSDEDKVKYNRYFI 215 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~-ll~~e~~eky~~~l~ 215 (590)
.+.|+||++.+ .+++.++|||.||..|+..+..... ....|| .|+..+....+.. .....+.+.+.+.+.
T Consensus 21 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (112)
T 1jm7_A 21 ILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQKK-GPSQCP--LCKNDITKRSLQESTRFSQLVEELLKIIC 91 (112)
T ss_dssp HTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSSS-SSCCCT--TTSCCCCTTTCBCCCSSSHHHHHHHHHHH
T ss_pred CCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhCC-CCCCCc--CCCCcCCHhhcCccHHHHHHHHHHHHHHH
Confidence 46799999987 6778899999999999944433211 347899 8999887655433 333455666655443
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=7e-07 Score=73.99 Aligned_cols=60 Identities=25% Similarity=0.588 Sum_probs=43.6
Q ss_pred CCcccccccccccCCCC--ceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhhc
Q 007763 139 GEEMTCGICFENYPSDR--LLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYLL 201 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~l 201 (590)
...+.|+||++.+.... ++.++|||.||..|+..+..... ....|| .|+..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP--~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCP--FCSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCT--TTCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCC--CCCCcccchhHHHH
Confidence 45688999999985433 78889999999999954433211 358999 79998866554433
No 16
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.28 E-value=6e-07 Score=79.14 Aligned_cols=83 Identities=19% Similarity=0.438 Sum_probs=56.7
Q ss_pred CCCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhhcCChHHHHHHHHHHHHH
Q 007763 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFIRS 217 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~ll~~e~~eky~~~l~~~ 217 (590)
....+.|+||++.+ .+++.++|||.||..|+..+.... ...|| .|+..+....+ ..... ++.
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP--~Cr~~~~~~~~---~~~~~--------l~~ 76 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA---GHKCP--VDNEILLENQL---FPDNF--------AKR 76 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH---CSBCT--TTCCBCCGGGC---EECHH--------HHH
T ss_pred CCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC---CCCCC--CCCCCcCHHhc---ccCHH--------HHH
Confidence 44578999999987 678889999999999995443321 23899 89988866432 11111 111
Q ss_pred HhhcCCCcccCCCCCCCceEeee
Q 007763 218 YVEDNRKTKWCPAPGCDYAVDFV 240 (590)
Q Consensus 218 ~v~~~~~~~~CP~p~C~~~i~~~ 240 (590)
.+. ...+.||+.+|...+...
T Consensus 77 ~i~--~l~v~C~n~gC~~~~~~~ 97 (118)
T 3hct_A 77 EIL--SLMVKCPNEGCLHKMELR 97 (118)
T ss_dssp HHH--TSEEECSSTTCCCEEEGG
T ss_pred HHc--cceeECCCCCCCCEEeeH
Confidence 122 135799999999887754
No 17
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.26 E-value=4.2e-07 Score=79.68 Aligned_cols=50 Identities=30% Similarity=0.723 Sum_probs=40.1
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
...+.|+||++.+ .+++.++|||.||..|+..+.... ...|| .|+..+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEKA---SLCCP--FCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCTT---TSBCT--TTCCBCHH
T ss_pred CCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhHC---cCCCC--CCCcccCc
Confidence 3468999999987 678889999999999995544332 37899 89998864
No 18
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.23 E-value=1.9e-07 Score=85.19 Aligned_cols=84 Identities=25% Similarity=0.479 Sum_probs=54.8
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHh------hcCChHHHHHHHH
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIY------LLSSDEDKVKYNR 212 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~------~ll~~e~~eky~~ 212 (590)
...+.|+||++.+ .+++.++|||.||..|+..+.... ...|| .|+..+...... .++....+
T Consensus 29 ~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~~---~~~CP--~Cr~~~~~~~~~~~l~~~~~~~d~~~----- 96 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSSG---PQNCA--ACVHEGIYEEGISILESSSAFPDNAA----- 96 (141)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGGS---CEECH--HHHHTTCCCTTTTEECGGGCEECHHH-----
T ss_pred CcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhcC---CCCCC--CCCCcccccccccccchhhhcccHHH-----
Confidence 4578999999987 678889999999999995554322 36899 788755322111 12222111
Q ss_pred HHHHHHhhcCCCcccCCCCCCCceEee
Q 007763 213 YFIRSYVEDNRKTKWCPAPGCDYAVDF 239 (590)
Q Consensus 213 ~l~~~~v~~~~~~~~CP~p~C~~~i~~ 239 (590)
+..+. ...++||+.+|...+..
T Consensus 97 ---~~~i~--~L~v~Cpn~GC~~~~~l 118 (141)
T 3knv_A 97 ---RREVE--SLPAVCPSDGCTWKGTL 118 (141)
T ss_dssp ---HHHHH--TSEEECCSTTCCCEEEH
T ss_pred ---HHHHc--ccccccCCCCCCCEeEH
Confidence 11121 23579999999987764
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.21 E-value=7.1e-07 Score=72.46 Aligned_cols=55 Identities=35% Similarity=0.692 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHhhcCC---CceecccCCCCCCCccchhH
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGP---GCLMLRCPDPSCGAAVGQDM 197 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~---~~~~i~CP~~~C~~~i~~~~ 197 (590)
...+.|+||++.+ .+++.++|||.||..|+..+.... ......|| .|+..+....
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP--~Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCP--VCGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCS--SSCCCCCSSG
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCC--CCCCcCCHhh
Confidence 4578999999987 668889999999999994433221 11358999 8999886543
No 20
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.21 E-value=6.6e-07 Score=76.55 Aligned_cols=65 Identities=20% Similarity=0.376 Sum_probs=45.8
Q ss_pred cccccccccccCCCCcee-cCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhhc-CChHHHHHHHH
Q 007763 141 EMTCGICFENYPSDRLLA-AACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYLL-SSDEDKVKYNR 212 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~l-l~~e~~eky~~ 212 (590)
.+.|+||++.+ .+++. ++|||.||..|+..+.... ...|| .|+..+....+... ...++.+.+.+
T Consensus 22 ~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP--~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 22 VFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ---RAQCP--HCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT---CSBCT--TTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred CCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC---cCCCC--CCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 57899999988 67888 9999999999995443322 26899 89999876554332 33344444433
No 21
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.9e-06 Score=65.49 Aligned_cols=44 Identities=30% Similarity=0.718 Sum_probs=33.6
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccC
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCP 185 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP 185 (590)
...+.|+||++.+ .+++.++|||.||..|+..+..... ....||
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP 56 (58)
T 2ecj_A 13 QVEASCSVCLEYL--KEPVIIECGHNFCKACITRWWEDLE-RDFPCP 56 (58)
T ss_dssp CCCCBCSSSCCBC--SSCCCCSSCCCCCHHHHHHHTTSSC-CSCCCS
T ss_pred ccCCCCccCCccc--CccEeCCCCCccCHHHHHHHHHhcC-CCCCCC
Confidence 4568899999988 5678899999999999965533211 357888
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.18 E-value=1.2e-06 Score=70.58 Aligned_cols=49 Identities=22% Similarity=0.567 Sum_probs=38.1
Q ss_pred CCcccccccccccCCCCceecC-CCCccchhhHHHhhcCCCceecccCCCCCCCcc
Q 007763 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAV 193 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i 193 (590)
...+.|+||++.+ .+++.++ |||.||..|+..+.... ....|| .|+..+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP--~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES--DEHTCP--TCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS--SSSCCS--SSCCSS
T ss_pred CCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc--CCCcCC--CCCCcC
Confidence 4578999999988 6788899 99999999994443321 146899 899864
No 23
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.17 E-value=5.7e-07 Score=79.95 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=39.1
Q ss_pred cccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
.+.|+||++.+ .+++.++|||.||..|+..+.... ...|| .|+..+..
T Consensus 52 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRAQ---VFSCP--ACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHTT---CCBCT--TTCCBCCT
T ss_pred CCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhHC---cCCCC--CCCccCCC
Confidence 57899999988 678999999999999995444332 36899 89998865
No 24
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.17 E-value=9e-07 Score=75.37 Aligned_cols=64 Identities=28% Similarity=0.569 Sum_probs=44.4
Q ss_pred cccccccccccCCCCceec-CCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHH-hhcCChHHHHHHHH
Q 007763 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMI-YLLSSDEDKVKYNR 212 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i-~~ll~~e~~eky~~ 212 (590)
.+.|+||++.+ .+++.+ +|||.||..|+..+.... ..|| .|+..+....+ .+....+++++|.+
T Consensus 22 ~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~----~~CP--~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 22 LLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSYK----TQCP--TCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTTC----CBCT--TTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHCC----CCCC--CCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 57899999988 567776 899999999996555432 6899 89998865332 22222344444443
No 25
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=8.3e-07 Score=75.10 Aligned_cols=55 Identities=20% Similarity=0.433 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCCceecC-CCCccchhhH-HHhhcC-CCceecccCCCCCCCc-cch
Q 007763 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCW-TAINDG-PGCLMLRCPDPSCGAA-VGQ 195 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~C~-~~i~~g-~~~~~i~CP~~~C~~~-i~~ 195 (590)
...+.|+||++.+ .+|+.++ |||.||+.|| ..+..+ .......||..+|+.. +..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 3578999999988 7899996 9999999999 444332 1113589998889976 543
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.7e-06 Score=70.74 Aligned_cols=49 Identities=27% Similarity=0.604 Sum_probs=39.2
Q ss_pred CCCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
....+.|+||++.+ .+++.++|||.||..|+..+... ...|| .|+..+.
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA----TPRCY--ICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH----CSBCS--SSCCBCC
T ss_pred CCCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC----CCcCC--CcCcccc
Confidence 34568899999988 66888999999999999554432 36899 8998875
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.9e-06 Score=66.91 Aligned_cols=45 Identities=33% Similarity=0.816 Sum_probs=34.1
Q ss_pred CCCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccC
Q 007763 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCP 185 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP 185 (590)
....+.|+||++.+ .+++.++|||.||..|+..+....+ ....||
T Consensus 17 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP 61 (63)
T 2ysj_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETSC-GFFKCP 61 (63)
T ss_dssp CCCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHHCS-SCCCCS
T ss_pred CccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHcCC-CCCcCc
Confidence 34578999999988 6788889999999999954443211 347898
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.3e-06 Score=69.89 Aligned_cols=52 Identities=29% Similarity=0.480 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCCceec-CCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHH
Q 007763 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMI 198 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i 198 (590)
...+.|+||++.+ .+++.+ +|||.||..|+..+... ...|| .|+..+....+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP--~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYY----SNRCP--KCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHH----CSSCT--TTCCCCCSSCS
T ss_pred CCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHc----CCcCC--CcCcccCcccc
Confidence 4578999999987 557776 99999999999544332 36899 89998865443
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.13 E-value=1.9e-06 Score=70.71 Aligned_cols=54 Identities=31% Similarity=0.607 Sum_probs=40.3
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHh-hcCC-CceecccCCCCCCCccchh
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAI-NDGP-GCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i-~~g~-~~~~i~CP~~~C~~~i~~~ 196 (590)
...+.|+||++.+ .+++.++|||.||..|+..+ .... ......|| .|+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP--~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTDGKGNCP--VCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCT--TTCCCCCTT
T ss_pred ccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCC--CCCCcCCHH
Confidence 4578999999987 66788999999999999433 3210 11358999 899888654
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.12 E-value=1.3e-06 Score=79.24 Aligned_cols=46 Identities=30% Similarity=0.756 Sum_probs=37.9
Q ss_pred cccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
.++|+||++.+ .+++.++|||.||..|+..+.... ..|| .|+..+.
T Consensus 53 ~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP--~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKRK----IECP--ICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTTC----SBCT--TTCCBCC
T ss_pred cCCCcccCccc--CCceECCCCCCccHHHHHHHHHcC----CcCC--CCCCcCC
Confidence 46799999988 678999999999999996665432 5799 8998774
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=6.6e-07 Score=70.06 Aligned_cols=55 Identities=25% Similarity=0.671 Sum_probs=39.1
Q ss_pred ccccccccc-ccCCC--CceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhh
Q 007763 141 EMTCGICFE-NYPSD--RLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 200 (590)
Q Consensus 141 ~~~C~IC~e-~~~~~--~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~ 200 (590)
...|+||++ .+... .++.++|||.||..|+..+.... ..+|| .|+..+....+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP--~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCP--ECGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCT--TTCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC---CCcCC--CCCCcccccccee
Confidence 568999999 55222 22568999999999996553322 36899 8999887655543
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.08 E-value=6.7e-07 Score=71.04 Aligned_cols=55 Identities=25% Similarity=0.742 Sum_probs=40.5
Q ss_pred CCcccccccccccCC-----CCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHh
Q 007763 139 GEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIY 199 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~ 199 (590)
.....|+||++.+.. ..++.++|||.||..|+..+.... ..|| .|+..+....+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP--~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCP--TCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCT--TTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCC--CCCCccChhhee
Confidence 456889999998732 223788999999999995554332 5899 899988765543
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.9e-06 Score=70.65 Aligned_cols=52 Identities=37% Similarity=0.767 Sum_probs=39.6
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHh-hc---CCCceecccCCCCCCCccchh
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAI-ND---GPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i-~~---g~~~~~i~CP~~~C~~~i~~~ 196 (590)
...+.|+||++.+ .+++.++|||.||..|+..+ .. +. ....|| .|+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~--~~~~CP--~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDK--GESSCP--VCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTT--SCCCCT--TTCCSSCSS
T ss_pred cCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCC--CCCcCC--CCCCccCHH
Confidence 4568999999987 56788899999999999333 22 11 258999 799888654
No 34
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.07 E-value=2.8e-06 Score=85.52 Aligned_cols=51 Identities=12% Similarity=0.043 Sum_probs=40.7
Q ss_pred CCCcccccccccccCCCCceecCCCCccchhhH-HHhhcCCCceecccCCCCCCCccchh
Q 007763 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCW-TAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~-~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
....+.|+||++.+ .+|++++|||+||..|+ ..+..+. ..|| .|+..+...
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~~----~~cP--~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRVG----HFNP--VTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHTC----SSCT--TTCCCCCGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHCC----CCCc--CCCCCCchh
Confidence 34679999999988 88999999999999999 4444432 2399 899988654
No 35
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.04 E-value=1.8e-06 Score=71.58 Aligned_cols=50 Identities=8% Similarity=-0.121 Sum_probs=40.8
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
...+.|+||++.+ .+++.++|||.||+.|+..+..+ ...|| .|+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~----~~~cP--~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN----SPTDP--FNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH----CSBCT--TTCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc----CCCCC--CCcCCCChH
Confidence 4579999999988 88999999999999999555443 25899 788888654
No 36
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.04 E-value=8.2e-07 Score=68.88 Aligned_cols=55 Identities=25% Similarity=0.713 Sum_probs=40.1
Q ss_pred CcccccccccccCC-----CCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHhh
Q 007763 140 EEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 200 (590)
Q Consensus 140 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~~ 200 (590)
+.+.|+||++.+.. ..++.++|||.||..|+..+... ...|| .|+..+....+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP--~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCP--TCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCT--TTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCC--CCCccCCccceee
Confidence 35789999998732 22377899999999999555432 25899 8999887655443
No 37
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.01 E-value=2.2e-06 Score=73.36 Aligned_cols=50 Identities=8% Similarity=-0.106 Sum_probs=41.4
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
...+.|+||++.+ .+|+.++|||.||+.|+..+..+. ..|| .|+..+...
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~~----~~cP--~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLNS----PTDP--FNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTSC----SBCS--SSCCBCCTT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHcC----CCCC--CCCCCCChh
Confidence 4579999999988 889999999999999996655542 5899 899888653
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=2.1e-06 Score=67.54 Aligned_cols=51 Identities=27% Similarity=0.808 Sum_probs=37.4
Q ss_pred CCCcccccccccccCC-----CCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 138 DGEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
......|+||++.+.. ..++.++|||.||..|+..+... ...|| .|+..|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCP--TCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCT--TTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCC--CCCCccC
Confidence 3456889999998732 12377899999999999555432 25899 8988764
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.00 E-value=2.3e-06 Score=78.80 Aligned_cols=49 Identities=24% Similarity=0.627 Sum_probs=39.4
Q ss_pred cccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
.+.|+||++.+ .+++.++|||.||..|+..+.... ...|| .|+..+...
T Consensus 78 ~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKAQ---VFSCP--ACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHTT---CCBCT--TTCCBCCTT
T ss_pred CCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHhC---CCcCC--CCCccCCCC
Confidence 57899999987 678889999999999994443332 36899 899988654
No 40
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.99 E-value=3.2e-06 Score=63.51 Aligned_cols=49 Identities=24% Similarity=0.624 Sum_probs=37.0
Q ss_pred CcccccccccccCC--CCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 140 EEMTCGICFENYPS--DRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 140 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
....|+||++.+.. ..++.++|||.||..|+..+.... ..|| .|+..++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCP--LCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCT--TSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCC--CCCCcCC
Confidence 45789999998743 346788999999999995544322 6899 7987663
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.97 E-value=2.6e-06 Score=73.67 Aligned_cols=48 Identities=23% Similarity=0.590 Sum_probs=38.2
Q ss_pred CcccccccccccCCCCceec-CCCCccchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
..+.|+||++.+ .+++.+ +|||.||..|+..+.... ..|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~----~~CP--~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETS----KYCP--ICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSC----SBCT--TTCCBSCS
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhC----CcCc--CCCccccc
Confidence 367899999988 568887 999999999995554432 6899 79987753
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.97 E-value=2.2e-06 Score=65.13 Aligned_cols=44 Identities=27% Similarity=0.575 Sum_probs=36.2
Q ss_pred CcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
..+.|+||++.+ .+++.++|||.||..|+.. ....|| .|+..+.
