Query 007764
Match_columns 590
No_of_seqs 537 out of 4106
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 15:01:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-94 2.8E-99 751.4 34.7 540 15-589 2-542 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 1.2E-90 2.7E-95 710.2 30.7 386 203-589 185-619 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 3.5E-80 7.5E-85 699.5 54.4 551 31-589 4-561 (733)
4 KOG0736 Peroxisome assembly fa 100.0 2.3E-65 5.1E-70 536.6 33.4 446 133-589 303-779 (953)
5 KOG0741 AAA+-type ATPase [Post 100.0 4.2E-63 9.1E-68 499.8 33.2 534 30-587 10-611 (744)
6 KOG0735 AAA+-type ATPase [Post 100.0 2E-53 4.3E-58 442.7 38.7 337 240-589 429-775 (952)
7 COG1222 RPT1 ATP-dependent 26S 100.0 4.5E-53 9.8E-58 412.3 26.9 247 200-463 143-392 (406)
8 COG0464 SpoVK ATPases of the A 100.0 2.9E-49 6.2E-54 430.4 28.9 349 226-589 2-350 (494)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.1E-49 2.5E-54 415.4 23.9 252 201-467 427-678 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 1.8E-49 3.9E-54 407.5 24.2 272 196-468 499-774 (802)
11 KOG0736 Peroxisome assembly fa 100.0 8.5E-46 1.8E-50 389.4 23.4 270 200-470 664-939 (953)
12 COG1223 Predicted ATPase (AAA+ 100.0 3.2E-41 6.9E-46 314.5 24.7 305 133-464 50-356 (368)
13 KOG0738 AAA+-type ATPase [Post 100.0 1E-41 2.2E-46 334.4 22.2 264 201-468 205-474 (491)
14 KOG0728 26S proteasome regulat 100.0 1E-41 2.2E-46 316.0 19.8 246 201-463 140-388 (404)
15 KOG0727 26S proteasome regulat 100.0 3.2E-41 6.9E-46 313.1 20.0 246 201-463 148-396 (408)
16 KOG0652 26S proteasome regulat 100.0 8.3E-41 1.8E-45 311.7 22.5 259 174-432 131-398 (424)
17 KOG0726 26S proteasome regulat 100.0 1.4E-41 3E-46 321.4 15.5 246 201-463 178-426 (440)
18 KOG0734 AAA+-type ATPase conta 100.0 6.5E-41 1.4E-45 339.5 20.8 234 202-436 298-531 (752)
19 KOG0735 AAA+-type ATPase [Post 100.0 1.2E-40 2.7E-45 347.4 23.2 230 203-432 662-891 (952)
20 KOG0729 26S proteasome regulat 100.0 2E-40 4.3E-45 310.0 17.6 230 201-430 170-402 (435)
21 KOG0732 AAA+-type ATPase conta 100.0 7.3E-40 1.6E-44 360.9 20.7 383 203-586 260-665 (1080)
22 PTZ00454 26S protease regulato 100.0 1.5E-37 3.3E-42 324.0 25.8 246 201-463 138-386 (398)
23 KOG0739 AAA+-type ATPase [Post 100.0 3E-38 6.5E-43 299.7 15.8 228 202-432 127-356 (439)
24 KOG0731 AAA+-type ATPase conta 100.0 1.7E-37 3.6E-42 334.4 22.4 230 203-433 306-540 (774)
25 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-37 2.8E-42 306.3 19.5 229 203-433 87-318 (386)
26 TIGR01243 CDC48 AAA family ATP 100.0 1.9E-36 4E-41 343.2 26.5 268 202-469 447-716 (733)
27 COG0464 SpoVK ATPases of the A 100.0 4.2E-36 9.1E-41 327.1 25.5 251 201-467 235-487 (494)
28 PRK03992 proteasome-activating 100.0 6.6E-36 1.4E-40 313.6 25.3 251 201-468 124-377 (389)
29 PTZ00361 26 proteosome regulat 100.0 6.9E-36 1.5E-40 313.1 23.2 246 201-463 176-424 (438)
30 COG0465 HflB ATP-dependent Zn 100.0 7.5E-35 1.6E-39 309.4 20.3 234 203-437 145-381 (596)
31 CHL00195 ycf46 Ycf46; Provisio 100.0 4.1E-33 8.8E-38 296.5 26.1 243 203-468 223-468 (489)
32 TIGR01242 26Sp45 26S proteasom 100.0 5.9E-33 1.3E-37 290.4 25.2 245 201-462 115-362 (364)
33 KOG0651 26S proteasome regulat 100.0 3.3E-34 7.1E-39 274.3 13.5 229 201-429 125-356 (388)
34 TIGR01241 FtsH_fam ATP-depende 100.0 6.6E-33 1.4E-37 301.0 23.9 229 202-431 49-280 (495)
35 TIGR03689 pup_AAA proteasome A 100.0 2.3E-32 4.9E-37 290.0 22.8 222 201-428 175-412 (512)
36 TIGR02639 ClpA ATP-dependent C 100.0 2.3E-32 5.1E-37 308.7 22.5 342 204-590 178-569 (731)
37 CHL00176 ftsH cell division pr 100.0 1.6E-31 3.5E-36 292.9 23.0 229 203-432 178-409 (638)
38 PRK11034 clpA ATP-dependent Cl 100.0 3.9E-31 8.4E-36 294.6 22.4 346 206-590 184-573 (758)
39 COG1222 RPT1 ATP-dependent 26S 100.0 3.8E-32 8.3E-37 265.9 9.1 117 472-588 142-258 (406)
40 KOG0740 AAA+-type ATPase [Post 100.0 1.1E-30 2.4E-35 267.0 17.1 262 201-469 146-410 (428)
41 PRK10733 hflB ATP-dependent me 100.0 1E-29 2.2E-34 282.2 24.1 230 204-434 148-380 (644)
42 PLN00020 ribulose bisphosphate 100.0 8.3E-30 1.8E-34 253.9 20.6 219 205-428 112-353 (413)
43 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.2E-29 2.5E-34 291.1 21.0 203 226-434 1614-1865(2281)
44 TIGR03345 VI_ClpV1 type VI sec 100.0 4.8E-28 1E-32 275.1 25.4 186 204-412 183-391 (852)
45 COG0542 clpA ATP-binding subun 100.0 5.4E-28 1.2E-32 263.3 21.8 353 205-590 167-609 (786)
46 CHL00095 clpC Clp protease ATP 100.0 6.2E-28 1.3E-32 275.8 22.3 353 205-590 176-627 (821)
47 KOG0727 26S proteasome regulat 99.9 4.9E-28 1.1E-32 225.4 7.3 115 474-588 148-262 (408)
48 CHL00195 ycf46 Ycf46; Provisio 99.9 5.4E-26 1.2E-30 242.1 21.9 251 301-588 81-332 (489)
49 KOG0739 AAA+-type ATPase [Post 99.9 1.7E-27 3.8E-32 226.6 8.9 118 471-589 123-240 (439)
50 PRK10865 protein disaggregatio 99.9 1.2E-25 2.6E-30 256.5 25.3 184 205-411 175-381 (857)
51 TIGR03346 chaperone_ClpB ATP-d 99.9 1.6E-25 3.4E-30 256.7 26.4 185 205-412 170-377 (852)
52 KOG0729 26S proteasome regulat 99.9 4.1E-26 9E-31 214.1 8.2 127 463-589 159-285 (435)
53 KOG0738 AAA+-type ATPase [Post 99.9 2.4E-26 5.3E-31 226.4 6.2 116 472-588 203-318 (491)
54 KOG0728 26S proteasome regulat 99.9 3.5E-25 7.5E-30 206.2 7.3 116 474-589 140-255 (404)
55 KOG0726 26S proteasome regulat 99.9 6.4E-25 1.4E-29 208.6 6.1 115 474-588 178-292 (440)
56 KOG0737 AAA+-type ATPase [Post 99.9 2.2E-24 4.8E-29 212.9 5.3 111 477-587 88-199 (386)
57 KOG0652 26S proteasome regulat 99.9 6.2E-24 1.3E-28 199.0 6.7 114 475-588 165-278 (424)
58 KOG0734 AAA+-type ATPase conta 99.9 7E-24 1.5E-28 216.1 7.1 113 475-588 298-410 (752)
59 COG1223 Predicted ATPase (AAA+ 99.9 6.2E-24 1.3E-28 199.1 5.7 109 475-587 115-223 (368)
60 PTZ00454 26S protease regulato 99.9 2.5E-23 5.4E-28 217.4 8.1 116 473-588 137-252 (398)
61 KOG0731 AAA+-type ATPase conta 99.9 1.2E-22 2.6E-27 219.9 7.4 112 476-588 306-417 (774)
62 KOG0651 26S proteasome regulat 99.9 3.2E-22 6.9E-27 192.3 8.3 113 476-588 127-239 (388)
63 TIGR03689 pup_AAA proteasome A 99.9 2.6E-22 5.6E-27 213.5 6.8 116 473-588 174-303 (512)
64 PRK03992 proteasome-activating 99.9 3.6E-22 7.9E-27 209.8 7.8 118 471-588 121-238 (389)
65 PTZ00361 26 proteosome regulat 99.8 7.9E-22 1.7E-26 207.2 6.6 115 474-588 176-290 (438)
66 PLN00020 ribulose bisphosphate 99.8 1E-21 2.2E-26 196.2 6.7 80 510-589 143-227 (413)
67 PF00004 AAA: ATPase family as 99.8 2.8E-20 6.2E-25 165.7 15.1 130 245-375 1-132 (132)
68 KOG0732 AAA+-type ATPase conta 99.8 3.5E-21 7.7E-26 213.7 5.5 114 476-589 260-378 (1080)
69 KOG0740 AAA+-type ATPase [Post 99.8 9.8E-21 2.1E-25 194.1 6.9 113 474-587 146-258 (428)
70 CHL00181 cbbX CbbX; Provisiona 99.8 7.3E-19 1.6E-23 176.7 17.8 212 208-430 23-258 (287)
71 TIGR01241 FtsH_fam ATP-depende 99.8 2.7E-20 5.9E-25 202.4 7.2 114 474-588 48-161 (495)
72 COG0465 HflB ATP-dependent Zn 99.8 2E-20 4.3E-25 199.6 5.7 112 476-588 145-256 (596)
73 TIGR02880 cbbX_cfxQ probable R 99.8 1.1E-18 2.4E-23 175.6 17.9 212 209-430 23-257 (284)
74 TIGR01242 26Sp45 26S proteasom 99.8 4.3E-20 9.4E-25 193.4 7.1 116 473-588 114-229 (364)
75 TIGR02881 spore_V_K stage V sp 99.8 4.6E-18 9.9E-23 169.9 18.8 176 207-393 5-195 (261)
76 CHL00176 ftsH cell division pr 99.7 1.5E-18 3.3E-23 190.9 7.3 112 476-588 178-289 (638)
77 KOG0744 AAA+-type ATPase [Post 99.7 5.3E-18 1.1E-22 164.1 9.7 182 207-390 141-341 (423)
78 KOG0742 AAA+-type ATPase [Post 99.7 5.4E-17 1.2E-21 161.3 16.0 178 240-422 382-588 (630)
79 KOG0741 AAA+-type ATPase [Post 99.7 2.3E-18 5E-23 175.9 6.2 114 475-588 213-338 (744)
80 KOG0743 AAA+-type ATPase [Post 99.7 1.5E-16 3.3E-21 162.0 16.2 178 205-390 198-384 (457)
81 PF05496 RuvB_N: Holliday junc 99.7 1.6E-16 3.4E-21 149.6 14.9 182 201-411 17-215 (233)
82 KOG1051 Chaperone HSP104 and r 99.7 8.4E-16 1.8E-20 170.6 22.6 162 207-391 185-365 (898)
83 CHL00206 ycf2 Ycf2; Provisiona 99.7 3E-17 6.6E-22 190.0 9.0 87 503-589 1618-1747(2281)
84 TIGR00763 lon ATP-dependent pr 99.6 3.7E-15 8.1E-20 170.0 16.8 164 208-389 320-505 (775)
85 TIGR00635 ruvB Holliday juncti 99.6 1.5E-14 3.3E-19 148.2 18.9 188 206-423 2-206 (305)
86 PF00004 AAA: ATPase family as 99.6 8.7E-16 1.9E-20 136.7 8.5 72 518-589 1-73 (132)
87 PRK00080 ruvB Holliday junctio 99.6 2.1E-14 4.5E-19 148.4 19.5 193 201-423 18-227 (328)
88 PRK10733 hflB ATP-dependent me 99.6 7.6E-16 1.6E-20 171.6 7.0 111 477-588 148-258 (644)
89 COG2255 RuvB Holliday junction 99.6 2.5E-14 5.4E-19 137.1 16.2 183 201-412 19-218 (332)
90 COG2256 MGS1 ATPase related to 99.6 2E-14 4.3E-19 144.2 15.8 177 201-415 17-210 (436)
91 CHL00181 cbbX CbbX; Provisiona 99.6 8.6E-16 1.9E-20 154.5 6.0 104 480-587 22-135 (287)
92 TIGR02881 spore_V_K stage V sp 99.6 8E-16 1.7E-20 153.7 5.1 105 480-588 5-119 (261)
93 TIGR02880 cbbX_cfxQ probable R 99.6 1.1E-15 2.4E-20 153.9 5.5 102 482-587 23-134 (284)
94 COG0466 Lon ATP-dependent Lon 99.5 2.7E-13 5.9E-18 144.8 19.6 167 205-389 320-508 (782)
95 KOG2004 Mitochondrial ATP-depe 99.5 3.9E-14 8.5E-19 150.2 12.7 165 207-389 410-596 (906)
96 PF02359 CDC48_N: Cell divisio 99.5 3.8E-13 8.3E-18 110.1 9.8 80 30-111 1-85 (87)
97 PRK04195 replication factor C 99.5 2.2E-12 4.8E-17 140.0 18.2 188 202-418 8-203 (482)
98 PRK14956 DNA polymerase III su 99.4 2.8E-12 6.1E-17 135.1 18.2 182 201-416 11-221 (484)
99 PRK14962 DNA polymerase III su 99.4 3.6E-12 7.8E-17 136.4 18.1 177 202-413 8-214 (472)
100 PRK07003 DNA polymerase III su 99.4 3.7E-12 8.1E-17 139.0 18.3 182 202-417 10-220 (830)
101 PRK10787 DNA-binding ATP-depen 99.4 2.3E-12 5E-17 145.8 17.2 163 208-389 322-506 (784)
102 PF05496 RuvB_N: Holliday junc 99.4 9.7E-14 2.1E-18 130.8 4.7 97 477-589 20-116 (233)
103 PRK00149 dnaA chromosomal repl 99.4 6.4E-12 1.4E-16 135.4 19.4 158 242-412 148-317 (450)
104 PRK07940 DNA polymerase III su 99.4 5.2E-12 1.1E-16 132.1 17.5 185 206-418 3-214 (394)
105 TIGR02928 orc1/cdc6 family rep 99.4 1.6E-11 3.4E-16 129.2 21.3 203 208-430 15-258 (365)
106 PRK12323 DNA polymerase III su 99.4 2.6E-12 5.6E-17 138.6 15.3 180 202-415 10-223 (700)
107 TIGR00362 DnaA chromosomal rep 99.4 8.9E-12 1.9E-16 132.6 19.2 168 242-422 136-314 (405)
108 PRK13342 recombination factor 99.4 7.6E-12 1.7E-16 133.2 18.1 173 202-413 6-192 (413)
109 PRK00411 cdc6 cell division co 99.4 2.3E-11 5E-16 129.4 20.9 204 207-429 29-265 (394)
110 PF05673 DUF815: Protein of un 99.4 2.4E-11 5.1E-16 116.3 18.2 167 201-395 20-213 (249)
111 KOG2028 ATPase related to the 99.4 1.4E-11 3E-16 121.7 16.6 191 202-430 132-349 (554)
112 KOG0744 AAA+-type ATPase [Post 99.4 2E-13 4.3E-18 132.7 3.3 105 480-588 141-264 (423)
113 TIGR02902 spore_lonB ATP-depen 99.4 1.5E-11 3.3E-16 134.2 18.0 198 202-428 59-314 (531)
114 TIGR00390 hslU ATP-dependent p 99.4 6.1E-12 1.3E-16 129.5 13.2 176 209-386 13-343 (441)
115 PLN03025 replication factor C 99.4 2.1E-11 4.4E-16 125.6 17.3 178 201-413 6-196 (319)
116 TIGR03420 DnaA_homol_Hda DnaA 99.4 4.3E-11 9.4E-16 117.0 18.7 187 205-424 12-207 (226)
117 PRK14088 dnaA chromosomal repl 99.4 2.3E-11 5E-16 129.9 17.9 157 243-411 131-299 (440)
118 PRK14960 DNA polymerase III su 99.3 2.7E-11 5.8E-16 131.1 17.6 178 202-413 9-215 (702)
119 PRK05201 hslU ATP-dependent pr 99.3 6.8E-12 1.5E-16 129.2 12.0 176 209-386 16-345 (443)
120 PRK14949 DNA polymerase III su 99.3 4.2E-11 9E-16 133.4 19.0 181 201-415 9-218 (944)
121 PHA02544 44 clamp loader, smal 99.3 2.1E-11 4.6E-16 125.6 15.7 158 201-388 14-172 (316)
122 PF00308 Bac_DnaA: Bacterial d 99.3 7.9E-11 1.7E-15 114.2 18.6 156 243-409 35-200 (219)
123 PRK14961 DNA polymerase III su 99.3 4.6E-11 1E-15 125.0 18.0 185 202-421 10-223 (363)
124 PRK07994 DNA polymerase III su 99.3 4.9E-11 1.1E-15 130.9 18.6 179 202-414 10-217 (647)
125 PRK05342 clpX ATP-dependent pr 99.3 7E-11 1.5E-15 124.3 18.9 218 210-429 73-381 (412)
126 PRK06645 DNA polymerase III su 99.3 6E-11 1.3E-15 127.6 18.5 184 202-413 15-225 (507)
127 PTZ00112 origin recognition co 99.3 6E-11 1.3E-15 130.2 17.9 179 208-406 755-967 (1164)
128 PRK06893 DNA replication initi 99.3 3.2E-11 6.9E-16 118.0 14.4 151 243-413 40-199 (229)
129 PRK12402 replication factor C 99.3 1.3E-10 2.8E-15 120.9 19.6 179 203-410 10-219 (337)
130 PRK14963 DNA polymerase III su 99.3 8.3E-11 1.8E-15 127.0 18.6 179 201-413 7-213 (504)
131 PRK08084 DNA replication initi 99.3 2.4E-10 5.3E-15 112.2 20.0 175 204-413 18-205 (235)
132 PRK08727 hypothetical protein; 99.3 7.2E-11 1.6E-15 115.7 16.0 150 242-413 41-200 (233)
133 PRK14086 dnaA chromosomal repl 99.3 7.6E-11 1.6E-15 127.7 17.4 167 243-420 315-490 (617)
134 PRK05342 clpX ATP-dependent pr 99.3 3.1E-12 6.7E-17 134.5 5.6 107 482-588 72-187 (412)
135 cd00009 AAA The AAA+ (ATPases 99.3 9.7E-11 2.1E-15 105.5 14.7 137 212-374 2-150 (151)
136 COG2255 RuvB Holliday junction 99.3 2.3E-12 5E-17 123.7 4.1 98 477-590 22-119 (332)
137 TIGR02640 gas_vesic_GvpN gas v 99.3 1.5E-10 3.3E-15 115.5 17.2 134 241-389 20-198 (262)
138 PRK14964 DNA polymerase III su 99.3 1.8E-10 3.9E-15 123.0 18.3 177 202-412 7-212 (491)
139 PRK14958 DNA polymerase III su 99.3 1.2E-10 2.6E-15 126.0 17.2 185 202-421 10-223 (509)
140 KOG0989 Replication factor C, 99.3 8.3E-11 1.8E-15 114.3 14.2 182 202-415 30-228 (346)
141 PRK14959 DNA polymerase III su 99.3 1.2E-10 2.7E-15 126.6 16.9 179 202-414 10-217 (624)
142 PRK12422 chromosomal replicati 99.3 9.1E-11 2E-15 125.1 15.5 158 243-412 142-308 (445)
143 TIGR00390 hslU ATP-dependent p 99.3 7.3E-12 1.6E-16 128.9 6.7 89 482-570 13-104 (441)
144 PRK08691 DNA polymerase III su 99.2 1.7E-10 3.7E-15 126.1 17.6 185 202-421 10-223 (709)
145 PRK08903 DnaA regulatory inact 99.2 5.7E-10 1.2E-14 109.2 18.6 178 204-421 14-202 (227)
146 TIGR00763 lon ATP-dependent pr 99.2 8.1E-12 1.8E-16 142.8 6.3 101 481-589 320-429 (775)
147 PRK05896 DNA polymerase III su 99.2 2.8E-10 6.1E-15 123.2 17.6 177 202-412 10-215 (605)
148 PRK14952 DNA polymerase III su 99.2 4.6E-10 1E-14 122.6 19.4 175 202-410 7-212 (584)
149 PRK07764 DNA polymerase III su 99.2 3.4E-10 7.3E-15 128.3 19.0 177 201-411 8-215 (824)
150 PRK13341 recombination factor 99.2 2E-10 4.2E-15 128.7 16.6 171 202-411 22-211 (725)
151 TIGR00382 clpX endopeptidase C 99.2 2.6E-10 5.6E-15 119.3 16.3 218 210-429 79-387 (413)
152 PRK14957 DNA polymerase III su 99.2 5.9E-10 1.3E-14 120.7 19.3 177 202-412 10-215 (546)
153 PRK14951 DNA polymerase III su 99.2 3.3E-10 7.1E-15 124.2 17.4 177 202-412 10-220 (618)
154 COG1474 CDC6 Cdc6-related prot 99.2 1.7E-09 3.8E-14 112.1 21.8 206 208-434 17-253 (366)
155 TIGR00382 clpX endopeptidase C 99.2 1.2E-11 2.7E-16 129.2 5.7 108 481-588 77-195 (413)
156 PRK07133 DNA polymerase III su 99.2 5.6E-10 1.2E-14 123.3 18.9 184 202-413 12-215 (725)
157 PRK05642 DNA replication initi 99.2 7.6E-10 1.6E-14 108.5 17.3 147 242-410 45-201 (234)
158 PRK05563 DNA polymerase III su 99.2 6.4E-10 1.4E-14 122.1 18.5 175 202-410 10-213 (559)
159 PRK14970 DNA polymerase III su 99.2 5.4E-10 1.2E-14 117.6 17.3 175 201-409 10-201 (367)
160 TIGR02903 spore_lon_C ATP-depe 99.2 1.9E-09 4E-14 119.8 22.1 164 203-393 149-370 (615)
161 TIGR02397 dnaX_nterm DNA polym 99.2 6.1E-10 1.3E-14 116.7 17.3 177 201-411 7-212 (355)
162 PRK14969 DNA polymerase III su 99.2 3.6E-10 7.9E-15 123.1 16.0 177 202-412 10-215 (527)
163 COG2256 MGS1 ATPase related to 99.2 4.2E-11 9.2E-16 120.6 7.0 92 477-588 20-118 (436)
164 PRK06305 DNA polymerase III su 99.2 1.3E-09 2.7E-14 116.8 18.6 177 202-412 11-217 (451)
165 PRK06647 DNA polymerase III su 99.2 9.3E-10 2E-14 120.4 17.9 177 202-412 10-215 (563)
166 PRK14965 DNA polymerase III su 99.2 6E-10 1.3E-14 122.9 16.3 177 202-412 10-215 (576)
167 PHA02244 ATPase-like protein 99.2 1.5E-09 3.2E-14 110.6 17.5 127 240-381 117-266 (383)
168 PRK14953 DNA polymerase III su 99.1 1.6E-09 3.5E-14 116.7 18.6 182 202-411 10-214 (486)
169 PRK14087 dnaA chromosomal repl 99.1 8.5E-10 1.8E-14 118.1 16.2 169 242-423 141-324 (450)
170 TIGR02639 ClpA ATP-dependent C 99.1 5.7E-11 1.2E-15 135.1 7.6 75 514-588 202-288 (731)
171 PRK00440 rfc replication facto 99.1 1.8E-09 3.9E-14 111.4 17.6 177 202-413 11-199 (319)
172 COG1123 ATPase components of v 99.1 5.8E-10 1.2E-14 118.5 13.7 71 509-589 311-383 (539)
173 PRK11034 clpA ATP-dependent Cl 99.1 4.9E-10 1.1E-14 126.1 14.0 162 209-389 459-666 (758)
174 PRK14948 DNA polymerase III su 99.1 2.1E-09 4.6E-14 118.9 17.6 176 201-411 9-216 (620)
175 COG0488 Uup ATPase components 99.1 3.2E-10 7E-15 122.4 10.6 31 236-266 23-53 (530)
176 PF07724 AAA_2: AAA domain (Cd 99.1 8.7E-11 1.9E-15 109.0 5.2 72 513-588 1-82 (171)
177 PRK06620 hypothetical protein; 99.1 2.4E-09 5.2E-14 103.3 15.3 134 243-412 45-184 (214)
178 PRK14955 DNA polymerase III su 99.1 1.3E-09 2.8E-14 115.4 14.7 178 201-412 9-223 (397)
179 CHL00095 clpC Clp protease ATP 99.1 1.3E-10 2.9E-15 133.7 7.4 97 479-588 177-285 (821)
180 TIGR01650 PD_CobS cobaltochela 99.1 4.6E-10 9.9E-15 113.1 10.4 137 241-391 63-235 (327)
181 PRK09111 DNA polymerase III su 99.1 4.8E-09 1E-13 115.3 19.3 183 202-412 18-228 (598)
182 PRK14954 DNA polymerase III su 99.1 4.9E-09 1.1E-13 115.5 19.0 183 202-412 10-223 (620)
183 smart00382 AAA ATPases associa 99.1 7.3E-10 1.6E-14 98.8 10.2 128 242-376 2-147 (148)
184 COG0593 DnaA ATPase involved i 99.1 4.2E-09 9.1E-14 109.0 16.7 157 241-409 112-278 (408)
185 PRK08451 DNA polymerase III su 99.1 6.3E-09 1.4E-13 112.2 18.5 184 202-420 8-220 (535)
186 KOG0927 Predicted transporter 99.1 1.1E-09 2.4E-14 113.9 12.1 31 509-539 410-440 (614)
187 KOG1969 DNA replication checkp 99.1 3.3E-09 7.2E-14 113.7 15.8 201 203-418 266-511 (877)
188 COG1219 ClpX ATP-dependent pro 99.0 2.4E-10 5.2E-15 111.4 5.7 105 481-588 61-176 (408)
189 PRK13407 bchI magnesium chelat 99.0 9.4E-10 2E-14 112.4 9.9 159 203-388 3-215 (334)
190 PRK14950 DNA polymerase III su 99.0 1E-08 2.2E-13 113.8 18.4 176 201-410 9-214 (585)
191 PF07728 AAA_5: AAA domain (dy 99.0 1.9E-10 4.1E-15 103.4 4.0 109 244-367 1-139 (139)
192 PRK09087 hypothetical protein; 99.0 3.5E-09 7.6E-14 103.0 12.8 141 242-410 44-188 (226)
193 COG2607 Predicted ATPase (AAA+ 99.0 1.4E-08 3E-13 95.7 15.6 168 201-396 53-246 (287)
194 smart00382 AAA ATPases associa 99.0 1.3E-09 2.9E-14 97.1 8.1 74 515-588 2-92 (148)
195 PRK09112 DNA polymerase III su 99.0 2.8E-08 6E-13 102.8 18.2 184 203-415 18-238 (351)
196 PRK11331 5-methylcytosine-spec 99.0 9.1E-09 2E-13 107.6 14.6 141 207-375 174-357 (459)
197 COG5271 MDN1 AAA ATPase contai 98.9 6.4E-09 1.4E-13 118.3 13.2 134 240-389 886-1047(4600)
198 PRK00080 ruvB Holliday junctio 98.9 7.3E-10 1.6E-14 114.6 5.6 95 478-588 22-116 (328)
199 PRK14971 DNA polymerase III su 98.9 3.1E-08 6.7E-13 109.8 18.4 177 202-412 11-217 (614)
200 TIGR03345 VI_ClpV1 type VI sec 98.9 4.1E-08 8.8E-13 112.9 19.1 195 208-426 566-830 (852)
201 TIGR00635 ruvB Holliday juncti 98.9 1E-09 2.2E-14 112.5 5.4 95 479-589 2-96 (305)
202 COG0466 Lon ATP-dependent Lon 98.9 1.7E-09 3.8E-14 116.1 7.1 99 484-590 326-433 (782)
203 PRK10865 protein disaggregatio 98.9 1.9E-09 4.2E-14 124.0 8.1 75 514-588 198-285 (857)
204 COG0714 MoxR-like ATPases [Gen 98.9 1.5E-08 3.2E-13 104.8 13.8 129 241-386 42-200 (329)
205 PRK10787 DNA-binding ATP-depen 98.9 1.6E-09 3.5E-14 123.0 6.8 101 481-589 322-431 (784)
206 PF05621 TniB: Bacterial TniB 98.9 5.4E-08 1.2E-12 96.4 16.7 200 212-433 41-276 (302)
207 PRK05201 hslU ATP-dependent pr 98.9 8E-10 1.7E-14 114.1 3.8 95 481-575 15-112 (443)
208 CHL00081 chlI Mg-protoporyphyr 98.9 8.5E-09 1.8E-13 105.7 11.1 160 203-388 12-231 (350)
209 PRK07471 DNA polymerase III su 98.9 7.4E-08 1.6E-12 100.2 17.8 181 203-414 14-235 (365)
210 PRK10636 putative ABC transpor 98.9 3.9E-09 8.5E-14 118.5 8.9 31 236-266 21-51 (638)
211 COG4172 ABC-type uncharacteriz 98.9 2.9E-08 6.4E-13 100.1 13.9 71 510-589 308-379 (534)
212 PF07724 AAA_2: AAA domain (Cd 98.9 7.7E-09 1.7E-13 96.0 9.0 112 241-354 2-130 (171)
213 TIGR00678 holB DNA polymerase 98.9 3.4E-08 7.3E-13 93.7 13.4 143 242-410 14-184 (188)
214 PRK13342 recombination factor 98.9 3.5E-09 7.6E-14 112.9 7.3 90 479-588 10-106 (413)
215 PRK05564 DNA polymerase III su 98.9 9.9E-08 2.1E-12 98.1 17.6 172 206-412 2-185 (313)
216 KOG0743 AAA+-type ATPase [Post 98.9 3.1E-09 6.8E-14 109.1 6.1 102 478-587 198-299 (457)
217 TIGR02030 BchI-ChlI magnesium 98.8 2.7E-08 5.8E-13 102.1 13.0 157 206-388 2-218 (337)
218 TIGR03346 chaperone_ClpB ATP-d 98.8 1.2E-07 2.6E-12 109.8 19.7 162 208-389 565-776 (852)
219 PRK07940 DNA polymerase III su 98.8 2.6E-09 5.7E-14 111.9 5.6 103 479-588 3-131 (394)
220 KOG0745 Putative ATP-dependent 98.8 4.3E-09 9.3E-14 106.6 6.8 74 516-589 227-306 (564)
221 KOG0742 AAA+-type ATPase [Post 98.8 2.8E-09 6.1E-14 106.9 5.4 73 513-587 382-456 (630)
222 COG1224 TIP49 DNA helicase TIP 98.8 4.4E-07 9.6E-12 90.2 20.1 60 208-278 39-103 (450)
223 KOG2004 Mitochondrial ATP-depe 98.8 3.8E-09 8.2E-14 113.0 5.9 97 484-589 414-520 (906)
224 TIGR02655 circ_KaiC circadian 98.8 3.8E-07 8.3E-12 99.1 21.6 76 511-586 259-365 (484)
225 PRK14962 DNA polymerase III su 98.8 4.8E-09 1E-13 112.5 6.6 94 477-588 10-131 (472)
226 TIGR01650 PD_CobS cobaltochela 98.8 2.1E-09 4.6E-14 108.3 3.6 78 511-589 60-149 (327)
227 COG2812 DnaX DNA polymerase II 98.8 2.6E-08 5.6E-13 106.2 12.0 183 202-412 10-215 (515)
228 PF01078 Mg_chelatase: Magnesi 98.8 5.9E-09 1.3E-13 98.0 6.3 46 207-267 2-47 (206)
229 TIGR00602 rad24 checkpoint pro 98.8 6.3E-08 1.4E-12 106.7 15.3 199 201-418 77-324 (637)
230 COG5271 MDN1 AAA ATPase contai 98.8 1.5E-07 3.3E-12 107.6 18.0 132 241-388 1542-1702(4600)
231 TIGR02640 gas_vesic_GvpN gas v 98.8 7.5E-09 1.6E-13 103.4 6.7 73 515-589 21-120 (262)
232 TIGR03269 met_CoM_red_A2 methy 98.8 4.1E-08 8.9E-13 108.2 13.2 30 237-266 21-50 (520)
233 PRK15439 autoinducer 2 ABC tra 98.8 2E-08 4.3E-13 110.3 10.5 30 237-266 32-61 (510)
234 PRK09700 D-allose transporter 98.8 2.7E-08 5.8E-13 109.4 11.3 30 237-266 26-55 (510)
235 KOG0991 Replication factor C, 98.8 6.3E-08 1.4E-12 90.7 11.8 185 202-418 21-215 (333)
236 PRK13531 regulatory ATPase Rav 98.8 6.7E-08 1.4E-12 102.0 13.3 133 240-387 37-192 (498)
237 PRK14956 DNA polymerase III su 98.8 6.2E-09 1.3E-13 110.1 5.6 93 478-588 15-135 (484)
238 PRK10938 putative molybdenum t 98.8 1.8E-08 3.9E-13 110.2 9.4 31 236-266 23-53 (490)
239 PRK04195 replication factor C 98.8 9E-09 1.9E-13 111.9 6.9 96 478-588 11-112 (482)
240 PRK10762 D-ribose transporter 98.8 3.3E-08 7.1E-13 108.4 11.2 30 237-266 25-54 (501)
241 COG0470 HolB ATPase involved i 98.8 5.7E-08 1.2E-12 100.4 12.4 148 209-385 2-177 (325)
242 PRK11147 ABC transporter ATPas 98.8 4.5E-08 9.7E-13 110.2 12.2 31 236-266 23-53 (635)
243 cd00009 AAA The AAA+ (ATPases 98.8 2E-08 4.3E-13 90.2 7.6 73 514-586 18-96 (151)
244 COG0542 clpA ATP-binding subun 98.8 7.9E-08 1.7E-12 106.4 13.7 159 208-389 491-705 (786)
245 PRK13549 xylose transporter AT 98.8 2.5E-08 5.5E-13 109.4 9.7 31 237-267 26-56 (506)
246 PRK12323 DNA polymerase III su 98.7 8.2E-09 1.8E-13 111.9 5.3 94 477-588 12-138 (700)
247 KOG0989 Replication factor C, 98.7 6.7E-09 1.5E-13 101.2 4.0 96 477-588 32-143 (346)
248 COG1220 HslU ATP-dependent pro 98.7 1.2E-07 2.5E-12 93.6 12.4 83 302-386 251-346 (444)
249 PRK14960 DNA polymerase III su 98.7 1.2E-08 2.5E-13 111.0 6.0 93 478-588 12-132 (702)
250 TIGR03015 pepcterm_ATPase puta 98.7 3.9E-07 8.5E-12 91.5 16.7 174 243-430 44-250 (269)
251 PRK15134 microcin C ABC transp 98.7 7.4E-08 1.6E-12 106.4 12.4 31 237-267 30-60 (529)
252 PRK10982 galactose/methyl gala 98.7 4.8E-08 1E-12 106.9 10.7 31 236-266 18-48 (491)
253 PRK15064 ABC transporter ATP-b 98.7 1.3E-07 2.7E-12 104.6 14.1 31 236-266 21-51 (530)
254 PLN03025 replication factor C 98.7 1.6E-08 3.4E-13 104.2 6.3 92 478-588 10-113 (319)
255 KOG2028 ATPase related to the 98.7 2.2E-08 4.8E-13 99.3 6.9 66 516-588 163-236 (554)
256 PRK11288 araG L-arabinose tran 98.7 3.3E-08 7.1E-13 108.4 9.0 30 237-266 25-54 (501)
257 PRK07003 DNA polymerase III su 98.7 1.3E-08 2.9E-13 111.6 5.8 93 478-588 13-133 (830)
258 PRK07399 DNA polymerase III su 98.7 2.6E-07 5.7E-12 94.3 14.9 180 206-416 2-220 (314)
259 PF00158 Sigma54_activat: Sigm 98.7 3E-08 6.5E-13 91.8 7.2 130 210-367 1-154 (168)
260 PRK14958 DNA polymerase III su 98.7 1.3E-08 2.8E-13 110.4 5.5 93 478-588 13-133 (509)
261 PF07728 AAA_5: AAA domain (dy 98.7 2.3E-09 5E-14 96.4 -0.3 71 517-589 1-80 (139)
262 PRK05707 DNA polymerase III su 98.7 3.1E-07 6.6E-12 94.3 15.1 150 242-413 22-199 (328)
263 PLN03073 ABC transporter F fam 98.7 4E-08 8.7E-13 111.1 9.1 30 236-265 197-226 (718)
264 TIGR02442 Cob-chelat-sub cobal 98.7 8.2E-08 1.8E-12 107.5 11.3 156 206-387 2-212 (633)
265 PRK04132 replication factor C 98.7 3E-07 6.5E-12 104.0 15.5 156 241-418 563-732 (846)
266 PF07726 AAA_3: ATPase family 98.7 9E-09 2E-13 88.8 2.6 104 244-367 1-129 (131)
267 PRK14961 DNA polymerase III su 98.7 2.9E-08 6.3E-13 103.9 7.0 93 478-588 13-133 (363)
268 PRK08116 hypothetical protein; 98.7 1.2E-07 2.5E-12 94.8 10.6 101 242-354 114-221 (268)
269 PRK14949 DNA polymerase III su 98.7 2.6E-08 5.6E-13 111.5 6.0 94 477-588 12-133 (944)
270 PRK11819 putative ABC transpor 98.7 2E-07 4.3E-12 103.5 13.0 31 236-266 27-57 (556)
271 PRK14964 DNA polymerase III su 98.6 4E-08 8.7E-13 105.1 6.8 93 478-588 10-130 (491)
272 COG1219 ClpX ATP-dependent pro 98.6 1.1E-07 2.3E-12 93.2 8.9 98 242-339 97-203 (408)
273 PRK08058 DNA polymerase III su 98.6 4.2E-07 9.1E-12 93.8 13.8 148 207-387 4-180 (329)
274 PRK08691 DNA polymerase III su 98.6 4.2E-08 9E-13 107.7 6.5 94 477-588 12-133 (709)
275 PRK08181 transposase; Validate 98.6 2.2E-07 4.8E-12 92.4 11.2 101 241-354 105-209 (269)
276 TIGR02633 xylG D-xylose ABC tr 98.6 1.6E-07 3.5E-12 103.0 11.2 32 236-267 21-52 (500)
277 PHA02544 44 clamp loader, smal 98.6 5E-08 1.1E-12 100.5 6.5 94 478-586 18-112 (316)
278 PRK07994 DNA polymerase III su 98.6 4E-08 8.7E-13 108.2 5.7 93 478-588 13-133 (647)
279 TIGR03719 ABC_ABC_ChvD ATP-bin 98.6 5.6E-07 1.2E-11 99.9 14.7 30 237-266 26-55 (552)
280 PRK13341 recombination factor 98.6 4.8E-08 1E-12 109.7 6.0 91 478-588 25-123 (725)
281 PRK07764 DNA polymerase III su 98.6 4.6E-08 9.9E-13 111.2 5.8 94 477-588 11-134 (824)
282 PRK14957 DNA polymerase III su 98.6 6.2E-08 1.3E-12 105.1 6.5 93 478-588 13-133 (546)
283 PRK13409 putative ATPase RIL; 98.6 2.4E-07 5.3E-12 102.8 11.2 29 239-267 96-124 (590)
284 PHA02244 ATPase-like protein 98.6 6.2E-08 1.3E-12 98.8 5.8 74 514-589 118-195 (383)
285 PRK10261 glutathione transport 98.6 4.2E-07 9.1E-12 102.1 13.0 30 237-266 37-66 (623)
286 TIGR00368 Mg chelatase-related 98.6 5.9E-07 1.3E-11 97.1 13.5 47 205-266 189-235 (499)
287 PRK06526 transposase; Provisio 98.6 2.3E-07 5E-12 91.7 9.6 102 240-354 96-201 (254)
288 PRK14955 DNA polymerase III su 98.6 6.3E-08 1.4E-12 102.6 5.9 94 477-588 12-141 (397)
289 TIGR00764 lon_rel lon-related 98.6 1.9E-06 4.1E-11 95.7 17.5 54 201-269 11-64 (608)
290 PRK09183 transposase/IS protei 98.6 3E-07 6.6E-12 91.4 10.1 104 239-354 99-206 (259)
291 PRK09302 circadian clock prote 98.6 2.1E-06 4.5E-11 94.3 17.6 38 238-275 27-68 (509)
292 PRK14951 DNA polymerase III su 98.5 8.7E-08 1.9E-12 105.4 6.4 93 478-588 13-138 (618)
293 PRK14963 DNA polymerase III su 98.5 7.5E-08 1.6E-12 104.3 5.8 94 477-588 10-130 (504)
294 PRK12402 replication factor C 98.5 1.2E-07 2.6E-12 98.5 7.2 97 479-588 13-139 (337)
295 PRK14952 DNA polymerase III su 98.5 9.5E-08 2.1E-12 104.7 6.6 93 478-588 10-132 (584)
296 PF13173 AAA_14: AAA domain 98.5 5.3E-07 1.2E-11 79.7 10.2 70 242-313 2-73 (128)
297 COG1221 PspF Transcriptional r 98.5 2.5E-07 5.5E-12 95.6 9.3 196 203-427 73-310 (403)
298 PRK11608 pspF phage shock prot 98.5 3.7E-07 8.1E-12 94.1 10.4 149 207-383 5-184 (326)
299 PRK15424 propionate catabolism 98.5 2.1E-07 4.6E-12 101.1 8.9 151 205-383 216-406 (538)
300 PRK06645 DNA polymerase III su 98.5 9.3E-08 2E-12 103.2 6.1 94 477-588 17-142 (507)
301 PRK05563 DNA polymerase III su 98.5 1.3E-07 2.9E-12 104.0 7.3 94 477-588 12-133 (559)
302 PRK06305 DNA polymerase III su 98.5 1E-07 2.2E-12 102.2 6.3 94 477-588 13-135 (451)
303 TIGR02974 phageshock_pspF psp 98.5 4.5E-07 9.7E-12 93.4 10.6 145 211-383 2-177 (329)
304 PRK14959 DNA polymerase III su 98.5 1.1E-07 2.3E-12 104.0 6.3 94 477-588 12-133 (624)
305 PRK14970 DNA polymerase III su 98.5 1E-07 2.2E-12 100.3 5.9 96 477-588 13-122 (367)
306 KOG0745 Putative ATP-dependent 98.5 3.3E-07 7.1E-12 93.2 8.8 97 242-338 226-331 (564)
307 PRK14969 DNA polymerase III su 98.5 9.8E-08 2.1E-12 104.3 5.5 93 478-588 13-133 (527)
308 PRK12377 putative replication 98.5 7.8E-07 1.7E-11 87.4 11.2 101 242-354 101-206 (248)
309 COG3829 RocR Transcriptional r 98.5 2.3E-07 4.9E-12 97.7 7.9 152 204-383 241-424 (560)
310 PF13401 AAA_22: AAA domain; P 98.5 7.7E-07 1.7E-11 78.8 10.2 99 241-351 3-125 (131)
311 PRK14965 DNA polymerase III su 98.5 1.6E-07 3.4E-12 103.8 6.9 94 477-588 12-133 (576)
312 TIGR02397 dnaX_nterm DNA polym 98.5 2.3E-07 5E-12 97.2 7.9 94 477-588 10-131 (355)
313 TIGR02903 spore_lon_C ATP-depe 98.5 3.2E-07 6.9E-12 102.1 9.3 62 477-551 150-221 (615)
314 COG1116 TauB ABC-type nitrate/ 98.5 7.6E-07 1.6E-11 85.5 10.5 31 236-266 23-53 (248)
315 COG1484 DnaC DNA replication p 98.5 1.1E-06 2.4E-11 87.0 11.9 72 241-313 104-179 (254)
316 KOG0066 eIF2-interacting prote 98.5 1.6E-06 3.6E-11 88.1 13.1 32 509-540 607-638 (807)
317 PRK05896 DNA polymerase III su 98.5 1.6E-07 3.5E-12 102.0 6.0 93 478-588 13-133 (605)
318 PRK06921 hypothetical protein; 98.5 9.2E-07 2E-11 88.2 10.5 69 241-312 116-188 (266)
319 COG1239 ChlI Mg-chelatase subu 98.5 2.5E-06 5.4E-11 87.6 13.6 160 204-389 13-232 (423)
320 PRK06835 DNA replication prote 98.5 1.9E-06 4.1E-11 88.3 12.7 100 242-353 183-288 (329)
321 PF01695 IstB_IS21: IstB-like 98.4 3.4E-07 7.4E-12 85.7 6.5 102 240-354 45-150 (178)
322 COG0714 MoxR-like ATPases [Gen 98.4 2.2E-07 4.7E-12 96.2 5.6 74 513-590 41-128 (329)
323 PF01637 Arch_ATPase: Archaeal 98.4 1.5E-06 3.2E-11 84.9 11.3 182 211-412 2-229 (234)
324 PRK06871 DNA polymerase III su 98.4 9.7E-06 2.1E-10 82.8 17.4 127 242-388 24-178 (325)
325 PF13177 DNA_pol3_delta2: DNA 98.4 2.6E-06 5.6E-11 78.6 12.1 133 212-375 1-160 (162)
326 PRK14948 DNA polymerase III su 98.4 3.7E-07 7.9E-12 101.3 7.6 94 477-588 12-135 (620)
327 PF12775 AAA_7: P-loop contain 98.4 4.8E-07 1E-11 90.5 7.7 140 240-390 31-194 (272)
328 smart00350 MCM minichromosome 98.4 8.2E-07 1.8E-11 97.1 10.0 133 240-389 234-400 (509)
329 PRK07952 DNA replication prote 98.4 1.5E-06 3.2E-11 85.3 10.7 69 243-313 100-174 (244)
330 PRK14954 DNA polymerase III su 98.4 2.9E-07 6.3E-12 101.6 6.4 94 477-588 12-141 (620)
331 TIGR03420 DnaA_homol_Hda DnaA 98.4 4E-07 8.7E-12 88.9 6.4 65 514-588 37-104 (226)
332 PRK05022 anaerobic nitric oxid 98.4 2.2E-06 4.7E-11 94.0 12.7 150 206-383 185-365 (509)
333 PRK11331 5-methylcytosine-spec 98.4 3.9E-07 8.5E-12 95.5 6.5 75 514-588 193-286 (459)
334 TIGR01817 nifA Nif-specific re 98.4 3.8E-06 8.2E-11 92.9 14.7 126 204-354 192-341 (534)
335 PRK00149 dnaA chromosomal repl 98.4 3.6E-07 7.9E-12 98.6 6.5 72 516-588 149-225 (450)
336 TIGR02329 propionate_PrpR prop 98.4 5.8E-07 1.3E-11 97.8 8.0 126 204-354 208-358 (526)
337 PRK15429 formate hydrogenlyase 98.4 2E-06 4.4E-11 97.8 12.7 150 205-383 373-554 (686)
338 PRK06964 DNA polymerase III su 98.4 2.7E-06 5.8E-11 87.4 12.2 133 240-388 19-203 (342)
339 COG1120 FepC ABC-type cobalami 98.4 9.5E-07 2.1E-11 86.3 8.4 32 236-267 22-53 (258)
340 PRK10820 DNA-binding transcrip 98.4 3.1E-06 6.7E-11 92.9 13.5 152 203-382 199-381 (520)
341 COG2204 AtoC Response regulato 98.4 3.3E-06 7.1E-11 89.1 12.9 150 206-383 139-319 (464)
342 PF07726 AAA_3: ATPase family 98.4 2.3E-08 5E-13 86.3 -2.6 66 517-589 1-77 (131)
343 PRK06647 DNA polymerase III su 98.4 3.9E-07 8.4E-12 100.0 6.2 94 477-588 12-133 (563)
344 PF01078 Mg_chelatase: Magnesi 98.4 6.5E-08 1.4E-12 91.0 -0.0 45 480-539 2-46 (206)
345 TIGR02031 BchD-ChlD magnesium 98.4 2.5E-06 5.4E-11 94.6 12.2 134 243-389 17-174 (589)
346 PRK09862 putative ATP-dependen 98.4 1.6E-06 3.5E-11 93.3 10.3 143 206-379 189-391 (506)
347 KOG1969 DNA replication checkp 98.4 9.1E-07 2E-11 95.4 8.1 67 515-587 326-400 (877)
348 PRK07993 DNA polymerase III su 98.4 1.2E-05 2.7E-10 82.8 16.2 150 241-413 23-200 (334)
349 PRK14950 DNA polymerase III su 98.4 4.1E-07 8.8E-12 101.1 5.5 94 477-588 12-134 (585)
350 TIGR00362 DnaA chromosomal rep 98.3 5.7E-07 1.2E-11 95.9 6.2 72 515-588 136-213 (405)
351 PRK11388 DNA-binding transcrip 98.3 3.9E-06 8.4E-11 94.8 13.3 151 204-382 321-499 (638)
352 PF06068 TIP49: TIP49 C-termin 98.3 5.6E-07 1.2E-11 91.0 5.6 81 481-570 24-106 (398)
353 PRK07952 DNA replication prote 98.3 9.2E-07 2E-11 86.7 6.9 70 516-587 100-175 (244)
354 PRK08769 DNA polymerase III su 98.3 1.8E-05 4E-10 80.6 16.5 152 242-414 26-205 (319)
355 PRK14953 DNA polymerase III su 98.3 5.3E-07 1.2E-11 97.4 5.7 94 477-588 12-133 (486)
356 PRK08181 transposase; Validate 98.3 6.5E-07 1.4E-11 89.1 5.8 72 514-587 105-180 (269)
357 PRK07133 DNA polymerase III su 98.3 5.7E-07 1.2E-11 99.8 5.9 94 477-588 14-132 (725)
358 PRK14088 dnaA chromosomal repl 98.3 7.6E-07 1.6E-11 95.4 6.5 71 516-587 131-207 (440)
359 PRK08939 primosomal protein Dn 98.3 2.1E-06 4.5E-11 87.3 9.3 71 241-313 155-229 (306)
360 PRK06893 DNA replication initi 98.3 6.8E-07 1.5E-11 87.5 5.6 61 516-588 40-105 (229)
361 KOG0062 ATPase component of AB 98.3 3.5E-05 7.6E-10 80.6 18.2 29 236-264 100-128 (582)
362 PRK06851 hypothetical protein; 98.3 3E-05 6.4E-10 80.1 17.7 25 515-539 214-238 (367)
363 PRK09183 transposase/IS protei 98.3 1E-06 2.2E-11 87.7 6.6 73 513-586 100-176 (259)
364 PF00158 Sigma54_activat: Sigm 98.3 3.9E-07 8.6E-12 84.3 3.3 72 515-589 22-108 (168)
365 KOG2035 Replication factor C, 98.3 3.2E-05 6.9E-10 74.8 16.2 175 206-413 11-224 (351)
366 COG1126 GlnQ ABC-type polar am 98.3 1.1E-06 2.5E-11 82.0 6.2 108 236-354 22-196 (240)
367 PRK09111 DNA polymerase III su 98.3 9.3E-07 2E-11 97.5 6.7 98 478-588 21-146 (598)
368 COG1224 TIP49 DNA helicase TIP 98.3 1.1E-06 2.3E-11 87.6 6.4 60 511-571 61-122 (450)
369 PF03215 Rad17: Rad17 cell cyc 98.3 1.6E-05 3.5E-10 86.3 15.9 65 201-273 12-76 (519)
370 cd03216 ABC_Carb_Monos_I This 98.3 2.7E-06 5.8E-11 78.6 8.7 109 236-355 20-143 (163)
371 TIGR02237 recomb_radB DNA repa 98.3 4E-06 8.7E-11 80.8 10.2 78 238-315 8-111 (209)
372 PRK00440 rfc replication facto 98.3 1.3E-06 2.9E-11 89.9 7.3 92 478-588 14-116 (319)
373 PRK08699 DNA polymerase III su 98.3 5.1E-06 1.1E-10 85.2 11.4 131 241-387 20-183 (325)
374 TIGR02902 spore_lonB ATP-depen 98.3 4.4E-07 9.6E-12 99.4 3.8 59 478-549 62-130 (531)
375 COG4619 ABC-type uncharacteriz 98.3 5.8E-06 1.3E-10 74.0 10.0 31 236-266 23-53 (223)
376 COG3604 FhlA Transcriptional r 98.3 6.5E-06 1.4E-10 85.8 11.9 195 204-426 219-456 (550)
377 COG0606 Predicted ATPase with 98.3 4.4E-07 9.6E-12 94.3 3.3 49 204-267 175-223 (490)
378 KOG1514 Origin recognition com 98.3 2.2E-05 4.7E-10 84.9 15.7 176 242-427 422-629 (767)
379 PRK00411 cdc6 cell division co 98.3 2.3E-06 5E-11 91.0 8.6 73 515-587 55-151 (394)
380 PRK06090 DNA polymerase III su 98.3 2.6E-05 5.6E-10 79.4 15.6 127 242-387 25-178 (319)
381 COG1125 OpuBA ABC-type proline 98.3 2.7E-06 5.9E-11 81.3 7.8 31 236-266 21-51 (309)
382 PF14532 Sigma54_activ_2: Sigm 98.3 1.7E-06 3.6E-11 77.7 6.1 105 212-353 2-109 (138)
383 smart00763 AAA_PrkA PrkA AAA d 98.3 2.1E-06 4.5E-11 87.8 7.5 82 209-297 52-144 (361)
384 PF05729 NACHT: NACHT domain 98.2 1.1E-05 2.3E-10 74.4 11.7 140 244-390 2-164 (166)
385 PRK08451 DNA polymerase III su 98.2 1.5E-06 3.3E-11 93.9 6.9 94 477-588 10-131 (535)
386 PRK12377 putative replication 98.2 2.1E-06 4.6E-11 84.3 6.8 70 515-586 101-175 (248)
387 TIGR02928 orc1/cdc6 family rep 98.2 2.6E-06 5.7E-11 89.6 7.8 73 515-587 40-142 (365)
388 PF01695 IstB_IS21: IstB-like 98.2 1.4E-06 3.1E-11 81.5 5.1 70 514-585 46-119 (178)
389 PRK08116 hypothetical protein; 98.2 2.7E-06 5.8E-11 85.1 7.4 69 515-585 114-189 (268)
390 PRK12422 chromosomal replicati 98.2 1.8E-06 4E-11 92.3 6.6 72 516-588 142-216 (445)
391 PF13173 AAA_14: AAA domain 98.2 3E-06 6.5E-11 74.9 6.9 69 516-586 3-73 (128)
392 PRK13531 regulatory ATPase Rav 98.2 7.6E-07 1.6E-11 94.1 3.3 75 514-589 38-122 (498)
393 PRK06526 transposase; Provisio 98.2 1.2E-06 2.7E-11 86.6 4.6 72 514-587 97-172 (254)
394 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 5.1E-06 1.1E-10 80.9 8.6 58 289-357 145-202 (254)
395 cd01120 RecA-like_NTPases RecA 98.2 6.7E-06 1.5E-10 75.3 9.2 72 245-316 2-100 (165)
396 PRK08903 DnaA regulatory inact 98.2 2.7E-06 5.9E-11 83.2 6.8 62 513-588 40-104 (227)
397 COG1136 SalX ABC-type antimicr 98.2 9.7E-06 2.1E-10 77.7 10.2 31 236-266 25-55 (226)
398 COG3842 PotA ABC-type spermidi 98.2 3.2E-06 6.9E-11 86.4 7.3 109 236-354 25-197 (352)
399 PRK08939 primosomal protein Dn 98.2 2.7E-06 5.8E-11 86.6 6.7 71 514-586 155-229 (306)
400 cd03222 ABC_RNaseL_inhibitor T 98.2 4.9E-06 1.1E-10 77.7 7.9 108 237-354 20-132 (177)
401 COG1220 HslU ATP-dependent pro 98.2 2.1E-06 4.6E-11 84.9 5.6 57 514-570 49-107 (444)
402 PRK13407 bchI magnesium chelat 98.2 3.3E-07 7.1E-12 93.9 -0.0 49 477-539 4-53 (334)
403 CHL00081 chlI Mg-protoporyphyr 98.2 7.8E-07 1.7E-11 91.3 2.4 51 476-539 12-62 (350)
404 COG3839 MalK ABC-type sugar tr 98.2 5.6E-06 1.2E-10 84.2 8.5 109 236-354 23-194 (338)
405 COG2884 FtsE Predicted ATPase 98.2 1.2E-05 2.6E-10 73.6 9.6 31 236-266 22-52 (223)
406 TIGR00764 lon_rel lon-related 98.2 1.3E-06 2.9E-11 96.9 4.3 89 473-576 10-108 (608)
407 PRK14086 dnaA chromosomal repl 98.2 2.6E-06 5.7E-11 92.9 6.4 71 517-588 316-391 (617)
408 KOG2227 Pre-initiation complex 98.2 4.8E-05 1E-09 78.8 15.1 187 208-413 150-364 (529)
409 PF05673 DUF815: Protein of un 98.2 2.6E-06 5.7E-11 82.0 5.7 92 474-583 20-115 (249)
410 cd03228 ABCC_MRP_Like The MRP 98.2 6.4E-06 1.4E-10 76.8 8.2 110 236-357 22-158 (171)
411 PRK14971 DNA polymerase III su 98.2 3.2E-06 6.9E-11 93.9 7.1 93 478-588 14-135 (614)
412 PF06068 TIP49: TIP49 C-termin 98.2 5.9E-06 1.3E-10 83.8 8.2 72 208-287 24-97 (398)
413 cd03214 ABC_Iron-Siderophores_ 98.1 5.3E-06 1.2E-10 78.0 7.4 110 236-355 19-159 (180)
414 PF13401 AAA_22: AAA domain; P 98.1 4.9E-06 1.1E-10 73.6 6.6 72 515-586 4-99 (131)
415 PF12774 AAA_6: Hydrolytic ATP 98.1 4.7E-05 1E-09 74.1 13.7 128 242-386 32-177 (231)
416 COG5245 DYN1 Dynein, heavy cha 98.1 8.9E-06 1.9E-10 93.2 9.5 334 238-586 1490-1906(3164)
417 KOG1942 DNA helicase, TBP-inte 98.1 0.00011 2.4E-09 71.5 15.7 49 209-268 39-90 (456)
418 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 7E-06 1.5E-10 74.1 7.3 75 236-312 20-99 (144)
419 TIGR02012 tigrfam_recA protein 98.1 1.9E-05 4.2E-10 80.2 11.2 115 238-352 51-190 (321)
420 COG1124 DppF ABC-type dipeptid 98.1 1.1E-05 2.3E-10 77.1 8.6 109 236-354 27-202 (252)
421 PLN03210 Resistant to P. syrin 98.1 5.4E-05 1.2E-09 91.2 16.7 176 204-411 180-389 (1153)
422 smart00763 AAA_PrkA PrkA AAA d 98.1 3.1E-06 6.8E-11 86.5 5.2 83 482-572 52-146 (361)
423 PRK06921 hypothetical protein; 98.1 3.6E-06 7.8E-11 84.0 5.5 69 514-585 116-188 (266)
424 COG1118 CysA ABC-type sulfate/ 98.1 1.1E-05 2.4E-10 79.3 8.6 109 236-354 22-198 (345)
425 KOG3595 Dyneins, heavy chain [ 98.1 0.00017 3.7E-09 87.7 20.6 323 242-582 127-531 (1395)
426 TIGR00678 holB DNA polymerase 98.1 6.9E-06 1.5E-10 77.8 7.1 70 514-588 13-110 (188)
427 PTZ00112 origin recognition co 98.1 8.5E-06 1.8E-10 90.6 8.4 72 517-588 783-883 (1164)
428 cd03246 ABCC_Protease_Secretio 98.1 1.6E-05 3.4E-10 74.3 9.2 107 237-354 23-156 (173)
429 COG1484 DnaC DNA replication p 98.1 7.1E-06 1.5E-10 81.3 7.1 70 514-585 104-178 (254)
430 PRK08084 DNA replication initi 98.1 5E-06 1.1E-10 81.7 5.9 63 516-588 46-111 (235)
431 PF00931 NB-ARC: NB-ARC domain 98.1 7.8E-05 1.7E-09 75.5 14.8 168 214-411 2-196 (287)
432 cd00983 recA RecA is a bacter 98.1 3.2E-05 6.9E-10 78.7 11.6 115 238-352 51-190 (325)
433 cd00267 ABC_ATPase ABC (ATP-bi 98.1 8.3E-06 1.8E-10 74.8 6.7 78 236-313 19-110 (157)
434 TIGR00602 rad24 checkpoint pro 98.1 3.1E-06 6.7E-11 93.5 4.4 100 479-587 82-208 (637)
435 cd03238 ABC_UvrA The excision 98.1 2.6E-05 5.6E-10 72.8 9.9 109 236-355 15-150 (176)
436 KOG1051 Chaperone HSP104 and r 98.1 2.9E-05 6.2E-10 87.7 11.9 129 208-354 562-711 (898)
437 COG0470 HolB ATPase involved i 98.0 7.2E-06 1.6E-10 84.7 6.7 70 517-588 26-123 (325)
438 COG1122 CbiO ABC-type cobalt t 98.0 1.1E-06 2.5E-11 85.5 0.5 33 236-268 24-56 (235)
439 COG1245 Predicted ATPase, RNas 98.0 2.5E-05 5.4E-10 80.5 10.1 28 240-267 98-125 (591)
440 cd03230 ABC_DR_subfamily_A Thi 98.0 1.7E-05 3.7E-10 74.0 8.3 109 236-355 20-156 (173)
441 COG4608 AppF ABC-type oligopep 98.0 1.4E-05 3.1E-10 77.8 7.9 109 236-354 33-170 (268)
442 PRK09361 radB DNA repair and r 98.0 3.9E-05 8.5E-10 74.9 10.8 39 238-276 19-60 (225)
443 COG1119 ModF ABC-type molybden 98.0 2.8E-05 6.1E-10 74.4 9.2 31 236-266 51-81 (257)
444 PRK06835 DNA replication prote 98.0 1.4E-05 3E-10 82.0 7.6 70 515-586 183-258 (329)
445 PRK05564 DNA polymerase III su 98.0 6.8E-06 1.5E-10 84.5 5.3 94 479-588 2-107 (313)
446 cd03283 ABC_MutS-like MutS-lik 98.0 1.3E-05 2.7E-10 76.6 6.8 76 508-584 18-115 (199)
447 PRK08727 hypothetical protein; 98.0 1.5E-05 3.3E-10 78.1 7.4 62 516-587 42-106 (233)
448 PRK08533 flagellar accessory p 98.0 5.9E-05 1.3E-09 73.7 11.5 77 238-314 20-130 (230)
449 cd03247 ABCC_cytochrome_bd The 98.0 3.9E-05 8.4E-10 72.0 9.8 108 236-355 22-158 (178)
450 cd01120 RecA-like_NTPases RecA 98.0 2E-05 4.4E-10 72.1 7.7 70 518-587 2-98 (165)
451 cd03229 ABC_Class3 This class 98.0 1.5E-05 3.2E-10 74.8 6.9 110 236-355 20-162 (178)
452 TIGR02442 Cob-chelat-sub cobal 98.0 2.3E-06 4.9E-11 96.0 1.5 46 480-539 3-49 (633)
453 KOG0990 Replication factor C, 98.0 3.6E-05 7.8E-10 76.0 9.5 156 203-390 36-204 (360)
454 PF03152 UFD1: Ubiquitin fusio 98.0 0.00012 2.7E-09 67.3 12.4 134 40-178 24-161 (176)
455 COG4525 TauB ABC-type taurine 98.0 6E-05 1.3E-09 69.4 10.1 31 236-266 25-55 (259)
456 PRK05642 DNA replication initi 98.0 1.9E-05 4.1E-10 77.5 7.4 62 516-587 46-110 (234)
457 PRK08118 topology modulation p 97.9 1.9E-05 4.1E-10 73.2 6.9 54 517-570 3-56 (167)
458 COG1618 Predicted nucleotide k 97.9 0.00012 2.6E-09 65.4 11.5 28 240-267 3-30 (179)
459 TIGR00368 Mg chelatase-related 97.9 3.8E-06 8.3E-11 90.8 2.5 46 479-539 190-235 (499)
460 PRK14087 dnaA chromosomal repl 97.9 1.8E-05 3.9E-10 85.0 7.6 70 516-587 142-219 (450)
461 PRK06620 hypothetical protein; 97.9 1.1E-05 2.3E-10 78.0 5.1 29 516-544 45-73 (214)
462 KOG0991 Replication factor C, 97.9 1.1E-05 2.5E-10 75.8 5.0 68 517-587 50-126 (333)
463 cd03223 ABCD_peroxisomal_ALDP 97.9 4.4E-05 9.5E-10 70.7 8.6 77 236-312 21-120 (166)
464 PRK09376 rho transcription ter 97.9 2.4E-05 5.3E-10 80.6 7.4 76 514-589 168-271 (416)
465 COG1120 FepC ABC-type cobalami 97.9 1.5E-05 3.3E-10 77.9 5.6 30 511-540 24-53 (258)
466 COG1117 PstB ABC-type phosphat 97.9 2.9E-05 6.2E-10 72.6 6.9 31 236-266 27-57 (253)
467 TIGR02030 BchI-ChlI magnesium 97.9 3.8E-06 8.2E-11 86.3 1.3 46 480-539 3-49 (337)
468 TIGR02915 PEP_resp_reg putativ 97.9 7.1E-05 1.5E-09 81.0 11.3 146 207-383 138-317 (445)
469 PRK11823 DNA repair protein Ra 97.9 8.4E-05 1.8E-09 79.8 11.4 79 238-316 76-171 (446)
470 PF13207 AAA_17: AAA domain; P 97.9 1.2E-05 2.6E-10 70.2 4.0 31 518-548 2-32 (121)
471 PRK00131 aroK shikimate kinase 97.9 4.7E-05 1E-09 70.9 8.1 42 514-557 3-44 (175)
472 cd03213 ABCG_EPDR ABCG transpo 97.9 6.6E-05 1.4E-09 71.5 9.2 30 237-266 30-59 (194)
473 COG1131 CcmA ABC-type multidru 97.9 4E-05 8.7E-10 77.7 8.1 31 237-267 26-56 (293)
474 PF12774 AAA_6: Hydrolytic ATP 97.9 2.4E-05 5.3E-10 76.1 6.2 69 514-589 31-99 (231)
475 PF13191 AAA_16: AAA ATPase do 97.9 3.7E-05 8E-10 72.2 7.3 59 210-278 2-63 (185)
476 cd01123 Rad51_DMC1_radA Rad51_ 97.9 6.8E-05 1.5E-09 73.6 9.4 115 238-352 15-168 (235)
477 cd01121 Sms Sms (bacterial rad 97.8 7.8E-05 1.7E-09 77.9 10.2 79 238-316 78-173 (372)
478 cd03280 ABC_MutS2 MutS2 homolo 97.8 4.7E-05 1E-09 72.9 8.0 75 511-585 23-119 (200)
479 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 3.8E-05 8.2E-10 74.5 7.4 31 236-266 24-54 (218)
480 PRK07261 topology modulation p 97.8 3.9E-05 8.5E-10 71.4 7.1 43 517-559 2-44 (171)
481 PF03969 AFG1_ATPase: AFG1-lik 97.8 7.9E-05 1.7E-09 77.4 10.0 141 239-402 59-206 (362)
482 cd03222 ABC_RNaseL_inhibitor T 97.8 3.7E-05 8.1E-10 71.8 6.8 75 511-585 21-100 (177)
483 cd03216 ABC_Carb_Monos_I This 97.8 3.4E-05 7.3E-10 71.3 6.4 76 510-585 21-111 (163)
484 cd01131 PilT Pilus retraction 97.8 3.3E-05 7.2E-10 73.7 6.6 68 517-584 3-84 (198)
485 PRK07471 DNA polymerase III su 97.8 1.9E-05 4E-10 82.4 5.2 51 477-539 15-65 (365)
486 PTZ00111 DNA replication licen 97.8 8.6E-05 1.9E-09 84.1 10.6 129 239-384 489-652 (915)
487 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 3.4E-05 7.3E-10 69.7 6.1 75 510-585 21-99 (144)
488 PRK11650 ugpC glycerol-3-phosp 97.8 4.9E-05 1.1E-09 79.3 8.2 31 236-266 24-54 (356)
489 PF00308 Bac_DnaA: Bacterial d 97.8 2.4E-05 5.3E-10 75.8 5.5 71 516-588 35-111 (219)
490 KOG2680 DNA helicase TIP49, TB 97.8 0.00033 7.1E-09 68.5 12.8 39 240-278 64-104 (454)
491 PF13671 AAA_33: AAA domain; P 97.8 5.5E-05 1.2E-09 67.9 7.3 61 518-581 2-76 (143)
492 COG1127 Ttg2A ABC-type transpo 97.8 5.1E-05 1.1E-09 72.3 7.1 30 237-266 29-58 (263)
493 cd03283 ABC_MutS-like MutS-lik 97.8 0.0001 2.2E-09 70.4 9.3 77 235-312 18-116 (199)
494 PRK06067 flagellar accessory p 97.8 0.00022 4.8E-09 70.0 11.9 38 238-275 21-61 (234)
495 PRK09354 recA recombinase A; P 97.8 0.00014 3.1E-09 74.6 10.7 114 238-351 56-194 (349)
496 cd01393 recA_like RecA is a b 97.8 0.00012 2.7E-09 71.4 10.0 115 238-352 15-167 (226)
497 cd01394 radB RadB. The archaea 97.8 0.00014 3.1E-09 70.6 10.3 39 238-276 15-56 (218)
498 PHA00729 NTP-binding motif con 97.8 4.1E-05 8.8E-10 73.5 6.3 24 517-540 19-42 (226)
499 PF00910 RNA_helicase: RNA hel 97.8 7.9E-05 1.7E-09 63.6 7.4 23 245-267 1-23 (107)
500 PRK11432 fbpC ferric transport 97.8 5E-05 1.1E-09 79.0 7.5 31 236-266 26-56 (351)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-94 Score=751.40 Aligned_cols=540 Identities=61% Similarity=1.015 Sum_probs=500.9
Q ss_pred CcchhHHhhhcCCCCeEEEccccCCCCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCCCCCeEEeCHHHH
Q 007764 15 RDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVR 94 (590)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r 94 (590)
.+.+++|+..+.-+|.+.|.. .+++.+.+.+++..|..+++..| |.+.|+++...++.+..++. ....+.+....|
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r 77 (693)
T KOG0730|consen 2 ESPSTAILPVKCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSR 77 (693)
T ss_pred CcccccccccccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheec
Confidence 367899999988888999987 45556699999999999999999 99999876666655444444 778899999999
Q ss_pred hhccccCCCeEEEEEccccCCCceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEEEeC
Q 007764 95 SNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD 174 (590)
Q Consensus 95 ~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~ 174 (590)
.++.++.|+.|.++.++.+..+..+.+.|+..+..++....++.+.+.|+...++++..|+++ .....+.|+++...
