BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007764
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/584 (80%), Positives = 536/584 (91%), Gaps = 3/584 (0%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
T I CEGEP++REDE L+EVGYDDVGG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPS 303
GILLYGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363
IIFIDE+D+IAPKREKTHGEVERRIVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRR
Sbjct: 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359
Query: 364 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAA 423
FGRFDRE+DIG+PD GRLE+L+IHTKNMKL+DDVDLE++A +THG+VGADLAALC+EAA
Sbjct: 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
Query: 424 LQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDI 483
LQ IR+KMD+IDLEDETIDAE++NS+AVT + F+ AL SNPSALRETVVEVP V WEDI
Sbjct: 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDI 479
Query: 484 GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 543
GGLE+VKRELQE VQYPVEHP+KF KFGM+PSKGVLFYGPPGCGKTLLAKAIANECQANF
Sbjct: 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539
Query: 544 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
IS+KGPELLTMWFGESEANVREIFDKARQ+APCVLFFDELDSIA
Sbjct: 540 ISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 583
Score = 208 bits (529), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 155/230 (67%), Gaps = 3/230 (1%)
Query: 196 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 255
RE + +V ++D+GG+ +++ELV+ P+ HP F G+ P KG+L YGPPG GK
Sbjct: 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524
Query: 256 TLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315
TL+A+A+ANE A F I GPE+++ GESE+N+R+ F++A + AP ++F DE+DSIA
Sbjct: 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584
Query: 316 KREKTHGEVER---RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREID 372
R G+ R+++Q+LT MDG+ ++ +V +IGATNRP+ IDPA+ R GR D+ I
Sbjct: 585 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 644
Query: 373 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEA 422
I +PDE R+ +L+ + + ++ DVDLE +AK T+G+ GADL +C A
Sbjct: 645 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/584 (80%), Positives = 536/584 (91%), Gaps = 3/584 (0%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
T I CEGEP++REDE L+EVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPS 303
GILLYGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363
IIFIDE+D+IAPKREKTHGEVERRIVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRR
Sbjct: 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359
Query: 364 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAA 423
FGRFDRE+DIG+PD GRLE+L+IHTKNMKL+DDVDLE++A +THG+VGADLAALC+EAA
Sbjct: 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
Query: 424 LQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDI 483
LQ IR+KMD+IDLEDETIDAE++NS+AVT + F+ AL SNPSALRETVVEVP V WEDI
Sbjct: 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDI 479
Query: 484 GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 543
GGLE+VKRELQE VQYPVEHP+KF KFGM+PSKGVLFYGPPGCGKTLLAKAIANECQANF
Sbjct: 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539
Query: 544 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
IS+KGPELLTMWFGESEANVREIFDKARQ+APCVLFFDELDSIA
Sbjct: 540 ISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 583
Score = 208 bits (529), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 155/230 (67%), Gaps = 3/230 (1%)
Query: 196 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 255
RE + +V ++D+GG+ +++ELV+ P+ HP F G+ P KG+L YGPPG GK
Sbjct: 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524
Query: 256 TLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315
TL+A+A+ANE A F I GPE+++ GESE+N+R+ F++A + AP ++F DE+DSIA
Sbjct: 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584
Query: 316 KREKTHGEVER---RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREID 372
R G+ R+++Q+LT MDG+ ++ +V +IGATNRP+ IDPA+ R GR D+ I
Sbjct: 585 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 644
Query: 373 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEA 422
I +PDE R+ +L+ + + ++ DVDLE +AK T+G+ GADL +C A
Sbjct: 645 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/482 (78%), Positives = 435/482 (90%), Gaps = 3/482 (0%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNAVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
T I CEGEP++REDE L+EVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPS 303
GILLYGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363
IIFIDE+D+IAPKREKTHGEVERRIVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRR
Sbjct: 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359
Query: 364 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAA 423
FGRFDRE+DIG+PD GRLE+L+IHTKNMKL+DDVDLE++A +THG+VGADLAALC+EAA
Sbjct: 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
Query: 424 LQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDI 483
LQ IR+KMD+IDLEDETIDAE++NS+AVT + F+ AL SNPSALRETVVEVP V WEDI
Sbjct: 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDI 479
Query: 484 GG 485
GG
Sbjct: 480 GG 481
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 79/110 (71%)
Query: 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 538 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/482 (77%), Positives = 435/482 (90%), Gaps = 3/482 (0%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLV GGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
T I CEGEP++REDE L+EVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPS 303
GILLYGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363
IIFIDE+D+IAPKREKTHGEVERRIVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRR
Sbjct: 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359
Query: 364 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAA 423
FGRFDRE+DIG+PD GRLE+L+IHTKNMKL+DDVDLE++A +THG+VGADLAALC+EAA
Sbjct: 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
Query: 424 LQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDI 483
LQ IR+KMD+IDLEDETIDAE++NS+AVT + F+ AL SNPSALRETVVEVP V WEDI
Sbjct: 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDI 479
Query: 484 GG 485
GG
Sbjct: 480 GG 481
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 79/110 (71%)
Query: 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 538 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/482 (77%), Positives = 435/482 (90%), Gaps = 3/482 (0%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRV LGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVGLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
T I CEGEP++REDE L+EVGYDD+GG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPS 303
GILLYGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363
IIFIDE+D+IAPKREKTHGEVERRIVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRR
Sbjct: 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359
Query: 364 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAA 423
FGRFDRE+DIG+PD GRLE+L+IHTKNMKL+DDVDLE++A +THG+VGADLAALC+EAA
Sbjct: 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
Query: 424 LQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDI 483
LQ IR+KMD+IDLEDETIDAE++NS+AVT + F+ AL SNPSALRETVVEVP V WEDI
Sbjct: 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDI 479
Query: 484 GG 485
GG
Sbjct: 480 GG 481
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 79/110 (71%)
Query: 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537
V ++DIGG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 538 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/457 (77%), Positives = 415/457 (90%), Gaps = 3/457 (0%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGEPVRREDENR-LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK 243
T I CEGEP++REDE L+EVGYDDVGG RKQ+AQI+E+VELPLRHP LFK+IGVKPP+
Sbjct: 180 TVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPR 239
Query: 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPS 303
GILLYGPPG+GKTLIARAVANETGAFFF INGPEIMSKLAGESESNLRKAFEEAEKNAP+
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363
IIFIDE+D+IAPKREKTHGEVERRIVSQLLTLMDGLK RAHVIV+ ATNRPNSIDPALRR
Sbjct: 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 359
Query: 364 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAA 423
FGRFDRE+DIG+PD GRLE+L+IHTKNMKL+DDVDLE++A +THG+VGADLAALC+EAA
Sbjct: 360 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 419
Query: 424 LQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTAL 460
LQ IR+KMD+IDLEDETIDAE++NS+AVT + F+ AL
Sbjct: 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL 456
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 79/110 (71%)
Query: 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537
V ++D+GG +++E V+ P+ HP F+ G+ P +G+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 538 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
E A F + GPE+++ GESE+N+R+ F++A ++AP ++F DELD+IA
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 313 bits (802), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 145/212 (68%), Positives = 179/212 (84%), Gaps = 3/212 (1%)
Query: 2 SNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDT 61
S+ A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT
Sbjct: 2 SHMASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDT 59
Query: 62 ILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHI 121
+L+KG KR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+
Sbjct: 60 VLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHV 119
Query: 122 LPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVV 181
LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEF V+ETDP YC+V
Sbjct: 120 LPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIV 179
Query: 182 APDTEIFCEGEPVRREDENR-LDEVGYDDVGG 212
APDT I CEGEP++REDE L+EVGYDD+GG
Sbjct: 180 APDTVIHCEGEPIKREDEEESLNEVGYDDIGG 211
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 305 bits (780), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 139/191 (72%), Positives = 168/191 (87%), Gaps = 1/191 (0%)