T Consensus 5 ~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~-------~~~~CP--~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEA--KCPKLLPCLHTLCSGCLEA-------SGMQCP--ICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSC--BCCSCSTTSCCSBTTTCSS-------SSSSCS--SCCSSSS
T ss_pred cCCCceEeCCcc--CCeEEcCCCCcccHHHHcc-------CCCCCC--cCCcEee
Confidence 467899999988 5788999999999999843 247899 8988764
No 43
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.94 E-value=3.5e-06 Score=74.08 Aligned_cols=45 Identities=24% Similarity=0.567 Sum_probs=37.2
Q ss_pred cccccccccccCCCCceec-CCCCccchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
.+.|+||++.+ .+++.+ +|||.||..|+..+.. ..|| .|+..+..
T Consensus 22 ~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~------~~CP--~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG------TGCP--VCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT------TBCS--SSCCBCSC
T ss_pred CCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc------CCCc--CCCCcCcc
Confidence 57899999988 678888 9999999999955433 6899 89988754
No 44
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.92 E-value=8.5e-06 Score=64.29 Aligned_cols=51 Identities=22% Similarity=0.473 Sum_probs=38.1
Q ss_pred CCcccccccccccCC-CCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 139 GEEMTCGICFENYPS-DRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
.....|+||++.+.. ..++.++|||.||..|+..+.... ..|| .|+..|..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN----KKCP--ICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC----SBCT--TTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC----CCCc--CcCccccC
Confidence 446789999998754 456778999999999995554332 3699 89987753
No 45
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.92 E-value=8.4e-06 Score=69.47 Aligned_cols=50 Identities=10% Similarity=-0.127 Sum_probs=41.1
Q ss_pred CCcccccccccccCCCCceecCCC-CccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 139 GEEMTCGICFENYPSDRLLAAACG-HPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
...+.|+||++.+ .+|+.++|| |.||+.||..+.... ..|| .|+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~~----~~cP--~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLSD----QTDP--FNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTTS----CBCT--TTCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHhC----CCCC--CCCCCCChh
Confidence 4579999999988 889999999 999999996555432 4799 899888654
No 46
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.91 E-value=6.5e-06 Score=66.64 Aligned_cols=53 Identities=25% Similarity=0.588 Sum_probs=39.9
Q ss_pred CCcccccccccccCCC-CceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhH
Q 007763 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDM 197 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~ 197 (590)
.....|+||++.+... .+..++|||.||..|+..+.... ..|| .|+..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP--~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH----DSCP--VCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT----CSCT--TTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC----CcCc--CcCCccCCcc
Confidence 4467899999988543 34567999999999996655432 5899 8998876543
No 47
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.88 E-value=5.3e-06 Score=82.25 Aligned_cols=53 Identities=26% Similarity=0.496 Sum_probs=41.7
Q ss_pred CcccccccccccCCCCceec-CCCCccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
..+.||||++.+ .+|++. .|||.||+.||..+.... ....||..+|+..+...
T Consensus 180 ~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEECGG
T ss_pred eeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCchh
Confidence 467899999988 788874 999999999995544432 24799977799988654
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.85 E-value=8.9e-06 Score=68.17 Aligned_cols=51 Identities=27% Similarity=0.579 Sum_probs=39.2
Q ss_pred CCcccccccccccCCC-CceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
.....|+||++.+... .++.++|||.||..|+..|.... ..|| .|+..+++
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS----GTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT----CBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC----CcCc--CcCccCCC
Confidence 3467899999988543 35678999999999996665443 4899 89988754
No 49
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.82 E-value=1.3e-05 Score=60.10 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=36.7
Q ss_pred CcccccccccccCCC-CceecC-CCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 140 EEMTCGICFENYPSD-RLLAAA-CGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
....|+||++.+... .++.++ |||.||..|+..+... ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCc--CCCCEeE
Confidence 356799999998543 356676 9999999999666543 25799 7987653
No 50
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=97.80 E-value=9.1e-06 Score=54.08 Aligned_cols=28 Identities=36% Similarity=0.918 Sum_probs=24.9
Q ss_pred CCCccccCCCCccCCCccccccccCCCC
Q 007763 563 DSSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 563 ~~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
+++.|.|.+|||.|......|.||..+|
T Consensus 3 ~~~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 3 TSAMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CSCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CCccccCCcccccCCCCCCccCCcCCCC
Confidence 3456999999999999999999998876
No 51
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=4.9e-06 Score=65.88 Aligned_cols=48 Identities=29% Similarity=0.731 Sum_probs=37.4
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
.....|+||++.+. . +.++|||.||..|+..+... ...|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~----~~~CP--~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR----HRNCP--ICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC----CSSCH--HHHHCTTC
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC----cCcCC--CcCCcccC
Confidence 44678999999874 3 88899999999999666543 36899 78776643
No 52
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.69 E-value=1.6e-05 Score=62.51 Aligned_cols=47 Identities=32% Similarity=0.648 Sum_probs=35.7
Q ss_pred cccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
...|+||++.+. +..+.++|||.||..|+..+... ...|| .|+..+.
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP--~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQ----NPTCP--LCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHH----SCSTT--TTCCCCC
T ss_pred CCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhC----cCcCc--CCChhhH
Confidence 567999999873 23478899999999999554432 25899 8998775
No 53
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=2.6e-05 Score=62.37 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=37.2
Q ss_pred CCcccccccccccCCC-CceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
.....|+||++.+... ....++|||.||..|+..+.... ..|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP--~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCP--LCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCT--TTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCC--CcCcccc
Confidence 4467899999998543 34556999999999995554322 3899 8998764
No 54
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.68 E-value=2.1e-05 Score=58.94 Aligned_cols=30 Identities=33% Similarity=0.803 Sum_probs=25.8
Q ss_pred CCCCCccccCCCCccCCCccccccccCCCC
Q 007763 561 IDDSSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 561 ~~~~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
..+.+.|.|..|||.|......|.||..+|
T Consensus 6 ~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr 35 (53)
T 2d9g_A 6 SGDEGYWDCSVCTFRNSAEAFKCMMCDVRK 35 (53)
T ss_dssp SSCCCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CCCCCCcCCCCCccCCCCCCCccCCCCCcC
Confidence 334557999999999999999999998765
No 55
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=97.65 E-value=2.9e-05 Score=57.75 Aligned_cols=27 Identities=33% Similarity=0.896 Sum_probs=24.1
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007763 564 SSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 564 ~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
+..|.|.+|||.|......|.||..+|
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~pr 34 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRAR 34 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCCC
T ss_pred CCCccCCCcccccCCCCCeeCCCCCcC
Confidence 346999999999999999999997765
No 56
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=1.8e-05 Score=63.58 Aligned_cols=50 Identities=28% Similarity=0.647 Sum_probs=37.6
Q ss_pred CcccccccccccCCCC-ceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 140 EEMTCGICFENYPSDR-LLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~-~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
....|+||++.+.... ++.++|||.||..|+..+.... ..|| .|+..+.+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~----~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN----RTCP--ICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC----SSCT--TTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC----CcCc--CcCCcCCC
Confidence 4578999999985433 4678999999999995554322 4799 89987754
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.63 E-value=1.7e-05 Score=74.83 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=40.1
Q ss_pred CCcccccccccccCCCCceecCCCCccchhhHH-HhhcCCCceecccCCCCCCCccchh
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWT-AINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~-~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
...+.||||++.+ .+|+.++|||.||..|+. .+..+. ..|| .|+..+...
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~~----~tcP--~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRVG----HFDP--VTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHTC----SBCT--TTCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhCC----CCCC--CCcCCCChh
Confidence 4689999999988 789999999999999994 444432 2699 899888654
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.62 E-value=2.4e-05 Score=62.89 Aligned_cols=43 Identities=30% Similarity=0.752 Sum_probs=35.8
Q ss_pred cccccccccccCCCCceecCCCCc-cchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
...|+||++.+ .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 24 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~--------~~CP--~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV--------DKCP--MCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC--------SBCT--TTCCBCSE
T ss_pred CCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC--------ccCC--CcCcCccC
Confidence 46799999986 67889999999 999999544 5899 89987753
No 59
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.62 E-value=2.6e-05 Score=72.64 Aligned_cols=48 Identities=25% Similarity=0.688 Sum_probs=37.2
Q ss_pred CcccccccccccCCCCceec-CCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
..+.|+||++.+ .+++.+ +|||.||..|+..+.... ...|| .|+..+.
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRSG---NKECP--TCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHTT---CCBCT--TTCCBCC
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHhC---cCCCC--CCCCcCC
Confidence 356899999988 567776 999999999995544321 36899 8998874
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=4.1e-05 Score=61.64 Aligned_cols=43 Identities=30% Similarity=0.752 Sum_probs=35.3
Q ss_pred cccccccccccCCCCceecCCCCc-cchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
...|+||++.+ .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 25 ~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~~--------~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV--------DKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHHC--------SBCT--TTCCBCCC
T ss_pred CCCCCcCCCCC--CCEEEecCCCHHHHHHHhhCC--------CCCc--cCCceecC
Confidence 45799999986 67888999999 999999532 5899 89987754
No 61
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.53 E-value=4.9e-05 Score=66.08 Aligned_cols=52 Identities=33% Similarity=0.593 Sum_probs=36.2
Q ss_pred cccccccccccCCC----------------CceecCCCCccchhhHHHhh-cCCCceecccCCCCCCCccc
Q 007763 141 EMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTAIN-DGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 141 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~i~-~g~~~~~i~CP~~~C~~~i~ 194 (590)
...|+||++.+... ....++|||.||..|+..+. .+.......|| .|+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP--~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP--SCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCT--TTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCC--CCCCccC
Confidence 45899999997431 11267899999999995543 22111357999 8998774
No 62
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=97.53 E-value=2.9e-05 Score=52.79 Aligned_cols=27 Identities=30% Similarity=0.886 Sum_probs=24.3
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007763 564 SSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 564 ~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
++.|.|.+|||.|......|.||..+|
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r 32 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPR 32 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBS
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcC
Confidence 346999999999999999999998765
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.32 E-value=7.4e-05 Score=58.30 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=36.6
Q ss_pred CCcccccccccccCCCCceec--CCCCc-cchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 139 GEEMTCGICFENYPSDRLLAA--ACGHP-FCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
.....|.||++.. .+++.+ +|||. ||..|...+.... -.|| .|+..+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CP--iCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKRN----KPCP--VCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHTT----CCCT--TTCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHcC----CcCC--CcCcchh
Confidence 3466899999976 555655 99999 8999996665432 4799 8998774
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.30 E-value=0.0001 Score=60.04 Aligned_cols=43 Identities=33% Similarity=0.757 Sum_probs=35.3
Q ss_pred cccccccccccCCCCceecCCCCc-cchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
...|+||++.. .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 18 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~--------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL--------QSCP--VCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC--------SBCT--TTCCBCCE
T ss_pred CCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc--------CcCC--CCCchhhC
Confidence 35799999976 67899999999 999999543 2899 89988754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00027 Score=55.80 Aligned_cols=45 Identities=22% Similarity=0.618 Sum_probs=36.5
Q ss_pred CCcccccccccccCCCCceecCCCCc-cchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 139 GEEMTCGICFENYPSDRLLAAACGHP-FCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
.....|.||++.. .+++.++|||. ||..|...+ ..|| .|+..|..
T Consensus 13 ~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~--------~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKYF--------QQCP--MCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHHC--------SSCT--TTCCCCCC
T ss_pred CCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhcC--------CCCC--CCCcchhc
Confidence 4467899999976 67899999999 999999632 5799 89987743
No 66
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.28 E-value=0.00011 Score=60.90 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=39.3
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccc-cCCCCCCCCcccCCchh
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQW-SDHGERTGGFYACNRYE 348 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w-~~H~~~~g~~y~C~~~~ 348 (590)
+-||.|..++....+-..++|. .|++.||+.|..+| ..|.. ..|..|+
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~-~C~~~FC~~C~~~w~~~H~~-----~sC~~~~ 74 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCP-QCHQTFCVRCKRQWEEQHRG-----RSCEDFQ 74 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECT-TTCCEECSSSCSBCCTTTTT-----SCHHHHH
T ss_pred eECcCCCchheecCCCCceEeC-CCCCccccccCCchhhcCCC-----CChHHHH
Confidence 5699999999888888889997 79999999999999 45543 3576553
No 67
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00021 Score=58.41 Aligned_cols=51 Identities=27% Similarity=0.494 Sum_probs=35.6
Q ss_pred CcccccccccccCC------------CCceec-CCCCccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 140 EEMTCGICFENYPS------------DRLLAA-ACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 140 ~~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
...+|+||++.+.. +.++.+ +|||.||..|+..+.... -.|| .|+..+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP--~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCP--LCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCT--TTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCC--CcCCCcchh
Confidence 45568888887732 224444 599999999997665443 3899 899877543
No 68
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.22 E-value=0.00011 Score=57.10 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=35.6
Q ss_pred CcccccccccccCCCCceec--CCCCc-cchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 140 EEMTCGICFENYPSDRLLAA--ACGHP-FCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
....|.||++.. .+++.+ +|||. ||..|...+.... -+|| .|+..+.
T Consensus 6 ~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CP--iCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKAG----ASCP--ICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHTT----CBCT--TTCCBCC
T ss_pred cCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHhC----CcCC--CcCchhh
Confidence 356899999875 445555 99998 9999996665432 5899 8998774
No 69
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.12 E-value=0.0001 Score=65.36 Aligned_cols=56 Identities=25% Similarity=0.724 Sum_probs=41.3
Q ss_pred CCCcccccccccccCC-----CCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchhHHh
Q 007763 138 DGEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDMIY 199 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~i~ 199 (590)
+.....|+||++.+.. ..++.++|||.||..|+..+... ...|| .|+..+....+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP--~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCP--TCRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCT--TTCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCC--CCCCcCChhcce
Confidence 3457889999998732 12378899999999999555433 25899 899998776554
No 70
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.06 E-value=0.00028 Score=74.14 Aligned_cols=49 Identities=31% Similarity=0.652 Sum_probs=38.5
Q ss_pred cccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
...|+||++.+ .+++.++|||.||..|+..+... ....|| .|+..+...
T Consensus 332 ~~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~---~~~~CP--~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES---EGQGCP--FCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH---TCSBCT--TTCCBCCEE
T ss_pred CCCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc---CCCCCC--CCCCccCCc
Confidence 36899999987 67899999999999999555441 135899 899887543
No 71
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.78 E-value=0.001 Score=57.29 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=36.3
Q ss_pred CcccccccccccCCC----------------CceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 140 EEMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
....|+||++.+... .++.++|+|.|+..|+..+... ...|| .|+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP--~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCP--LDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCS--SSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCc--CCCCcce
Confidence 456799999887532 1355789999999999766544 25899 8998753
No 72
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.73 E-value=0.00064 Score=55.47 Aligned_cols=40 Identities=28% Similarity=0.699 Sum_probs=34.9
Q ss_pred CcCCCC--CCcceeeccCCCceeecC----CCcceeeecccccccC
Q 007763 294 SKPCPR--CKRPIEKNQGCMHMTCTP----PCKFEFCWLCLGQWSD 333 (590)
Q Consensus 294 tK~CP~--C~~~IEK~~GCnhMtC~~----~C~~~FCw~C~~~w~~ 333 (590)
.+-||. |+..|....+...++|.. .|++.||+.|+.+|+.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 377987 999999888999999941 3999999999999976
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.62 E-value=0.00065 Score=70.72 Aligned_cols=43 Identities=28% Similarity=0.807 Sum_probs=36.2
Q ss_pred cccccccccccCCCCceecCCCCc-cchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
...|+||++.+ .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 295 ~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~--------~~CP--~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL--------RKCP--ICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC--------SBCT--TTCCBCCE
T ss_pred CCCCCccCCcC--CceEEcCCCChhHhHHHHhcC--------CcCC--CCCCCccC
Confidence 57899999987 67899999999 999999644 5799 89987753
No 74
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.0016 Score=53.05 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=39.5
Q ss_pred CCcccccccccccCCCCceecCCC-----CccchhhHHHhhcCCCceecccCCCCCCCccch
Q 007763 139 GEEMTCGICFENYPSDRLLAAACG-----HPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQ 195 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~ 195 (590)
.....|.||++.+...+...++|+ |.|...|+..|.... ....|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~--~~~~Cp--lCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS--DTRCCE--LCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH--CCSBCS--SSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC--CCCCCC--CCCCeeec
Confidence 345689999998866666678896 999999996554321 236899 89988754
No 75
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=96.37 E-value=0.0011 Score=44.34 Aligned_cols=28 Identities=32% Similarity=0.824 Sum_probs=23.6
Q ss_pred CCCccccCCCCccCCCccccccccCCCC
Q 007763 563 DSSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 563 ~~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
..+.|.|+.||+.|..++..|.+|.-+|
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpk 31 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPK 31 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCC
Confidence 3456999999999999999999997654
No 76
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=96.23 E-value=0.0016 Score=50.37 Aligned_cols=27 Identities=33% Similarity=0.896 Sum_probs=23.6
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007763 564 SSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 564 ~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
+..|.|.+|||.|......|.||.-+|
T Consensus 6 ~~~W~CP~CTf~N~p~~p~CEmC~~pr 32 (64)
T 3b08_B 6 PVGWQCPGCTFINKPTRPGCEMCCRAR 32 (64)
T ss_dssp CCSEECTTTCCEECTTCSBCTTTCCBC
T ss_pred CCCCcCCCccccCCCCCCccCcCCCCC
Confidence 345999999999999999999997654
No 77
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.50 E-value=0.0028 Score=55.48 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=0.8
Q ss_pred CcccccccccccCCC----------------CceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 140 EEMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
....|+||++.+... .++.++|+|.|+..|+..+... .-.|| -|+..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP--~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCP--LDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCC--CCCCeee
Confidence 346899999987431 1233589999999999665443 25799 8987653
No 78
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.78 E-value=0.013 Score=45.00 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=35.6
Q ss_pred cccccccccccCCCCceec-CCCCccchhhHHHhhcCCCceecccCCCCCCCccchhH
Q 007763 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDM 197 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~ 197 (590)
.+.|+|+++.+ .+++.+ ++||.|++.|+..+-...+ .|| ..+..+....