T Consensus 78 ~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 154 (693)
T KOG0730|consen 78 SNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELD 154 (693)
T ss_pred cchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccc
Confidence 999999999999999888888888999999988888888888899999999999999889887 44456678888887
Q ss_pred CCCeEEecCCceEEecCCCccccccccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCc
Q 007764 175 PPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSG 254 (590)
Q Consensus 175 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtG 254 (590)
|.. ++.++|.+.+.+++..+.... ..+++ .++||+..++..+++++.+|+++|.++..+|+++++++|+|||||||
T Consensus 155 ~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~G 230 (693)
T KOG0730|consen 155 PSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTG 230 (693)
T ss_pred cch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCC
Confidence 766 788899998888887765444 46778 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcC-CeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 255 KTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 255 KTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
||.+++++|++.++.++.+++++++.++.|++++.+|..|+++...+ |+++||||+|.+++++....+ +++|+..||+
T Consensus 231 kt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqll 309 (693)
T KOG0730|consen 231 KTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLL 309 (693)
T ss_pred hHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999999987666 8899999999
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~ 413 (590)
++||++....+++++++||+|+.||++++| |||++++++..|+..+|.+|++.+++.+.+.++.++..+|..+|||+|+
T Consensus 310 tL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGa 388 (693)
T KOG0730|consen 310 TLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGA 388 (693)
T ss_pred HHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccccccccCCcccccccccchhhhcc
Q 007764 414 DLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKREL 493 (590)
Q Consensus 414 dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~~~~iggl~~vk~~L 493 (590)
|+.++|++|++.+.++ +.++|..|+..++|+++|+..+++|+++|+||||++++|++|
T Consensus 389 DL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 389 DLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred HHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 9999999999988765 567899999999999999999999999999999999999999
Q ss_pred cceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHhhC
Q 007764 494 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 573 (590)
Q Consensus 494 ~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~ 573 (590)
++.|+||++|++.|.++|++|++|||||||||||||++||++|+++++||++|+||||++||||+||++||++|++||+.
T Consensus 447 q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 447 QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV 526 (693)
T ss_pred HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEccccccccc
Q 007764 574 APCVLFFDELDSIATQ 589 (590)
Q Consensus 574 ~p~vlf~DEid~l~~~ 589 (590)
+||||||||||+++.+
T Consensus 527 aP~IiFfDEiDsi~~~ 542 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGS 542 (693)
T ss_pred CCeEEehhhHHhHhhc
Confidence 9999999999999864
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-90 Score=710.16 Aligned_cols=386 Identities=53% Similarity=0.927 Sum_probs=363.2
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
++++|.+|||+++++.+|.+++.. ++||+.|.++|+.|++|||||||||||||+||+++|++++.+|+.|+++++.+.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 467999999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccC----CeEEEEeecCCCCCCc
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPNSID 358 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~----~~v~vI~~tn~~~~ld 358 (590)
.|++|++++++|++|....|||+||||||++.++|+....++++|++.||++.||++... ..|+||||||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998754 5799999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc---
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID--- 435 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~--- 435 (590)
|+|+|.|||+++|.+..|++.+|.+||+..++++.+..+.++..||..|+||+|+|+.+||.+|+.-++++..+...
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988655211
Q ss_pred -------------cchhh-----------------------------hhHHHhhhhhccHHHHHhhhcCCCCCccccccc
Q 007764 436 -------------LEDET-----------------------------IDAEILNSMAVTDEHFKTALGTSNPSALRETVV 473 (590)
Q Consensus 436 -------------~~~~~-----------------------------i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~ 473 (590)
.+++. .+.+....+.+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 00000 011223345688999999999999999999999
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
.+|+|+|+|||++++++.+|..+|.||+++++.|+++|+.++.|+||+||||||||+||||+|+|+++|||+|+||||++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
|||||||++||.+|++||.++||||||||+|+|.|.
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~ 619 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPR 619 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcc
Confidence 999999999999999999999999999999999874
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.5e-80 Score=699.53 Aligned_cols=551 Identities=53% Similarity=0.890 Sum_probs=491.6
Q ss_pred EEEccccC-C-CCcEEEECHHHHHhcCCCCCCEEEEe-ccCCceEEEEEEc--CCCCCCCeEEeCHHHHhhccccCCCeE
Q 007764 31 LVVDEAIN-D-DNSVVVLHPDTMEKLQFFRGDTILIK-GKKRKDTVCIALA--DDTCEEPKIRMNKVVRSNLRVRLGDVV 105 (590)
Q Consensus 31 ~~v~~~~~-~-~~~~v~~~~~~~~~l~~~~g~~v~i~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~~~~v 105 (590)
++|.++.. + ++++++|+|++|++||+.+||+|.|. |++ .+++.+|+ +++.+.+.|+|++.+|.|+|+++||.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (733)
T TIGR01243 4 LRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDTV 81 (733)
T ss_pred EEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCeE
Confidence 56777744 3 88999999999999999999999999 554 45677776 457889999999999999999999999
Q ss_pred EEEEccccCCCceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEEEeCCCCeEEecCCc
Q 007764 106 SVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDT 185 (590)
Q Consensus 106 ~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~t 185 (590)
+|+++. ++.+.+|.+.|..... .+..+..+++.+|. .+++..|+.+.+......+.|+|+++.|.+.+.++..|
T Consensus 82 ~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~t 155 (733)
T TIGR01243 82 TVERAE-VKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEAT 155 (733)
T ss_pred EEeecC-CCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCCc
Confidence 999954 7789999988864321 12344567777775 47899999987765444578999999999999899999
Q ss_pred eEEecCCCccccccccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 007764 186 EIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE 265 (590)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~ 265 (590)
.+.+...+..+......+.++|+||+|++++++.|++++.+|+.+|++++++|+.+++++|||||||||||++++++|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 156 EVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred eEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 88776555433222345789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeE
Q 007764 266 TGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 345 (590)
Q Consensus 266 ~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (590)
++.+++.++++++.+++.|+.+..++.+|+.+....|++|||||+|.++++++...++.+.+++++|+++++++..+..+
T Consensus 236 ~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 236 AGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred hCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 99999999999999999999999999999999999999999999999999988777788889999999999999888899
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQ 425 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~ 425 (590)
++|++||+++.+|++++|++||+..++++.|+.++|.+||+.+.+.+.+..+.++..++..++||+++|+..+|.++++.
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~ 395 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMA 395 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHhccc--ccccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccccccccCCcccccccccchhhhcccceeecccCC
Q 007764 426 CIREKMD--VIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEH 503 (590)
Q Consensus 426 ~~~~~~~--~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~ 503 (590)
++++... ........+..+......++.++|..++..+.|+.+++...+.|.++|++++|++.+|+.|++.+.||+.+
T Consensus 396 al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~ 475 (733)
T TIGR01243 396 ALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKH 475 (733)
T ss_pred HHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhC
Confidence 9887654 22222333444444566789999999999999999999989999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccc
Q 007764 504 PEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 583 (590)
Q Consensus 504 ~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEi 583 (590)
++.+.++++++++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++|++++++|+.|+..+|||||||||
T Consensus 476 ~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEi 555 (733)
T TIGR01243 476 PEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEI 555 (733)
T ss_pred HHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 007764 584 DSIATQ 589 (590)
Q Consensus 584 d~l~~~ 589 (590)
|+|++.
T Consensus 556 d~l~~~ 561 (733)
T TIGR01243 556 DAIAPA 561 (733)
T ss_pred hhhhcc
Confidence 999763
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-65 Score=536.57 Aligned_cols=446 Identities=34% Similarity=0.559 Sum_probs=350.9
Q ss_pred hhhHHHHhhHHhhhcCCcccCCcEEEEee------------------cceeEEEEEEEeCCCC---eEEecCCceEEecC
Q 007764 133 GNLFDAYLKPYFTEAYRPVRKGDLFLVRG------------------GMRSVEFKVIETDPPE---YCVVAPDTEIFCEG 191 (590)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~------------------~~~~~~~~v~~~~~~~---~~~~~~~t~~~~~~ 191 (590)
.+..+..++.||. ..|.++.||+|++.. ....++|+|++.+|.. +++..+.|.++..+
T Consensus 303 ~~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~ 381 (953)
T KOG0736|consen 303 AGNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVG 381 (953)
T ss_pred hhHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEcc
Confidence 3567778999997 678899999998732 2346789999999853 44556668887765
Q ss_pred CCccccc--cc-cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 007764 192 EPVRRED--EN-RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA 268 (590)
Q Consensus 192 ~~~~~~~--~~-~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~ 268 (590)
....+.. .. ...-.++-..-+.+..+..+..++.- -+.|. ..++.-...+||+|+||||||++++++|.++|.
T Consensus 382 ~~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p-~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~ 457 (953)
T KOG0736|consen 382 ATSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSP-QKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGL 457 (953)
T ss_pred ccccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCc-ccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCC
Confidence 4443310 00 00011233344555555544444432 22222 122344568999999999999999999999999
Q ss_pred eEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhh---ccccCCeE
Q 007764 269 FFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD---GLKSRAHV 345 (590)
Q Consensus 269 ~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---~~~~~~~v 345 (590)
+++.++|.++.+...+.++..+...|+.++...|+|||+-++|.+.-+.+. ..+.++...+..++. .......+
T Consensus 458 h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ 534 (953)
T KOG0736|consen 458 HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPV 534 (953)
T ss_pred ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCce
Confidence 999999999999999999999999999999999999999999999866544 233444444433333 34467789
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQ 425 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~ 425 (590)
++|++++..+.+++.+++ -|..+|.++.|++++|.+||+.+.....+..++.+..++..+.||+-+++.++.......
T Consensus 535 ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 535 IVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLA 612 (953)
T ss_pred EEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHH
Confidence 999999999999999998 788899999999999999999999999999999999999999999999999988876333
Q ss_pred HHHhccccc---ccchhhhhHHHhhhhhccHHHHHhhhcCCCCCccc-ccccccCCcccccccccchhhhcccceeeccc
Q 007764 426 CIREKMDVI---DLEDETIDAEILNSMAVTDEHFKTALGTSNPSALR-ETVVEVPNVNWEDIGGLENVKRELQETVQYPV 501 (590)
Q Consensus 426 ~~~~~~~~~---~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~-~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~ 501 (590)
+..+..... .+.+..-.........++++||.+++...+.+... -...++|+|+|+||||++++|.++.+.|+.|+
T Consensus 613 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL 692 (953)
T KOG0736|consen 613 AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPL 692 (953)
T ss_pred HHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcc
Confidence 322211111 11111111112345778999999999876544322 24577999999999999999999999999999
Q ss_pred CChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEc
Q 007764 502 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFD 581 (590)
Q Consensus 502 ~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~D 581 (590)
+|+++|.. |++++.|+|||||||||||++|||+|+||..+|++||||||++||||+||+|||++|++||+++|||||||
T Consensus 693 ~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 693 KHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred cChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEec
Confidence 99999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q 007764 582 ELDSIATQ 589 (590)
Q Consensus 582 Eid~l~~~ 589 (590)
|+|||||+
T Consensus 772 ELDSlAP~ 779 (953)
T KOG0736|consen 772 ELDSLAPN 779 (953)
T ss_pred cccccCcc
Confidence 99999995
No 5
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-63 Score=499.78 Aligned_cols=534 Identities=29% Similarity=0.455 Sum_probs=404.2
Q ss_pred eEEEccccCC---CCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCCCCCeEEeCHHHHhhccccCCCeEE
Q 007764 30 RLVVDEAIND---DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVS 106 (590)
Q Consensus 30 ~~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~ 106 (590)
.++|.++... -...+++||...++-++ ..+... ..++.......+++|.|.++..+|+|+++++|+.|.
T Consensus 10 ~~~v~k~ps~e~altn~a~v~~~DF~~~~~-----~~vd~~---~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~ 81 (744)
T KOG0741|consen 10 AFQVTKCPSNELALTNCAYVSPSDFRQFQV-----IIVDNF---HYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVE 81 (744)
T ss_pred eeeeecCCchhhhccCcceeCcccccccee-----eEEeee---eEEEEeeccCCCCCceeccchhhhhhhhcccCceeE
Confidence 4566555332 24568888877755432 223221 356666677889999999999999999999999999
Q ss_pred EEEcccc---CCCceEEec----ccc-ccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecc-eeEEEEEEEeC---
Q 007764 107 VHQCADV---KYGKRVHIL----PVD-DTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGM-RSVEFKVIETD--- 174 (590)
Q Consensus 107 i~~~~~~---~~a~~v~~~----~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~--- 174 (590)
|+++... .+-..+.+. ... .+...++.+.........|. ..++.+|+.+.+...+ ..+.++|.+++
T Consensus 82 V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~--~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~D 159 (744)
T KOG0741|consen 82 VKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN--SQAFSVGQQLVFEFNGNKLLGLKVKDIEAFD 159 (744)
T ss_pred EEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc--CcccCCccEEEEEecCceEeeeEEEEEeeec
Confidence 9976421 111222221 111 11112222322222222332 3568899988775543 55667776654
Q ss_pred C--------------CCeEEecCCceEEecCCCcc----------ccccccC--CCCCccc--ccchHHHHHHH-HHHHH
Q 007764 175 P--------------PEYCVVAPDTEIFCEGEPVR----------REDENRL--DEVGYDD--VGGVRKQMAQI-RELVE 225 (590)
Q Consensus 175 ~--------------~~~~~~~~~t~~~~~~~~~~----------~~~~~~~--~~~~~~~--i~G~~~~~~~l-~~~~~ 225 (590)
| ..++++.++|.|.+.....+ +.....+ ++..|++ |||++++...| |+++.
T Consensus 160 ~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFA 239 (744)
T KOG0741|consen 160 PGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFA 239 (744)
T ss_pred cccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHHH
Confidence 2 13588899998855322211 1111111 3444544 99999999998 88999
Q ss_pred cccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-EEEEechhhhhhccchhHHHHHHHHHHHHhc----
Q 007764 226 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-FFCINGPEIMSKLAGESESNLRKAFEEAEKN---- 300 (590)
Q Consensus 226 ~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~-~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~---- 300 (590)
.....|++.+++|+++-+++|||||||||||.+||.|...+++. ...|||++++++|+|++|+++|.+|.+|+..
T Consensus 240 sRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 240 SRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred hhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999865 6889999999999999999999999999763
Q ss_pred ----CCeEEEEcccccccCCCCCCc--hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEec
Q 007764 301 ----APSIIFIDEIDSIAPKREKTH--GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIG 374 (590)
Q Consensus 301 ----~p~iL~iDEid~l~~~~~~~~--~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~ 374 (590)
.-+||++||||++|.+|+... +.+...+++||++.||+..+-++++|||+||+.+.||+||.|||||..++++.
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIs 399 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEIS 399 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEe
Confidence 247999999999999998643 56889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC----CCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhh
Q 007764 375 VPDEVGRLEVLRIHTKNMK----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMA 450 (590)
Q Consensus 375 ~P~~~~r~~Il~~~~~~~~----~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 450 (590)
.||+..|++||++|+++|. +.+++|+.++|..|.+|+|++++.+++.|...++.+....- .....+......+.
T Consensus 400 LPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~lk 477 (744)
T KOG0741|consen 400 LPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENLK 477 (744)
T ss_pred CCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhhee
Confidence 9999999999999998886 56899999999999999999999999999998888776533 12334455567789
Q ss_pred ccHHHHHhhhcCCCCCcccc-----cccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCC
Q 007764 451 VTDEHFKTALGTSNPSALRE-----TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 525 (590)
Q Consensus 451 v~~~~~~~al~~~~p~~~~~-----~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppG 525 (590)
++..||..|+.+++|+.... ..+.-.-+.|... +.+.+.....+....+.-..++..++||.||||
T Consensus 478 V~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~---------v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~ 548 (744)
T KOG0741|consen 478 VTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP---------VTRILDDGKLLVQQVKNSERSPLVSVLLEGPPG 548 (744)
T ss_pred ecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc---------HHHHHhhHHHHHHHhhccccCcceEEEEecCCC
Confidence 99999999999999976431 1112223444331 111111111222233333556777899999999
Q ss_pred CChhHHHHHHHHHhCCcEEEEeccchhhhhccchHH----HHHHHHHHHhhCCCeEEEEccccccc
Q 007764 526 CGKTLLAKAIANECQANFISVKGPELLTMWFGESEA----NVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 526 tGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~----~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
+|||+||..+|..+.+|||++-.||-+ +|.||. +|+++|+.|++++-+||++|+||.|.
T Consensus 549 sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 549 SGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLL 611 (744)
T ss_pred CChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhh
Confidence 999999999999999999999999875 677763 79999999999999999999999885
No 6
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-53 Score=442.69 Aligned_cols=337 Identities=34% Similarity=0.538 Sum_probs=289.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~----~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
-...+|||+||+|||||.|+++++.++. +++..++|+.+...........++.+|..+....|+|+++|++|.|+.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3456899999999999999999999864 567889999998887888888999999999999999999999999987
Q ss_pred CCCCC---chhHHHHHHHHHHHhhhcccc-CCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC
Q 007764 316 KREKT---HGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (590)
Q Consensus 316 ~~~~~---~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~ 391 (590)
..+.. .+....+....+.+.++.+.. +..+.+|++.+....+++.|..+++|..++.++.|+..+|.+||+..+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 32221 223334444444455544444 44578999999999999999999999999999999999999999977654
Q ss_pred CC-CCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccc
Q 007764 392 MK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRE 470 (590)
Q Consensus 392 ~~-~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~ 470 (590)
-. .....|++-++..|+||...|+..++.+|...++.+.... ....++.++|.++++...|.++|.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ 655 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRG 655 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhh
Confidence 33 2223456669999999999999999999998887544321 122688999999999999999998
Q ss_pred ccccc-CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEecc
Q 007764 471 TVVEV-PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549 (590)
Q Consensus 471 ~~~~~-~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~ 549 (590)
..+.- .+++|+|+||+.++|+.|.++++||.+|+..|...+++.+.|+|||||||||||.||.++|..++++||+||||
T Consensus 656 ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 656 IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 65544 45999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 550 el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
|+++||+|.||++||++|.+|+.++||||||||+||+||.
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPk 775 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPK 775 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcc
Confidence 9999999999999999999999999999999999999984
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-53 Score=412.34 Aligned_cols=247 Identities=51% Similarity=0.856 Sum_probs=230.8
Q ss_pred ccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 007764 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (590)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~ 279 (590)
++.++++|+||||+++|+++|+|.+++|+.+|++|..+||.||+|||||||||||||.||+|+|++.++.|+.+.++++.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHH---HHHHHHHhhhccccCCeEEEEeecCCCCC
Q 007764 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR---IVSQLLTLMDGLKSRAHVIVIGATNRPNS 356 (590)
Q Consensus 280 ~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~---v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ 356 (590)
.+|.|+....+|++|+.|+.+.||||||||||++..+|-...+.-++. .+-+|++.|||+..+.+|-||+|||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 999999999999999999999999999999999999886654444444 44567778899999999999999999999
Q ss_pred CchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Q 007764 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (590)
Q Consensus 357 ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (590)
|||||.||||||+.|+||.|+.+.|.+||++|+++|.+.+++|++.+|..+.|++|+|+.++|.+|.+.++|+..
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R----- 377 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR----- 377 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred chhhhhHHHhhhhhccHHHHHhhhcCC
Q 007764 437 EDETIDAEILNSMAVTDEHFKTALGTS 463 (590)
Q Consensus 437 ~~~~i~~~~~~~~~v~~~~~~~al~~~ 463 (590)
..++++||.+|...+
T Consensus 378 ------------~~Vt~~DF~~Av~KV 392 (406)
T COG1222 378 ------------DEVTMEDFLKAVEKV 392 (406)
T ss_pred ------------CeecHHHHHHHHHHH
Confidence 457888998887654
No 8
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-49 Score=430.41 Aligned_cols=349 Identities=60% Similarity=0.970 Sum_probs=325.4
Q ss_pred cccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEE
Q 007764 226 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 305 (590)
Q Consensus 226 ~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL 305 (590)
+|+.+++.++.+++.++.+++++||||+|||+++++++.+ +..+..+++++..+++.++.+...+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678899999999999999999999999999999999999 666688999999999999999999999999999999999
Q ss_pred EEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHH
Q 007764 306 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 385 (590)
Q Consensus 306 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il 385 (590)
++||++.+.+.+.........+++.+++..++++. +..+++++.+|++..+++++++++||+.++.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999988667788999999999999999 54588899999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHhhhcCCCC
Q 007764 386 RIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNP 465 (590)
Q Consensus 386 ~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p 465 (590)
..+...+....+.+...++..++||.++++..++.++.....++... .......++.+++..++....|
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~-----------~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID-----------LVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc-----------cCcccccccHHHHHHHHHhcCc
Confidence 99999999988899999999999999999999999998888776530 0123456788999999999988
Q ss_pred CcccccccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEE
Q 007764 466 SALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (590)
Q Consensus 466 ~~~~~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~ 545 (590)
+ +......+.++|.++||++.+|+.+++.+.|++.+++.|.+.++++++|+|||||||||||+|||++|.+++.+|++
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 67778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 546 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 546 v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
+++++++++|+|+||++||++|++|++.+||||||||+|++++.
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~ 350 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASG 350 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhcc
Confidence 99999999999999999999999999999999999999999874
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-49 Score=415.44 Aligned_cols=252 Identities=49% Similarity=0.843 Sum_probs=242.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+.++++|+||||+++.+.+|++.+.+|++||+.|.++|+.++++||||||||||||++|+++|++.+.+|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchh
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~a 360 (590)
+|+|++|..++.+|+.|+...|||+|+||||+++.+|+...+++..|+++||++.|||+....+|+|||+||+|+.||+|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998777789999999999999999999999999999999999999
Q ss_pred hhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhh
Q 007764 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDET 440 (590)
Q Consensus 361 l~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 440 (590)
+.||||||+.|++|+||.+.|++||+.+++++++.+++|+..||..|+||+|+|+..+|++|+..++++..+
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred hhHHHhhhhhccHHHHHhhhcCCCCCc
Q 007764 441 IDAEILNSMAVTDEHFKTALGTSNPSA 467 (590)
Q Consensus 441 i~~~~~~~~~v~~~~~~~al~~~~p~~ 467 (590)
...++.++|.++++..+++.
T Consensus 659 -------a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred -------cccccHHHHHHHHHhhcccC
Confidence 45678899999999887764
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-49 Score=407.52 Aligned_cols=272 Identities=43% Similarity=0.755 Sum_probs=249.4
Q ss_pred ccccccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q 007764 196 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING 275 (590)
Q Consensus 196 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~ 275 (590)
|+....+|.++|+||||+++...+|...+.+|.++|++|+.+|+..|.|||||||||||||.||+++|++.+..|+.|.|
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKG 578 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKG 578 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecC
Confidence 33344678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC
Q 007764 276 PEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (590)
Q Consensus 276 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~ 355 (590)
++++++|+|++|..+|.+|+.|+...|||||+||+|+|++.|+........|+++||++.|||+..+.+|.|||+||+|+
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhc--CCCCCCccCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhcc
Q 007764 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTH--GYVGADLAALCTEAALQCIREKM 431 (590)
Q Consensus 356 ~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~~ 431 (590)
-||||+.|||||+..+++++|+.++|.+||+.+++ +.++..+++++.+|..+. ||+|+|+..||++|...++++.+
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~ 738 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESL 738 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 778899999999999987 99999999999999999998876
Q ss_pred cccccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcc
Q 007764 432 DVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (590)
Q Consensus 432 ~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~ 468 (590)
..++.......... ....++..+|..|++.++|+..
T Consensus 739 ~~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 739 FEIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred hhccccCcccceee-eeeeecHHHHHHHHHhcCCCcc
Confidence 64443332221111 1345788999999999998753
No 11
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-46 Score=389.45 Aligned_cols=270 Identities=44% Similarity=0.741 Sum_probs=243.3
Q ss_pred ccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 007764 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (590)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~ 279 (590)
+++|++.|+||||+++.+..|.+.+.+|++||++|.+ |+.+..|||||||||||||.+|+|+|.++...|+.|.|+|++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 4689999999999999999999999999999999954 778899999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC--CchhHHHHHHHHHHHhhhccc--cCCeEEEEeecCCCC
Q 007764 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK--THGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRPN 355 (590)
Q Consensus 280 ~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~--~~~~~~~~v~~~Ll~~ld~~~--~~~~v~vI~~tn~~~ 355 (590)
++|+|++|+++|++|+.|+...|||||+||+|+++|+|+. .++++..|++.||+..||++. ....|+||||||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999975 457799999999999999998 456899999999999
Q ss_pred CCchhhhccCCCceEEEecCCC-HHHHHHHHHHHhcCCCCCCccCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcccc
Q 007764 356 SIDPALRRFGRFDREIDIGVPD-EVGRLEVLRIHTKNMKLSDDVDLERIAKDTH-GYVGADLAALCTEAALQCIREKMDV 433 (590)
Q Consensus 356 ~ld~al~r~gRf~~~i~i~~P~-~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~-g~~~~dl~~l~~~a~~~~~~~~~~~ 433 (590)
.|||+|.||||||..+++++++ .+.+..+|+..++++.+.+++++.++|+.++ .|+|+|+-++|..|.+.++++....
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 5667899999999999999999999999985 6999999999999999999998765
Q ss_pred cccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccc
Q 007764 434 IDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRE 470 (590)
Q Consensus 434 ~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~ 470 (590)
++.......+.......++++||.++.++..|+..+.
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~ 939 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQ 939 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCCcccHH
Confidence 4432111122233467799999999999999886543
No 12
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.2e-41 Score=314.54 Aligned_cols=305 Identities=33% Similarity=0.562 Sum_probs=261.0
Q ss_pred hhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEEEeCCCCeEEecCCceEEecCCCccccccccCCCCCcccccc
Q 007764 133 GNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGG 212 (590)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~G 212 (590)
.++|+.|.+..|.+ ..++.|+.+.-.+....+.|+|+++.|.+.+++++.|.+.... +.. ......++++++|++|
T Consensus 50 ~~~F~~YArdQW~G--e~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~-~~~-~~~e~~~~it~ddViG 125 (368)
T COG1223 50 PEVFNIYARDQWLG--EVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLET-PRE-EDREIISDITLDDVIG 125 (368)
T ss_pred HHHHHHHHHHhhcc--eeeecCceEeecccccccceeEEEEeCCCCceecceEEEEecC-cch-hhhhhhccccHhhhhc
Confidence 46889999999974 4589999877666667889999999999988887777665542 211 1123457899999999
Q ss_pred hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHH
Q 007764 213 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRK 292 (590)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 292 (590)
+++.+++.+-++.+ +.+|+.|..| .|++||+|||||||||++|+++|++...+++.++..++++.++|+...+++.
T Consensus 126 qEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 126 QEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred hHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 99999999877766 8899999887 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEcccccccCCCCCCc-hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEE
Q 007764 293 AFEEAEKNAPSIIFIDEIDSIAPKREKTH-GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREI 371 (590)
Q Consensus 293 ~f~~a~~~~p~iL~iDEid~l~~~~~~~~-~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i 371 (590)
+++.|+...|||+||||+|+++-++.... -..-..+++.|++.||++.++..|+.|++||+|+.+|+++++ ||..+|
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEI 279 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEI 279 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhee
Confidence 99999999999999999999987765321 122357889999999999999999999999999999999998 999999
Q ss_pred EecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHhcccccccchhhhhHHHhhhhh
Q 007764 372 DIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLA-ALCTEAALQCIREKMDVIDLEDETIDAEILNSMA 450 (590)
Q Consensus 372 ~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~-~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 450 (590)
+|..|+.++|.+|++.+.+.+++.-+.+++.++..+.|++|+|+. .+++.|..+++.+. .-.
T Consensus 280 EF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed-----------------~e~ 342 (368)
T COG1223 280 EFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED-----------------REK 342 (368)
T ss_pred eeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-----------------hhh
Confidence 999999999999999999999999999999999999999999985 55566666666553 234
Q ss_pred ccHHHHHhhhcCCC
Q 007764 451 VTDEHFKTALGTSN 464 (590)
Q Consensus 451 v~~~~~~~al~~~~ 464 (590)
++.+|+..|++..+
T Consensus 343 v~~edie~al~k~r 356 (368)
T COG1223 343 VEREDIEKALKKER 356 (368)
T ss_pred hhHHHHHHHHHhhc
Confidence 67788888887643
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=334.43 Aligned_cols=264 Identities=41% Similarity=0.672 Sum_probs=236.9
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
.-+.+.|+||.|+.+.++.|+|++.+|+..|++|+.+ ..|-++||++||||||||+||+++|.+++..|+.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 3467999999999999999999999999999999875 467799999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc-hhHHHHHHHHHHHhhhccccC----CeEEEEeecCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH-GEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPN 355 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~-~~~~~~v~~~Ll~~ld~~~~~----~~v~vI~~tn~~~ 355 (590)
+|.|++|+.+|.+|+.|+...|++|||||||+|+.+|+... .+..+|+...|+..|||+... ..|+|+++||-|+
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 99999999999999999999999999999999999998653 356789999999999998653 2488999999999
Q ss_pred CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Q 007764 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID 435 (590)
Q Consensus 356 ~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~ 435 (590)
+||++++| ||...|+||.|+.+.|..+++..++...+.++++++.+++.++||+|+|+..+|++|.+..+|+......
T Consensus 364 diDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 364 DIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLT 441 (491)
T ss_pred chHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999998766443
Q ss_pred cchh-hhhHHHhhhhhccHHHHHhhhcCCCCCcc
Q 007764 436 LEDE-TIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (590)
Q Consensus 436 ~~~~-~i~~~~~~~~~v~~~~~~~al~~~~p~~~ 468 (590)
-.+. .+..+.. ...++..||..|+..++|+..
T Consensus 442 ~~ei~~lakE~~-~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 442 PREIRQLAKEEP-KMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred cHHhhhhhhhcc-ccccchhhHHHHHHHcCcCCC
Confidence 3322 2222222 366999999999999999865
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=316.03 Aligned_cols=246 Identities=42% Similarity=0.773 Sum_probs=226.8
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
++++-+|+-+||+++|+++|++.+++|.+||++|+.+||..|+++|||||||+|||.||+++|....+.|+.++|+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHH---HHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR---IVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~---v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|+....++++|-.|+...|+|+|+||||++...+..+++.-+.. ..-.|++.+|++....++-+|.+||+.+-+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999998886544333333 334566778899999999999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
||++.||||+++.|+||+|+++.|.+||++|.+++.+....++..+|+...|-+|+++..+|.+|.+.++++.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCC
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~ 463 (590)
...++.+||.-|...+
T Consensus 373 ----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 ----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred ----------hccccHHHHHHHHHHH
Confidence 4678889998776543
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-41 Score=313.11 Aligned_cols=246 Identities=46% Similarity=0.750 Sum_probs=226.8
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
.-+.++|.|+||++-+++++++.+++|+.|.+++++.||.||+++|+|||||||||+|++++|+...+.|+.+.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHH---HHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE---RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~---~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|+....++.+|..|+.+.|+|+||||+|+++-++-......+ .|++-.|++.||++.+..+|-||.+||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 999999999999999999999999999999999988755444443 45666778889999999999999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
||++.||||+++.|+||.|+..++.-++...+.+|.+.+++|++.+..+....+|+++.++|++|.+.+++...
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr------ 381 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR------ 381 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCC
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~ 463 (590)
..+...||.++.+..
T Consensus 382 -----------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 -----------YVVLQKDFEKAYKTV 396 (408)
T ss_pred -----------eeeeHHHHHHHHHhh
Confidence 445667777776543
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-41 Score=311.66 Aligned_cols=259 Identities=39% Similarity=0.712 Sum_probs=228.3
Q ss_pred CCCCeEEecCCceEEecCCCcc---cc---ccccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEE
Q 007764 174 DPPEYCVVAPDTEIFCEGEPVR---RE---DENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 247 (590)
Q Consensus 174 ~~~~~~~~~~~t~~~~~~~~~~---~~---~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL 247 (590)
.|.+.+-+..++.+.++.-|.. +. ..+.-+.-.|+||||+++++++|.+.+.+|+.|++-|.++||.||+++|+
T Consensus 131 kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLm 210 (424)
T KOG0652|consen 131 KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM 210 (424)
T ss_pred CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEe
Confidence 3556666677776655433321 21 12334566899999999999999999999999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHH
Q 007764 248 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (590)
Q Consensus 248 ~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~ 327 (590)
|||||||||.+||+.|...++.|+.+-++++...|.|+..+.+|..|+.|....|+|+||||+|++..++-.+...-++.
T Consensus 211 YGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred eCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875443333344
Q ss_pred HH---HHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHH
Q 007764 328 IV---SQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIA 404 (590)
Q Consensus 328 v~---~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la 404 (590)
+. -.|++.+|++.+...+-||++||+.+-+||+|.|.||+++.|+||.|+++.|.+|+++|.+++...++++++++|
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 44 446677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhccc
Q 007764 405 KDTHGYVGADLAALCTEAALQCIREKMD 432 (590)
Q Consensus 405 ~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (590)
+.|.+|.|+...++|.+|.+.++|+...
T Consensus 371 RsTddFNGAQcKAVcVEAGMiALRr~at 398 (424)
T KOG0652|consen 371 RSTDDFNGAQCKAVCVEAGMIALRRGAT 398 (424)
T ss_pred hcccccCchhheeeehhhhHHHHhcccc
Confidence 9999999999999999999999988643
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=321.43 Aligned_cols=246 Identities=46% Similarity=0.781 Sum_probs=227.4
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+.+.-+|.||||++.|+++|++.+++|+.||++++.+||.||++|+|||+||||||.||+++|+...+.|+.+-|+++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHH---HHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS---QLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~---~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|+....+|++|+-|..+.|+|+||||||++..+|-...+.-++.+.+ .|++.+|++.++..|-||.+||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999998886655554555544 456667889999999999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
||+|.||||+++.|+|+.||+..+..|+.+|+.+|.+..+++++.+...-..++|+|+.++|.+|.+-++|+.
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCC
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~ 463 (590)
...++.+||.++.+.+
T Consensus 411 ----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ----------HhhccHHHHHHHHHHH
Confidence 4667888998877654
No 18
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-41 Score=339.49 Aligned_cols=234 Identities=43% Similarity=0.733 Sum_probs=222.0
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
..+++|+|+-|+++.+++|.|++++ ++.|+-|.+||-+-|++|||+||||||||.|||++|++.+.+|++..|+++-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3578999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhh
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al 361 (590)
++|....++|.+|+.|+.+.||||||||||++..+|........+..++||+..||++.++..|+|||+||.|+.+|++|
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKAL 456 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHh
Confidence 99999999999999999999999999999999999987766677888999999999999999999999999999999999
Q ss_pred hccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Q 007764 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (590)
Q Consensus 362 ~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (590)
.||||||++|.+|.||...|.+||..|+.+.++..++|+.-+|+-|.||+|+|+.+++..|+.++.......+.+
T Consensus 457 ~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM 531 (752)
T KOG0734|consen 457 TRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTM 531 (752)
T ss_pred cCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999887665544433
No 19
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=347.38 Aligned_cols=230 Identities=42% Similarity=0.723 Sum_probs=223.4
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
..++|+||||+.++++.+.+.+++|.++|.+|.+..+.-+.|||||||||||||.||.++|...+..|+.+.|++++++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhh
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALR 362 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~ 362 (590)
.|.+|+.+|.+|..|+..+|||||+||+|+++|+|+..+.++..|+++||++.|||...-.+|.++|+|.+|+.|||||.
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccc
Q 007764 363 RFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (590)
Q Consensus 363 r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (590)
||||+|+.++.+.|++.+|++||+.....+....++|++.+|..|.||+|+|+..++..|-+.++++...
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988876543
No 20
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-40 Score=310.03 Aligned_cols=230 Identities=43% Similarity=0.779 Sum_probs=213.7
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+-+.++|.|+||+.+++++|++.+++|+.||+-|-+|||.||++||+|||||||||.+||++|+..++.|+.+-++++..
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|+|+....++++|+.|+....||+|+||+|++...+-... ..--+|..-.|++.+|++..++++-|+.+||+|+.+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 99999999999999999999999999999999988764332 222234444566778999999999999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (590)
||+|.||||+++.++|..|+.+.|.+|+++|.+.|....+..++.+|+.+.+-+|+++.++|.+|.+.+++..
T Consensus 330 dpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar 402 (435)
T KOG0729|consen 330 DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 402 (435)
T ss_pred CHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765
No 21
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-40 Score=360.95 Aligned_cols=383 Identities=38% Similarity=0.604 Sum_probs=304.1
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEechh
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCINGPE 277 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~-----~~~~~v~~~~ 277 (590)
..++|+++||++..+.+|+|++.+|+.+|++|.+++|.|++++|++||||||||+.|+++|..+. ..|+.-++.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 36899999999999999999999999999999999999999999999999999999999998873 3467778999
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 278 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 278 l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
..++|+|+.+..++.+|++|++.+|+|+|+||||-+++.+..........++.+|+.+|+|+..++.|++|||||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (590)
||+++|||||+++++|+.|+.+.|.+|+.+|+++..-. ...-+..+|..+.||.|+|+.++|.+|++.++++..+.++.
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999999887633 23457899999999999999999999999999988876665
Q ss_pred chhhhhHHHhhhhhccHHHHHhhhcCCCCCcccccccccCCcc-ccc-ccccchhhhcccceeecccCCh-------hhh
Q 007764 437 EDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVN-WED-IGGLENVKRELQETVQYPVEHP-------EKF 507 (590)
Q Consensus 437 ~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~-~~~-iggl~~vk~~L~~~v~~~~~~~-------~~~ 507 (590)
........ ...+.+...+|..|+....|+.-|...+....+. .-- +-+.......++..+.....-. ..+
T Consensus 500 s~~kl~~d-~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLLID-VALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred cccccccc-chhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 54433221 2344588999999999998887664322111111 000 0001111111111110000000 011
Q ss_pred hhcCC------CCCceeEEECCCCCChhHHHHHHHHHh-CCcEEEEeccchhhhh-ccchHHHHHHHHHHHhhCCCeEEE
Q 007764 508 EKFGM------SPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 579 (590)
Q Consensus 508 ~~~~~------~~~~gvLL~GppGtGKTtLAkalA~~~-~~~~i~v~~~el~~~~-vGese~~ir~~f~~Ar~~~p~vlf 579 (590)
..+.. --...+++.|..|.|=+-+.+++-..+ +.+..+...+.+++.- .+..+..|-.+|.+||...|||||
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 11111 111237888999999999999988776 5666666667776654 556688999999999999999999
Q ss_pred Ecccccc
Q 007764 580 FDELDSI 586 (590)
Q Consensus 580 ~DEid~l 586 (590)
+=.+|--
T Consensus 659 ip~~d~w 665 (1080)
T KOG0732|consen 659 IPNVDEW 665 (1080)
T ss_pred ccchhhh
Confidence 9877753
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=323.96 Aligned_cols=246 Identities=43% Similarity=0.727 Sum_probs=225.1
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+.+.++|+||||++.+++.|++.+.+|+.+|++|..+|+.+++++|||||||||||++|+++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
++.|+.+..++.+|..+....|+||||||+|.++.++.... .....+.+.++++.++++....++.+|++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999987764322 223356677888889988877889999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|+++.|+|||++.|+++.|+.++|..|++.++.++.+..++++..++..++||+|+|+.++|.+|.+.++++..
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~------ 371 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR------ 371 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987752
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCC
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~ 463 (590)
..++.+||..|+..+
T Consensus 372 -----------~~i~~~df~~A~~~v 386 (398)
T PTZ00454 372 -----------YVILPKDFEKGYKTV 386 (398)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 357788888887664
No 23
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-38 Score=299.73 Aligned_cols=228 Identities=39% Similarity=0.695 Sum_probs=211.5
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
-+++.|+|+.|++..++.|+|.+.+|.++|++|.. +..|-+++|||||||||||.||+++|.+.+..|+.|+.++++++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 47899999999999999999999999999999964 34567899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc-CCeEEEEeecCCCCCCchh
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPA 360 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~~tn~~~~ld~a 360 (590)
|.|+++..++.+|+.|+.+.|+||||||||.+|..+..+.++..+|+...|+-.|.+... ...|+|+|+||-|+.+|.+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 4479999999999999999
Q ss_pred hhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-CCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccc
Q 007764 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (590)
Q Consensus 361 l~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (590)
++| ||+..|+||.|+...|..+++.|+...+. ..+.|+.+|++.|+||+|+|+..+++.+.++.+|+...
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 999 99999999999999999999999877653 35678999999999999999999999999988876543
No 24
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=334.44 Aligned_cols=230 Identities=46% Similarity=0.789 Sum_probs=215.7
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
..++|.|+.|+++++++|.|++.+ |++|+.|.++|...|+|+||+||||||||.||+|+|++.+.+|+.++++++...+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 358999999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC----CchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCc
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK----THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~----~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld 358 (590)
.|....+++.+|+.++...|||+|+||||++...++. ..+.-....++||+..||++.....|+++++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999998842 233445667899999999999998999999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDV 433 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 433 (590)
++++||||||+.|.++.|+..+|.+|++.|.+...+. ++.++..+|..|+||+|+|+.++|.+|+..+.|+....
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~ 540 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLRE 540 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999885 77899999999999999999999999999999876543
No 25
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=306.26 Aligned_cols=229 Identities=45% Similarity=0.754 Sum_probs=215.4
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~-i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
-.++|+||||++..++++++.+.+|+++|++|..-+ ..++++||||||||||||.+|+++|++.++.|+.|..+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 367999999999999999999999999999996433 4688999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCe--EEEEeecCCCCCCch
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH--VIVIGATNRPNSIDP 359 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~--v~vI~~tn~~~~ld~ 359 (590)
|+|+.++.++.+|..|.+-+|+||||||+|+++..|+....+..+.+.+++..+.|++....+ |+|+||||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999999766667788888999999999988665 999999999999999
Q ss_pred hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Q 007764 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDV 433 (590)
Q Consensus 360 al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 433 (590)
++.| |+++.++++.|+..+|.+||+..++.-.+.+++|+.++|..|.||+|.|+..+|+.|+...+++.+..
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999887654
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.9e-36 Score=343.23 Aligned_cols=268 Identities=49% Similarity=0.845 Sum_probs=238.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
.+.++|++++|++..++.|++.+.+|+.+|+++.++++.++.++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC-chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchh
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~a 360 (590)
|.|+++..++.+|+.|+...|+||||||+|.+++.++.. ......+++++|+..|+++....+++||+|||+|+.+|++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 999999999999999999999999999999999887643 3446788999999999999888899999999999999999
Q ss_pred hhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccch-h
Q 007764 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED-E 439 (590)
Q Consensus 361 l~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~ 439 (590)
++|+|||++.++++.|+.++|.+||+.+.+++++..++++..+|..++||+|+|+..+|++|++.++++......... .
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999887544221100 0
Q ss_pred hhhHHHhhhhhccHHHHHhhhcCCCCCccc
Q 007764 440 TIDAEILNSMAVTDEHFKTALGTSNPSALR 469 (590)
Q Consensus 440 ~i~~~~~~~~~v~~~~~~~al~~~~p~~~~ 469 (590)
....+......++.+||..++...+|+...
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~~ps~~~ 716 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKVKPSVSK 716 (733)
T ss_pred cccccccccCcccHHHHHHHHHHcCCCCCH
Confidence 000111224578999999999999887543
No 27
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-36 Score=327.08 Aligned_cols=251 Identities=51% Similarity=0.833 Sum_probs=235.0
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..+.++|+++||++..++.+++.+.+|+.+|+.+...++.++.++|||||||||||++|+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchh
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~a 360 (590)
+|.|+++++++.+|..|+...|||||+||+|.+++.++........+++.+++.+++++....+|+||++||+|+.+|++
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHh
Confidence 99999999999999999999999999999999999998776666689999999999999999999999999999999999
Q ss_pred hhccCCCceEEEecCCCHHHHHHHHHHHhcCCC--CCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccch
Q 007764 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438 (590)
Q Consensus 361 l~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~--~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 438 (590)
+.|+|||+..++++.|+..+|.+|++.+++... +..++++..+++.+.||+|+|+..+|++|.+.++++..
T Consensus 395 ~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------- 467 (494)
T COG0464 395 LLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------- 467 (494)
T ss_pred hcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------
Confidence 999999999999999999999999999998554 46789999999999999999999999999999887753
Q ss_pred hhhhHHHhhhhhccHHHHHhhhcCCCCCc
Q 007764 439 ETIDAEILNSMAVTDEHFKTALGTSNPSA 467 (590)
Q Consensus 439 ~~i~~~~~~~~~v~~~~~~~al~~~~p~~ 467 (590)
...++.+||..+++...|+.
T Consensus 468 ---------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 468 ---------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred ---------cCCccHHHHHHHHHhcCCCC
Confidence 34578899999999887763
No 28
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.6e-36 Score=313.59 Aligned_cols=251 Identities=50% Similarity=0.822 Sum_probs=226.7
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..+.++|++|+|++++++.|++++.+|+.+|++|..+|+.++.++|||||||||||++|+++|++++.+++.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---hHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
.|.|+.+..++.+|+.+....|++|||||+|.++..+..... ....+.+.+++..++++....++.+|++||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999877654321 22244556777778887777789999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|+++.|+|||+..|+++.|+.++|.+||+.+++++.+..+.++..++..++||+|+|+..+|++|++.++++..
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~------ 357 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR------ 357 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999988889999999999999999999999999999887642
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCCCCCcc
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~ 468 (590)
..++.+||..|+..+.++.-
T Consensus 358 -----------~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 358 -----------TEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred -----------CCcCHHHHHHHHHHHhcccc
Confidence 34788999999988876543
No 29
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=313.08 Aligned_cols=246 Identities=48% Similarity=0.782 Sum_probs=222.6
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+.+..+|+||||+++++++|++++.+|+.+|+++.++|+.++.++|||||||||||++|+++|++++.+++.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchh---HHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|+.+..++.+|..+....|+||||||+|.++.++....+. ...+.+.+++..++++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 9999999999999999999999999999999999876532221 2244556777888888777789999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|+++.|+|||++.|+++.|+.++|.+||+.++..+.+..++++..++..+.||+|+|+..+|.+|++.++++..
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r------ 409 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR------ 409 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987752
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCC
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~ 463 (590)
..++.+||..|+..+
T Consensus 410 -----------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 -----------MKVTQADFRKAKEKV 424 (438)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 346778888877654
No 30
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-35 Score=309.39 Aligned_cols=234 Identities=47% Similarity=0.784 Sum_probs=219.1
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
..++|.|+.|.++.++.+.|++.. ++.|.-|..+|..-|+++||+||||||||+||+++|++.+.+|+.++++++...+
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 468999999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCch
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~ 359 (590)
+|-...++|.+|.+|+++.|||+||||+|++..+|+.. ........++||+..||++..+..|+++++||+|+-+|+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 99999999999999999999999999999999988643 223344578999999999998889999999999999999
Q ss_pred hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 360 al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
+|.|||||+++|.++.||...|.+|++.|.++.++..++++..+|+.|.||+|+|+.+++.+|+..+.++....+...
T Consensus 304 ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~ 381 (596)
T COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMR 381 (596)
T ss_pred hhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876655444
No 31
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.1e-33 Score=296.53 Aligned_cols=243 Identities=25% Similarity=0.408 Sum_probs=211.7
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
+..+|++|||++..++.+++.... ++....++|+.+++++|||||||||||++|+++|++++.+++.+++..+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 467899999999999988765432 23445678999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC-CchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhh
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al 361 (590)
.|+++.+++.+|+.++...||||||||+|.++.++.. ..+....+++.+++++|+. ....+++|+|||+++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875432 3345667888999999885 345799999999999999999
Q ss_pred hccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC--CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchh
Q 007764 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS--DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 439 (590)
Q Consensus 362 ~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~--~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 439 (590)
.|+|||+..++++.|+.++|.+|++.++.+.... .+.++..++..|+||+|+|+..+|.+|...++.+.
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 9999999999999999999999999998876532 47889999999999999999999999988776542
Q ss_pred hhhHHHhhhhhccHHHHHhhhcCCCCCcc
Q 007764 440 TIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (590)
Q Consensus 440 ~i~~~~~~~~~v~~~~~~~al~~~~p~~~ 468 (590)
..++.+||..++..+.|.+.
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCcc
Confidence 23678899999999988753
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=5.9e-33 Score=290.39 Aligned_cols=245 Identities=53% Similarity=0.863 Sum_probs=218.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..+.++|+|++|+++++++|++.+.+|+.+|+.+..+|+.+++++|||||||||||++|++++++++.+++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchh---HHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
.+.|+....++.+|+.+....|++|||||+|.+...+...... ...+.+.+++..++++....++.+|++||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 9999999999999999999999999999999998766433221 2234556677777777667789999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|+++.|++||++.++++.|+.++|.+|++.+...+.+..+.++..++..+.||+|+|+..+|.+|++.++++..
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~------ 348 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER------ 348 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999999888888999999999999999999999999999987642
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcC
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGT 462 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~ 462 (590)
..++.+||..|+..
T Consensus 349 -----------~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 349 -----------DYVTMDDFIKAVEK 362 (364)
T ss_pred -----------CccCHHHHHHHHHH
Confidence 34677788877654
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-34 Score=274.32 Aligned_cols=229 Identities=44% Similarity=0.768 Sum_probs=211.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
...+++|+.+||+..++..+++.+++|+..|++|..+||.+|.+++||||||+|||.+|++++...+..|+.+..+++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHh---hhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTL---MDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~---ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|++...+|+.|..|+...||+||+||||++...+.......++.+.++|.++ |++.....+|-+|.|||+|+.|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 9999999999999999999999999999999999888655555566666666555 5566667789999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (590)
||+|.|+||+++.+++|.|++..|..|++.|...+......+.+.+.+..++|.|+|+...|+++.+.+++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 999999999999999999999999999999999999888899999999999999999999999998766654
No 34
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=6.6e-33 Score=300.96 Aligned_cols=229 Identities=47% Similarity=0.789 Sum_probs=210.8
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
.+.++|+|++|+++.++++++++.. +++|+.+.++|..+++++||+||||||||++++++|++++.+++.++++++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 3678999999999999999999887 889999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCc
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld 358 (590)
+.|..+..++.+|+.+....|+||||||+|.+..+++.. ......+.+++|+..||++....+++||++||+++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999877642 12334577889999999998888999999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (590)
++++|+|||++.++++.|+.++|.+|++.+++......+.++..++..+.||+++|+..+|++|+..+.++..