Query: 28 PNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKI 87
PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KI
Sbjct: 3 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 62
Query: 88 RMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEA 147
RMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EA
Sbjct: 63 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 122
Query: 148 YRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVG 206
YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE L+EVG
Sbjct: 123 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 182
Query: 207 YDDVGGVRKQM 217
YDDVGG RKQ+
Sbjct: 183 YDDVGGCRKQL 193
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 288 bits (736), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 132/188 (70%), Positives = 161/188 (85%), Gaps = 2/188 (1%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A +D+KG D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 1 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 58
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 59 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 118
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 119 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 178
Query: 185 TEIFCEGE 192
T I CEGE
Sbjct: 179 TVIHCEGE 186
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 132/188 (70%), Positives = 159/188 (84%), Gaps = 2/188 (1%)
Query: 5 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILI 64
A SD K D STAIL++K PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+
Sbjct: 2 ASGSDTKSD--DLSTAILKQKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLL 59
Query: 65 KGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPV 124
KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+
Sbjct: 60 KGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPI 119
Query: 125 DDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184
DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPD
Sbjct: 120 DDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 179
Query: 185 TEIFCEGE 192
T I CEGE
Sbjct: 180 TVIHCEGE 187
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 126/172 (73%), Positives = 153/172 (88%)
Query: 28 PNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKI 87
PNRL+VDEAIN+DNSVV L M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KI
Sbjct: 5 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 64
Query: 88 RMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEA 147
RMN+VVR+NLRVRLGDV+S+ C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EA
Sbjct: 65 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 124
Query: 148 YRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDE 199
YRP+RKGD+FLVRGGMR+VEFKV+ETDP YC+VAPDT I CEGEP++REDE
Sbjct: 125 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDE 176
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/237 (56%), Positives = 178/237 (75%), Gaps = 3/237 (1%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V Y+D+GG+ KQM +IRE+VELPL+HP+LF+ +G++PPKGILLYGPPG+GKTL+A+AVA
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK--THG 322
ET A F + G E++ K GE S ++ F+ A++ APSIIFIDEID+IA KR T G
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133
Query: 323 EVE-RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 381
+ E +R + QLL MDG +R V +IGATNRP+ +DPA+ R GRFDR I++ PDE GR
Sbjct: 134 DREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193
Query: 382 LEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
LE+L+IHT+ M L++DV+LE IAK T G VGA+L A+CTEA + IRE D + ++D
Sbjct: 194 LEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD 250
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 85/118 (72%)
Query: 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
V E PNV +EDIGGLE +E++E V+ P++HPE FEK G+ P KG+L YGPPG GKTLL
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 532 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
AKA+A E A FI V G EL+ + GE + V++IF A++ AP ++F DE+D+IA +
Sbjct: 68 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 112/121 (92%), Positives = 117/121 (96%)
Query: 467 ALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGC 526
ALRETVVEVP V WEDIGGLE+VKRELQE VQYPVEHP+KF KFGM+PSKGVLFYGPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 527 GKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
GKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVREIFDKARQ+APCVLFFDELDSI
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 120
Query: 587 A 587
A
Sbjct: 121 A 121
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 155/230 (67%), Gaps = 3/230 (1%)
Query: 196 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK 255
RE + +V ++D+GG+ +++ELV+ P+ HP F G+ P KG+L YGPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 256 TLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315
TL+A+A+ANE A F I GPE+++ GESE+N+R+ F++A + AP ++F DE+DSIA
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 316 KREKTHGEVER---RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREID 372
R G+ R+++Q+LT MDG+ ++ +V +IGATNRP+ IDPA+ R GR D+ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 182
Query: 373 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEA 422
I +PDE R+ +L+ + + ++ DVDLE +AK T+G+ GADL +C A
Sbjct: 183 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 162/236 (68%), Gaps = 5/236 (2%)
Query: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266
YD VGG+ KQ+ +I+E++ELP++HP+LF+S+G+ PKG++LYGPPG+GKTL+ARAVA+ T
Sbjct: 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206
Query: 267 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---- 322
F ++G E++ K GE +R+ F A ++APSIIF+DEIDSI R + G
Sbjct: 207 DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDS 266
Query: 323 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 382
EV+R ++ +LL +DG ++ ++ +I ATNR + +DPAL R GR DR+I+ P R
Sbjct: 267 EVQRTML-ELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARA 325
Query: 383 EVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
E+LRIH++ M L+ ++L ++A+ +G GAD+ +CTEA + +RE+ + ED
Sbjct: 326 EILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQED 381
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 79/117 (67%)
Query: 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
V +VP+ ++ +GGL +E++E ++ PV+HPE FE G++ KGV+ YGPPG GKTLL
Sbjct: 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198
Query: 532 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588
A+A+A+ FI V G EL+ + GE VRE+F AR+ AP ++F DE+DSI +
Sbjct: 199 ARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 255
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 3/235 (1%)
Query: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266
Y D+GG+ Q+ +I+E VELPL HP+L++ +G+KPPKG++LYG PG+GKTL+A+AVAN+T
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 267 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 326
A F I G E++ K G+ R+ F+ A +NAPSI+FIDEID+I KR ++ ER
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 327 ---RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
R + +LL +DG R V VI ATN+ ++DPAL R GR DR+I PD + +
Sbjct: 301 EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360
Query: 384 VLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
+L IHT M LS+DV+LE + GAD+ A+CTEA L +RE+ + ED
Sbjct: 361 ILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAED 415
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 80/114 (70%)
Query: 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 535
P ++ DIGGLE+ +E++E+V+ P+ HPE +E+ G+ P KGV+ YG PG GKTLLAKA+
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 536 ANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
AN+ A F+ + G EL+ + G+ R+IF A ++AP ++F DE+D+I T+
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK 290
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 161/238 (67%), Gaps = 3/238 (1%)
Query: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 263
E+ +D +GG+ +Q+ ++RE++ELPL++P++F+ +G+KPPKG+LLYGPPG+GKTL+A+AVA
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 264 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTH 321
GA F I+ K GES +R+ F A+++ P IIF+DE+D+I +R E T
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 322 GEVE-RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380
+ E +R + +LLT MDG + +I ATNRP+++DPAL R GR DR+++I +P+E G
Sbjct: 297 ADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
Query: 381 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
RLE+ +IHT +K + + D E K + G+ GAD+ TEA IR+ D I+ +D
Sbjct: 357 RLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDD 414
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 79/125 (63%)
Query: 463 SNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYG 522
++P T E + ++ IGGL REL+E ++ P+++PE F++ G+ P KGVL YG
Sbjct: 163 TDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYG 222
Query: 523 PPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 582
PPG GKTLLAKA+A ANFI ++ + GES +RE+F A++ PC++F DE
Sbjct: 223 PPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDE 282
Query: 583 LDSIA 587
+D+I
Sbjct: 283 VDAIG 287
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 204 bits (520), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 157/243 (64%), Gaps = 6/243 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V + DVGG + + +++E+VE L+ P F IG + PKGILL GPPG+GKTL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG-- 322
E FF I+G + + G + +R F +A+ +AP I+FIDEID++ R G
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 323 -EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 381
+ + ++QLL MDG S+ +IV+ ATNRP+ +DPAL R GRFD++I + PD +GR
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 382 LEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED--E 439
++L IHT+N L++DV+LE IAK T G+VGADL L EAAL RE D I ++D E
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 440 TID 442
ID
Sbjct: 252 AID 254
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537