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~~----~cP--~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDTG----NDP--ITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHHS----BCT--TTCCBCCGGG
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhCC----CCc--CCcCCCChhh
Confidence 47899999987 688888 8999999999944332221 399 6777665443
No 79
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.36 E-value=0.026 Score=40.82 Aligned_cols=27 Identities=30% Similarity=0.727 Sum_probs=23.7
Q ss_pred CCCccccCCCCccCCCccccccccCCC
Q 007763 563 DSSHWYCDQCTYANVNSATACAMCQHS 589 (590)
Q Consensus 563 ~~~~~~c~~c~~~~~~~~~~c~~c~~~ 589 (590)
..+.|.|+-|.+.|..+...|-+|.-+
T Consensus 8 ~~g~W~C~~C~v~N~a~~~kC~aCetp 34 (47)
T 2ebq_A 8 VIGTWDCDTCLVQNKPEAIKCVACETP 34 (47)
T ss_dssp CSSSEECSSSCCEECSSCSBCSSSCCB
T ss_pred CCCceECCeeeccCccCCceecCcCCC
Confidence 345699999999999999999999654
No 80
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=94.21 E-value=0.017 Score=38.84 Aligned_cols=27 Identities=30% Similarity=0.804 Sum_probs=22.9
Q ss_pred CCCccccCCCCccCCCccccccccCCC
Q 007763 563 DSSHWYCDQCTYANVNSATACAMCQHS 589 (590)
Q Consensus 563 ~~~~~~c~~c~~~~~~~~~~c~~c~~~ 589 (590)
+.+.|.|+-|.+.|..+...|.+|..+
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCB
T ss_pred CCCceECCeeEeECccccCEEcccCCc
Confidence 445699999999999999999999765
No 81
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.09 E-value=0.079 Score=37.91 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcCH
Q 007763 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (590)
Q Consensus 79 ~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (590)
+.+.|.+...|.++++..|..+|...+||.+..+..||.++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679999999999999999999999999999999998753
No 82
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.80 E-value=0.041 Score=42.09 Aligned_cols=37 Identities=32% Similarity=0.848 Sum_probs=30.0
Q ss_pred CcccCCCCCCCceEeeecCCCcceeEe-c--CCCccccccCCCc
Q 007763 224 KTKWCPAPGCDYAVDFVVGSGNYDVTC-R--CSYSFCWNCTEEA 264 (590)
Q Consensus 224 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~--C~~~fC~~C~~~~ 264 (590)
+.+.|| .|...|+.. .+-..++| . |++.||+.|+.+|
T Consensus 5 ~~k~CP--~C~~~Iek~--~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKD--GGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT--TTCCCCSSC--CSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc--CCCCeeEeC--CCCCcEEECCCCcCCEEeeCcCCCc
Confidence 457898 599888764 35678899 5 9999999999876
No 83
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.79 E-value=0.16 Score=40.56 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=35.7
Q ss_pred CcccccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
....|.||++.+.... .-..|+|.|...|+..+.... ..-.|| .|+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~--~~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSN--AEPRCP--HCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTC--SSCCCT--TTCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhc--CCCCCC--CCcCcCC
Confidence 3567999999985432 223799999999996665433 136899 7987764
No 84
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.72 E-value=0.2 Score=38.48 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcCH
Q 007763 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (590)
Q Consensus 78 ~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (590)
.+++.|.+...|.+.++..|+.+|...+||.+..+..||.++
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 456779999999999999999999999999999999998764
No 85
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.71 E-value=0.1 Score=37.81 Aligned_cols=26 Identities=27% Similarity=0.801 Sum_probs=23.1
Q ss_pred CCccccCCCCccCCCccccccccCCC
Q 007763 564 SSHWYCDQCTYANVNSATACAMCQHS 589 (590)
Q Consensus 564 ~~~~~c~~c~~~~~~~~~~c~~c~~~ 589 (590)
.+.|.|+-|.+.|.-+...|-+|.-+
T Consensus 9 ~gsW~C~~C~v~N~a~~~kC~aC~~p 34 (47)
T 2ebr_A 9 EGSWDCELCLVQNKADSTKCLACESA 34 (47)
T ss_dssp CSSCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred CCeeECCeeecCCcCCcceecCcCCC
Confidence 45599999999999999999999655
No 86
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=91.50 E-value=0.22 Score=51.09 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=60.5
Q ss_pred ceEEeCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcCHHHHHHHcCC---CCCCCCCC-----C
Q 007763 66 NYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGL---LEKPAVQF-----P 137 (590)
Q Consensus 66 ~y~vl~~~~i~~~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~~~~~~~~gl---~~~~~~~~-----~ 137 (590)
...+|-++.....+++....= .-+|+.++-+- +.+..-+++ +..+.... .
T Consensus 247 e~~FlGpd~~V~~Lr~~l~~N----------------l~~Wd~d~si~------eNL~~IL~i~~fP~p~~~~~~~~~e~ 304 (381)
T 3k1l_B 247 SLKIIGPTEEVARLRHVLSDG----------------LSNWDSEMNIH------KNLLRMFDLCYFPMPDWSDGPKLDEE 304 (381)
T ss_dssp EEEEESSHHHHHHHHHHHHHH----------------HHTCCTTSCHH------HHHHHHTTCSSCCCCCGGGCCSCTTC
T ss_pred eeEEECChhHhHHHHHHHhhh----------------hhhcCccCCHH------HHHHHHhCccccCCCccccccccccc
Confidence 355677776655555544332 23677654332 334444565 32211111 1
Q ss_pred CCCcccccccccccCC-CCce-----ecCCCCccchhhHHHh----hcC---CCceecccCCCCCCCccchhH
Q 007763 138 DGEEMTCGICFENYPS-DRLL-----AAACGHPFCSSCWTAI----NDG---PGCLMLRCPDPSCGAAVGQDM 197 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~C~~~i----~~g---~~~~~i~CP~~~C~~~i~~~~ 197 (590)
......|+||++.+.. ..+. ...|||.|...|+..| ..+ .+...=.|| -|+..++-..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCccH
Confidence 2346689999998754 2221 3469999999999333 221 112235799 8999887543
No 87
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.24 E-value=0.12 Score=43.25 Aligned_cols=32 Identities=19% Similarity=0.643 Sum_probs=24.3
Q ss_pred cccccccccccCCCCcee--cCCCCccchhhHHHh
Q 007763 141 EMTCGICFENYPSDRLLA--AACGHPFCSSCWTAI 173 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~--l~CgH~fC~~C~~~i 173 (590)
...|+||.+.+. ...+. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCC-CCceEECCcCChHHhHHHCHHH
Confidence 578999997532 33444 899999999999653
No 88
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=90.03 E-value=0.16 Score=42.58 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=29.8
Q ss_pred cccccccccCCCCceecCCCCccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 143 TCGICFENYPSDRLLAAACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 143 ~C~IC~e~~~~~~~~~l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
-|++|--.+. .-...+||.|.||.+|...+.... .-.|| .|+..|.
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~~---~k~Cp--~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKKG---DKMCP--GCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHTT---CCBCT--TTCCBCS
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhcc---CCCCc--CcCCeee
Confidence 3777754331 234568999999999996554321 24688 7887663
No 89
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.99 E-value=0.03 Score=47.18 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=44.4
Q ss_pred ceeEe-cCCCccccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCC-CcceeeccCCCceeecCCCccee
Q 007763 246 YDVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRC-KRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 246 ~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C-~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
....| .|++.||..|...+|....-...+..+... .+. ......|+.+ +.+++ ++|. .|+...
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~-~~~------~~~~~~C~~H~~e~l~-------~fC~-~~~~~i 81 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPI-PDS------HIRGLMCLEHEDEKVN-------MYCV-TDDQLI 81 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCC-CSC------CSSCCCCSSCSSSCCC-------EEET-TTTEEE
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeeccc-ccc------CccCCcCcCcCCCcce-------EECC-CCCCcc
Confidence 34579 999999999997767632111111110000 000 0012579999 58888 9999 899999
Q ss_pred eecccc
Q 007763 324 CWLCLG 329 (590)
Q Consensus 324 Cw~C~~ 329 (590)
|+.|..
T Consensus 82 C~~C~~ 87 (101)
T 2jun_A 82 CALCKL 87 (101)
T ss_dssp CHHHHH
T ss_pred chhcCC
Confidence 999974
No 90
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.57 E-value=0.82 Score=35.58 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHhcCCChHHHHHHhhcCH
Q 007763 79 QEEDITRISTVLS-ISKVAASILLRFYNWSVSKVHDEWFADE 119 (590)
Q Consensus 79 ~~~~i~~v~~il~-i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (590)
+.+.|.+...|.+ .++..|+.+|...+||.+..+..||.+.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5567999999999 7899999999999999999999999763
No 91
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.09 E-value=0.76 Score=35.67 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcCH
Q 007763 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (590)
Q Consensus 81 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (590)
+.|.+...|.+.++..|+..|...+||.+..+..||.++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 468889999999999999999999999999999998753
No 92
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=87.23 E-value=0.69 Score=33.07 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHhcCCChHHHHHHhhc
Q 007763 79 QEEDITRISTVLSISK-VAASILLRFYNWSVSKVHDEWFA 117 (590)
Q Consensus 79 ~~~~i~~v~~il~i~~-~~a~~LL~~~~W~~~~l~e~~~~ 117 (590)
..+.|.+..+|+|+++ +.|+..|-..+||.+..+..|+.
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 4567889999999995 99999999999999988877653
No 93
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=87.15 E-value=0.12 Score=43.63 Aligned_cols=27 Identities=33% Similarity=0.858 Sum_probs=0.0
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007763 564 SSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 564 ~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
++.|.|+.|++.|..++..|.||..+|
T Consensus 7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr 33 (98)
T 3gj7_B 7 GSSWQCDTCLLQNKVTDNKCIACQAAK 33 (98)
T ss_dssp ---------------------------
T ss_pred CCcccCCccccCChhhcccccccCCCC
Confidence 445999999999999999999997654
No 94
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=85.41 E-value=0.29 Score=41.20 Aligned_cols=27 Identities=30% Similarity=0.804 Sum_probs=23.7
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007763 564 SSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 564 ~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
.+.|.|.-|++.|..+...|.+|..++
T Consensus 70 ~g~W~C~~C~~~N~~~~~~C~aC~tpk 96 (98)
T 3gj7_B 70 IGTWDCDTCLVQNKPEAVKCVACETPK 96 (98)
T ss_dssp -CCEECTTTCCEECTTCSBCTTTCCBC
T ss_pred CCcccCCcCcCCChhhcceecccCCCC
Confidence 456999999999999999999997664
No 95
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.28 E-value=1.3 Score=37.36 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcC
Q 007763 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (590)
Q Consensus 79 ~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (590)
+.+.|..|.++.+++.+.|+..|...+|++...++.++..
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4678999999999999999999999999999999988765
No 96
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.15 E-value=0.31 Score=37.14 Aligned_cols=33 Identities=24% Similarity=0.743 Sum_probs=23.5
Q ss_pred ecCCCccccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceeec
Q 007763 250 CRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKN 307 (590)
Q Consensus 250 C~C~~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK~ 307 (590)
=.|||.||..|... |.. .+...||.|+.++.++
T Consensus 24 ~~CgH~fC~~Ci~~------------~~~-------------~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 24 NVCGHTLCESCVDL------------LFV-------------RGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCCEEHHHHHH------------HHH-------------TTSSSCTTTCCCCSSC
T ss_pred CCCCCHhHHHHHHH------------HHH-------------cCCCcCCCCCCccccc
Confidence 37999999999733 221 1236899999998753
No 97
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=84.92 E-value=0.24 Score=41.55 Aligned_cols=35 Identities=20% Similarity=0.590 Sum_probs=29.0
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
-.||-|...+. +.++|. .|||.||+.|+..|-...
T Consensus 23 ~~C~IC~~~~~-----~p~~~~-~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCP-HCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp TBCTTTCSBCS-----SEEECT-TTCCEEEHHHHHHHHHHT
T ss_pred CCCccCCcccc-----CccccC-CCCChhhHHHHHHHHHHC
Confidence 58999999886 357777 799999999999986543
No 98
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.59 E-value=2.1 Score=32.15 Aligned_cols=26 Identities=23% Similarity=0.685 Sum_probs=23.1
Q ss_pred CCccccCCCCccCCCccccccccCCC
Q 007763 564 SSHWYCDQCTYANVNSATACAMCQHS 589 (590)
Q Consensus 564 ~~~~~c~~c~~~~~~~~~~c~~c~~~ 589 (590)
.+.|-|+-|-+.|.-+...|-.|.-+
T Consensus 29 ~GsWeC~~C~V~N~a~~~kC~ACetp 54 (57)
T 2ebv_A 29 IGSWECSVCCVSNNAEDNKCVSCMSE 54 (57)
T ss_dssp SSSCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred CCeeeCCeeEccCccCCceeeEcCCc
Confidence 45599999999999999999999755
No 99
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.45 E-value=0.57 Score=36.70 Aligned_cols=37 Identities=24% Similarity=0.717 Sum_probs=26.3
Q ss_pred eeEe-cCCCccccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceeeccC
Q 007763 247 DVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQG 309 (590)
Q Consensus 247 ~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK~~G 309 (590)
.+.. .|++.||..|... |+... ..||-|+..|....|
T Consensus 38 ~~~~l~C~H~fh~~Ci~~------------w~~~~--------------~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 38 LLRVLPCNHEFHAKCVDK------------WLKAN--------------RTCPICRADSGPSSG 75 (75)
T ss_dssp EEEEETTTEEEETTHHHH------------HHHHC--------------SSCTTTCCCCCCCCC
T ss_pred eEEEECCCCHhHHHHHHH------------HHHcC--------------CcCcCcCCcCCCCCC
Confidence 3444 7999999988633 43221 689999999987665
No 100
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=83.37 E-value=0.51 Score=38.11 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=34.6
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcce-----eeecccccccCCCCCCCCcccCCch
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFE-----FCWLCLGQWSDHGERTGGFYACNRY 347 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~-----FCw~C~~~w~~H~~~~g~~y~C~~~ 347 (590)
..||.|+.+|+.++| +..|. .|+.. ||-.|+++......-....|.||.-
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~-~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C 57 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCE-TCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNG 57 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECT-TTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTT
T ss_pred CCCCCCCCccccCCC--ceECc-cccccCCCcccCcchhhHHHHHHhcCCcCeeeccC
Confidence 579999999999888 55688 78754 7999988764322111135777754
No 101
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=82.87 E-value=0.71 Score=35.02 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=32.6
Q ss_pred CcccccccccccCCCCceecCC--CC---ccchhhHHHhhcCCCceecccCCCCCCCccc
Q 007763 140 EEMTCGICFENYPSDRLLAAAC--GH---PFCSSCWTAINDGPGCLMLRCPDPSCGAAVG 194 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~C--gH---~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~ 194 (590)
....|.||++.. ++...+|| .| .|...|+..+.... ....|| .|+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~--~~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTIS--RNTACQ--ICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHH--TCSBCT--TTCCBCC
T ss_pred CCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhC--CCCccC--CCCCeee
Confidence 456799999874 33345675 44 89999995553321 137899 8987764
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.70 E-value=1.2 Score=35.53 Aligned_cols=55 Identities=22% Similarity=0.556 Sum_probs=38.1
Q ss_pred CCCCCcccccccccccCCCCceecC--CCCccchhhH-HHhhcCCCceecccCCC-CCC
Q 007763 136 FPDGEEMTCGICFENYPSDRLLAAA--CGHPFCSSCW-TAINDGPGCLMLRCPDP-SCG 190 (590)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~C~-~~i~~g~~~~~i~CP~~-~C~ 190 (590)
.++...+.|.+|-+.+....++..| =.|.||..|- ..|........+.||.. .|.