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~ 280 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK 280 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999888887888999999999999999999999999887776543
No 35
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.3e-32 Score=290.03 Aligned_cols=222 Identities=43% Similarity=0.708 Sum_probs=196.2
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------E
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------F 270 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~----------~ 270 (590)
..+.++|+||||+++++++|++.+.+|+.+|++|..+|+.+++++|||||||||||++++++|++++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 457899999999999999999999999999999999999999999999999999999999999998543 6
Q ss_pred EEEechhhhhhccchhHHHHHHHHHHHHhc----CCeEEEEcccccccCCCCCC-chhHHHHHHHHHHHhhhccccCCeE
Q 007764 271 FCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHV 345 (590)
Q Consensus 271 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~----~p~iL~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (590)
+.+.++++.++|.|+++..++.+|+.++.. .|+|+||||+|.++.+++.. .++...+++.+|++.||++....++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 677888999999999999999999988763 69999999999999887643 3456778899999999999888899
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC-CCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-MKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 424 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~-~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (590)
++|++||+++.||+++.|||||+..|+++.|+.++|.+||+.++.. +++ ...+..+.|+.++++..+|+++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l------~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL------DADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc------hHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988753 333 222345789999999999999876
Q ss_pred HHHH
Q 007764 425 QCIR 428 (590)
Q Consensus 425 ~~~~ 428 (590)
..+.
T Consensus 409 ~~~a 412 (512)
T TIGR03689 409 HLYA 412 (512)
T ss_pred HHhh
Confidence 5543
No 36
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.3e-32 Score=308.75 Aligned_cols=342 Identities=24% Similarity=0.382 Sum_probs=237.5
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v 273 (590)
+=.++++.|.+++++++.+.+.. ....+++|+||||||||++++++|..+ +..++.+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 33677899999999988776644 234689999999999999999999987 6778999
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeec
Q 007764 274 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (590)
Q Consensus 274 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~t 351 (590)
+...+. .+|.|+++++++.+|+.+....++||||||+|.+.+.+....+..+ ..+.|...+ .++.+.+||+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~IgaT 318 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIGST 318 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEEec
Confidence 988887 4789999999999999998778999999999999876543332221 222233332 45689999999
Q ss_pred CCCC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-----CCccCHHHHHHhcCCCCHHH-----HH
Q 007764 352 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-----SDDVDLERIAKDTHGYVGAD-----LA 416 (590)
Q Consensus 352 n~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-----~~~~~l~~la~~t~g~~~~d-----l~ 416 (590)
+..+ ..|+++.| ||. .++++.|+.+++.+||+.....+.. -.+..+..++..++.|.... ..
T Consensus 319 t~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai 395 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 395 (731)
T ss_pred CHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHH
Confidence 8643 56999999 995 7999999999999999966543321 13344667777777765432 13
Q ss_pred HHHHHHHHHH-HHhcccccccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccccccccCCcccccccccchhhhcccc
Q 007764 417 ALCTEAALQC-IREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQE 495 (590)
Q Consensus 417 ~l~~~a~~~~-~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~~~~iggl~~vk~~L~~ 495 (590)
.++.+++... ++... .....++.+++..++.... -+....+.|++...+.++++.|.+
T Consensus 396 ~lld~a~a~~~~~~~~--------------~~~~~v~~~~i~~~i~~~t-------giP~~~~~~~~~~~l~~l~~~l~~ 454 (731)
T TIGR02639 396 DVIDEAGASFRLRPKA--------------KKKANVSVKDIENVVAKMA-------HIPVKTVSVDDREKLKNLEKNLKA 454 (731)
T ss_pred HHHHHhhhhhhcCccc--------------ccccccCHHHHHHHHHHHh-------CCChhhhhhHHHHHHHHHHHHHhc
Confidence 3444433211 11000 0123466677776665431 112224555666666666666666
Q ss_pred eeecccCChhhh------hhcCCC----CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh-----h------
Q 007764 496 TVQYPVEHPEKF------EKFGMS----PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-----M------ 554 (590)
Q Consensus 496 ~v~~~~~~~~~~------~~~~~~----~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~-----~------ 554 (590)
.+..+-...+.+ .+.|+. |...+||+||||||||+|||+||..++.+|+.++++++.. +
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~ 534 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP 534 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC
Confidence 554332222211 133432 4456899999999999999999999999999999999753 2
Q ss_pred -hccchHHHHHHHHHHHhhCCCeEEEEcccccccccC
Q 007764 555 -WFGESEANVREIFDKARQSAPCVLFFDELDSIATQV 590 (590)
Q Consensus 555 -~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~v 590 (590)
|+|..+ .+.+.+..+..+.+||||||||+++|+|
T Consensus 535 gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~~~ 569 (731)
T TIGR02639 535 GYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPDI 569 (731)
T ss_pred CCcccch--hhHHHHHHHhCCCeEEEEechhhcCHHH
Confidence 444332 3456677788899999999999999864
No 37
>CHL00176 ftsH cell division protein; Validated
Probab=99.98 E-value=1.6e-31 Score=292.93 Aligned_cols=229 Identities=44% Similarity=0.762 Sum_probs=208.6
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
..++|+|++|+++.++.+.+++.. +++|+.+..++...++++||+||||||||++|+++|++.+.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 467999999999999999998877 7889999999999999999999999999999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCch
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~ 359 (590)
.|.....++.+|+.+....|+||||||+|.+...++.. ........+.+|+..+|++....++++|++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998776432 223345677889999999888889999999999999999
Q ss_pred hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccc
Q 007764 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (590)
Q Consensus 360 al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (590)
++.|+|||++.+.++.|+.++|.+||+.+++...+..+.++..++..+.||+++|+..++.+++..+.++...
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~ 409 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKA 409 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998877788889999999999999999999999999887766544
No 38
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=3.9e-31 Score=294.57 Aligned_cols=346 Identities=22% Similarity=0.320 Sum_probs=228.4
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEec
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v~~ 275 (590)
.++.+.|.+++++++.+.+... ...++||+||||||||++++.++... +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 4567999999999988877552 24578999999999999999999874 445666666
Q ss_pred hhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCC
Q 007764 276 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (590)
Q Consensus 276 ~~l~--~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~ 353 (590)
..+. .+|.|+++.+++.+|..+....++||||||+|.++..+....+..+ +.+++..+..++.+.+||+|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d------~~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD------AANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH------HHHHHHHHHhCCCeEEEecCCh
Confidence 6665 4678999999999999998888899999999999877643322221 2233344445678999999998
Q ss_pred CC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCH-----HHHHHhcCCC-----CHHHHHHH
Q 007764 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDL-----ERIAKDTHGY-----VGADLAAL 418 (590)
Q Consensus 354 ~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l-----~~la~~t~g~-----~~~dl~~l 418 (590)
++ ..|+++.| ||. .|.++.|+.+++..||+.+...+....++.+ ...+..+..| .......+
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 64 46999998 994 7999999999999999988777666554443 3333334443 33345566
Q ss_pred HHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHhhhcCCC--C-Ccccc----cccccCCcccccccccchhhh
Q 007764 419 CTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSN--P-SALRE----TVVEVPNVNWEDIGGLENVKR 491 (590)
Q Consensus 419 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~--p-~~~~~----~~~~~~~v~~~~iggl~~vk~ 491 (590)
+.+++..... .+. .. ....++.+++...+.... | ..+.+ .......---..+.|+++..+
T Consensus 402 ldea~a~~~~--~~~---~~--------~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~ 468 (758)
T PRK11034 402 IDEAGARARL--MPV---SK--------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIE 468 (758)
T ss_pred HHHHHHhhcc--Ccc---cc--------cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHH
Confidence 6666543210 000 00 011233444444333221 1 00100 000111111134567777777
Q ss_pred cccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh-----hhhccchHHH----
Q 007764 492 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----TMWFGESEAN---- 562 (590)
Q Consensus 492 ~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~-----~~~vGese~~---- 562 (590)
.+.+.+....... .. .-+|..++||+||||||||++|+++|..++.+|+.++++++. ++++|.....
T Consensus 469 ~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~ 544 (758)
T PRK11034 469 ALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544 (758)
T ss_pred HHHHHHHHHhccc---cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccc
Confidence 6666654321100 00 123556799999999999999999999999999999999874 3444433211
Q ss_pred -HHHHHHHHhhCCCeEEEEcccccccccC
Q 007764 563 -VREIFDKARQSAPCVLFFDELDSIATQV 590 (590)
Q Consensus 563 -ir~~f~~Ar~~~p~vlf~DEid~l~~~v 590 (590)
-+.+.+..++.+.|||||||||+++|.|
T Consensus 545 ~~g~L~~~v~~~p~sVlllDEieka~~~v 573 (758)
T PRK11034 545 QGGLLTDAVIKHPHAVLLLDEIEKAHPDV 573 (758)
T ss_pred ccchHHHHHHhCCCcEEEeccHhhhhHHH
Confidence 1345556677888999999999999864
No 39
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-32 Score=265.92 Aligned_cols=117 Identities=52% Similarity=0.954 Sum_probs=114.0
Q ss_pred ccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 007764 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (590)
Q Consensus 472 ~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el 551 (590)
.-+.|+++|+||||+++..++++++|+.|+.||++|.++|+.||+|||||||||||||+||||+|+..+++||+|.||||
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 552 ~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
..||+||..+-||++|+-||..+||||||||||+++.
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~ 258 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGA 258 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhc
Confidence 9999999999999999999999999999999999975
No 40
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=266.99 Aligned_cols=262 Identities=41% Similarity=0.641 Sum_probs=222.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
...++.|+|++|++..++.+.+.+.+|+..|.+|..+. .+.+++||.||||+|||+|++++|.+.++.|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 44679999999999999999999999999999997663 56789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--cCCeEEEEeecCCCCCCc
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRPNSID 358 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~v~vI~~tn~~~~ld 358 (590)
+|.|+.+..++.+|+-|+..+|+|+||||+|.++.++.....+..+++..+++-.+++.. ...+|++|||||+|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999999966666677787777776666544 345899999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCC-CCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~-~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
.+++| ||...+++|.|+.+.|..+++..+...+ ...+.++..+++.|+||++.|+.++|.++++..++.......
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~-- 380 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTD-- 380 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchh--
Confidence 99999 9999999999999999999998776553 334578999999999999999999999999877665543200
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCCCCCccc
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTSNPSALR 469 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~ 469 (590)
-..+. ......++..+|..++..+.|+...
T Consensus 381 ~~~~~--~~~~r~i~~~df~~a~~~i~~~~s~ 410 (428)
T KOG0740|consen 381 LEFID--ADKIRPITYPDFKNAFKNIKPSVSL 410 (428)
T ss_pred hhhcc--hhccCCCCcchHHHHHHhhccccCc
Confidence 01111 1234557778888888888776543
No 41
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=1e-29 Score=282.18 Aligned_cols=230 Identities=43% Similarity=0.752 Sum_probs=209.2
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 283 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~ 283 (590)
...|+++.|++..++.+.+++.+ +..|+.+..++...+++++|+||||||||+++++++++++.+++.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 34688999999999999999987 56777888888888899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchh
Q 007764 284 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (590)
Q Consensus 284 g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~a 360 (590)
+.....++.+|..+....|+||||||+|.+..+++.. ......+.+++++..||++.....+++|++||+|+.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999999877542 2233456788999999999888899999999999999999
Q ss_pred hhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Q 007764 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVI 434 (590)
Q Consensus 361 l~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~ 434 (590)
++|+|||++.++++.|+.++|.+||+.+.++.++..+.++..+++.+.||+|+|+..+|++|+..+.++....+
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i 380 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 380 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999998899999999999999999999999999998887654433
No 42
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=8.3e-30 Score=253.85 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=173.1
Q ss_pred CCcccc-cchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 007764 205 VGYDDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 283 (590)
Q Consensus 205 ~~~~~i-~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~ 283 (590)
.+|+++ ||+--...-+..++.-.- ..+...+++++|.+++||||||||||++|+++|++++..++.++++++.++|.
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 345555 665544333333332111 12223367899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHh-----cCCeEEEEcccccccCCCCCCchhHHHHHH-HHHHHhhhcc------------ccCCeE
Q 007764 284 GESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIV-SQLLTLMDGL------------KSRAHV 345 (590)
Q Consensus 284 g~~~~~~~~~f~~a~~-----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~-~~Ll~~ld~~------------~~~~~v 345 (590)
|++++.++.+|..|.. .+||||||||||++++.++.....+..+++ .+|++++|+. .....|
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 9999999999999975 469999999999999998765555655555 8999998863 235579
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCC----CCHHHHHHHHHH
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG----YVGADLAALCTE 421 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g----~~~~dl~~l~~~ 421 (590)
.||+|||+|+.||++|+|+|||++.+ ..|+.++|.+||+.+++...+. ..++..++..+.| |.|+--..++.+
T Consensus 270 ~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~ 346 (413)
T PLN00020 270 PIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDD 346 (413)
T ss_pred eEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHH
Confidence 99999999999999999999999965 5899999999999999987775 4778888887766 566655666666
Q ss_pred HHHHHHH
Q 007764 422 AALQCIR 428 (590)
Q Consensus 422 a~~~~~~ 428 (590)
+..+.+.
T Consensus 347 ~v~~~i~ 353 (413)
T PLN00020 347 EVRKWIA 353 (413)
T ss_pred HHHHHHH
Confidence 5555543
No 43
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=1.2e-29 Score=291.05 Aligned_cols=203 Identities=21% Similarity=0.293 Sum_probs=171.4
Q ss_pred cccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc----------cc-----------
Q 007764 226 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL----------AG----------- 284 (590)
Q Consensus 226 ~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~----------~g----------- 284 (590)
.|.+.+.....+|+.+++||||+||||||||.||+++|++.+.+++.++++++..++ .|
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 444556677789999999999999999999999999999999999999999998654 11
Q ss_pred --------------------hh--HHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--
Q 007764 285 --------------------ES--ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-- 340 (590)
Q Consensus 285 --------------------~~--~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-- 340 (590)
.. ..+++.+|+.|++.+||||||||||+++.+... ...+.+|+..|++..
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~------~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN------YLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc------eehHHHHHHHhcccccc
Confidence 12 224888999999999999999999999876211 123688899998763
Q ss_pred -cCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHH--hcCCCCCCc-cCHHHHHHhcCCCCHHHHH
Q 007764 341 -SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH--TKNMKLSDD-VDLERIAKDTHGYVGADLA 416 (590)
Q Consensus 341 -~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~--~~~~~~~~~-~~l~~la~~t~g~~~~dl~ 416 (590)
...+|+||||||+|+.+||||+|||||++.|+++.|+..+|.+++..+ ++++.+..+ +++..+|..|.||+|+|++
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 345799999999999999999999999999999999999999988754 556666544 6899999999999999999
Q ss_pred HHHHHHHHHHHHhccccc
Q 007764 417 ALCTEAALQCIREKMDVI 434 (590)
Q Consensus 417 ~l~~~a~~~~~~~~~~~~ 434 (590)
++|.+|+..++++....+
T Consensus 1848 nLvNEAaliAirq~ks~I 1865 (2281)
T CHL00206 1848 ALTNEALSISITQKKSII 1865 (2281)
T ss_pred HHHHHHHHHHHHcCCCcc
Confidence 999999999998875543
No 44
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=4.8e-28 Score=275.13 Aligned_cols=186 Identities=23% Similarity=0.347 Sum_probs=139.0
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CeEEEE
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCI 273 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~----------~~~~~v 273 (590)
+-.++++.|.++.++++.+.+.. ....+++|+||||||||++++.+|..+. ..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34677899999987777665543 2345889999999999999999999862 456777
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 274 NGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 274 ~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
+...+. ..+.|+++.+++.+|+.+.. ..+.||||||+|.+.+.+.... ..+ .. +++.....++.+.+||+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d--~~----n~Lkp~l~~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD--AA----NLLKPALARGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc--HH----HHhhHHhhCCCeEEEEe
Confidence 776665 36889999999999999865 4678999999999987654321 111 11 22333446778999999
Q ss_pred cCCCC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-----CccCHHHHHHhcCCCCH
Q 007764 351 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 351 tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-----~~~~l~~la~~t~g~~~ 412 (590)
|+..+ .+|++|.| || ..|.++.|+.+++..||+.+.+.+... .+..+..++..+++|..
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 98643 47999999 99 589999999999999987666544322 34457777788887754
No 45
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.4e-28 Score=263.26 Aligned_cols=353 Identities=23% Similarity=0.364 Sum_probs=229.6
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v~ 274 (590)
-.++.++|-+++++++.+.+.... ..+-+|+|+||+|||.++..+|... +..++.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 356779999999999988886633 3467889999999999999999875 34567777
Q ss_pred chhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 275 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 275 ~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
...+. .+|.|+.|++++.++++.....+.||||||+|.+.+.....++.++ ..+++.....++.+-+||+|+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D------AaNiLKPaLARGeL~~IGATT 307 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD------AANLLKPALARGELRCIGATT 307 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc------hhhhhHHHHhcCCeEEEEecc
Confidence 66665 4799999999999999999888999999999999887654321122 124455555778889999886
Q ss_pred CCC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCcc-----CHHHHHHhcCCCCH-----HHHHH
Q 007764 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDV-----DLERIAKDTHGYVG-----ADLAA 417 (590)
Q Consensus 353 ~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~-----~l~~la~~t~g~~~-----~dl~~ 417 (590)
.-+ .-|+||.| || ..|.+..|+.++-..||+-....+.....+ .+...+..++.|.. .-...
T Consensus 308 ~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAID 384 (786)
T COG0542 308 LDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAID 384 (786)
T ss_pred HHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHH
Confidence 443 34899999 99 789999999999999999776666544332 24444444444432 22233
Q ss_pred HHHHHHHHHHHhcccccccc--hhh----------------------hhH-------------HHhhhhhccHHHHHhhh
Q 007764 418 LCTEAALQCIREKMDVIDLE--DET----------------------IDA-------------EILNSMAVTDEHFKTAL 460 (590)
Q Consensus 418 l~~~a~~~~~~~~~~~~~~~--~~~----------------------i~~-------------~~~~~~~v~~~~~~~al 460 (590)
++.+|+............++ +.. +.. ..... .++.+++....
T Consensus 385 LiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv 463 (786)
T COG0542 385 LLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEVV 463 (786)
T ss_pred HHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHHH
Confidence 44444322211100000000 000 000 00000 12223333332
Q ss_pred cCC---CCCcc----cccccccCCcccccccccchhhhcccceeecccCChhhhhhcCC----CCCceeEEECCCCCChh
Q 007764 461 GTS---NPSAL----RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKT 529 (590)
Q Consensus 461 ~~~---~p~~~----~~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~----~~~~gvLL~GppGtGKT 529 (590)
..+ ....+ ++..+..+..-...+.|+++.-..+.+.|.. .+.|+ +|.+++||.||+|+|||
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKT 535 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKT 535 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHH
Confidence 221 11101 0111112222223344554444444333321 23444 45567999999999999
Q ss_pred HHHHHHHHHhC---CcEEEEeccchhhh------------hccchHHHHHHHHHHHhhCCCeEEEEcccccccccC
Q 007764 530 LLAKAIANECQ---ANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQV 590 (590)
Q Consensus 530 tLAkalA~~~~---~~~i~v~~~el~~~------------~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~v 590 (590)
.|||+||..+. -++|+++|||++.+ |||..| =+.+.+..|+.|+|||+|||||+.||+|
T Consensus 536 ELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHpdV 609 (786)
T COG0542 536 ELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHPDV 609 (786)
T ss_pred HHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcCHHH
Confidence 99999999996 78999999999765 777666 3589999999999999999999999986
No 46
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=6.2e-28 Score=275.78 Aligned_cols=353 Identities=23% Similarity=0.379 Sum_probs=220.4
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v~ 274 (590)
-.++++.|.+++++++.+++.. ....+++|+||||||||++++.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3577899999999999888765 235689999999999999999999986 36789999
Q ss_pred chhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 275 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 275 ~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
...+. .+|.|+++++++.+|+.+....+.||||||+|.+...+....+ . . ..+++.....++.+.+||+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~--~----~a~lLkp~l~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-I--D----AANILKPALARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-c--c----HHHHhHHHHhCCCcEEEEeCC
Confidence 88887 4788999999999999998888899999999999876543221 1 1 112233344567899999998
Q ss_pred CCC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC----CCC-CCccCHHHHHHhcCCCCHH-----HHHH
Q 007764 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN----MKL-SDDVDLERIAKDTHGYVGA-----DLAA 417 (590)
Q Consensus 353 ~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~----~~~-~~~~~l~~la~~t~g~~~~-----dl~~ 417 (590)
..+ ..|+++.+ ||. .+.++.|+.++...|++..... ..+ -.+..+..++..+++|.+. ....
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaid 392 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAID 392 (821)
T ss_pred HHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHH
Confidence 764 46899998 884 5899999999998888754321 111 2334467777777777642 1223
Q ss_pred HHHHHHHH-HHHhcccccccc------------hh------hhhH------------HHh---------------hhhhc
Q 007764 418 LCTEAALQ-CIREKMDVIDLE------------DE------TIDA------------EIL---------------NSMAV 451 (590)
Q Consensus 418 l~~~a~~~-~~~~~~~~~~~~------------~~------~i~~------------~~~---------------~~~~v 451 (590)
++.+++.. .+.......... .. .... +.. ....+
T Consensus 393 lld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 472 (821)
T CHL00095 393 LLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVV 472 (821)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc
Confidence 34433321 111100000000 00 0000 000 00112
Q ss_pred cHHHHHhhhcCCC--C-Ccccc----cccccCCcccccccccchhhhcccceeecccCChhhhhhcCC----CCCceeEE
Q 007764 452 TDEHFKTALGTSN--P-SALRE----TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLF 520 (590)
Q Consensus 452 ~~~~~~~al~~~~--p-~~~~~----~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~----~~~~gvLL 520 (590)
+.+++...+.... | ..+.+ ........--..+.|+++..+.+...+.. .+.|+ +|...+||
T Consensus 473 ~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~lf 544 (821)
T CHL00095 473 TEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRR--------ARVGLKNPNRPIASFLF 544 (821)
T ss_pred CHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHH--------HhhcccCCCCCceEEEE
Confidence 3333332222110 0 00000 00000000012233444444444333321 12232 23445899
Q ss_pred ECCCCCChhHHHHHHHHHh---CCcEEEEeccchh-----hh-------hccchHHHHHHHHHHHhhCCCeEEEEccccc
Q 007764 521 YGPPGCGKTLLAKAIANEC---QANFISVKGPELL-----TM-------WFGESEANVREIFDKARQSAPCVLFFDELDS 585 (590)
Q Consensus 521 ~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~-----~~-------~vGese~~ir~~f~~Ar~~~p~vlf~DEid~ 585 (590)
+||+|||||+||++||..+ +.+++.++++++. ++ |+|..+ .+.+.+..+..+.+||||||+|+
T Consensus 545 ~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 545 SGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred ECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhh
Confidence 9999999999999999987 4689999998873 23 444433 24677888888999999999999
Q ss_pred ccccC
Q 007764 586 IATQV 590 (590)
Q Consensus 586 l~~~v 590 (590)
++|.|
T Consensus 623 a~~~v 627 (821)
T CHL00095 623 AHPDI 627 (821)
T ss_pred CCHHH
Confidence 99864
No 47
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.9e-28 Score=225.37 Aligned_cols=115 Identities=47% Similarity=0.919 Sum_probs=112.4
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
+-|.+++.|+||++--|++++++++.|+.|.+.++.+|+.||+|+|||||||||||+|||++|+.....||+|.|+|+..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|.||..+.+|++|+-|++++|+|||+||||++|.
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiat 262 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT 262 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh
Confidence 99999999999999999999999999999999985
No 48
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.94 E-value=5.4e-26 Score=242.11 Aligned_cols=251 Identities=24% Similarity=0.387 Sum_probs=177.3
Q ss_pred CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHH
Q 007764 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (590)
Q Consensus 301 ~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~ 380 (590)
.|.++++.|++.++.+. .+.+.|.++....+...+.+|+.+.+ -.+++.|.+ +-..++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~~---------~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLNDI---------SISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcch---------HHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 37899999999888321 12333333333333344444444433 347788874 56788999999999
Q ss_pred HHHHHHHHhcCCCC-CCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHhh
Q 007764 381 RLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTA 459 (590)
Q Consensus 381 r~~Il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~a 459 (590)
..++++........ .++.+++.++..+.|++..++..++..+.... .. ++.+ .+ ....+.-.+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~--~~---~~~~--~~--------~~i~~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY--KT---IDEN--SI--------PLILEEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CC---CChh--hH--------HHHHHHHHHH
Confidence 99999877654332 24556889999999999999888877643210 00 1110 00 0001111111
Q ss_pred hcCCCCCcccccccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 460 LGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 460 l~~~~p~~~~~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
+... ..- -...+.++|+++||++.+|+.+.+... .+.....++|+.+++|+|||||||||||++||++|+++
T Consensus 212 ~~~~---~~l--e~~~~~~~~~dvgGl~~lK~~l~~~~~---~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 ISQT---EIL--EFYSVNEKISDIGGLDNLKDWLKKRST---SFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hhhh---ccc--cccCCCCCHHHhcCHHHHHHHHHHHHH---HhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 1111 000 011246789999999999998876432 23345567899999999999999999999999999999
Q ss_pred CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 540 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 540 ~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+.+|+.+++++++++|+|++|++++++|+.|+..+||||||||||++.+
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~ 332 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFS 332 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc
Confidence 9999999999999999999999999999999999999999999999865
No 49
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-27 Score=226.64 Aligned_cols=118 Identities=44% Similarity=0.868 Sum_probs=112.4
Q ss_pred cccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 007764 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (590)
Q Consensus 471 ~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~e 550 (590)
.+.+-|++.|+|+.|++..|+.|+++|.+|++.|..|.. ..+|-+|+||||||||||+-||||+|++.+..|++|..++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 456789999999999999999999999999999999986 6778899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
|+++|.||||+-|+.+|+.||++.|+|||+||||++..+
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~ 240 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGS 240 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccC
Confidence 999999999999999999999999999999999998753
No 50
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.94 E-value=1.2e-25 Score=256.49 Aligned_cols=184 Identities=23% Similarity=0.385 Sum_probs=138.7
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v~ 274 (590)
=.++++.|.+++++++.+++.. ....+++|+||||||||++++.+|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3567899999988887777654 234589999999999999999999987 66788888
Q ss_pred chhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeec
Q 007764 275 GPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (590)
Q Consensus 275 ~~~l~--~~~~g~~~~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~t 351 (590)
...+. .++.|+++++++.+|..... ..++||||||+|.+.+.+.... ..+ .. +.+.....++.+.+||+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d--~~----~~lkp~l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMD--AG----NMLKPALARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chh--HH----HHhcchhhcCCCeEEEcC
Confidence 77766 46889999999999998654 5688999999999987654322 222 11 223344467789999999
Q ss_pred CCCC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCC-----ccCHHHHHHhcCCCC
Q 007764 352 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD-----DVDLERIAKDTHGYV 411 (590)
Q Consensus 352 n~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~-----~~~l~~la~~t~g~~ 411 (590)
+..+ .+|+++.| ||. .|.++.|+.+++..||+.+...+.... +..+...+..+++|.
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 9876 47999999 996 688999999999999988766554432 223344445555554
No 51
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.94 E-value=1.6e-25 Score=256.74 Aligned_cols=185 Identities=22% Similarity=0.357 Sum_probs=140.4
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v~ 274 (590)
=.++.+.|.+++++++.+.+.. ....+++|+||||||||++++.++..+ +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 3567899999988888777654 234578999999999999999999885 56678888
Q ss_pred chhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeec
Q 007764 275 GPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (590)
Q Consensus 275 ~~~l~--~~~~g~~~~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~t 351 (590)
...+. .+|.|+.+.+++.+|..+.. ..+.||||||+|.+.+.+.... .. ... +.+.....++.+.+||+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~--d~~----~~Lk~~l~~g~i~~IgaT 309 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM--DAG----NMLKPALARGELHCIGAT 309 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh--HHH----HHhchhhhcCceEEEEeC
Confidence 77765 46889999999999998865 4589999999999986543221 11 111 233334466789999999
Q ss_pred CCCC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCc-----cCHHHHHHhcCCCCH
Q 007764 352 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDD-----VDLERIAKDTHGYVG 412 (590)
Q Consensus 352 n~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~-----~~l~~la~~t~g~~~ 412 (590)
+..+ .+|+++.| ||. .+.++.|+.+++..||+.....+..... ..+...+..+++|..
T Consensus 310 t~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 310 TLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred cHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 8764 47999999 995 5899999999999999987776665433 345666777777754
No 52
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.1e-26 Score=214.08 Aligned_cols=127 Identities=46% Similarity=0.842 Sum_probs=117.3
Q ss_pred CCCCcccccccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc
Q 007764 463 SNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 542 (590)
Q Consensus 463 ~~p~~~~~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~ 542 (590)
+.|+...-..-+-|+++++|+||-.+--+.|++.++.|+.|+++|.++|+.|++|+|||||||||||++|+|+|+..+.-
T Consensus 159 idpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 159 IDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred CCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 34444333455678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 543 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 543 ~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
||+|-|+||..+||||..+.+|++|+.||...-|||||||||++..+
T Consensus 239 firvigselvqkyvgegarmvrelf~martkkaciiffdeidaigga 285 (435)
T KOG0729|consen 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGA 285 (435)
T ss_pred EEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCc
Confidence 99999999999999999999999999999999999999999998753
No 53
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-26 Score=226.44 Aligned_cols=116 Identities=47% Similarity=0.810 Sum_probs=110.4
Q ss_pred ccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 007764 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (590)
Q Consensus 472 ~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el 551 (590)
+-.-|+++|+||.|+.+.|+.|+++|..|+..|+-|.. ..+|=+|+|++||||||||+||||+|+||+-.|+-|..+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 34568999999999999999999999999999999987 56788999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 552 ~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.|||-||||+-||-+|+-||..+|++|||||||+|..
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 318 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHh
Confidence 9999999999999999999999999999999999964
No 54
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.5e-25 Score=206.18 Aligned_cols=116 Identities=48% Similarity=0.910 Sum_probs=112.2
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
.+|+..++-+||++.--+++++.++.|.+||+.|..+|+..|+|+|||||||||||+||+++|....+.||+|.|+||..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
+|+||..+.+|++|-.||..+|+|||.|||||+..+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~ 255 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSS 255 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccc
Confidence 999999999999999999999999999999999753
No 55
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.4e-25 Score=208.56 Aligned_cols=115 Identities=47% Similarity=0.896 Sum_probs=111.1
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
..|.-+|.|+||++.--+++++.+++|+.||+.+..+|++||+|++|||+||||||+||||+|+...+.|+++.|+||+.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|.|+..+-+|++|+-|...+|||+|+||||++..
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt 292 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc
Confidence 99999999999999999999999999999999864
No 56
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-24 Score=212.93 Aligned_cols=111 Identities=50% Similarity=0.876 Sum_probs=106.5
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcC-CCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~-~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~ 555 (590)
.++|+||||++.++++|++.|.+|+.+++.|...+ ++|++|+|||||||||||++||++|++++++||.|.++.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 78999999999999999999999999999997544 57899999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 556 FGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 556 vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
+||+++.++.+|.-|..-.|||||+||+|++.
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L 199 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFL 199 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHH
Confidence 99999999999999999999999999999975
No 57
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.2e-24 Score=198.95 Aligned_cols=114 Identities=46% Similarity=0.892 Sum_probs=110.3
Q ss_pred cCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 007764 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (590)
Q Consensus 475 ~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~ 554 (590)
-|.-.++||||++.--++|.+++..|+.|+++|.++|++||+|+|+|||||||||++|++.|...+..|+.+-||.|..|
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 555 ~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
|+|+..+-+|+.|.-|...+|+|||+||+|++..
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt 278 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT 278 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhcc
Confidence 9999999999999999999999999999999864
No 58
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7e-24 Score=216.10 Aligned_cols=113 Identities=42% Similarity=0.820 Sum_probs=108.6
Q ss_pred cCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 007764 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (590)
Q Consensus 475 ~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~ 554 (590)
..+++|+|+-|.++.|++|.+.|++ ++.|+.|.++|=+.|+||||+||||||||+||||+|+|.+.+|+...|+|+-.+
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3488999999999999999999887 788999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 555 ~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
|||...+.||++|+.|+..+||||||||||++..
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~ 410 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGG 410 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcc
Confidence 9999999999999999999999999999999864
No 59
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.89 E-value=6.2e-24 Score=199.06 Aligned_cols=109 Identities=42% Similarity=0.838 Sum_probs=99.1
Q ss_pred cCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 007764 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (590)
Q Consensus 475 ~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~ 554 (590)
.+++.++|+.|+++.|+..+-.+.| +++|+.|.+ =.|+++|||||||||||++||+||++.+.+|+.++.+++++.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 5688999999999999987766554 566666554 468899999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 555 ~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
|||+..+.|+++|++|++.+|||+|+||+|+|+
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAia 223 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIA 223 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhh
Confidence 999999999999999999999999999999987
No 60
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.88 E-value=2.5e-23 Score=217.35 Aligned_cols=116 Identities=49% Similarity=0.916 Sum_probs=112.2
Q ss_pred cccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh
Q 007764 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (590)
Q Consensus 473 ~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~ 552 (590)
.+.|.++|+|+||++..++++++.+.+|+.+++.|.++|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 553 ~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
++|+|++++.++++|..|+...||||||||||++.+
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT 252 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc
Confidence 999999999999999999999999999999999864
No 61
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-22 Score=219.87 Aligned_cols=112 Identities=43% Similarity=0.832 Sum_probs=108.1
Q ss_pred CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh
Q 007764 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (590)
Q Consensus 476 ~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~ 555 (590)
..+.|.|+.|.++.|++|.|.|.+ +++|+.|.++|.++|+|+||+||||||||+||||+|+|++.||+++.|+|++.++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 358999999999999999999886 7999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 556 FGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 556 vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|.-...||++|..||..+|||+|+||||+++.
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~ 417 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGR 417 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccc
Confidence 999999999999999999999999999999874
No 62
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.2e-22 Score=192.30 Aligned_cols=113 Identities=43% Similarity=0.858 Sum_probs=109.8
Q ss_pred CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh
Q 007764 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (590)
Q Consensus 476 ~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~ 555 (590)
.+++++.+||+...-.++++.++.|+.+++.|.++|++||.+++||||||+|||.+|+++|..++.||+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 556 FGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 556 vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|||.+.||+.|+-|++..|||||+||||+++.
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigG 239 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGG 239 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhcc
Confidence 999999999999999999999999999999864
No 63
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.86 E-value=2.6e-22 Score=213.53 Aligned_cols=116 Identities=49% Similarity=0.982 Sum_probs=108.6
Q ss_pred cccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------c
Q 007764 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------N 542 (590)
Q Consensus 473 ~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~----------~ 542 (590)
.+.|+++|++|||++..++.+++.+.+|+.|++.|.++++.+++|+|||||||||||++||++|++++. .
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 346899999999999999999999999999999999999999999999999999999999999999854 3
Q ss_pred EEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 543 FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 543 ~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
|+.+++++++++|+|++++.++.+|+.|+.. .||||||||+|++++
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~ 303 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR 303 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc
Confidence 8899999999999999999999999999874 699999999999875
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.86 E-value=3.6e-22 Score=209.79 Aligned_cols=118 Identities=55% Similarity=0.970 Sum_probs=113.2
Q ss_pred cccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 007764 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (590)
Q Consensus 471 ~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~e 550 (590)
...+.|.+.|+++||+++.++.+.+.+.+|+.+++.|.++|+.+++|+|||||||||||++||++|.+++.+|+.+.+++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+.++|+|++++.++++|+.|+...||||||||+|++++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~ 238 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA 238 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhc
Confidence 99999999999999999999999999999999999863
No 65
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.85 E-value=7.9e-22 Score=207.23 Aligned_cols=115 Identities=48% Similarity=0.909 Sum_probs=111.2
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
+.|.++|+||||++..++++.+.+.+|+.+++.+..+++.++.|+|||||||||||++||++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|+|++++.++++|+.|+...||||||||||++..
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 290 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT 290 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc
Confidence 99999999999999999999999999999999864
No 66
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.84 E-value=1e-21 Score=196.23 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=76.5
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHhh-----CCCeEEEEcccc
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDELD 584 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~-----~~p~vlf~DEid 584 (590)
.++++|.+++||||||||||++|+++|.+++.+||.++++|++++|+||||+.||++|+.|++ .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 578999999999999999999999999999999999999999999999999999999999986 469999999999
Q ss_pred ccccc
Q 007764 585 SIATQ 589 (590)
Q Consensus 585 ~l~~~ 589 (590)
++++.
T Consensus 223 A~~g~ 227 (413)
T PLN00020 223 AGAGR 227 (413)
T ss_pred hcCCC
Confidence 99875
No 67
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.84 E-value=2.8e-20 Score=165.74 Aligned_cols=130 Identities=49% Similarity=0.831 Sum_probs=118.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcC-CeEEEEcccccccCCCCCCchh
Q 007764 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGE 323 (590)
Q Consensus 245 vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-p~iL~iDEid~l~~~~~~~~~~ 323 (590)
|||+||||||||++++.+|+.++.+++.++++++.+.+.++....+..+|+.+.... |++|||||+|.+.++.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999999999999999999999998887 9999999999999888555667
Q ss_pred HHHHHHHHHHHhhhccccC-CeEEEEeecCCCCCCchhhhccCCCceEEEecC
Q 007764 324 VERRIVSQLLTLMDGLKSR-AHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 375 (590)
Q Consensus 324 ~~~~v~~~Ll~~ld~~~~~-~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~ 375 (590)
....+.++|+..++..... .++++|++||.++.+++++.| +||+..++++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7788999999999987765 569999999999999999998 89999999863
No 68
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.5e-21 Score=213.68 Aligned_cols=114 Identities=43% Similarity=0.894 Sum_probs=109.5
Q ss_pred CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccc
Q 007764 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 550 (590)
Q Consensus 476 ~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~e 550 (590)
..+.|+++||++++...|+++|..|+.|++.|.+++++|++|+||+||||||||+.|+++|..| +..|+.-+|++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 4789999999999999999999999999999999999999999999999999999999999998 45699999999
Q ss_pred hhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
.+++||||.|+.+|.+|+.|+...|+||||||||-|||.
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapv 378 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPV 378 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEecccccccccc
Confidence 999999999999999999999999999999999999883
No 69
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.8e-21 Score=194.11 Aligned_cols=113 Identities=45% Similarity=0.821 Sum_probs=106.8
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
..+++.|+|++|++.+|+.+.+.+.||...++.|..+ ..|.+|+||.||||+|||+|++++|.|++..|+.+.++.|.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 3567999999999999999999999999999999863 356789999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
+|+|++|+.||.+|.-||...|+|+|+||||++.
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidsll 258 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLL 258 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHH
Confidence 9999999999999999999999999999999985
No 70
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=7.3e-19 Score=176.72 Aligned_cols=212 Identities=17% Similarity=0.298 Sum_probs=158.1
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCC---CceEEEECCCCCcHHHHHHHHHHHhC-------CeEEEEechh
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPE 277 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~---~~~vLL~GppGtGKTtla~~la~~~~-------~~~~~v~~~~ 277 (590)
++++|+++++++|++++.+ +..+.+...+|+.+ +.+++|+||||||||++|+++|+.+. .+++.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999887 44566777777754 44699999999999999999998752 3588999999
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC--
Q 007764 278 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN-- 355 (590)
Q Consensus 278 l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~-- 355 (590)
+.+.+.|+++...+.+|+.+. ++||||||++.+...+. .......++..|+.+|+... .++++|++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHH
Confidence 999999988888888888764 35999999999865432 22344677788888887643 4567777765421
Q ss_pred ---CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCC--CCCccCHHHHHHh------cCCCC-HHHHHHHHHHHH
Q 007764 356 ---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAKD------THGYV-GADLAALCTEAA 423 (590)
Q Consensus 356 ---~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~--~~~~~~l~~la~~------t~g~~-~~dl~~l~~~a~ 423 (590)
.++|++++ ||+..++|+.++.+++.+|+...+.... +.++. ...+... ...|. ++.+..++..+.
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 33688988 9999999999999999999998876443 33322 2222221 23444 688888888887
Q ss_pred HHHHHhc
Q 007764 424 LQCIREK 430 (590)
Q Consensus 424 ~~~~~~~ 430 (590)
.+...+.
T Consensus 252 ~~~~~r~ 258 (287)
T CHL00181 252 MRQANRI 258 (287)
T ss_pred HHHHHHH
Confidence 7665554
No 71
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.80 E-value=2.7e-20 Score=202.37 Aligned_cols=114 Identities=43% Similarity=0.894 Sum_probs=108.8
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
+.+.++|++++|++++|+++.+.+.+ +.+++.+.+++..+++|+|||||||||||++||++|.+++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 45789999999999999999998887 78999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|+|++++.++++|+.|+..+||||||||||++.+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh
Confidence 99999999999999999999999999999999875
No 72
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2e-20 Score=199.62 Aligned_cols=112 Identities=40% Similarity=0.863 Sum_probs=107.4
Q ss_pred CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh
Q 007764 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (590)
Q Consensus 476 ~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~ 555 (590)
..+++.|+.|.++.|++|.+.|.+ ++.|..|.++|...|+|+||+||||||||+|||++|++.+.||+++.||+++.+|
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 478999999999999999999875 7889999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 556 FGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 556 vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
||--.+-+|++|.+|++++||||||||||++..
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr 256 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR 256 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhccc
Confidence 999999999999999999999999999999864
No 73
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=1.1e-18 Score=175.59 Aligned_cols=212 Identities=19% Similarity=0.288 Sum_probs=157.3
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCCCC---CceEEEECCCCCcHHHHHHHHHHHhC-------CeEEEEechhh
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 278 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~---~~~vLL~GppGtGKTtla~~la~~~~-------~~~~~v~~~~l 278 (590)
+++|+++++++|++++.+ ...++.+..+|+.+ +.+++|+||||||||++|++++..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 599999999999999988 56777888888764 45899999999999999999988763 36899999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC--C-
Q 007764 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP--N- 355 (590)
Q Consensus 279 ~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~--~- 355 (590)
.+.+.|+++..++.+|+.+.. ++|||||++.+.+.+. .......+.++|+..|+.. ..++++|++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 999999888888888888743 6999999999864432 1234456778888888754 3466777776543 2
Q ss_pred --CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHh-----cCCC--CHHHHHHHHHHHHHH
Q 007764 356 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD-----THGY--VGADLAALCTEAALQ 425 (590)
Q Consensus 356 --~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~-----t~g~--~~~dl~~l~~~a~~~ 425 (590)
.++|++++ ||...++++.++.+++..|++.++...... ....+..+... ...| .++.+.+++..+..+
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 24789998 999999999999999999999887654322 11122333322 1122 256777888777765
Q ss_pred HHHhc
Q 007764 426 CIREK 430 (590)
Q Consensus 426 ~~~~~ 430 (590)
...+.
T Consensus 253 ~~~r~ 257 (284)
T TIGR02880 253 QANRL 257 (284)
T ss_pred HHHHH
Confidence 54443
No 74
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.80 E-value=4.3e-20 Score=193.38 Aligned_cols=116 Identities=56% Similarity=0.979 Sum_probs=111.3
Q ss_pred cccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh
Q 007764 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (590)
Q Consensus 473 ~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~ 552 (590)
.+.|.+.|++++|+++.++.+.+.+.+++.+++.|..+|+.+++|+|||||||||||++|+++|.+++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 553 ~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.+|+|+.++.++.+|+.|+...|+||||||+|++..
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc
Confidence 999999999999999999999999999999999853
No 75
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.79 E-value=4.6e-18 Score=169.86 Aligned_cols=176 Identities=22% Similarity=0.328 Sum_probs=133.0
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCC---CCceEEEECCCCCcHHHHHHHHHHHh-------CCeEEEEech
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANET-------GAFFFCINGP 276 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~---~~~~vLL~GppGtGKTtla~~la~~~-------~~~~~~v~~~ 276 (590)
+++++|+++++++|++++.++... ......|.. ...+++|+||||||||++|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998876433 222234443 34579999999999999999999874 2357889999
Q ss_pred hhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC-
Q 007764 277 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN- 355 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~- 355 (590)
++.+.+.|+....++.+|+.+. ++||||||+|.+....+ .......+..|+..|+... ..+++|+++...+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccC--CCEEEEecCCcchh
Confidence 9999999999999999998774 46999999999874322 1223456677888777643 3455555443322
Q ss_pred ----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCC
Q 007764 356 ----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK 393 (590)
Q Consensus 356 ----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~ 393 (590)
.++|++++ ||...+.++.++.+++.+|++..+....
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 36788887 9999999999999999999998776543
No 76
>CHL00176 ftsH cell division protein; Validated
Probab=99.74 E-value=1.5e-18 Score=190.87 Aligned_cols=112 Identities=44% Similarity=0.885 Sum_probs=105.9
Q ss_pred CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh
Q 007764 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (590)
Q Consensus 476 ~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~ 555 (590)
..++|+|++|++++++++.+.+.+ +.+++.+..++..+++|+||+||||||||++||++|.+++.+|+.+.++++.++|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468999999999999999998776 7888899999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 556 FGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 556 vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|.....++++|++|+...||||||||||++.+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 289 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR 289 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh
Confidence 999999999999999999999999999999864
No 77
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.3e-18 Score=164.10 Aligned_cols=182 Identities=26% Similarity=0.347 Sum_probs=139.9
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhh-CCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEech
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSI-GVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGP 276 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l-~i~~~~~vLL~GppGtGKTtla~~la~~~~---------~~~~~v~~~ 276 (590)
|+.+.--...++++-.+....+...+.-.+- =|...+-+||+||||||||+|++++|+.+. ...+++|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 3444444455666655554433222211111 134567899999999999999999999874 346899999
Q ss_pred hhhhhccchhHHHHHHHHHHHHhc---C--CeEEEEcccccccCCCCCC----chhHHHHHHHHHHHhhhccccCCeEEE
Q 007764 277 EIMSKLAGESESNLRKAFEEAEKN---A--PSIIFIDEIDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIV 347 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~a~~~---~--p~iL~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~v~v 347 (590)
.++++|.+++.+.+..+|++...- . -..++|||+++++..|... .....-|+++.+++.+|.++...+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999887542 2 2356799999998666321 112346899999999999999999999
Q ss_pred EeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhc
Q 007764 348 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (590)
Q Consensus 348 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~ 390 (590)
++|+|-.+.||.|+.. |-|-..++++|+...+++|++....
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 9999999999999987 9999999999999999999986543
No 78
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.4e-17 Score=161.32 Aligned_cols=178 Identities=29% Similarity=0.529 Sum_probs=135.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcC-CeEEEEcccccccCCCC
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKRE 318 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-p~iL~iDEid~l~~~~~ 318 (590)
.+-++|++|||||||||++|+.||...|..+-.+.|.++.-. -.+.-..+..+|+=+.... .-+|||||.|+++..+.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 345789999999999999999999999999888887776432 2244567889999887654 45899999999887775
Q ss_pred C-CchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC--
Q 007764 319 K-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-- 395 (590)
Q Consensus 319 ~-~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-- 395 (590)
. ..++..+..++.|+---. .....++++.+||+|.++|.++.. |++..++||.|.+++|..+|..++.++-..
T Consensus 461 ktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~ 536 (630)
T KOG0742|consen 461 KTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPA 536 (630)
T ss_pred hhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcC
Confidence 4 334444555555442222 233478888899999999999987 999999999999999999998776544211
Q ss_pred ----------------------C---ccCHHHHHHhcCCCCHHHHHHHHHHH
Q 007764 396 ----------------------D---DVDLERIAKDTHGYVGADLAALCTEA 422 (590)
Q Consensus 396 ----------------------~---~~~l~~la~~t~g~~~~dl~~l~~~a 422 (590)
. +.-+.+.|..|+||+|+++..|+...
T Consensus 537 ~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 537 TSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred CCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 0 11257788999999999998877643
No 79
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.3e-18 Score=175.93 Aligned_cols=114 Identities=41% Similarity=0.737 Sum_probs=92.5
Q ss_pred cCCccccc--ccccch-hhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc-EEEEeccc
Q 007764 475 VPNVNWED--IGGLEN-VKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-FISVKGPE 550 (590)
Q Consensus 475 ~~~v~~~~--iggl~~-vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~-~i~v~~~e 550 (590)
-|+..|++ |||++. .....+.+...-+--|+..+++|+..-+|+|||||||||||++||.+.+.++.. -=-|+|||
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 45666666 567753 333445555555556888999999999999999999999999999999999764 34579999
Q ss_pred hhhhhccchHHHHHHHHHHHhh--------CCCeEEEEcccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIAT 588 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~--------~~p~vlf~DEid~l~~ 588 (590)
.++||||+||.+||++|..|.+ +.--||+|||||++..
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK 338 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK 338 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH
Confidence 9999999999999999999863 3456999999999875
No 80
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.5e-16 Score=162.04 Aligned_cols=178 Identities=26% Similarity=0.364 Sum_probs=138.5
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccc
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG 284 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g 284 (590)
-+|+.++=-.+.++.|.+=+....+.++.+++.|..-.+|.|||||||||||+++.|+|+.++..++-++..+....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc---
Confidence 46666666667777887767767788999999999999999999999999999999999999999888876654332
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---h----HHHHHHHHHHHhhhccccCC--eEEEEeecCCCC
Q 007764 285 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---E----VERRIVSQLLTLMDGLKSRA--HVIVIGATNRPN 355 (590)
Q Consensus 285 ~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~---~----~~~~v~~~Ll~~ld~~~~~~--~v~vI~~tn~~~ 355 (590)
.+ ++.++-... ..+||+|++||.-+.-+..... + ...-.+..|++.+||+-+.. .-++|-|||..+
T Consensus 275 --~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 275 --SD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred --HH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 22 666665553 3469999999986543322111 0 11123577999999988755 567777999999
Q ss_pred CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhc
Q 007764 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (590)
Q Consensus 356 ~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~ 390 (590)
.|||||.||||.|.+|+++.-+..+-..+...++.
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999888777776654
No 81
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.71 E-value=1.6e-16 Score=149.56 Aligned_cols=182 Identities=28% Similarity=0.437 Sum_probs=119.1
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
.+.+-+++|++|+++.+..++-++....... .+-.+++||||||+||||||+.||++++..+...+++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 4567799999999999999877776432211 23468999999999999999999999999999998865422
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-----c-----------CCe
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S-----------RAH 344 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~-----------~~~ 344 (590)
. ..+..++.... ...||||||||.+-. .+.+.|+..|+... . -.+
T Consensus 89 --~----~dl~~il~~l~--~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 --A----GDLAAILTNLK--EGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --C----HHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --H----HHHHHHHHhcC--CCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1 22233344432 356999999998742 33455666665432 1 125
Q ss_pred EEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCC
Q 007764 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (590)
Q Consensus 345 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (590)
+.+||||++...+.+.|+. ||.....+..++.++..+|++.....+.+. ++....++|.++.|-.
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 7899999999999999998 999999999999999999998766655543 2334677888887754
No 82
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.4e-16 Score=170.56 Aligned_cols=162 Identities=24% Similarity=0.354 Sum_probs=109.9
Q ss_pred cccccch-HHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEec
Q 007764 207 YDDVGGV-RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (590)
Q Consensus 207 ~~~i~G~-~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v~~ 275 (590)
.+.+.|- ++.++.+.+.+.. ..+++-+|+|.||+|||.++.-+++.. +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 3445444 7777777777654 233678999999999999999998875 223455554
Q ss_pred hhhh--hhccchhHHHHHHHHHHHH-hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 276 PEIM--SKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 276 ~~l~--~~~~g~~~~~~~~~f~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
..+. .++.|+.+.+++.+..++. .+...|||+||++.+........ . .....++.....+..+.+||||.
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~------~d~~nlLkp~L~rg~l~~IGatT 324 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-A------IDAANLLKPLLARGGLWCIGATT 324 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-H------HHHHHhhHHHHhcCCeEEEeccc
Confidence 4333 3678999999999999988 45677999999999987765421 1 11223333333455689999776
Q ss_pred CCC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC
Q 007764 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (590)
Q Consensus 353 ~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~ 391 (590)
... .-||++.| || ..+.++.|+......||......
T Consensus 325 ~e~Y~k~iekdPalEr--rw-~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 325 LETYRKCIEKDPALER--RW-QLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHHHHhhCcchhh--Cc-ceeEeccCcccchhhhhhhhhhh
Confidence 322 33899988 88 45678888877665666544433
No 83
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.69 E-value=3e-17 Score=190.04 Aligned_cols=87 Identities=22% Similarity=0.418 Sum_probs=76.3
Q ss_pred ChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh----------cc---------------
Q 007764 503 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG--------------- 557 (590)
Q Consensus 503 ~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~----------vG--------------- 557 (590)
......++|+.|++|+||+||||||||.||||+|++++.+||.|.|++++++| +|
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 34455688999999999999999999999999999999999999999999765 23
Q ss_pred ----------------chHHH--HHHHHHHHhhCCCeEEEEccccccccc
Q 007764 558 ----------------ESEAN--VREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 558 ----------------ese~~--ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
++++. ||.+|+.|++.+||||||||||+|++.
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ 1747 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN 1747 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC
Confidence 33344 899999999999999999999999863
No 84
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.63 E-value=3.7e-15 Score=169.98 Aligned_cols=164 Identities=23% Similarity=0.333 Sum_probs=124.0
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh--------
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 279 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~-------- 279 (590)
+++.|+++.++.|.+++..+...+ -..+..+||+||||||||++|+++|+.++.+++.++.....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 458999999999998877543221 12345899999999999999999999999999888754321
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcc-----c--------cCCeE
Q 007764 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 345 (590)
Q Consensus 280 -~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 345 (590)
..|.|.....+...|..+....| ++||||+|.+.+..... ..+.|+..+|.. . ...++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24566666777777877765555 89999999998643322 124455555431 1 12468
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
++|+|||.++.+++++++ || ..|+++.|+.+++.+|++.+.
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 899999999999999998 89 578999999999999998764
No 85
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=1.5e-14 Score=148.24 Aligned_cols=188 Identities=23% Similarity=0.359 Sum_probs=130.5
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccch
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 285 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~ 285 (590)
+|+++.|+++++++|+.++......+ ..+.+++|+||||||||++|+++|++++..+..++++.... .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~- 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG- 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch-
Confidence 57899999999999988886432221 33568999999999999999999999988776665543221 11
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc----------------cCCeEEEEe
Q 007764 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHVIVIG 349 (590)
Q Consensus 286 ~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~v~vI~ 349 (590)
.+...+... ..+.+|||||++.+.+.. .+.|..+++... ....+.+|+
T Consensus 71 ---~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 71 ---DLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred ---hHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 122222222 346799999999885421 122344433221 112478889
Q ss_pred ecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHH
Q 007764 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 423 (590)
Q Consensus 350 ~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (590)
+|+++..+++++++ ||...+.++.|+.++..++++......... ++..+..++..+.|+.. .+..++..+.
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR-~~~~ll~~~~ 206 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPR-IANRLLRRVR 206 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc-hHHHHHHHHH
Confidence 99999999999987 998889999999999999998776543332 23447788999988774 3355555443
No 86
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.62 E-value=8.7e-16 Score=136.68 Aligned_cols=72 Identities=47% Similarity=0.881 Sum_probs=69.2
Q ss_pred eEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHhhCC-CeEEEEccccccccc
Q 007764 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQ 589 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~-p~vlf~DEid~l~~~ 589 (590)
+||+||||||||++|+.+|..++.+|+.++++++.+.|.+++++.++++|++|+... ||||||||+|++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccc
Confidence 689999999999999999999999999999999999999999999999999999988 999999999999764
No 87
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=2.1e-14 Score=148.44 Aligned_cols=193 Identities=23% Similarity=0.360 Sum_probs=135.1
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
++.+.+|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 345668999999999999998887642111 134578999999999999999999999998887777654321
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc----------------cCCe
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 344 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 344 (590)
...+..++... ..+++|||||+|.+.... .+.+...++... ....
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-----------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-----------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcchHH-----------HHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 12233333332 346799999999885321 112333333221 1134
Q ss_pred EEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHH
Q 007764 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 423 (590)
Q Consensus 345 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (590)
+.+|++|+++..+++++++ ||...+.++.|+.+++.+|++......... ++..+..++..+.|+. +.+..++....
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 7789999999999999987 998899999999999999999776554433 2334788999998876 33444444433
No 88
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.60 E-value=7.6e-16 Score=171.60 Aligned_cols=111 Identities=41% Similarity=0.864 Sum_probs=103.0
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhc
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~v 556 (590)
...|.++.|++..++.+.+.+.+ +..+..+..++...++|++|+||||||||++|+++|++++.+|+.+.++++.++|+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 56799999999999999998877 45677778888888999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 557 GESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 557 Gese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
|.++..++++|+.|+..+||||||||+|++++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~ 258 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 258 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhh
Confidence 99999999999999999999999999999864
No 89
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.60 E-value=2.5e-14 Score=137.06 Aligned_cols=183 Identities=25% Similarity=0.386 Sum_probs=137.8
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
++.+-.|++.+|+++.++++.-++....... ....++|||||||.||||||+.+|++++..+...+|+.+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 4556689999999999999988887654332 34579999999999999999999999999998888876642
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc----------------CCe
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RAH 344 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~~ 344 (590)
. ..+-.++.... ..+||||||||.+.+.. .+-|...|+.+.- -..
T Consensus 91 ~------gDlaaiLt~Le--~~DVLFIDEIHrl~~~v-----------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 P------GDLAAILTNLE--EGDVLFIDEIHRLSPAV-----------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred h------hhHHHHHhcCC--cCCeEEEehhhhcChhH-----------HHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1 12233333332 34699999999986542 2334445543321 236
Q ss_pred EEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 345 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
+.+||||.+...+...|+. ||.....+..++.++..+|+......+.+. ++....++|+++.|-..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 7899999999999999998 999999999999999999998777666654 23346788888888754
No 90
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.60 E-value=2e-14 Score=144.24 Aligned_cols=177 Identities=29% Similarity=0.460 Sum_probs=125.2
Q ss_pred cCCCCCcccccchHHHHH---HHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q 007764 201 RLDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~---~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~ 277 (590)
.+.+-++++++|++..+. -|+++++. ..-.+++|||||||||||+|+.||+.++..|..+++-.