V ++D+GG E EL+E V++ ++ P KF + G KG+L GPPG GKTLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 538 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
E F + G + + ++ G A VR++F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVG 121
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 152/238 (63%), Gaps = 3/238 (1%)
Query: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 263
+V Y DVGG + Q+ ++RE+VELPL P+ F ++G+ PPKGILLYGPPG+GKTL ARAVA
Sbjct: 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264
Query: 264 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR--EKTH 321
N T A F + G E++ K GE +R+ FE A IIF DEID++ R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 322 GEVE-RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380
G+ E +R + +L+T +DG R ++ V+ ATNRPN++DPAL R GR DR+++ +PD G
Sbjct: 325 GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384
Query: 381 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
R + RIH+K+M + + E I++ GA+L ++CTEA + IR + V +D
Sbjct: 385 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKD 442
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 80/124 (64%)
Query: 464 NPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 523
+PS TV E P+V + D+GG ++ +L+E V+ P+ PE+F G+ P KG+L YGP
Sbjct: 192 DPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGP 251
Query: 524 PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 583
PG GKTL A+A+AN A FI V G EL+ + GE VRE+F+ AR C++FFDE+
Sbjct: 252 PGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEI 311
Query: 584 DSIA 587
D++
Sbjct: 312 DAVG 315
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 157/244 (64%), Gaps = 8/244 (3%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V + DVGG + + +++E+VE L+ P F IG + PKGILL GPPG+G TL+ARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---- 320
E FF I+G + + G + +R F +A+ +AP I+FIDEID++ R
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 321 HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380
H E E+ + +QLL MDG S+ +IV+ ATNRP+ +DPAL R GRFD++I + PD +G
Sbjct: 132 HDEREQTL-NQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 381 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED-- 438
R ++L IHT+N L++DV+LE IAK T G+VGADL L EAAL RE D I ++D
Sbjct: 191 RKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFE 250
Query: 439 ETID 442
E ID
Sbjct: 251 EAID 254
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537
V ++D+GG E EL+E V++ ++ P KF + G KG+L GPPG G TLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 538 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
E F + G + + ++ G A VR++F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVG 121
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 150/232 (64%), Gaps = 5/232 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V + D+G + ++ + P+R+P FK++G+ P G+LL GPPG GKTL+A+AVAN
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
E+G F + GPE+++ GESE +R+ F+ A+ +AP +IF DE+D++ P+R
Sbjct: 67 ESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126
Query: 325 ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEV 384
R+V+QLLT MDGL++R V ++ ATNRP+ IDPA+ R GR D+ + +G+P RL +
Sbjct: 127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186
Query: 385 LRIHTKNMK---LSDDVDLERIAKDTH--GYVGADLAALCTEAALQCIREKM 431
L+ TKN L DV+LE IA D Y GADL+AL EA++ +R++M
Sbjct: 187 LKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 86/114 (75%)
Query: 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLA 532
+ VPNV W DIG LE+++ EL + PV +P++F+ G+ GVL GPPGCGKTLLA
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61
Query: 533 KAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
KA+ANE NFISVKGPELL M+ GESE VR++F +A+ SAPCV+FFDE+D++
Sbjct: 62 KAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL 115
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 146/235 (62%), Gaps = 3/235 (1%)
Query: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266
Y DVGG+ KQ+ ++ E + LP++ FK +G++ PKG L+YGPPG+GKTL+ARA A +T
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 267 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR---EKTHGE 323
A F + P+++ GE +R AF A++ AP+IIFIDE+D+I KR EK+
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 324 VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
+R + +LL +DG S V V+ ATNR + +DPAL R GR DR+I+ +P E R +
Sbjct: 300 EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQ 359
Query: 384 VLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
+L+IH++ M DD++ + +A+ T + GA L A+ EA + +R + ED
Sbjct: 360 ILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHED 414
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 73/118 (61%)
Query: 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
V E P + D+GGL+ EL E + P++ +KF+ G+ KG L YGPPG GKTLL
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLL 231
Query: 532 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
A+A A + A F+ + P+L+ M+ GE VR+ F A++ AP ++F DELD+I T+
Sbjct: 232 ARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK 289
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 147/233 (63%), Gaps = 4/233 (1%)
Query: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266
+ DV G + ++ ELVE LR P F+ +G K PKG+L+ GPPG+GKTL+A+A+A E
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 267 GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---E 323
FF I+G + + G S +R FE+A+K AP IIFIDEID++ +R G +
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 324 VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
+ ++Q+L MDG + +IVI ATNRP+ +DPAL R GRFDR++ +G+PD GR +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 384 VLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436
+L++H + + L+ D+D IA+ T G+ GADLA L EAAL R V+ +
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
+ D+ G + K E+ E V+Y + P +F+K G KGVL GPPG GKTLLAKAIA E
Sbjct: 10 TFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 539 CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
+ F ++ G + + M+ G + VR++F++A+++APC++F DE+D++ Q
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 191 bits (486), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 147/229 (64%), Gaps = 6/229 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V + D+ G + ++ E+V+ L++P+ + ++G K PKG+LL GPPG+GKTL+A+AVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK---TH 321
E FF + G + G S +R FE A+K APSIIFIDEID+I R
Sbjct: 67 EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS 126
Query: 322 GEVER-RIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEV 379
G ER + ++QLL MDG S A VIV+ ATNRP +DPAL R GRFDR++ + PD
Sbjct: 127 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186
Query: 380 GRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIR 428
GR+E+L++H K +KL++DV+L+ +AK T G GADLA + EAAL R
Sbjct: 187 GRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Query: 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 533
E PNV ++D+ G E K E+ E V + +++PE++ G KGVL GPPG GKTLLAK
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 534 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
A+A E F S+ G + M+ G + VR++F+ A++ AP ++F DE+D+I
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIG 116
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 148/247 (59%), Gaps = 7/247 (2%)
Query: 199 ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLI 258
EN +V Y DVGG+ Q +IRE VELPL L++ IG+ PP+G+LLYGPPG+GKT++
Sbjct: 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTML 222
Query: 259 ARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 318
+AVAN T A F +NG E + K GE +R F A +NAPSIIFIDE+DSIA KR
Sbjct: 223 VKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRF 282
Query: 319 KTHGEVER---RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI-G 374
+R RI+ +LLT MDG +V VI ATNR +++DPAL R GR DR+I+
Sbjct: 283 DAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342
Query: 375 VPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVI 434
+ D R + M L+ + DL+ + GA +AA+ EA L+ +R+ VI
Sbjct: 343 LRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVI 402
Query: 435 ---DLED 438
DLE+
Sbjct: 403 LQSDLEE 409
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 98/158 (62%), Gaps = 10/158 (6%)
Query: 440 TIDAEILN-SMAVTDEHFKTAL-------GTSNPSALRETVVEVPNVNWEDIGGLENVKR 491
T+D E+L SM+V AL S+ S + E E P+V + D+GGL+ K+
Sbjct: 125 TLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGEN--EKPDVTYADVGGLDMQKQ 182
Query: 492 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551
E++E V+ P+ + +E+ G+ P +GVL YGPPG GKT+L KA+AN +A FI V G E
Sbjct: 183 EIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242
Query: 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
+ + GE VR++F AR++AP ++F DE+DSIAT+
Sbjct: 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATK 280
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 136/231 (58%), Gaps = 7/231 (3%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V + DV G+ + ++RE V+ L+ P+ F +G K PKG LL GPPG GKTL+A+AVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
E F + G E + + G + +R F+EA AP I++IDEID++ KR T
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 325 ----ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380
E + ++QLL MDG+ + HVIV+ +TNR + +D AL R GR DR + I +P
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 381 RLEVLRIHTKNMKLSDDVDL--ERIAKDTHGYVGADLAALCTEAALQCIRE 429
R E+ H K++KL+ +R+A+ T G+ GAD+A +C EAAL RE
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Query: 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA 536
V+++D+ G+ K E++E V Y ++ PE+F + G KG L GPPGCGKTLLAKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 537 NECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
E Q F+++ G E + + G A VR +F +AR APC+++ DE+D++ +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 113
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 263
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 27 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 85
Query: 264 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG- 322