T Consensus 10 ~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCp 68 (93)
T 2cs3_A 10 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCP 68 (93)
T ss_dssp SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCB
T ss_pred CCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccc
Confidence 3456678999999998666666665 4799999999 55543211246888863 454
No 103
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=82.46 E-value=0.76 Score=30.52 Aligned_cols=25 Identities=28% Similarity=0.915 Sum_probs=22.8
Q ss_pred ccccCCCCccCCCccccccccCCCC
Q 007763 566 HWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 566 ~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
-|.|..|.+.|-..-..|.+|..|+
T Consensus 6 DW~C~~C~~~Nfa~R~~C~~C~~pk 30 (33)
T 2k1p_A 6 DWQCKTCSNVNWARRSECNMCNTPK 30 (33)
T ss_dssp SCBCSSSCCBCCTTCSBCSSSCCBT
T ss_pred CcccCCCCCccccccccccccCCcC
Confidence 3999999999999999999998765
No 104
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=81.65 E-value=3.2 Score=32.52 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHhcCCChHHHHHHhhcC
Q 007763 78 RQEEDITRISTVL-SISKVAASILLRFYNWSVSKVHDEWFAD 118 (590)
Q Consensus 78 ~~~~~i~~v~~il-~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (590)
.+...|.+|.++| .+..+++..+|.+|+-|++.++...+++
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5678899999998 6899999999999999999999987764
No 105
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=80.93 E-value=0.5 Score=39.21 Aligned_cols=50 Identities=22% Similarity=0.503 Sum_probs=36.5
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcce-----eeecccccccCCCCCCCCcccCCch
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFE-----FCWLCLGQWSDHGERTGGFYACNRY 347 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~-----FCw~C~~~w~~H~~~~g~~y~C~~~ 347 (590)
..||.|+.+++.++| +.+|. .|+.. ||.-|.++......-.-..|.|+.-
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~-~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~c 87 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCR-SCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHG 87 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEET-TTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTT
T ss_pred ccCccCCCcceecCC--EEECc-cccchhhccccCcchhhHHHHHHHhcCcchhhccC
Confidence 799999999999988 67799 89865 5999998865433211145777754
No 106
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.46 E-value=1 Score=33.27 Aligned_cols=27 Identities=30% Similarity=0.795 Sum_probs=21.8
Q ss_pred cCCCccccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceee
Q 007763 251 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 306 (590)
Q Consensus 251 ~C~~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK 306 (590)
.|||.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 69999999998551 1789999998863
No 107
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=79.38 E-value=0.68 Score=30.52 Aligned_cols=26 Identities=23% Similarity=0.809 Sum_probs=23.1
Q ss_pred CccccCCCCccCCCccccccccCCCC
Q 007763 565 SHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 565 ~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
+-|.|..|.+.|-..-..|..|..+|
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~~C~~pr 29 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCFRCGADK 29 (32)
T ss_dssp SEEECTTTCCEEETTCCBCTTTCCBT
T ss_pred CCCCcCcCcCCcChhcceecCCCCcC
Confidence 44999999999999999999998764
No 108
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=78.37 E-value=0.6 Score=42.70 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=27.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+. +.++.. +|||.||+.|...|-..
T Consensus 55 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTK-ECLHRFCADCIITALRS 88 (165)
T ss_dssp HBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHHT
T ss_pred CCCcccChHhh-----CcCEeC-CCCChhHHHHHHHHHHh
Confidence 47999988887 357775 59999999999998654
No 109
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=77.43 E-value=4.3 Score=27.54 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHh
Q 007763 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEW 115 (590)
Q Consensus 80 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~ 115 (590)
.+.|.++.+. |.++..|+..|+..+||++...+.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888886 9999999999999999999877644
No 110
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.32 E-value=0.98 Score=34.91 Aligned_cols=32 Identities=28% Similarity=0.701 Sum_probs=25.4
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
..||-|...+. +.++- +|||.||+.|+..|-.
T Consensus 21 ~~C~IC~~~~~-----~~~~~--~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEEC--TTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEc--CCCChhhHHHHHHHHH
Confidence 58999988776 23444 4999999999999875
No 111
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=76.55 E-value=28 Score=32.94 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHcccc
Q 007763 505 NYFENLVRALENGLS 519 (590)
Q Consensus 505 ~~~~~l~~~le~gl~ 519 (590)
+|+.+|.+.|++=++
T Consensus 191 ~y~~kl~~~i~~~~~ 205 (207)
T 3bvo_A 191 RYFSNIEEKIKLKKI 205 (207)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888888776443
No 112
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.30 E-value=0.67 Score=35.98 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=26.3
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+.. .++-. +|||.||+.|...|-..
T Consensus 16 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTIT-ECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GSCTTTSSCCSS-----CEECS-SSCCEECHHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEEC-CCCCHHHHHHHHHHHHc
Confidence 589999887763 45554 59999999999988643
No 113
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=76.02 E-value=0.92 Score=38.24 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=27.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
-.||-|...+. +.++.. +|||.||+.|...|-..+
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTII-ECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp TBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHTSC
T ss_pred CCCccCChHHh-----CcCEeC-CCCChhhHHHHHHHHHhC
Confidence 68999988876 356665 599999999999986543
No 114
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.97 E-value=0.71 Score=34.72 Aligned_cols=33 Identities=27% Similarity=0.677 Sum_probs=25.8
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+. +.++- +|||.||+.|+..|-..
T Consensus 21 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGET 53 (63)
T ss_dssp CBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHH
T ss_pred CCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHc
Confidence 57999988776 23444 49999999999998653
No 115
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=75.82 E-value=0.98 Score=40.01 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=26.3
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
-.||-|...+. +.++. +|||.||..|...|-...
T Consensus 54 ~~C~iC~~~~~-----~~~~~--~CgH~fc~~Ci~~~~~~~ 87 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTL--NCAHSFCSYCINEWMKRK 87 (138)
T ss_dssp SBCTTTCSBCS-----SEEEE--TTSCEEEHHHHHHHTTTC
T ss_pred CCCcccCcccC-----CceEC--CCCCCccHHHHHHHHHcC
Confidence 47999998775 23454 499999999999987554
No 116
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.92 E-value=0.8 Score=34.83 Aligned_cols=32 Identities=22% Similarity=0.543 Sum_probs=25.0
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
..||-|...+. +.++ . +|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLC-----SPKQ-T-ECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEES-----SCCC-C-SSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhc-----CeeE-C-CCCCHHHHHHHHHHHH
Confidence 57999988775 2244 3 5999999999999874
No 117
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=73.77 E-value=1.1 Score=37.04 Aligned_cols=34 Identities=21% Similarity=0.548 Sum_probs=27.1
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+.. .++.. +|||.||..|...|-..
T Consensus 23 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 56 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIP-QCSHNYCSLCIRKFLSY 56 (99)
T ss_dssp TBCTTTCSBCSS-----EEECT-TTCCEEEHHHHHHHHTT
T ss_pred CCcccCChhhCC-----cCEEC-CCCCHhhHHHHHHHHHC
Confidence 689999988763 45554 59999999999998754
No 118
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=73.04 E-value=1.3 Score=36.67 Aligned_cols=27 Identities=26% Similarity=0.811 Sum_probs=23.4
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007763 564 SSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 564 ~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
.+.|.|..|++.|.-+...|.+|..++
T Consensus 63 ~g~W~C~~C~~~N~a~~~~C~~C~~pk 89 (92)
T 3gj8_B 63 EGSWDCEVCLVQNKADSTKCIACESAK 89 (92)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCBC
T ss_pred CCcccCCcCCcCChhhcccccccCCCC
Confidence 456999999999999999999997653
No 119
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=72.94 E-value=0.72 Score=38.23 Aligned_cols=26 Identities=23% Similarity=0.756 Sum_probs=0.0
Q ss_pred CccccCCCCccCCCccccccccCCCC
Q 007763 565 SHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 565 ~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
+.|.|..|++.|..+...|.+|..+|
T Consensus 7 g~W~C~~C~~~N~~~~~~C~~C~~pk 32 (92)
T 3gj8_B 7 GSWECPVCCVSNKAEDSRCVSCTSEK 32 (92)
T ss_dssp --------------------------
T ss_pred cCCCCCcCCCEeccccceecccCCCC
Confidence 35999999999999999999997654
No 120
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=72.58 E-value=2.5 Score=30.50 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=21.4
Q ss_pred CcCCCCCCc-ceeeccCCCceeecCCCccee
Q 007763 294 SKPCPRCKR-PIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 294 tK~CP~C~~-~IEK~~GCnhMtC~~~C~~~F 323 (590)
...||.|+. .|.-+..=..+.|. .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~-~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA-KCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES-SSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc-ccCCcc
Confidence 468999998 88776666668887 676544
No 121
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=72.50 E-value=1.5 Score=35.64 Aligned_cols=36 Identities=25% Similarity=0.649 Sum_probs=28.9
Q ss_pred CcCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 294 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 294 tK~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
.-+||.|+....+..+=..+.|. .|++.|- ++.|..
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~-~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCS-YCDYKFT---GGSYKP 62 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEET-TTCCEEE---CCSSSS
T ss_pred cCcCCCCCCcceeccCCCeEECC-CCCCEec---CCEecc
Confidence 36899999999999888899999 7988774 445543
No 122
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=72.28 E-value=1.3 Score=34.76 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=26.0
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+. +.++- +|||.||..|...|-..
T Consensus 9 ~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTT
T ss_pred CCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHH
Confidence 57999988775 23554 49999999999998764
No 123
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.22 E-value=0.98 Score=35.79 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=29.4
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCCCCCCCcccCCc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNR 346 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~~~~g~~y~C~~ 346 (590)
-.||-|...+.. .+.- +|||.||..|+..|-......++...|+.
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSA--DCNHSFCRACITLNYESNRNTDGKGNCPV 64 (85)
T ss_dssp TSCTTTCSCCSS-----CEEC--TTSCCBCHHHHHHHHHHSBCTTSCBCCTT
T ss_pred CCCcCCChhhCc-----ceeC--CCCCHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 579999887753 2443 49999999999988543211122345654
No 124
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=71.56 E-value=2.3 Score=33.11 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.4
Q ss_pred cCCCCCCcceeeccCCCceeecCCCccee
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
-.||.|+.+++-+.+...++|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSR-QAKLAY 36 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5899999999988888888998 676655
No 125
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.49 E-value=0.93 Score=36.36 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=26.7
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
-.||-|...+...... .+.- +|||.||+.|...|-...
T Consensus 16 ~~C~IC~~~~~~~~~~-~~~~--~CgH~fC~~Ci~~~~~~~ 53 (88)
T 2ct2_A 16 LECPICMESFTEEQLR-PKLL--HCGHTICRQCLEKLLASS 53 (88)
T ss_dssp CBCTTTCCBCCTTSSC-EEEC--SSSCEEEHHHHHHHHHHC
T ss_pred CCCccCCccccccCCC-eEEC--CCCChhhHHHHHHHHHcC
Confidence 5799998877643211 2333 499999999999986543
No 126
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=71.31 E-value=1.1 Score=38.80 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=25.1
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.||-|...+. +.++- +|||.||..|+..|-.
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHh
Confidence 57999988776 33443 4999999999988865
No 127
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=71.17 E-value=2.1 Score=36.43 Aligned_cols=34 Identities=21% Similarity=0.544 Sum_probs=25.7
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
-.||-|...+.. .++- +|||.||..|+..|-.++
T Consensus 16 ~~C~iC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~~ 49 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTL--PCNHTLCKPCFQSTVEKA 49 (115)
T ss_dssp HBCTTTCSBCSS-----CEEC--TTSCEECHHHHCCCCCTT
T ss_pred CCCccCCcccCc-----eeEc--CCCCHHhHHHHHHHHhHC
Confidence 479999877752 2333 499999999999997653
No 128
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=71.06 E-value=1.2 Score=34.77 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=25.8
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+. +.++-. .|||.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALLE 49 (74)
T ss_dssp GSCSSSCCCCT-----TCEECS-SSCCEECTTHHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcC-CCCCHHHHHHHHHHHHh
Confidence 57999988776 234432 39999999999998653
No 129
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=70.92 E-value=1.5 Score=31.62 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=26.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
..||-|...+...+ ..+... +|+|.||+.|+..|-..
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~-~CgH~fc~~Ci~~~~~~ 42 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVL-PCGHLLHRTCYEEMLKE 42 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEEC-TTSCEEETTHHHHHHHH
T ss_pred CcCcccChhhcCCC--cCeEec-CCCCcccHHHHHHHHHc
Confidence 67999988775321 234555 69999999999998643
No 130
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=70.83 E-value=1.2 Score=33.97 Aligned_cols=36 Identities=25% Similarity=0.631 Sum_probs=26.4
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
..||-|...+.... .+... +|+|.||+.|+..|-..
T Consensus 15 ~~C~IC~~~~~~~~---~~~~~-~C~H~fc~~Ci~~~~~~ 50 (69)
T 2kiz_A 15 EKCTICLSILEEGE---DVRRL-PCMHLFHQVCVDQWLIT 50 (69)
T ss_dssp CSBTTTTBCCCSSS---CEEEC-TTSCEEEHHHHHHHHHH
T ss_pred CCCeeCCccccCCC---cEEEe-CCCCHHHHHHHHHHHHc
Confidence 68999988775322 14444 59999999999999654
No 131
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=70.44 E-value=1.1 Score=35.82 Aligned_cols=35 Identities=29% Similarity=0.863 Sum_probs=23.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeeccccccc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 332 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~ 332 (590)
..||-|.-++... .-..+.|. |||.||..|+..+.
T Consensus 12 ~~CpICle~~~~~-d~~~~p~~--CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPCT--CGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSST--TSCCCCHHHHHHHT
T ss_pred CcCCccCccCccc-cccccccC--CCCCcCHHHHHHHH
Confidence 5799999877421 11223354 99999999987654
No 132
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=69.21 E-value=2.6 Score=30.42 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=27.1
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
..||-|...+..... .+.-. .|+|.||..|+..|-..
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~-~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLP-RCGHGFHAECVDMWLGS 42 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECS-SSCCEECTTHHHHTTTT
T ss_pred CcCccCCccccCCCc--eEECC-CCCCcccHHHHHHHHHc
Confidence 679999888764432 23333 49999999999999654
No 133
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.08 E-value=1.3 Score=37.32 Aligned_cols=34 Identities=26% Similarity=0.645 Sum_probs=25.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
-.||-|...+. +.++ . +|||.||+.|...|-...
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~ 55 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQK 55 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSS
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhC
Confidence 68999998775 2244 3 599999999999886543
No 134
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=68.68 E-value=1.6 Score=33.10 Aligned_cols=33 Identities=27% Similarity=0.884 Sum_probs=25.0
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
..||-|...+.. ...-. +|||.||+.|...|-.
T Consensus 6 ~~C~IC~~~~~~-----~~~~~-~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 6 ERCPICLEDPSN-----YSMAL-PCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCSSCCSCCCS-----CEEET-TTTEEESTTHHHHHHH
T ss_pred CCCeeCCccccC-----CcEec-CCCCeeHHHHHHHHHh
Confidence 689999888752 23445 6999999999988864
No 135
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=68.45 E-value=1.9 Score=33.76 Aligned_cols=33 Identities=18% Similarity=0.595 Sum_probs=25.4
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+.. .++- +|||.||..|...|-..
T Consensus 13 ~~C~IC~~~~~~-----p~~l--~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSL--DCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCC--SSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeEC--CCCCHHHHHHHHHHHHh
Confidence 469999877652 3443 49999999999998765
No 136
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.43 E-value=1.7 Score=33.50 Aligned_cols=34 Identities=32% Similarity=0.722 Sum_probs=25.4
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
..||-|...+.. .++- +|+|.||+.|...|-..+
T Consensus 16 ~~C~IC~~~~~~-----~~~~--~CgH~fC~~Ci~~~~~~~ 49 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSL--PCKHVFCYLCVKGASWLG 49 (71)
T ss_dssp CBCSSSSSBCSS-----EEEE--TTTEEEEHHHHHHCTTCS
T ss_pred CCCccCCcccCC-----CEEc--cCCCHHHHHHHHHHHHCC
Confidence 579999877642 2444 499999999999986543
No 137
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=66.06 E-value=1.2 Score=48.74 Aligned_cols=22 Identities=36% Similarity=0.866 Sum_probs=0.0
Q ss_pred cccCCCCccCCCccccccccCC
Q 007763 567 WYCDQCTYANVNSATACAMCQH 588 (590)
Q Consensus 567 ~~c~~c~~~~~~~~~~c~~c~~ 588 (590)
-.|++|||.|-.+-..|.||.-
T Consensus 181 ~~CP~CTF~NHPsl~~CEiCg~ 202 (566)
T 1w7p_D 181 NICPACTFANHPQIGNCEICGH 202 (566)
T ss_dssp ----------------------
T ss_pred CCCCcccccCChhhhcccccCC
Confidence 5799999999999999999953
No 138
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.78 E-value=2.5 Score=36.08 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=25.1
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.||-|...+. +.++-. +|||.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc
Confidence 68999988775 234442 4999999999988854
No 139
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=65.57 E-value=1.9 Score=32.10 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=20.6
Q ss_pred CcCCCCCCcceeeccCCCceeecCCCccee
Q 007763 294 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 294 tK~CP~C~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
.+.||+|+..+--...-+..+|. +|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~-kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCG-RCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECT-TTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECC-CCCCEE
Confidence 48899999855422334678998 798764
No 140
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=65.37 E-value=1.4 Score=33.79 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=27.4
Q ss_pred cCCCCCCcceeec-cCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKN-QGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~-~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
..||-|...+... .+=..+.-. +|||.||+.|...|-..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 50 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc
Confidence 6799998887643 111223444 69999999999998643
No 141
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=64.97 E-value=4 Score=39.75 Aligned_cols=50 Identities=20% Similarity=0.437 Sum_probs=35.5
Q ss_pred cccccccccccCCCCceec-CCCCccchhhHHHhhcCCCceecccCCCCCCCccchh
Q 007763 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQD 196 (590)
Q Consensus 141 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~ 196 (590)
...|.||.+.+... ... .|+|.|...|+..+.... ....|| .|+..++..