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 345678999999998863 35666654 23458999999999999999999999999999988632
Q ss_pred hhhhccchhHHHHHHHHHHHHhc----CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeec--
Q 007764 278 IMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT-- 351 (590)
Q Consensus 278 l~~~~~g~~~~~~~~~f~~a~~~----~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~t-- 351 (590)
..-+.++.++++++.. ...|||+||||.+-...+ ..|+..+ ..+.+++||+|
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~v----E~G~iilIGATTE 141 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHV----ENGTIILIGATTE 141 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhh----cCCeEEEEeccCC
Confidence 2345788889888543 357999999998854332 3344444 45678888866
Q ss_pred CCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHh----cCCCC----CCccCHHHHHHhcCCCCHHHH
Q 007764 352 NRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT----KNMKL----SDDVDLERIAKDTHGYVGADL 415 (590)
Q Consensus 352 n~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~----~~~~~----~~~~~l~~la~~t~g~~~~dl 415 (590)
|+--.+.+++++ |. +.+++.+.+.++...+++... +.+.- -++..+..++..+.|-..+-+
T Consensus 142 NPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 142 NPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred CCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 444578999998 65 668888899888888887521 22220 123345667777776554443
No 91
>CHL00181 cbbX CbbX; Provisional
Probab=99.59 E-value=8.6e-16 Score=154.54 Aligned_cols=104 Identities=27% Similarity=0.420 Sum_probs=87.5
Q ss_pred cccccccchhhhcccceeecccCChhhhhhcCCCCC---ceeEEECCCCCChhHHHHHHHHHhC-------CcEEEEecc
Q 007764 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 549 (590)
Q Consensus 480 ~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~---~gvLL~GppGtGKTtLAkalA~~~~-------~~~i~v~~~ 549 (590)
+.+++|++++|+++.+.+.| +.......+.|+.++ .+++|+||||||||++|+++|.++. .+|+.++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 35799999999999999877 334455566776543 3599999999999999999999862 359999999
Q ss_pred chhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 550 el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
++.++|+|+++..++++|++|.. +||||||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~ 135 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLY 135 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhc
Confidence 99999999999999999999864 599999999984
No 92
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.59 E-value=8e-16 Score=153.70 Aligned_cols=105 Identities=30% Similarity=0.477 Sum_probs=87.1
Q ss_pred cccccccchhhhcccceeecccCChhhhhhcCCCCC---ceeEEECCCCCChhHHHHHHHHHh-------CCcEEEEecc
Q 007764 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 549 (590)
Q Consensus 480 ~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~---~gvLL~GppGtGKTtLAkalA~~~-------~~~~i~v~~~ 549 (590)
.+++.|++++|+.+++.+.|.... ....+.|+.++ .+++|+||||||||++|+++|.++ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 357899999999999998887554 23334455533 469999999999999999999875 3479999999
Q ss_pred chhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 550 el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+++++|+|+++..++++|++|.. +||||||+|.|.+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~ 119 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLAR 119 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccC---CEEEEechhhhcc
Confidence 99999999999999999998863 5999999999863
No 93
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.58 E-value=1.1e-15 Score=153.94 Aligned_cols=102 Identities=26% Similarity=0.443 Sum_probs=88.8
Q ss_pred cccccchhhhcccceeecccCChhhhhhcCCCC---CceeEEECCCCCChhHHHHHHHHHhC-------CcEEEEeccch
Q 007764 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPEL 551 (590)
Q Consensus 482 ~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~---~~gvLL~GppGtGKTtLAkalA~~~~-------~~~i~v~~~el 551 (590)
+++|++++|+++.+.+.| +.+...+.+.|+.+ +.+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 579999999999999888 55666777778764 44799999999999999999998873 36999999999
Q ss_pred hhhhccchHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 552 ~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
+++|+|+++..++++|++|.. ++|||||++.|.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~ 134 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLY 134 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhc
Confidence 999999999999999999854 599999999884
No 94
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.7e-13 Score=144.83 Aligned_cols=167 Identities=25% Similarity=0.348 Sum_probs=132.1
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech------hh
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EI 278 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~------~l 278 (590)
+--.|--|+++.+++|.|++....+.+. ..+.-+||+||||+|||+|++.||+.++..|+.++-. ++
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEI 392 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEI 392 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHh
Confidence 3345688999999999999986433321 3456899999999999999999999999999988753 34
Q ss_pred hh---hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-------------cC
Q 007764 279 MS---KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SR 342 (590)
Q Consensus 279 ~~---~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~ 342 (590)
.+ .|+|....++-+-+..+....| ++++||||.+..+..+..+ +.|+..+|.-. .-
T Consensus 393 RGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 393 RGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccch
Confidence 33 5888888888888888888888 8899999999877654443 33444444321 12
Q ss_pred CeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 343 AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 343 ~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
.+|++|+|.|..+.|+.+|+. |. ..|+++-+++.+.++|-+.|+
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 479999999999999999987 77 779999999999999998774
No 95
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.9e-14 Score=150.20 Aligned_cols=165 Identities=24% Similarity=0.372 Sum_probs=130.0
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech------hhhh
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIMS 280 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~------~l~~ 280 (590)
-+|--||++.+++|-|++...... |-..++-++|+||||+|||++++.||..++..|+.++-. ++.+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 457889999999999999864322 235678899999999999999999999999999887643 3332
Q ss_pred ---hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-------------cCCe
Q 007764 281 ---KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAH 344 (590)
Q Consensus 281 ---~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~ 344 (590)
.|+|....++-+.+.......| +++|||+|.+....+...+ +.|+.++|... .-.+
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccccccchhh
Confidence 5788888888888888877888 8889999999854433322 44555555322 2347
Q ss_pred EEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 345 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
|++|+|.|..+.|+++|+. |. ..|+++=+..++...|-+.|+
T Consensus 555 VLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 9999999999999999997 77 678999999999999988764
No 96
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.46 E-value=3.8e-13 Score=110.06 Aligned_cols=80 Identities=39% Similarity=0.586 Sum_probs=66.0
Q ss_pred eEEEccccCC---CCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCC--CCCeEEeCHHHHhhccccCCCe
Q 007764 30 RLVVDEAIND---DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTC--EEPKIRMNKVVRSNLRVRLGDV 104 (590)
Q Consensus 30 ~~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~r~~~~~~~~~~ 104 (590)
+|+|.++..+ ++++|+|||+.|++||+..||+|+|.|. + ++++.+|+.... +.+.|+|+..+|+|+|+++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g~-~-~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISGK-R-KTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEETT-T-EEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeCC-c-eEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 5788888743 8999999999999999999999999994 3 488999986543 7899999999999999999999
Q ss_pred EEEEEcc
Q 007764 105 VSVHQCA 111 (590)
Q Consensus 105 v~i~~~~ 111 (590)
|+|+++.
T Consensus 79 V~V~~~~ 85 (87)
T PF02359_consen 79 VTVRPYD 85 (87)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 9999975
No 97
>PRK04195 replication factor C large subunit; Provisional
Probab=99.45 E-value=2.2e-12 Score=140.01 Aligned_cols=188 Identities=29% Similarity=0.382 Sum_probs=129.8
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
..+.+++++.|.+++++.|++++..... -.++.++||+||||||||++|+++|++++..++.+++++....
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~---------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~ 78 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK---------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA 78 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH
Confidence 4566789999999999999999864221 1236799999999999999999999999999999988764321
Q ss_pred ccchhHHHHHHHHHHHHh------cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC
Q 007764 282 LAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~------~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~ 355 (590)
..++.+...+.. ..+.+|+|||+|.+..+.+ ......|+..++. ....+|.++|.+.
T Consensus 79 ------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~~~ 141 (482)
T PRK04195 79 ------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTANDPY 141 (482)
T ss_pred ------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccCcc
Confidence 123333332222 2467999999998865321 1233556666652 2234555778887
Q ss_pred CCch-hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHH
Q 007764 356 SIDP-ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAAL 418 (590)
Q Consensus 356 ~ld~-al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l 418 (590)
.+.+ .+++ ....+.++.|+..+...+++..+....+. ++..+..++..+.|-....+..+
T Consensus 142 ~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 142 DPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred ccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7776 5654 34789999999999999998776544332 33457888888877555444433
No 98
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.8e-12 Score=135.10 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=125.6
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~----------- 269 (590)
+..+-+|++++|++..++.|+.++... .-+..+||+||+||||||+|+.+|+.++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 345678999999999999998887642 123468999999999999999999998652
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHH
Q 007764 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (590)
Q Consensus 270 -------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (590)
++.+++.. ...-..++.+.+.+ ..+...|+||||+|.+.. ...+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHH
Confidence 22222211 01122344444333 234557999999998742 345667
Q ss_pred HHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCC
Q 007764 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (590)
Q Consensus 333 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (590)
+..++. ....+++|.+|+.++.+.+.+++ |+ ..+.+..++..+..+.++..+....+. ++..+..++..+.|-.
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChH
Confidence 777765 33477888888889999999987 77 567888888877777777665543332 3445788888888876
Q ss_pred HHHHH
Q 007764 412 GADLA 416 (590)
Q Consensus 412 ~~dl~ 416 (590)
...+.
T Consensus 217 RdAL~ 221 (484)
T PRK14956 217 RDMLS 221 (484)
T ss_pred HHHHH
Confidence 55443
No 99
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.6e-12 Score=136.42 Aligned_cols=177 Identities=18% Similarity=0.253 Sum_probs=121.3
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------- 268 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~------------- 268 (590)
..+-+|++++|++..++.|+.++... ..+..+||+|||||||||+|+++|+.++.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 45678999999999988888877642 22456999999999999999999998764
Q ss_pred -----------eEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 269 -----------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 269 -----------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
.++.+++..- ..-..++.+.+.+.. ....++||||+|.+.. ...+.|+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LL 138 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALL 138 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHH
Confidence 2344443211 112334555444332 2346999999998731 2235566
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC--CCCCCccCHHHHHHhcCCCC
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGYV 411 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~--~~~~~~~~l~~la~~t~g~~ 411 (590)
..++... ..+++|++|+.+..+++++++ |+ ..+.+..++..+...+++..+.. ..+. +..+..++..+.|-.
T Consensus 139 k~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~-~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 139 KTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEID-REALSFIAKRASGGL 212 (472)
T ss_pred HHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCH
Confidence 6666532 356666666677789999987 77 57999999999988888876543 3333 334777888777654
Q ss_pred HH
Q 007764 412 GA 413 (590)
Q Consensus 412 ~~ 413 (590)
..
T Consensus 213 R~ 214 (472)
T PRK14962 213 RD 214 (472)
T ss_pred HH
Confidence 44
No 100
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=3.7e-12 Score=139.01 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=127.2
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+-+|++++|++..++.|+.++... +.+..+||+||+|+||||+++++++.+++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 35668999999999999998887642 123468999999999999999999988642
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
+++++... ...-..++.+++.+. .....|+||||+|.|.. ...+.|+
T Consensus 78 sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALL 140 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAML 140 (830)
T ss_pred HHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHH
Confidence 23332221 111234555555443 23456999999998832 2346677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..|+... .++.+|.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+....+. ++..+..+++.+.|-..
T Consensus 141 KtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 141 KTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 7776543 367777788888999888887 77 788999999998888887665443332 34457788888888765
Q ss_pred HHHHH
Q 007764 413 ADLAA 417 (590)
Q Consensus 413 ~dl~~ 417 (590)
.-+..
T Consensus 216 dALsL 220 (830)
T PRK07003 216 DALSL 220 (830)
T ss_pred HHHHH
Confidence 54433
No 101
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.43 E-value=2.3e-12 Score=145.82 Aligned_cols=163 Identities=22% Similarity=0.327 Sum_probs=118.8
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh--------
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 279 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~-------- 279 (590)
.+..|+++.++.|.+++...... +-..+..++|+||||+|||++++.+|+.++.+++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 45899999999998888753221 113567899999999999999999999999999888754332
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcc-------------ccCCeE
Q 007764 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-------------KSRAHV 345 (590)
Q Consensus 280 -~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-------------~~~~~v 345 (590)
..|.|.....+...+..+....| ++++||+|.+.+..... ..+.|+..+|.- ....++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCce
Confidence 13455555555555555443444 89999999987653321 124566666531 122578
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
++|+|+|.. .++++|+. |+ ..|.+..++.++..+|.+.++
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhh
Confidence 999999887 59999997 99 578999999999999988765
No 102
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.42 E-value=9.7e-14 Score=130.82 Aligned_cols=97 Identities=30% Similarity=0.519 Sum_probs=63.0
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhc
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~v 556 (590)
.-+++++.|+++++..+.-.+..... .-.+..+++|||||||||||||+.+|++++.+|....|+.+ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i-~--- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI-E--- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh-h---
Confidence 34789999999999887655432211 12345689999999999999999999999999999998753 1
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 557 Gese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
-...+..++..... ..|||+|||+++-+.
T Consensus 88 --k~~dl~~il~~l~~--~~ILFIDEIHRlnk~ 116 (233)
T PF05496_consen 88 --KAGDLAAILTNLKE--GDILFIDEIHRLNKA 116 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC--HH
T ss_pred --hHHHHHHHHHhcCC--CcEEEEechhhccHH
Confidence 12445566665544 469999999998764
No 103
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.42 E-value=6.4e-12 Score=135.40 Aligned_cols=158 Identities=25% Similarity=0.408 Sum_probs=108.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCC
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~ 316 (590)
..+++||||+|+|||+|++++++++ +..++++++.++...+..........-|.... ..+.+|+|||++.+..+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC
Confidence 3579999999999999999999987 45688999988876554433221112232222 24679999999988644
Q ss_pred CCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCC---CchhhhccCCCc--eEEEecCCCHHHHHHHHHHHhcC
Q 007764 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN 391 (590)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~Il~~~~~~ 391 (590)
.. ....++..++.+......+++++...|.. +++.+++ ||. ..+++..|+.+.|..|++.....
T Consensus 227 ~~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 ER---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred HH---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 21 22345555555544445566666666655 5678876 774 57999999999999999987764
Q ss_pred C--CCCCccCHHHHHHhcCCCCH
Q 007764 392 M--KLSDDVDLERIAKDTHGYVG 412 (590)
Q Consensus 392 ~--~~~~~~~l~~la~~t~g~~~ 412 (590)
. .+.+ ..++.++....|-..
T Consensus 296 ~~~~l~~-e~l~~ia~~~~~~~R 317 (450)
T PRK00149 296 EGIDLPD-EVLEFIAKNITSNVR 317 (450)
T ss_pred cCCCCCH-HHHHHHHcCcCCCHH
Confidence 3 3333 347777777766433
No 104
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=5.2e-12 Score=132.13 Aligned_cols=185 Identities=21% Similarity=0.317 Sum_probs=125.4
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------------
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 269 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~---------------- 269 (590)
.|++|+|++..++.|++++..+..++. .++...+..+||+||+|+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 478999999999999999987643322 2233456789999999999999999999876432
Q ss_pred -------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhc
Q 007764 270 -------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (590)
Q Consensus 270 -------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (590)
+..+.... . .-.-..++.+++.+.. ....|+||||+|.+.+. ..+.|+..++.
T Consensus 80 ~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc
Confidence 11221110 1 1122346677766543 33469999999988422 23667777775
Q ss_pred cccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHH
Q 007764 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAAL 418 (590)
Q Consensus 339 ~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l 418 (590)
... ..+++++|++ ++.+.+.+++ |+ ..+.++.|+.++..+.|.... ... ......++..++|..+..+.-+
T Consensus 144 p~~-~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 144 PPP-RTVWLLCAPS-PEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCC-CCeEEEEECC-hHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 433 3444554444 7889999987 77 789999999999887776322 222 2346678889999888765443
No 105
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.41 E-value=1.6e-11 Score=129.21 Aligned_cols=203 Identities=23% Similarity=0.319 Sum_probs=126.9
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechhh
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEI 278 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~---------~~~~~v~~~~l 278 (590)
+++.|.+++++.|..++.-.+.. ..+.+++|+||||||||++++++++.+. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46999999999998887643211 3356899999999999999999987653 46788887543
Q ss_pred hh----------hcc--c--------hhHHHHHHHHHHHH-hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhh
Q 007764 279 MS----------KLA--G--------ESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (590)
Q Consensus 279 ~~----------~~~--g--------~~~~~~~~~f~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (590)
.+ ... + ...+....++.... ...+.+|+|||+|.+.... ..++.+|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 21 110 1 11223344444443 2456799999999997321 123445554422
Q ss_pred c-cccCCeEEEEeecCCCC---CCchhhhccCCCc-eEEEecCCCHHHHHHHHHHHhcC-CC--CCCccCHHH---HHHh
Q 007764 338 G-LKSRAHVIVIGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN-MK--LSDDVDLER---IAKD 406 (590)
Q Consensus 338 ~-~~~~~~v~vI~~tn~~~---~ld~al~r~gRf~-~~i~i~~P~~~~r~~Il~~~~~~-~~--~~~~~~l~~---la~~ 406 (590)
. .....++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..... .. ..++..+.. ++..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 1 11235788888998875 46777765 664 67999999999999999877642 11 112222333 3344
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhc
Q 007764 407 THGYVGADLAALCTEAALQCIREK 430 (590)
Q Consensus 407 t~g~~~~dl~~l~~~a~~~~~~~~ 430 (590)
+.|..... ..+|..|...+..+.
T Consensus 236 ~~Gd~R~a-l~~l~~a~~~a~~~~ 258 (365)
T TIGR02928 236 EHGDARKA-IDLLRVAGEIAEREG 258 (365)
T ss_pred hcCCHHHH-HHHHHHHHHHHHHcC
Confidence 45654433 456666665555443
No 106
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.6e-12 Score=138.56 Aligned_cols=180 Identities=16% Similarity=0.237 Sum_probs=125.0
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+-+|++|+|++..++.|++++..- .-+..+||+||+|+||||+++.+++.+++.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 45678999999999999999888642 223568999999999999999999998651
Q ss_pred -----------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhHHHHH
Q 007764 270 -----------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRI 328 (590)
Q Consensus 270 -----------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v 328 (590)
++.+++.. ...-+.++.+++.. ..+...|+||||+|.|.. ..
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~A 140 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------HA 140 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------HH
Confidence 22222211 11123455555443 234457999999998732 33
Q ss_pred HHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhc
Q 007764 329 VSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT 407 (590)
Q Consensus 329 ~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t 407 (590)
.+.|+..|+... .++.+|.+|+.++.|.+.+++ |+ ..+.|..++.++..+.|+..+....+. ++..+..++..+
T Consensus 141 aNALLKTLEEPP--~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhccCC--CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 466777776533 366777788888899999987 76 778899999888888777655433332 223467778888
Q ss_pred CCCCHHHH
Q 007764 408 HGYVGADL 415 (590)
Q Consensus 408 ~g~~~~dl 415 (590)
+|-...-+
T Consensus 216 ~Gs~RdAL 223 (700)
T PRK12323 216 QGSMRDAL 223 (700)
T ss_pred CCCHHHHH
Confidence 87765443
No 107
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.41 E-value=8.9e-12 Score=132.65 Aligned_cols=168 Identities=26% Similarity=0.407 Sum_probs=109.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCC
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~ 316 (590)
..+++||||+|+|||+|++++++++ +..++++++.++...+...........|.... ..+.+|+|||++.+..+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 4579999999999999999999886 56788999888766543322211111122211 23579999999988643
Q ss_pred CCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCC---CchhhhccCCCc--eEEEecCCCHHHHHHHHHHHhcC
Q 007764 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN 391 (590)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~Il~~~~~~ 391 (590)
. .....++..++........++++++..|.. +++.+++ ||. ..+.++.|+.+.|..|++..+..
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 112345555555544445566666666654 4567776 775 57999999999999999987764
Q ss_pred CCCC-CccCHHHHHHhcCCCCHHHHHHHHHHH
Q 007764 392 MKLS-DDVDLERIAKDTHGYVGADLAALCTEA 422 (590)
Q Consensus 392 ~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a 422 (590)
..+. ++..+..++....+-. +++...+...
T Consensus 284 ~~~~l~~e~l~~ia~~~~~~~-r~l~~~l~~l 314 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRSNV-RELEGALNRL 314 (405)
T ss_pred cCCCCCHHHHHHHHHhcCCCH-HHHHHHHHHH
Confidence 4432 3344777887776543 4444444433
No 108
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.40 E-value=7.6e-12 Score=133.23 Aligned_cols=173 Identities=28% Similarity=0.443 Sum_probs=119.2
Q ss_pred CCCCCcccccchHHHHHH---HHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 202 LDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~---l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
..+-++++++|.++.+.. +++++.. ....+++|+|||||||||+|+++++.++..++.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 345678899999998766 7777754 223489999999999999999999999999998887532
Q ss_pred hhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecC--
Q 007764 279 MSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN-- 352 (590)
Q Consensus 279 ~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn-- 352 (590)
....++.+++.+. .+...+|||||+|.+... ..+.|+..++. ..+++|++|+
T Consensus 73 -------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 -------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred -------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCCCC
Confidence 1233445555443 235679999999987421 22445555542 4566666553
Q ss_pred CCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCC-----CCCCccCHHHHHHhcCCCCHH
Q 007764 353 RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM-----KLSDDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 353 ~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~-----~~~~~~~l~~la~~t~g~~~~ 413 (590)
+...+++++++ |+ ..+.++.++.++...+++..+... .+ .+..+..++..+.|....
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~Gd~R~ 192 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANGDARR 192 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCCCHHH
Confidence 34478889987 77 778999999999988888654331 22 223356777777665443
No 109
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=2.3e-11 Score=129.35 Aligned_cols=204 Identities=24% Similarity=0.307 Sum_probs=127.2
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhh--
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIM-- 279 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~~l~-- 279 (590)
.+.+.|-++++++|...+.-.+.. ..+.+++|+||||||||++++.+++.+ +..++++++....
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 355889999999998887542211 335679999999999999999999876 4668888885332
Q ss_pred --------hhccc--------hhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccC
Q 007764 280 --------SKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR 342 (590)
Q Consensus 280 --------~~~~g--------~~~~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~ 342 (590)
....+ ...+.+..+.+.... ..+.+|+|||+|.+..... ...+..|+.+++....
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~~- 171 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYPG- 171 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccCC-
Confidence 11111 112223333333332 3568999999999872211 1234555555554432
Q ss_pred CeEEEEeecCCCC---CCchhhhccCCC-ceEEEecCCCHHHHHHHHHHHhcCC---CCCCccCHHHHHHhcCCCCH--H
Q 007764 343 AHVIVIGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIAKDTHGYVG--A 413 (590)
Q Consensus 343 ~~v~vI~~tn~~~---~ld~al~r~gRf-~~~i~i~~P~~~~r~~Il~~~~~~~---~~~~~~~l~~la~~t~g~~~--~ 413 (590)
.++.+|+++|..+ .+++.+.+ || ...+.+++++.++..+|++.+.... ...++..++.+++.+.+..| +
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r 249 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDAR 249 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHH
Confidence 3677888887664 45666665 44 3578999999999999998776431 11233345666666633222 2
Q ss_pred HHHHHHHHHHHHHHHh
Q 007764 414 DLAALCTEAALQCIRE 429 (590)
Q Consensus 414 dl~~l~~~a~~~~~~~ 429 (590)
....+|..|...+..+
T Consensus 250 ~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 250 VAIDLLRRAGLIAERE 265 (394)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3345666665555443
No 110
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.39 E-value=2.4e-11 Score=116.34 Aligned_cols=167 Identities=22% Similarity=0.338 Sum_probs=120.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~ 277 (590)
.++.+.++++.|++.|++.|.+-....+.. .+..++||+|+.|||||++++++..++ |..++.+...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 456789999999999999997766554322 467899999999999999999999876 56678887666
Q ss_pred hhhhccchhHHHHHHHHHHHH-hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--cCCeEEEEeecCCC
Q 007764 278 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRP 354 (590)
Q Consensus 278 l~~~~~g~~~~~~~~~f~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~v~vI~~tn~~ 354 (590)
+.. +..+++..+ ...+-|||+|++.+= ..+ .-...|...|+|-. ...+|++.+|+|+.
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLsFe--~~d--------~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLSFE--EGD--------TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCCCC--CCc--------HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 543 233444433 334679999997632 111 12356667777643 24589999999987
Q ss_pred CCCch---------------------hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC
Q 007764 355 NSIDP---------------------ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS 395 (590)
Q Consensus 355 ~~ld~---------------------al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~ 395 (590)
..+.+ .+.-..||.-.+.|..|+.++.++|++.++....+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 53322 222235999999999999999999999988765544
No 111
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.38 E-value=1.4e-11 Score=121.66 Aligned_cols=191 Identities=25% Similarity=0.399 Sum_probs=124.3
Q ss_pred CCCCCcccccchHHHHHH---HHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEec
Q 007764 202 LDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCING 275 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~---l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~---~~~v~~ 275 (590)
..+-+++|.+|+++.+.+ |+.+++. ..-..++|+||||||||+||+.|+.....+ |+.+++
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 345677888888877554 4444443 223479999999999999999999987655 566554
Q ss_pred hhhhhhccchhHHHHHHHHHHHHh-----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 276 PEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 276 ~~l~~~~~g~~~~~~~~~f~~a~~-----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
.. .....+|.+|+.+.+ ....|||||||+.+-...+ ..|+- ....+.|++||+
T Consensus 199 t~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP----~VE~G~I~lIGA 256 (554)
T KOG2028|consen 199 TN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLP----HVENGDITLIGA 256 (554)
T ss_pred cc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccc----eeccCceEEEec
Confidence 22 234567888988865 3568999999998743322 12222 234568889987
Q ss_pred cC--CCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhc----------CCCC----CCccCHHHHHHhcCCCCHHH
Q 007764 351 TN--RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK----------NMKL----SDDVDLERIAKDTHGYVGAD 414 (590)
Q Consensus 351 tn--~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~----------~~~~----~~~~~l~~la~~t~g~~~~d 414 (590)
|. +.-.+..+|.+ |+ +++.+..........||..-.. .++. -++..++.++..+.|-....
T Consensus 257 TTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 257 TTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 64 44467788877 66 5566666666666666654211 1221 12334778888888887777
Q ss_pred HHHHHHHHHHHHHHhc
Q 007764 415 LAALCTEAALQCIREK 430 (590)
Q Consensus 415 l~~l~~~a~~~~~~~~ 430 (590)
+..|--.+.+.+.+..
T Consensus 334 LN~Lems~~m~~tr~g 349 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRSG 349 (554)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 7666655555555544
No 112
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2e-13 Score=132.65 Aligned_cols=105 Identities=30% Similarity=0.514 Sum_probs=77.0
Q ss_pred cccccccchhhhcccceeecccCChhhhhhcCC-----CCCceeEEECCCCCChhHHHHHHHHHhCC---------cEEE
Q 007764 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGM-----SPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFIS 545 (590)
Q Consensus 480 ~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~-----~~~~gvLL~GppGtGKTtLAkalA~~~~~---------~~i~ 545 (590)
|+.+.--.++|+.|...+...+ .|.+.+. .-.+-+||+||||||||+|+|+||+.+.. -.|.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l----~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASAL----LFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHH----HHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5544444566766655443322 2222222 23445999999999999999999999843 4899
Q ss_pred EeccchhhhhccchHHHHHHHHHHHhh-----CCCeEEEEcccccccc
Q 007764 546 VKGPELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 546 v~~~el~~~~vGese~~ir~~f~~Ar~-----~~p~vlf~DEid~l~~ 588 (590)
++...++|||++||-+.|.++|++... ...-.++|||+|||+.
T Consensus 217 inshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~ 264 (423)
T KOG0744|consen 217 INSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAA 264 (423)
T ss_pred EehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHH
Confidence 999999999999999999999998763 2233567999999974
No 113
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.37 E-value=1.5e-11 Score=134.24 Aligned_cols=198 Identities=25% Similarity=0.381 Sum_probs=125.6
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEE
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFF 271 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~ 271 (590)
..+.+|+++.|.+..++.++..+.. ..+.++||+||||||||++|+++.... +.+|+
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 4567899999999999999865432 235689999999999999999997642 35688
Q ss_pred EEechhh-------hhhccchhHHHH---HHHHH----------HHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHH
Q 007764 272 CINGPEI-------MSKLAGESESNL---RKAFE----------EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (590)
Q Consensus 272 ~v~~~~l-------~~~~~g~~~~~~---~~~f~----------~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (590)
.++|... .....+...... ...|. ........+|||||++.+.+. ..+.
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q~~ 194 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QMNK 194 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HHHH
Confidence 8887531 111111000000 00000 011223469999999988532 2234
Q ss_pred HHHhhhccc--------------------------cCCe-EEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHH
Q 007764 332 LLTLMDGLK--------------------------SRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEV 384 (590)
Q Consensus 332 Ll~~ld~~~--------------------------~~~~-v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~I 384 (590)
|+..++.-. .... .++.+||+.++.+++++++ |+ ..+.++.++.++..+|
T Consensus 195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~I 271 (531)
T TIGR02902 195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEI 271 (531)
T ss_pred HHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHH
Confidence 444442210 0112 3445567789999999998 77 5788999999999999
Q ss_pred HHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 007764 385 LRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIR 428 (590)
Q Consensus 385 l~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~ 428 (590)
++..++..... ++..++.++..+ +.++++.++++.++..+..
T Consensus 272 l~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 272 AKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALG 314 (531)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhh
Confidence 99877655433 223345555433 3678888888888765543
No 114
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.36 E-value=6.1e-12 Score=129.47 Aligned_cols=176 Identities=29% Similarity=0.448 Sum_probs=122.3
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccc-h
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-E 285 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~-i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~-~~~g-~ 285 (590)
.|.|+++.++.+..++...++...+...+. -.++.++||+||||||||++++++|..++.+|+.+++.++.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 399999999999777765433222211111 124589999999999999999999999999999999876653 4555 4
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 007764 286 SESNLRKAFEEA-------------------------------------------------------------------- 297 (590)
Q Consensus 286 ~~~~~~~~f~~a-------------------------------------------------------------------- 297 (590)
.+..++.+|+.+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 445555444443
Q ss_pred -----------------------------------------------------------------------HhcCCeEEE
Q 007764 298 -----------------------------------------------------------------------EKNAPSIIF 306 (590)
Q Consensus 298 -----------------------------------------------------------------------~~~~p~iL~ 306 (590)
...+..|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012346999
Q ss_pred EcccccccCCCCCCchhHH-HHHHHHHHHhhhccc--------cCCeEEEEeec----CCCCCCchhhhccCCCceEEEe
Q 007764 307 IDEIDSIAPKREKTHGEVE-RRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDI 373 (590)
Q Consensus 307 iDEid~l~~~~~~~~~~~~-~~v~~~Ll~~ld~~~--------~~~~v~vI~~t----n~~~~ld~al~r~gRf~~~i~i 373 (590)
|||+|.++.+.......+. .-+.+.|+.++++-. ...++++|++- ..|.++=|.|. |||+..+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 9999999976532222222 346677888887632 23467777643 34566667776 599999999
Q ss_pred cCCCHHHHHHHHH
Q 007764 374 GVPDEVGRLEVLR 386 (590)
Q Consensus 374 ~~P~~~~r~~Il~ 386 (590)
..++.+...+||.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999984
No 115
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=2.1e-11 Score=125.58 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=117.9
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 275 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~-----~~~~~v~~ 275 (590)
+..+-+++++.|.++.++.|+.++... ...+++|+||||||||++|+++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 345678999999999999998876542 123699999999999999999999972 23566666
Q ss_pred hhhhhhccchhHHHHHHHHHHHH-------hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEE
Q 007764 276 PEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVI 348 (590)
Q Consensus 276 ~~l~~~~~g~~~~~~~~~f~~a~-------~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI 348 (590)
++..+. ..++..+.... .....+++|||+|.+... ..+.|+..++.... ...++
T Consensus 73 sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 73 SDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred cccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccC--CceEE
Confidence 543221 12333222211 123579999999987432 12445555654333 23345
Q ss_pred eecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHH
Q 007764 349 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 349 ~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~ 413 (590)
.+||.+..+.+++++ |+ ..+.++.|+.++....+...++...+. ++..+..++..+.|-...
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 577777788888887 65 578999999999988888665433322 234477777777764443
No 116
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.36 E-value=4.3e-11 Score=117.03 Aligned_cols=187 Identities=18% Similarity=0.279 Sum_probs=113.8
Q ss_pred CCcccc--cchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q 007764 205 VGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM 279 (590)
Q Consensus 205 ~~~~~i--~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~ 279 (590)
.+|++. ++.+..++.+++++.. ..+.+++|+||+|||||++|+++++.. +.+++++++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 344444 4567777888776532 346789999999999999999999876 4678889988776
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCc-
Q 007764 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID- 358 (590)
Q Consensus 280 ~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld- 358 (590)
... ..++... ....+|+|||++.+..... ....|..+++........++++++..+..++
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 432 1222222 2345999999998753210 1234444444433333344454444444332
Q ss_pred --hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007764 359 --PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAAL 424 (590)
Q Consensus 359 --~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (590)
+.+.+...+...+.++.|+.+++..+++.......+. ++..+..++.... -...++..++.....
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDR 207 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 6666522235789999999999999998765433322 2233566666433 234455666555443
No 117
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=2.3e-11 Score=129.90 Aligned_cols=157 Identities=20% Similarity=0.359 Sum_probs=103.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q 007764 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~ 317 (590)
.+++||||+|+|||+|++++++++ +..++++++.++...+.......-..-|.......+.+|+|||++.+....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999985 456888998887665433221111112322222357899999999886432
Q ss_pred CCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC---chhhhccCCC--ceEEEecCCCHHHHHHHHHHHhc--
Q 007764 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTK-- 390 (590)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l---d~al~r~gRf--~~~i~i~~P~~~~r~~Il~~~~~-- 390 (590)
. ....++..++.+......+++++.+.|..+ .+.+.+ || ...+.+.+|+.+.|..|++....
T Consensus 211 ~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~ 279 (440)
T PRK14088 211 G---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIE 279 (440)
T ss_pred H---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhc
Confidence 1 123455555555555555666666676654 455665 55 46788999999999999997765
Q ss_pred CCCCCCccCHHHHHHhcCCCC
Q 007764 391 NMKLSDDVDLERIAKDTHGYV 411 (590)
Q Consensus 391 ~~~~~~~~~l~~la~~t~g~~ 411 (590)
++.++++ .+..++....+-.
T Consensus 280 ~~~l~~e-v~~~Ia~~~~~~~ 299 (440)
T PRK14088 280 HGELPEE-VLNFVAENVDDNL 299 (440)
T ss_pred CCCCCHH-HHHHHHhccccCH
Confidence 3444333 3777777776543
No 118
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.7e-11 Score=131.15 Aligned_cols=178 Identities=17% Similarity=0.225 Sum_probs=121.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+-+|++++|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 35678999999999999998888642 224578999999999999999999998642
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++..- ..-..+|.+...+. .+...|+||||+|.+-. ...+.|+
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHH
Confidence 233333211 12234555555432 23457999999998732 2345677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+....+...+...... ++..+..++..+.|-.+
T Consensus 140 KtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 140 KTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLR 214 (702)
T ss_pred HHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 7777543 345666677777778877775 66 678899999988888877665443332 33447778888777544
Q ss_pred H
Q 007764 413 A 413 (590)
Q Consensus 413 ~ 413 (590)
.
T Consensus 215 d 215 (702)
T PRK14960 215 D 215 (702)
T ss_pred H
Confidence 3
No 119
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.34 E-value=6.8e-12 Score=129.23 Aligned_cols=176 Identities=28% Similarity=0.441 Sum_probs=123.1
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccc-h
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-E 285 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i-~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~-~~~g-~ 285 (590)
.|.|+++.++.+..++...++...+...+.. ..+.++||+||||||||++|++||+.++.+|+.+++.++.. .|.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3999999999998777543222211111110 13579999999999999999999999999999999887774 4666 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 007764 286 SESNLRKAFEEAE------------------------------------------------------------------- 298 (590)
Q Consensus 286 ~~~~~~~~f~~a~------------------------------------------------------------------- 298 (590)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4455555554440
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 007764 299 -----------------------------------------------------------------------KNAPSIIFI 307 (590)
Q Consensus 299 -----------------------------------------------------------------------~~~p~iL~i 307 (590)
...-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred cccccccCCCCCCchhHH-HHHHHHHHHhhhccc--------cCCeEEEEeec----CCCCCCchhhhccCCCceEEEec
Q 007764 308 DEIDSIAPKREKTHGEVE-RRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDIG 374 (590)
Q Consensus 308 DEid~l~~~~~~~~~~~~-~~v~~~Ll~~ld~~~--------~~~~v~vI~~t----n~~~~ld~al~r~gRf~~~i~i~ 374 (590)
||||.++...+.....+. .-+.+.|+.++++-. ...++++|++- ..|.++-|.|. |||+..+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 999999977542222222 346677888887632 23467777642 34566778887 5999999999
Q ss_pred CCCHHHHHHHHH
Q 007764 375 VPDEVGRLEVLR 386 (590)
Q Consensus 375 ~P~~~~r~~Il~ 386 (590)
.++.+...+||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999999984
No 120
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4.2e-11 Score=133.37 Aligned_cols=181 Identities=17% Similarity=0.244 Sum_probs=123.0
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE----------
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~---------- 270 (590)
+..+.+|++|.|.+..++.|+.++... +-+..+||+||+||||||+|+++|+.+++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 345678999999999999998887642 1234579999999999999999999986531
Q ss_pred --------------EEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHH
Q 007764 271 --------------FCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (590)
Q Consensus 271 --------------~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (590)
+.+++.. ...-..+|.+.+... .+...|+||||+|.|- ....+.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHH
Confidence 1121110 011223455544432 3345699999999883 2345677
Q ss_pred HHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCC
Q 007764 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (590)
Q Consensus 333 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (590)
+..|+.... .+.+|.+|+.+..|.+.+++ |+ ..+.|..++.++....|+..+....+. .+..+..++..+.|-.
T Consensus 140 LKtLEEPP~--~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~ 214 (944)
T PRK14949 140 LKTLEEPPE--HVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSM 214 (944)
T ss_pred HHHHhccCC--CeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 777776433 55666667778888888877 76 778999999988888887655432222 3334778888888866
Q ss_pred HHHH
Q 007764 412 GADL 415 (590)
Q Consensus 412 ~~dl 415 (590)
+.-+
T Consensus 215 R~AL 218 (944)
T PRK14949 215 RDAL 218 (944)
T ss_pred HHHH
Confidence 5433
No 121
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.33 E-value=2.1e-11 Score=125.61 Aligned_cols=158 Identities=25% Similarity=0.369 Sum_probs=109.7
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+..+.+++++.|.++..+.++.++... ..+..+||+||||+|||++++++++.++..++.+++.+ .
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~ 79 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C 79 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c
Confidence 345678999999999999998888631 22446677999999999999999999998888998876 2
Q ss_pred hccchhHHHHHHHHHHH-HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCch
Q 007764 281 KLAGESESNLRKAFEEA-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a-~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~ 359 (590)
. .......+....... ....+.+++|||+|.+... .....|...++... .++.+|.++|.+..+.+
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 1 222222222221111 1134679999999876211 11234445555533 34567778898888999
Q ss_pred hhhccCCCceEEEecCCCHHHHHHHHHHH
Q 007764 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (590)
Q Consensus 360 al~r~gRf~~~i~i~~P~~~~r~~Il~~~ 388 (590)
++++ |+ ..+.++.|+.+++..++...
T Consensus 147 ~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 147 PLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 9987 78 57899999999998776643
No 122
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.33 E-value=7.9e-11 Score=114.16 Aligned_cols=156 Identities=24% Similarity=0.445 Sum_probs=99.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q 007764 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~ 317 (590)
..++||||+|+|||+|+++++++. +..++++++.++...+.......--.-|.... ....+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCc-
Confidence 469999999999999999998874 46688999888876554332221111222222 24569999999988533
Q ss_pred CCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC---chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCC--
Q 007764 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM-- 392 (590)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l---d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~-- 392 (590)
.+....|..+++.+...++.+++++...|..+ ++.+++.-.....+.+..|+.+.|.+|++......
T Consensus 113 --------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 113 --------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI 184 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-
T ss_pred --------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 23446677777777777777777776777654 57777622335688999999999999998765443
Q ss_pred CCCCccCHHHHHHhcCC
Q 007764 393 KLSDDVDLERIAKDTHG 409 (590)
Q Consensus 393 ~~~~~~~l~~la~~t~g 409 (590)
.+.++ -+..++....+
T Consensus 185 ~l~~~-v~~~l~~~~~~ 200 (219)
T PF00308_consen 185 ELPEE-VIEYLARRFRR 200 (219)
T ss_dssp -S-HH-HHHHHHHHTTS
T ss_pred CCcHH-HHHHHHHhhcC
Confidence 33332 25556655543
No 123
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4.6e-11 Score=124.97 Aligned_cols=185 Identities=20% Similarity=0.264 Sum_probs=122.3
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+.+|+++.|++..++.++..+... ..+..+||+||+|+||||+|+++|+.+...
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 35678999999999999998887642 123468999999999999999999987532
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++.. ...-..++.+.+.... ....+++|||+|.+.. ...+.|+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLL 140 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALL 140 (363)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHH
Confidence 12222110 0122345555554432 2346999999997731 2334566
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-CCccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~t~g~~~ 412 (590)
..++.... .+.+|.+|+.++.+.+.+++ |+ ..+++++|+.++..+++...++.... .++..+..++..+.|-.+
T Consensus 141 k~lEe~~~--~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 141 KTLEEPPQ--HIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMR 215 (363)
T ss_pred HHHhcCCC--CeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 66665333 45555566777788888876 76 67899999999999888876554332 233456778888777544
Q ss_pred HHHHHHHHH
Q 007764 413 ADLAALCTE 421 (590)
Q Consensus 413 ~dl~~l~~~ 421 (590)
. ...++..
T Consensus 216 ~-al~~l~~ 223 (363)
T PRK14961 216 D-ALNLLEH 223 (363)
T ss_pred H-HHHHHHH
Confidence 3 3344433
No 124
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=4.9e-11 Score=130.89 Aligned_cols=179 Identities=17% Similarity=0.266 Sum_probs=122.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+.+|++|+|.+..++.|+..+... .-+..+||+||+|+||||+|+.+|+.+++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 35678999999999999998888652 123458999999999999999999998652
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++.. ...-+.++.+.+.+. .+...|+||||+|.+.. ...+.|+
T Consensus 78 ~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NALL 140 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 140 (647)
T ss_pred HHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHHH
Confidence 22333221 011233455544432 34456999999998742 3446777
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..|+... ..+.+|.+|+.+..|.+.+++ |+ ..+.|..++.++-...|...+....+. ++..+..++..+.|..+
T Consensus 141 KtLEEPp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 141 KTLEEPP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHHHcCC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 7777643 356666677788889888887 75 889999999998888887665432322 23446677777777655
Q ss_pred HH
Q 007764 413 AD 414 (590)
Q Consensus 413 ~d 414 (590)
.-
T Consensus 216 ~A 217 (647)
T PRK07994 216 DA 217 (647)
T ss_pred HH
Confidence 43
No 125
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.32 E-value=7e-11 Score=124.27 Aligned_cols=218 Identities=27% Similarity=0.313 Sum_probs=133.1
Q ss_pred ccchHHHHHHHHHHHHcccCChhhhhhh--CC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccch
Q 007764 210 VGGVRKQMAQIRELVELPLRHPQLFKSI--GV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 285 (590)
Q Consensus 210 i~G~~~~~~~l~~~~~~~~~~~~~~~~l--~i-~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~-~~~g~ 285 (590)
|+|++++++.+...+..+.+.-...... .+ .+..++||+||||||||++|+++|..++.+|+.+++..+.. .|.|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 9999999999976653221110000000 11 24578999999999999999999999999999999988753 56665
Q ss_pred hH-HHHHHHHHH----HHhcCCeEEEEcccccccCCCCCCch---hHHHHHHHHHHHhhhccc-----------cCCeEE
Q 007764 286 SE-SNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLK-----------SRAHVI 346 (590)
Q Consensus 286 ~~-~~~~~~f~~----a~~~~p~iL~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~-----------~~~~v~ 346 (590)
.. ..+..+++. .....++||||||+|.+......++. .-...+.+.|+.+|++-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 33 334444432 23346789999999999876332211 111246678888887531 011344
Q ss_pred EEeecCCCC----------------------------C------------------------CchhhhccCCCceEEEec
Q 007764 347 VIGATNRPN----------------------------S------------------------IDPALRRFGRFDREIDIG 374 (590)
Q Consensus 347 vI~~tn~~~----------------------------~------------------------ld~al~r~gRf~~~i~i~ 374 (590)
+|.|+|... . +.|++. +|++..+.+.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 555544410 0 122222 6899999999
Q ss_pred CCCHHHHHHHHHH----HhcC---------CCCC-CccCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHh
Q 007764 375 VPDEVGRLEVLRI----HTKN---------MKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIRE 429 (590)
Q Consensus 375 ~P~~~~r~~Il~~----~~~~---------~~~~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~~ 429 (590)
..+.+...+|+.. ..+. ..+. .+.-++.+++. ...+-.+.+..++.......+.+
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 9999999888863 2211 1111 22235566664 33455566777776666555543
No 126
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=6e-11 Score=127.57 Aligned_cols=184 Identities=23% Similarity=0.276 Sum_probs=124.6
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE----------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF---------- 271 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~---------- 271 (590)
..+-+|+|+.|++..++.|+..+..- ..+..+||+||+||||||+|+++|+.++....
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 45678999999999999998776541 22468999999999999999999999864211
Q ss_pred --EEechhhhhh----------ccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHh
Q 007764 272 --CINGPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTL 335 (590)
Q Consensus 272 --~v~~~~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 335 (590)
.-+|..+... ........++.+++.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk~ 151 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLKT 151 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHHH
Confidence 0111111110 011233456777766643 2346999999998732 234566666
Q ss_pred hhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHH
Q 007764 336 MDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 336 ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~ 413 (590)
++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++.++...+++..++..... ++..+..++..+.|....
T Consensus 152 LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 152 LEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred Hhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 6643 3356666667777888888887 77 678899999999999988776544432 234467788888775443
No 127
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.31 E-value=6e-11 Score=130.16 Aligned_cols=179 Identities=20% Similarity=0.295 Sum_probs=117.9
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEechh
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCINGPE 277 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v~~~~ 277 (590)
+.|.|-++++++|..++.-.+.. -.++..++|+|+||||||++++.+.+++ ...+++|||..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56899999999998888654322 1233446799999999999999998765 14578999954
Q ss_pred hhhh----------cc------c-hhHHHHHHHHHHHHh--cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhc
Q 007764 278 IMSK----------LA------G-ESESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (590)
Q Consensus 278 l~~~----------~~------g-~~~~~~~~~f~~a~~--~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (590)
+... .. | .....+..+|..... ....||+|||||.|.... ..++..|+.+...
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~~ 898 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPTK 898 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhhc
Confidence 3211 10 1 122345556655422 335699999999997542 2344445554332
Q ss_pred cccCCeEEEEeecCCC---CCCchhhhccCCCce-EEEecCCCHHHHHHHHHHHhcCCC-CCCccCHHHHHHh
Q 007764 339 LKSRAHVIVIGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKD 406 (590)
Q Consensus 339 ~~~~~~v~vI~~tn~~---~~ld~al~r~gRf~~-~i~i~~P~~~~r~~Il~~~~~~~~-~~~~~~l~~la~~ 406 (590)
....+++||++|.. +.+++.+++ ||.. ++.|++++.+++.+||+..+.... .-++..+..+|+.
T Consensus 899 --s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArk 967 (1164)
T PTZ00112 899 --INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARK 967 (1164)
T ss_pred --cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 34578999999864 456677776 5543 488899999999999998776432 2233345666663
No 128
>PRK06893 DNA replication initiation factor; Validated
Probab=99.31 E-value=3.2e-11 Score=117.97 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=98.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC
Q 007764 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 319 (590)
..++||||||||||+|++++|+++ +....+++..+.. .....+++... ...+|+|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCChH-
Confidence 468999999999999999999886 3344444443211 11112233332 356999999998864321
Q ss_pred CchhHHHHHHHHHHHhhhccccCCe-EEEEeecCCCCCCc---hhhhccCCCceEEEecCCCHHHHHHHHHHHhc--CCC
Q 007764 320 THGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMK 393 (590)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~~-v~vI~~tn~~~~ld---~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~--~~~ 393 (590)
....|+.+++....... +++++++..|..++ +.+++..++...+.++.|+.+.+.+|++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 11345666665554443 45666666776654 78887556678899999999999999986654 444
Q ss_pred CCCccCHHHHHHhcCCCCHH
Q 007764 394 LSDDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 394 ~~~~~~l~~la~~t~g~~~~ 413 (590)
+.+ ..+..++....|-...
T Consensus 181 l~~-~v~~~L~~~~~~d~r~ 199 (229)
T PRK06893 181 LSD-EVANFLLKRLDRDMHT 199 (229)
T ss_pred CCH-HHHHHHHHhccCCHHH
Confidence 443 3367777777665443
No 129
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.30 E-value=1.3e-10 Score=120.91 Aligned_cols=179 Identities=24% Similarity=0.326 Sum_probs=116.1
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEechh
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCINGPE 277 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~-----~~~~~v~~~~ 277 (590)
.+.+++++.|.+..++.+.+++..+ ...+++|+||||||||++|+++++++. ..++.+++.+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 4567889999999999998887642 123799999999999999999999874 2467778766
Q ss_pred hhhhcc-------------ch-------hHHHHHHHHHHHHh-----cCCeEEEEcccccccCCCCCCchhHHHHHHHHH
Q 007764 278 IMSKLA-------------GE-------SESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (590)
Q Consensus 278 l~~~~~-------------g~-------~~~~~~~~f~~a~~-----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (590)
+..... +. ....++.+.+.... ..+.++++||++.+.+ .....|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~~L 145 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQAL 145 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHHHH
Confidence 542210 00 11223333333322 2345999999997732 122445
Q ss_pred HHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCC
Q 007764 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (590)
Q Consensus 333 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~ 410 (590)
..+++..... ..+|.+++.+..+.+.+++ |+ ..+.+.+|+.++...+++..+...... ++..+..++..+.|-
T Consensus 146 ~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gd 219 (337)
T PRK12402 146 RRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGD 219 (337)
T ss_pred HHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 6666654333 2334455555566677776 65 678999999999999998766544332 334567777776543
No 130
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=8.3e-11 Score=127.04 Aligned_cols=179 Identities=21% Similarity=0.277 Sum_probs=121.3
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~----------- 269 (590)
+..+.+|+++.|++..++.|+.++... ..+..+||+|||||||||+|+++|+.+...
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 345678999999999999998888652 224467999999999999999999987431
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++.. ...-..++.+.+.+. ...+.++||||+|.+. ....+.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHH
Confidence 34444321 111233444433332 2346799999998652 22345666
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..++... ..+++|.+++.+..+.+.+++ |+ ..+.+..|+..+....+...+...... ++..+..++..+.|..+
T Consensus 138 k~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 138 KTLEEPP--EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMR 212 (504)
T ss_pred HHHHhCC--CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 6666532 355666677888888888886 66 578999999999888887765443332 33346777777777654
Q ss_pred H
Q 007764 413 A 413 (590)
Q Consensus 413 ~ 413 (590)
.
T Consensus 213 ~ 213 (504)
T PRK14963 213 D 213 (504)
T ss_pred H
Confidence 4
No 131
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=2.4e-10 Score=112.16 Aligned_cols=175 Identities=14% Similarity=0.189 Sum_probs=106.7
Q ss_pred CCCccccc--chHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhh
Q 007764 204 EVGYDDVG--GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEI 278 (590)
Q Consensus 204 ~~~~~~i~--G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~---~~~~~v~~~~l 278 (590)
..+|++.. +....+..++++... ..+.+++|+||+|||||+|++++++.+. ..+.+++..+.
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 34555533 345555556655432 2235899999999999999999998753 34555555443
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCe-EEEEeecCCCCC-
Q 007764 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNS- 356 (590)
Q Consensus 279 ~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~-v~vI~~tn~~~~- 356 (590)
... ...+++.... ..+|+|||++.+..+. .....|..+++......+ -++++++++|..
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~---------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE---------LWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH---------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 211 1122222222 2589999999875432 112334455554444333 355555566655
Q ss_pred --CchhhhccCCC--ceEEEecCCCHHHHHHHHHHHhc--CCCCCCccCHHHHHHhcCCCCHH
Q 007764 357 --IDPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 357 --ld~al~r~gRf--~~~i~i~~P~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~t~g~~~~ 413 (590)
+.+.+++ |+ ...+.+..|+.+++.++++.... ++.+.+ .-++.++....+-...
T Consensus 146 ~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~-~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 146 NLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPE-DVGRFLLKRLDREMRT 205 (235)
T ss_pred CcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhhcCCHHH
Confidence 4688887 65 48899999999999999987544 344433 3367777777765443
No 132
>PRK08727 hypothetical protein; Validated
Probab=99.29 E-value=7.2e-11 Score=115.74 Aligned_cols=150 Identities=25% Similarity=0.373 Sum_probs=97.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCC
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 318 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~ 318 (590)
...++|+||+|||||+|+++++..+ +....+++..+... .+...++.. ....+|+|||++.+..+..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCChH
Confidence 3569999999999999999997764 45556666544332 223344433 2346999999998764321
Q ss_pred CCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC---chhhhccCCC--ceEEEecCCCHHHHHHHHHHHhc--C
Q 007764 319 KTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTK--N 391 (590)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l---d~al~r~gRf--~~~i~i~~P~~~~r~~Il~~~~~--~ 391 (590)
....++.+++....+..-+++.+...|..+ ++.+++ || ...+.++.|+.+++.+|++.++. +
T Consensus 111 ---------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 ---------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred ---------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 113344555554444333444455566655 688887 65 57889999999999999997653 3
Q ss_pred CCCCCccCHHHHHHhcCCCCHH
Q 007764 392 MKLSDDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 392 ~~~~~~~~l~~la~~t~g~~~~ 413 (590)
+.+. +..+..++..+.|-...
T Consensus 180 l~l~-~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 180 LALD-EAAIDWLLTHGERELAG 200 (233)
T ss_pred CCCC-HHHHHHHHHhCCCCHHH
Confidence 4333 33467777777654433
No 133
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=7.6e-11 Score=127.67 Aligned_cols=167 Identities=19% Similarity=0.312 Sum_probs=109.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q 007764 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~ 317 (590)
..++|||++|+|||+|++++++++ +..++++++.++...+...........|.... ..+++|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 459999999999999999999986 46789999988877665443332222343322 346799999999986542
Q ss_pred CCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC---CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC
Q 007764 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL 394 (590)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~---~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~ 394 (590)
. ....|+.+++.+....+-+||++...|. .+++.|++.......+.+..|+.+.|..||+..+....+
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1244566666655544445554444443 467888873333667799999999999999987654433
Q ss_pred C-CccCHHHHHHhcCCCCHHHHHHHHH
Q 007764 395 S-DDVDLERIAKDTHGYVGADLAALCT 420 (590)
Q Consensus 395 ~-~~~~l~~la~~t~g~~~~dl~~l~~ 420 (590)
. .+..+..|+....+-. +.+..++.
T Consensus 465 ~l~~eVi~yLa~r~~rnv-R~LegaL~ 490 (617)
T PRK14086 465 NAPPEVLEFIASRISRNI-RELEGALI 490 (617)
T ss_pred CCCHHHHHHHHHhccCCH-HHHHHHHH
Confidence 2 2233667777665432 33443333
No 134
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.28 E-value=3.1e-12 Score=134.47 Aligned_cols=107 Identities=25% Similarity=0.375 Sum_probs=77.0
Q ss_pred cccccchhhhcccceeecccCChhhhhhc--CC-CCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh-hhhcc
Q 007764 482 DIGGLENVKRELQETVQYPVEHPEKFEKF--GM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG 557 (590)
Q Consensus 482 ~iggl~~vk~~L~~~v~~~~~~~~~~~~~--~~-~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~-~~~vG 557 (590)
.+.|++++++.|...+.........-.+. .. .+..++||+||||||||++|+++|..++.+|+.++++++. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 47899999998866553221111000000 11 1456799999999999999999999999999999998875 46999
Q ss_pred chH-HHHHHHHHHH----hhCCCeEEEEcccccccc
Q 007764 558 ESE-ANVREIFDKA----RQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 558 ese-~~ir~~f~~A----r~~~p~vlf~DEid~l~~ 588 (590)
+.. ..+..+++.+ ..+.++||||||||++.+
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 874 4456666543 345778999999999975
No 135
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.27 E-value=9.7e-11 Score=105.45 Aligned_cols=137 Identities=46% Similarity=0.731 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHH
Q 007764 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESES 288 (590)
Q Consensus 212 G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~~ 288 (590)
|.+.++..+...+.. ..+.+++|+||||||||++++.+++.+ +.+++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 455666666555533 246789999999999999999999998 7888888887765543222111
Q ss_pred H---HHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc----CCeEEEEeecCCCC--CCch
Q 007764 289 N---LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----RAHVIVIGATNRPN--SIDP 359 (590)
Q Consensus 289 ~---~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----~~~v~vI~~tn~~~--~ld~ 359 (590)
. ....+.......+.++++||++.+.. .....+...+..... ...+.+|++++... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLSR-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhhH-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 12222334445678999999997621 112334444444332 35677888888776 5667
Q ss_pred hhhccCCCceEEEec
Q 007764 360 ALRRFGRFDREIDIG 374 (590)
Q Consensus 360 al~r~gRf~~~i~i~ 374 (590)
.+.. ||+..+.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 7765 887776664
No 136
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.27 E-value=2.3e-12 Score=123.70 Aligned_cols=98 Identities=33% Similarity=0.490 Sum_probs=78.1
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhc
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~v 556 (590)
.-.|++..|++++|+.|+-.++-+.. .-....|+|||||||.||||||..+|+|++.|+-...||-+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~--------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le---- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKK--------RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE---- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHh--------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc----
Confidence 34678888999999998877654332 223567899999999999999999999999999999998762
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEcccccccccC
Q 007764 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQV 590 (590)
Q Consensus 557 Gese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~v 590 (590)
-...+..++...... .|+|+|||+++.|.|
T Consensus 90 --K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~v 119 (332)
T COG2255 90 --KPGDLAAILTNLEEG--DVLFIDEIHRLSPAV 119 (332)
T ss_pred --ChhhHHHHHhcCCcC--CeEEEehhhhcChhH
Confidence 344566777665544 699999999999875
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.27 E-value=1.5e-10 Score=115.51 Aligned_cols=134 Identities=25% Similarity=0.299 Sum_probs=91.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh------hhhhccchhHHHH-HH-------------------HH
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE------IMSKLAGESESNL-RK-------------------AF 294 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~------l~~~~~g~~~~~~-~~-------------------~f 294 (590)
.+.++||+||||||||++|+++|..++.+++.+++.. +++.+.+...... .. .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3678999999999999999999999999999988743 3333222111110 00 11
Q ss_pred HHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--------------cCCeEEEEeecCCCC-----
Q 007764 295 EEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------------SRAHVIVIGATNRPN----- 355 (590)
Q Consensus 295 ~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------------~~~~v~vI~~tn~~~----- 355 (590)
..|.. ...++++||++.+.+ .+.+.|+..++.-. ....+.+|+|+|+..
T Consensus 100 ~~A~~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHHH-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 11222 346999999997632 23455666654311 123667899999763
Q ss_pred CCchhhhccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 356 ~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
.+++++.+ || ..+.++.|+.++..+|+..+.
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 45788887 88 679999999999999998765
No 138
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.8e-10 Score=122.95 Aligned_cols=177 Identities=23% Similarity=0.278 Sum_probs=121.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------- 268 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~------------- 268 (590)
..+.+|+|++|++..++.|+.++..- ..+.++||+||+|+||||+|+.+|+.+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 34678999999999999998877642 23568999999999999999999987632
Q ss_pred -----------eEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 269 -----------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 269 -----------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
.++.+++.+- ..-..++.+.+.+.. ....+++|||+|.+.. ...+.|+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLL 137 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALL 137 (491)
T ss_pred HHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHH
Confidence 2344444321 123456666665542 3456999999997732 2346677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..++.... .+.+|.+|+.++.+.+.+++ |+ ..+++..++.++....+...+...... ++..+..++..+.|-..
T Consensus 138 K~LEePp~--~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 138 KTLEEPAP--HVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMR 212 (491)
T ss_pred HHHhCCCC--CeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 77776433 45666667777788888887 66 668999999988888887665443322 33446677777766433
No 139
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.2e-10 Score=126.04 Aligned_cols=185 Identities=18% Similarity=0.241 Sum_probs=121.6
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+-+|++++|.+..++.|+.++... .-+..+||+||+|+||||+|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 35668999999999999999888642 123468999999999999999999988642
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++++++.. ...-+.++.+.+.+. .+...|+||||+|.+.. ...+.|+
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLL 140 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALL 140 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHH
Confidence 34444321 112233555555432 23456999999998742 2346677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..++.... .+.+|.+|+.+..+.+.+++ |+ ..+++..++..+....+...+...... ++..+..++..+.|-.
T Consensus 141 k~LEepp~--~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~Gsl- 214 (509)
T PRK14958 141 KTLEEPPS--HVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSV- 214 (509)
T ss_pred HHHhccCC--CeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH-
Confidence 77776433 45566667777788877776 66 567788888877666665554433322 2334677777777643
Q ss_pred HHHHHHHHH
Q 007764 413 ADLAALCTE 421 (590)
Q Consensus 413 ~dl~~l~~~ 421 (590)
++...++..
T Consensus 215 R~al~lLdq 223 (509)
T PRK14958 215 RDALSLLDQ 223 (509)
T ss_pred HHHHHHHHH
Confidence 344444433
No 140
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.26 E-value=8.3e-11 Score=114.31 Aligned_cols=182 Identities=20% Similarity=0.238 Sum_probs=116.0
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------EEEEec
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------FFCING 275 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------~~~v~~ 275 (590)
..+-+++++.|++..++.|...+.. - ...++|+|||||||||+.|+++|+++..+ +...|.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~-~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR-R------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh-c------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 3567899999999999999877754 1 23489999999999999999999998652 344454
Q ss_pred hhhhhhccchhHHHHHHHHHHHHhc---------C-CeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeE
Q 007764 276 PEIMSKLAGESESNLRKAFEEAEKN---------A-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 345 (590)
Q Consensus 276 ~~l~~~~~g~~~~~~~~~f~~a~~~---------~-p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (590)
++..+..+. .+.+. -|...... . .-|+++||.|.+.. .....|...|+.... .+
T Consensus 97 SderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~--~t 160 (346)
T KOG0989|consen 97 SDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSR--TT 160 (346)
T ss_pred cccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcccc--ce
Confidence 444433211 11111 12222111 1 26999999998742 334667777877544 45
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHH
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADL 415 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl 415 (590)
.+|..||..+.|...+.+ |. ..+.|+....+.....|+..+..-.+. ++..+..++..+.|-....+
T Consensus 161 rFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ai 228 (346)
T KOG0989|consen 161 RFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAI 228 (346)
T ss_pred EEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 666678998888777765 55 334555555555555555444333332 23347788888887655443
No 141
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.2e-10 Score=126.64 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=119.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+.+|++|.|.+..++.|+.++... .-...+||+||+|+|||++|+++|+.+...