E F +G + + G + +R FE A+++AP I+FIDEID++ KR G
Sbjct: 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 145
Query: 323 --EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380
+ + ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 146 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205
Query: 381 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
R ++LRIH + L++DVDL +AK T G+VGADL L EAAL RE I ++D
Sbjct: 206 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 263
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
+ E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT L
Sbjct: 22 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 80
Query: 532 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
A+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 81 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 138
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 263
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94
Query: 264 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG- 322
E F +G + + G + +R FE A+++AP I+FIDEID++ KR G
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 323 --EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380
+ + ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 381 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
R ++LRIH + L++DVDL +AK T G+VGADL L EAAL RE I ++D
Sbjct: 215 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
+ E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT L
Sbjct: 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89
Query: 532 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
A+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 90 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 148/238 (62%), Gaps = 4/238 (1%)
Query: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 263
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 94
Query: 264 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--H 321
E F +G + + G + +R FE A+++AP I+FIDEID++ KR
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 154
Query: 322 GEVER-RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380
G ER + ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 155 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
Query: 381 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
R ++LRIH + L++DVDL +AK T G+VGADL L EAAL RE I ++D
Sbjct: 215 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 272
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
+ E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG GKT L
Sbjct: 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89
Query: 532 AKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
A+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++ +
Sbjct: 90 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 147/238 (61%), Gaps = 4/238 (1%)
Query: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 263
+V + DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT +ARAVA
Sbjct: 12 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 70
Query: 264 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG- 322
E F +G + + G + +R FE A+++AP I+FIDEID++ KR G
Sbjct: 71 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 130
Query: 323 --EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380
+ + ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFDR+I I PD G
Sbjct: 131 GNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190
Query: 381 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
R ++LRIH + L++DVDL +AK T G+VGADL L EAAL RE I ++D
Sbjct: 191 REQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 248
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 468 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 527
L + E P V ++D+ G E K EL+E V++ +++P +F + G KGVL GPPG G
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVG 61
Query: 528 KTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587
KT LA+A+A E + FI+ G + + M+ G A VR++F+ A++ APC++F DE+D++
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 588 TQ 589
+
Sbjct: 122 RK 123
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 171/332 (51%), Gaps = 21/332 (6%)
Query: 143 YFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEP-----VRRE 197
YF P+ K D GGM+ + T+P P E EP + E
Sbjct: 19 YFQSMVPPIPKQDGGEQNGGMQCKPYGAGPTEP-----AHPVDERLKNLEPKMIELIMNE 73
Query: 198 DENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTL 257
+ V ++D+ GV A I+E+V P+ P +F + PPKGILL+GPPG+GKTL
Sbjct: 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTL 132
Query: 258 IARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317
I + +A+++GA FF I+ + SK GE E +R F A P++IFIDEIDS+ +R
Sbjct: 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR 192
Query: 318 EKTHGEVERRIVSQLLTLMDG--LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 375
E RRI ++ L +DG S ++V+GATNRP ID A RR R + + I +
Sbjct: 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPL 250
Query: 376 PDEVGRLE-VLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVI 434
P+ R + V+ + +K + ++E+I + + + GAD+ LC EA+L IR +
Sbjct: 251 PEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR-SLQTA 309
Query: 435 DLEDETIDAEILNSMAVTDEHFKTALGTSNPS 466
D+ TI + + +A D F+ A T PS
Sbjct: 310 DI--ATITPDQVRPIAYID--FENAFRTVRPS 337
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 535
P VNWEDI G+E K ++E V +P+ P+ F P KG+L +GPPG GKTL+ K I
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCI 137
Query: 536 ANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
A++ A F S+ L + W GE E VR +F AR P V+F DE+DS+ +Q
Sbjct: 138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ 191
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 165 bits (417), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 82
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
E + FF ++ +++SK GESE +++ F A +N PSIIFIDE+D++ R + E
Sbjct: 83 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEA 142
Query: 325 ERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 143 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 200
Query: 384 VLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
+ I+ + + D + T GY G+D+A + +A +Q IR+ +D
Sbjct: 201 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 256
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 469 RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGK 528
R ++ E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGK 73
Query: 529 TLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
+ LAKA+A E + F SV +L++ W GESE V+++F AR++ P ++F DE+D++
Sbjct: 74 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL 131
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 106
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 107 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 166
Query: 325 ERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 167 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 224
Query: 384 VLRIHTKNM-KLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
+ I+ + + D + T GY G+D+A + +A +Q IR+ +D
Sbjct: 225 MFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 280
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 533
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 102
Query: 534 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 103 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 155
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 73
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 74 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 133
Query: 325 ERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 134 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 191
Query: 384 VLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
+ I+ + + D + T GY G+D+A + +A +Q IR+ +D
Sbjct: 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 533
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 69
Query: 534 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 122
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 140/236 (59%), Gaps = 5/236 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V ++DV G+ ++E V LP++ P LFK KP GILLYGPPG+GK+ +A+AVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT 91
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
E + FF ++ +++SK GESE +++ F A +N PSIIFID++D++ R + E
Sbjct: 92 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 151
Query: 325 ERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
RRI ++LL M+G+ + + V+V+GATN P +D A+RR RF+R I I +PD R
Sbjct: 152 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTT 209
Query: 384 VLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438
+ I+ + + D + T GY G+D+A + +A +Q IR+ +D
Sbjct: 210 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 265
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 533
E PNV WED+ GLE K L+E V PV+ P F K P+ G+L YGPPG GK+ LAK
Sbjct: 29 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 87
Query: 534 AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
A+A E + F SV +L++ W GESE V+++F AR++ P ++F D++D++
Sbjct: 88 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDAL 140
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 137/228 (60%), Gaps = 6/228 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V + DV G+ ++E V LP++ P LF P +GILL+GPPG+GK+ +A+AVA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLAKAVAT 189
Query: 265 E-TGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE 323
E + FF I+ +++SK GESE ++ F+ A +N PSIIFIDEIDS+ R + E
Sbjct: 190 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 249
Query: 324 VERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 382
RRI ++ L M G+ ++V+GATN P +D A+RR RF++ I I +P+ R
Sbjct: 250 AARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARA 307
Query: 383 EVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429
+ R+H + + S + D + + + T GY GAD++ + +A +Q +R+
Sbjct: 308 AMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Query: 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