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~--~~~~CP--~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN--AEPRCP--HCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC--SSCBCT--TTCCBCCSC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC--CCCCCC--CCCCCCCCC
Confidence 56799999987533 333 399999999995544332 247899 899877543
No 142
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=64.53 E-value=5 Score=29.13 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=23.6
Q ss_pred CCCccccCCCCccCCCccccccccCCCC
Q 007763 563 DSSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 563 ~~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
..-.|.|..|.--|+.-...|.-|..-|
T Consensus 8 ~eD~WkC~~C~k~N~Pl~ryC~rCwaLR 35 (53)
T 2cr8_A 8 SEDEWQCTECKKFNSPSKRYCFRCWALR 35 (53)
T ss_dssp CSCCEECSSSCCEECSSCCBCTTTCCBC
T ss_pred CcceeecccccccCCCccchhHHHHHhh
Confidence 3445999999999999999999996543
No 143
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=63.89 E-value=2.1 Score=33.50 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=21.9
Q ss_pred cCCCc-cccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceee
Q 007763 251 RCSYS-FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 306 (590)
Q Consensus 251 ~C~~~-fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK 306 (590)
.|||. ||..|...| +.||-|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 89999 999997543 689999999874
No 144
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.88 E-value=1.5 Score=32.10 Aligned_cols=32 Identities=22% Similarity=0.770 Sum_probs=24.8
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.||-|...+.. .+. . +|||.||+.|+..|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKE-----PVI-I-ECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSS-----CCC-C-SSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCc-----cEe-C-CCCCccCHHHHHHHHH
Confidence 579999887763 234 3 5999999999999853
No 145
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=63.72 E-value=1.9 Score=36.13 Aligned_cols=24 Identities=33% Similarity=0.877 Sum_probs=15.6
Q ss_pred CCCCCCccee---eccCCCceeecCCCc
Q 007763 296 PCPRCKRPIE---KNQGCMHMTCTPPCK 320 (590)
Q Consensus 296 ~CP~C~~~IE---K~~GCnhMtC~~~C~ 320 (590)
-||+|..||- +.-=|+|++|. .|-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCy-dCa 29 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCY-DCA 29 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEH-HHH
T ss_pred ecCccCCCeEEEeeeccccccHHH-HHH
Confidence 5999999997 23345555555 444
No 146
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.55 E-value=1.8 Score=32.75 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=26.1
Q ss_pred cCCCCCCcceeeccC-CCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQG-CMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~G-CnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
..||-|...+..... -..+.-. +|||.||..|+..|-.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHH
Confidence 579999887764321 1222334 5999999999999854
No 147
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=63.43 E-value=3.2 Score=29.50 Aligned_cols=26 Identities=23% Similarity=0.696 Sum_probs=23.9
Q ss_pred cCCCCCC-cceeeccCCCceeecCCCcceeeeccc
Q 007763 295 KPCPRCK-RPIEKNQGCMHMTCTPPCKFEFCWLCL 328 (590)
Q Consensus 295 K~CP~C~-~~IEK~~GCnhMtC~~~C~~~FCw~C~ 328 (590)
..|+.++ .++. ++|. .|+...||.|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~ 33 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCK 33 (48)
T ss_dssp CBCSSSTTSBCC-------EEET-TTTEEECHHHH
T ss_pred CcCCCCCCcccc-------EEcC-CCCeeEccccc
Confidence 5799999 8888 9999 89999999996
No 148
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.29 E-value=3.5 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=18.6
Q ss_pred CcCCCCCCcceeeccCCCceeecCCCccee
Q 007763 294 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 294 tK~CP~C~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
.+.||+|+..+.-...=+.+.|. .||+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~-kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACG-KCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECS-SSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECC-CCCCEE
Confidence 37899998854422222668888 788653
No 149
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.06 E-value=2 Score=34.03 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=25.4
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+.. .++ . +|||.||+.|...|-..
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVV-T-KCRHYFCESCALEHFRA 48 (81)
T ss_dssp SBCSSSCSBCCS-----EEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCcCCCchhcC-----eeE-c-cCCCHhHHHHHHHHHHC
Confidence 579999888752 344 3 59999999999988653
No 150
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=63.05 E-value=3.8 Score=29.75 Aligned_cols=27 Identities=19% Similarity=0.556 Sum_probs=24.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 329 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~ 329 (590)
..||.++.+++ ++|. .|+...|+.|..
T Consensus 9 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 35 (53)
T 2did_A 9 SLCPQHHEALS-------LFCY-EDQEAVCLICAI 35 (53)
T ss_dssp CBCTTTCCBCC-------EEES-SSCSEECHHHHT
T ss_pred CcChhhCCeee-------EEeC-CCCeEEeccccC
Confidence 68999999999 9999 899999999975
No 151
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=61.88 E-value=6.7 Score=40.98 Aligned_cols=32 Identities=25% Similarity=0.711 Sum_probs=23.4
Q ss_pred ecCCCccccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceee
Q 007763 250 CRCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 306 (590)
Q Consensus 250 C~C~~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK 306 (590)
-.|||.||..|... |+. .....||.|+.+|..
T Consensus 348 lpCGH~FC~~Ci~~------------wl~-------------~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 348 EPCGHLMCTSCLTS------------WQE-------------SEGQGCPFCRCEIKG 379 (389)
T ss_dssp ETTCCEECHHHHHH------------HHH-------------HTCSBCTTTCCBCCE
T ss_pred eCCCChhhHHHHHH------------HHh-------------cCCCCCCCCCCccCC
Confidence 38999999998633 322 123789999999874
No 152
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=61.62 E-value=7.7 Score=38.48 Aligned_cols=43 Identities=12% Similarity=0.332 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcCHH
Q 007763 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEE 120 (590)
Q Consensus 78 ~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~~ 120 (590)
.+++.|.+...+.+.++..|+..|..++|+.+..++.||.++.
T Consensus 14 ~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 3667899999999999999999999999999999999997653
No 153
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.46 E-value=2.3 Score=32.47 Aligned_cols=31 Identities=32% Similarity=0.896 Sum_probs=24.6
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
..||-|...+.. +. . +|+|.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~------~~-~-~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 16 EECCICMDGRAD------LI-L-PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCSSSCCSCCS------EE-E-TTTEEECHHHHHHSSC
T ss_pred CCCeeCCcCccC------cc-c-CCCCcccHHHHHHHHH
Confidence 679999887653 33 3 5999999999999865
No 154
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=61.39 E-value=3.5 Score=32.03 Aligned_cols=31 Identities=26% Similarity=0.736 Sum_probs=27.3
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
..||.++.+++ ++|. .|+...|+.|.. ..|.
T Consensus 19 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~--~~H~ 49 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQ-TDQTCICYLCMF--QEHK 49 (72)
T ss_dssp CBCTTTCCBCC-------EEES-SSCCEECHHHHH--TTTS
T ss_pred CcCcccCCceE-------EEeC-CCCeEEccccCC--CCCC
Confidence 68999999998 9999 899999999985 5554
No 155
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=61.19 E-value=3.3 Score=32.35 Aligned_cols=36 Identities=25% Similarity=0.629 Sum_probs=24.7
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
..||-|...+.... .+.-. +|+|.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~~~~---~~~~~-~C~H~fc~~Ci~~~~~~ 51 (78)
T 2ect_A 16 LECPVCKEDYALGE---SVRQL-PCNHLFHDSCIVPWLEQ 51 (78)
T ss_dssp CCCTTTTSCCCTTS---CEEEC-TTSCEEETTTTHHHHTT
T ss_pred CCCeeCCccccCCC---CEEEe-CCCCeecHHHHHHHHHc
Confidence 68999987765322 12223 49999999999988643
No 156
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=60.93 E-value=2.3 Score=38.36 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=26.3
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
-.||-|...+. +.++ . +|||.||+.|+..|-.++
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~~ 112 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKAQ 112 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHhC
Confidence 57999988775 3355 3 599999999999887653
No 157
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=60.89 E-value=2.2 Score=38.02 Aligned_cols=32 Identities=19% Similarity=0.633 Sum_probs=25.7
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.||-|...+. +.++. .|||.||..|...|-.
T Consensus 32 ~~C~IC~~~~~-----~pv~~--~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQA--QCGHRYCSFCLASILS 63 (141)
T ss_dssp GBCTTTCSBCS-----SEEEC--TTSCEEEHHHHHHHGG
T ss_pred cCCCCCChhhc-----CcEEC--CCCCccCHHHHHHHHh
Confidence 57999998775 33665 4999999999999864
No 158
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=60.71 E-value=1.9 Score=32.02 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=26.5
Q ss_pred cCCCCCCcceeecc-CCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQ-GCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~-GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+.... +=..+.-. +|||.||..|...|-..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc
Confidence 46888888776431 11223444 59999999999998643
No 159
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=60.54 E-value=9.4 Score=27.09 Aligned_cols=26 Identities=27% Similarity=0.841 Sum_probs=23.0
Q ss_pred CccccC--CCCccCCCccccccccCCCC
Q 007763 565 SHWYCD--QCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 565 ~~~~c~--~c~~~~~~~~~~c~~c~~~~ 590 (590)
+-|.|. .|.+.|-..-..|-.|..+|
T Consensus 13 GDW~C~~~~C~~~Nfa~R~~C~~C~~pr 40 (45)
T 1n0z_A 13 GDWICPDKKCGNVNFARRTSCDRCGREK 40 (45)
T ss_dssp SSCBCSSTTTCCBCCSSCSBCSSSCCBC
T ss_pred CCcCCCCCCCCCEEccccccccccCCcC
Confidence 349999 89999999999999998765
No 160
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.33 E-value=2.3 Score=33.49 Aligned_cols=32 Identities=25% Similarity=0.665 Sum_probs=24.3
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.||-|...+.. .++- +|||.||..|+..|-.
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSL--DCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCTTTCSCCSS-----CBCC--SSSCCBCTTHHHHHHH
T ss_pred CCCCCCCcccCC-----ceeC--CCCCHHHHHHHHHHHH
Confidence 579999888752 2343 4999999999988754
No 161
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=59.59 E-value=47 Score=35.61 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHc
Q 007763 505 NYFENLVRALEN 516 (590)
Q Consensus 505 ~~~~~l~~~le~ 516 (590)
..++++.+.||+
T Consensus 176 ~sY~~~QKQLeQ 187 (562)
T 3ghg_A 176 KDYEDQQKQLEQ 187 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666666664
No 162
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=59.45 E-value=1.8 Score=35.13 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=24.5
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.||-|...+. +.++-. .|||.||..|+..|-.
T Consensus 14 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECS-----SCEECT-TTCCEECHHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECC-CCCCHHHHHHHHHHHH
Confidence 57999987765 234442 3999999999998853
No 163
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=58.96 E-value=5.4 Score=27.29 Aligned_cols=27 Identities=15% Similarity=0.450 Sum_probs=24.8
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 329 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~ 329 (590)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 4 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 30 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCK-DDGTLSCVICRD 30 (42)
T ss_dssp CCCCSSCSSCC-------CCCC-SSSSSSCCTTSS
T ss_pred ccchhhCCeee-------EEeC-CCCeEEeccCCC
Confidence 67999999998 9999 899999999975
No 164
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.62 E-value=17 Score=29.71 Aligned_cols=48 Identities=29% Similarity=0.764 Sum_probs=33.7
Q ss_pred CcccccccccccCCC---Cc-eec-CCCCccchhhHHH-hhcCCCceecccCCCCCCCcc
Q 007763 140 EEMTCGICFENYPSD---RL-LAA-ACGHPFCSSCWTA-INDGPGCLMLRCPDPSCGAAV 193 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~---~~-~~l-~CgH~fC~~C~~~-i~~g~~~~~i~CP~~~C~~~i 193 (590)
....|.||-+.+... ++ +.. .|+-..|+.|+.+ ..+|. -.|| +|+..+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~----q~Cp--qCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGT----QNCP--QCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSC----SSCT--TTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccC----cccc--ccCCcc
Confidence 456899999986532 23 333 3888999999944 45554 6899 898765
No 165
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.31 E-value=1.5e+02 Score=30.60 Aligned_cols=15 Identities=13% Similarity=-0.188 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhhhhc
Q 007763 427 VECRRVLKWTYAYGY 441 (590)
Q Consensus 427 ~~~R~~L~~sy~~~y 441 (590)
.-||+.=+-+++.++
T Consensus 158 d~c~~~C~~sC~~~l 172 (390)
T 1deq_A 158 DIKIRSCKGSCSRAL 172 (390)
T ss_pred HHHhcccccccchhh
Confidence 444544444444433
No 166
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=57.44 E-value=3.6 Score=34.69 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=23.5
Q ss_pred cCCCccccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceeec
Q 007763 251 RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKN 307 (590)
Q Consensus 251 ~C~~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK~ 307 (590)
.|+|.||..|... |+..... .....||-|+..+.+.
T Consensus 60 ~C~H~Fh~~Ci~~------------wl~~~~~---------~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 60 KCSHAFHLLCLLA------------MYCNGNK---------DGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SSCCEECHHHHHH------------HHHHTCC---------SSCCBCTTTCCBSSSC
T ss_pred CCCCcccHHHHHH------------HHHcccC---------CCCCcCCCCCCccCCC
Confidence 7999999999744 3311100 1126899999988754
No 167
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.04 E-value=3.3 Score=31.99 Aligned_cols=36 Identities=25% Similarity=0.643 Sum_probs=25.7
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
..||-|...+..... +.-. +|+|.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~~~~~---~~~~-~C~H~f~~~Ci~~~~~~ 51 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE---LGIC-PCKHAFHRKCLIKWLEV 51 (74)
T ss_dssp CBCSSSCCBCCSSSC---EEEE-TTTEEEEHHHHHHHHHH
T ss_pred CCCcCCCcccCCCCc---EEEc-CCCCEecHHHHHHHHHc
Confidence 579999888764322 2222 49999999999998644
No 168
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=56.86 E-value=5 Score=28.66 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=26.8
Q ss_pred cCCCCC-CcceeeccCCCceeecCCCcceeeecccccccCCC
Q 007763 295 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 295 K~CP~C-~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H~ 335 (590)
..||.+ +.++. ++|. .|+...|+.|.. ..|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~~~~~iC~~C~~--~~H~ 38 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCE-SCDTLTCRDCQL--NAHK 38 (50)
T ss_dssp CBCSSSTTCBCC-------EEET-TTTEEECHHHHH--TTTT
T ss_pred CcCcCCCCCCEE-------EEeC-CCCEEEecccCC--CcCC
Confidence 579999 89998 9999 899999999976 3564
No 169
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.43 E-value=5.6 Score=29.70 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=24.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 329 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~ 329 (590)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 15 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 41 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQ-EDGKVICWLCER 41 (59)
T ss_dssp SBCTTTCCBCC-------EEET-TTCSEECHHHHT
T ss_pred ccChhhCceee-------eecC-CCCcEEecccCC
Confidence 57999999998 9999 899999999975
No 170
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=56.35 E-value=20 Score=24.75 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhc
Q 007763 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (590)
Q Consensus 81 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (590)
+.|.++.+ +|.+...|...|+..+||++...+-.+.
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45677766 5999999999999999999988776553
No 171
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.27 E-value=77 Score=32.60 Aligned_cols=12 Identities=25% Similarity=0.291 Sum_probs=4.7
Q ss_pred HHHHhHHHHHHH
Q 007763 460 EAESGLERLHQC 471 (590)
Q Consensus 460 ~le~~~E~L~~~ 471 (590)
+||..++-|.+.
T Consensus 117 eLe~~i~~lk~~ 128 (390)
T 1deq_A 117 DLRSRIEILRRK 128 (390)
T ss_pred HHHHHHHHHHHH
Confidence 333343333333
No 172
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=55.94 E-value=2.2 Score=34.80 Aligned_cols=36 Identities=28% Similarity=0.554 Sum_probs=25.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
..||-|...+.... .+.-. +|+|.||+.|...|-..
T Consensus 41 ~~C~IC~~~~~~~~---~~~~l-~C~H~Fh~~Ci~~wl~~ 76 (91)
T 2l0b_A 41 MCCPICCSEYVKGD---VATEL-PCHHYFHKPCVSIWLQK 76 (91)
T ss_dssp SEETTTTEECCTTC---EEEEE-TTTEEEEHHHHHHHHTT
T ss_pred CCCcccChhhcCCC---cEEec-CCCChHHHHHHHHHHHc
Confidence 56999987765332 13334 59999999999999653
No 173
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=55.82 E-value=4.9 Score=30.22 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=24.6
Q ss_pred cCCCCC-CcceeeccCCCceeecCCCcceeeecccc
Q 007763 295 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLG 329 (590)
Q Consensus 295 K~CP~C-~~~IEK~~GCnhMtC~~~C~~~FCw~C~~ 329 (590)
..||.+ +.+++ ++|. .|+...|+.|..