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 35678999999999999998888642 113489999999999999999999988642
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHH----HHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~----a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++..- ..-..++.+.+. .......|+||||+|.+. ....+.|+
T Consensus 78 sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLL 140 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALL 140 (624)
T ss_pred HHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHH
Confidence 333433210 011223333222 223445799999999873 22346677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-CCccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~t~g~~~ 412 (590)
..++... ..+++|.+|+.+..+.+.+++ |+ ..+.|..++.++...+|...+..... -++..+..++..+.|-..
T Consensus 141 k~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 7776532 356777778877778877776 66 57889999999988888765544332 233346677777776554
Q ss_pred HH
Q 007764 413 AD 414 (590)
Q Consensus 413 ~d 414 (590)
.-
T Consensus 216 ~A 217 (624)
T PRK14959 216 DS 217 (624)
T ss_pred HH
Confidence 33
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=9.1e-11 Score=125.07 Aligned_cols=158 Identities=20% Similarity=0.360 Sum_probs=102.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC
Q 007764 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~ 319 (590)
.+++||||+|+|||+|++++++++ +..+++++..++...+.......-...|.... ....+|+|||++.+.++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 57788888877665433222211112233322 3567999999998854321
Q ss_pred CchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC---CCchhhhccCCCc--eEEEecCCCHHHHHHHHHHHhcCCCC
Q 007764 320 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKL 394 (590)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~---~ld~al~r~gRf~--~~i~i~~P~~~~r~~Il~~~~~~~~~ 394 (590)
....++..++.+......++++++..|. .+++.+++ ||. ..+.+..|+.+.|..||+..+....+
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 1234445554443344556665655554 45678877 774 78899999999999999877655433
Q ss_pred C-CccCHHHHHHhcCCCCH
Q 007764 395 S-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 395 ~-~~~~l~~la~~t~g~~~ 412 (590)
. ++..+..++....+-..
T Consensus 290 ~l~~evl~~la~~~~~dir 308 (445)
T PRK12422 290 RIEETALDFLIEALSSNVK 308 (445)
T ss_pred CCCHHHHHHHHHhcCCCHH
Confidence 2 22335667666664433
No 143
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.25 E-value=7.3e-12 Score=128.90 Aligned_cols=89 Identities=28% Similarity=0.447 Sum_probs=65.8
Q ss_pred cccccchhhhcccceeecccCChhhhhhc-CCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh-hhcc-c
Q 007764 482 DIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 558 (590)
Q Consensus 482 ~iggl~~vk~~L~~~v~~~~~~~~~~~~~-~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~-~~vG-e 558 (590)
.+.|+++.|+.+..++............+ .-.+++++||+||||||||++|++||..++.+|+.++++++.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 46788888887765543211110000000 1124589999999999999999999999999999999999874 7999 6
Q ss_pred hHHHHHHHHHHH
Q 007764 559 SEANVREIFDKA 570 (590)
Q Consensus 559 se~~ir~~f~~A 570 (590)
.|..+|++|+.|
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 789999998887
No 144
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.7e-10 Score=126.12 Aligned_cols=185 Identities=19% Similarity=0.277 Sum_probs=124.3
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+-+|++|+|.+..++.|+.++... ..+..+||+||+|+|||++|+++++.++..
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 45678999999999999999888752 234579999999999999999999987542
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++.. +.....++.++..+. .....|+||||+|.+. ....+.|+
T Consensus 78 sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALL 140 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAML 140 (709)
T ss_pred HHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHH
Confidence 12222111 112245666665442 2345699999998763 22345677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..|+.... .+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....|...+....+. ++..+..+++.+.|-..
T Consensus 141 KtLEEPp~--~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslR 215 (709)
T PRK08691 141 KTLEEPPE--HVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMR 215 (709)
T ss_pred HHHHhCCC--CcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHH
Confidence 77775433 45666677778888888775 66 667888999988888887666544332 33346777777766543
Q ss_pred HHHHHHHHH
Q 007764 413 ADLAALCTE 421 (590)
Q Consensus 413 ~dl~~l~~~ 421 (590)
++..++..
T Consensus 216 -dAlnLLDq 223 (709)
T PRK08691 216 -DALSLLDQ 223 (709)
T ss_pred -HHHHHHHH
Confidence 34444433
No 145
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.23 E-value=5.7e-10 Score=109.23 Aligned_cols=178 Identities=15% Similarity=0.280 Sum_probs=107.1
Q ss_pred CCCcccc--cchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q 007764 204 EVGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 278 (590)
Q Consensus 204 ~~~~~~i--~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l 278 (590)
+.+|++. ++.+..+..++++... ...+.+++|+||+|||||+||+++++.. +..++++++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3455553 3445556666665541 2346789999999999999999999875 557788887665
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeE-EEEeecCCCC--
Q 007764 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPN-- 355 (590)
Q Consensus 279 ~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-~vI~~tn~~~-- 355 (590)
... +. ......+++|||++.+... ....|..+++........ ++++++..+.
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 321 11 1224569999999976321 123455555554444443 4444443332
Q ss_pred CCchhhhccCCC--ceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHH
Q 007764 356 SIDPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 421 (590)
Q Consensus 356 ~ld~al~r~gRf--~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~ 421 (590)
.+.+.+.+ || ...+.+++|+.+.+..++........+. ++.-+..++....|-. ..+..++..
T Consensus 137 ~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~-~~l~~~l~~ 202 (227)
T PRK08903 137 PLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDM-PSLMALLDA 202 (227)
T ss_pred CCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCH-HHHHHHHHH
Confidence 24566665 54 5789999999999888888765433322 2233566666444332 334444443
No 146
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.23 E-value=8.1e-12 Score=142.78 Aligned_cols=101 Identities=28% Similarity=0.440 Sum_probs=79.0
Q ss_pred ccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh--------
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~-------- 552 (590)
+++.|++++++.+.+.+.+.... +-..+.+++|+||||||||++|+++|+.++.+|+.+....+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45778999999888765432211 112234799999999999999999999999999998754432
Q ss_pred -hhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 553 -~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
..|+|.....+.+.|..|....| ||||||||++++.
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~ 429 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS 429 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc
Confidence 36899988889999999977666 8999999999763
No 147
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=2.8e-10 Score=123.22 Aligned_cols=177 Identities=18% Similarity=0.241 Sum_probs=119.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+.+|+++.|.+..++.++.++... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 45678999999999999998877541 224579999999999999999999987431
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++... -.-..++.+...+.. ....|++|||+|.+-. ...+.|+
T Consensus 78 sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLL 140 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALL 140 (605)
T ss_pred HHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHH
Confidence 223332110 112335555554432 2345999999998732 2335677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-CCccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~t~g~~~ 412 (590)
..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..|+..+....+...+..... -++..+..++..+.|-.+
T Consensus 141 KtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 141 KTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLR 215 (605)
T ss_pred HHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH
Confidence 7777543 356666677778889888887 66 57899999999988888765543332 123346777777776544
No 148
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=4.6e-10 Score=122.64 Aligned_cols=175 Identities=18% Similarity=0.246 Sum_probs=116.0
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+-+|++|.|++..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 35668999999999999999888652 223458999999999999999999987631
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhHHHHHHHH
Q 007764 270 --------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (590)
Q Consensus 270 --------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (590)
++.+++... ..-..++.+.+.+ ......|+||||+|.+-. ...+.
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~NA 137 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFNA 137 (584)
T ss_pred HHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHHH
Confidence 222322111 0122334433332 223456999999998732 24466
Q ss_pred HHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCC
Q 007764 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (590)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~ 410 (590)
|+..|+.... .+++|.+|+.++.+.+.+++ |. ..++|..++..+..+.+...+...... ++..+..++..+.|-
T Consensus 138 LLK~LEEpp~--~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 138 LLKIVEEPPE--HLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HHHHHhcCCC--CeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 7777775433 56666677777888888887 64 778999999888887777665543322 223345555555553
No 149
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=3.4e-10 Score=128.32 Aligned_cols=177 Identities=19% Similarity=0.229 Sum_probs=118.6
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~----------- 269 (590)
+..+.+|++|+|.+..++.|+.++... ..+..+||+||+|||||++|++||+.+.+.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 345678999999999999998888642 123468999999999999999999998642
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHH----HHhcCCeEEEEcccccccCCCCCCchhHHHHHHH
Q 007764 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (590)
Q Consensus 270 ---------------~~~v~~~~l~~~~~g~~~~~~~~~f~~----a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 330 (590)
++.+++... ..-..++.+.+. .......|+||||+|.|-. ...+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHH
Confidence 222322110 011233333322 2334567999999998842 3346
Q ss_pred HHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCC
Q 007764 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (590)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g 409 (590)
.|+..|+.... .+++|.+|+.++.|-+.+++ |+ ..++|..++.+....+|...++...+. ++..+..++....|
T Consensus 139 aLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77888876444 55566666777778888876 66 778999999888888887766443332 22335666666666
Q ss_pred CC
Q 007764 410 YV 411 (590)
Q Consensus 410 ~~ 411 (590)
-.
T Consensus 214 dl 215 (824)
T PRK07764 214 SV 215 (824)
T ss_pred CH
Confidence 44
No 150
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.22 E-value=2e-10 Score=128.71 Aligned_cols=171 Identities=24% Similarity=0.382 Sum_probs=113.0
Q ss_pred CCCCCcccccchHHHHH---HHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 202 LDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~---~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
..+-+++++.|.+..+. .+++++.. ....+++|+|||||||||+|+++++..+.+++.+++...
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 34678899999999875 45565543 223489999999999999999999999988888876531
Q ss_pred hhhccchhHHHHHHHHHHHH-----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCC
Q 007764 279 MSKLAGESESNLRKAFEEAE-----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (590)
Q Consensus 279 ~~~~~g~~~~~~~~~f~~a~-----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~ 353 (590)
.- ..++..+..+. .....+|||||+|.+... ..+.|+..++ ...+++|++|+.
T Consensus 89 ~i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aTTe 146 (725)
T PRK13341 89 GV-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGATTE 146 (725)
T ss_pred hh-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEecCC
Confidence 11 12233333321 134569999999987421 1233444443 346777776543
Q ss_pred --CCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC---------CCCCCccCHHHHHHhcCCCC
Q 007764 354 --PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN---------MKLSDDVDLERIAKDTHGYV 411 (590)
Q Consensus 354 --~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~---------~~~~~~~~l~~la~~t~g~~ 411 (590)
...+++++.+ |. ..+.+++++.++...+++..+.. ..+ ++..+..++....|-.
T Consensus 147 np~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I-~deaL~~La~~s~GD~ 211 (725)
T PRK13341 147 NPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL-EPEAEKHLVDVANGDA 211 (725)
T ss_pred ChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC-CHHHHHHHHHhCCCCH
Confidence 2457788886 54 56889999999999999876541 122 2334677777765543
No 151
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.22 E-value=2.6e-10 Score=119.33 Aligned_cols=218 Identities=26% Similarity=0.332 Sum_probs=131.0
Q ss_pred ccchHHHHHHHHHHHHcccCChhh----hhhhCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hcc
Q 007764 210 VGGVRKQMAQIRELVELPLRHPQL----FKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLA 283 (590)
Q Consensus 210 i~G~~~~~~~l~~~~~~~~~~~~~----~~~l~i-~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~-~~~ 283 (590)
+.|+++.++.+...+....+.-.. ...-++ ....++||+||||||||++|+++|..++.++..+++..+.. .|.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 899999999987665321111000 000011 12468999999999999999999999999999888877653 466
Q ss_pred chh-HHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCch---hHHHHHHHHHHHhhhcccc-----------CCe
Q 007764 284 GES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKS-----------RAH 344 (590)
Q Consensus 284 g~~-~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~-----------~~~ 344 (590)
|.. +..+...++.+ ....+++|||||+|.+.++....+. .....+.+.|+..|++... ..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 653 33444444322 2345779999999999875432211 1112466778888865421 124
Q ss_pred EEEEeecCCCC--------------------------C------------------------CchhhhccCCCceEEEec
Q 007764 345 VIVIGATNRPN--------------------------S------------------------IDPALRRFGRFDREIDIG 374 (590)
Q Consensus 345 v~vI~~tn~~~--------------------------~------------------------ld~al~r~gRf~~~i~i~ 374 (590)
.++|.|+|-.. . +.|++ .+|++..+.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEeecC
Confidence 55666665410 0 11222 26888899999
Q ss_pred CCCHHHHHHHHHHH----hcCC---------CCC-CccCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHh
Q 007764 375 VPDEVGRLEVLRIH----TKNM---------KLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIRE 429 (590)
Q Consensus 375 ~P~~~~r~~Il~~~----~~~~---------~~~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~~ 429 (590)
+.+.+...+|+... .+.+ .+. ++.-++.+++. ...|-.+.+..++.......+.+
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 99999988888652 2111 111 12235556654 33455566666666665554443
No 152
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=5.9e-10 Score=120.66 Aligned_cols=177 Identities=18% Similarity=0.261 Sum_probs=116.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------- 268 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~------------- 268 (590)
..+.+|+++.|.+..++.|...+... ..+..+||+||+|+||||+|+.+|+.+..
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 35678999999999999998888642 12346899999999999999999998753
Q ss_pred -----------eEEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 269 -----------FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 269 -----------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
.++.+++..- . .-..++.+++.+. .....|+||||+|.+.. ...+.|+
T Consensus 78 sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLL 140 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALL 140 (546)
T ss_pred HHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHH
Confidence 1233332110 1 1123444444432 23456999999987632 2346677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++.++....+...+...... ++..+..++..+.|-.+
T Consensus 141 K~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 141 KTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred HHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 7777533 345556566667778777776 66 788999999988877777654433322 33345667777766444
No 153
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.3e-10 Score=124.24 Aligned_cols=177 Identities=14% Similarity=0.228 Sum_probs=118.3
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+-+|++++|.+..++.|+.++..- .-+..+||+||+|+||||+|+++|+.+++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 34678999999999999998888652 223468999999999999999999988641
Q ss_pred -----------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHH
Q 007764 270 -----------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRI 328 (590)
Q Consensus 270 -----------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v 328 (590)
++.+++.. ...-+.++.+.+.+.. +...|++|||+|.+.. ..
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a 140 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TA 140 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HH
Confidence 12222211 1122345666655432 2346999999998742 22
Q ss_pred HHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhc
Q 007764 329 VSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT 407 (590)
Q Consensus 329 ~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t 407 (590)
.+.|+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++.++....++..+...... ++..+..++..+
T Consensus 141 ~NaLLKtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 455666666532 355566666777778777776 66 778999999988888887665433332 233466777777
Q ss_pred CCCCH
Q 007764 408 HGYVG 412 (590)
Q Consensus 408 ~g~~~ 412 (590)
.|-..
T Consensus 216 ~GslR 220 (618)
T PRK14951 216 RGSMR 220 (618)
T ss_pred CCCHH
Confidence 76443
No 154
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.7e-09 Score=112.13 Aligned_cols=206 Identities=22% Similarity=0.318 Sum_probs=133.8
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----EEEEechhhhhhc
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----FFCINGPEIMSKL 282 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~-----~~~v~~~~l~~~~ 282 (590)
+.+.+-+++++++...+.-.++. ..|.++++|||||||||++++.+++++... +++|||....+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 34889999999998887654433 345579999999999999999999987543 7999996543211
Q ss_pred ---------------cch-hHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeE
Q 007764 283 ---------------AGE-SESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 345 (590)
Q Consensus 283 ---------------~g~-~~~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (590)
.|. ..+....+++.... ....|+++||+|.|....+ .++..|+.+.+.. ..++
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v 157 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKV 157 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeE
Confidence 111 11223333333333 4567999999999987643 4555666655554 5678
Q ss_pred EEEeecCCCC---CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC---CCccCHHHHH---HhcCCCCHHHHH
Q 007764 346 IVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL---SDDVDLERIA---KDTHGYVGADLA 416 (590)
Q Consensus 346 ~vI~~tn~~~---~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~---~~~~~l~~la---~~t~g~~~~dl~ 416 (590)
.+|+.+|..+ .+|+.+.+... ..+|.|++++..+...|+.......-. .++.-++.+| ...+| ..+-..
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ai 235 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAI 235 (366)
T ss_pred EEEEEeccHHHHHHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHH
Confidence 8999988764 56787776222 345899999999999999876543211 1222233333 33444 222334
Q ss_pred HHHHHHHHHHHHhccccc
Q 007764 417 ALCTEAALQCIREKMDVI 434 (590)
Q Consensus 417 ~l~~~a~~~~~~~~~~~~ 434 (590)
.+|+.|+..+-++..+.+
T Consensus 236 dilr~A~eiAe~~~~~~v 253 (366)
T COG1474 236 DILRRAGEIAEREGSRKV 253 (366)
T ss_pred HHHHHHHHHHHhhCCCCc
Confidence 677777776666655443
No 155
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.20 E-value=1.2e-11 Score=129.15 Aligned_cols=108 Identities=27% Similarity=0.418 Sum_probs=75.6
Q ss_pred ccccccchhhhcccceeecccCChhhh-hh---cCCC-CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh-hh
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKF-EK---FGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TM 554 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~-~~---~~~~-~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~-~~ 554 (590)
+.+.|+++.++.+..++.......... .. -++. ...++||+||||||||++|++||..++.+|..++++.+. ..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 346788888888766542111110000 00 0111 245799999999999999999999999999999988865 36
Q ss_pred hccch-HHHHHHHHHHH----hhCCCeEEEEcccccccc
Q 007764 555 WFGES-EANVREIFDKA----RQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 555 ~vGes-e~~ir~~f~~A----r~~~p~vlf~DEid~l~~ 588 (590)
|+|+. +..+..+++.+ ..+.++||||||||++++
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 99986 45566666543 245678999999999986
No 156
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=5.6e-10 Score=123.32 Aligned_cols=184 Identities=21% Similarity=0.293 Sum_probs=123.2
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE---Eechhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC---INGPEI 278 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~---v~~~~l 278 (590)
..+.+|+++.|++..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.-.. -.|...
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 35678999999999999999888652 224568999999999999999999987542110 001000
Q ss_pred ---hhh---------ccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccC
Q 007764 279 ---MSK---------LAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR 342 (590)
Q Consensus 279 ---~~~---------~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~ 342 (590)
.+. ........++.+.+.+.. ....|++|||+|.+.. ...+.|+..|+...
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEPP-- 146 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEPP-- 146 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcCC--
Confidence 000 000123446666665543 3456999999998742 23566777777643
Q ss_pred CeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHH
Q 007764 343 AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 343 ~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~ 413 (590)
..+++|.+|+.++.+.+.+++ |+ ..+++..++..+....+...+...... ++..+..++..+.|-.+.
T Consensus 147 ~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~ 215 (725)
T PRK07133 147 KHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRD 215 (725)
T ss_pred CceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 356666777788889888887 77 578999999999888887655433332 223367777777765443
No 157
>PRK05642 DNA replication initiation factor; Validated
Probab=99.19 E-value=7.6e-10 Score=108.55 Aligned_cols=147 Identities=18% Similarity=0.309 Sum_probs=100.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCC
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 318 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~ 318 (590)
..+++|+||+|+|||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 3679999999999999999998764 5677888887766421 122233322 2589999999875432
Q ss_pred CCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC---chhhhccCCC--ceEEEecCCCHHHHHHHHHHHhcC--
Q 007764 319 KTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKN-- 391 (590)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l---d~al~r~gRf--~~~i~i~~P~~~~r~~Il~~~~~~-- 391 (590)
.....|+.+++........++++++..|..+ .+.+++ || ...+.+..|+.+.+..+++.....
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1224577777776666677788777766543 577777 65 577888999999999999855433
Q ss_pred CCCCCccCHHHHHHhcCCC
Q 007764 392 MKLSDDVDLERIAKDTHGY 410 (590)
Q Consensus 392 ~~~~~~~~l~~la~~t~g~ 410 (590)
+.+. +.-+..++....+-
T Consensus 184 ~~l~-~ev~~~L~~~~~~d 201 (234)
T PRK05642 184 LHLT-DEVGHFILTRGTRS 201 (234)
T ss_pred CCCC-HHHHHHHHHhcCCC
Confidence 3333 23356666666544
No 158
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=6.4e-10 Score=122.11 Aligned_cols=175 Identities=22% Similarity=0.325 Sum_probs=120.0
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+-+|+++.|.+..++.|+..+... ..+..+||+||+|||||++|+.+|+.++..
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 35678999999999999998888652 234578999999999999999999987531
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++.. +..-..++.+...+. .....|++|||+|.+.. ...+.|+
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLL 140 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALL 140 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 23333211 122345666665543 23456999999998732 2345677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCC
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~ 410 (590)
..++.. ...+++|.+|+.++.+.+.+++ |+ ..++|..|+..+....+...+...... ++..+..++..+.|-
T Consensus 141 KtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~ 213 (559)
T PRK05563 141 KTLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGG 213 (559)
T ss_pred HHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 777653 2355666667778889998886 66 567899999988888887665544332 233466677776663
No 159
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=5.4e-10 Score=117.56 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=117.0
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE----------
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~---------- 270 (590)
+..+.+|++++|.+..++.+++.+... ..+.++|||||||+|||++++++++.+....
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345778999999999999998888652 2246899999999999999999999875421
Q ss_pred --EEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCe
Q 007764 271 --FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (590)
Q Consensus 271 --~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (590)
+.+++. .......++.+++.+.. ....++++||++.+.. ...+.|+..++.. ...
T Consensus 78 ~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~~ 138 (367)
T PRK14970 78 NIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PAH 138 (367)
T ss_pred ceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CCc
Confidence 112111 11123456666665532 3356999999987632 1235566656542 223
Q ss_pred EEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-CCccCHHHHHHhcCC
Q 007764 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (590)
Q Consensus 345 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~t~g 409 (590)
.++|.+++.+..+.+++++ |+ ..+++..|+..+...++...+..... -++..+..++..+.|
T Consensus 139 ~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 139 AIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred eEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 4555556667788888876 65 46899999999988888765544433 233456777776665
No 160
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.19 E-value=1.9e-09 Score=119.81 Aligned_cols=164 Identities=27% Similarity=0.483 Sum_probs=104.7
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 272 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~ 272 (590)
.+-+|+++.|.+..++.+.+.+..+ .+.+++|+|||||||||+|+++.+.. +.+++.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 4568889999999998886665432 24579999999999999999998765 346888
Q ss_pred Eechhhh-------hhccchhHH----HHHHHHHH----------HHhcCCeEEEEcccccccCCCCCCchhHHHHHHHH
Q 007764 273 INGPEIM-------SKLAGESES----NLRKAFEE----------AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (590)
Q Consensus 273 v~~~~l~-------~~~~g~~~~----~~~~~f~~----------a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (590)
++|..+. ....+.... ..+..+.. .......+||+||++.+-.. ....
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HHHH
Confidence 8886542 111111110 01111110 01123459999999876422 2233
Q ss_pred HHHhhhcc--------------------------ccCCeEEEEee-cCCCCCCchhhhccCCCceEEEecCCCHHHHHHH
Q 007764 332 LLTLMDGL--------------------------KSRAHVIVIGA-TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEV 384 (590)
Q Consensus 332 Ll~~ld~~--------------------------~~~~~v~vI~~-tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~I 384 (590)
|+..++.- .....++++++ ++.++.+++++++ ||. .+.+++++.++...|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 33333221 01224566654 5567788999987 874 678899999999999
Q ss_pred HHHHhcCCC
Q 007764 385 LRIHTKNMK 393 (590)
Q Consensus 385 l~~~~~~~~ 393 (590)
++..+....
T Consensus 362 l~~~a~~~~ 370 (615)
T TIGR02903 362 VLNAAEKIN 370 (615)
T ss_pred HHHHHHHcC
Confidence 998766543
No 161
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.18 E-value=6.1e-10 Score=116.69 Aligned_cols=177 Identities=21% Similarity=0.337 Sum_probs=120.2
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~----------- 269 (590)
+..+.+|+++.|.++.++.+++.+... ..+..+||+||||+|||++|+++++.+...
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 345678999999999999998887541 234578999999999999999999887421
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHH
Q 007764 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (590)
Q Consensus 270 -------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (590)
++.+++.. ......++.+++.+.. ....+++|||+|.+.. ...+.|
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~L 137 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNAL 137 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHH
Confidence 23333321 1122345666665543 2345999999987731 234566
Q ss_pred HHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCC
Q 007764 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (590)
Q Consensus 333 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (590)
+..++... ..+++|.+++.++.+.+.+++ |+ ..++++.|+..+...++...++..... ++..+..++..+.|-.
T Consensus 138 l~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~ 212 (355)
T TIGR02397 138 LKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSL 212 (355)
T ss_pred HHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCh
Confidence 66665532 355666677777777788876 66 578999999999999988766544332 2344666777776633
No 162
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=3.6e-10 Score=123.15 Aligned_cols=177 Identities=17% Similarity=0.259 Sum_probs=118.6
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+.+|+++.|.+..++.|..++... ..+..+||+||+|+||||+|+++|+.++..
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34568999999999999998888642 223568999999999999999999998542
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++.. ...-..++.++..+.. ....|+||||+|.+.. ...+.|+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLL 140 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAML 140 (527)
T ss_pred HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHH
Confidence 12222110 1123456666665532 2346999999997732 2345677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++.++-...+...+...... ++..+..++..+.|-.+
T Consensus 141 K~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 141 KTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMR 215 (527)
T ss_pred HHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 7776633 355666667777778777766 55 778899999888877776555433222 23346677777776544
No 163
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.16 E-value=4.2e-11 Score=120.58 Aligned_cols=92 Identities=28% Similarity=0.531 Sum_probs=69.4
Q ss_pred Ccccccccccchhhh---cccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 477 NVNWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 477 ~v~~~~iggl~~vk~---~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
.-+++++.|++++-. .|+.+++ -....+++|||||||||||||++||+..+.+|..++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---- 82 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---- 82 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc----
Confidence 345677788776642 2223222 12345799999999999999999999999999999763
Q ss_pred hhccchHHHHHHHHHHHhhCC----CeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSA----PCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~----p~vlf~DEid~l~~ 588 (590)
-.+-+.+|++|++|++.. -.|||+|||..+-.
T Consensus 83 ---~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 83 ---TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred ---cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh
Confidence 235688999999997543 37999999988754
No 164
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=1.3e-09 Score=116.80 Aligned_cols=177 Identities=20% Similarity=0.279 Sum_probs=118.2
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+.+|+++.|.+..++.|+..+... ..+..+|||||+|+|||++|+++|+.+...
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 45678999999999999998888642 224579999999999999999999987431
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHH
Q 007764 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (590)
Q Consensus 270 -------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (590)
++.+++.... .-..++.+.+.. ......+++|||+|.+.. ...+.|
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~L 141 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHR------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSL 141 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHH
Confidence 2333322110 012233322222 224567999999987742 234667
Q ss_pred HHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCC
Q 007764 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (590)
Q Consensus 333 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (590)
+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++.++....+.......... ++..+..++..+.|-.
T Consensus 142 Lk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 142 LKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSL 216 (451)
T ss_pred HHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 77777643 355666677777888888887 66 578999999998888877655433321 3334677777776643
Q ss_pred H
Q 007764 412 G 412 (590)
Q Consensus 412 ~ 412 (590)
+
T Consensus 217 r 217 (451)
T PRK06305 217 R 217 (451)
T ss_pred H
Confidence 3
No 165
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=9.3e-10 Score=120.37 Aligned_cols=177 Identities=20% Similarity=0.281 Sum_probs=119.0
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+.+|+++.|++..++.|+..+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 45678999999999999998888642 224579999999999999999999987542
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++.. ...-..++.+.+.+ ......+++|||+|.+.. ...+.|+
T Consensus 78 ~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLL 140 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALL 140 (563)
T ss_pred HHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHH
Confidence 12222211 01123444444332 234556999999997731 2345677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..++.. ...+++|.+|+.+..+.+++++ |+ ..+++..++.++....+...+...... ++..+..++..+.|-.+
T Consensus 141 K~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 141 KTIEEP--PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVR 215 (563)
T ss_pred HhhccC--CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 777653 3356666677777888888887 76 468899999998888887665433322 33446677777776443
No 166
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=6e-10 Score=122.86 Aligned_cols=177 Identities=21% Similarity=0.308 Sum_probs=118.1
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+.+|++|+|.+..++.|+..+... ..+..+||+||+|+|||++|+++++.++..
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 45678999999999999998888642 224568999999999999999999997532
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.+++.. ...-..++.+...+.. ....|++|||+|.+.. ...+.|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLL 140 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALL 140 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHH
Confidence 23333221 1112345555554432 2346999999997742 2346777
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..|+... ..+++|.+|+.++.|.+.+++ |+ ..++|..++..+....+...++..... ++..+..++..+.|-.+
T Consensus 141 k~LEepp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 141 KTLEEPP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMR 215 (576)
T ss_pred HHHHcCC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH
Confidence 7777643 356666677888889888876 65 567888888887777766544433322 23345666666666443
No 167
>PHA02244 ATPase-like protein
Probab=99.15 E-value=1.5e-09 Score=110.56 Aligned_cols=127 Identities=27% Similarity=0.350 Sum_probs=80.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccc---hhHHHHHHHHHHHHhcCCeEEEEcccccccCC
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG---ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g---~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~ 316 (590)
..+.+++|+||||||||++|+++|..++.+++.+++..-.....| ........-|-.+. ....+++|||++.+.+.
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE 195 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHH
Confidence 345689999999999999999999999999998885311111111 00000001122222 34569999999976432
Q ss_pred CCCCchhHHHHHHHHHHHhhh--------c-cccCCeEEEEeecCCC-----------CCCchhhhccCCCceEEEecCC
Q 007764 317 REKTHGEVERRIVSQLLTLMD--------G-LKSRAHVIVIGATNRP-----------NSIDPALRRFGRFDREIDIGVP 376 (590)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld--------~-~~~~~~v~vI~~tn~~-----------~~ld~al~r~gRf~~~i~i~~P 376 (590)
+...|..+++ + .....++.+|+|+|++ ..++++++. || ..+++..|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCC
Confidence 2223333332 1 1234578899999974 466888887 99 56999999
Q ss_pred CHHHH
Q 007764 377 DEVGR 381 (590)
Q Consensus 377 ~~~~r 381 (590)
+..+.
T Consensus 262 ~~~E~ 266 (383)
T PHA02244 262 EKIEH 266 (383)
T ss_pred cHHHH
Confidence 84333
No 168
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.6e-09 Score=116.71 Aligned_cols=182 Identities=21% Similarity=0.298 Sum_probs=116.6
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------E-EEE
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------F-FCI 273 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~-------~-~~v 273 (590)
..+.+|+++.|++..++.|+..+..- ..+..+|||||+|+|||++|+.+|+.++.. . ...
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 45678999999999999998888641 123468999999999999999999987631 0 001
Q ss_pred echhhhh----------hccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcc
Q 007764 274 NGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL 339 (590)
Q Consensus 274 ~~~~l~~----------~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~ 339 (590)
+|..+.. ......-..++.+.+.+. .....|++|||+|.+.. ...+.|+..++..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LEep 146 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLEEP 146 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHhcC
Confidence 1111111 000011223444444433 23456999999997731 2335667777654
Q ss_pred ccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCC
Q 007764 340 KSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (590)
Q Consensus 340 ~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (590)
. ..+++|.+|+.++.+.+++++ |+ ..+.+..|+..+....+...++...+. ++..+..++..+.|-.
T Consensus 147 p--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~l 214 (486)
T PRK14953 147 P--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGM 214 (486)
T ss_pred C--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 2 244555556667778888876 66 578999999999998888776554433 2234667777776643
No 169
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=8.5e-10 Score=118.08 Aligned_cols=169 Identities=17% Similarity=0.263 Sum_probs=109.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHH--hcCCeEEEEccccccc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAE--KNAPSIIFIDEIDSIA 314 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~--~~~p~iL~iDEid~l~ 314 (590)
..+++|||++|+|||+|++++++++ +..++++++.++...+........ ..++... -....+|+|||++.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHhccCCEEEEecccccc
Confidence 3579999999999999999999864 467889999888776554332211 1122221 1346799999999885
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCC---CchhhhccCCC--ceEEEecCCCHHHHHHHHHHHh
Q 007764 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRF--DREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~---ld~al~r~gRf--~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
.+. .....|..+++........+|+.+...|.. +++.+++ || ...+.+..|+.++|.+|++..+
T Consensus 220 ~k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 220 YKE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CCH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHH
Confidence 432 223456666666555555455554445543 4677777 55 5678899999999999999877
Q ss_pred cCCCC---CCccCHHHHHHhcCCCCHHHHHHHHHHHH
Q 007764 390 KNMKL---SDDVDLERIAKDTHGYVGADLAALCTEAA 423 (590)
Q Consensus 390 ~~~~~---~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (590)
....+ -++..+..++....|-. +.+..++....
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd~-R~L~gaL~~l~ 324 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDDV-RKIKGSVSRLN 324 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCCH-HHHHHHHHHHH
Confidence 54322 23344677777777643 34445555443
No 170
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.14 E-value=5.7e-11 Score=135.14 Aligned_cols=75 Identities=28% Similarity=0.488 Sum_probs=68.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh----------CCcEEEEeccchh--hhhccchHHHHHHHHHHHhhCCCeEEEEc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKARQSAPCVLFFD 581 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v~~~el~--~~~vGese~~ir~~f~~Ar~~~p~vlf~D 581 (590)
...+++|+||||||||++|+++|... +..++.++...++ .+|.|+.|+.++++|+.|+...|+|||||
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiD 281 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFID 281 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEe
Confidence 45679999999999999999999987 6779999988888 58999999999999999988889999999
Q ss_pred ccccccc
Q 007764 582 ELDSIAT 588 (590)
Q Consensus 582 Eid~l~~ 588 (590)
||+.|.+
T Consensus 282 Eih~l~~ 288 (731)
T TIGR02639 282 EIHTIVG 288 (731)
T ss_pred cHHHHhc
Confidence 9999864
No 171
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.13 E-value=1.8e-09 Score=111.38 Aligned_cols=177 Identities=23% Similarity=0.273 Sum_probs=113.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----eEEEEech
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCINGP 276 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~-----~~~~v~~~ 276 (590)
..+.+|+++.|.+++++.++.++... ...+++|+||||||||++++++++++.. .++.++++
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 34568899999999999998887541 1236899999999999999999998732 34444433
Q ss_pred hhhhhccchhHHHHHHHHHHHHh------cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 277 EIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~a~~------~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
+..+ ...++..+..... ..+.++++||+|.+... ....|...++..... ..+|.+
T Consensus 78 ~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lIl~ 138 (319)
T PRK00440 78 DERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFILS 138 (319)
T ss_pred cccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEEEE
Confidence 2111 1112222222211 23459999999877321 124566666654443 344445
Q ss_pred cCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHH
Q 007764 351 TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 351 tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~ 413 (590)
+|.+..+.+.+.+ |+. .++++.++.++...++...+...... ++..+..++..+.|....
T Consensus 139 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 139 CNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 6666667677766 653 58999999999988888776544432 334577888777765444
No 172
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.12 E-value=5.8e-10 Score=118.47 Aligned_cols=71 Identities=21% Similarity=0.370 Sum_probs=48.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHHHhCC--cEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 509 ~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
+|.+.++..+.|+|++|||||||||+|++.... -.|.+.|.+ ++.. ....+.. .....++|-|-..||
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~----~~~~~~~-----r~~~QmvFQdp~~SL 380 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLT----GGELRRL-----RRRIQMVFQDPYSSL 380 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccc----cchhhhh-----hhheEEEEeCccccc
Confidence 345677888999999999999999999988743 357777766 3332 1122221 112247888888888
Q ss_pred ccc
Q 007764 587 ATQ 589 (590)
Q Consensus 587 ~~~ 589 (590)
-|.
T Consensus 381 nPr 383 (539)
T COG1123 381 NPR 383 (539)
T ss_pred Ccc
Confidence 764
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.12 E-value=4.9e-10 Score=126.11 Aligned_cols=162 Identities=22% Similarity=0.311 Sum_probs=109.6
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-----h
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIG--VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-----K 281 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~--i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~-----~ 281 (590)
.+.|+++.++.|.+.+..... .+. -.|...+||+||||||||.+|+++|..++.+++.++++++.. +
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~------gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc------cccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHH
Confidence 388999999999888764211 010 123347999999999999999999999999999999887643 2
Q ss_pred ccchhHH-----HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc---------cCCeEEE
Q 007764 282 LAGESES-----NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIV 347 (590)
Q Consensus 282 ~~g~~~~-----~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~v 347 (590)
..|.... .-+.+....+....+|+|+||+|.+. ..+.+.|++.|+.-. .-.++++
T Consensus 533 LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 533 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred HcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh-----------HHHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 2221100 11122233344455899999999873 346677888776321 1136778
Q ss_pred EeecCCC-------------------------CCCchhhhccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 348 IGATNRP-------------------------NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 348 I~~tn~~-------------------------~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
|.|||.- ..+.|.+.. |++..+.|++.+.+...+|+...+
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 8888832 113355554 999999999999998888886544
No 174
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.1e-09 Score=118.91 Aligned_cols=176 Identities=19% Similarity=0.278 Sum_probs=118.1
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~----------- 269 (590)
+..+..|+++.|.+..++.|+.++... .-+.++||+||+|+|||++|+++|+.+...
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 345678999999999999998888652 123479999999999999999999998652
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHH
Q 007764 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (590)
Q Consensus 270 ---------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 330 (590)
++.++. .....-..++.++..+.. ....|+||||+|.+- ....+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~n 139 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFN 139 (620)
T ss_pred ccHHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHH
Confidence 112211 112234567777766542 234699999999773 12346
Q ss_pred HHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCC--CCCCccCHHHHHHhcC
Q 007764 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM--KLSDDVDLERIAKDTH 408 (590)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~--~~~~~~~l~~la~~t~ 408 (590)
.|+..++... ..+++|.+|+.+..+-+.+++ |+ ..++|..++..+....+....... .+. ...+..++..+.
T Consensus 140 aLLK~LEePp--~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is-~~al~~La~~s~ 213 (620)
T PRK14948 140 ALLKTLEEPP--PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIE-PEALTLVAQRSQ 213 (620)
T ss_pred HHHHHHhcCC--cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcC
Confidence 6777777532 356666677777778888876 66 667888888877666665444332 222 233666666666
Q ss_pred CCC
Q 007764 409 GYV 411 (590)
Q Consensus 409 g~~ 411 (590)
|-.
T Consensus 214 G~l 216 (620)
T PRK14948 214 GGL 216 (620)
T ss_pred CCH
Confidence 644
No 175
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.10 E-value=3.2e-10 Score=122.45 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.++..+.|+|++|+|||||.+.|+++.
T Consensus 23 ~l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 23 SLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred cceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3567889999999999999999999999876
No 176
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.09 E-value=8.7e-11 Score=109.00 Aligned_cols=72 Identities=31% Similarity=0.453 Sum_probs=51.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHhCC----cEEEEeccchhhhhccchHHHHHHHHH------HHhhCCCeEEEEcc
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFD------KARQSAPCVLFFDE 582 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~~~----~~i~v~~~el~~~~vGese~~ir~~f~------~Ar~~~p~vlf~DE 582 (590)
+|...++|+||+|||||.||++||..+.. +++.++++++-. -++.+..+.++.- .+.+. .||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~--gVVllDE 76 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEG--GVVLLDE 76 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHH--TEEEEET
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc--cchHHhhhhhhhhcccceeeccch--hhhhhHH
Confidence 35667999999999999999999999996 999999998765 1111222222222 12222 2999999
Q ss_pred cccccc
Q 007764 583 LDSIAT 588 (590)
Q Consensus 583 id~l~~ 588 (590)
||+++|
T Consensus 77 idKa~~ 82 (171)
T PF07724_consen 77 IDKAHP 82 (171)
T ss_dssp GGGCSH
T ss_pred Hhhccc
Confidence 999998
No 177
>PRK06620 hypothetical protein; Validated
Probab=99.09 E-value=2.4e-09 Score=103.28 Aligned_cols=134 Identities=16% Similarity=0.273 Sum_probs=89.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch
Q 007764 243 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 322 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~ 322 (590)
..++||||||||||+|++++++..+..++. .... . . ..+ ....+|+|||+|.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----~--~----~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----N--E----EIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----c--h----hHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999987753322 1110 0 0 111 233689999999441
Q ss_pred hHHHHHHHHHHHhhhccccCCeEEEEeecCCCCC--CchhhhccCCC--ceEEEecCCCHHHHHHHHHHHhcC--CCCCC
Q 007764 323 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS--IDPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKN--MKLSD 396 (590)
Q Consensus 323 ~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~--ld~al~r~gRf--~~~i~i~~P~~~~r~~Il~~~~~~--~~~~~ 396 (590)
. ..|..+++.+...+..++++++..|.. + +++++ |+ ...+.+..|+.+.+..+++..... +.+.+
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 0 245556565556666777877776654 4 67776 55 347899999999999999876543 33333
Q ss_pred ccCHHHHHHhcCCCCH
Q 007764 397 DVDLERIAKDTHGYVG 412 (590)
Q Consensus 397 ~~~l~~la~~t~g~~~ 412 (590)
..+..++....+-..
T Consensus 170 -ev~~~L~~~~~~d~r 184 (214)
T PRK06620 170 -QIIDFLLVNLPREYS 184 (214)
T ss_pred -HHHHHHHHHccCCHH
Confidence 336777777665443
No 178
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=1.3e-09 Score=115.43 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=113.9
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~----------- 269 (590)
+..+.+|+++.|.+..++.|+.++... .-+..+||+||||+||||+|+++|+.+...
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 345678999999999999998888642 224569999999999999999999998542
Q ss_pred ---------------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhH
Q 007764 270 ---------------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEV 324 (590)
Q Consensus 270 ---------------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~ 324 (590)
++.+++.. ...-..++.+.+.+. .....++||||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------
Confidence 11111110 011234555444442 22346999999998742
Q ss_pred HHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-CCccCHHHH
Q 007764 325 ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERI 403 (590)
Q Consensus 325 ~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-~~~~~l~~l 403 (590)
...+.|+..++.... ..++|.+++.+..+-+.+++ |. ..+++..++..+....+...++.... -++..+..+
T Consensus 142 --~~~~~LLk~LEep~~--~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 142 --AAFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred --HHHHHHHHHHhcCCC--CeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 123456666654322 44444455666777777776 55 46888888888877777765543332 233446777
Q ss_pred HHhcCCCCH
Q 007764 404 AKDTHGYVG 412 (590)
Q Consensus 404 a~~t~g~~~ 412 (590)
+..+.|..+
T Consensus 215 ~~~s~g~lr 223 (397)
T PRK14955 215 GRKAQGSMR 223 (397)
T ss_pred HHHcCCCHH
Confidence 777776544
No 179
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.09 E-value=1.3e-10 Score=133.72 Aligned_cols=97 Identities=26% Similarity=0.434 Sum_probs=78.3
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh----------CCcEEEEec
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v~~ 548 (590)
.|+.+.|.++.-+.+.+. +..+...+++|+||||||||++|+.+|... +..++.+++
T Consensus 177 ~~~~~igr~~ei~~~~~~-------------L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQI-------------LGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHH-------------HcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 455666655544444433 233455689999999999999999999987 367999999
Q ss_pred cchh--hhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 549 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 549 ~el~--~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
..++ .+|.|+.|+.++.+|+.++...++|||||||+.|..
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~ 285 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIG 285 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhc
Confidence 9887 589999999999999999888899999999998864
No 180
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.08 E-value=4.6e-10 Score=113.08 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=95.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh--ccchhHHH----------HHHHHHHHHhcCCeEEEEc
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK--LAGESESN----------LRKAFEEAEKNAPSIIFID 308 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~--~~g~~~~~----------~~~~f~~a~~~~p~iL~iD 308 (590)
.+++|+|.||||||||++++.+|..++.+++.+++...... ..|...-. ....+..|. ..+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 46789999999999999999999999999999988655443 33321100 111223332 346789999
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHHhhhc------------cccCCeEEEEeecCCCC------------CCchhhhcc
Q 007764 309 EIDSIAPKREKTHGEVERRIVSQLLTLMDG------------LKSRAHVIVIGATNRPN------------SIDPALRRF 364 (590)
Q Consensus 309 Eid~l~~~~~~~~~~~~~~v~~~Ll~~ld~------------~~~~~~v~vI~~tn~~~------------~ld~al~r~ 364 (590)
|+|..-++ +...|..+++. +.....+.+|+|+|+.+ .+++++..
T Consensus 142 Ein~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99976432 22333333331 12344688999999864 34678877
Q ss_pred CCCceEEEecCCCHHHHHHHHHHHhcC
Q 007764 365 GRFDREIDIGVPDEVGRLEVLRIHTKN 391 (590)
Q Consensus 365 gRf~~~i~i~~P~~~~r~~Il~~~~~~ 391 (590)
||...+.++.|+.+.-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999866543
No 181
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=4.8e-09 Score=115.34 Aligned_cols=183 Identities=20% Similarity=0.200 Sum_probs=120.1
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEe-------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCIN------- 274 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~------- 274 (590)
..+-+|+++.|.+..++.|+.++..- ..+..+||+||+|+|||++|+++|+.+++.....+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 45678999999999999998888642 23568999999999999999999998864321111
Q ss_pred ------chhhhhhc----------cchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHH
Q 007764 275 ------GPEIMSKL----------AGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 334 (590)
Q Consensus 275 ------~~~l~~~~----------~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~ 334 (590)
|..+.... ....-..++.+++.+.. ....|+||||+|.+.. ...+.|+.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLLK 154 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALLK 154 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHHH
Confidence 11111100 00113456666665542 2356999999998732 23466777
Q ss_pred hhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 335 LMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 335 ~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
.|+.... .+++|.+|+.++.+.+.+++ |+ ..+++..++..+....+...++..... ++..+..++..+.|...
T Consensus 155 tLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr 228 (598)
T PRK09111 155 TLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVR 228 (598)
T ss_pred HHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 7766433 45555566666777777776 66 678999999998888887665443322 22345666777666543
No 182
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=4.9e-09 Score=115.45 Aligned_cols=183 Identities=17% Similarity=0.235 Sum_probs=115.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE----------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF---------- 271 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~---------- 271 (590)
..+.+|+++.|++..++.|+.++... .-+..+||+||+|+||||+|+++|+.+.+..-
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 45678999999999999998877542 22457999999999999999999999865210
Q ss_pred -E-----Eechhhhh-------hccc---hhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhHHHHHHHH
Q 007764 272 -C-----INGPEIMS-------KLAG---ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (590)
Q Consensus 272 -~-----v~~~~l~~-------~~~g---~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (590)
. -+|..+.. .+.+ ..-..++.+.+.. ......|++|||+|.+.. ...+.
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~na 146 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFNA 146 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHHH
Confidence 0 00000000 0001 1123455544444 223456999999988742 22456
Q ss_pred HHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-CCccCHHHHHHhcCCC
Q 007764 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (590)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~t~g~ 410 (590)
|+..++.... .+++|.+|+.+..+-+.+++ |. ..+++..++..+....+...+..... -++..+..++..+.|.
T Consensus 147 LLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gd 221 (620)
T PRK14954 147 FLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGS 221 (620)
T ss_pred HHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 7777766433 34444455666778888876 55 67899999988877777655443222 2334467777777765
Q ss_pred CH
Q 007764 411 VG 412 (590)
Q Consensus 411 ~~ 412 (590)
.+
T Consensus 222 lr 223 (620)
T PRK14954 222 MR 223 (620)
T ss_pred HH
Confidence 44
No 183
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.07 E-value=7.3e-10 Score=98.84 Aligned_cols=128 Identities=38% Similarity=0.510 Sum_probs=81.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEechhhhhh--------------ccchhHHHHHHHHHHHHhcCCeE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 304 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~---~~~v~~~~l~~~--------------~~g~~~~~~~~~f~~a~~~~p~i 304 (590)
+..++|+||||||||++++.++..+... ++.+++...... .........+..++.++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999998765 777777654321 12334556677888888877899
Q ss_pred EEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCC-CCCCchhhhccCCCceEEEecCC
Q 007764 305 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-PNSIDPALRRFGRFDREIDIGVP 376 (590)
Q Consensus 305 L~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~-~~~ld~al~r~gRf~~~i~i~~P 376 (590)
+++||++.+......... ...................+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALL-----LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHH-----HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988654321100 00000001111223345677778885 2334445554 78777776544
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.06 E-value=4.2e-09 Score=109.00 Aligned_cols=157 Identities=24% Similarity=0.407 Sum_probs=108.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
+...++||||.|+|||+|++++++.. +..++++...++...++......-..-|.+-- .-.+++||+++++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 35689999999999999999999885 34588888888776665544443333444444 456999999999976
Q ss_pred CCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC---chhhhccCCCceEEEecCCCHHHHHHHHHHHhc--
Q 007764 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK-- 390 (590)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l---d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~-- 390 (590)
+.. ....++..++.+...++-+++.+...|..+ .+.|++.......+.+.+|+.+.|..||+....
T Consensus 190 k~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 190 KER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred Chh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 532 235566666666666666666666667655 578877333456789999999999999987554
Q ss_pred CCCCCCccCHHHHHHhcCC
Q 007764 391 NMKLSDDVDLERIAKDTHG 409 (590)
Q Consensus 391 ~~~~~~~~~l~~la~~t~g 409 (590)
++.+.+++ +..++.....
T Consensus 261 ~~~i~~ev-~~~la~~~~~ 278 (408)
T COG0593 261 GIEIPDEV-LEFLAKRLDR 278 (408)
T ss_pred CCCCCHHH-HHHHHHHhhc
Confidence 44443333 5556655543
No 185
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=6.3e-09 Score=112.19 Aligned_cols=184 Identities=19% Similarity=0.226 Sum_probs=120.5
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------- 268 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~------------- 268 (590)
..+.+|+++.|.+..++.|+..+... .-+..+|||||+|+|||++|+++++.+..
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 45678999999999999998888542 22456799999999999999999998732
Q ss_pred -----------eEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 269 -----------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 269 -----------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
.++.+++..- ..-..++.+...... ....|++|||+|.+. ....+.|+
T Consensus 76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALL 138 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALL 138 (535)
T ss_pred HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHH
Confidence 1233322110 012345555544321 233599999998773 23346677
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..++.... .+.+|.+|+.+..+.+.+++ |. ..+++..++.++....+...+...... ++..+..++..+.|-.
T Consensus 139 K~LEEpp~--~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~Gdl- 212 (535)
T PRK08451 139 KTLEEPPS--YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSL- 212 (535)
T ss_pred HHHhhcCC--ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH-
Confidence 77776533 34555556667888898887 75 688999999888877777555433222 3345677777777643
Q ss_pred HHHHHHHH
Q 007764 413 ADLAALCT 420 (590)
Q Consensus 413 ~dl~~l~~ 420 (590)
+++..++.
T Consensus 213 R~alnlLd 220 (535)
T PRK08451 213 RDTLTLLD 220 (535)
T ss_pred HHHHHHHH
Confidence 33334443
No 186
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.06 E-value=1.1e-09 Score=113.89 Aligned_cols=31 Identities=35% Similarity=0.637 Sum_probs=27.7
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 509 ~~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
.+|+.+...+.++||||||||||.|.+-+..
T Consensus 410 ~fgid~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 410 NFGIDLDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred hcccCcccceeEecCCCCchhhhHHHHhhcc
Confidence 3577788899999999999999999998877
No 187
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=3.3e-09 Score=113.73 Aligned_cols=201 Identities=22% Similarity=0.308 Sum_probs=126.4
Q ss_pred CCCCcccccchHHHHHHHHHHHHc---cc--------------CChhhhh----hhCCCCCceEEEECCCCCcHHHHHHH
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVEL---PL--------------RHPQLFK----SIGVKPPKGILLYGPPGSGKTLIARA 261 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~---~~--------------~~~~~~~----~l~i~~~~~vLL~GppGtGKTtla~~ 261 (590)
.+-.|.|+-|-+..-+.+-.++.. .. ...+++. ..+-++.+-+||+||||-||||||+.
T Consensus 266 ~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 266 RPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred ChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHH
Confidence 445677788877776666555441 00 0111221 12334556799999999999999999
Q ss_pred HHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhh
Q 007764 262 VANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (590)
Q Consensus 262 la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (590)
+|+..|..++.||+++-.+. ....+++..+.+.- ...+|.+|++||||--. ...++.++.++.
T Consensus 346 iAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vdvilslv~ 412 (877)
T KOG1969|consen 346 IAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVDVILSLVK 412 (877)
T ss_pred HHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHHHHHHHHH
Confidence 99999999999999875432 12223333333221 12579999999999432 334455555543
Q ss_pred c-------ccc---------C---CeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCc-
Q 007764 338 G-------LKS---------R---AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDD- 397 (590)
Q Consensus 338 ~-------~~~---------~---~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~- 397 (590)
. -.. + -.-.||+.||.. .-|+|+-.--|...+.|..|......+-|+..+.+-.+..+
T Consensus 413 a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~ 490 (877)
T KOG1969|consen 413 ATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADS 490 (877)
T ss_pred hhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCH
Confidence 1 000 0 123478899975 67888765578888999999988777777766655444322
Q ss_pred cCHHHHHHhcCCCCHHHHHHH
Q 007764 398 VDLERIAKDTHGYVGADLAAL 418 (590)
Q Consensus 398 ~~l~~la~~t~g~~~~dl~~l 418 (590)
..+..|++.+.+-....+..|
T Consensus 491 ~aL~~L~el~~~DIRsCINtL 511 (877)
T KOG1969|consen 491 KALNALCELTQNDIRSCINTL 511 (877)
T ss_pred HHHHHHHHHhcchHHHHHHHH
Confidence 346677777776655555433
No 188
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.4e-10 Score=111.36 Aligned_cols=105 Identities=28% Similarity=0.459 Sum_probs=75.1
Q ss_pred ccccccchhhhcccceeecccCChhhhhhc----CCCC-CceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh-hh
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKF----GMSP-SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TM 554 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~----~~~~-~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~-~~ 554 (590)
+++.|++..|+.|.-+|. .|-.++... .+.. .+++||.||+|||||+||+.||..++.||---+...|- .-
T Consensus 61 ~YVIGQe~AKKvLsVAVY---NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVY---NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeeh---hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 567889999888876653 222222211 1222 24599999999999999999999999999888877664 46
Q ss_pred hccch-HHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 555 WFGES-EANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 555 ~vGes-e~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
||||. |.-+-++.+.|- .+...||++||||+++.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 99998 444556655432 22335999999999985
No 189
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.02 E-value=9.4e-10 Score=112.44 Aligned_cols=159 Identities=25% Similarity=0.411 Sum_probs=99.1
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCC-ceEEEECCCCCcHHHHHHHHHHHhCC-------e--EEE
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP-KGILLYGPPGSGKTLIARAVANETGA-------F--FFC 272 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~-~~vLL~GppGtGKTtla~~la~~~~~-------~--~~~ 272 (590)
.+..|++|.|+++.++.+.-.... ++ .++||.|+||+|||++++++++.++. + +..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 356788999999998877543321 23 58999999999999999999999842 1 111
Q ss_pred Eec-hhh--------hh---------------hccch--hHHHH---HHHHHH--HHhcCCeEEEEcccccccCCCCCCc
Q 007764 273 ING-PEI--------MS---------------KLAGE--SESNL---RKAFEE--AEKNAPSIIFIDEIDSIAPKREKTH 321 (590)
Q Consensus 273 v~~-~~l--------~~---------------~~~g~--~~~~~---~~~f~~--a~~~~p~iL~iDEid~l~~~~~~~~ 321 (590)
+.+ ++. .. ...|. .+..+ +..|+. .......+||+||++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~------- 141 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE------- 141 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-------
Confidence 110 000 00 01110 00000 000110 000112489999999764
Q ss_pred hhHHHHHHHHHHHhhhccc-----------cCCeEEEEeecCCCC-CCchhhhccCCCceEEEecCCCH-HHHHHHHHHH
Q 007764 322 GEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVLRIH 388 (590)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P~~-~~r~~Il~~~ 388 (590)
.+..+.|+..|+.-. ....+++++++|+.+ .+++++.. ||...+.++.|.. ++|.+|+...
T Consensus 142 ----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 142 ----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 244566667665321 224688899988755 57888887 9999999998877 8889999764
No 190
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1e-08 Score=113.80 Aligned_cols=176 Identities=19% Similarity=0.272 Sum_probs=113.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE----------
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~---------- 270 (590)
+..+.+|+++.|++..++.|+.++... ..+..+||+||+|+|||++|+.+|+.++...
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 345678999999999999998887642 1245689999999999999999999875321
Q ss_pred ---------------EEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHH
Q 007764 271 ---------------FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (590)
Q Consensus 271 ---------------~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (590)
+.+++.. ...-..++.+.+.+.. ....|+||||+|.+.. ...+.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~na 139 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNA 139 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHH
Confidence 1222110 0112334444433322 3346999999997742 23456
Q ss_pred HHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCC
Q 007764 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (590)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~ 410 (590)
|+..++.... .+++|.+++..+.+.+.+++ |+ ..++|..++..+...++.......... ++..+..++..+.|.
T Consensus 140 LLk~LEepp~--~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gd 214 (585)
T PRK14950 140 LLKTLEEPPP--HAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGS 214 (585)
T ss_pred HHHHHhcCCC--CeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 7777766433 45555556666667777765 55 568899999888888777665443322 223356666666663
No 191
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.01 E-value=1.9e-10 Score=103.43 Aligned_cols=109 Identities=28% Similarity=0.464 Sum_probs=68.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh--hccchhHHH-------HHHHHHHHHhcCCeEEEEccccccc
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--KLAGESESN-------LRKAFEEAEKNAPSIIFIDEIDSIA 314 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~--~~~g~~~~~-------~~~~f~~a~~~~p~iL~iDEid~l~ 314 (590)
+|+|+||||||||++++.+|+.++.+++.+++..... ...|..... -..+.+.. ..+.+++|||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 5899999999999999999999999998888765322 111111100 00000011 146799999998652
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhccc-----------cCC------eEEEEeecCCCC----CCchhhhccCCC
Q 007764 315 PKREKTHGEVERRIVSQLLTLMDGLK-----------SRA------HVIVIGATNRPN----SIDPALRRFGRF 367 (590)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~------~v~vI~~tn~~~----~ld~al~r~gRf 367 (590)
..+...|+.+++.-. ... ++.+|+|+|+.+ .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 344555555554311 111 389999999988 88999988 76
No 192
>PRK09087 hypothetical protein; Validated
Probab=99.01 E-value=3.5e-09 Score=103.03 Aligned_cols=141 Identities=23% Similarity=0.290 Sum_probs=92.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~ 321 (590)
...++|+||+|||||||+++++...+..+ ++..++... .+..... .+|++||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC-----
Confidence 34699999999999999999998876553 333222111 1111111 38999999976211
Q ss_pred hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC---chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-Cc
Q 007764 322 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DD 397 (590)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l---d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~ 397 (590)
...|+.+++........++++++..|..+ .+.+++.......+++..|+.+.|.++++..+....+. ++
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 13466677666666667777777666533 56777622335889999999999999999877544332 23
Q ss_pred cCHHHHHHhcCCC
Q 007764 398 VDLERIAKDTHGY 410 (590)
Q Consensus 398 ~~l~~la~~t~g~ 410 (590)
..+..++....+-
T Consensus 176 ev~~~La~~~~r~ 188 (226)
T PRK09087 176 HVVYYLVSRMERS 188 (226)
T ss_pred HHHHHHHHHhhhh
Confidence 3466777766643
No 193
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.00 E-value=1.4e-08 Score=95.72 Aligned_cols=168 Identities=21% Similarity=0.273 Sum_probs=119.2
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~ 277 (590)
..+.+.+.+|.|++.+++.|.+-...... -.+..+|||+|..|||||+|++++-++. +...++|+..+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~---------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE---------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc---------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 34568889999999999998655443221 1456799999999999999999998886 45678888877
Q ss_pred hhhhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--cCCeEEEEeecCCC
Q 007764 278 IMSKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRP 354 (590)
Q Consensus 278 l~~~~~g~~~~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~v~vI~~tn~~ 354 (590)
+.. +-.+++..+. ...-|||+|++.+= .. ......|...++|-. ...+|++-+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe--~g--------d~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFE--EG--------DDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCC--CC--------chHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 654 2334444433 34569999997642 11 122345666666533 23489999999988
Q ss_pred CCCch--------------------hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCC
Q 007764 355 NSIDP--------------------ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD 396 (590)
Q Consensus 355 ~~ld~--------------------al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~ 396 (590)
..++. .+.-..||.--+.|.+++.++.+.|+..+.+.+.+..
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 65542 1222359999999999999999999998888777654
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.98 E-value=1.3e-09 Score=97.14 Aligned_cols=74 Identities=36% Similarity=0.556 Sum_probs=60.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCc---EEEEeccchhhh--------------hccchHHHHHHHHHHHhhCCCeE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTM--------------WFGESEANVREIFDKARQSAPCV 577 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~---~i~v~~~el~~~--------------~vGese~~ir~~f~~Ar~~~p~v 577 (590)
+..++|+||||||||++++.+|..+... ++.+.+...... .........+.+++.|+...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 777777654322 22345677889999999988899
Q ss_pred EEEcccccccc
Q 007764 578 LFFDELDSIAT 588 (590)
Q Consensus 578 lf~DEid~l~~ 588 (590)
||+||++++..