V+E PNV W D+ GLE K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 183
Query: 532 AKAIANECQ-ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 239
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 160/303 (52%), Gaps = 9/303 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V + DV G+ ++E V LP++ P LF P +GILL+GPPG+GK+ +A+AVA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVAT 67
Query: 265 ETG-AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE 323
E + FF I+ +++SK GESE ++ F+ A +N PSIIFIDEIDS+ R + E
Sbjct: 68 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 127
Query: 324 VERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 382
RRI ++ L M G+ ++V+GATN P +D A+RR RF++ I I +P+ R
Sbjct: 128 AARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARA 185
Query: 383 EVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETI 441
+ ++H + S + D + + T GY GAD++ + +A +Q +R+ +
Sbjct: 186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRG 245
Query: 442 DAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVN-WEDIGGLENVKRELQETVQYP 500
+ + V D T +P A+ T ++VP E + + ++ R L T
Sbjct: 246 PSRADPNHLVDD--LLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTV 303
Query: 501 VEH 503
EH
Sbjct: 304 NEH 306
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Query: 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
V+E PNV W D+ GLE K L+E V P++ P F +P +G+L +GPPG GK+ L
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 61
Query: 532 AKAIANECQ-ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
AKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+DS+
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL 117
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 147/262 (56%), Gaps = 14/262 (5%)
Query: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVA 263
+V + D+ G ++E+V LP P+LF + P KG+LL+GPPG+GKTL+ARAVA
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVA 75
Query: 264 NETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE 323
E A F I+ + SK G+ E +R F A PSIIFIDE+DS+ +R + E
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135
Query: 324 VERRIVSQLLTLMDGLKSRA---HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380
RR+ ++ L DGL ++V+ ATNRP +D A R RF + + + +PDE
Sbjct: 136 ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQT 193
Query: 381 RLEVL-RIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 439
R +L R+ K D L R+AK T GY G+DL AL +AAL+ IRE L E
Sbjct: 194 RELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE------LNVE 247
Query: 440 TIDAEILNSM-AVTDEHFKTAL 460
+ +++M A+T++ F ++L
Sbjct: 248 QVKCLDISAMRAITEQDFHSSL 269
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA 536
V W DI G + K+ LQE V P PE F +P+KG+L +GPPG GKTLLA+A+A
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVA 75
Query: 537 NECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELD 584
EC A F+++ L + + G+ E VR +F AR P ++F DE+D
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVD 123
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 137/228 (60%), Gaps = 6/228 (2%)
Query: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
V +DD+ G ++E+V LP P+LF + P +G+LL+GPPG+GKT++A+AVA
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAA 170
Query: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
E+ A FF I+ + SK GE E +R F A + PSIIFID++DS+ +R + +
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 325 ERRIVSQLLTLMDGLKSRA--HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 382
RR+ ++ L DG++S V+V+GATNRP +D A+ R RF + + + +P+E RL
Sbjct: 231 SRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288
Query: 383 EVLRIHT-KNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429
+L+ K +L ++A+ T GY G+DL AL +AAL IRE
Sbjct: 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537
V ++DI G + K+ LQE V P PE F +P++G+L +GPPG GKT+LAKA+A
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAA 170
Query: 538 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586
E A F ++ L + + GE E VR +F AR+ P ++F D++DS+
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSL 219
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK 299
+P + +LL+GPPG GKT +A +A+E G +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 300 NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA------HVIVIGATNR 353
I+FIDEI ++ + E+ V ++ + G +R +IGAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 354 PNSID-PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 409
P I P L RFG + ++ P+E+ + + ++++++ LE I + + G
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 573
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 574 APCVLFFDELDSIATQ 589
+LF DE+ ++ Q
Sbjct: 91 G-DILFIDEIHRLSRQ 105
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK 299
+P + +LL+GPPG GKT +A +A+E G +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDLAAILANSLEEGD- 92
Query: 300 NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA------HVIVIGATNR 353
I+FIDEI ++ + E+ V ++ + G +R +IGAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 354 PNSID-PALRRFG 365
P I P L RFG
Sbjct: 148 PGLITAPLLSRFG 160
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 573
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 574 APCVLFFDELDSIATQ 589
+LF DE+ ++ Q
Sbjct: 91 GD-ILFIDEIHRLSRQ 105
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK 299
+P + +LL+GPPG GKT +A +A+E G +GP I G+ + L + EE +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 300 NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA------HVIVIGATNR 353
I+FIDEI ++ + E+ V ++ + G +R +IGAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 354 PNSID-PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 409
P I P L RFG + ++ P+E+ + + ++++++ LE I + + G
Sbjct: 148 PGLITAPLLSRFGIVE-HLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 573
P + +L +GPPG GKT LA IA+E N GP + E ++ I + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 574 APCVLFFDELDSIATQ 589
+LF DE+ ++ Q
Sbjct: 91 G-DILFIDEIHRLSRQ 105
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 376 PDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID 435
P+E RL++L+IH++ M L+ ++L +IA+ G GA++ +CTEA + +RE+ +
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 436 LED 438
ED
Sbjct: 71 QED 73
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 221 RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI-- 278
R ++ PLRH PK IL+ GP G GKT IAR +A A F + +
Sbjct: 37 RMQLQEPLRHEV--------TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
Query: 279 MSKLAGESESNLRK-------AFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331
+ + E +S +R A + E+N I+FIDEID I K E + +V R V +
Sbjct: 89 VGYVGKEVDSIIRDLTDSAGGAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQR 146
Query: 332 -LLTLMD--------GLKSRAHVIVIGA----TNRPNSIDPALR 362
LL L++ G+ H++ I + RP+ + P L+
Sbjct: 147 DLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQ 190
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 485 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544
L N R +Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRMQ--LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFI 79
Query: 545 SVKGPELLTMWF--GESEANVREIFDKARQSAPCV-----LFFDELDSI 586
V+ + + + E ++ +R++ D A + V +F DE+D I
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 376 PDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID 435
P+E RL++L+IH++ L+ ++L +IA+ G GA++ +CTEA +RE+ +
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVHVT 62
Query: 436 LED 438
ED
Sbjct: 63 QED 65
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 375 VPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVI 434
+PD GR + RIH+K+M + + E I++ GA+L ++CTEA + IR + V
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 435 DLED 438
+D
Sbjct: 67 TEKD 70
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 226 LPLRHPQLFKSIGVKPP-KGILLYGP-PGSGKTLIARAVANETGAFFFCINGPEIMSKLA 283
LP + FKSI K I+L+ P PG+GKT +A+A+ ++ A +NG +
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
Query: 284 GESESNLRKA--FEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341
+N A F+ +K +I IDE D + H L + M+ S
Sbjct: 90 RGPLTNFASAASFDGRQK----VIVIDEFDRSGLAESQRH----------LRSFMEAYSS 135
Query: 342 RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLR 386
+I+ N+ID ++ R I G P + ++E+++
Sbjct: 136 NCSIIITA-----NNIDGIIKPLQSRCRVITFGQPTDEDKIEMMK 175
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 508 EKFGMSPSKG----VLFYGP-PGCGKTLLAKAIANECQANFISVKGPE 550
E F SKG ++ + P PG GKT +AKA+ ++ A+ + V G +
Sbjct: 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESES----NLRKAFEE 296
P +LL GPP SGKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 118
Query: 297 AEKNAPSIIFIDEIDSI 313
A K+ S + +D+I+ +
Sbjct: 119 AYKSQLSCVVVDDIERL 135
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE--ANVREIFDKA 570
+P VL GPP GKT LA IA E FI + P+ + + F E+ +++IFD A
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 119
Query: 571 RQSAPCVLFFDELDSIATQV 590
+S + D+++ + V
Sbjct: 120 YKSQLSCVVVDDIERLLDYV 139
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESES----NLRKAFEE 296
P +LL GPP SGKT +A +A E+ F I P+ K+ G SE+ ++K F++
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119
Query: 297 AEKNAPSIIFIDEIDSI 313
A K+ S + +D+I+ +
Sbjct: 120 AYKSQLSCVVVDDIERL 136
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE--ANVREIFDKA 570
+P VL GPP GKT LA IA E FI + P+ + + F E+ +++IFD A
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 120
Query: 571 RQSAPCVLFFDELDSIATQV 590
+S + D+++ + V
Sbjct: 121 YKSQLSCVVVDDIERLLDYV 140
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
+ ++ G ENVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 539 CQANFISVKGPELL 552
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 305 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 352
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 353 RPNSIDPALR-RFG 365
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
+ ++ G ENVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 539 CQANFISVKGPELL 552