T Consensus 9 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 36 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCKV 36 (64)
T ss_dssp CCCSSCTTCCCC-------SEES-SSCCCCCSHHHH
T ss_pred CcCcCcCCCccc-------eEcC-cCCceeCccccC
Confidence 579999 89999 9999 899999999964
No 174
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=55.42 E-value=3.6 Score=32.68 Aligned_cols=26 Identities=27% Similarity=0.892 Sum_probs=21.6
Q ss_pred cCCCc-cccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceee
Q 007763 251 RCSYS-FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 306 (590)
Q Consensus 251 ~C~~~-fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK 306 (590)
.|||. ||..|...+ +.||-|+.+|.+
T Consensus 35 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 35 PCGHTVCCESCAAQL------------------------------QSCPVCRSRVEH 61 (79)
T ss_dssp TTCBCCBCHHHHTTC------------------------------SBCTTTCCBCCE
T ss_pred CCCCHHHHHHHHHhc------------------------------CcCCCCCchhhC
Confidence 79999 999997532 489999999984
No 175
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=55.30 E-value=3.2 Score=35.51 Aligned_cols=33 Identities=24% Similarity=0.659 Sum_probs=25.6
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+.. .++. +|||.||+.|...|-..
T Consensus 19 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 51 (118)
T 3hct_A 19 YECPICLMALRE-----AVQT--PCGHRFCKACIIKSIRD 51 (118)
T ss_dssp GBCTTTCSBCSS-----EEEC--TTSCEEEHHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEEC--CcCChhhHHHHHHHHhh
Confidence 579999988762 3554 49999999999988643
No 176
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.97 E-value=24 Score=25.28 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhc
Q 007763 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (590)
Q Consensus 80 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (590)
.+.|.++.+. |.+...|...|+..+||+++..+-.+.
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3456666554 899999999999999999999877654
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=54.47 E-value=7.6 Score=37.84 Aligned_cols=30 Identities=3% Similarity=-0.198 Sum_probs=18.4
Q ss_pred CcccCCCCCCCceEeeecCCCcceeEecCCCccccccCC
Q 007763 224 KTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCTE 262 (590)
Q Consensus 224 ~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~ 262 (590)
....||- |..++. ..|+-.||++||..|..
T Consensus 207 ~~~~c~i--~~~~~~-------dPv~~~~gh~f~~~~i~ 236 (281)
T 2c2l_A 207 DYLCGKI--SFELMR-------EPCITPSGITYDRKDIE 236 (281)
T ss_dssp STTBCTT--TCSBCS-------SEEECSSCCEEETTHHH
T ss_pred cccCCcC--cCCHhc-------CCeECCCCCEECHHHHH
Confidence 3456774 554432 12344799999998863
No 178
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=53.72 E-value=3.5 Score=35.01 Aligned_cols=33 Identities=24% Similarity=0.599 Sum_probs=26.2
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccCC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
-.||-|...+. +.++ . +|||.||+.|...|-..
T Consensus 24 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 24 ISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKV 56 (116)
T ss_dssp TBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhH
Confidence 68999998876 2355 3 59999999999988654
No 179
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=52.46 E-value=8.8 Score=29.81 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=20.8
Q ss_pred cCCCCCCcceeeccCCCceeecCCCccee
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
-.||.|+.+++-+.+=..++|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICK-GDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5799999999876554567887 566555
No 180
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=52.06 E-value=9.4 Score=29.81 Aligned_cols=28 Identities=25% Similarity=0.628 Sum_probs=21.5
Q ss_pred cCCCCCCcceeeccCCCceeecCCCccee
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
-.||.|+.+++-+.+=..++|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCN-ADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcC-CCCcee
Confidence 5799999999876555668887 676655
No 181
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=51.83 E-value=7.3 Score=36.36 Aligned_cols=69 Identities=17% Similarity=0.382 Sum_probs=41.4
Q ss_pred ccccccccccCCCC----ceec-CCCCccchhhH---H----HhhcCCCceecccCCCCCCCccchhHHhhcCChHHHHH
Q 007763 142 MTCGICFENYPSDR----LLAA-ACGHPFCSSCW---T----AINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVK 209 (590)
Q Consensus 142 ~~C~IC~e~~~~~~----~~~l-~CgH~fC~~C~---~----~i~~g~~~~~i~CP~~~C~~~i~~~~i~~ll~~e~~ek 209 (590)
..|+||-..+..++ ++.. .|..-|...|. . .+...+....+.|| .|...-++. ++..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCHH-HHHHHHHHHHHH
Confidence 45999998876654 4554 48888999998 1 22211111258999 898766543 444444455444
Q ss_pred HHHH
Q 007763 210 YNRY 213 (590)
Q Consensus 210 y~~~ 213 (590)
+.+.
T Consensus 80 l~~v 83 (183)
T 3lqh_A 80 LKQV 83 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 182
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=51.29 E-value=22 Score=27.88 Aligned_cols=36 Identities=8% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhc
Q 007763 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (590)
Q Consensus 81 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (590)
+.|.++.+ ++.+...|...|+..+||++..++.++.
T Consensus 31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34555655 4899999999999999999999887665
No 183
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=50.61 E-value=34 Score=25.47 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhc
Q 007763 77 QRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (590)
Q Consensus 77 ~~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (590)
..+.+.|..++...++....+...|...+||-++.+..|..
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45778899999999999999999999999999998887743
No 184
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=50.54 E-value=8.1 Score=29.59 Aligned_cols=28 Identities=21% Similarity=0.675 Sum_probs=21.9
Q ss_pred CcCCCCCCcceeeccCCCceeecCCCcceeeecc
Q 007763 294 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 327 (590)
Q Consensus 294 tK~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C 327 (590)
+.+|..|++.+... -+.|+ |+..||-.=
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT----GFMCR--CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT----CEECS--SSCEECTTT
T ss_pred CCcChhhCCccCcc----CEEee--cCCEecccc
Confidence 37899999987744 27897 999999653
No 185
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=50.15 E-value=11 Score=29.44 Aligned_cols=28 Identities=18% Similarity=0.515 Sum_probs=20.8
Q ss_pred cCCCCCCcceeeccCCCceeecCCCccee
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
-.||.|+.+++-..+=..++|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISK-GAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEET-TTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5899999999866554568887 576555
No 186
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=49.61 E-value=41 Score=25.18 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhh
Q 007763 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWF 116 (590)
Q Consensus 78 ~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~ 116 (590)
.+.+.|..++...++...-+...|...+||-++.+..|.
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567889999999999999999999999999999988763
No 187
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=49.60 E-value=7.3 Score=27.72 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=25.8
Q ss_pred CCCCCCccccCCCCccCCCccccccccCCCC
Q 007763 560 NIDDSSHWYCDQCTYANVNSATACAMCQHSR 590 (590)
Q Consensus 560 ~~~~~~~~~c~~c~~~~~~~~~~c~~c~~~~ 590 (590)
+......|.|-.|.--|+...+.|.-|..-|
T Consensus 7 di~~~D~WkC~~C~~~N~Pl~r~C~rCw~LR 37 (46)
T 2c6a_A 7 EISLADYWKCTSCNEMNPPLPSHCNRCWALR 37 (46)
T ss_dssp SSCGGGCEECTTTCCEECSSCSSCTTTCCCC
T ss_pred ccCccceEecccccccCCCccchhhHHHhhc
Confidence 4445567999999999999999999997644
No 188
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.51 E-value=7.2 Score=28.89 Aligned_cols=27 Identities=19% Similarity=0.587 Sum_probs=24.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 329 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~ 329 (590)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 45 (57)
T 2egm_A 19 GICPKHQEALK-------LFCE-VDEEAICVVCRE 45 (57)
T ss_dssp SBCTTTCCBCC-------EEET-TTTEEECHHHHH
T ss_pred CcChhhCceee-------EEcC-CCCcEEecccCC
Confidence 57999999999 9999 899999999975
No 189
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=48.07 E-value=8.4 Score=30.36 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=21.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 327 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C 327 (590)
.+|..|++.+...+ +.|+ |+..||-.=
T Consensus 26 nRC~~CrKkvgL~g----f~Cr--Cg~~FCs~H 52 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCR--CGNLFCGLH 52 (74)
T ss_dssp TBCSSSCCBCGGGC----EECT--TSCEECSSS
T ss_pred CcChhhCCcccccC----eecC--CCCEechhc
Confidence 58999999888552 7898 999999653
No 190
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=47.90 E-value=14 Score=33.33 Aligned_cols=35 Identities=29% Similarity=0.669 Sum_probs=24.6
Q ss_pred CCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceeeccCCCceeecCCCc
Q 007763 265 HRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCK 320 (590)
Q Consensus 265 H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK~~GCnhMtC~~~C~ 320 (590)
=+|..|..+++-. .+ |+||+|.-+++ ++.|+..||
T Consensus 96 lRPAicdkAR~KQ----------q~-----k~CpnC~g~L~------~~~Crgh~G 130 (174)
T 1odh_A 96 LRPAICDKARQKQ----------QR-----KSCPNCNGPLK------LIPCRGHGG 130 (174)
T ss_dssp ECCCSSHHHHHHH----------HH-----SBCSSSCCBEE------EECCCTBTT
T ss_pred echHHHHHHHHHh----------hc-----CCCCCCCccee------eEeccCcCC
Confidence 4688998776421 11 99999999998 677874343
No 191
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.50 E-value=7.3 Score=30.84 Aligned_cols=18 Identities=22% Similarity=0.757 Sum_probs=15.1
Q ss_pred CCcceeeecccccccCCC
Q 007763 318 PCKFEFCWLCLGQWSDHG 335 (590)
Q Consensus 318 ~C~~~FCw~C~~~w~~H~ 335 (590)
.|+|.|+..|+..|-...
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC
T ss_pred CCCCccChHHHHHHHHhC
Confidence 499999999999996543
No 192
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=46.41 E-value=13 Score=31.71 Aligned_cols=29 Identities=14% Similarity=0.522 Sum_probs=23.3
Q ss_pred CcCCCCCCcceeec----cCCCceeecCCCccee
Q 007763 294 SKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 323 (590)
Q Consensus 294 tK~CP~C~~~IEK~----~GCnhMtC~~~C~~~F 323 (590)
.+-||.|+.++.-. .|.+.+.|+ +|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~-~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACR-NCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECS-SSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECC-CCCCeE
Confidence 47899999987532 368899999 899877
No 193
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.77 E-value=97 Score=33.27 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 007763 451 RQFFEYLQGEAESGLERLHQCAEKELQIYLN 481 (590)
Q Consensus 451 ~~~fe~~Q~~le~~~E~L~~~le~~l~~~~~ 481 (590)
...+.-||..|+.++.++ +.||.+|..-++
T Consensus 130 lsnIrvLQsnLedq~~kI-QRLEvDIdiqir 159 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDM-KRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 355566666666666665 356777766553
No 194
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.55 E-value=32 Score=25.92 Aligned_cols=37 Identities=27% Similarity=0.216 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcCH
Q 007763 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (590)
Q Consensus 82 ~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (590)
.|.++.+ ++.+...|...|+..+||++...+-++.+.
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 12 CVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4556655 599999999999999999999888776543
No 195
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.85 E-value=30 Score=27.87 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcCH
Q 007763 83 ITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (590)
Q Consensus 83 i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 119 (590)
|.++.+ +|.+...|+..|+..+||+++..+-+|.+.
T Consensus 33 I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 33 INQLVY-MGFDTVVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHH-HSCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 444444 489999999999999999999988776643
No 196
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=44.80 E-value=14 Score=28.62 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=21.4
Q ss_pred cCCCCCCcceeeccCCCceeecCCCccee
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
-.||.|+.+++-+..=+.+.|. .|+..|
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~-~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNE-RLNLAY 38 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcC-CCCccc
Confidence 5899999999876554568887 676665
No 197
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=44.78 E-value=5.8 Score=36.10 Aligned_cols=32 Identities=22% Similarity=0.564 Sum_probs=26.0
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.||-|..++. +.+++. |||.||..|...|-.
T Consensus 19 ~~C~IC~~~~~-----~pv~~~--CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 19 YECPICLMALR-----EAVQTP--CGHRFCKACIIKSIR 50 (170)
T ss_dssp GBCTTTCSBCS-----SEEECT--TSCEEEHHHHHHHHH
T ss_pred CCCCCCChhhc-----CcEECC--CCCHHHHHHHHHHHH
Confidence 57999998886 336764 999999999998854
No 198
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=44.69 E-value=15 Score=27.74 Aligned_cols=41 Identities=27% Similarity=0.679 Sum_probs=28.7
Q ss_pred cccccccccCCCCcee-cCCCCccchhhHHHhhcCCCceecccCCCCC
Q 007763 143 TCGICFENYPSDRLLA-AACGHPFCSSCWTAINDGPGCLMLRCPDPSC 189 (590)
Q Consensus 143 ~C~IC~e~~~~~~~~~-l~CgH~fC~~C~~~i~~g~~~~~i~CP~~~C 189 (590)
.|-.|...++....+. ..|++.||.+|=..|-+.. -.|| +|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~L----h~CP--gC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSL----HSCP--GC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTS----CSSS--TT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhc----cCCc--CC
Confidence 4888887775333233 3599999999998776653 3688 66
No 199
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=42.88 E-value=12 Score=28.75 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=21.5
Q ss_pred CcCCCCCCcceeeccCCCceeecCCCcceeeecc
Q 007763 294 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 327 (590)
Q Consensus 294 tK~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C 327 (590)
..+|..|++.+... -+.|+ |+..||-.=
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKCK--CGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS----CEECT--TSCEECSSS
T ss_pred CCcChhhCCccccc----CeEee--cCCEecccC
Confidence 36899999987643 27897 999999653
No 200
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=41.00 E-value=13 Score=32.87 Aligned_cols=30 Identities=13% Similarity=0.494 Sum_probs=23.2
Q ss_pred cCcCCCCCCccee-ec---cCCCceeecCCCccee
Q 007763 293 NSKPCPRCKRPIE-KN---QGCMHMTCTPPCKFEF 323 (590)
Q Consensus 293 ntK~CP~C~~~IE-K~---~GCnhMtC~~~C~~~F 323 (590)
..+-||.|+.++- +. .|.+.+.|+ +|++.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~Cr-tCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCS-SSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECC-CCCCcE
Confidence 3589999998874 22 368899999 898865
No 201
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=40.26 E-value=40 Score=24.40 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCC-CHHHHHHHHHhcCCChHHHHHHhhcC
Q 007763 81 EDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (590)
Q Consensus 81 ~~i~~v~~il~i-~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (590)
+.|.++.+. |. +...+...|+..+||++..++..+.+
T Consensus 14 ~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 14 QQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 456666654 78 88899999999999999998877654
No 202
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.25 E-value=11 Score=28.78 Aligned_cols=31 Identities=35% Similarity=0.785 Sum_probs=23.9
Q ss_pred cccCCCCCCCceEeeecCCCcceeEe-cCCCccccccCC
Q 007763 225 TKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTE 262 (590)
Q Consensus 225 ~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 262 (590)
...|+.++|... ....+.| .|+..||..++.
T Consensus 12 ~~~Cs~~~Ck~~-------~ll~f~C~~C~~~FC~~HR~ 43 (63)
T 1x4v_A 12 TNKCERAGCRQR-------EMMKLTCERCSRNFCIKHRH 43 (63)
T ss_dssp CCCCCSTTCCCC-------CSSCCBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCCCC-------CccceECCCCCcccCcccCC
Confidence 468998899854 2345789 699999999874
No 203
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=40.06 E-value=13 Score=29.49 Aligned_cols=27 Identities=22% Similarity=0.424 Sum_probs=24.5
Q ss_pred cCCCCC-CcceeeccCCCceeecCCCcceeeecccc
Q 007763 295 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLG 329 (590)
Q Consensus 295 K~CP~C-~~~IEK~~GCnhMtC~~~C~~~FCw~C~~ 329 (590)
..||.+ +.+++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 46 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCV-SDDQLICALCKL 46 (84)
T ss_dssp CCCSSCSSSCCC-------EEET-TTTEEECHHHHH
T ss_pred CcCcCcCCcccc-------EEcC-CCCceEcccCcC
Confidence 579999 68899 9999 899999999975
No 204
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.03 E-value=14 Score=29.90 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=21.4
Q ss_pred CcCCCCCCcceeeccCCCceeecCCCcceeeec
Q 007763 294 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWL 326 (590)
Q Consensus 294 tK~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~ 326 (590)
...|..|++.+-... -+.|+ |+..||-.
T Consensus 25 ~~rC~~C~kkvgl~~---~f~Cr--Cg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLAT---SFECR--CGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSS---CEECT--TCCEECTT
T ss_pred CccchhhCCeecccC---CeEcC--CCCEeccc
Confidence 368999998766432 38897 99999965
No 205
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=39.96 E-value=55 Score=23.70 Aligned_cols=40 Identities=8% Similarity=0.157 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHhcCCChHHHHHHhhcC
Q 007763 78 RQEEDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (590)
Q Consensus 78 ~~~~~i~~v~~il~i-~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (590)
...+.|.++.+. |. +...+...|+..+||+++.++..+..