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999998865
No 195
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=2.8e-08 Score=102.84 Aligned_cols=184 Identities=18% Similarity=0.205 Sum_probs=117.3
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------EEEE--
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFCI-- 273 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~-------~~~v-- 273 (590)
.+..++++.|.++.++.+...+... .-+..+||+||+|+|||++|+.+|+.+... ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4567888999999999998888652 223479999999999999999999987541 1000
Q ss_pred --ech---hh--------h--hh---c------cchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhHH
Q 007764 274 --NGP---EI--------M--SK---L------AGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVE 325 (590)
Q Consensus 274 --~~~---~l--------~--~~---~------~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~ 325 (590)
++. .+ . .. . ..-.-+.++.+.+.. ..+...|++|||+|.+-.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 010 00 0 00 0 000113344433322 234456999999998732
Q ss_pred HHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHH
Q 007764 326 RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAK 405 (590)
Q Consensus 326 ~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~ 405 (590)
...+.|+..++.... +.++|..|+.++.+.+.+++ |+ ..+.+++|+.++..++|........ .++..+..++.
T Consensus 156 -~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 156 -NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred -HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 234667788876443 34444456778888888887 87 6899999999999999986432222 11233566777
Q ss_pred hcCCCCHHHH
Q 007764 406 DTHGYVGADL 415 (590)
Q Consensus 406 ~t~g~~~~dl 415 (590)
.+.|.....+
T Consensus 229 ~s~G~pr~Al 238 (351)
T PRK09112 229 RSKGSVRKAL 238 (351)
T ss_pred HcCCCHHHHH
Confidence 7777655443
No 196
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.96 E-value=9.1e-09 Score=107.59 Aligned_cols=141 Identities=26% Similarity=0.400 Sum_probs=84.4
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----E--EEEec----
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----F--FCING---- 275 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~-----~--~~v~~---- 275 (590)
++++.+-+...+.+...+. .+++++|+||||||||++|+.+|..+... + +.++.
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4456666666666644442 35799999999999999999999987431 1 22221
Q ss_pred hhhhhhc----cch--hHHHHHHHHHHHHh--cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhh----------
Q 007764 276 PEIMSKL----AGE--SESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD---------- 337 (590)
Q Consensus 276 ~~l~~~~----~g~--~~~~~~~~f~~a~~--~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---------- 337 (590)
.+++..+ .|- ....+...++.|.. ..|.++||||++..-.. ++...++++++
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~----------kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS----------KVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH----------Hhhhhhhhhccccccccccce
Confidence 1222111 110 01123334455544 35789999999865322 12222233322
Q ss_pred ----------ccccCCeEEEEeecCCCC----CCchhhhccCCCceEEEecC
Q 007764 338 ----------GLKSRAHVIVIGATNRPN----SIDPALRRFGRFDREIDIGV 375 (590)
Q Consensus 338 ----------~~~~~~~v~vI~~tn~~~----~ld~al~r~gRf~~~i~i~~ 375 (590)
.+....++.+|||+|..+ .+|.|++| ||. .+++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 233345899999999887 78999999 883 355543
No 197
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.95 E-value=6.4e-09 Score=118.29 Aligned_cols=134 Identities=24% Similarity=0.314 Sum_probs=92.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh------hhhhccchh----HHHHHHHHHHHHhcCCeEEEEcc
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE------IMSKLAGES----ESNLRKAFEEAEKNAPSIIFIDE 309 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~------l~~~~~g~~----~~~~~~~f~~a~~~~p~iL~iDE 309 (590)
....++||.||..+|||+++..+|.+.|..|+.||..+ .++.|+.+. +-+-+.+.+..+++ ..+++||
T Consensus 886 ~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDE 963 (4600)
T COG5271 886 LSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDE 963 (4600)
T ss_pred hcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeec
Confidence 34568999999999999999999999999999998643 333333221 11222333333333 3899999
Q ss_pred cccccCCCCCCchhHHHHHHHHHHHhhhccc------------cCCeEEEEeecCCCC------CCchhhhccCCCceEE
Q 007764 310 IDSIAPKREKTHGEVERRIVSQLLTLMDGLK------------SRAHVIVIGATNRPN------SIDPALRRFGRFDREI 371 (590)
Q Consensus 310 id~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------------~~~~v~vI~~tn~~~------~ld~al~r~gRf~~~i 371 (590)
+...+ ..+++.|..++|.-+ ...++.+.||-|+|. .+..|+|. || .++
T Consensus 964 LNLAp-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~ 1029 (4600)
T COG5271 964 LNLAP-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEM 1029 (4600)
T ss_pred cccCc-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhh
Confidence 87432 246677777777543 345678888889885 35677776 88 567
Q ss_pred EecCCCHHHHHHHHHHHh
Q 007764 372 DIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 372 ~i~~P~~~~r~~Il~~~~ 389 (590)
+|..-.+.+...||...+
T Consensus 1030 hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1030 HFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred hcccCcHHHHHHHHhccC
Confidence 777777788888887544
No 198
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.94 E-value=7.3e-10 Score=114.59 Aligned_cols=95 Identities=33% Similarity=0.488 Sum_probs=71.1
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vG 557 (590)
.+|+++.|+++.++.+...+..... .-.++.+++||||||||||++|+++|.+++.++..+.++.+-
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 4788899999999888776542111 123567899999999999999999999999998888776432
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 558 ESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 558 ese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
....+..++.... .++|||||||+.+.+
T Consensus 89 -~~~~l~~~l~~l~--~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 89 -KPGDLAAILTNLE--EGDVLFIDEIHRLSP 116 (328)
T ss_pred -ChHHHHHHHHhcc--cCCEEEEecHhhcch
Confidence 2334556665543 457999999998864
No 199
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=3.1e-08 Score=109.78 Aligned_cols=177 Identities=20% Similarity=0.277 Sum_probs=118.2
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+.+|++|.|.+..++.|+..+... .-+..+|||||+|+|||++|+++|+.+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 35678999999999999998888642 124569999999999999999999987521
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHH
Q 007764 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (590)
Q Consensus 270 -------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (590)
++.+++.. ...-..++.+...+.. ...-|++|||+|.+.. ...+.|
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naL 141 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAF 141 (614)
T ss_pred hHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHH
Confidence 22232211 0112445666655432 2345999999998732 234667
Q ss_pred HHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCC
Q 007764 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (590)
Q Consensus 333 l~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (590)
+..++.... ..++|.+|+.+..+-+.+++ |. ..+++..++..+....+...+....+. +...+..++..+.|-.
T Consensus 142 LK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdl 216 (614)
T PRK14971 142 LKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGM 216 (614)
T ss_pred HHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 777776433 44555566666788888887 65 668999999888877777655444333 2234667777776644
Q ss_pred H
Q 007764 412 G 412 (590)
Q Consensus 412 ~ 412 (590)
+
T Consensus 217 r 217 (614)
T PRK14971 217 R 217 (614)
T ss_pred H
Confidence 4
No 200
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.92 E-value=4.1e-08 Score=112.89 Aligned_cols=195 Identities=21% Similarity=0.276 Sum_probs=120.1
Q ss_pred ccccchHHHHHHHHHHHHcc---cCChhhhhhhCCCCCc-eEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q 007764 208 DDVGGVRKQMAQIRELVELP---LRHPQLFKSIGVKPPK-GILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~l~i~~~~-~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~ 280 (590)
..+.|++..++.+.+.+... +..| ..|. .+||+||||+|||.+|+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~--------~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDP--------RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCC--------CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 35899999999998887543 2222 2233 48999999999999999999998 34688899877643
Q ss_pred h------------ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--------
Q 007764 281 K------------LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 340 (590)
Q Consensus 281 ~------------~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 340 (590)
. |.|..+. +.+....+.+..+||+|||++..- ..+.+.|++.++.-.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~-----------~~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH-----------PDVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC-----------HHHHHHHHHHhhcceeecCCCcE
Confidence 2 2222111 122334455667899999998542 345566777776432
Q ss_pred -cCCeEEEEeecCCCC-----------------------------CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhc
Q 007764 341 -SRAHVIVIGATNRPN-----------------------------SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (590)
Q Consensus 341 -~~~~v~vI~~tn~~~-----------------------------~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~ 390 (590)
.-.+.++|.|||... .+.|++.. |++ .+.|.+.+.+...+|+.....
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 113567777877421 02234443 886 788999999999888875543
Q ss_pred CC--------C--CC-CccCHHHHHHhcCC--CCHHHHHHHHHHHHHHH
Q 007764 391 NM--------K--LS-DDVDLERIAKDTHG--YVGADLAALCTEAALQC 426 (590)
Q Consensus 391 ~~--------~--~~-~~~~l~~la~~t~g--~~~~dl~~l~~~a~~~~ 426 (590)
.+ . +. ++.-++.++....+ |-.+.+..++.......
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Confidence 21 1 11 12224455554432 34555655555544433
No 201
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.92 E-value=1e-09 Score=112.55 Aligned_cols=95 Identities=33% Similarity=0.472 Sum_probs=67.3
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccc
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 558 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGe 558 (590)
+|+++.|++++++.|...+..... .-.++.+++|+||||||||+||+++|.+++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 588999999999988776532111 1234567999999999999999999999998877766654321
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 559 SEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 559 se~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
...+...+.... .+.+||||||+.+.+.
T Consensus 69 -~~~l~~~l~~~~--~~~vl~iDEi~~l~~~ 96 (305)
T TIGR00635 69 -PGDLAAILTNLE--EGDVLFIDEIHRLSPA 96 (305)
T ss_pred -chhHHHHHHhcc--cCCEEEEehHhhhCHH
Confidence 122333333332 4579999999988653
No 202
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.7e-09 Score=116.15 Aligned_cols=99 Identities=26% Similarity=0.401 Sum_probs=74.8
Q ss_pred cccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch---------hhh
Q 007764 484 GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL---------LTM 554 (590)
Q Consensus 484 ggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el---------~~~ 554 (590)
-|++++|+.+.+.+... .+.+-..+.-+||+||||+|||+|+|.+|..++..|+++.---+ --.
T Consensus 326 YGLekVKeRIlEyLAV~-------~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 326 YGLEKVKERILEYLAVQ-------KLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cCchhHHHHHHHHHHHH-------HHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccc
Confidence 38889999887765321 11111223348999999999999999999999999998754322 124
Q ss_pred hccchHHHHHHHHHHHhhCCCeEEEEcccccccccC
Q 007764 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQV 590 (590)
Q Consensus 555 ~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~v 590 (590)
|+|.-...|=+-..+|...+| ++++||||++..++
T Consensus 399 YIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~ 433 (782)
T COG0466 399 YIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF 433 (782)
T ss_pred ccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC
Confidence 888777778888899988887 88999999998753
No 203
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.91 E-value=1.9e-09 Score=124.01 Aligned_cols=75 Identities=21% Similarity=0.458 Sum_probs=65.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh----------CCcEEEEeccchh--hhhccchHHHHHHHHHHHhh-CCCeEEEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELL--TMWFGESEANVREIFDKARQ-SAPCVLFF 580 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v~~~el~--~~~vGese~~ir~~f~~Ar~-~~p~vlf~ 580 (590)
...+++|+||||||||++|++||... +.+++.++...++ .+|.|+.|+.++++|+.+.. ..++||||
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfI 277 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 277 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEE
Confidence 44579999999999999999999987 6789999888877 57999999999999998654 56899999
Q ss_pred cccccccc
Q 007764 581 DELDSIAT 588 (590)
Q Consensus 581 DEid~l~~ 588 (590)
|||+.|.+
T Consensus 278 DEih~l~~ 285 (857)
T PRK10865 278 DELHTMVG 285 (857)
T ss_pred ecHHHhcc
Confidence 99999864
No 204
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.91 E-value=1.5e-08 Score=104.83 Aligned_cols=129 Identities=30% Similarity=0.431 Sum_probs=87.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh--hccchhHHHHH------------HHHHHHHhcCCeEEE
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--KLAGESESNLR------------KAFEEAEKNAPSIIF 306 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~--~~~g~~~~~~~------------~~f~~a~~~~p~iL~ 306 (590)
.+.++||-||||||||++++.+|..++.+++.+++..-+. ...|...-... -+|.... ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 4679999999999999999999999999999999864332 12222111111 0111111 4999
Q ss_pred EcccccccCCCCCCchhHHHHHHHHHHHhhhc----------cccCCeEEEEeecCC-----CCCCchhhhccCCCceEE
Q 007764 307 IDEIDSIAPKREKTHGEVERRIVSQLLTLMDG----------LKSRAHVIVIGATNR-----PNSIDPALRRFGRFDREI 371 (590)
Q Consensus 307 iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~----------~~~~~~v~vI~~tn~-----~~~ld~al~r~gRf~~~i 371 (590)
+|||+...+ .+.+.|+..|+. +.-...+++++|.|+ ...+++++.+ ||...+
T Consensus 118 ~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999986542 345667777765 333456788888894 3467889988 998999
Q ss_pred EecCCCH-HHHHHHHH
Q 007764 372 DIGVPDE-VGRLEVLR 386 (590)
Q Consensus 372 ~i~~P~~-~~r~~Il~ 386 (590)
.++.|+. .+...++.
T Consensus 185 ~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 185 YVDYPDSEEEERIILA 200 (329)
T ss_pred ecCCCCchHHHHHHHH
Confidence 9999954 44444443
No 205
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.90 E-value=1.6e-09 Score=122.95 Aligned_cols=101 Identities=23% Similarity=0.397 Sum_probs=75.2
Q ss_pred ccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh--------
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~-------- 552 (590)
.+.-|++++|+.+.+.+.... ..+-..+..++|+||||||||++++.+|+.++.+|+++......
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~-------~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQS-------RVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHH-------hcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 345689999998876544211 11222345699999999999999999999999999888654432
Q ss_pred -hhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 553 -~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
..|+|.....+.+.+.++....| |+||||||++.++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~ 431 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSD 431 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccc
Confidence 24778777777778877765555 8999999999864
No 206
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.90 E-value=5.4e-08 Score=96.41 Aligned_cols=200 Identities=18% Similarity=0.298 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechhh----
Q 007764 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEI---- 278 (590)
Q Consensus 212 G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~---------~~~~~v~~~~l---- 278 (590)
-..+.++.|.+++..|-.. ...++||+|++|.|||++++..+...+ .+++.+..+.-
T Consensus 41 ~A~~~L~~L~~Ll~~P~~~----------Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 41 RAKEALDRLEELLEYPKRH----------RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred HHHHHHHHHHHHHhCCccc----------CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 3445566667777666432 245799999999999999999987653 24566655321
Q ss_pred ------hh----hc--cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCC--e
Q 007764 279 ------MS----KL--AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA--H 344 (590)
Q Consensus 279 ------~~----~~--~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~--~ 344 (590)
+. .+ ..........+..-.+..++.+|+|||++.++... .... ..+++.+..+.... .
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs----~~~q----r~~Ln~LK~L~NeL~ip 182 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS----YRKQ----REFLNALKFLGNELQIP 182 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc----HHHH----HHHHHHHHHHhhccCCC
Confidence 11 01 11122223344455666778899999999976332 1112 33444444443333 4
Q ss_pred EEEEeecCCCCC--CchhhhccCCCceEEEecCCC-HHHHHHHHHHHhcCCCCCCcc------CHHHHHHhcCCCCHHHH
Q 007764 345 VIVIGATNRPNS--IDPALRRFGRFDREIDIGVPD-EVGRLEVLRIHTKNMKLSDDV------DLERIAKDTHGYVGADL 415 (590)
Q Consensus 345 v~vI~~tn~~~~--ld~al~r~gRf~~~i~i~~P~-~~~r~~Il~~~~~~~~~~~~~------~l~~la~~t~g~~~~dl 415 (590)
++.+|+..-... -|+.+.+ ||.. +.+|... .++...++......+++.... -...+...+.|..| ++
T Consensus 183 iV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l 258 (302)
T PF05621_consen 183 IVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-EL 258 (302)
T ss_pred eEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HH
Confidence 455554332222 2677776 8844 3344322 233445666666666654322 23566677888877 57
Q ss_pred HHHHHHHHHHHHHhcccc
Q 007764 416 AALCTEAALQCIREKMDV 433 (590)
Q Consensus 416 ~~l~~~a~~~~~~~~~~~ 433 (590)
..++..|+..+++...+.
T Consensus 259 ~~ll~~aA~~AI~sG~E~ 276 (302)
T PF05621_consen 259 SRLLNAAAIAAIRSGEER 276 (302)
T ss_pred HHHHHHHHHHHHhcCCce
Confidence 888889998888876543
No 207
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.90 E-value=8e-10 Score=114.06 Aligned_cols=95 Identities=24% Similarity=0.385 Sum_probs=69.6
Q ss_pred ccccccchhhhcccceeecccCChhhhhhcC-CCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh-hhcc-
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG- 557 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~-~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~-~~vG- 557 (590)
..+.|+++.++.+..++.............. -.++.++||+||||||||++|++||..++.+|+.++++++.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 3477888888888666532111000000000 012578999999999999999999999999999999999985 6999
Q ss_pred chHHHHHHHHHHHhhCCC
Q 007764 558 ESEANVREIFDKARQSAP 575 (590)
Q Consensus 558 ese~~ir~~f~~Ar~~~p 575 (590)
+.|..++++|+.|....|
T Consensus 95 d~e~~ir~L~~~A~~~~~ 112 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVR 112 (443)
T ss_pred CHHHHHHHHHHHHHHHhH
Confidence 668999999999965444
No 208
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.89 E-value=8.5e-09 Score=105.65 Aligned_cols=160 Identities=21% Similarity=0.349 Sum_probs=100.7
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------eEEE-Ee
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFFC-IN 274 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~-------~~~~-v~ 274 (590)
+...|++|+|+++.+..|.-.+..| ...++||.|++|||||+++++++..+.. +|.. -+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3568899999999988886555443 1248999999999999999999877632 1210 00
Q ss_pred chhh-----hhhc-------------------cchhHHHH------HHHHHHHH---------hcCCeEEEEcccccccC
Q 007764 275 GPEI-----MSKL-------------------AGESESNL------RKAFEEAE---------KNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 275 ~~~l-----~~~~-------------------~g~~~~~~------~~~f~~a~---------~~~p~iL~iDEid~l~~ 315 (590)
.++. .+.. .+.++.++ ...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 0110 0000 11122221 11111110 11236999999998753
Q ss_pred CCCCCchhHHHHHHHHHHHhhhcc-----------ccCCeEEEEeecCCCC-CCchhhhccCCCceEEEecCCC-HHHHH
Q 007764 316 KREKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRL 382 (590)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P~-~~~r~ 382 (590)
.....|+..|+.- ....+++++++.|+.+ .+.+++.. ||...+.+..|. .+.+.
T Consensus 159 -----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 -----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred -----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 3345566665431 1124678888888665 58888887 999999999998 58999
Q ss_pred HHHHHH
Q 007764 383 EVLRIH 388 (590)
Q Consensus 383 ~Il~~~ 388 (590)
+|++..
T Consensus 226 ~il~~~ 231 (350)
T CHL00081 226 KIVEQR 231 (350)
T ss_pred HHHHhh
Confidence 999764
No 209
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=7.4e-08 Score=100.21 Aligned_cols=181 Identities=17% Similarity=0.200 Sum_probs=116.4
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------------
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------- 269 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------- 269 (590)
.+..+++|.|.++.++.|.+.+... .-+..+||+||+|+||+++|.++|+.+-..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4557889999999999998887652 224579999999999999999999886321
Q ss_pred ---------------------EEEEec--hhhhhhc-cchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCc
Q 007764 270 ---------------------FFCING--PEIMSKL-AGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH 321 (590)
Q Consensus 270 ---------------------~~~v~~--~~l~~~~-~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~ 321 (590)
++.+.. .+-.++. ..-.-+.+|.+.+.. ....+.|++|||+|.+-
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 011110 0000000 000123355544433 23567899999999763
Q ss_pred hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHH
Q 007764 322 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLE 401 (590)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~ 401 (590)
....+.|+..+.... ...++|.+|+.++.+.+.+++ |+ ..+.++.|+.++-.+.+...... ..+..+.
T Consensus 155 ----~~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 234466777777533 345566678888888888876 66 78999999999998888765321 1112234
Q ss_pred HHHHhcCCCCHHH
Q 007764 402 RIAKDTHGYVGAD 414 (590)
Q Consensus 402 ~la~~t~g~~~~d 414 (590)
.++..+.|-.+.-
T Consensus 223 ~l~~~s~Gsp~~A 235 (365)
T PRK07471 223 ALAALAEGSVGRA 235 (365)
T ss_pred HHHHHcCCCHHHH
Confidence 6666777765543
No 210
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=3.9e-09 Score=118.52 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.++..+.|+||+|+|||||++.|++..
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567889999999999999999999999975
No 211
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.88 E-value=2.9e-08 Score=100.05 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=52.8
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhCC-cEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~-~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+.++++..+.++|.+|||||||.++|...... --|.+.|.++- |.+.+.++-+ ...-.|+|=|-.-||.|
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~----~~~~~~mrpl-----R~~mQvVFQDPygSLsP 378 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID----GLSRKEMRPL-----RRRMQVVFQDPYGSLSP 378 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccc----ccChhhhhhh-----hhhceEEEeCCCCCCCc
Confidence 45667888999999999999999999987743 46777777753 3455555543 22336999999998877
Q ss_pred c
Q 007764 589 Q 589 (590)
Q Consensus 589 ~ 589 (590)
-
T Consensus 379 R 379 (534)
T COG4172 379 R 379 (534)
T ss_pred c
Confidence 3
No 212
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.87 E-value=7.7e-09 Score=96.01 Aligned_cols=112 Identities=26% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC----eEEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEccccc
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGA----FFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDS 312 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~----~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~ 312 (590)
|...++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+...+..+ ......|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457999999999999999999999985 8999999888761 11111111111111 111123999999999
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhhhccc---------cCCeEEEEeecCCC
Q 007764 313 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRP 354 (590)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~vI~~tn~~ 354 (590)
+.+......+.....+.+.|++.+++-. .-.++++|.|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9886433334444567778888886422 12367888888864
No 213
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.86 E-value=3.4e-08 Score=93.70 Aligned_cols=143 Identities=18% Similarity=0.263 Sum_probs=92.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a 297 (590)
+..+||+||+|+|||++++.+++.+... +..+.... . .-.-+.++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHHH
Confidence 4579999999999999999999987431 11111100 0 01124555555554
Q ss_pred Hh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEe
Q 007764 298 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (590)
Q Consensus 298 ~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i 373 (590)
.. ....+++|||+|.+.. ...+.|+..++.... ...+|.+++.+..+.+++++ |+ ..+++
T Consensus 89 ~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 43 3456999999988742 234567777766333 34444556666889999987 66 58999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCC
Q 007764 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 410 (590)
Q Consensus 374 ~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~ 410 (590)
.+|+.++..+++... + . ++..+..++..+.|.
T Consensus 153 ~~~~~~~~~~~l~~~--g--i-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G--I-SEEAAELLLALAGGS 184 (188)
T ss_pred CCCCHHHHHHHHHHc--C--C-CHHHHHHHHHHcCCC
Confidence 999999998888765 2 2 223355555555543
No 214
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.86 E-value=3.5e-09 Score=112.86 Aligned_cols=90 Identities=27% Similarity=0.527 Sum_probs=66.6
Q ss_pred ccccccccchhhhc---ccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh
Q 007764 479 NWEDIGGLENVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (590)
Q Consensus 479 ~~~~iggl~~vk~~---L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~ 555 (590)
+++++.|++++... |...+.. ....+++|+|||||||||+|+++|..++.+|+.++...
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~----- 71 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT----- 71 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-----
Confidence 45677787776444 5555421 12347999999999999999999999999999998753
Q ss_pred ccchHHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 556 FGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 556 vGese~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
.+...++++++.++ .....||||||+|.+.+
T Consensus 72 --~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 72 --SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK 106 (413)
T ss_pred --ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH
Confidence 23456777777774 23567999999998854
No 215
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=9.9e-08 Score=98.05 Aligned_cols=172 Identities=13% Similarity=0.186 Sum_probs=110.7
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--------eEEEEechh
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--------FFFCINGPE 277 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~--------~~~~v~~~~ 277 (590)
+|+++.|++..++.++..+... .-+..+||+||+|+|||++|+++++.+.+ .+..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5889999999999998887542 22457899999999999999999997632 122332210
Q ss_pred hhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCC
Q 007764 278 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (590)
Q Consensus 278 l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~ 353 (590)
++. -.-+.++.+.+.+ ......|++||++|.+- ....+.|+..++.... .+++|.+|+.
T Consensus 70 --~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEepp~--~t~~il~~~~ 132 (313)
T PRK05564 70 --KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEEPPK--GVFIILLCEN 132 (313)
T ss_pred --CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcCCCC--CeEEEEEeCC
Confidence 111 1123355555433 23345699999988763 2234678888876433 3444445567
Q ss_pred CCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCH
Q 007764 354 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 412 (590)
Q Consensus 354 ~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~ 412 (590)
++.+-+.+++ |. ..+++..|+.++....+....... ....+..++..+.|-.+
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHH
Confidence 7888888887 66 688999999988877776543321 12224455555555433
No 216
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.1e-09 Score=109.10 Aligned_cols=102 Identities=20% Similarity=0.401 Sum_probs=82.2
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vG 557 (590)
-+++.+.--.++|+.+.+-++.-.+..+-+.+.|..-.+|.|||||||||||++..|||++++.+..-+.-++.- .
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----~ 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----L 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----C
Confidence 445555555677888877777777778888999999999999999999999999999999999998877766642 2
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 558 ESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 558 ese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
.+| +|++...+... |||++.+||.-.
T Consensus 274 n~d--Lr~LL~~t~~k--SIivIEDIDcs~ 299 (457)
T KOG0743|consen 274 DSD--LRHLLLATPNK--SILLIEDIDCSF 299 (457)
T ss_pred cHH--HHHHHHhCCCC--cEEEEeeccccc
Confidence 233 99999888766 699999999753
No 217
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.85 E-value=2.7e-08 Score=102.08 Aligned_cols=157 Identities=22% Similarity=0.321 Sum_probs=95.8
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------eEE-------
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFF------- 271 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~-------~~~------- 271 (590)
.|..|.|+++.+..+.-.+..| ...+++|.|+||+||||+++++++.+.. ++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3677999999988774333222 2458999999999999999999988732 111
Q ss_pred --EEechhh----------------hhhccchhHHHHHHH--HHHH-------------HhcCCeEEEEcccccccCCCC
Q 007764 272 --CINGPEI----------------MSKLAGESESNLRKA--FEEA-------------EKNAPSIIFIDEIDSIAPKRE 318 (590)
Q Consensus 272 --~v~~~~l----------------~~~~~g~~~~~~~~~--f~~a-------------~~~~p~iL~iDEid~l~~~~~ 318 (590)
..+|... .....+.++..+-.. +... ......+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 0011100 000001111111000 1110 011235999999998732
Q ss_pred CCchhHHHHHHHHHHHhhhccc-----------cCCeEEEEeecCCCC-CCchhhhccCCCceEEEecCCCH-HHHHHHH
Q 007764 319 KTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVL 385 (590)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P~~-~~r~~Il 385 (590)
.....|+..|+.-. ...++++++++|..+ .+.+++.. ||...+.++.|.. ++|.+|+
T Consensus 146 --------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 --------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 34455666664311 123578888888655 68888887 9999999999976 8889998
Q ss_pred HHH
Q 007764 386 RIH 388 (590)
Q Consensus 386 ~~~ 388 (590)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 753
No 218
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.85 E-value=1.2e-07 Score=109.83 Aligned_cols=162 Identities=20% Similarity=0.310 Sum_probs=106.4
Q ss_pred ccccchHHHHHHHHHHHHccc---CChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 007764 208 DDVGGVRKQMAQIRELVELPL---RHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~---~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~ 281 (590)
..+.|++..++.+.+.+.... ..| -.|...+||+||+|||||++|++|+..+ +.+++.++++++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~-------~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDP-------NRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCC-------CCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc
Confidence 458999999999988876421 111 1234569999999999999999999987 457888888776432
Q ss_pred c-----cchhHH-----HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc---------cC
Q 007764 282 L-----AGESES-----NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SR 342 (590)
Q Consensus 282 ~-----~g~~~~-----~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~ 342 (590)
. .|.... ..+.+....+....+++++||++.+- ..+.+.|++.++.-. .-
T Consensus 638 ~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-----------~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-----------PDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred chHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-----------HHHHHHHHHHHhcCceecCCCeEEec
Confidence 1 111000 01223333344445799999998653 345566777775321 12
Q ss_pred CeEEEEeecCCCCC-------------------------CchhhhccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 343 AHVIVIGATNRPNS-------------------------IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 343 ~~v~vI~~tn~~~~-------------------------ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
.+.++|.|||.... +.|.|. .|++..+.+.+++.+...+|+....
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHH
Confidence 35678888887321 123343 4899999999999999988887543
No 219
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=2.6e-09 Score=111.90 Aligned_cols=103 Identities=27% Similarity=0.424 Sum_probs=72.5
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc----------------
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------------- 542 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~---------------- 542 (590)
.|++|.|++.+++.|+..+..+..+.. .++.+.+..+||+||+|+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999999999876554322 2344456679999999999999999999876432
Q ss_pred ------EEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 543 ------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 543 ------~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
-+.+-.++-. .+ .-..||++++.+... ...|+||||+|.+.+
T Consensus 80 ~~~~hpD~~~i~~~~~--~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~ 131 (394)
T PRK07940 80 LAGTHPDVRVVAPEGL--SI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE 131 (394)
T ss_pred hcCCCCCEEEeccccc--cC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH
Confidence 1111112111 11 124588999888753 346999999999865
No 220
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.3e-09 Score=106.57 Aligned_cols=74 Identities=31% Similarity=0.580 Sum_probs=62.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh-hhhccch-HHHHHHHHHHHh----hCCCeEEEEccccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~-~~~vGes-e~~ir~~f~~Ar----~~~p~vlf~DEid~l~~~ 589 (590)
.+|||.||+|+|||+||+.||..++.+|.-.++..|- .-||||. |.-|.++...|. ++...|+|+||+|+|+.+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4699999999999999999999999999999998774 4699998 778888887664 223459999999999853
No 221
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.8e-09 Score=106.93 Aligned_cols=73 Identities=33% Similarity=0.715 Sum_probs=60.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccc-hHHHHHHHHHHHhhCCCe-EEEEccccccc
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPC-VLFFDELDSIA 587 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGe-se~~ir~~f~~Ar~~~p~-vlf~DEid~l~ 587 (590)
.|-+++|||||||||||++||-||..+|+.+-...|-|+-- .|. .--.|.++|+-|..+... +|||||+|++.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP--lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP--LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc--cchHHHHHHHHHHHHHhhcccceEEEehhhHHHH
Confidence 46678999999999999999999999999999888888642 232 245789999999877654 68899999864
No 222
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.83 E-value=4.4e-07 Score=90.23 Aligned_cols=60 Identities=37% Similarity=0.645 Sum_probs=45.8
Q ss_pred ccccchHHHHHHH---HHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhh
Q 007764 208 DDVGGVRKQMAQI---RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI 278 (590)
Q Consensus 208 ~~i~G~~~~~~~l---~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~--~~~~~v~~~~l 278 (590)
+.++|+.++.+.. .+++.. |--.+++||+.||||||||.||-++|+++| .||..++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~-----------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQ-----------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHh-----------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 4588888876663 444433 234689999999999999999999999997 46777777654
No 223
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.8e-09 Score=112.95 Aligned_cols=97 Identities=28% Similarity=0.503 Sum_probs=74.5
Q ss_pred cccchhhhcccceeecccCChhhhhhc-CCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch---------hh
Q 007764 484 GGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL---------LT 553 (590)
Q Consensus 484 ggl~~vk~~L~~~v~~~~~~~~~~~~~-~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el---------~~ 553 (590)
-|++++|+.+.+.+.-. ++ |-..++-++|+||||+|||++||.+|..++..|+++.---+ -.
T Consensus 414 Ygm~dVKeRILEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred cchHHHHHHHHHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccce
Confidence 47888998888775421 11 22345569999999999999999999999999988753222 12
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
.|||.-...+-+..++..-..| +++|||||++...
T Consensus 486 TYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g 520 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG 520 (906)
T ss_pred eeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC
Confidence 4888887788888888887777 7899999999753
No 224
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.82 E-value=3.8e-07 Score=99.11 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=52.9
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhh------cc----------------------ch
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW------FG----------------------ES 559 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~------vG----------------------es 559 (590)
|+.++..+|+.||||+|||+|+-.++... +-+.+.+..-|-...+ +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 78888889999999999999998888755 3344444443331111 11 01
Q ss_pred HHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 560 EANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 560 e~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
+..+..+.+......|.+++||-+-.+
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 456677777888888899999988765
No 225
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=4.8e-09 Score=112.53 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=67.8
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++++++.|...+... +.+..+||+|||||||||+|+++|..+..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 346889999999988877764421 24456899999999999999999998754
Q ss_pred ---------cEEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 542 ---------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
.++.++++.. . .-..+|++.+.++.. ...|+|+||+|.+..
T Consensus 78 ~~i~~g~~~dv~el~aa~~----~--gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN----R--GIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK 131 (472)
T ss_pred HHHhcCCCCccEEEeCccc----C--CHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH
Confidence 4566655421 1 124577777776543 346999999998854
No 226
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.82 E-value=2.1e-09 Score=108.32 Aligned_cols=78 Identities=23% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh--hccchHHH----------HHHHHHHHhhCCCeEE
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN----------VREIFDKARQSAPCVL 578 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~--~vGese~~----------ir~~f~~Ar~~~p~vl 578 (590)
++..+++++|.||||||||++|+.+|..++.+++.|++.+.++. ++|..... ....+-.|... ++++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~-g~il 138 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQH-NVAL 138 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhC-CeEE
Confidence 34456789999999999999999999999999999998877665 56653211 12344556544 4789
Q ss_pred EEccccccccc
Q 007764 579 FFDELDSIATQ 589 (590)
Q Consensus 579 f~DEid~l~~~ 589 (590)
||||+|.+.|+
T Consensus 139 llDEin~a~p~ 149 (327)
T TIGR01650 139 CFDEYDAGRPD 149 (327)
T ss_pred EechhhccCHH
Confidence 99999998775
No 227
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.82 E-value=2.6e-08 Score=106.22 Aligned_cols=183 Identities=23% Similarity=0.318 Sum_probs=122.0
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE--E------EE
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--F------CI 273 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~--~------~v 273 (590)
..+-.|+|+.|++...+.|+..+..-. -....|+.||.|+||||+||.+|+.+++.- . ..
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~r------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGR------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCc------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 346689999999999999999887632 134789999999999999999999986541 0 01
Q ss_pred echhhhh----------hccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcc
Q 007764 274 NGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL 339 (590)
Q Consensus 274 ~~~~l~~----------~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~ 339 (590)
.|.++.. ......-+.+|.+.+.+. ....-|.+|||+|.+. ....+.|+..+..
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNALLKTLEE- 145 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNALLKTLEE- 145 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHHhccccc-
Confidence 1111111 111123345666666553 3456799999999773 2344666666654
Q ss_pred ccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 340 KSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 340 ~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
....|.+|.+|..++.+++.+++ |+ ..+.+...+.++....|...+..-.+. ++..+..+++..+|-..
T Consensus 146 -PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 146 -PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred -CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChh
Confidence 33467888888888999988876 55 455677777777777777666554443 33446677777776443
No 228
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.82 E-value=5.9e-09 Score=98.03 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=36.1
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
|+||.|++..++.+.-...- +.++|++||||||||++|+.+...+.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 78899999999988655532 45999999999999999999998764
No 229
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=6.3e-08 Score=106.66 Aligned_cols=199 Identities=13% Similarity=0.163 Sum_probs=112.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE-Eech---
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-INGP--- 276 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~-v~~~--- 276 (590)
+..+.+++++.|.++.++.++.++.-.. ++..+++.++|+|||||||||+++.+|++++..+.. .+..
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 4467789999999999999998876422 223556779999999999999999999998755422 1111
Q ss_pred hhh----------hhc--cchhHHHHHHHHHHHHh----------cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHH
Q 007764 277 EIM----------SKL--AGESESNLRKAFEEAEK----------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 334 (590)
Q Consensus 277 ~l~----------~~~--~g~~~~~~~~~f~~a~~----------~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~ 334 (590)
... ..+ .....+..+.++..+.. ....||||||++.+.... .+.+..++.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lLr 220 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEILR 220 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHHH
Confidence 000 000 01122334444444432 245699999999765321 112333333
Q ss_pred hhhccccCCeEEEEeecC-CCC--------C------CchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCC--C----
Q 007764 335 LMDGLKSRAHVIVIGATN-RPN--------S------IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM--K---- 393 (590)
Q Consensus 335 ~ld~~~~~~~v~vI~~tn-~~~--------~------ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~--~---- 393 (590)
+. ......+.+|++++ .+. . +.++++..-|. ..|.|.+.+.......|...+... .
T Consensus 221 ~~--~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 221 WK--YVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred HH--hhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 11 11122333443333 121 0 22566532244 578999999988655555433221 1
Q ss_pred --CCCccCHHHHHHhcCCCCHHHHHHH
Q 007764 394 --LSDDVDLERIAKDTHGYVGADLAAL 418 (590)
Q Consensus 394 --~~~~~~l~~la~~t~g~~~~dl~~l 418 (590)
......+..++...+|-....|..|
T Consensus 298 ~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred cccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 1122356777777777665555444
No 230
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.81 E-value=1.5e-07 Score=107.61 Aligned_cols=132 Identities=23% Similarity=0.290 Sum_probs=85.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh------hhhc-c----chhHHHHHHHHHHHHhcCCeEEEEcc
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI------MSKL-A----GESESNLRKAFEEAEKNAPSIIFIDE 309 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l------~~~~-~----g~~~~~~~~~f~~a~~~~p~iL~iDE 309 (590)
-++++||-|.||+|||+|+.++|+..|...+.||.++- .+.+ . |+.... ..-|-.|.+. ...+++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~-dapfL~amr~-G~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWM-DAPFLHAMRD-GGWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEec-ccHHHHHhhc-CCEEEeeh
Confidence 36799999999999999999999999999999997642 2211 1 111111 1123333332 35899999
Q ss_pred cccccCCCCCCchhHHHHHHHHHHHhhhcc------------ccCCeEEEEeecCCCC------CCchhhhccCCCceEE
Q 007764 310 IDSIAPKREKTHGEVERRIVSQLLTLMDGL------------KSRAHVIVIGATNRPN------SIDPALRRFGRFDREI 371 (590)
Q Consensus 310 id~l~~~~~~~~~~~~~~v~~~Ll~~ld~~------------~~~~~v~vI~~tn~~~------~ld~al~r~gRf~~~i 371 (590)
+.... +.+++-|...+|.- ....+..|.||-|+-+ .++..+.. || .++
T Consensus 1620 iNLaS-----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV 1685 (4600)
T COG5271 1620 INLAS-----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVV 1685 (4600)
T ss_pred hhhhH-----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heE
Confidence 87431 34555565555532 2345778888888764 46777766 88 556
Q ss_pred EecCCCHHHHHHHHHHH
Q 007764 372 DIGVPDEVGRLEVLRIH 388 (590)
Q Consensus 372 ~i~~P~~~~r~~Il~~~ 388 (590)
.+...+.+....|....
T Consensus 1686 ~~d~lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1686 KMDGLTTDDITHIANKM 1702 (4600)
T ss_pred EecccccchHHHHHHhh
Confidence 66666666665555543
No 231
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.80 E-value=7.5e-09 Score=103.36 Aligned_cols=73 Identities=25% Similarity=0.403 Sum_probs=52.3
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEEecc------chhhhhccchHHHH---------------------HHHH
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANV---------------------REIF 567 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~------el~~~~vGese~~i---------------------r~~f 567 (590)
+..++|+||||||||++|+++|..++.+|+.+.+. ++++.|.|...+.+ +-++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 46799999999999999999999999999999764 44555544332211 1233
Q ss_pred HHHhhCCCeEEEEccccccccc
Q 007764 568 DKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 568 ~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
..++.. .+|++|||+.+.++
T Consensus 101 ~A~~~g--~~lllDEi~r~~~~ 120 (262)
T TIGR02640 101 LAVREG--FTLVYDEFTRSKPE 120 (262)
T ss_pred HHHHcC--CEEEEcchhhCCHH
Confidence 333333 59999999998764
No 232
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.80 E-value=4.1e-08 Score=108.20 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.++..+.|.||+|||||||+++|++..
T Consensus 21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456889999999999999999999999974
No 233
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.79 E-value=2e-08 Score=110.28 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.++..+.|.||+|+|||||+++|++.+
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999999875
No 234
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.79 E-value=2.7e-08 Score=109.42 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.+++.+.|.||+|+|||||+++|++..
T Consensus 26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 456789999999999999999999998875
No 235
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.79 E-value=6.3e-08 Score=90.69 Aligned_cols=185 Identities=20% Similarity=0.254 Sum_probs=103.5
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCe----EEEEech
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAF----FFCINGP 276 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-~~~----~~~v~~~ 276 (590)
..+..+.||+|.++.++.+.-+... ..-.+++|.|||||||||-+.++|+++ |.. ++++|++
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 3566788999999999998665543 123489999999999999999999986 322 4667766
Q ss_pred hhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 277 EIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
+-.+ ......+++ .|.+-+- +.-.|+++||.|++-.. ....|...|+-+....+ ++.+||
T Consensus 88 deRG--IDvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttR--FalaCN 151 (333)
T KOG0991|consen 88 DERG--IDVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTR--FALACN 151 (333)
T ss_pred cccc--cHHHHHHHH-HHHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccch--hhhhhc
Confidence 5332 111222233 3333222 22259999999987421 12334445554444333 444788
Q ss_pred CCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHH
Q 007764 353 RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAAL 418 (590)
Q Consensus 353 ~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l 418 (590)
..+.|-+.+.+ |+ ..+.+...+..+-+.-|....+.-.+. .+..++.+..-.+|-....+..+
T Consensus 152 ~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 152 QSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred chhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHH
Confidence 77766555544 33 122223333444333333332222222 22346666666666555544444
No 236
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.78 E-value=6.7e-08 Score=102.02 Aligned_cols=133 Identities=21% Similarity=0.266 Sum_probs=76.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEec-----hhhhhhc-cchhHHHHHHHHHHHHhc---CCeEEEEc
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFCING-----PEIMSKL-AGESESNLRKAFEEAEKN---APSIIFID 308 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~--~~~~v~~-----~~l~~~~-~g~~~~~~~~~f~~a~~~---~p~iL~iD 308 (590)
..+.++||.||||||||++|++++...+. +|..+.+ .++.+.. .... .-...|.....+ ...++|+|
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~--~~~g~f~r~~~G~L~~A~lLfLD 114 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQAL--KDEGRYQRLTSGYLPEAEIVFLD 114 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhh--hhcCchhhhcCCccccccEEeec
Confidence 45789999999999999999999997643 3332222 2332211 0000 001112211111 23499999
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHHhhhccc--------cCCeEEEEeecCCCCC---CchhhhccCCCceEEEecCCC
Q 007764 309 EIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVIGATNRPNS---IDPALRRFGRFDREIDIGVPD 377 (590)
Q Consensus 309 Eid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~v~vI~~tn~~~~---ld~al~r~gRf~~~i~i~~P~ 377 (590)
||..+. ....+.|+..|..-. .-...++++|||+... ..+++.. ||...+.+++|+
T Consensus 115 EI~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~ 181 (498)
T PRK13531 115 EIWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQ 181 (498)
T ss_pred ccccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCC
Confidence 997543 345567777773321 1112345556674321 2236665 898899999997
Q ss_pred H-HHHHHHHHH
Q 007764 378 E-VGRLEVLRI 387 (590)
Q Consensus 378 ~-~~r~~Il~~ 387 (590)
. ++-.++|..
T Consensus 182 ~~~~e~~lL~~ 192 (498)
T PRK13531 182 DKANFRSMLTS 192 (498)
T ss_pred chHHHHHHHHc
Confidence 4 555777764
No 237
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=6.2e-09 Score=110.09 Aligned_cols=93 Identities=22% Similarity=0.373 Sum_probs=64.7
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc---------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~--------------- 542 (590)
-+|+++.|++++.+.|...+.. + +.+..+||+||+||||||+|+++|..+.+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 4678899999988887766542 1 223458999999999999999999988652
Q ss_pred ---------EEEEeccchhhhhccchHHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 543 ---------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 543 ---------~i~v~~~el~~~~vGese~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
|+.++++.- . .-..+|++.+.+. .+...|+||||+|.|.+
T Consensus 83 ~i~~g~~~dviEIdaas~----~--gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 83 EITKGISSDVLEIDAASN----R--GIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD 135 (484)
T ss_pred HHHccCCccceeechhhc----c--cHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH
Confidence 344433211 1 1235666666554 34457999999999865
No 238
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.77 E-value=1.8e-08 Score=110.23 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3456889999999999999999999999875
No 239
>PRK04195 replication factor C large subunit; Provisional
Probab=98.77 E-value=9e-09 Score=111.93 Aligned_cols=96 Identities=30% Similarity=0.476 Sum_probs=70.3
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vG 557 (590)
.+++++.|.+.+++.|...+..-. .-.++.++||+||||||||++|+++|.+++.+++.++.++..+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~---------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~---- 77 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL---------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT---- 77 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc----
Confidence 357788899888888877653211 1124678999999999999999999999999999999887532
Q ss_pred chHHHHHHHHHHHhh------CCCeEEEEcccccccc
Q 007764 558 ESEANVREIFDKARQ------SAPCVLFFDELDSIAT 588 (590)
Q Consensus 558 ese~~ir~~f~~Ar~------~~p~vlf~DEid~l~~ 588 (590)
...++.+...+.. ..+.||||||+|.+..
T Consensus 78 --~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 78 --ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred --HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 2234444333322 2567999999999864
No 240
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.77 E-value=3.3e-08 Score=108.42 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=27.2
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.+++.+.|+||+|+|||||++++++.+
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999999875
No 241
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.77 E-value=5.7e-08 Score=100.39 Aligned_cols=148 Identities=24% Similarity=0.323 Sum_probs=95.7
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------------------
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--------------------- 267 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~--------------------- 267 (590)
++.|.+.....+........ .-+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 35566666666655554211 1122599999999999999999999986
Q ss_pred ---CeEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc
Q 007764 268 ---AFFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK 340 (590)
Q Consensus 268 ---~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 340 (590)
..++.++.++..... ...+.++.+.+.... ...-+++|||+|.+-. ...+.++..+....
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~ 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPP 137 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCC
Confidence 456777776654321 133445554443322 3356999999998753 23455666666543
Q ss_pred cCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHH
Q 007764 341 SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 385 (590)
Q Consensus 341 ~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il 385 (590)
.+..+|.+||.++.+-+.+++ |. ..+.|.+|+........
T Consensus 138 --~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 138 --KNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred --CCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHh
Confidence 356667788888888888887 66 66777775555544333
No 242
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.76 E-value=4.5e-08 Score=110.24 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.++..+.|+||+|||||||+++|++..
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3557889999999999999999999999875
No 243
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.76 E-value=2e-08 Score=90.24 Aligned_cols=73 Identities=47% Similarity=0.744 Sum_probs=55.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHH---HHHHHHHHhhCCCeEEEEcccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~---ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
...+++++||||||||++++.++... +.+++.+...+....+....... ....+..+....+.+|++||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 45679999999999999999999998 88899998887765443322111 123344555667899999999976
No 244
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7.9e-08 Score=106.45 Aligned_cols=159 Identities=24% Similarity=0.351 Sum_probs=109.1
Q ss_pred ccccchHHHHHHHHHHHHcc---cCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhh
Q 007764 208 DDVGGVRKQMAQIRELVELP---LRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSK 281 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~---~~~~~v~~~~l~~~ 281 (590)
.-+.|+++.+..+.+.+... +..| -.|-..+||.||+|+|||-||++||..+. ..++.++.++++.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp-------~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDP-------NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 34899999999998777642 1111 12334688999999999999999999986 67899999998753
Q ss_pred ------------ccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc-------
Q 007764 282 ------------LAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS------- 341 (590)
Q Consensus 282 ------------~~g~~~~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~------- 341 (590)
|+|.-+ +..+.++-+ ...+|+++|||+.- +..+.+-|++.||.-.-
T Consensus 564 HsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred HHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCE
Confidence 233222 233444444 44589999999854 24677888888874321
Q ss_pred --CCeEEEEeecCCCC----------------------------CCchhhhccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 342 --RAHVIVIGATNRPN----------------------------SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 342 --~~~v~vI~~tn~~~----------------------------~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
-.+.++|.|+|--. ...|+++. |++..|.|.+.+.+...+|+...+
T Consensus 630 VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 630 VDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred EecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 12577888877431 11233443 888888888888888888877554
No 245
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=2.5e-08 Score=109.42 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.8
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|+|||||++.|++.+.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567899999999999999999999998764
No 246
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=8.2e-09 Score=111.86 Aligned_cols=94 Identities=22% Similarity=0.374 Sum_probs=67.3
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++++++.|.+.+... +.+..+||+||+||||||+|+.+|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 346789999999999888876521 23345799999999999999999998865
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHhh----CCCeEEEEcccccccc
Q 007764 542 --------------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 --------------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~ 588 (590)
+++.+++..- .+-..||++.+.+.. +...|+||||+|.|..
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN 138 (700)
T ss_pred ccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH
Confidence 3444443321 112456777776643 3467999999999864
No 247
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.74 E-value=6.7e-09 Score=101.23 Aligned_cols=96 Identities=25% Similarity=0.369 Sum_probs=62.1
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc------EEEEeccc
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGPE 550 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~------~i~v~~~e 550 (590)
.-+++++.|++.+.+.|...+.. +-..++|||||||||||+.|+++|.++..+ ..+.+.++
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 34678889999999988887542 234579999999999999999999998652 22233333
Q ss_pred hhhhhccchHHHHHHHHHHHhhC----------CCeEEEEcccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQS----------APCVLFFDELDSIAT 588 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~----------~p~vlf~DEid~l~~ 588 (590)
--+.-|+. ++ -+-|.+.+.. ++-|++|||.|++..
T Consensus 99 erGisvvr-~K--ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts 143 (346)
T KOG0989|consen 99 ERGISVVR-EK--IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS 143 (346)
T ss_pred cccccchh-hh--hcCHHHHhhccccccCCCCCcceEEEEechhhhhH
Confidence 22211111 11 1233333322 237999999999853
No 248
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.2e-07 Score=93.58 Aligned_cols=83 Identities=29% Similarity=0.535 Sum_probs=60.9
Q ss_pred CeEEEEcccccccCCCCCCchhHHH-HHHHHHHHhhhccc--------cCCeEEEEeec----CCCCCCchhhhccCCCc
Q 007764 302 PSIIFIDEIDSIAPKREKTHGEVER-RIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFD 368 (590)
Q Consensus 302 p~iL~iDEid~l~~~~~~~~~~~~~-~v~~~Ll~~ld~~~--------~~~~v~vI~~t----n~~~~ld~al~r~gRf~ 368 (590)
-.|+||||||.++.+.+.+.+++.+ -+.+.|+-++.|-. ....+++|++- ..|.+|=|.|. |||+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 3699999999999887644334433 45566777776532 23467888753 46777888887 5999
Q ss_pred eEEEecCCCHHHHHHHHH
Q 007764 369 REIDIGVPDEVGRLEVLR 386 (590)
Q Consensus 369 ~~i~i~~P~~~~r~~Il~ 386 (590)
-.+++...+.+.-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999998888875
No 249
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.2e-08 Score=111.01 Aligned_cols=93 Identities=24% Similarity=0.387 Sum_probs=68.5
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---------------- 541 (590)
.+|+++.|++.+++.|...+.. -+.+..+||+||+||||||+|+++|..+.+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 4788999999999988877541 133456899999999999999999998754
Q ss_pred --------cEEEEeccchhhhhccchHHHHHHHHHHHhh----CCCeEEEEcccccccc
Q 007764 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 --------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~ 588 (590)
+++.+++++-. .-..+|++.+.+.. +...|+||||+|.|.+
T Consensus 80 ~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST 132 (702)
T ss_pred HHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH
Confidence 35555554321 23467777776643 3457999999999864
No 250
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.73 E-value=3.9e-07 Score=91.53 Aligned_cols=174 Identities=17% Similarity=0.289 Sum_probs=98.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC-eEE--E-Eec----hhhhhh---ccc-----hh-HH---HHHHHH-HHHHhcC
Q 007764 243 KGILLYGPPGSGKTLIARAVANETGA-FFF--C-ING----PEIMSK---LAG-----ES-ES---NLRKAF-EEAEKNA 301 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~~~-~~~--~-v~~----~~l~~~---~~g-----~~-~~---~~~~~f-~~a~~~~ 301 (590)
..++|+||+|+||||+++.+++.+.. .+. . ++. .++... ..| .. .. .+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999999998752 221 1 111 111110 111 10 11 111111 2233566
Q ss_pred CeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-cCCeE--EEEeecCCCCCC-c---hhhhccCCCceEEEec
Q 007764 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHV--IVIGATNRPNSI-D---PALRRFGRFDREIDIG 374 (590)
Q Consensus 302 p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v--~vI~~tn~~~~l-d---~al~r~gRf~~~i~i~ 374 (590)
+.++++||++.+.+. ....+..+.+... ....+ ++++.+.-.+.+ + ..+.+ |+...+.++
T Consensus 124 ~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 789999999976321 1222222222111 12222 333322211111 1 22443 777888999
Q ss_pred CCCHHHHHHHHHHHhcCCC-----CCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 007764 375 VPDEVGRLEVLRIHTKNMK-----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (590)
Q Consensus 375 ~P~~~~r~~Il~~~~~~~~-----~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (590)
..+.++..+++........ .-.+..++.+.+.+.|+... +..+|..+...+..+.
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~ 250 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEE 250 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcC
Confidence 9999998888876654332 12335678899999999765 8888888877766554
No 251
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.72 E-value=7.4e-08 Score=106.37 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=27.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|+|||||++.|++.+.
T Consensus 30 l~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 30 LQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4567899999999999999999999998864
No 252
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.72 E-value=4.8e-08 Score=106.91 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|.||+|+|||||++.+++..
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456789999999999999999999999875
No 253
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.3e-07 Score=104.59 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.++..+.|+||+|+|||||++.|++.+
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567889999999999999999999999875
No 254
>PLN03025 replication factor C subunit; Provisional
Probab=98.72 E-value=1.6e-08 Score=104.21 Aligned_cols=92 Identities=25% Similarity=0.380 Sum_probs=61.5
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC-----CcEEEEeccchh
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELL 552 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~-----~~~i~v~~~el~ 552 (590)
.+++++.|.+++.+.|+..+.. + ...+++|+||||||||++|+++|.++. .+++.++.++..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~ 76 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD-----------G--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR 76 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc
Confidence 3567788888887777665331 1 123699999999999999999999872 346777776543
Q ss_pred hhhccchHHHHHHHHHH---Hh----hCCCeEEEEcccccccc
Q 007764 553 TMWFGESEANVREIFDK---AR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 553 ~~~vGese~~ir~~f~~---Ar----~~~p~vlf~DEid~l~~ 588 (590)
+. ..+|+..+. .. ...+.|++|||+|.+.+
T Consensus 77 ~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 77 GI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS 113 (319)
T ss_pred cH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH
Confidence 21 123333222 11 13467999999999864
No 255
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.71 E-value=2.2e-08 Score=99.32 Aligned_cols=66 Identities=32% Similarity=0.700 Sum_probs=52.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCc---EEEEeccchhhhhccchHHHHHHHHHHHhh-----CCCeEEEEccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDELDSIA 587 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~---~i~v~~~el~~~~vGese~~ir~~f~~Ar~-----~~p~vlf~DEid~l~ 587 (590)
.+++|.||||||||+||+.||..+.-. ||.+.... ..-+.+|++|+.|.. ....|||+|||..+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 369999999999999999999988665 77776432 235789999999974 345899999998764
Q ss_pred c
Q 007764 588 T 588 (590)
Q Consensus 588 ~ 588 (590)
.
T Consensus 236 k 236 (554)
T KOG2028|consen 236 K 236 (554)
T ss_pred h
Confidence 3
No 256
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.71 E-value=3.3e-08 Score=108.44 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.++..+.|.||+|+|||||++.|++..
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999999999864
No 257
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=1.3e-08 Score=111.62 Aligned_cols=93 Identities=19% Similarity=0.339 Sum_probs=66.8
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---------------- 541 (590)
-+|+++.|++++++.|+..+.. -+....+||+||+||||||+|+++|+.+.+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 4688999999999988877542 123445799999999999999999998854
Q ss_pred --------cEEEEeccchhhhhccchHHHHHHHHHHHhh----CCCeEEEEcccccccc
Q 007764 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 --------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~ 588 (590)
+++.++..+- .+-..+|++.+.+.. ....|+||||+|.|.+
T Consensus 81 ~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN 133 (830)
T ss_pred HHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH
Confidence 2444443321 112457777777653 3457999999999864
No 258
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2.6e-07 Score=94.29 Aligned_cols=180 Identities=15% Similarity=0.191 Sum_probs=117.8
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------------
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 269 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~---------------- 269 (590)
.|++|.|++..++.+++.+... .-+..+||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4788999999999999888652 124589999999999999999999885221
Q ss_pred --EEEEechhhh-hh-----c---cc--------hhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHH
Q 007764 270 --FFCINGPEIM-SK-----L---AG--------ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVER 326 (590)
Q Consensus 270 --~~~v~~~~l~-~~-----~---~g--------~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~ 326 (590)
++.+...... ++ + .| -.-+.++.+.+.+. .....|++||++|.+- .
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------E 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------H
Confidence 1222211000 00 0 00 01124455544433 2345799999998773 2
Q ss_pred HHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHh
Q 007764 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKD 406 (590)
Q Consensus 327 ~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~ 406 (590)
...+.|+..++... . .++|..|+.++.+-+.+++ |. ..+.++.|+.++..++|......-. .+.+...++..
T Consensus 139 ~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 34467888887754 3 3455567788899999987 76 7899999999999888886532111 11224677777
Q ss_pred cCCCCHHHHH
Q 007764 407 THGYVGADLA 416 (590)
Q Consensus 407 t~g~~~~dl~ 416 (590)
+.|-.+..+.
T Consensus 211 a~Gs~~~al~ 220 (314)
T PRK07399 211 AQGSPGAAIA 220 (314)
T ss_pred cCCCHHHHHH
Confidence 7777665544
No 259
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.71 E-value=3e-08 Score=91.78 Aligned_cols=130 Identities=27% Similarity=0.495 Sum_probs=77.7
Q ss_pred ccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-----
Q 007764 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----- 281 (590)
Q Consensus 210 i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~----- 281 (590)
|+|-+..++++++.+.... ..+.+|||+|++||||+.+|++|-+.. +.+|+.++|..+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 4566667777766665432 234799999999999999999998764 468999999765322
Q ss_pred ccchhH-------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc---------cCCeE
Q 007764 282 LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHV 345 (590)
Q Consensus 282 ~~g~~~-------~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v 345 (590)
..|... ......|+.|..+ .||||||+.|.+ .+...|+..++.-. ...++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccccccc
Confidence 122110 0112455555444 999999998853 23455666665211 12378
Q ss_pred EEEeecCCCCCCchhhhccCCC
Q 007764 346 IVIGATNRPNSIDPALRRFGRF 367 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf 367 (590)
.+|++|+.+ +...+. .|+|
T Consensus 136 RiI~st~~~--l~~~v~-~g~f 154 (168)
T PF00158_consen 136 RIIASTSKD--LEELVE-QGRF 154 (168)
T ss_dssp EEEEEESS---HHHHHH-TTSS
T ss_pred eEEeecCcC--HHHHHH-cCCC
Confidence 899999864 444443 3566
No 260
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=1.3e-08 Score=110.36 Aligned_cols=93 Identities=20% Similarity=0.322 Sum_probs=67.9
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc---------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~--------------- 542 (590)
-+|+++.|++++.+.|...+.. -+.+..+||+||+||||||+|+++|..+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 4688999999999988877642 1233458999999999999999999988542
Q ss_pred ---------EEEEeccchhhhhccchHHHHHHHHHHHhh----CCCeEEEEcccccccc
Q 007764 543 ---------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 543 ---------~i~v~~~el~~~~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~ 588 (590)
++.++++.- ..-..+|++.+.+.. +...|+||||+|.|.+
T Consensus 81 ~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG 133 (509)
T ss_pred HHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH
Confidence 555654421 123357777776543 3456999999999875
No 261
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.70 E-value=2.3e-09 Score=96.36 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=45.9
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch------hhhhcc---chHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL------LTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el------~~~~vG---ese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
+|+|+||||||||+||+.+|..++.+++.+.++.. +..|.- ..+-.-..+.+.++ .++++||||++.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 58999999999999999999999999999888653 222221 11000011111111 45899999999877
Q ss_pred cc
Q 007764 588 TQ 589 (590)
Q Consensus 588 ~~ 589 (590)
+.