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 305 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 352
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATV 158
Query: 353 RPNSIDPALR-RFG 365
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 485 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544
G ENVK++L ++ E + VL GPPG GKT LA IA+E Q N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNIH 80
Query: 545 SVKGPELL 552
GP L+
Sbjct: 81 VTSGPVLV 88
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 305 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 352
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 353 RPNSIDPALR-RFG 365
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
+ ++ G ENVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 539 CQANFISVKGPELL 552
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 305 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 352
+FIDEI + + VE + S + + +M G A I ++G+T
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTT 158
Query: 353 RPNSIDPALR-RFG 365
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
+ ++ G ENVK++L ++ E + VL GPPG GKT LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASE 74
Query: 539 CQANFISVKGPELL 552
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 30/178 (16%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304
+LL GPPG GKT +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 305 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 352
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 353 RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409
R + LR E+D E+ E+++ M + +D E IAK + G
Sbjct: 159 RSGLLSSPLRSAFGIILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
+ ++ G ENVK++L ++ E + VL GPPG G+T LA IA+E
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGRTTLAHIIASE 74
Query: 539 CQANFISVKGPELL 552
Q N GP L+
Sbjct: 75 LQTNIHVTSGPVLV 88
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304
+LL GPPG G+T +A +A+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 305 IFIDEIDSIAPKREKTHGEVERRIVSQL----LTLMDGLKSRAHVI--------VIGATN 352
+FIDEI + + VE + S + + +M G A I ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 353 RPNSIDPALR-RFG 365
R + LR RFG
Sbjct: 159 RSGLLSSPLRSRFG 172
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 20/83 (24%)
Query: 245 ILLYGPPGSGKTLIARAVANE-------------TGAFFFCINGPEIMSKLAGESESNLR 291
ILL GP GSGKTL+A+ +A T A + + I+++L S+ N++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 292 KAFEEAEKNAPSIIFIDEIDSIA 314
KA I+FIDEID I+
Sbjct: 135 KA-------QKGIVFIDEIDKIS 150
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 518 VLFYGPPGCGKTLLAKAIANE-------------CQANFISVKGPELLTMWFGESEANVR 564
+L GP G GKTL+A+ +A +A ++ +LT S+ NV+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 565 EIFDKARQSAPCVLFFDELDSIA 587
KA++ ++F DE+D I+
Sbjct: 135 ----KAQKG---IVFIDEIDKIS 150
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 519 LFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----------TMWFGESEANVREIF 567
+ G PG GKT +A+ +A + N + PE+L T + GE E ++++
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 568 DKARQSAPCVLFFD 581
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 246 LLYGPPGSGKTLIARAVANETGAFFFCING--PEIM-----------SKLAGESESNLRK 292
+L G PG GKT IA +A + IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 293 AFEEAEKNAPSIIFID 308
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 519 LFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----------TMWFGESEANVREIF 567
+ G PG GKT +A+ +A + N + PE+L T + GE E ++++
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 568 DKARQSAPCVLFFD 581
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 19/76 (25%)
Query: 246 LLYGPPGSGKTLIARAVANETGAFFFCING--PEIM-----------SKLAGESESNLRK 292
+L G PG GKT IA +A + IN PEI+ +K GE E L+K
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258
Query: 293 AFEEAEKNAPSIIFID 308
+E + I+FID
Sbjct: 259 VMDEIRQAGNIILFID 274
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 157/405 (38%), Gaps = 75/405 (18%)
Query: 216 QMAQIRELVELPLRHPQLFKSIGV---KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 272
Q+A++ + L R +L ++I V + LL G G GKT IA +A +
Sbjct: 178 QLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA------WRI 231
Query: 273 ING--PEIM----------------SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIA 314
+ G PE+M +K G+ E + ++ E++ SI+FIDEI +I
Sbjct: 232 VQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTII 291
Query: 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP--NSIDPALRRFGRFDREID 372
+ G+V+ L+ L S + VIG+T ++I R R ++ID
Sbjct: 292 GAGAASGGQVD------AANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKID 345
Query: 373 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM- 431
I P +++ I+ K D+ AK V E A++ I ++
Sbjct: 346 ITEPSIEETVQI--INGLKPKYEAHHDVRYTAKAVRAAV---------ELAVKYINDRHL 394
Query: 432 --DVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVP--NVNWEDIGGLE 487
ID+ DE L M V+ K + ++ ++ + +P +V+ D L+
Sbjct: 395 PDKAIDVIDEAGARARL--MPVSKR--KKTVNVADIESVVARIARIPEKSVSQSDRDTLK 450
Query: 488 NVKREL------QETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIAN 537
N+ L Q+ + K + G+ P LF GP G GKT
Sbjct: 451 NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKT-------- 502
Query: 538 ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 582
E G ELL F SE R + + P + FD+
Sbjct: 503 EVTVQLSKALGIELLR--FDMSEYMERHTVSRLIGAPPGYVGFDQ 545
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 243 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKAF 294
+ +LL GPPG+GKT +A A+A E G+ FC + G E+ S ++E N R+A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 120
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 516 KGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESE 560
+ VL GPPG GKT LA AIA E + F + G E+ + ++E
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 243 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEIMSKLAGESE---SNLRKAFEEA 297
+ +LL GPPG+GKT +A A+A E G+ FC G E+ S ++E N R+A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 298 EKNAPSIIFID 308
K P I D
Sbjct: 138 IKEGPPGIIQD 148
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 516 KGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANVREIFDKA 570
+ VL GPPG GKT LA AIA E + F G E+ + ++E + E F +A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEV-LXENFRRA 133
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGESESN-----LRKAFEEAE 298
ILL GP GSGKTL+A +A F + + + GE N L+K + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 299 KNAPSIIFIDEIDSIAPKRE 318
K I++ID+ID I+ K +
Sbjct: 114 KAQRGIVYIDQIDKISRKSD 133
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEAN-VREIFDK----AR 571
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 572 QSAPCVLFFDELDSIA 587
++ +++ D++D I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGESESN-----LRKAFEEAE 298
ILL GP GSGKTL+A +A F + + + GE N L+K + +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 299 KNAPSIIFIDEIDSIAPKRE 318
K I++ID+ID I+ K +
Sbjct: 114 KAQRGIVYIDQIDKISRKSD 133
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEAN-VREIFDK----AR 571
+L GP G GKTLLA+ +A F L + GE N ++++ K +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 572 QSAPCVLFFDELDSIA 587
++ +++ D++D I+
Sbjct: 114 KAQRGIVYIDQIDKIS 129
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 242 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 290
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 291 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 334
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 335 LMDG 338
M G
Sbjct: 179 KMTG 182
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 242 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 290
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 291 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 334
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 335 LMDG 338
M G
Sbjct: 179 KMTG 182
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 242 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 290
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 291 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 334
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 335 LMDG 338
M G
Sbjct: 179 KMTG 182
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 242 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 290
P+G I +YGP SGKT +A AVAN G I+ PE KL +++S L
Sbjct: 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLV 118
Query: 291 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 334
+A E A+ A II ID + ++ P+ E +H ++ R++SQ L
Sbjct: 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178
Query: 335 LMDG 338
M G
Sbjct: 179 KMTG 182
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 377 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436
D GR + RIH+K+ + + E I++ GA+L ++CTEA IR + V
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 437 ED 438
+D
Sbjct: 62 KD 63
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 485 GLENVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 539
GL+ VK ++ET + + +K G+ +P+ + F G PG GKT +A +A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93
Query: 540 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 582
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 138
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 485 GLENVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 539
GL+ VK ++ET + + +K G+ +P+ + F G PG GKT +A +A
Sbjct: 28 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 86
Query: 540 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 582
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 87 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 131
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 485 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544
L N R +Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRMQ--LQEPLRHE-------VTP-KNILMIGPTGVGKTEIARRLAKLANAPFI 79
Query: 545 SVKGPELLTMWF--GESEANVREIFDKA 570
V+ + + + E ++ +R++ D A