T Consensus 10 ~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 10 RFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 445667777664 77 89999999999999999998876653
No 206
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=39.90 E-value=11 Score=29.80 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=21.4
Q ss_pred CcCCCCCCcceeeccCCCceeecCCCcceeeec
Q 007763 294 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWL 326 (590)
Q Consensus 294 tK~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~ 326 (590)
..+|..|++.+... -+.|+ |+..||-.
T Consensus 25 ~~RC~~C~kkvgL~----~f~Cr--Cg~~FCs~ 51 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT----GFKCR--CGSTFCGT 51 (74)
T ss_dssp CCBCSSSCCBCTTT----CEECT--TSCEECTT
T ss_pred CccchhhcCccccc----ceEec--cCCEeccc
Confidence 36899999887754 27897 99999965
No 207
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.81 E-value=12 Score=30.15 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=22.6
Q ss_pred CCCCCCcceeeccCCCceeecCCCc--ceeeecccccccC
Q 007763 296 PCPRCKRPIEKNQGCMHMTCTPPCK--FEFCWLCLGQWSD 333 (590)
Q Consensus 296 ~CP~C~~~IEK~~GCnhMtC~~~C~--~~FCw~C~~~w~~ 333 (590)
.||.|+.++|+ |. .|| ..||--|++..+.
T Consensus 33 fCPeCgq~Le~--------lk-ACGA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LK-ACGAVDYFCQNGHGLISK 63 (81)
T ss_dssp ECSSSCSCCCE--------EE-ETTEEEECCTTTTCCCCT
T ss_pred cCcchhhHHHH--------HH-hcCCcCeeeccCCCEeec
Confidence 79999999995 66 576 5788888876543
No 208
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=38.43 E-value=15 Score=28.26 Aligned_cols=29 Identities=34% Similarity=0.800 Sum_probs=22.3
Q ss_pred CcccccccccccCCCCceecCC-CCccchhhHH
Q 007763 140 EEMTCGICFENYPSDRLLAAAC-GHPFCSSCWT 171 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~ 171 (590)
...-|.||.++- .+.-+.| |-.||..||.
T Consensus 7 e~pWC~ICneDA---tlrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 7 GLPWCCICNEDA---TLRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CCSSCTTTCSCC---CEEETTTTSEEECSSHHH
T ss_pred CCCeeEEeCCCC---eEEecCCCCceehHHHHH
Confidence 345799999872 3566789 7899999993
No 209
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.27 E-value=48 Score=25.06 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhc
Q 007763 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (590)
Q Consensus 81 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (590)
+.|.++.+ ++.+...|...|+..+||++...+-++.
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34556655 5899999999999999999988876654
No 210
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=37.22 E-value=12 Score=32.32 Aligned_cols=29 Identities=14% Similarity=0.467 Sum_probs=22.5
Q ss_pred CcCCCCCCcceee----ccCCCceeecCCCccee
Q 007763 294 SKPCPRCKRPIEK----NQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 294 tK~CP~C~~~IEK----~~GCnhMtC~~~C~~~F 323 (590)
.+-||.|+.++.- ..+-+.+.|+ .|++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~-~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECS-SSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECC-cCCCee
Confidence 3789999987762 2667889998 898866
No 211
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=36.43 E-value=13 Score=38.11 Aligned_cols=26 Identities=27% Similarity=0.777 Sum_probs=22.0
Q ss_pred cCCCc-cccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceee
Q 007763 251 RCSYS-FCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 306 (590)
Q Consensus 251 ~C~~~-fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK 306 (590)
.|||. ||..|...+ +.||-|+.+|.+
T Consensus 312 pCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred CCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 89999 999998532 689999999974
No 212
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=35.51 E-value=7.8 Score=33.40 Aligned_cols=37 Identities=19% Similarity=0.625 Sum_probs=0.0
Q ss_pred CCCCCCccee--eccCCCceeecCCCcceeeecccccccCC
Q 007763 296 PCPRCKRPIE--KNQGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 296 ~CP~C~~~IE--K~~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
+||.|..... ..+.|.-+.-. |+|.|+..|...|-..
T Consensus 61 ~c~~C~~~~~~~~~~~~~v~~~~--C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 61 LCIECQANQASATSEECTVAWGV--CNHAFHFHCISRWLKT 99 (117)
T ss_dssp -----------------------------------------
T ss_pred cChhhhcccccccccccccccCC--cCceEcHHHHHHHHHc
Confidence 4555544321 13445555554 9999999999999654
No 213
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=34.93 E-value=14 Score=29.55 Aligned_cols=41 Identities=20% Similarity=0.644 Sum_probs=26.5
Q ss_pred HHHHHhc-CcCCCCCCcceeeccCCCceeecCCCcceeeeccccc
Q 007763 287 MNWILAN-SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 330 (590)
Q Consensus 287 ~~wi~~n-tK~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~ 330 (590)
..|+... ...|+.|+...- -.--.-.|+ .||.-||..|...
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs--~~~RrHHCR-~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFS--ISRRKHHCR-NCGHIFCNTCSSN 52 (82)
T ss_dssp ----CCCCCCBCTTTCCBCB--TTBCCEECT-TTCCEECSGGGCE
T ss_pred CccccCccCCcccCcCCccc--CccccccCC-CCCCEEChHHhCC
Confidence 4566543 468999998764 112234688 8999999999864
No 214
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=34.13 E-value=21 Score=29.13 Aligned_cols=53 Identities=23% Similarity=0.639 Sum_probs=34.1
Q ss_pred CCceEeeecCCCcceeEe-cCCCccccccCCCcCCCCCchhHHHHHHhhhhhhhhHHHHHhcCcCCCCCCcceeeccCCC
Q 007763 233 CDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCM 311 (590)
Q Consensus 233 C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~w~~k~~~e~e~~~wi~~ntK~CP~C~~~IEK~~GCn 311 (590)
|+--|-.. ..+...|-| .|++..|..|. ++. +....+-||+|+.+..+..|+.
T Consensus 22 CGD~VG~~-~~Ge~FVAC~eC~FPvCrpCy----------EYE---------------rkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 22 CGDQIGLT-VEGDLFVACNECGFPACRPCY----------EYE---------------RREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SCCBCCBC-SSSSBCCSCSSSCCCCCHHHH----------HHH---------------HHTSCSSCTTTCCCCCCCTTCC
T ss_pred ccCccccC-CCCCEEEeeeccCChhhHHHH----------HHH---------------HhccCccccccCCccccccCCC
Confidence 55444443 335567789 89988887775 221 1122389999999988666654
No 215
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=32.79 E-value=29 Score=25.84 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=16.4
Q ss_pred cCCCCCCc-ceeeccCCCceeecCCCcc
Q 007763 295 KPCPRCKR-PIEKNQGCMHMTCTPPCKF 321 (590)
Q Consensus 295 K~CP~C~~-~IEK~~GCnhMtC~~~C~~ 321 (590)
..||.|+. .|..+..=.-+.|. .||.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~-~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICP-ECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECT-TTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeC-CCCC
Confidence 58999976 56544444447777 5643
No 216
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.44 E-value=10 Score=29.33 Aligned_cols=28 Identities=32% Similarity=0.807 Sum_probs=20.6
Q ss_pred CcCCCCCCcceeecc--CCCceeecCCCcceeeec
Q 007763 294 SKPCPRCKRPIEKNQ--GCMHMTCTPPCKFEFCWL 326 (590)
Q Consensus 294 tK~CP~C~~~IEK~~--GCnhMtC~~~C~~~FCw~ 326 (590)
..+|..|++.+-..+ | +.|+ |+..||-.
T Consensus 15 ~~rC~~C~kk~gL~~~eg---f~Cr--Cg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQEL---GSCR--CGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHHHHH---HCCS--SSCCCCTT
T ss_pred CCcchhhCCeecccccCc---eEec--CCCEehhc
Confidence 368999998887332 2 4697 99999965
No 217
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.38 E-value=2.9e+02 Score=24.89 Aligned_cols=24 Identities=25% Similarity=0.773 Sum_probs=17.1
Q ss_pred ccccCCCCccCC-CccccccccCCC
Q 007763 566 HWYCDQCTYANV-NSATACAMCQHS 589 (590)
Q Consensus 566 ~~~c~~c~~~~~-~~~~~c~~c~~~ 589 (590)
.|.|..|.|.-. --...|..|..|
T Consensus 138 ~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEESCCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 499999999532 222489999764
No 218
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=30.84 E-value=23 Score=28.80 Aligned_cols=32 Identities=28% Similarity=0.598 Sum_probs=24.6
Q ss_pred CcccCCCCCCCceEeeecCCCcceeEe-cCCCccccccCC
Q 007763 224 KTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTE 262 (590)
Q Consensus 224 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 262 (590)
....|+.++|.... ...+.| .|+..||..++.
T Consensus 24 ~~~~C~~~~Ck~~~-------~l~f~C~~C~~~FC~~HR~ 56 (86)
T 1wfe_A 24 KSYSCSFKGCTDVE-------LVAVICPYCEKNFCLRHRH 56 (86)
T ss_dssp CCEECCSTTCCCEE-------SSCEECTTTCCEECGGGCS
T ss_pred CCCCCCCcCCCCCC-------ccceECCCCCcccccccCC
Confidence 34579999998652 245799 799999999884
No 219
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=30.74 E-value=42 Score=31.01 Aligned_cols=30 Identities=0% Similarity=-0.261 Sum_probs=18.9
Q ss_pred CCcccCCCCCCCceEeeecCCCcceeEecCCCccccccC
Q 007763 223 RKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNCT 261 (590)
Q Consensus 223 ~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 261 (590)
+....||- |..++.- .|.-.||++||..|.
T Consensus 104 p~~f~CPI--~~elm~D-------PV~~~~Ghtfer~~I 133 (179)
T 2f42_A 104 PDYLCGKI--SFELMRE-------PCITPSGITYDRKDI 133 (179)
T ss_dssp CGGGBCTT--TCSBCSS-------EEECTTSCEEEHHHH
T ss_pred cHhhcccC--ccccCCC-------CeECCCCCEECHHHH
Confidence 34567885 6544321 233379999998876
No 220
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=30.17 E-value=24 Score=32.54 Aligned_cols=24 Identities=21% Similarity=0.593 Sum_probs=20.2
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKF 321 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~ 321 (590)
-.||+|+.++.+.+ ++|.|. .||.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp-~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCP-ECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECS-SSCC
T ss_pred ecccccCCceEECC--CEEECC-CCCC
Confidence 37999999998876 999998 6764
No 221
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.11 E-value=19 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.510 Sum_probs=17.7
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcce
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFE 322 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~ 322 (590)
-.|+.|+..++...+ ..+.|. .||+.
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp-~CG~R 54 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCK-DCGHR 54 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCS-SSCCC
T ss_pred EECCCCCCcceeCCC-CCccCC-CCCce
Confidence 379999998775433 457777 67653
No 222
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.09 E-value=15 Score=29.92 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=26.0
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.||-|..++. +.++-. .|||.||-.|...|-.
T Consensus 8 ~~CPI~~~~~~-----dPV~~~-~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNK-VCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CBCTTTCSBCS-----SEEEES-SSCCEEEHHHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcC-CCCCeecHHHHHHHHH
Confidence 46999998876 456663 4999999999998753
No 223
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.06 E-value=83 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcC
Q 007763 83 ITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (590)
Q Consensus 83 i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (590)
|.++.+ +|.+...|+..|+..+||++...+-.+.+
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 444443 58999999999999999999988876654
No 224
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.68 E-value=26 Score=30.41 Aligned_cols=40 Identities=20% Similarity=0.555 Sum_probs=27.8
Q ss_pred HHHHh-cCcCCCCCCcceeeccCCCceeecCCCcceeeeccccc
Q 007763 288 NWILA-NSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 330 (590)
Q Consensus 288 ~wi~~-ntK~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~ 330 (590)
.|+.. ....|+.|+.+.-- .--.-.|+ .||.-||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR-~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSV--TVRRHHCR-QCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCS--SSCCEECT-TTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCcccc--ccccccCC-CCCeEEChHHhCC
Confidence 35543 25689999997641 12235798 8999999999764
No 225
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.62 E-value=38 Score=27.49 Aligned_cols=34 Identities=35% Similarity=0.767 Sum_probs=23.9
Q ss_pred CCCCcccccccccccCCC--CceecCCCCccchhhH
Q 007763 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCW 170 (590)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~ 170 (590)
+......|.+|...|..- ...--.||+.||..|.
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs 51 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCC 51 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCccc
Confidence 334456799999877432 2233469999999998
No 226
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=29.47 E-value=15 Score=30.95 Aligned_cols=25 Identities=20% Similarity=0.666 Sum_probs=17.6
Q ss_pred cCCCceeecCCCcceeeecccccccCC
Q 007763 308 QGCMHMTCTPPCKFEFCWLCLGQWSDH 334 (590)
Q Consensus 308 ~GCnhMtC~~~C~~~FCw~C~~~w~~H 334 (590)
++|.-+.- +|+|.|+..|...|-..
T Consensus 64 ~~~~~~~~--~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 64 EECTVAWG--VCNHAFHFHCISRWLKT 88 (106)
T ss_dssp -CCCEEEE--TTSCEEEHHHHHHHHTT
T ss_pred ccceEeec--ccCcEECHHHHHHHHHc
Confidence 34444444 49999999999999643
No 227
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=29.40 E-value=25 Score=28.52 Aligned_cols=28 Identities=29% Similarity=0.725 Sum_probs=19.7
Q ss_pred cCCCCCCcc------eeeccCCCceeecCCCccee
Q 007763 295 KPCPRCKRP------IEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 295 K~CP~C~~~------IEK~~GCnhMtC~~~C~~~F 323 (590)
-.||.|+.. |.|..|=-++.|+ .|+..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~-~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCT-VCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEES-SSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcc-cCCCeE
Confidence 579988775 3345666778888 677766
No 228
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.13 E-value=1e+02 Score=22.93 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHhcCCChHHHHHHhhcC
Q 007763 77 QRQEEDITRISTVLSIS-KVAASILLRFYNWSVSKVHDEWFAD 118 (590)
Q Consensus 77 ~~~~~~i~~v~~il~i~-~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (590)
....+.|.++.+. +.+ ...+...|+..+||+++.++..+..
T Consensus 15 ~~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4455667777765 764 6677899999999999999887654
No 229
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.37 E-value=43 Score=24.53 Aligned_cols=37 Identities=5% Similarity=-0.018 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHhcCCChHHHHHHhhcC
Q 007763 81 EDITRISTVLSISKVA-ASILLRFYNWSVSKVHDEWFAD 118 (590)
Q Consensus 81 ~~i~~v~~il~i~~~~-a~~LL~~~~W~~~~l~e~~~~~ 118 (590)
+.|.++.+. +.+... +...|+..+||+++.++..|..
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 456666655 786554 5899999999999999887753
No 230
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=27.27 E-value=36 Score=29.68 Aligned_cols=30 Identities=27% Similarity=0.884 Sum_probs=20.2
Q ss_pred hcCcCCCCCCcceeeccCCCceeecCCCccee
Q 007763 292 ANSKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 292 ~ntK~CP~C~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
.+.-+||+|+...-=..|=. ..|. .|+++|
T Consensus 25 ~~lP~CP~C~seytYeDg~l-~vCP-eC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGAL-LVCP-ECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSS-EEET-TTTEEE
T ss_pred ccCCCCCCCCCcceEecCCe-EECC-cccccc
Confidence 34579999998766555533 6776 677665
No 231
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=26.76 E-value=23 Score=35.00 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=17.9
Q ss_pred cCCCCCCcceeec--cCCCceeecCCCc
Q 007763 295 KPCPRCKRPIEKN--QGCMHMTCTPPCK 320 (590)
Q Consensus 295 K~CP~C~~~IEK~--~GCnhMtC~~~C~ 320 (590)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP-VCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTS
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999964 554445554 454
No 232
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=26.53 E-value=27 Score=34.44 Aligned_cols=25 Identities=40% Similarity=1.039 Sum_probs=17.2
Q ss_pred cCCCCCCcceeec--cCCCceeecCCCc
Q 007763 295 KPCPRCKRPIEKN--QGCMHMTCTPPCK 320 (590)
Q Consensus 295 K~CP~C~~~IEK~--~GCnhMtC~~~C~ 320 (590)
++||.|+.+|++. +|=.--+|. .|+
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCP-TCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECT-TTT
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999964 554444454 443
No 233
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.40 E-value=1.1e+02 Score=24.49 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcC
Q 007763 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (590)
Q Consensus 80 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (590)
.+.|.++.+ ++++...|...|+..+|+++...+-++..
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 455667766 59999999999999999999998877654
No 234
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=26.05 E-value=1.5e+02 Score=22.39 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHh
Q 007763 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEW 115 (590)
Q Consensus 79 ~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~ 115 (590)
|...++....-++..|+-|+-||---+|++...+..|
T Consensus 17 mdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~ 53 (73)
T 2l2d_A 17 MDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY 53 (73)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhH
Confidence 5566777778899999999999999999999988776
No 235
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.02 E-value=28 Score=30.10 Aligned_cols=33 Identities=30% Similarity=0.736 Sum_probs=24.3
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeeccccc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 330 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~ 330 (590)
..|..|+...--. =-.-.|+ .||.-||..|...