T Consensus 79 ~~ 80 (139)
T PF07728_consen 79 PE 80 (139)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 262
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=3.1e-07 Score=94.31 Aligned_cols=150 Identities=18% Similarity=0.279 Sum_probs=99.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a 297 (590)
+..+||+||+|+|||++|+++|+.+... ++.+...+- ++ .-.-+.+|.+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHHH
Confidence 5579999999999999999999887431 222221100 00 01224555555444
Q ss_pred H----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEe
Q 007764 298 E----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (590)
Q Consensus 298 ~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i 373 (590)
. .....|++||++|.+- ....+.|+..+++.. .++++|.+|+.++.+.|.+++ |+ ..+.+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN-----------RNAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCC-----------HHHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eeeeC
Confidence 3 3445689999999874 234577888887743 467777888889999999987 77 55899
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHH
Q 007764 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 374 ~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~ 413 (590)
++|+.++-.+.|...... ..+.....++..++|-.+.
T Consensus 163 ~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 163 PLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPLR 199 (328)
T ss_pred CCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHHH
Confidence 999999888888754311 1223344556666665543
No 263
>PLN03073 ABC transporter F family; Provisional
Probab=98.69 E-value=4e-08 Score=111.06 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=26.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANE 265 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~ 265 (590)
++.+.++..+.|+||+|+|||||++.|++.
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 356788999999999999999999999974
No 264
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.69 E-value=8.2e-08 Score=107.45 Aligned_cols=156 Identities=24% Similarity=0.353 Sum_probs=96.2
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC------------------
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------------------ 267 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~------------------ 267 (590)
.|.+|.|++..+..+.-....| ...+|||.|++|||||++|++|++.+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3678999999887775444332 124799999999999999999999873
Q ss_pred -----------------CeEEEEechhhhhhccchh--HHHHH---HHHH--HHHhcCCeEEEEcccccccCCCCCCchh
Q 007764 268 -----------------AFFFCINGPEIMSKLAGES--ESNLR---KAFE--EAEKNAPSIIFIDEIDSIAPKREKTHGE 323 (590)
Q Consensus 268 -----------------~~~~~v~~~~l~~~~~g~~--~~~~~---~~f~--~a~~~~p~iL~iDEid~l~~~~~~~~~~ 323 (590)
.+|+.+.+........|.. +..+. ..++ ........+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 3444444332222222221 11110 0000 00011235999999998742
Q ss_pred HHHHHHHHHHHhhhccc-----------cCCeEEEEeecCCCC-CCchhhhccCCCceEEEecCCC-HHHHHHHHHH
Q 007764 324 VERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLEVLRI 387 (590)
Q Consensus 324 ~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P~-~~~r~~Il~~ 387 (590)
.+.+.|+..|+.-. ...++.+|+++|+.+ .+.++|.. ||+..+.++.+. .+++.+++..
T Consensus 141 ---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 ---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 34566777665321 123588999988643 57788887 999888888775 4666777653
No 265
>PRK04132 replication factor C small subunit; Provisional
Probab=98.68 E-value=3e-07 Score=103.96 Aligned_cols=156 Identities=21% Similarity=0.218 Sum_probs=112.5
Q ss_pred CCceEEEEC--CCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhc------CCeEEEE
Q 007764 241 PPKGILLYG--PPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN------APSIIFI 307 (590)
Q Consensus 241 ~~~~vLL~G--ppGtGKTtla~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~------~p~iL~i 307 (590)
|+-+-+..| |++.||||+|+++|+++ +..++.+|+++..+ -..++.++..+... ...|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444566779 99999999999999997 45789999987432 12455555544322 2359999
Q ss_pred cccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHH
Q 007764 308 DEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 387 (590)
Q Consensus 308 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~ 387 (590)
||+|.+-. ...+.|+..|+... .++.+|.+||++..+.+++++ |+ ..+.|+.|+.++....|..
T Consensus 637 DEaD~Lt~-----------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADALTQ-----------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccCCH-----------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 99998842 23466777777643 367788889999999999987 76 7889999998888888876
Q ss_pred HhcCCCCC-CccCHHHHHHhcCCCCHHHHHHH
Q 007764 388 HTKNMKLS-DDVDLERIAKDTHGYVGADLAAL 418 (590)
Q Consensus 388 ~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l 418 (590)
.+....+. ++..+..++..+.|-....+..+
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 65433322 34468888888888776655444
No 266
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.68 E-value=9e-09 Score=88.76 Aligned_cols=104 Identities=30% Similarity=0.414 Sum_probs=55.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEech-hhh-----hhccchhHH-----HHHHHHHHHHhcCCeEEEEccccc
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGP-EIM-----SKLAGESES-----NLRKAFEEAEKNAPSIIFIDEIDS 312 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~-~l~-----~~~~g~~~~-----~~~~~f~~a~~~~p~iL~iDEid~ 312 (590)
++||.|+||+|||++++++|+.++..|..|.+. +++ +..+-.... .-.-+| ..|+++|||+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999888763 332 211110000 001111 24999999987
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhhhcccc---------CCeEEEEeecCCCC-----CCchhhhccCCC
Q 007764 313 IAPKREKTHGEVERRIVSQLLTLMDGLKS---------RAHVIVIGATNRPN-----SIDPALRRFGRF 367 (590)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~---------~~~v~vI~~tn~~~-----~ld~al~r~gRf 367 (590)
..+ +..+.|++.|.+..- ...+.||||.|+.+ .+++++.. ||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 643 345667777653221 23578899999865 45666665 66
No 267
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.9e-08 Score=103.95 Aligned_cols=93 Identities=23% Similarity=0.367 Sum_probs=65.4
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---------------- 541 (590)
.+|+++.|++++.+.|...+.. + +.+..++|+||+||||||+|+++|..+.+
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 5789999999999988776532 1 23345799999999999999999998753
Q ss_pred --------cEEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 542 --------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
+++.++++.- ..-..++++.+.+... ...|+||||+|.+..
T Consensus 81 ~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~ 133 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR 133 (363)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH
Confidence 2333332210 1234577887776543 245999999999864
No 268
>PRK08116 hypothetical protein; Validated
Probab=98.67 E-value=1.2e-07 Score=94.84 Aligned_cols=101 Identities=20% Similarity=0.384 Sum_probs=63.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccch----hHHHHHHHHHHHHhcCCeEEEEccccccc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~----~~~~~~~~f~~a~~~~p~iL~iDEid~l~ 314 (590)
+.+++|+|++|||||+||.++++.+ +.+++.++.++++...... .......+++... ...+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4679999999999999999999986 6778889988876644221 1111223333332 34599999986421
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
. ......+|..+++........ +|.|||.+
T Consensus 192 ~---------t~~~~~~l~~iin~r~~~~~~-~IiTsN~~ 221 (268)
T PRK08116 192 D---------TEWAREKVYNIIDSRYRKGLP-TIVTTNLS 221 (268)
T ss_pred C---------CHHHHHHHHHHHHHHHHCCCC-EEEECCCC
Confidence 1 123446677777765433333 44466643
No 269
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=2.6e-08 Score=111.49 Aligned_cols=94 Identities=23% Similarity=0.367 Sum_probs=64.2
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc--------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~-------------- 542 (590)
..+|+++.|++.+++.|+..+... +.+..+||+|||||||||+|+++|..+.+.
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 357889999999998887765421 223346999999999999999999988653
Q ss_pred ----------EEEEeccchhhhhccchHHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 543 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 543 ----------~i~v~~~el~~~~vGese~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
++.+++.+ .. .-..+|++.+.+. .+...|+||||++.|.+
T Consensus 80 ~~i~~g~~~DviEidAas----~~--kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~ 133 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS----RT--KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR 133 (944)
T ss_pred HHHhcCCCceEEEecccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH
Confidence 12222211 01 1234666665554 34457999999999865
No 270
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.65 E-value=2e-07 Score=103.49 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.++..+.|+||+|+|||||+++|++.+
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457889999999999999999999999875
No 271
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=4e-08 Score=105.10 Aligned_cols=93 Identities=19% Similarity=0.318 Sum_probs=69.2
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC-----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------------- 540 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~----------------- 540 (590)
.+|+++.|++.+.+.|+..+.. + +.+..+||+||+|+||||+|+++|..+.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 4788999999999988766442 1 3456799999999999999999998642
Q ss_pred -------CcEEEEeccchhhhhccchHHHHHHHHHHHhhCC----CeEEEEcccccccc
Q 007764 541 -------ANFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIAT 588 (590)
Q Consensus 541 -------~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~----p~vlf~DEid~l~~ 588 (590)
.+++.+++++-. +-..+|++.+.+...+ ..|++|||+|.|..
T Consensus 78 ~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~ 130 (491)
T PRK14964 78 SIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN 130 (491)
T ss_pred HHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH
Confidence 345666665321 2356888888876443 46999999998864
No 272
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.1e-07 Score=93.20 Aligned_cols=98 Identities=35% Similarity=0.514 Sum_probs=71.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccchhHHH-HHHHHHHHH----hcCCeEEEEcccccccC
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGESESN-LRKAFEEAE----KNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~-~~~g~~~~~-~~~~f~~a~----~~~p~iL~iDEid~l~~ 315 (590)
..+|||.||+|||||.||+.||+.++.||..-++..+.. .|+|+--++ +..+++.+. +....|++|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 458999999999999999999999999998888877764 577764444 455555432 23456999999999987
Q ss_pred CCCCCch---hHHHHHHHHHHHhhhcc
Q 007764 316 KREKTHG---EVERRIVSQLLTLMDGL 339 (590)
Q Consensus 316 ~~~~~~~---~~~~~v~~~Ll~~ld~~ 339 (590)
+.+.++- -...-+.+.|+..+.+-
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCc
Confidence 6543321 11234556788887653
No 273
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=4.2e-07 Score=93.81 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=99.4
Q ss_pred cccccc-hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------------
Q 007764 207 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 269 (590)
Q Consensus 207 ~~~i~G-~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~---------------- 269 (590)
|+.|.| ++..++.++..+..- .-+..+||+||+|+||+++|+++++.+...
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 566666 888888888887541 234578999999999999999999886321
Q ss_pred --------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhh
Q 007764 270 --------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (590)
Q Consensus 270 --------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (590)
+..+... +.. -.-+.++.+.+... .....|++|||+|.+- ....+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhc
Confidence 2222111 010 11234555554432 2334699999998763 234467888887
Q ss_pred ccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHH
Q 007764 338 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 387 (590)
Q Consensus 338 ~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~ 387 (590)
.... .+++|.+|+.+..+-+.+++ |. ..+++..|+.++..+.|..
T Consensus 136 EPp~--~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 EPSG--GTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCCC--CceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 6433 55555577778889999987 66 7789999999888777763
No 274
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=4.2e-08 Score=107.67 Aligned_cols=94 Identities=22% Similarity=0.391 Sum_probs=67.7
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc--------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~-------------- 542 (590)
.-+|+++.|++++++.|+..+.. -+.+..+||+||+|||||++|+++|..+.+.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 34789999999999988887542 1344569999999999999999999986432
Q ss_pred ----------EEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 543 ----------~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
++.++++. +.+-..||++.+.+... ...|+||||+|.+..
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~ 133 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK 133 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH
Confidence 23333222 11235688888876433 347999999998764
No 275
>PRK08181 transposase; Validated
Probab=98.63 E-value=2.2e-07 Score=92.35 Aligned_cols=101 Identities=23% Similarity=0.417 Sum_probs=64.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEcccccccCC
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~ 316 (590)
.+.+++|+||||||||+|+.+++.++ |..+++++..++....... ........+... ..+.+|+|||+..+..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 46789999999999999999998764 6678888888877654221 111222333333 34569999999876432
Q ss_pred CCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
. .....|+++++....+.. +|.+||.+
T Consensus 183 ~---------~~~~~Lf~lin~R~~~~s--~IiTSN~~ 209 (269)
T PRK08181 183 Q---------AETSVLFELISARYERRS--ILITANQP 209 (269)
T ss_pred H---------HHHHHHHHHHHHHHhCCC--EEEEcCCC
Confidence 1 223456666665433322 34466654
No 276
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.62 E-value=1.6e-07 Score=103.02 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|+|||||++.|++...
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35568899999999999999999999998754
No 277
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.62 E-value=5e-08 Score=100.52 Aligned_cols=94 Identities=22% Similarity=0.287 Sum_probs=63.7
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vG 557 (590)
.+++++.|.+++++.+...+.. + +.+..++|+||||+|||++|+++|.+.+.+++.+++.+ ++ +.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~ 82 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-ID 82 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HH
Confidence 4567888888888877766531 1 12345666999999999999999999998999888876 22 22
Q ss_pred chHHHHHHHHHHHh-hCCCeEEEEcccccc
Q 007764 558 ESEANVREIFDKAR-QSAPCVLFFDELDSI 586 (590)
Q Consensus 558 ese~~ir~~f~~Ar-~~~p~vlf~DEid~l 586 (590)
.....+.+...... ...+.||||||+|.+
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l 112 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRL 112 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence 11122222211111 135789999999988
No 278
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=4e-08 Score=108.20 Aligned_cols=93 Identities=23% Similarity=0.414 Sum_probs=65.3
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---------------- 541 (590)
-+|+++.|++.+.+.|...+.. + +.+..+||+||+||||||+|+++|..+.+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 4789999999999988776542 1 22334799999999999999999998865
Q ss_pred --------cEEEEeccchhhhhccchHHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 542 --------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 --------~~i~v~~~el~~~~vGese~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
+|+.+++..- . .-..+|++.+.+. .+...|+||||+|.|.+
T Consensus 81 ~i~~g~~~D~ieidaas~----~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASR----T--KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR 133 (647)
T ss_pred HHHcCCCCCceeeccccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH
Confidence 2444444321 1 1234566655543 34567999999999864
No 279
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.60 E-value=5.6e-07 Score=99.88 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.++..+.|+||+|+|||||++.|++..
T Consensus 26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 26 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999999999875
No 280
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.59 E-value=4.8e-08 Score=109.73 Aligned_cols=91 Identities=29% Similarity=0.517 Sum_probs=61.9
Q ss_pred cccccccccchhhh---cccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 007764 478 VNWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (590)
Q Consensus 478 v~~~~iggl~~vk~---~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~ 554 (590)
-+++++.|++++.. .|+..+. .....+++|||||||||||+|+++|..++.+|+.++....
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh---
Confidence 35567777776653 2333322 1223479999999999999999999999999988876421
Q ss_pred hccchHHHHHHHHHHHh-----hCCCeEEEEcccccccc
Q 007764 555 WFGESEANVREIFDKAR-----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 555 ~vGese~~ir~~f~~Ar-----~~~p~vlf~DEid~l~~ 588 (590)
..+.+++++..+. .....+|||||||.+.+
T Consensus 89 ----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 89 ----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 1234555555542 13456999999998754
No 281
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=4.6e-08 Score=111.20 Aligned_cols=94 Identities=22% Similarity=0.407 Sum_probs=64.7
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++.+++.|+..+.. + +....+||+||+||||||+|++||..+.+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 34789999999999988877542 1 23334899999999999999999998853
Q ss_pred -----------cEEEEeccchhhhhccchHHHHHHHHHH----HhhCCCeEEEEcccccccc
Q 007764 542 -----------NFISVKGPELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 -----------~~i~v~~~el~~~~vGese~~ir~~f~~----Ar~~~p~vlf~DEid~l~~ 588 (590)
+|+.+++.... .-..||++-++ ...+...|+||||+|.|..
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~ 134 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP 134 (824)
T ss_pred HHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH
Confidence 24444443211 12334444333 3345667999999999864
No 282
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=6.2e-08 Score=105.13 Aligned_cols=93 Identities=20% Similarity=0.375 Sum_probs=64.6
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---------------- 541 (590)
.+|+++.|++.+.+.|...+... +.+..+||+||+||||||+|+++|..+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 46788999999988877765421 23345899999999999999999997753
Q ss_pred --------cEEEEeccchhhhhccchHHHHHHHHHHHhh----CCCeEEEEcccccccc
Q 007764 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 --------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~ 588 (590)
+++.++++.- .| -..+|++.+.+.. +...|+||||+|.+.+
T Consensus 81 ~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~ 133 (546)
T PRK14957 81 AINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK 133 (546)
T ss_pred HHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH
Confidence 3444444221 12 1345666665543 3456999999998865
No 283
>PRK13409 putative ATPase RIL; Provisional
Probab=98.58 E-value=2.4e-07 Score=102.78 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+++.+.|.||+|+|||||++.|++.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 46788999999999999999999998753
No 284
>PHA02244 ATPase-like protein
Probab=98.58 E-value=6.2e-08 Score=98.81 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=49.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh---hccchHHHH-HHHHHHHhhCCCeEEEEccccccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM---WFGESEANV-REIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~---~vGese~~i-r~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
.+..++|+||||||||++|+++|..++.+|+.+++-.-... +++...... ..+++..++ ..+||+||++.+.|+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~--GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKK--GGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhc--CCEEEEeCcCcCCHH
Confidence 34569999999999999999999999999999874210001 112111111 123333333 369999999988765
No 285
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.58 E-value=4.2e-07 Score=102.10 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.++..+.|+||+|+|||||+++|++.+
T Consensus 37 ~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 37 FSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999999999999876
No 286
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.57 E-value=5.9e-07 Score=97.05 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=37.2
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
..|+++.|.+..++.+.-. +..+.+++|+||||||||++++.+++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 4788899988876655322 2446799999999999999999998765
No 287
>PRK06526 transposase; Provisional
Probab=98.57 E-value=2.3e-07 Score=91.73 Aligned_cols=102 Identities=21% Similarity=0.397 Sum_probs=60.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
..+.+++|+||||||||+|+.+++.++ |..+..++..+++...... ........+... ..+.+|+|||++.+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 346789999999999999999998775 5566666666665543211 011122222222 3467999999987643
Q ss_pred CCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
.. .....|..+++....+.. +|.+||.+
T Consensus 174 ~~---------~~~~~L~~li~~r~~~~s--~IitSn~~ 201 (254)
T PRK06526 174 EP---------EAANLFFQLVSSRYERAS--LIVTSNKP 201 (254)
T ss_pred CH---------HHHHHHHHHHHHHHhcCC--EEEEcCCC
Confidence 21 122344555544333322 44577765
No 288
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=6.3e-08 Score=102.63 Aligned_cols=94 Identities=23% Similarity=0.376 Sum_probs=65.7
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++.+++.|+..+.. + +.+..+||+|||||||||+|+++|..+.+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 34788999999999888776542 1 23456999999999999999999998854
Q ss_pred -----------------cEEEEeccchhhhhccchHHHHHHHHHHHhh----CCCeEEEEcccccccc
Q 007764 542 -----------------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 -----------------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~ 588 (590)
+|+.+++.+.. .-..|+++-+.+.. +...|+|+||+|.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~~------~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASNN------SVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccccC------CHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH
Confidence 23334332211 13456776666632 2346999999998864
No 289
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.56 E-value=1.9e-06 Score=95.72 Aligned_cols=54 Identities=28% Similarity=0.405 Sum_probs=45.3
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 269 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~ 269 (590)
..++.-++++.|.++.++.++..+.. +.+++|+||||||||++++++++.++..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 34567788999999999888777753 3489999999999999999999998654
No 290
>PRK09183 transposase/IS protein; Provisional
Probab=98.56 E-value=3e-07 Score=91.43 Aligned_cols=104 Identities=21% Similarity=0.384 Sum_probs=65.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEccccccc
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~p~iL~iDEid~l~ 314 (590)
+..+.+++|+||||||||+|+.+++... |..+.+++..++...+... ....+..+++.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3567899999999999999999997664 6667778877776543211 112244455544 2456799999998653
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
.+. .....|+.+++....+.. +|.|||.+
T Consensus 178 ~~~---------~~~~~lf~li~~r~~~~s--~iiTsn~~ 206 (259)
T PRK09183 178 FSQ---------EEANLFFQVIAKRYEKGS--MILTSNLP 206 (259)
T ss_pred CCh---------HHHHHHHHHHHHHHhcCc--EEEecCCC
Confidence 322 122345566655433333 34467754
No 291
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.56 E-value=2.1e-06 Score=94.34 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 275 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~----~~~~~~v~~ 275 (590)
|++++..+||+|+||+|||+|+..++... |.+.++++.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ 68 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF 68 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 57889999999999999999999775431 455666654
No 292
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=8.7e-08 Score=105.36 Aligned_cols=93 Identities=18% Similarity=0.357 Sum_probs=66.3
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---------------- 541 (590)
-+|+++.|++++.+.|...+... +.+..+||+||+||||||+|+++|..+.+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 46888889999999888875421 22344799999999999999999988754
Q ss_pred -------------cEEEEeccchhhhhccchHHHHHHHHHHHhhCC----CeEEEEcccccccc
Q 007764 542 -------------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIAT 588 (590)
Q Consensus 542 -------------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~----p~vlf~DEid~l~~ 588 (590)
+++.+++.+- ..-..+|++.+.+...+ ..|+||||+|.|.+
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN 138 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH
Confidence 2333333221 11246788887775443 46999999999865
No 293
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=7.5e-08 Score=104.27 Aligned_cols=94 Identities=24% Similarity=0.390 Sum_probs=66.1
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++++++.|+..+.. -+.+..+||+|||||||||+|+++|..+.+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 45789999999999888777542 123334699999999999999999988743
Q ss_pred --------cEEEEeccchhhhhccchHHHHHHHHHHHhh----CCCeEEEEcccccccc
Q 007764 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 --------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~ 588 (590)
+++.+++++- .+-..+|++.+.+.. ..+.|+||||+|.+..
T Consensus 78 ~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~ 130 (504)
T PRK14963 78 AVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK 130 (504)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccCH
Confidence 2444544321 123456776665543 3467999999998753
No 294
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.55 E-value=1.2e-07 Score=98.54 Aligned_cols=97 Identities=24% Similarity=0.374 Sum_probs=63.7
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC-----CcEEEEeccchhh
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELLT 553 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~-----~~~i~v~~~el~~ 553 (590)
+|+++.|.+++++.|...+.. + ...+++|+||||||||++|+++|.++. .+++.++.+++..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD 79 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh
Confidence 567778888888887776431 1 123699999999999999999999883 3577888776542
Q ss_pred hh-------------ccc-------hHHHHHHHHHHHhh-----CCCeEEEEcccccccc
Q 007764 554 MW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~-------------vGe-------se~~ir~~f~~Ar~-----~~p~vlf~DEid~l~~ 588 (590)
.+ .+. ....++++.+.+.. ..+.+||+||+|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~ 139 (337)
T PRK12402 80 QGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE 139 (337)
T ss_pred cchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH
Confidence 21 111 01233333333322 3346999999998854
No 295
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=9.5e-08 Score=104.65 Aligned_cols=93 Identities=27% Similarity=0.443 Sum_probs=64.0
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---------------- 541 (590)
-+|+++.|++++.+.|+..+.. + +.+..+||+||+||||||+|+++|..+.+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 4789999999999988877542 1 23334799999999999999999987653
Q ss_pred ----------cEEEEeccchhhhhccchHHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 542 ----------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 ----------~~i~v~~~el~~~~vGese~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
+++.++++... .-..+|++-+++. .+...|+||||+|.+..
T Consensus 78 ~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT 132 (584)
T ss_pred HhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH
Confidence 24444443211 1234555555443 33456999999998864
No 296
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=5.3e-07 Score=79.75 Aligned_cols=70 Identities=31% Similarity=0.401 Sum_probs=48.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~--~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l 313 (590)
++.++|+||.||||||+++.+++.+. ..+++++..+.......... +...+.+.......++||||++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 45799999999999999999998876 67788887665442211111 222222222235679999999876
No 297
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.54 E-value=2.5e-07 Score=95.64 Aligned_cols=196 Identities=23% Similarity=0.326 Sum_probs=114.7
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHH----hCCeEEEEechhh
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCINGPEI 278 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~----~~~~~~~v~~~~l 278 (590)
..-.+.+++|-+...+++++.+.. + -+.+.+||++|++||||+.+|++|... ...+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 445677899999999998888765 1 145789999999999999999988543 3668999999877
Q ss_pred hhhccch------------hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc------
Q 007764 279 MSKLAGE------------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK------ 340 (590)
Q Consensus 279 ~~~~~g~------------~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------ 340 (590)
....... ....-..+|+.|.. ..||+|||+.+.+. ....|+..++.-.
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCC
Confidence 5432110 11112234444433 49999999988644 2355666666411
Q ss_pred ---cCCeEEEEeecCCCCCCchhhhc---cC--CCceEEEecCCCHHHHH-HHH-------HHHhcCCCCCCccCHHHHH
Q 007764 341 ---SRAHVIVIGATNRPNSIDPALRR---FG--RFDREIDIGVPDEVGRL-EVL-------RIHTKNMKLSDDVDLERIA 404 (590)
Q Consensus 341 ---~~~~v~vI~~tn~~~~ld~al~r---~g--Rf~~~i~i~~P~~~~r~-~Il-------~~~~~~~~~~~~~~l~~la 404 (590)
...+|.+|+||+.. ++.++.. .. ++.. .+..|...+|. +|+ +..++.+...-..+..+..
T Consensus 208 ~~~~~~dVRli~AT~~~--l~~~~~~g~dl~~rl~~~--~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 208 SQPRPVDVRLICATTED--LEEAVLAGADLTRRLNIL--TITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred CCCcCCCceeeeccccC--HHHHHHhhcchhhhhcCc--eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 12368888888753 4444332 00 3334 44555555553 222 2233444333222222222
Q ss_pred HhcCCC--CH--HHHHHHHHHHHHHHH
Q 007764 405 KDTHGY--VG--ADLAALCTEAALQCI 427 (590)
Q Consensus 405 ~~t~g~--~~--~dl~~l~~~a~~~~~ 427 (590)
.....| .| .++.+++..++..+.
T Consensus 284 ~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 284 RALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 222222 33 456777776665543
No 298
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.54 E-value=3.7e-07 Score=94.07 Aligned_cols=149 Identities=22% Similarity=0.284 Sum_probs=89.9
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh--
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK-- 281 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~-- 281 (590)
++++.|.+...+.+++.+.... ..+.+|||+|++||||+++|+++-... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3568888888888877776532 345689999999999999999997654 467999999865321
Q ss_pred ---ccchhH-------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--c-------C
Q 007764 282 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S-------R 342 (590)
Q Consensus 282 ---~~g~~~-------~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~-------~ 342 (590)
..|... ......|+.+ ....|||||++.+... +...|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-----------VQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 111100 0001123322 3458999999988532 3345555554311 0 1
Q ss_pred CeEEEEeecCCC-------CCCchhhhccCCCceEEEecCCCHHHHHH
Q 007764 343 AHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (590)
Q Consensus 343 ~~v~vI~~tn~~-------~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 383 (590)
.++.+|++|+.. ..+.+.|.. ||. .+.+..|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 257788877653 123344443 552 34555666666643
No 299
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.54 E-value=2.1e-07 Score=101.13 Aligned_cols=151 Identities=28% Similarity=0.414 Sum_probs=94.5
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHH-----------hCCeEEEE
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-----------TGAFFFCI 273 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~-----------~~~~~~~v 273 (590)
..|+++.|.+..++++++.+...- ....+|||+|++||||+++|++|-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 467889999999999988876422 33568999999999999999999776 35689999
Q ss_pred echhhhhhc-----cchhHH--------HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc
Q 007764 274 NGPEIMSKL-----AGESES--------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK 340 (590)
Q Consensus 274 ~~~~l~~~~-----~g~~~~--------~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 340 (590)
||..+-... .|..+. .-...|+.+. ...||||||+.+... ....|+..++.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-----------LQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-----------HHHHHHhhhhcCe
Confidence 997653211 111000 0012344332 348999999987532 3345555554311
Q ss_pred ---------cCCeEEEEeecCCCCCCchhhhccCCCc-------eEEEecCCCHHHHHH
Q 007764 341 ---------SRAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 383 (590)
Q Consensus 341 ---------~~~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~ 383 (590)
...++.+|++|+.. +.... ..|+|. ..+.+..|...+|.+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~e 406 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVA 406 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchh
Confidence 12356788888764 32222 123332 235667777777754
No 300
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=9.3e-08 Score=103.15 Aligned_cols=94 Identities=23% Similarity=0.364 Sum_probs=67.4
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc--------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~-------------- 542 (590)
.-+|+++.|++.+.+.|...+.. -+.+..+||+||+||||||+|+++|..+.+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 44688999999998887765431 1345679999999999999999999988542
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHhhCC----CeEEEEcccccccc
Q 007764 543 --------------FISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIAT 588 (590)
Q Consensus 543 --------------~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~----p~vlf~DEid~l~~ 588 (590)
++.+++.. ..+-..+|++.+.|...+ ..|+||||++.+..
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH
Confidence 22222211 112467888988886543 46999999998854
No 301
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=1.3e-07 Score=103.97 Aligned_cols=94 Identities=28% Similarity=0.446 Sum_probs=69.4
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC----------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------------- 540 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~---------------- 540 (590)
..+|+++.|++++.+.|+..+.. -+.+..+||+||+|||||++|+.+|..+.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 34789999999999988877542 12344589999999999999999998864
Q ss_pred --------CcEEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 541 --------ANFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 541 --------~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
.+++.++++. +.+-..+|++.+++... ...|+||||+|.|..
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST 133 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 3456665532 12345788888887643 356999999998854
No 302
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=1e-07 Score=102.19 Aligned_cols=94 Identities=22% Similarity=0.410 Sum_probs=65.2
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++.+...|...+.. + +.+..+|||||||+|||++|+++|..+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 35789999999998888776542 1 23456999999999999999999987632
Q ss_pred ----------cEEEEeccchhhhhccchHHHHHHHHHHH----hhCCCeEEEEcccccccc
Q 007764 542 ----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 ----------~~i~v~~~el~~~~vGese~~ir~~f~~A----r~~~p~vlf~DEid~l~~ 588 (590)
+++.++|.+.. | -..+|++-+.+ ..+...|+||||+|.+.+
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~----g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~ 135 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHR----G--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK 135 (451)
T ss_pred HHHHhcCCCCceEEeeccccC----C--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH
Confidence 46666654321 1 12344333322 235678999999998854
No 303
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.53 E-value=4.5e-07 Score=93.44 Aligned_cols=145 Identities=22% Similarity=0.266 Sum_probs=85.0
Q ss_pred cchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc-----
Q 007764 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL----- 282 (590)
Q Consensus 211 ~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~----- 282 (590)
.|.+...+++++.+.... ....+|||+|++||||+++|++|-... +.+|+.++|..+....
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 455666666665554422 335689999999999999999997654 4689999997653211
Q ss_pred cchhH-------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc---------cCCeEE
Q 007764 283 AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVI 346 (590)
Q Consensus 283 ~g~~~-------~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~ 346 (590)
.|... ......|+.+ ....|||||++.+.. .+...|+..++.-. ...++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 11000 0001123333 346899999998743 23345555554321 123578
Q ss_pred EEeecCCC-------CCCchhhhccCCCceEEEecCCCHHHHHH
Q 007764 347 VIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (590)
Q Consensus 347 vI~~tn~~-------~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 383 (590)
+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~e 177 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQE 177 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhh
Confidence 88888754 122233332 442 35666777776654
No 304
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.1e-07 Score=103.98 Aligned_cols=94 Identities=21% Similarity=0.349 Sum_probs=63.9
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc--------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~-------------- 542 (590)
..+|+++.|++.+++.|...+.. + +....+||+||+|||||++|+++|..+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 34788999999999888877542 1 123469999999999999999999988642
Q ss_pred ----------EEEEeccchhhhhccchHHHHHHHHHHH----hhCCCeEEEEcccccccc
Q 007764 543 ----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 543 ----------~i~v~~~el~~~~vGese~~ir~~f~~A----r~~~p~vlf~DEid~l~~ 588 (590)
++.+++..-. | -..+|++-+.+ ..+...||||||+|.+..
T Consensus 80 ~~i~~g~hpDv~eId~a~~~----~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~ 133 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNR----G--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR 133 (624)
T ss_pred HHHhcCCCCceEEEeccccc----C--HHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH
Confidence 4555543211 1 12334433322 234567999999999854
No 305
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1e-07 Score=100.28 Aligned_cols=96 Identities=21% Similarity=0.380 Sum_probs=67.2
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc----------EEEE
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISV 546 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~----------~i~v 546 (590)
..+|+++.|++.+.+.+...+.. + +.+.++|||||||+|||++|+++|...... +..+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 45788999999988887776542 1 245679999999999999999999987542 2111
Q ss_pred eccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 547 KGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 547 ~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
.. +..-......++++++.++.. .+.|+|+||+|.+.+
T Consensus 81 ~l----~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~ 122 (367)
T PRK14970 81 EL----DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS 122 (367)
T ss_pred Ee----ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH
Confidence 11 111112246788888887643 346999999998754
No 306
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.3e-07 Score=93.20 Aligned_cols=97 Identities=36% Similarity=0.568 Sum_probs=71.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccch-hHHHHHHHHHHHH----hcCCeEEEEcccccccC
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~-~~~g~-~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~ 315 (590)
..+|||.||+|+|||.||+.||+.++.+|..-+|..+.. .|+|+ .+..+..+++.|. +.+..|+||||+|.|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 458999999999999999999999999999999988764 57775 4556677777653 34557999999999984
Q ss_pred CCCCCc---hhHHHHHHHHHHHhhhc
Q 007764 316 KREKTH---GEVERRIVSQLLTLMDG 338 (590)
Q Consensus 316 ~~~~~~---~~~~~~v~~~Ll~~ld~ 338 (590)
....-. +--..-+...|+.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 432211 11123455667887765
No 307
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=9.8e-08 Score=104.27 Aligned_cols=93 Identities=26% Similarity=0.419 Sum_probs=66.3
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc---------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~--------------- 542 (590)
-+|+++.|++++.+.|...+.. -+.+..+||+||+||||||+|+++|..+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4788999999999988776542 1233457999999999999999999988542
Q ss_pred ---------EEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 543 ---------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 543 ---------~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
++.++++. .-.-..+|++.+.+... ...|+||||+|.+..
T Consensus 81 ~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 81 EIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK 133 (527)
T ss_pred HHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH
Confidence 33333221 01234688888877543 346999999998864
No 308
>PRK12377 putative replication protein; Provisional
Probab=98.51 E-value=7.8e-07 Score=87.40 Aligned_cols=101 Identities=23% Similarity=0.296 Sum_probs=61.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhH--HHHHHHHHHHHhcCCeEEEEcccccccCC
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE--SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~--~~~~~~f~~a~~~~p~iL~iDEid~l~~~ 316 (590)
..+++|+||||||||+||.++++.+ +..++.++.++++........ .....+++.. ....+|+|||+.....+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC
Confidence 4689999999999999999999987 566778888877764322111 0112233333 35679999999754321
Q ss_pred CCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
......|...++.-.... ..+|-+||..
T Consensus 179 ---------~~~~~~l~~ii~~R~~~~-~ptiitSNl~ 206 (248)
T PRK12377 179 ---------KNEQVVLNQIIDRRTASM-RSVGMLTNLN 206 (248)
T ss_pred ---------HHHHHHHHHHHHHHHhcC-CCEEEEcCCC
Confidence 122345556665533322 2233467754
No 309
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.51 E-value=2.3e-07 Score=97.67 Aligned_cols=152 Identities=30% Similarity=0.423 Sum_probs=97.1
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~ 280 (590)
..+|++|.|-+.++.++.+..... ......|||+|.+||||..+|++|-+.. +.+|+.+||..+-.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 457889999998888877766542 2446789999999999999999997664 67899999964422
Q ss_pred ---------hccch----hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcc--------
Q 007764 281 ---------KLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-------- 339 (590)
Q Consensus 281 ---------~~~g~----~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-------- 339 (590)
--.|. ...--...|+.|..+ -||+|||..+.. .+...|+..+..-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl-----------~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPL-----------PLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCH-----------HHHHHHHHHHhhceEEecCCC
Confidence 11111 111112345555443 799999987742 2334455544321
Q ss_pred -ccCCeEEEEeecCCCCCCchhhhccCCCc-------eEEEecCCCHHHHHH
Q 007764 340 -KSRAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 383 (590)
Q Consensus 340 -~~~~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~ 383 (590)
.....|.+|+|||+. +..++. -|+|- .++.+..|...+|.+
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~e 424 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKE 424 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcc
Confidence 123478999999985 433333 24442 345677787777754
No 310
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=7.7e-07 Score=78.80 Aligned_cols=99 Identities=22% Similarity=0.413 Sum_probs=60.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh--------CCeEEEEechhhhh----------h----ccc--hhHHHHHHHHHH
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET--------GAFFFCINGPEIMS----------K----LAG--ESESNLRKAFEE 296 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~--------~~~~~~v~~~~l~~----------~----~~g--~~~~~~~~~f~~ 296 (590)
....++++||+|+|||++++.++..+ ...++.++++...+ . ... ........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35689999999999999999999987 66777887754431 0 011 122333344444
Q ss_pred HHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeec
Q 007764 297 AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (590)
Q Consensus 297 a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~t 351 (590)
.......+|+|||+|.+. + ....+.|..+++ .....++++|+.
T Consensus 83 l~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 444444599999999874 1 345566666666 344456666554
No 311
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.6e-07 Score=103.84 Aligned_cols=94 Identities=24% Similarity=0.444 Sum_probs=68.8
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++++++.|...+.. + +.+..+|||||+|||||++|+++|..+.+
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 35789999999999988877542 1 23445899999999999999999998743
Q ss_pred ---------cEEEEeccchhhhhccchHHHHHHHHHHHhhCC----CeEEEEcccccccc
Q 007764 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIAT 588 (590)
Q Consensus 542 ---------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~----p~vlf~DEid~l~~ 588 (590)
+++.++|+... .-..+|++.+.+...+ ..|+||||+|.+..
T Consensus 80 ~~i~~g~~~d~~eid~~s~~------~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASNT------GVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST 133 (576)
T ss_pred HHHhcCCCCCeeeeeccCcc------CHHHHHHHHHHHHhccccCCceEEEEEChhhCCH
Confidence 25555554321 2346788887776433 35999999998864
No 312
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.50 E-value=2.3e-07 Score=97.18 Aligned_cols=94 Identities=26% Similarity=0.468 Sum_probs=67.9
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC----------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------------- 540 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~---------------- 540 (590)
...|+++.|++.+++.|.+.+.. + +.+..+|||||||+|||++|+++|..+.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45789999999998888776532 1 2345689999999999999999998863
Q ss_pred --------CcEEEEeccchhhhhccchHHHHHHHHHHHhhCC----CeEEEEcccccccc
Q 007764 541 --------ANFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIAT 588 (590)
Q Consensus 541 --------~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~----p~vlf~DEid~l~~ 588 (590)
.+++.+++.+. .+-..++++++.+...+ ..|+++||+|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~ 131 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK 131 (355)
T ss_pred HHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH
Confidence 23455544321 12346888888876543 35999999998753
No 313
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.50 E-value=3.2e-07 Score=102.13 Aligned_cols=62 Identities=32% Similarity=0.552 Sum_probs=45.2
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh----------CCcEEEE
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v 546 (590)
.-+++++.|++...+.+...+.. ..+.+++|+|||||||||+|+++++.+ +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 34667788887766655443221 124579999999999999999998776 3469999
Q ss_pred eccch
Q 007764 547 KGPEL 551 (590)
Q Consensus 547 ~~~el 551 (590)
++..+
T Consensus 217 ~~~~l 221 (615)
T TIGR02903 217 DGTTL 221 (615)
T ss_pred echhc
Confidence 98764
No 314
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.50 E-value=7.6e-07 Score=85.46 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|.||+|||||||.+.+|+..
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999999999875
No 315
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.49 E-value=1.1e-06 Score=87.02 Aligned_cols=72 Identities=31% Similarity=0.532 Sum_probs=51.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHH-HHHHHHHHHHhcCCeEEEEcccccc
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSI 313 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~~-~~~~~f~~a~~~~p~iL~iDEid~l 313 (590)
.+.+++|+||||+|||+||-+|+.++ |.+++.+..++++.+....... ....-+... -....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 57899999999999999999999886 6778999999988754332221 111112221 123459999998754
No 316
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.6e-06 Score=88.11 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=28.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 509 ~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.||+.-.+.+.++||||+||+||.++|-+.+.
T Consensus 607 dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 607 DFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred cccccccceeEEECCCCccHHHHHHHHhcCCC
Confidence 45777778899999999999999999998773
No 317
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=1.6e-07 Score=102.04 Aligned_cols=93 Identities=25% Similarity=0.365 Sum_probs=65.9
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---------------- 541 (590)
.+|+++.|++.+.+.|...+.. + +.+..+||+||+|||||++|+++|..+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 4678889999998888776531 1 23456999999999999999999998742
Q ss_pred --------cEEEEeccchhhhhccchHHHHHHHHHHHhhCC----CeEEEEcccccccc
Q 007764 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIAT 588 (590)
Q Consensus 542 --------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~----p~vlf~DEid~l~~ 588 (590)
+++.++++.. . .-..+|++.+.+...+ ..|++|||+|.+..
T Consensus 81 ~i~~~~h~DiieIdaas~----i--gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~ 133 (605)
T PRK05896 81 SINTNQSVDIVELDAASN----N--GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST 133 (605)
T ss_pred HHHcCCCCceEEeccccc----c--CHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH
Confidence 3444444321 1 1235788877776543 35999999998753
No 318
>PRK06921 hypothetical protein; Provisional
Probab=98.46 E-value=9.2e-07 Score=88.22 Aligned_cols=69 Identities=29% Similarity=0.388 Sum_probs=46.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccc
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDS 312 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~ 312 (590)
.+.+++|+||+|+|||+|+.++++++ +..++++...+++....... ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999985 45677777766655432211 1112222222 3457999999954
No 319
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.46 E-value=2.5e-06 Score=87.59 Aligned_cols=160 Identities=23% Similarity=0.339 Sum_probs=101.1
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec--------
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING-------- 275 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~-------- 275 (590)
.+.|.-+.|++..+..|---... +.-.++||-|+.|+||||++|+|+..+...-....|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 35566789988876665211111 223589999999999999999999998644332222
Q ss_pred -----hh-------------------hhhhccchhHHHH-HHH-HHHHH-------------hcCCeEEEEcccccccCC
Q 007764 276 -----PE-------------------IMSKLAGESESNL-RKA-FEEAE-------------KNAPSIIFIDEIDSIAPK 316 (590)
Q Consensus 276 -----~~-------------------l~~~~~g~~~~~~-~~~-f~~a~-------------~~~p~iL~iDEid~l~~~ 316 (590)
.+ +.+.-.+.++.++ +.+ .+.+. +....|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 11 1111223344422 110 11111 1123599999998763
Q ss_pred CCCCchhHHHHHHHHHHHhhhcc-----------ccCCeEEEEeecCCCC-CCchhhhccCCCceEEEecCCC-HHHHHH
Q 007764 317 REKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLE 383 (590)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P~-~~~r~~ 383 (590)
.+++..|++.+..- ....++++|||+|+.+ .|-+.|+. ||...+.+..|. .++|.+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 45667777766431 1234789999999874 67788877 999999887764 678888
Q ss_pred HHHHHh
Q 007764 384 VLRIHT 389 (590)
Q Consensus 384 Il~~~~ 389 (590)
|.+...
T Consensus 227 Ii~r~~ 232 (423)
T COG1239 227 IIRRRL 232 (423)
T ss_pred HHHHHH
Confidence 887544
No 320
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.45 E-value=1.9e-06 Score=88.34 Aligned_cols=100 Identities=22% Similarity=0.389 Sum_probs=63.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccch---hHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~---~~~~~~~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
..+++|+||+|+|||+|+.++|+++ +..+++++..+++...... ........++... ...+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 4789999999999999999999986 6678888888876644221 0011111133332 346999999876532
Q ss_pred CCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCC
Q 007764 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (590)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~ 353 (590)
+ ......|..+++.......-++| +||.
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIi-TSNl 288 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMII-STNL 288 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEE-ECCC
Confidence 1 22335666777655443333444 5554
No 321
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.44 E-value=3.4e-07 Score=85.68 Aligned_cols=102 Identities=24% Similarity=0.447 Sum_probs=60.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~-~~~~~~~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
..+.+++|+||+|+|||+||.+++.++ +..+.+++.++++...... ........++... ...+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee-
Confidence 457899999999999999999998875 7778889988887653221 1112223344443 34699999985321
Q ss_pred CCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
........|..+++....+.. .|-|||..
T Consensus 122 --------~~~~~~~~l~~ii~~R~~~~~--tIiTSN~~ 150 (178)
T PF01695_consen 122 --------LSEWEAELLFEIIDERYERKP--TIITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT-E--EEEEESS-
T ss_pred --------ecccccccchhhhhHhhcccC--eEeeCCCc
Confidence 112334456666665444333 33377754
No 322
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.44 E-value=2.2e-07 Score=96.21 Aligned_cols=74 Identities=31% Similarity=0.510 Sum_probs=53.6
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh--hccchHHHH------------HHHHHHHhhCCCeEE
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEANV------------REIFDKARQSAPCVL 578 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~--~vGese~~i------------r~~f~~Ar~~~p~vl 578 (590)
..++++||.||||||||+||+++|...+.+|+.+.+...+.. -+|...-.. +-+|...+ +|+
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~il 116 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VIL 116 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEE
Confidence 356789999999999999999999999999999988754322 233322111 12333332 599
Q ss_pred EEcccccccccC
Q 007764 579 FFDELDSIATQV 590 (590)
Q Consensus 579 f~DEid~l~~~v 590 (590)
|+|||+...|.+
T Consensus 117 l~DEInra~p~~ 128 (329)
T COG0714 117 LLDEINRAPPEV 128 (329)
T ss_pred EEeccccCCHHH
Confidence 999999988753
No 323
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.44 E-value=1.5e-06 Score=84.92 Aligned_cols=182 Identities=30% Similarity=0.419 Sum_probs=94.6
Q ss_pred cchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEec-h--------hh
Q 007764 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCING-P--------EI 278 (590)
Q Consensus 211 ~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~---~~~v~~-~--------~l 278 (590)
.|-+++++.|.+++.. .+...++|+||.|+|||+|++.+...+... .+++.. . .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 4667777777766643 235789999999999999999999987321 111111 0 00
Q ss_pred -------------hhh-c------------cchhHHHHHHHHHHHHhc-CCeEEEEccccccc-CCCCCCchhHHHHHHH
Q 007764 279 -------------MSK-L------------AGESESNLRKAFEEAEKN-APSIIFIDEIDSIA-PKREKTHGEVERRIVS 330 (590)
Q Consensus 279 -------------~~~-~------------~g~~~~~~~~~f~~a~~~-~p~iL~iDEid~l~-~~~~~~~~~~~~~v~~ 330 (590)
... . .......+..+++..... ...+|+|||++.+. .... ......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~------~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE------DKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT------THHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc------hHHHHH
Confidence 000 0 012234456666665543 34899999999987 2211 134455
Q ss_pred HHHHhhhccccCCeEEEEeecCCCCCC----chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCC-C-CCccCHHHHH
Q 007764 331 QLLTLMDGLKSRAHVIVIGATNRPNSI----DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-L-SDDVDLERIA 404 (590)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~~tn~~~~l----d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~-~-~~~~~l~~la 404 (590)
.|.+.++......++.+|.+....... +..-.-.+|+.. +.+++.+.++..+++........ + .++.++..+.
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 666666664444444333333221101 111111347766 99999999999999988765551 1 2455677777
Q ss_pred HhcCCCCH
Q 007764 405 KDTHGYVG 412 (590)
Q Consensus 405 ~~t~g~~~ 412 (590)
..+.|+.+
T Consensus 222 ~~~gG~P~ 229 (234)
T PF01637_consen 222 SLTGGNPR 229 (234)
T ss_dssp HHHTT-HH
T ss_pred HHhCCCHH
Confidence 77777654
No 324
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=9.7e-06 Score=82.75 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=87.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a 297 (590)
+..+||+||+|+||+++|+++|+.+... ++.+...+ ++.. .-+.+|.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHHH
Confidence 4589999999999999999999876321 22232110 1111 234455544443
Q ss_pred ----HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEe
Q 007764 298 ----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (590)
Q Consensus 298 ----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i 373 (590)
..+..-|++||++|.+- ....+.|+..+++. ..++++|.+|+.++.+-|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEEP--p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLEEP--RPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 33445699999999874 23457788888874 3466777788888999999887 77 77899
Q ss_pred cCCCHHHHHHHHHHH
Q 007764 374 GVPDEVGRLEVLRIH 388 (590)
Q Consensus 374 ~~P~~~~r~~Il~~~ 388 (590)
++|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999998888777654
No 325
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.44 E-value=2.6e-06 Score=78.57 Aligned_cols=133 Identities=25% Similarity=0.355 Sum_probs=83.3
Q ss_pred chHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------------------
Q 007764 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------------------- 268 (590)
Q Consensus 212 G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~----------------------- 268 (590)
|+++.++.|.+++..- .-+..+||+||+|+||+++|+++++.+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 6777888887777642 23557999999999999999999987522
Q ss_pred eEEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCe
Q 007764 269 FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (590)
Q Consensus 269 ~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (590)
.++.++...... . -.-+.++.+..... ....-|++|||+|.+- ....+.|+..|+.... +
T Consensus 69 d~~~~~~~~~~~-~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEepp~--~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK-S--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEPPE--N 132 (162)
T ss_dssp TEEEEETTTSSS-S--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHSTTT--T
T ss_pred ceEEEecccccc-h--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCCCC--C
Confidence 123333222100 0 12245555555432 2345799999999774 3455778888887543 5
Q ss_pred EEEEeecCCCCCCchhhhccCCCceEEEecC
Q 007764 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGV 375 (590)
Q Consensus 345 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~ 375 (590)
+.+|.+|+.++.+-+.+++ |. ..+.++.
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 6677778888889899987 76 4555543
No 326
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.7e-07 Score=101.32 Aligned_cols=94 Identities=23% Similarity=0.348 Sum_probs=68.5
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc--------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~-------------- 542 (590)
..+|+++.|++.+++.|...+... +...++||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 457889999999998888775531 123469999999999999999999998652
Q ss_pred ------------EEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 543 ------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 543 ------------~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
++.+++ ..+..-..||++.+.++.. ...|+||||+|.|..
T Consensus 80 ~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~ 135 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST 135 (620)
T ss_pred HHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH
Confidence 222322 1123346889998888643 346999999998854
No 327
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.43 E-value=4.8e-07 Score=90.50 Aligned_cols=140 Identities=20% Similarity=0.287 Sum_probs=78.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEechhhhhhccchhHHHHHHHHHH-----------HHhcCCeEE
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEIMSKLAGESESNLRKAFEE-----------AEKNAPSII 305 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~---~~~v~~~~l~~~~~g~~~~~~~~~f~~-----------a~~~~p~iL 305 (590)
..++++||+||+|||||++++..-..+... ...++.+.. .+...++.+++. +..++..++
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 447899999999999999998877665432 223333221 111222222221 112345799
Q ss_pred EEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-------cCCeEEEEeecCCCC---CCchhhhccCCCceEEEecC
Q 007764 306 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------SRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGV 375 (590)
Q Consensus 306 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------~~~~v~vI~~tn~~~---~ld~al~r~gRf~~~i~i~~ 375 (590)
|+||++.-.++ ..+....-++++|+++.-.-+. .-.++.++|+++++. .+++.+.| .-..+.++.
T Consensus 105 fiDDlN~p~~d--~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r---~f~i~~~~~ 179 (272)
T PF12775_consen 105 FIDDLNMPQPD--KYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR---HFNILNIPY 179 (272)
T ss_dssp EEETTT-S-----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT---TEEEEE---
T ss_pred EecccCCCCCC--CCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh---heEEEEecC
Confidence 99999954433 3333333456666665422111 123577889888653 35666664 447899999
Q ss_pred CCHHHHHHHHHHHhc
Q 007764 376 PDEVGRLEVLRIHTK 390 (590)
Q Consensus 376 P~~~~r~~Il~~~~~ 390 (590)
|+.+....|+.....
T Consensus 180 p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 180 PSDESLNTIFSSILQ 194 (272)
T ss_dssp -TCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 999988888775543
No 328
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.43 E-value=8.2e-07 Score=97.08 Aligned_cols=133 Identities=19% Similarity=0.207 Sum_probs=81.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEE----echhhhhh-----ccchhHHHHHHHHHHHHhcCCeEEEEccc
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSK-----LAGESESNLRKAFEEAEKNAPSIIFIDEI 310 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v----~~~~l~~~-----~~g~~~~~~~~~f~~a~~~~p~iL~iDEi 310 (590)
....+|||+|+||||||++|+++++......+.. ++..+... ..|+..-..+ .+.. ....++++||+
T Consensus 234 r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G-~l~~---A~~Gil~iDEi 309 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGG-ALVL---ADNGVCCIDEF 309 (509)
T ss_pred cccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCc-cEEe---cCCCEEEEech
Confidence 3345899999999999999999999876432221 11111110 0111000000 0111 12459999999
Q ss_pred ccccCCCCCCchhHHHHHHHHHHHhhhccc-----------cCCeEEEEeecCCCC-------------CCchhhhccCC
Q 007764 311 DSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-------------SIDPALRRFGR 366 (590)
Q Consensus 311 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~-------------~ld~al~r~gR 366 (590)
+.+.+. ....|+..|+.-. -...+.+|+++|+.+ .+++++.+ |
T Consensus 310 ~~l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--R 376 (509)
T smart00350 310 DKMDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--R 376 (509)
T ss_pred hhCCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--c
Confidence 987432 2345555554321 123678999999763 47888887 9
Q ss_pred CceEE-EecCCCHHHHHHHHHHHh
Q 007764 367 FDREI-DIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 367 f~~~i-~i~~P~~~~r~~Il~~~~ 389 (590)
|+..+ ....|+.+...+|.+...
T Consensus 377 FdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 377 FDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred eeeEEEecCCCChHHHHHHHHHHH
Confidence 97754 557899988888887543
No 329
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.42 E-value=1.5e-06 Score=85.28 Aligned_cols=69 Identities=28% Similarity=0.460 Sum_probs=50.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchh---HHHHHHHHHHHHhcCCeEEEEcccccc
Q 007764 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES---ESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~---~~~~~~~f~~a~~~~p~iL~iDEid~l 313 (590)
.+++|+|+||||||+|+.+++..+ +..++.++..++........ ......+++... ..++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 589999999999999999999987 66788888888776443221 112233444432 4679999999865
No 330
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=2.9e-07 Score=101.60 Aligned_cols=94 Identities=22% Similarity=0.369 Sum_probs=65.5
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++.+++.|+..+.. -+.+..+||+||+||||||+|+++|..+.+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 34788999999999988776431 133456999999999999999999988855
Q ss_pred -----------------cEEEEeccchhhhhccchHHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 542 -----------------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 -----------------~~i~v~~~el~~~~vGese~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
+|+.+++.... +-..||++-+.+. .+..-|+++||+|.+..
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~------~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~ 141 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNN------SVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST 141 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH
Confidence 23333332211 1346677666663 33456999999998853
No 331
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=4e-07 Score=88.93 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=48.6
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.+.+++|+||+|||||++|++++..+ +.+++.++++++..+. .+++..... ..+|+|||+|.+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAG 104 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcC
Confidence 45679999999999999999999887 4578888887765432 233333332 35999999998864
No 332
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.40 E-value=2.2e-06 Score=93.96 Aligned_cols=150 Identities=28% Similarity=0.404 Sum_probs=92.9
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL 282 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~ 282 (590)
.+.+++|.+..++++.+.+...- ..+.+|||+|++||||+++|++|.... +.+|+.++|..+-...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 56789999999999888776532 345689999999999999999998774 4689999997663211
Q ss_pred -----cchhH-------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc---------c
Q 007764 283 -----AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 341 (590)
Q Consensus 283 -----~g~~~-------~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 341 (590)
.|... ......|+.+ ....|||||++.+.. .+...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCCcce
Confidence 11100 0001123333 345899999998853 23345555554311 1
Q ss_pred CCeEEEEeecCCCCCCchhhhccCCCc-------eEEEecCCCHHHHHH
Q 007764 342 RAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 383 (590)
Q Consensus 342 ~~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~ 383 (590)
..++.+|++|+.. +...+ ..++|. ..+.+..|...+|.+
T Consensus 320 ~~~~RiI~~t~~~--l~~~~-~~~~f~~dL~~rl~~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRD--LREEV-RAGRFRADLYHRLSVFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCC--HHHHH-HcCCccHHHHhcccccEeeCCCchhchh
Confidence 2367888888764 22221 112222 235566777766654
No 333
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.40 E-value=3.9e-07 Score=95.52 Aligned_cols=75 Identities=21% Similarity=0.442 Sum_probs=49.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCC-------cEEEEecc----chhhhh----ccchH--HHHHHHHHHHhhC--C
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKGP----ELLTMW----FGESE--ANVREIFDKARQS--A 574 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~-------~~i~v~~~----el~~~~----vGese--~~ir~~f~~Ar~~--~ 574 (590)
..++++|+||||||||++|+.+|..+.. .++.+..+ +++..| +|..- ....++.++|+.. .
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 3568999999999999999999988743 13333222 222222 12111 1234566777764 4
Q ss_pred CeEEEEcccccccc
Q 007764 575 PCVLFFDELDSIAT 588 (590)
Q Consensus 575 p~vlf~DEid~l~~ 588 (590)
|++||||||+...+
T Consensus 273 ~~vliIDEINRani 286 (459)
T PRK11331 273 KYVFIIDEINRANL 286 (459)
T ss_pred CcEEEEehhhccCH
Confidence 79999999998764
No 334
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.40 E-value=3.8e-06 Score=92.86 Aligned_cols=126 Identities=26% Similarity=0.394 Sum_probs=81.3
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~ 280 (590)
...++++.|.+..++++.+.+.... ....+|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 3567889999999999887776532 345689999999999999999998774 46899999976532
Q ss_pred hc-----cchhHH-------HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--------
Q 007764 281 KL-----AGESES-------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 340 (590)
Q Consensus 281 ~~-----~g~~~~-------~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 340 (590)
.. .|.... .....|.. .....|||||++.+... ....|+..++.-.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-----------FQAKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-----------HHHHHHHHHhcCcEEECCCCc
Confidence 11 110000 00001222 23468999999988532 3345555554311
Q ss_pred -cCCeEEEEeecCCC
Q 007764 341 -SRAHVIVIGATNRP 354 (590)
Q Consensus 341 -~~~~v~vI~~tn~~ 354 (590)
...++.+|++|+..
T Consensus 327 ~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 327 TLKVDVRLVAATNRD 341 (534)
T ss_pred eEeecEEEEEeCCCC
Confidence 01247788887754
No 335
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.40 E-value=3.6e-07 Score=98.63 Aligned_cols=72 Identities=26% Similarity=0.375 Sum_probs=53.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
..++||||||||||.|++++|.++ +..++.+.+.++.+.++........+-|..... .+.+|+|||++.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAG 225 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcC
Confidence 469999999999999999999988 456888898888777655433222233333333 357999999998754
No 336
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.40 E-value=5.8e-07 Score=97.84 Aligned_cols=126 Identities=29% Similarity=0.420 Sum_probs=81.4
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~ 280 (590)
...|+++.|.+...+.+++.+...- ....+|||+|++||||+++|++|-... +.+|+.+||..+-.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 3568889999999999888875422 335689999999999999999997653 56899999976532
Q ss_pred h-----ccchhH--------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-------
Q 007764 281 K-----LAGESE--------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK------- 340 (590)
Q Consensus 281 ~-----~~g~~~--------~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------- 340 (590)
. ..|..+ ..-...|+.+. ...|||||++.+... +...|+..+..-.
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-----------LQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-----------HHHHHHHHHhcCcEEecCCC
Confidence 1 111100 00112333332 348999999987532 3344555553211
Q ss_pred --cCCeEEEEeecCCC
Q 007764 341 --SRAHVIVIGATNRP 354 (590)
Q Consensus 341 --~~~~v~vI~~tn~~ 354 (590)
...++.+|++|+..