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 221 RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI-- 278
R ++ PLRH PK IL+ GP G GKT IAR +A A F + +
Sbjct: 37 RMQLQEPLRHE--------VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
Query: 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333
+ + E +S +R + A K + IA R + E RI+ LL
Sbjct: 89 VGYVGKEVDSIIRDLTDSAMK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Query: 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ-LLTLMD--------GLKS 341
+KA + E+N I+FIDEID I K E + +V R V + LL L++ G+
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVK 299
Query: 342 RAHVIVIGA----TNRPNSIDPALRRFGRF 367
H++ I + RP+ + P L+ GR
Sbjct: 300 TDHILFIASGAFQVARPSDLIPELQ--GRL 327
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 26/184 (14%)
Query: 228 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA-RAVANETGAFFFCINGPE------IMS 280
++H ++F + + +GI+L GPPGSGKT+I A+ N + IN + I+S
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS 1312
Query: 281 KLAGESES-NLRKAFEEAEKN--APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337
L + K K+ ++F DEI+ PK +K + + QL+
Sbjct: 1313 ALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN--LPKLDKYGSQNVVLFLRQLMEKQG 1370
Query: 338 GLKS---------RAHVIVIGATNRPNSID--PALRRFGRFDREIDIGVPDEVGRLEVLR 386
K+ R H ++GA N P P RF R + +G P ++
Sbjct: 1371 FWKTPENKWVTIERIH--IVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYE 1428
Query: 387 IHTK 390
I+ K
Sbjct: 1429 IYYK 1432
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 26/184 (14%)
Query: 228 LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIA-RAVANETGAFFFCINGPE------IMS 280
++H ++F + + +GI+L GPPGSGKT+I A+ N + IN + I+S
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILS 1093
Query: 281 KLAGESES-NLRKAFEEAEKN--APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337
L + K K+ ++F DEI+ PK +K + + QL+
Sbjct: 1094 ALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN--LPKLDKYGSQNVVLFLRQLMEKQG 1151
Query: 338 GLKS---------RAHVIVIGATNRPNSID--PALRRFGRFDREIDIGVPDEVGRLEVLR 386
K+ R H ++GA N P P RF R + +G P ++
Sbjct: 1152 FWKTPENKWVTIERIH--IVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYE 1209
Query: 387 IHTK 390
I+ K
Sbjct: 1210 IYYK 1213
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 27/124 (21%)
Query: 242 PKG--ILLYGPPGSGKTLIA-RAVAN--ETGAFFFCING-----PEIMSKLAGESESNL- 290
P+G I +YGP SGKT +A AVAN G I+ P+ KL +++S L
Sbjct: 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLV 117
Query: 291 ------RKAFEEAE----KNAPSIIFIDEIDSIAPKRE------KTHGEVERRIVSQLLT 334
+A E A+ A I+ ID + ++ P+ E +H ++ R++SQ L
Sbjct: 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALR 177
Query: 335 LMDG 338
M G
Sbjct: 178 KMTG 181
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAP-- 302
++L+GPPG+GKT +A +A A + I + +G E +R+A E A +N
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANA-----DVERISAVTSGVKE--IREAIERARQNRNAG 105
Query: 303 --SIIFIDEI 310
+I+F+DE+
Sbjct: 106 RRTILFVDEV 115
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPC- 576
++ +GPPG GKT LA+ IA A+ + +T E +RE ++ARQ+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA---VTSGVKE----IREAIERARQNRNAG 105
Query: 577 ---VLFFDEL 583
+LF DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 75/182 (41%), Gaps = 31/182 (17%)
Query: 243 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK----------LAGESESNLRK 292
+ +LYGPPG GKT A VA E G N ++ SK L S K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 293 AFEEAE--KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350
EEA+ +I +DE+D ++ +R V QL K+ +I+I
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMSGG--------DRGGVGQLAQFCR--KTSTPLILI-- 185
Query: 351 TNRPNSIDPALRRFGRFDREIDIGVPDE---VGRLEVLRIHTKNMKLSDDVDLERIAKDT 407
N N P +R F R +I PD RL + I K KL +V ++R+ + T
Sbjct: 186 CNERNL--PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK-FKLDPNV-IDRLIQTT 241
Query: 408 HG 409
G
Sbjct: 242 RG 243
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 516 KGVLFYGPPGCGKTLLAKAIANE 538
+ + YGPPG GKT A +A E
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQE 100
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 221 RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI-- 278
R ++ PLRH PK IL GP G GKT IAR +A A F + +
Sbjct: 37 RXQLQEPLRHE--------VTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
Query: 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333
+ + E +S +R + A K + IA R + E RI+ LL
Sbjct: 89 VGYVGKEVDSIIRDLTDSAXK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 485 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544
L N R Q +Q P+ H ++P K +L GP G GKT +A+ +A A FI
Sbjct: 30 ALRNRWRRXQ--LQEPLRHE-------VTP-KNILXIGPTGVGKTEIARRLAKLANAPFI 79
Query: 545 SVKGPELLTMWF--GESEANVREIFDKA 570
V+ + + + E ++ +R++ D A
Sbjct: 80 KVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ-LLTLMDG 338
+KA + E+N I+FIDEID I K E + +V R V + LL L++G
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 288
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 243 KGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEA--- 297
+ +L+ G PG+GKT IA +A G F I G EI S ++E+ L +AF +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-LTQAFRRSIGV 129
Query: 298 --EKNAPSIIFIDEIDSIAPKRE 318
+ A + + EID I + +
Sbjct: 130 RIKAGAVHTVSLHEIDVINSRTQ 152
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEANV----R 564
G + VL G PG GKT +A +A + F ++ G E+ ++ ++EA R
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 565 EIFDKARQSAPCVLFFDELDSI 586
I + + A + E+D I
Sbjct: 126 SIGVRIKAGAVHTVSLHEIDVI 147
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 485 GLENVKRELQETVQYPVEHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANEC-- 539
GL+ VK ++ET + + +K G+ +P+ F G PG GKT +A A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHR 93
Query: 540 -----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 582
+ + +SV +L+ + G + +E+ +A VLF DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---XGGVLFIDE 138
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
N++ G E++K+ L + + E + +LF GP G GKT LA I+ E
Sbjct: 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDH--------ILFSGPAGLGKTTLANIISYE 78
Query: 539 CQANFISVKGPEL 551
AN + P +
Sbjct: 79 XSANIKTTAAPXI 91
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 50/130 (38%), Gaps = 20/130 (15%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSI 304
IL GP G GKT +A ++ E A P I E +L + I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI------EKSGDLAAILTNLSEG--DI 109
Query: 305 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVI--------VIGATNRPNS 356
+FIDEI ++P E+ L ++ G A I +IGAT R
Sbjct: 110 LFIDEIHRLSPAIEEVLYPAXE---DYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGX 166
Query: 357 IDPALR-RFG 365
+ LR RFG
Sbjct: 167 LSNPLRDRFG 176
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 570
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCING 275
PK IL+ GP G GKT IAR +A A F +
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 570
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCING 275
PK IL+ GP G GKT IAR +A A F +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 82
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVREIFDKA 570
K +L GP G GKT +A+ +A A FI V+ + + + E ++ +R++ D A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCING 275
PK IL+ GP G GKT IAR +A A F +
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 89
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 219 QIRELVELPLRHPQLFKSI--GVKPPK-----GILLYGPPGSGKTLIARAVANETGAFFF 271
+I +++EL PQ S+ G K I L+GP +GKT IA A+A+ T F+
Sbjct: 74 RIYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH-TVPFYG 132
Query: 272 CIN 274
C+N
Sbjct: 133 CVN 135
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 219 QIRELVELPLRHPQLFKSI--GVKPPK-----GILLYGPPGSGKTLIARAVANETGAFFF 271
+I +++EL PQ S+ G K I L+GP +GKT IA A+A+ T F+
Sbjct: 75 RIYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH-TVPFYG 133
Query: 272 CIN 274
C+N
Sbjct: 134 CVN 136
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540
E+ GLE VK + E + +K K P + GPPG GKT LAK+IA
Sbjct: 81 EEHHGLEKVKERILEYLAV-----QKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLG 133
Query: 541 ANFISV 546
F+ +
Sbjct: 134 RKFVRI 139
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFF--FCINGPEIMSKLAGESES-------NLRKAFE 295
+ L GPPG GKT +A+++A G F + G S++ G + + + +
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 296 EAEKNAPSIIFIDEIDSIA 314
+A K P + +DEID ++
Sbjct: 171 KAGKLNP-VFLLDEIDKMS 188
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 32/118 (27%)
Query: 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-- 538
+DI G E++ + L+ V K G P +LF GPPG GKT A A+A E
Sbjct: 25 DDIVGQEHIVKRLKHYV-----------KTGSMPH--LLFAGPPGVGKTTAALALARELF 71
Query: 539 ---CQANFISVKGPELLTMWFGESEANV-REIFDKARQSAPC------VLFFDELDSI 586
+ NF+ + + E NV RE + ++ P ++F DE D++
Sbjct: 72 GENWRHNFLELNASD-------ERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL 122
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESN---LRKAFEEAEKNA 301
+L GPPG GKT A A+A E F N +L E +R+ +E +
Sbjct: 49 LLFAGPPGVGKTTAALALARE----LFGENWRHNFLELNASDERGINVIREKVKEFARTK 104
Query: 302 P------SIIFIDEIDSI 313
P IIF+DE D++
Sbjct: 105 PIGGASFKIIFLDEADAL 122
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 243 KGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEA--- 297
+ +L+ G PG+GKT IA A G F I G EI S ++E+ L +AF +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA-LTQAFRRSIGV 144
Query: 298 --EKNAPSIIFIDEIDSIAPKREKTHG 322
++ P ++ + I +T G
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVINSRTQG 171
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFGESEA 561
G + VL G PG GKT +A A + F ++ G E+ ++ ++EA
Sbjct: 81 GKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA 133
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 240 KPPKGILLYGPPGSGKTLIARAVANETGAFF 270