T Consensus 20 ~~C~~C~~~Fs~~--~RkHHCR-~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 20 PSCKSCGAHFANT--ARKQTCL-DCKKNFCMTCSSQ 52 (120)
T ss_dssp CCCTTTCCCCSSG--GGCEECT-TTCCEECGGGEEC
T ss_pred CcccCcCCccccc--cccccCC-CCCCeeCHHHhCC
Confidence 6899998876411 1235688 8999999999764
No 236
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.02 E-value=98 Score=24.72 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhcC
Q 007763 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (590)
Q Consensus 82 ~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 118 (590)
.|.++.+ +|.+...|...|+..+||++...+-.+.+
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4555555 59999999999999999999988776654
No 237
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=25.82 E-value=24 Score=34.87 Aligned_cols=25 Identities=44% Similarity=0.986 Sum_probs=17.6
Q ss_pred cCCCCCCcceeec--cCCCceeecCCCc
Q 007763 295 KPCPRCKRPIEKN--QGCMHMTCTPPCK 320 (590)
Q Consensus 295 K~CP~C~~~IEK~--~GCnhMtC~~~C~ 320 (590)
++||.|+.+|+|. +|=.--+|. .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCP-RCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECC-CCC
Confidence 7999999999974 554445554 453
No 238
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=25.48 E-value=36 Score=30.56 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=21.8
Q ss_pred cccCCCCCCCceEeeecCCCcceeEe-cCCCccccc
Q 007763 225 TKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWN 259 (590)
Q Consensus 225 ~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 259 (590)
.+.||++.|+..+-.... .....| .|+..+++.
T Consensus 118 ~~~c~~~~cg~g~fma~h--~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANH--KDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEEEC--SSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEeccc--CCCcccCCCceEEEec
Confidence 478999999863322111 125689 999998864
No 239
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=25.30 E-value=26 Score=34.60 Aligned_cols=25 Identities=28% Similarity=0.757 Sum_probs=17.6
Q ss_pred cCCCCCCcceeec--cCCCceeecCCCc
Q 007763 295 KPCPRCKRPIEKN--QGCMHMTCTPPCK 320 (590)
Q Consensus 295 K~CP~C~~~IEK~--~GCnhMtC~~~C~ 320 (590)
++||.|+.+|++. +|=.--+|. .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCR-QCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999964 554444554 453
No 240
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.13 E-value=33 Score=27.76 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=23.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeeccccc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 330 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~ 330 (590)
..|+.|+...--. --.-.|+ .||.-||..|...
T Consensus 10 ~~C~~C~~~F~~~--~RrHHCR-~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLF--KKEYGCK-NCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSS--SCEEECS-SSCCEEETTTSCE
T ss_pred CCCcCcCCcccCc--cccccCC-CCCCEEChhHcCC
Confidence 6788998865411 1225688 8999999999764
No 241
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=25.01 E-value=26 Score=34.44 Aligned_cols=25 Identities=36% Similarity=0.781 Sum_probs=18.0
Q ss_pred cCCCCCCcceeec--cCCCceeecCCCc
Q 007763 295 KPCPRCKRPIEKN--QGCMHMTCTPPCK 320 (590)
Q Consensus 295 K~CP~C~~~IEK~--~GCnhMtC~~~C~ 320 (590)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCP-GCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECC-CCC
Confidence 7999999999964 554445565 454
No 242
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=24.60 E-value=1.6e+02 Score=20.62 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHhcCCChHHHHHHhhc
Q 007763 77 QRQEEDITRISTVLSIS-KVAASILLRFYNWSVSKVHDEWFA 117 (590)
Q Consensus 77 ~~~~~~i~~v~~il~i~-~~~a~~LL~~~~W~~~~l~e~~~~ 117 (590)
....+.|.++.+. |.+ ...+...|+..+||+++.++..+.
T Consensus 5 ~~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 5 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3445677777664 775 556688999999999999887664
No 243
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.29 E-value=42 Score=28.46 Aligned_cols=30 Identities=20% Similarity=0.487 Sum_probs=21.5
Q ss_pred cccCCCCCCCceEeeecC--CCcceeEe-cCCCcc
Q 007763 225 TKWCPAPGCDYAVDFVVG--SGNYDVTC-RCSYSF 256 (590)
Q Consensus 225 ~~~CP~p~C~~~i~~~~~--~~~~~v~C-~C~~~f 256 (590)
+.+|| .|+..+..... .+...+.| .|++.+
T Consensus 4 m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 57898 59998877643 23456789 888765
No 244
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.98 E-value=50 Score=24.37 Aligned_cols=27 Identities=30% Similarity=0.934 Sum_probs=18.6
Q ss_pred cCCCCCCcceeeccCCCceeecC-CCccee
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTP-PCKFEF 323 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~-~C~~~F 323 (590)
-.||.|+.+++-.. ..+.|.. .|+..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 58999999988665 5677751 255443
No 245
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.77 E-value=42 Score=31.84 Aligned_cols=33 Identities=24% Similarity=0.625 Sum_probs=24.6
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeeccccc
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 330 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~ 330 (590)
..|+.|+...- -.--.-.|+ .||.-||..|...
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr-~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCR-NCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECT-TTCCEECSTTSCE
T ss_pred CccCCCCCccC--CcccccccC-CcCCEEChHHhCC
Confidence 68999988764 112335788 8999999999764
No 246
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.64 E-value=91 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC-ChHHHHHHhhc
Q 007763 82 DITRISTVLSISKVAASILLRFYNW-SVSKVHDEWFA 117 (590)
Q Consensus 82 ~i~~v~~il~i~~~~a~~LL~~~~W-~~~~l~e~~~~ 117 (590)
.|.++.+ ++.+...|...|+..+| |++...+-.+.
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4555655 69999999999999999 99988876664
No 247
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.54 E-value=29 Score=34.18 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=26.5
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.||-|..++. ..++-. .|||.||-.|...|-.
T Consensus 182 l~CPIcl~~f~-----DPVts~-~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISR-KCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp SBCTTTSSBCS-----SEEEES-SSCCEEEHHHHHHHST
T ss_pred eECcCccCccc-----CCeeeC-CCCCcccHHHHHHHHH
Confidence 58999998886 567775 6999999999987643
No 248
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=23.13 E-value=58 Score=25.64 Aligned_cols=33 Identities=24% Similarity=0.606 Sum_probs=24.3
Q ss_pred ccCCCCCCCceEeeecCCCcceeEe-cCCCccccccCCC-cC
Q 007763 226 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNCTEE-AH 265 (590)
Q Consensus 226 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~-~H 265 (590)
..|..++|... ....+.| .|+..||..++.+ .|
T Consensus 15 ~~Cs~~~C~~~-------dflpf~C~~C~~~FC~~HR~~e~H 49 (75)
T 1wys_A 15 QHCQVQHCRQR-------DFLPFVCDGCSGIFCLEHRSKDSH 49 (75)
T ss_dssp CCCSCTTTCCC-------SCCCEECTTTCCEECSTTCSSGGG
T ss_pred CCcCcccCCCc-------cceeeECcccCcCcCcccCCcccc
Confidence 57887888744 3346799 7999999998743 44
No 249
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=22.80 E-value=44 Score=29.97 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=21.9
Q ss_pred cCCCC--CCcceeeccCCCceeecCCCcceeee
Q 007763 295 KPCPR--CKRPIEKNQGCMHMTCTPPCKFEFCW 325 (590)
Q Consensus 295 K~CP~--C~~~IEK~~GCnhMtC~~~C~~~FCw 325 (590)
+.||+ |+..+.-..-=+..+|. .|++-+++
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cg-kc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCG-KCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEES-SSSSCCEE
T ss_pred CcCCCccCCCceEecccCCCcccC-CCceEEEe
Confidence 78999 99876533333457898 79988775
No 250
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.61 E-value=39 Score=25.73 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=17.9
Q ss_pred cCCCCCCcceeeccCCCceeecCCCccee
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~F 323 (590)
-.|..|+..++-..+ ..+.|. .||+.+
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~-~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCR-ECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCS-SSCCCC
T ss_pred EECCCCCCeeecCCC-CceECC-CCCcEE
Confidence 478888887775543 457787 677654
No 251
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=22.54 E-value=41 Score=28.98 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=22.2
Q ss_pred CcccCCCCCCCceEeeecC--CCcceeEe-cCCCcc
Q 007763 224 KTKWCPAPGCDYAVDFVVG--SGNYDVTC-RCSYSF 256 (590)
Q Consensus 224 ~~~~CP~p~C~~~i~~~~~--~~~~~v~C-~C~~~f 256 (590)
.+.+|| .|+.++..... .....+.| .|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 357999 59998876643 34456789 898765
No 252
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.44 E-value=80 Score=25.07 Aligned_cols=34 Identities=24% Similarity=0.556 Sum_probs=24.3
Q ss_pred CCCCcccccccccccCCC--CceecCCCCccchhhH
Q 007763 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCW 170 (590)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~ 170 (590)
|......|.+|...|..- ...--.||+.||..|.
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 52 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCS 52 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGG
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHh
Confidence 445567899999887432 1223469999999998
No 253
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.66 E-value=5.6e+02 Score=24.88 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007763 453 FFEYLQGEAESGLERLHQCAEKELQIY 479 (590)
Q Consensus 453 ~fe~~Q~~le~~~E~L~~~le~~l~~~ 479 (590)
-++.+...++..++.|...|+..+++|
T Consensus 155 ~~e~L~~ql~~~a~~L~~~l~~~~eeL 181 (273)
T 3s84_A 155 QLEGLTFQMKKNAEELKARISASAEEL 181 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555554444333
No 254
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=21.65 E-value=40 Score=31.45 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=17.4
Q ss_pred cCCCCCCccee-eccCCCceeecCCCccee
Q 007763 295 KPCPRCKRPIE-KNQGCMHMTCTPPCKFEF 323 (590)
Q Consensus 295 K~CP~C~~~IE-K~~GCnhMtC~~~C~~~F 323 (590)
+.||+|+..+. ....+.| +|. .|++-|
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~-~CG-kC~~t~ 141 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRH-YCG-KCHLTL 141 (189)
T ss_dssp EECSTTCSSCEEEECSSCE-EET-TTCCCB
T ss_pred ccCCccCCCccccCccCCC-ccC-CceeEE
Confidence 78999997644 3444444 676 565555
No 255
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.55 E-value=40 Score=29.15 Aligned_cols=32 Identities=28% Similarity=0.693 Sum_probs=22.6
Q ss_pred CCcccccccccccCCC--CceecCCCCccchhhH
Q 007763 139 GEEMTCGICFENYPSD--RLLAAACGHPFCSSCW 170 (590)
Q Consensus 139 ~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~ 170 (590)
.....|.+|...|..- ...--.||+.||..|.
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs 100 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECS 100 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHh
Confidence 3445799999887432 1233469999999998
No 256
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=21.50 E-value=59 Score=26.79 Aligned_cols=48 Identities=23% Similarity=0.536 Sum_probs=32.6
Q ss_pred CcccccccccccCCCCceecCC-CCccchhhHHHhhcCCCceecccCCCCCCCccchhH
Q 007763 140 EEMTCGICFENYPSDRLLAAAC-GHPFCSSCWTAINDGPGCLMLRCPDPSCGAAVGQDM 197 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~C~~~i~~g~~~~~i~CP~~~C~~~i~~~~ 197 (590)
+.+.|-.|.-.. + -.+.| .|..|..|++.+-.. .=+|| -|+..++..+
T Consensus 27 G~~nCKsCWf~~--k--~LV~C~dHYLCl~CLtlmL~~----SdrCp--IC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFEN--K--GLVECNNHYLCLNCLTLLLSV----SNRCP--ICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCC--S--SEEECSSCEEEHHHHHHTCSS----SSEET--TTTEECCCCS
T ss_pred CcccChhhcccc--C--CeeeecchhhHHHHHHHHHhh----ccCCc--ccCCcCCcce
Confidence 467899998542 2 23344 699999999655432 24798 8998876543
No 257
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.31 E-value=39 Score=25.43 Aligned_cols=21 Identities=38% Similarity=0.902 Sum_probs=14.6
Q ss_pred CcCCCCCCcceeeccCCCceeecCCCc
Q 007763 294 SKPCPRCKRPIEKNQGCMHMTCTPPCK 320 (590)
Q Consensus 294 tK~CP~C~~~IEK~~GCnhMtC~~~C~ 320 (590)
.-.||+|+.+.. .|..|. .||
T Consensus 30 l~~c~~cGe~~~-----~H~vc~-~CG 50 (60)
T 3v2d_5 30 LVPCPECKAMKP-----PHTVCP-ECG 50 (60)
T ss_dssp CEECTTTCCEEC-----TTSCCT-TTC
T ss_pred eeECCCCCCeec-----ceEEcC-CCC
Confidence 467899888776 555665 565
No 258
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.91 E-value=44 Score=25.07 Aligned_cols=36 Identities=33% Similarity=0.743 Sum_probs=27.7
Q ss_pred cCCCCCCcceeeccCCCceeecCCCcceeeecccccccC
Q 007763 295 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 333 (590)
Q Consensus 295 K~CP~C~~~IEK~~GCnhMtC~~~C~~~FCw~C~~~w~~ 333 (590)
-.|+-|.+.=. .+||.|. |. .|+..||-.|++.+.-
T Consensus 10 ~~C~iC~KTKF-ADG~Gh~-C~-yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 10 PTCGICHKTKF-ADGCGHN-CS-YCQTKFCARCGGRVSL 45 (62)
T ss_dssp CCCSSSSCSCC-CSSCCEE-BT-TTCCEECTTSEEEEES
T ss_pred chhhhhcccee-ccCCCcc-cc-ccCCeeecccCCEeee
Confidence 57888876432 5788886 55 6999999999998764
No 259
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=20.89 E-value=4.8e+02 Score=28.50 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHHccccccc
Q 007763 450 KRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVD 522 (590)
Q Consensus 450 ~~~~fe~~Q~~le~~~E~L~~~le~~l~~~~~~~~~~~~~~~~~~~l~~lt~~~~~~~~~l~~~le~gl~~~~ 522 (590)
..+.++.+++..+..+..|.+.+|++.+.++... + ..+..++..-..+.+.=|++=.+.|.+.+.++.
T Consensus 513 ~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~---~--~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 513 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ---E--RTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888887766421 1 123344555455566667888888888888883
No 260
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.79 E-value=69 Score=30.94 Aligned_cols=36 Identities=25% Similarity=0.744 Sum_probs=0.0
Q ss_pred hHHHHHhcCcCCCCCCc-ceeeccCCCc---eeecCCCccee
Q 007763 286 NMNWILANSKPCPRCKR-PIEKNQGCMH---MTCTPPCKFEF 323 (590)
Q Consensus 286 ~~~wi~~ntK~CP~C~~-~IEK~~GCnh---MtC~~~C~~~F 323 (590)
+..|+..| --||+|+. +|.+-+.=.. ..|. .|+-+|
T Consensus 27 TE~Wv~~n-~yCPnCG~~~l~~f~nN~PVaDF~C~-~C~Eey 66 (257)
T 4esj_A 27 TEDWVYRQ-SYCPNCGNNPLNHFENNRPVADFYCN-HCSEEF 66 (257)
T ss_dssp HHHHHHHH-CCCTTTCCSSCEEC----CCCEEECT-TTCCEE
T ss_pred hHHHHHHC-CcCCCCCChhhhhccCCCcccccccC-Ccchhh
No 261
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=20.69 E-value=1.1e+02 Score=28.59 Aligned_cols=37 Identities=14% Similarity=0.338 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhc
Q 007763 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (590)
Q Consensus 80 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (590)
.+.|.++.+ .|++...|...|...+||++...+..+.
T Consensus 164 eekV~~l~~-MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCA-MGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 344444433 4899999999999999999999887764
No 262
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.58 E-value=43 Score=28.87 Aligned_cols=34 Identities=26% Similarity=0.708 Sum_probs=21.4
Q ss_pred CCCCcccccccccccCCC--CceecCCCCccchhhH
Q 007763 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCW 170 (590)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~ 170 (590)
|......|..|-..|..- ...--.||..||..|.
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs 50 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCS 50 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGE
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHh
Confidence 455566899998877431 2233469999999998
No 263
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=20.29 E-value=2.2e+02 Score=23.50 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=21.3
Q ss_pred CcccccccccccCCCCcee-cCCCCccchhhH
Q 007763 140 EEMTCGICFENYPSDRLLA-AACGHPFCSSCW 170 (590)
Q Consensus 140 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~C~ 170 (590)
....|.||.+.-...+++. -.|+..|...|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl 37 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCL 37 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTT
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHh
Confidence 4567999987643333344 358888888888
No 264
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.18 E-value=56 Score=25.87 Aligned_cols=33 Identities=30% Similarity=0.799 Sum_probs=23.1
Q ss_pred CCCcccccccccccCCC--CceecCCCCccchhhH
Q 007763 138 DGEEMTCGICFENYPSD--RLLAAACGHPFCSSCW 170 (590)
Q Consensus 138 ~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~C~ 170 (590)
......|.+|...|..- ...--.||..||..|.
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs 50 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCS 50 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGG
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHh
Confidence 44456799999887432 1223469999999998
No 265
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=20.05 E-value=1.3e+02 Score=29.30 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHhhc
Q 007763 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (590)
Q Consensus 81 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (590)
+.|.++.+ .+++...|...|...+|+++..++..+.
T Consensus 217 ~~v~~l~~-mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 217 KKIENLCA-AGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34444433 3899999999999999999999988764
Done!