+P + +++ G GSGKT IA VA+ETG F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|3B3X|A Chain A, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|3B3X|B Chain B, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|2WK0|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WK0|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2X71|A Chain A, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|2X71|B Chain B, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|4A5R|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
pdb|4A5R|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
Length = 265
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 444 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 501
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 502 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 556
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 389 TKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429
T M LS++VDLE GAD+ ++C E+ + +RE
Sbjct: 14 TSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54
>pdb|2Y91|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
pdb|2Y91|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
Length = 265
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 444 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 501
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 502 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 556
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 132 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 183
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 246 LLYGPPGSGKTLIARAVANET--GAFFFCINGPEIMS----------KLAGESESNLRKA 293
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 294 FEE-AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352
+E + I+FIDE+ ++ K G V+ ++ +R + +IGAT
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAG------NMLKPALARGELRLIGATT 307
Query: 353 ----RPNSIDPAL-RRF 364
R DPAL RRF
Sbjct: 308 LDEYREIEKDPALERRF 324
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 25/137 (18%)
Query: 246 LLYGPPGSGKTLIARAVANE--TGAFFFCINGPEIMS----------KLAGESESNLRKA 293
+L G PG GKT I +A G + G I+S K GE E L+
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 294 FEE-AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352
+E + I+FIDE+ ++ K G V+ ++ +R + +IGAT
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVD------AGNMLKPALARGELRLIGATT 170
Query: 353 ----RPNSIDPAL-RRF 364
R DPAL RRF
Sbjct: 171 LDEYREIEKDPALERRF 187
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 32/150 (21%)
Query: 455 HFKTALGTSNPSALRETVVEVPNVNWED-----IGGLENVKRELQETVQYPVEHPEKFEK 509
H +T S +AL + +++ + E IG E ++R +Q ++ +P
Sbjct: 3 HMQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNP----- 57
Query: 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI--SVKGPELLTM----------WFG 557
+ G PG GKT + + +A + +KG ++++ + G
Sbjct: 58 ---------VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRG 108
Query: 558 ESEANVREIFDKARQS-APCVLFFDELDSI 586
E E ++ + + QS +LF DEL ++
Sbjct: 109 EFEERLKAVIQEVVQSQGEVILFIDELHTV 138
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNL---RKAFEEAEKNA 301
+L GPPG+GKT A A+A + F N + ++ E + R +E + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 302 P------SIIFIDEIDSI 313
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 39/146 (26%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGESESNLR---------KAF 294
+L YGPPG+GKT A+ E + GP++M S++ + S+ R K F
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLMKSRILELNASDERGISIVREKVKNF 113
Query: 295 EEAEKNAPS-------------IIFIDEIDSIAPKRE-------KTHGEVER--RIVSQL 332
+ PS II +DE DS+ + +T+ V R I + +
Sbjct: 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173
Query: 333 LTLMDGLKSRAHVIVIGATNRPNSID 358
++D L S+ A + N+ID
Sbjct: 174 TRIIDPLASQCSKFRFKALDASNAID 199
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552
+LFYGPPG GKT A+ E + GP+L+
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 238 GVKPPKGI--LLYGPPGSGKTLIARAVANETGAF 269
++ PKGI L+ G PG+GKT +A +A E F
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGF 37
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNL---RKAFEEAEKNA 301
+L GPPG+GKT A A+A + F N + ++ E + R +E + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 302 P------SIIFIDEIDSI 313
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
>pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 444 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 501
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 90 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 148
Query: 502 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 556
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 149 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 200
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN--AP 302
++ GPPG+GK A+ +A E G F I+ +I+ + + +KA E E+ P
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVP 60
Query: 303 SIIFIDEIDSIAPKREKTHGEV 324
+ I I+ + PK HG V
Sbjct: 61 DDLIIALIEEVFPK----HGNV 78
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 519 LFYGPPGCGKTLLAKAIANECQANFI--SVKGPELLTM----------WFGESEANVREI 566
+ G PG GKT + + +A + +KG +L + + GE E ++ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 567 F-DKARQSAPCVLFFDELDSI 586
D A+Q +LF DEL ++
Sbjct: 107 LNDLAKQEGNVILFIDELHTM 127
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 506 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 538
KF G P +LFYGPPG GKT A+A E
Sbjct: 39 KFVDEGKLPH--LLFYGPPGTGKTSTIVALARE 69
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 245 ILLYGPPGSGKTLIARAVANE 265
+L YGPPG+GKT A+A E
Sbjct: 49 LLFYGPPGTGKTSTIVALARE 69
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA- 297
+K P + ++G G GK+ V + G ++ E+ S AGE +R+ + EA
Sbjct: 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 92
Query: 298 ---EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL--TLMDGLKSRAHVIVIGATN 352
K +FI+++D+ A + G + + +Q++ TLM+ + +V + G N
Sbjct: 93 EIIRKGNMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 149
Query: 353 R 353
+
Sbjct: 150 K 150
>pdb|3LHR|A Chain A, Crystal Structure Of The Scan Domain From Human Znf24
pdb|3LHR|B Chain B, Crystal Structure Of The Scan Domain From Human Znf24
Length = 93
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 182 APDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLR 229
+PD EIF R + GY D G R+ ++Q+REL L LR
Sbjct: 2 SPDPEIF----------RQRFRQFGYQDSPGPREAVSQLRELCRLWLR 39
>pdb|1W7F|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
pdb|1W7F|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
Length = 307
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 444 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 501
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 115 DLVNYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRK-IGDEV 173
Query: 502 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWF 556
+PE+FE P + P T A+A+A QA + K P ELL W
Sbjct: 174 TNPERFE-----PELNEV--NPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWM 225
>pdb|3FAJ|A Chain A, Structure Of The Structural Protein P131 Of The Archaeal
Virus Acidianus Two-Tailed Virus (Atv)
Length = 151
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 276 PEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 322
PE+ KLAGE E+N R+A +E K A I D++ P R K G
Sbjct: 50 PEVTLKLAGE-EANARRAGDERTKEAIHAIVKMISDAMKPYRNKGSG 95
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 245 ILLYGPPGSGKTLIARAVANETG 267
+LL G PGSGK+ IA A+AN G
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPG 34
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING 275
V+ P LL G PGSGKT + A+ ET I+
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 478 VNWEDIGGLENVKRELQETVQ--YPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI 535
VN+ D + L+E +Q VE P F L G PG GKT L AI
Sbjct: 5 VNFTDKQFENRLNDNLEELIQGKKAVESPTAF-----------LLGGQPGSGKTSLRSAI 53
Query: 536 ANECQANFISV 546
E Q N I +
Sbjct: 54 FEETQGNVIVI 64
>pdb|3SOI|A Chain A, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
pdb|3SOI|B Chain B, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
Length = 258
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 444 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 501
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 70 DLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLILKQIGGPESLKKELRK-IGDEV 128
Query: 502 EHPEKFE 508
+PE+FE
Sbjct: 129 TNPERFE 135
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 250 PPGSGKTLIARAVANETGAFFFCI-NGPEIM 279
PPG+ + L+ARAVA E G F + + PE +
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASNPEFL 177
>pdb|2BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|2BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|4BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
pdb|4BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
Length = 265
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 444 EILNSMAVTDEHFKTALGTSN--PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPV 501
+++N +T++H T + ++LR + N+ + IGG E++K+EL++ + V
Sbjct: 73 DLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLILKQIGGPESLKKELRK-IGDEV 131
Query: 502 EHPEKFE 508
+PE+FE
Sbjct: 132 TNPERFE 138
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 36/152 (23%)
Query: 222 ELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAV---ANETGAF--FFCINGP 276
+++E+ P++ KS K P +L+ G G+GK ++AR + + GAF C + P
Sbjct: 137 KILEIKRLIPKIAKS---KAP--VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIP 191
Query: 277 EIM--SKLAGESESNLRKAFE----EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330
+ + S+L G + A + E +F+DE+ GE+++R+ +
Sbjct: 192 QELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEV-----------GELDQRVQA 240
Query: 331 QLLTLMD---------GLKSRAHVIVIGATNR 353
+LL +++ K + VI ATN+
Sbjct: 241 KLLRVLETGSFTRLGGNQKIEVDIRVISATNK 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,788,797
Number of Sequences: 62578
Number of extensions: 775478
Number of successful extensions: 2780
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2506
Number of HSP's gapped (non-prelim): 233
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)