T Consensus 343 ~~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 343 EPVPVDVRVVAATHCA 358 (526)
T ss_pred ceeeecceEEeccCCC
Confidence 11245788888764
No 337
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.40 E-value=2e-06 Score=97.82 Aligned_cols=150 Identities=26% Similarity=0.391 Sum_probs=93.4
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~ 281 (590)
..|+++.|.+..++.+.+.+.... ....+|||+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 467789999998888877766422 335689999999999999999998754 568999999765321
Q ss_pred -----ccch--------hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--------
Q 007764 282 -----LAGE--------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 340 (590)
Q Consensus 282 -----~~g~--------~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 340 (590)
..|. ..... ..|+.+ ....|||||++.+.. .+...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhc---CCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCC
Confidence 1111 11111 223333 346999999998743 23345555554311
Q ss_pred -cCCeEEEEeecCCCCCCchhhhccCCCc-------eEEEecCCCHHHHHH
Q 007764 341 -SRAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 383 (590)
Q Consensus 341 -~~~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~ 383 (590)
...++.+|++|+.. +...+. .++|. ..+.+..|...+|.+
T Consensus 507 ~~~~~~RiI~~t~~~--l~~~~~-~~~f~~~L~~~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 507 IIQTDVRLIAATNRD--LKKMVA-DREFRSDLYYRLNVFPIHLPPLRERPE 554 (686)
T ss_pred cccceEEEEEeCCCC--HHHHHH-cCcccHHHHhccCeeEEeCCChhhhHh
Confidence 12467888888764 222111 12222 245677777777754
No 338
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=2.7e-06 Score=87.44 Aligned_cols=133 Identities=15% Similarity=0.240 Sum_probs=90.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCe-------------------------EEEEechhhh---------------
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAF-------------------------FFCINGPEIM--------------- 279 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~-------------------------~~~v~~~~l~--------------- 279 (590)
.-+..+||+||+|+||+++|+.+|+.+... ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 345689999999999999999999876331 1222111000
Q ss_pred ---hh----c-cchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEE
Q 007764 280 ---SK----L-AGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 347 (590)
Q Consensus 280 ---~~----~-~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~v 347 (590)
++ . ..-.-+.++.+.+... .+...|++||++|.+- ....+.|+..+++ ...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCcCcEE
Confidence 00 0 0011234555554432 2334699999999873 2345778888886 4446778
Q ss_pred EeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHH
Q 007764 348 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (590)
Q Consensus 348 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~ 388 (590)
|.+|++++.+.|.+++ |+ ..+.+++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8888999999999988 88 78999999999998888653
No 339
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.39 E-value=9.5e-07 Score=86.28 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+++++.+.|.||+|||||||++++++.+.
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34578899999999999999999999998764
No 340
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.39 E-value=3.1e-06 Score=92.86 Aligned_cols=152 Identities=23% Similarity=0.359 Sum_probs=92.0
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM 279 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~ 279 (590)
...+|+++.|.+...+++.+.+.... ....+|+|+|++||||+++|+++-... ..+|+.++|..+-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45688999999998888776664321 235679999999999999999986553 3679999997653
Q ss_pred hhc-----cchhH-------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-------
Q 007764 280 SKL-----AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK------- 340 (590)
Q Consensus 280 ~~~-----~g~~~-------~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------- 340 (590)
... .|... ......|+.+ ....|||||++.+.+. +...|+..+..-.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCCcccCCCC
Confidence 211 11100 0001223333 2458999999988532 2344555553311
Q ss_pred --cCCeEEEEeecCCCC-------CCchhhhccCCCceEEEecCCCHHHHH
Q 007764 341 --SRAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRL 382 (590)
Q Consensus 341 --~~~~v~vI~~tn~~~-------~ld~al~r~gRf~~~i~i~~P~~~~r~ 382 (590)
...++.+|++|+.+- .+.+.|.. |+. .+.+..|...+|.
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~ 381 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRP 381 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccCh
Confidence 123567888776541 12233333 543 3566667666665
No 341
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.39 E-value=3.3e-06 Score=89.06 Aligned_cols=150 Identities=27% Similarity=0.428 Sum_probs=96.4
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK- 281 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~- 281 (590)
...+++|.+...+++++.+..-- ....+|||+|++||||-++|++|-... +.+|+.+||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45679999999999988886522 345689999999999999999997664 568999999654322
Q ss_pred ----ccch----hHH---HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhc-----c----cc
Q 007764 282 ----LAGE----SES---NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-----L----KS 341 (590)
Q Consensus 282 ----~~g~----~~~---~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~----~~ 341 (590)
..|. ... +-...|+.|.. ..||+|||..+.. .+...|+..+.. + ..
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl-----------~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL-----------ELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH-----------HHHHHHHHHHHcCeeEecCCCccc
Confidence 1111 010 11123455543 4899999987742 223334444431 1 12
Q ss_pred CCeEEEEeecCCCCCCchhhhccCCCc-------eEEEecCCCHHHHHH
Q 007764 342 RAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 383 (590)
Q Consensus 342 ~~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~ 383 (590)
+.+|.||++||.. +...... |+|- .++.+..|...+|.+
T Consensus 274 ~vdvRiIaaT~~d--L~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~E 319 (464)
T COG2204 274 KVDVRIIAATNRD--LEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKE 319 (464)
T ss_pred ceeeEEEeecCcC--HHHHHHc-CCcHHHHHhhhccceecCCcccccch
Confidence 3478899999975 4433332 3442 456777788777754
No 342
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.38 E-value=2.3e-08 Score=86.26 Aligned_cols=66 Identities=35% Similarity=0.498 Sum_probs=38.8
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEEecc-chh-hhhccch----HH-----HHHHHHHHHhhCCCeEEEEccccc
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELL-TMWFGES----EA-----NVREIFDKARQSAPCVLFFDELDS 585 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~-el~-~~~vGes----e~-----~ir~~f~~Ar~~~p~vlf~DEid~ 585 (590)
|+||.|+||+|||++|+++|...+..|.+|.+. +++ +...|.+ +. .-.-+| -.|+|+|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999999774 553 2222221 11 012233 14999999998
Q ss_pred cccc
Q 007764 586 IATQ 589 (590)
Q Consensus 586 l~~~ 589 (590)
..|.
T Consensus 74 appk 77 (131)
T PF07726_consen 74 APPK 77 (131)
T ss_dssp S-HH
T ss_pred CCHH
Confidence 8764
No 343
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=3.9e-07 Score=99.99 Aligned_cols=94 Identities=24% Similarity=0.391 Sum_probs=66.0
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++.+++.|+..+.. + +.+..+|||||+|+|||++|+++|..+.+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 35789999999999988877642 1 23445999999999999999999998753
Q ss_pred ---------cEEEEeccchhhhhccchHHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 542 ---------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 ---------~~i~v~~~el~~~~vGese~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
+++.+.|..- .+-..+|++.+.+. .+...|+++||++.+..
T Consensus 80 ~~i~~~~~~dv~~idgas~------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASN------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN 133 (563)
T ss_pred HHHHcCCCCCeEEecCccc------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH
Confidence 3444443321 11245666665543 34557999999998864
No 344
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.38 E-value=6.5e-08 Score=91.01 Aligned_cols=45 Identities=40% Similarity=0.702 Sum_probs=35.4
Q ss_pred cccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 480 ~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
+++|.|++..|+.|.-+.. | +.++||+||||||||++|+.+...+
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 6788999999988765522 3 3589999999999999999999887
No 345
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.37 E-value=2.5e-06 Score=94.62 Aligned_cols=134 Identities=19% Similarity=0.288 Sum_probs=85.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhhhccchhH--HHHHH---HHHH--HHhcCCeEEEEcccccc
Q 007764 243 KGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKLAGESE--SNLRK---AFEE--AEKNAPSIIFIDEIDSI 313 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~~~--~~~~v~~~~l~~~~~g~~~--~~~~~---~f~~--a~~~~p~iL~iDEid~l 313 (590)
.+|||.|+||||||+++++++..++. +|+.+..........|... ..+.. .|+. .......+||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998764 4777764322223333211 00000 0000 00112359999999987
Q ss_pred cCCCCCCchhHHHHHHHHHHHhhhccc-----------cCCeEEEEeecCCCC---CCchhhhccCCCceEEEec-CCCH
Q 007764 314 APKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIG-VPDE 378 (590)
Q Consensus 314 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~---~ld~al~r~gRf~~~i~i~-~P~~ 378 (590)
.+ .+...|+..|+.-. ....+.+|+++|+.+ .+.+++.. ||...+.+. .|+.
T Consensus 97 ~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred CH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 43 34566777775321 113578889988765 67888887 998887766 4567
Q ss_pred HHHHHHHHHHh
Q 007764 379 VGRLEVLRIHT 389 (590)
Q Consensus 379 ~~r~~Il~~~~ 389 (590)
.+|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77888887654
No 346
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.37 E-value=1.6e-06 Score=93.29 Aligned_cols=143 Identities=23% Similarity=0.367 Sum_probs=84.3
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE--EEEechhhhh---
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--FCINGPEIMS--- 280 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~--~~v~~~~l~~--- 280 (590)
.+.++.|....++.+ . +.+..+.+++|+||||||||++++.+++.+...- ..+....+.+
T Consensus 189 d~~~v~Gq~~~~~al----~-----------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGL----E-----------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhh----h-----------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 556677766555443 1 2235678999999999999999999998764221 1111111110
Q ss_pred -----------------------hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhh
Q 007764 281 -----------------------KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (590)
Q Consensus 281 -----------------------~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (590)
...|.....-...+..|. ..+||+||++.+. ..+...|++.|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHH
Confidence 001110000011233333 3499999997652 344556666653
Q ss_pred ccc-----------cCCeEEEEeecCCCC---------------------CCchhhhccCCCceEEEecCCCHH
Q 007764 338 GLK-----------SRAHVIVIGATNRPN---------------------SIDPALRRFGRFDREIDIGVPDEV 379 (590)
Q Consensus 338 ~~~-----------~~~~v~vI~~tn~~~---------------------~ld~al~r~gRf~~~i~i~~P~~~ 379 (590)
.-. ...++.+|+++|+.. .+...+.. ||+..+.++.|+.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 221 123688999999752 24445655 99999999998866
No 347
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.36 E-value=9.1e-07 Score=95.45 Aligned_cols=67 Identities=33% Similarity=0.534 Sum_probs=52.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHh--------hCCCeEEEEcccccc
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR--------QSAPCVLFFDELDSI 586 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar--------~~~p~vlf~DEid~l 586 (590)
.+-+||+||||-||||||..+|..+|...+.++.++-- +...+++....|- ...|.+|++||||-.
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 34488999999999999999999999999999999842 3444554444443 256889999999964
Q ss_pred c
Q 007764 587 A 587 (590)
Q Consensus 587 ~ 587 (590)
-
T Consensus 400 ~ 400 (877)
T KOG1969|consen 400 P 400 (877)
T ss_pred c
Confidence 3
No 348
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=1.2e-05 Score=82.75 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=96.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC------------------------eEEEEechhhhhhccchhHHHHHHHHHH
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGA------------------------FFFCINGPEIMSKLAGESESNLRKAFEE 296 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~------------------------~~~~v~~~~l~~~~~g~~~~~~~~~f~~ 296 (590)
-+..+||+||+|+||+++|.++|+.+-. .++.+....- +. .-.-+.+|.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHHH
Confidence 3558999999999999999999987622 1222321100 00 0122344444443
Q ss_pred ----HHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEE
Q 007764 297 ----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREID 372 (590)
Q Consensus 297 ----a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~ 372 (590)
+..+...|++||++|.+- ....+.|+..+++- ..+.++|.+|+.++.+-|.+++ |. ..+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RC-q~~~ 163 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT-----------DAAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RC-RLHY 163 (334)
T ss_pred HhhccccCCceEEEEcchHhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--cc-cccc
Confidence 333455799999999774 23457788888874 4467777788889999999987 77 4689
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHH
Q 007764 373 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 373 i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~ 413 (590)
+++|+.++..+.|... .... ......++..+.|-.+.
T Consensus 164 ~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 164 LAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPGA 200 (334)
T ss_pred CCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHHH
Confidence 9999988887777532 1221 12244556666665554
No 349
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=4.1e-07 Score=101.07 Aligned_cols=94 Identities=26% Similarity=0.435 Sum_probs=63.4
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc--------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~-------------- 542 (590)
..+|+++.|++++++.|+..+.. + +.+..+||+||+|||||++|+++|..+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 34788999999999988776542 1 233457999999999999999999887431
Q ss_pred -----------EEEEeccchhhhhccchHHHHHHHHHHHhh----CCCeEEEEcccccccc
Q 007764 543 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 543 -----------~i~v~~~el~~~~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~ 588 (590)
++.+++... .+-..+|++-+.+.. +...|+||||+|.|..
T Consensus 80 c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~ 134 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST 134 (585)
T ss_pred HHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH
Confidence 233322111 112346666555443 3356999999998854
No 350
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.34 E-value=5.7e-07 Score=95.90 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=52.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhhccchHH-HHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~~~~vGese~-~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
...++||||+|||||.|++++|.++ +..++.+.+.++++.++..... .+.+..+..+. +.+|+|||++.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcC
Confidence 3468999999999999999999887 5678888888887766543221 22223233332 46999999998764
No 351
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.34 E-value=3.9e-06 Score=94.85 Aligned_cols=151 Identities=24% Similarity=0.358 Sum_probs=91.9
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~ 280 (590)
..+|+++.|.+...+++.+.+.... ....+|||+|++||||+++|++|.... +.+|+.+||..+-.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3468889999988888876665422 335679999999999999999998765 46899999976532
Q ss_pred -----hccchh----HHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-----c----C
Q 007764 281 -----KLAGES----ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----R 342 (590)
Q Consensus 281 -----~~~g~~----~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~ 342 (590)
...|.. .......|+.+ ....||||||+.+... +...|+..++.-. . .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceEE
Confidence 122211 00000012222 3468999999987532 3344555553211 0 1
Q ss_pred CeEEEEeecCCCCCCchhhhccCCCc-------eEEEecCCCHHHHH
Q 007764 343 AHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRL 382 (590)
Q Consensus 343 ~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~ 382 (590)
.++.+|++|+.. +.... ..++|. ..+.+..|...+|.
T Consensus 456 ~~~riI~~t~~~--l~~~~-~~~~f~~dL~~~l~~~~i~lPpLreR~ 499 (638)
T PRK11388 456 VDVRVIATTTAD--LAMLV-EQNRFSRQLYYALHAFEITIPPLRMRR 499 (638)
T ss_pred eeEEEEEeccCC--HHHHH-hcCCChHHHhhhhceeEEeCCChhhhh
Confidence 257788888864 22222 223331 24567777777774
No 352
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.34 E-value=5.6e-07 Score=91.00 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=51.9
Q ss_pred ccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC--CcEEEEeccchhhhhccc
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGE 558 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~--~~~i~v~~~el~~~~vGe 558 (590)
+.+.|+.+.++..--.+++ -+-+.-.++++||.||||||||.||-++|.++| .||+.+.|+|++|.-+..
T Consensus 24 ~GlVGQ~~AReAagiiv~m--------Ik~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDM--------IKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp TTEES-HHHHHHHHHHHHH--------HHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred ccccChHHHHHHHHHHHHH--------HhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 3455666666554333221 122445678899999999999999999999997 799999999998765555
Q ss_pred hHHHHHHHHHHH
Q 007764 559 SEANVREIFDKA 570 (590)
Q Consensus 559 se~~ir~~f~~A 570 (590)
+| .+-+.|++|
T Consensus 96 TE-~L~qa~Rra 106 (398)
T PF06068_consen 96 TE-ALTQAFRRA 106 (398)
T ss_dssp HH-HHHHHHHCS
T ss_pred hH-HHHHHHHHh
Confidence 54 445555544
No 353
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.34 E-value=9.2e-07 Score=86.68 Aligned_cols=70 Identities=24% Similarity=0.404 Sum_probs=52.5
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccc---hHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE---SEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGe---se~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
.+++|+||||||||+||.++|.++ +...+.+..+++++.+.+. ++....++++... ...+|+|||+....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 489999999999999999999988 6677888888888654331 1223345665554 34699999998764
No 354
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.8e-05 Score=80.60 Aligned_cols=152 Identities=18% Similarity=0.284 Sum_probs=96.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe---------------------EEEEe-chhhhh-h-ccchhHHHHHHHHHHH
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAF---------------------FFCIN-GPEIMS-K-LAGESESNLRKAFEEA 297 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~---------------------~~~v~-~~~l~~-~-~~g~~~~~~~~~f~~a 297 (590)
+..+||+||+|+||+++|.++|+.+-.. +..+. .++-.+ + ...-.-+.+|.+.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4579999999999999999998875221 22221 010000 0 0001234556555544
Q ss_pred Hh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEe
Q 007764 298 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (590)
Q Consensus 298 ~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i 373 (590)
.. +..-|++||++|.+- ....+.|+..+++... ++++|.+|+.++.+-|.+++ |+ ..+.+
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEPp~--~~~fiL~~~~~~~lLpTIrS--RC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLEEPSP--GRYLWLISAQPARLPATIRS--RC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhCCCC--CCeEEEEECChhhCchHHHh--hh-eEeeC
Confidence 32 234699999999873 2345778888887443 55666678888889999987 77 77889
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHH
Q 007764 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGAD 414 (590)
Q Consensus 374 ~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~d 414 (590)
+.|+.++-.+.|... . . +..+...++..++|-.+..
T Consensus 170 ~~~~~~~~~~~L~~~--~--~-~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 170 KLPPAHEALAWLLAQ--G--V-SERAAQEALDAARGHPGLA 205 (319)
T ss_pred CCcCHHHHHHHHHHc--C--C-ChHHHHHHHHHcCCCHHHH
Confidence 999998888777642 1 1 1222345566667665543
No 355
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=5.3e-07 Score=97.37 Aligned_cols=94 Identities=23% Similarity=0.356 Sum_probs=64.1
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++.+.+.|+..+.. -+.+..+|||||+|+||||+|+++|..+.+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 34788899999999888777542 123344789999999999999999998753
Q ss_pred ---------cEEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 542 ---------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
+++.++++.- ..-..+|.+.+.++.. .+.|+++||+|.+..
T Consensus 80 ~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK 133 (486)
T ss_pred HHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH
Confidence 1222322110 1123467776666543 456999999998853
No 356
>PRK08181 transposase; Validated
Probab=98.33 E-value=6.5e-07 Score=89.07 Aligned_cols=72 Identities=24% Similarity=0.364 Sum_probs=52.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhcc-chHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vG-ese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
...+++|+||||||||.||.++|.++ +...+.+..++++..+.. ..+....++++.... +.+|+|||+..+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~--~dLLIIDDlg~~~ 180 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDK--FDLLILDDLAYVT 180 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhc--CCEEEEecccccc
Confidence 45679999999999999999999765 666777888888876522 112334456665544 4599999997654
No 357
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=5.7e-07 Score=99.81 Aligned_cols=94 Identities=23% Similarity=0.435 Sum_probs=66.3
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc--------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~-------------- 542 (590)
..+|+++.|++.+.+.|+..+... +.+..+||+||+|||||++|+++|..+.+.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 457899999999998888776421 233458999999999999999999887542
Q ss_pred -------EEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 543 -------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 543 -------~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
++.++++. ..+-..||++.+.+... ...|++|||+|.+.+
T Consensus 82 ~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 82 NVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK 132 (725)
T ss_pred hhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH
Confidence 11111110 01234588888888754 347999999998864
No 358
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=7.6e-07 Score=95.40 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=50.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhhccch-HHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~~~~vGes-e~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
..++||||+|||||.|++++|.++ +..++.+.+.++++.++..- ...+.+ |.......+.+|+|||++.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLI 207 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhc
Confidence 359999999999999999999986 35678888888776654321 112223 333333456899999999875
No 359
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.32 E-value=2.1e-06 Score=87.32 Aligned_cols=71 Identities=25% Similarity=0.483 Sum_probs=49.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhH-HHHHHHHHHHHhcCCeEEEEcccccc
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSI 313 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~-~~~~~~f~~a~~~~p~iL~iDEid~l 313 (590)
.+.+++|+||+|||||+|+.++|+++ |..+..+..++++........ ......++.. ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 46799999999999999999999997 666778888877654322111 1122333333 34569999998643
No 360
>PRK06893 DNA replication initiation factor; Validated
Probab=98.32 E-value=6.8e-07 Score=87.45 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=40.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
..++||||||||||.|++++|++. +..|+..... +....++++..+ ...+|+|||++.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------~~~~~~~~~~~~--~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------QYFSPAVLENLE--QQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------hhhhHHHHhhcc--cCCEEEEeChhhhcC
Confidence 358999999999999999999886 2233333211 111224444444 336999999998753
No 361
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=3.5e-05 Score=80.61 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=25.7
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHH
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVAN 264 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~ 264 (590)
++.+..++..-|+|++|+|||||.|+|++
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 34567788999999999999999999998
No 362
>PRK06851 hypothetical protein; Provisional
Probab=98.31 E-value=3e-05 Score=80.14 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChhHHHHHHHHHh
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
.+-++|.|+||||||||++.++.++
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3459999999999999999999888
No 363
>PRK09183 transposase/IS protein; Provisional
Probab=98.31 E-value=1e-06 Score=87.71 Aligned_cols=73 Identities=23% Similarity=0.390 Sum_probs=52.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccc-hHHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGe-se~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
..+.+++|+||||||||+||.++|... +.....+.+++++..+... .+..+..+|++.. ..+.++++||+..+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 345679999999999999999998764 5566667778877554221 1224566776653 45579999999864
No 364
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.30 E-value=3.9e-07 Score=84.32 Aligned_cols=72 Identities=33% Similarity=0.579 Sum_probs=51.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhC---CcEEEEeccchhh-----hhccchH-------HHHHHHHHHHhhCCCeEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT-----MWFGESE-------ANVREIFDKARQSAPCVLF 579 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~---~~~i~v~~~el~~-----~~vGese-------~~ir~~f~~Ar~~~p~vlf 579 (590)
+..|||+|++||||+++|++|-..+. .+|+.|+++.+-. ..+|... +.-.-+|+.|... +||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEe
Confidence 36799999999999999999998874 5899999976522 2233321 1123677888776 899
Q ss_pred Eccccccccc
Q 007764 580 FDELDSIATQ 589 (590)
Q Consensus 580 ~DEid~l~~~ 589 (590)
||||+.|.+.
T Consensus 99 Ld~I~~L~~~ 108 (168)
T PF00158_consen 99 LDEIEDLPPE 108 (168)
T ss_dssp EETGGGS-HH
T ss_pred ecchhhhHHH
Confidence 9999999764
No 365
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.30 E-value=3.2e-05 Score=74.77 Aligned_cols=175 Identities=19% Similarity=0.202 Sum_probs=108.5
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-e---------------
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-F--------------- 269 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~-~--------------- 269 (590)
+++.+.+.++....+..+..- ..-.++++|||+|+||-|.+.++-+++-. -
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 445566666666666554431 11148999999999999999888877521 1
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHhcC---------CeEEEEcccccccCCCCCCchhHHHH
Q 007764 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEKNA---------PSIIFIDEIDSIAPKREKTHGEVERR 327 (590)
Q Consensus 270 -------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~---------p~iL~iDEid~l~~~~~~~~~~~~~~ 327 (590)
.++++.++.. ..-.-.+.+++.+..... ..+++|-|+|.|-. .
T Consensus 78 ~kklEistvsS~yHlEitPSDaG----~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~-----------d 142 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDAG----NYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR-----------D 142 (351)
T ss_pred CceEEEEEecccceEEeChhhcC----cccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-----------H
Confidence 0222222211 111223444544433322 25899999987743 2
Q ss_pred HHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHh
Q 007764 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD 406 (590)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~ 406 (590)
....|...|+.+... +.+|..+|....+-+++++ |. ..+.+|.|+.++-..++...+.+-.+. +..-+.++++.
T Consensus 143 AQ~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k 217 (351)
T KOG2035|consen 143 AQHALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK 217 (351)
T ss_pred HHHHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 334566667766654 4455567777778888887 66 668999999999999998776544332 23446777777
Q ss_pred cCCCCHH
Q 007764 407 THGYVGA 413 (590)
Q Consensus 407 t~g~~~~ 413 (590)
+.|-...
T Consensus 218 S~~nLRr 224 (351)
T KOG2035|consen 218 SNRNLRR 224 (351)
T ss_pred hcccHHH
Confidence 7765544
No 366
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.30 E-value=1.1e-06 Score=82.01 Aligned_cols=108 Identities=20% Similarity=0.378 Sum_probs=67.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhh-----------------------------------
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI----------------------------------- 278 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~--~~~~~v~~~~l----------------------------------- 278 (590)
++.+.+++-+.|+||+|||||||+|++...-. .--+.+++..+
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la 101 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh
Confidence 34578899999999999999999999976421 11233333111
Q ss_pred ----------------------------hhhccch--hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHH
Q 007764 279 ----------------------------MSKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI 328 (590)
Q Consensus 279 ----------------------------~~~~~g~--~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v 328 (590)
...|..+ ..++-|-.+.+|....|.++++||.- +.++...
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT----------SALDPEl 171 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT----------SALDPEL 171 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc----------ccCCHHH
Confidence 0011111 12334556677778899999999954 3345566
Q ss_pred HHHHHHhhhccccCCeEEEEeecCCC
Q 007764 329 VSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 329 ~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
+...+..|..+...+ ..++..|+..
T Consensus 172 v~EVL~vm~~LA~eG-mTMivVTHEM 196 (240)
T COG1126 172 VGEVLDVMKDLAEEG-MTMIIVTHEM 196 (240)
T ss_pred HHHHHHHHHHHHHcC-CeEEEEechh
Confidence 777777777766654 3444455543
No 367
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=9.3e-07 Score=97.48 Aligned_cols=98 Identities=26% Similarity=0.366 Sum_probs=67.8
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEe-c--------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-G-------- 548 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~-~-------- 548 (590)
-+|+++.|++.+++.|...+.. + +.+..+||+||+|+||||+|+++|..+.+...... +
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 4788999999999988887542 1 24557999999999999999999998865322111 1
Q ss_pred ------------cchhhhhccch---HHHHHHHHHHHhhCC----CeEEEEcccccccc
Q 007764 549 ------------PELLTMWFGES---EANVREIFDKARQSA----PCVLFFDELDSIAT 588 (590)
Q Consensus 549 ------------~el~~~~vGes---e~~ir~~f~~Ar~~~----p~vlf~DEid~l~~ 588 (590)
++++.. -..+ -..||++.+.++..+ ..|+|+||+|.+..
T Consensus 89 c~~C~~i~~g~h~Dv~e~-~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~ 146 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEM-DAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST 146 (598)
T ss_pred cHHHHHHhcCCCCceEEe-cccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH
Confidence 122110 0011 246888888876443 57999999998864
No 368
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.30 E-value=1.1e-06 Score=87.56 Aligned_cols=60 Identities=33% Similarity=0.623 Sum_probs=49.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC--CcEEEEeccchhhhhccchHHHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKAR 571 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~--~~~i~v~~~el~~~~vGese~~ir~~f~~Ar 571 (590)
+.-.++++|+.||||||||.||-++|+++| .+|.++.|+|++|--+..+| .+-+.|++|-
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE-~L~qa~RraI 122 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTE-ALTQALRRAI 122 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHH-HHHHHHHHhh
Confidence 556788999999999999999999999996 68999999999876666555 4556677664
No 369
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.29 E-value=1.6e-05 Score=86.25 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=51.3
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v 273 (590)
+..+.+.+|+.-..+-+++++.++...+. +..+.+-+||+|||||||||+++.||++++..+.+.
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 44566778888888888999988875321 223456789999999999999999999999877654
No 370
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.29 E-value=2.7e-06 Score=78.63 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=66.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhh--------hhccc-----hhHHHHHHHHHHHHhc
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------SKLAG-----ESESNLRKAFEEAEKN 300 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~--------~~~~g-----~~~~~~~~~f~~a~~~ 300 (590)
++.+.+++.+.|.||+|+|||||++.+++..... -+.+++.++. ....+ ...++.+-.+..+...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999886422 2334432221 11111 1223455567777788
Q ss_pred CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC
Q 007764 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (590)
Q Consensus 301 ~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~ 355 (590)
.|.++++||-..- ++......+.+++..+... ...+|.+|++.+
T Consensus 100 ~p~illlDEP~~~----------LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~ 143 (163)
T cd03216 100 NARLLILDEPTAA----------LTPAEVERLFKVIRRLRAQ-GVAVIFISHRLD 143 (163)
T ss_pred CCCEEEEECCCcC----------CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 9999999995432 2233334555555544333 334444666543
No 371
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.29 E-value=4e-06 Score=80.84 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=52.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----h----cc---------------chhHHHHH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----K----LA---------------GESESNLR 291 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~----~----~~---------------g~~~~~~~ 291 (590)
|++.+.-++|+||||||||+++..++... +...++++..++.. . .. .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 78889999999999999999999887543 55677777754110 0 00 01111233
Q ss_pred HHHHHHHhcCCeEEEEcccccccC
Q 007764 292 KAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 292 ~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
.+........+.+++||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 344445555788999999998864
No 372
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.29 E-value=1.3e-06 Score=89.91 Aligned_cols=92 Identities=29% Similarity=0.447 Sum_probs=59.8
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC-----CcEEEEeccchh
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELL 552 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~-----~~~i~v~~~el~ 552 (590)
.+|+++.|.+++.+.|...+.. + ...+++|+||||||||+++++++.++. .+++.++.++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~-----------~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE-----------K--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 4678888888888877766431 1 122589999999999999999999872 356666544321
Q ss_pred hhhccchHHHHHHHH-HHHhh-----CCCeEEEEcccccccc
Q 007764 553 TMWFGESEANVREIF-DKARQ-----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 553 ~~~vGese~~ir~~f-~~Ar~-----~~p~vlf~DEid~l~~ 588 (590)
+ -..+++.+ +-++. ..+.+||+||+|.+.+
T Consensus 81 ~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 81 G------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS 116 (319)
T ss_pred c------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH
Confidence 1 11222222 22222 2346999999998854
No 373
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=5.1e-06 Score=85.22 Aligned_cols=131 Identities=20% Similarity=0.292 Sum_probs=86.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC-------------------------eEEEEechh---hhhhc-cchhHHHHH
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGA-------------------------FFFCINGPE---IMSKL-AGESESNLR 291 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~-------------------------~~~~v~~~~---l~~~~-~g~~~~~~~ 291 (590)
-+..+||+||+|+|||++|+.+|+.+.. .++.+.... -.++. ..-.-+.+|
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 3568999999999999999999988631 133343211 00000 001234566
Q ss_pred HHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCC
Q 007764 292 KAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRF 367 (590)
Q Consensus 292 ~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf 367 (590)
.+.+.+.. ....|+++|+++.+- ....+.|+..++.... .+.+|.+|+.++.+.+.+++ |+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S--Rc 164 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS--RC 164 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--Hh
Confidence 66655542 334688889988763 2344667777776543 35566688888889888886 65
Q ss_pred ceEEEecCCCHHHHHHHHHH
Q 007764 368 DREIDIGVPDEVGRLEVLRI 387 (590)
Q Consensus 368 ~~~i~i~~P~~~~r~~Il~~ 387 (590)
..+.++.|+.++..+.|..
T Consensus 165 -~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 165 -RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -hhhcCCCCCHHHHHHHHHh
Confidence 6788999999888777754
No 374
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.28 E-value=4.4e-07 Score=99.43 Aligned_cols=59 Identities=31% Similarity=0.601 Sum_probs=44.2
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v~ 547 (590)
.+|+++.|++...+.++..+. + ..+.+++|+||||||||++|+++..++ +.+|+.++
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~------------~-~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALC------------G-PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHh------------C-CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 467788888877776654321 1 124579999999999999999998763 35799998
Q ss_pred cc
Q 007764 548 GP 549 (590)
Q Consensus 548 ~~ 549 (590)
+.
T Consensus 129 ~~ 130 (531)
T TIGR02902 129 AT 130 (531)
T ss_pred cc
Confidence 75
No 375
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.28 E-value=5.8e-06 Score=74.04 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.++|.||+|||||||.+++|...
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4567899999999999999999999999875
No 376
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.28 E-value=6.5e-06 Score=85.81 Aligned_cols=195 Identities=24% Similarity=0.360 Sum_probs=112.4
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~ 280 (590)
.....+|+|.+....++.+.++.-- .....|||.|.+||||..+|++|-+.. ..+|+.+||..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 4566789999999999888877532 345689999999999999999997765 46799999965432
Q ss_pred hc-----cc----hhHHH---HHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhc-----cc---
Q 007764 281 KL-----AG----ESESN---LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-----LK--- 340 (590)
Q Consensus 281 ~~-----~g----~~~~~---~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~~--- 340 (590)
.. .| ..... -+.-|+.|. ..-||+|||..+... +...|+..+.. +.
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~-----------lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLA-----------LQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecC---CCeEechhhccCCHH-----------HHHHHHHHHhhcceeecCCCc
Confidence 11 11 11111 111233333 348999999877432 22334443321 11
Q ss_pred -cCCeEEEEeecCCCCCCchhhhccCCCc-------eEEEecCCCHHHHHH--------HHHHHhcCCCCCC-ccCHHHH
Q 007764 341 -SRAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE--------VLRIHTKNMKLSD-DVDLERI 403 (590)
Q Consensus 341 -~~~~v~vI~~tn~~~~ld~al~r~gRf~-------~~i~i~~P~~~~r~~--------Il~~~~~~~~~~~-~~~l~~l 403 (590)
-+..|.+|++||+- +..+.+. |+|- .++.+..|...+|.. .++...+.+.... ...-+.+
T Consensus 354 ~ikVDVRiIAATNRD--L~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al 430 (550)
T COG3604 354 TIKVDVRVIAATNRD--LEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEAL 430 (550)
T ss_pred eeEEEEEEEeccchh--HHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHH
Confidence 13368999999984 5555443 5552 233455566555532 1122222222211 1111122
Q ss_pred HHh-cCCCCH--HHHHHHHHHHHHHH
Q 007764 404 AKD-THGYVG--ADLAALCTEAALQC 426 (590)
Q Consensus 404 a~~-t~g~~~--~dl~~l~~~a~~~~ 426 (590)
... .-.|.| +++..++.+++..+
T Consensus 431 ~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 431 ELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 111 223544 57888888888755
No 377
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.4e-07 Score=94.30 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=41.5
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
...|.|+.|++..++.+...... +.++|++||||||||++|+-+...+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccCC
Confidence 45889999999999998655533 67999999999999999999987764
No 378
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.26 E-value=2.2e-05 Score=84.90 Aligned_cols=176 Identities=21% Similarity=0.293 Sum_probs=106.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEechhhhh----------hccchh------HHHHHHHHH
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET----------GAFFFCINGPEIMS----------KLAGES------ESNLRKAFE 295 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v~~~~l~~----------~~~g~~------~~~~~~~f~ 295 (590)
+..+.+.|-||||||..++.+..++ ...++.||+-.+.+ .+.|+. -+.+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 4579999999999999999887754 24578899865543 122221 112222232
Q ss_pred HH-HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhh-c-cCCC-ceEE
Q 007764 296 EA-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALR-R-FGRF-DREI 371 (590)
Q Consensus 296 ~a-~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~-r-~gRf-~~~i 371 (590)
.+ ....++|++|||+|.|+... +.++..++.|-.. ...+++||+..|..+....-+- + ..|+ ...+
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~--------QdVlYn~fdWpt~--~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi 571 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRS--------QDVLYNIFDWPTL--KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRI 571 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhccc--------HHHHHHHhcCCcC--CCCceEEEEecccccCHHHHhccchhhhccceee
Confidence 11 22457899999999998653 2455555555433 3457788887777653322221 0 1243 2678
Q ss_pred EecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHH--HHHHHHHHHHHHH
Q 007764 372 DIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGAD--LAALCTEAALQCI 427 (590)
Q Consensus 372 ~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~d--l~~l~~~a~~~~~ 427 (590)
.|.+++..+..+|+...+.......+.-++.+|+....-+|.. .-.+|.+|..-+-
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~ 629 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAE 629 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 9999999999999998887764443333444444443333321 2345666654443
No 379
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.26 E-value=2.3e-06 Score=91.01 Aligned_cols=73 Identities=23% Similarity=0.390 Sum_probs=50.4
Q ss_pred CceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccch----------hhhhcc-------ch-HHHHHHHHHHHh
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPEL----------LTMWFG-------ES-EANVREIFDKAR 571 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el----------~~~~vG-------es-e~~ir~~f~~Ar 571 (590)
+..++++||||||||++++.++..+ +..++.+++.+. +....+ .+ +.....+++...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999877 467888887643 222222 11 233444444443
Q ss_pred h-CCCeEEEEccccccc
Q 007764 572 Q-SAPCVLFFDELDSIA 587 (590)
Q Consensus 572 ~-~~p~vlf~DEid~l~ 587 (590)
. ..+.||+|||+|.+.
T Consensus 135 ~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 135 ERDRVLIVALDDINYLF 151 (394)
T ss_pred hcCCEEEEEECCHhHhh
Confidence 3 456899999999886
No 380
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=2.6e-05 Score=79.43 Aligned_cols=127 Identities=15% Similarity=0.216 Sum_probs=87.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC-----------------------eEEEEechhhhhhccchhHHHHHHHHHHH-
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGA-----------------------FFFCINGPEIMSKLAGESESNLRKAFEEA- 297 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~-----------------------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a- 297 (590)
+..+||+||.|+||+++|+++|+.+-. .++.+.... .++.. .-+.+|.+.+.+
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~~ 101 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLAQ 101 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHHh
Confidence 458999999999999999999987521 123332211 01111 223445544333
Q ss_pred ---HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEec
Q 007764 298 ---EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIG 374 (590)
Q Consensus 298 ---~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~ 374 (590)
..+...|++||++|.+- ....+.|+..+++.. .++++|..|+.++.+-|.+++ |. ..+.++
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEPp--~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~ 165 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLEEPA--PNCLFLLVTHNQKRLLPTIVS--RC-QQWVVT 165 (319)
T ss_pred hCcccCCceEEEecchhhhC-----------HHHHHHHHHHhcCCC--CCeEEEEEECChhhChHHHHh--cc-eeEeCC
Confidence 22345699999999874 234577888888743 357777788888889999987 77 678999
Q ss_pred CCCHHHHHHHHHH
Q 007764 375 VPDEVGRLEVLRI 387 (590)
Q Consensus 375 ~P~~~~r~~Il~~ 387 (590)
.|+.++..+.|..
T Consensus 166 ~~~~~~~~~~L~~ 178 (319)
T PRK06090 166 PPSTAQAMQWLKG 178 (319)
T ss_pred CCCHHHHHHHHHH
Confidence 9999988888764
No 381
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.26 E-value=2.7e-06 Score=81.27 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.++.+..++|.||+||||||+++.|-+..
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 4668899999999999999999999997765
No 382
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.25 E-value=1.7e-06 Score=77.66 Aligned_cols=105 Identities=28% Similarity=0.515 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---eEEEEechhhhhhccchhHH
Q 007764 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGPEIMSKLAGESES 288 (590)
Q Consensus 212 G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~---~~~~v~~~~l~~~~~g~~~~ 288 (590)
|-+...+++++.+.... ....+|+|+|++||||+++|++|....+. +++.+++..+.
T Consensus 2 G~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 44455566655554321 33568999999999999999999887653 45555554422
Q ss_pred HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCC
Q 007764 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (590)
Q Consensus 289 ~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~ 353 (590)
...++.+ ....|||+|+|.+.+ .....|+.++.... ..++.+|+++..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSP-----------EAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-H-----------HHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred --HHHHHHc---CCCEEEECChHHCCH-----------HHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 2344444 556999999998843 23345556665432 334455555543
No 383
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.25 E-value=2.1e-06 Score=87.78 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=62.3
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------eEEEEec----hh
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFFCING----PE 277 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~-------~~~~v~~----~~ 277 (590)
++.|+++.++++.+.+..... .++ ...+.++|+|||||||||+|++|++.++. +++.+.+ +.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~------g~~-~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQ------GLE-ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHh------cCC-CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 799999999998877754321 111 24577899999999999999999999876 7888887 66
Q ss_pred hhhhccchhHHHHHHHHHHH
Q 007764 278 IMSKLAGESESNLRKAFEEA 297 (590)
Q Consensus 278 l~~~~~g~~~~~~~~~f~~a 297 (590)
+.....+-.....+..|.+.
T Consensus 125 ~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 125 MHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CccCCcccCCHHHHHHHHHH
Confidence 66666666677777777544
No 384
>PF05729 NACHT: NACHT domain
Probab=98.25 E-value=1.1e-05 Score=74.36 Aligned_cols=140 Identities=21% Similarity=0.311 Sum_probs=74.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechhhhhhc------------cchhHHHHHHHH-HHHHhcC
Q 007764 244 GILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEIMSKL------------AGESESNLRKAF-EEAEKNA 301 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~---------~~~~~v~~~~l~~~~------------~g~~~~~~~~~f-~~a~~~~ 301 (590)
-++|+|+||+|||++++.++..+. ..++..+..+..... ...........+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 589999999999999999987751 123344433322210 111111111111 1223455
Q ss_pred CeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhc-cccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHH
Q 007764 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (590)
Q Consensus 302 p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~ 380 (590)
..+++||.+|.+...... .........+..++.. ......+++ ++++ ..... +.+...-...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~lii--t~r~-~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLII--TSRP-RAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEE--EEcC-ChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 678999999998764332 1112233344445544 223333333 3332 22222 33311222568888889999
Q ss_pred HHHHHHHHhc
Q 007764 381 RLEVLRIHTK 390 (590)
Q Consensus 381 r~~Il~~~~~ 390 (590)
..++++.+.+
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9888887654
No 385
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.5e-06 Score=93.93 Aligned_cols=94 Identities=19% Similarity=0.339 Sum_probs=64.7
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---------------
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------------- 541 (590)
..+|+++.|++.+++.|...+.. + +.+..+|||||+|+|||++|+++|..+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 35789999999999888877542 1 23344799999999999999999988731
Q ss_pred ---------cEEEEeccchhhhhccchHHHHHHHHHHHhhC----CCeEEEEcccccccc
Q 007764 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 542 ---------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~----~p~vlf~DEid~l~~ 588 (590)
.++.++++.-. .-..||++.+.++.. ..-|+++||+|.+.+
T Consensus 78 ~~~~~~~h~dv~eldaas~~------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~ 131 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNR------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK 131 (535)
T ss_pred HHHhhcCCCeEEEecccccc------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence 23333332210 124677776655433 235999999999865
No 386
>PRK12377 putative replication protein; Provisional
Probab=98.23 E-value=2.1e-06 Score=84.34 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=49.1
Q ss_pred CceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccch--HHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGES--EANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGes--e~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
..+++|+||||||||.||.++|..+ +..++.+..++++...-..- .....++++..... .+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~--dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKV--DLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCC
Confidence 3579999999999999999999988 55677777888876432110 01122455555433 59999999654
No 387
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.22 E-value=2.6e-06 Score=89.57 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=50.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhC---------CcEEEEeccchhhh----------hc--cc-------h-HHHHHH
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPELLTM----------WF--GE-------S-EANVRE 565 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~---------~~~i~v~~~el~~~----------~v--Ge-------s-e~~ir~ 565 (590)
+..++++||||||||+++++++..+. +.++.+++.+.-+. .. |. + ++....
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 119 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRR 119 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHH
Confidence 45699999999999999999998653 56788887553221 11 11 1 233455
Q ss_pred HHHHHh-hCCCeEEEEccccccc
Q 007764 566 IFDKAR-QSAPCVLFFDELDSIA 587 (590)
Q Consensus 566 ~f~~Ar-~~~p~vlf~DEid~l~ 587 (590)
+++... ...+.||+|||+|.+.
T Consensus 120 l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 120 LYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred HHHHHHhcCCeEEEEECchhhhc
Confidence 666554 3457899999999985
No 388
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.22 E-value=1.4e-06 Score=81.52 Aligned_cols=70 Identities=30% Similarity=0.539 Sum_probs=48.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccch-HHHHHHHHHHHhhCCCeEEEEccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDS 585 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGes-e~~ir~~f~~Ar~~~p~vlf~DEid~ 585 (590)
.+.+++|+||||||||.||.++|.++ +.....++.++++...-... .....+.+++.... .+|+|||+-.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccce
Confidence 45689999999999999999999876 67778888899987642211 12234555555544 4899999864
No 389
>PRK08116 hypothetical protein; Validated
Probab=98.22 E-value=2.7e-06 Score=85.08 Aligned_cols=69 Identities=33% Similarity=0.472 Sum_probs=50.2
Q ss_pred CceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhcc----chHHHHHHHHHHHhhCCCeEEEEccccc
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG----ESEANVREIFDKARQSAPCVLFFDELDS 585 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vG----ese~~ir~~f~~Ar~~~p~vlf~DEid~ 585 (590)
+.+++|+|++|||||.||.++|.++ +.+++.+..+++++.+.. .+.....++++..... .+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~--dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA--DLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC--CEEEEecccC
Confidence 4579999999999999999999986 677888888888765421 1222233455544433 4999999953
No 390
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.22 E-value=1.8e-06 Score=92.26 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=52.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.+++||||+|+|||+|++++|.++ +..++.+...++.+.++..-...-.+.|+.... ...+|+|||++.+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSG 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcC
Confidence 569999999999999999999876 577888888777665543222111234555443 346999999998864
No 391
>PF13173 AAA_14: AAA domain
Probab=98.22 E-value=3e-06 Score=74.92 Aligned_cols=69 Identities=23% Similarity=0.381 Sum_probs=46.4
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhC--CcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~--~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
+-++|+||.||||||+++.++.... .+++.++..+.-.... .+..+.+.|.+-....+.+||||||..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRL--ADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHH--hhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999998876 6777777665533211 1111333333332235679999999876
No 392
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.20 E-value=7.6e-07 Score=94.15 Aligned_cols=75 Identities=19% Similarity=0.365 Sum_probs=44.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCC--c--EEEEeccchhhhhccch-HHHH--HHHHHHHhhC---CCeEEEEccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQA--N--FISVKGPELLTMWFGES-EANV--REIFDKARQS---APCVLFFDEL 583 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~--~--~i~v~~~el~~~~vGes-e~~i--r~~f~~Ar~~---~p~vlf~DEi 583 (590)
.+.++||+||||||||++|++||..++. + ++.+... .-+..+|.. -+.. ..-|.+.+.. ...++|+|||
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft-tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec-CcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccc
Confidence 4678999999999999999999998743 2 3333310 111223421 1111 1223333222 1248999999
Q ss_pred cccccc
Q 007764 584 DSIATQ 589 (590)
Q Consensus 584 d~l~~~ 589 (590)
..+.|.
T Consensus 117 ~rasp~ 122 (498)
T PRK13531 117 WKAGPA 122 (498)
T ss_pred ccCCHH
Confidence 988764
No 393
>PRK06526 transposase; Provisional
Probab=98.20 E-value=1.2e-06 Score=86.56 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=47.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccc-hHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGe-se~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
.+.+++|+||||||||.||.+|+.++ +...+.+..++++...... ....+.+.+.+. ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 35679999999999999999999876 4555555666666543211 111223333333 245799999998653
No 394
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=5.1e-06 Score=80.86 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 289 ~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
.-|..+++|..+.|.++++|| +...++......+.+++..++.. +..|+..|++.+.+
T Consensus 145 ~QRV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v 202 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHh
Confidence 345667788889999999999 33444555567778888888777 66666778775433
No 395
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.20 E-value=6.7e-06 Score=75.35 Aligned_cols=72 Identities=29% Similarity=0.439 Sum_probs=47.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc------------------------cchhHHHHHHHHHHH
Q 007764 245 ILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL------------------------AGESESNLRKAFEEA 297 (590)
Q Consensus 245 vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~------------------------~g~~~~~~~~~f~~a 297 (590)
++|+||||+|||+++..++... +.++++++........ ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998886 4556666553322100 000111122334555
Q ss_pred HhcCCeEEEEcccccccCC
Q 007764 298 EKNAPSIIFIDEIDSIAPK 316 (590)
Q Consensus 298 ~~~~p~iL~iDEid~l~~~ 316 (590)
....+.++++||+..+.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678899999999988654
No 396
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.20 E-value=2.7e-06 Score=83.19 Aligned_cols=62 Identities=16% Similarity=0.311 Sum_probs=44.8
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.....++|+||+|||||+||++++.++ +.+++.+++.++... +. ......+|++||+|.+.+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDD 104 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc
Confidence 345679999999999999999999876 557777777664321 11 122346899999987643
No 397
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.19 E-value=9.7e-06 Score=77.68 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|.||+|||||||+..++...
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4567899999999999999999999998753
No 398
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.19 E-value=3.2e-06 Score=86.42 Aligned_cols=109 Identities=20% Similarity=0.337 Sum_probs=70.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS--------------------------------- 280 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~~--------------------------------- 280 (590)
++.+.+++.+.|.||+||||||++|+||+..... -+.+++.++.+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 4567889999999999999999999999864211 12222211100
Q ss_pred ---------------------------hccch--hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHH
Q 007764 281 ---------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (590)
Q Consensus 281 ---------------------------~~~g~--~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (590)
++..+ ..++-|-.+..|....|.+|++|| +.+..+..+..+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE----------PlSaLD~kLR~~ 174 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE----------PLSALDAKLREQ 174 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC----------cccchhHHHHHH
Confidence 00000 112334556667778899999999 345556666677
Q ss_pred HHHhhhccccCCeEEEEeecCCC
Q 007764 332 LLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
+...+..+.....+.+|-.|++.
T Consensus 175 mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 175 MRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEECCH
Confidence 77777776666677777777765
No 399
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.19 E-value=2.7e-06 Score=86.56 Aligned_cols=71 Identities=31% Similarity=0.472 Sum_probs=51.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccc-hHHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGe-se~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
...|++|+||+|||||.||.++|.++ +.....+..++++...-.. ....+.+.++..... .+|+|||+.+-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~--dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEA--PVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCC--CEEEEecCCCc
Confidence 35789999999999999999999998 6677777888887654221 111234555555544 59999999653
No 400
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.19 E-value=4.9e-06 Score=77.69 Aligned_cols=108 Identities=16% Similarity=0.067 Sum_probs=63.1
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhh--hhhcc-chhHHHHHHHHHHHHhcCCeEEEEcccc
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--MSKLA-GESESNLRKAFEEAEKNAPSIIFIDEID 311 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l--~~~~~-g~~~~~~~~~f~~a~~~~p~iL~iDEid 311 (590)
+.+.+++.+.|.||+|+|||||++.+++..... -+.+++..+ ..... =...++.+..+..+....|.++++||-.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 346789999999999999999999999976321 233333211 00100 1112344555677777889999999954
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 312 SIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 312 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
.- ++......+..++..+..+....++.+|+..
T Consensus 100 s~----------LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 100 AY----------LDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred cc----------CCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 32 2233334444555444333323444466654
No 401
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.1e-06 Score=84.87 Aligned_cols=57 Identities=32% Similarity=0.578 Sum_probs=48.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh-hhhccch-HHHHHHHHHHH
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKA 570 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~-~~~vGes-e~~ir~~f~~A 570 (590)
-|+++|..||+|+|||.+||-||...+.|||.|....+- --|||.. |..||++.+.|
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~a 107 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHH
Confidence 468899999999999999999999999999999988763 2488865 77888777655
No 402
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.18 E-value=3.3e-07 Score=93.88 Aligned_cols=49 Identities=31% Similarity=0.476 Sum_probs=39.2
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCC-ceeEEECCCCCChhHHHHHHHHHh
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS-KGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~-~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
...|+++.|++++++.|.-... .++ .|+||+|||||||||+||++|..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~--------------~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI--------------DPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4568889999998887654311 133 579999999999999999999998
No 403
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.17 E-value=7.8e-07 Score=91.32 Aligned_cols=51 Identities=29% Similarity=0.404 Sum_probs=41.7
Q ss_pred CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 476 ~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
+...|.++.|++++|..|.-....| ..+|+||.||+|||||++||+++..+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3567889999999999887654322 23579999999999999999998887
No 404
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.17 E-value=5.6e-06 Score=84.18 Aligned_cols=109 Identities=21% Similarity=0.360 Sum_probs=68.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh-------------------------------hc
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------------------------------KL 282 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~~-------------------------------~~ 282 (590)
++.+..++.+.|.||+||||||++|.||+..... -+.+++.++.. +.
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 4567889999999999999999999999874321 12222211100 00
Q ss_pred c----chhH--------------------------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHH
Q 007764 283 A----GESE--------------------------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (590)
Q Consensus 283 ~----g~~~--------------------------~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (590)
. .+.+ ++-|-.+..|.-..|.++++|| +.+.++.++..++
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE----------PlSnLDa~lR~~m 172 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE----------PLSNLDAKLRVLM 172 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC----------chhHhhHHHHHHH
Confidence 0 1111 2223344556667899999999 4455666666777
Q ss_pred HHhhhccccCCeEEEEeecCCC
Q 007764 333 LTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 333 l~~ld~~~~~~~v~vI~~tn~~ 354 (590)
...+..+..+.+..+|-.|++.
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCH
Confidence 7777766666666666667654
No 405
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.16 E-value=1.2e-05 Score=73.65 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.++|+||+|+||||+++.|..+.
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 4567899999999999999999999998875
No 406
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.16 E-value=1.3e-06 Score=96.86 Aligned_cols=89 Identities=25% Similarity=0.404 Sum_probs=69.1
Q ss_pred cccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc----EEEEec
Q 007764 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISVKG 548 (590)
Q Consensus 473 ~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~----~i~v~~ 548 (590)
+.+|..-|+++.|+++.++.+...+. .+.+++|+||||||||++|+++|..+..+ ++.+--
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 45677788999999998887766543 23489999999999999999999999654 222322
Q ss_pred ------cchhhhhccchHHHHHHHHHHHhhCCCe
Q 007764 549 ------PELLTMWFGESEANVREIFDKARQSAPC 576 (590)
Q Consensus 549 ------~el~~~~vGese~~ir~~f~~Ar~~~p~ 576 (590)
+-+...+-|..++.++..|..|++.+|+
T Consensus 75 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 108 (608)
T TIGR00764 75 PEDPNMPRIVEVPAGEGREIVEDYKKKAFKQPSS 108 (608)
T ss_pred CCCCchHHHHHHHHhhchHHHHHHHHHhhcccch
Confidence 2334567888999999999999998875
No 407
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=2.6e-06 Score=92.87 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=54.7
Q ss_pred eeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 517 GVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.++|||++|||||.|++++|.++ +..++.+...++++.|+........+-|++-... +.+|+||||+.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~-~DLLlIDDIq~l~g 391 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYRE-MDILLVDDIQFLED 391 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhc-CCEEEEehhccccC
Confidence 49999999999999999999987 4678899999988877654433333445544443 57999999998864
No 408
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=4.8e-05 Score=78.75 Aligned_cols=187 Identities=19% Similarity=0.262 Sum_probs=122.5
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----CC-eEEEEechhhhh--
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----GA-FFFCINGPEIMS-- 280 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----~~-~~~~v~~~~l~~-- 280 (590)
..+.|-+.++..+++++..++ ..+.+..+.+.|-||+|||.+..-+-... .. ..+++||..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 348899999999999998764 34667889999999999999887654443 22 347888864321
Q ss_pred --------hc-----cchhHHHHHHHHHHHHhc--CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeE
Q 007764 281 --------KL-----AGESESNLRKAFEEAEKN--APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 345 (590)
Q Consensus 281 --------~~-----~g~~~~~~~~~f~~a~~~--~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (590)
.+ .+..+......|+.-..+ .+-++++||+|.|+.... .++..|..|-. ....++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~--------~vLy~lFewp~--lp~sr~ 290 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ--------TVLYTLFEWPK--LPNSRI 290 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc--------ceeeeehhccc--CCccee
Confidence 11 111222333444433322 367999999999984432 22233333322 234578
Q ss_pred EEEeecCCCCCCchhhhc----cCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCc--cCHHHHHHhcCCCCHH
Q 007764 346 IVIGATNRPNSIDPALRR----FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDD--VDLERIAKDTHGYVGA 413 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r----~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~--~~l~~la~~t~g~~~~ 413 (590)
++||..|..+.-|..|-| .+--+..+.|++++.++..+||.......+.... ..++..|+...+-+|.
T Consensus 291 iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD 364 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD 364 (529)
T ss_pred eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchh
Confidence 899999987655554443 2334678899999999999999988776665432 3466777777777763
No 409
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.16 E-value=2.6e-06 Score=81.99 Aligned_cols=92 Identities=33% Similarity=0.549 Sum_probs=68.5
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccc
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 550 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~e 550 (590)
....+.++++.|++.-|+.|.+... .|-+ | .|..++||+|+.|||||+++|++..++ ++..|.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~-------~Fl~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTE-------QFLQ-G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHH-------HHHc-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 3457889999999999888766532 2322 2 367789999999999999999999987 66788887665
Q ss_pred hhhhhccchHHHHHHHHHHHhhC-CCeEEEEccc
Q 007764 551 LLTMWFGESEANVREIFDKARQS-APCVLFFDEL 583 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~-~p~vlf~DEi 583 (590)
+. .+-++++..+.. .+=|||+|++
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDL 115 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDL 115 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCC
Confidence 53 355666666643 3459999975
No 410
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=6.4e-06 Score=76.77 Aligned_cols=110 Identities=24% Similarity=0.357 Sum_probs=65.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh-------h---ccc---------------hhHH
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------K---LAG---------------ESES 288 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~~-------~---~~g---------------~~~~ 288 (590)
++.+.++..+.|.||+|+|||||++.+++..... -+.+++..+.. . +.. ...+
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 3567889999999999999999999999986321 12333322110 0 000 0122
Q ss_pred HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 289 ~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+.+-.+..+....|.++++||-..- ++......+.+++..+... ..+|.+|+.++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~~~--~tii~~sh~~~~~ 158 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSA----------LDPETEALILEALRALAKG--KTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhcCC--CEEEEEecCHHHH
Confidence 3344466666788999999994432 2233344555555554332 4555567765433
No 411
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.2e-06 Score=93.90 Aligned_cols=93 Identities=22% Similarity=0.377 Sum_probs=67.9
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC-----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----------------- 540 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~----------------- 540 (590)
.+|+++.|++.+++.|...+.. + +.+..+|||||+|+|||++|+++|....
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 4788999999999988777542 1 2344589999999999999999999764
Q ss_pred --------CcEEEEeccchhhhhccchHHHHHHHHHHHhhCC----CeEEEEcccccccc
Q 007764 541 --------ANFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIAT 588 (590)
Q Consensus 541 --------~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~----p~vlf~DEid~l~~ 588 (590)
++++.+++.+.. +-..|+++.+.++..+ .-|++|||+|.+..
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNN------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred HHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH
Confidence 355555553221 2356788877775443 45999999998854
No 412
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.16 E-value=5.9e-06 Score=83.77 Aligned_cols=72 Identities=36% Similarity=0.537 Sum_probs=50.7
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhhccch
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGE 285 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~--~~~~~v~~~~l~~~~~g~ 285 (590)
+.++|+.++.+..-=++.+-.. +--.++++||.||||||||.||-++|+++| .||..++++++.+.....
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~--------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKE--------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHT--------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred ccccChHHHHHHHHHHHHHHhc--------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 4699999988776444433111 123589999999999999999999999997 689999999998876655
Q ss_pred hH
Q 007764 286 SE 287 (590)
Q Consensus 286 ~~ 287 (590)
+|
T Consensus 96 TE 97 (398)
T PF06068_consen 96 TE 97 (398)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 413
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.15 E-value=5.3e-06 Score=77.99 Aligned_cols=110 Identities=20% Similarity=0.293 Sum_probs=63.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhh---------------------------hhccch-
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM---------------------------SKLAGE- 285 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~---------------------------~~~~g~- 285 (590)
++.+.+++.+.|.||+|+|||||++.+++..... -+.+++.++. ......
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 3557889999999999999999999999976321 2333332210 000000
Q ss_pred -hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC
Q 007764 286 -SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (590)
Q Consensus 286 -~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~ 355 (590)
..++.+-.+..+....|.++++||-..- ++......+.+.+..+.......+|.+|+.++
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 1123344455666678999999995432 22233344555555443331234455666654
No 414
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.14 E-value=4.9e-06 Score=73.59 Aligned_cols=72 Identities=28% Similarity=0.434 Sum_probs=46.6
Q ss_pred CceeEEECCCCCChhHHHHHHHHHh--------CCcEEEEeccchhhh---------hcc------ch-HHHHHHHHHHH
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLTM---------WFG------ES-EANVREIFDKA 570 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~--------~~~~i~v~~~el~~~---------~vG------es-e~~ir~~f~~A 570 (590)
.+.++++||+|||||++++.++... ..+++.+..+...+. .+| .+ +...+.+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3568999999999999999999988 677787777654310 011 12 22334444444
Q ss_pred hhCCCeEEEEcccccc
Q 007764 571 RQSAPCVLFFDELDSI 586 (590)
Q Consensus 571 r~~~p~vlf~DEid~l 586 (590)
.+....+|++||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 5555459999999986
No 415
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.13 E-value=4.7e-05 Score=74.10 Aligned_cols=128 Identities=24% Similarity=0.347 Sum_probs=75.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~ 321 (590)
..+..++||+|||||..++.+|..+|..++..+|.+-++ ...+..+|.-+... .+.+.+||++.+-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~------ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSE------ 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSH------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhH------
Confidence 457789999999999999999999999999999987654 34566666655443 46999999997732
Q ss_pred hhHHHHHHHHHHHhhhccccC--------------CeEEEEeecCCC----CCCchhhhccCCCceEEEecCCCHHHHHH
Q 007764 322 GEVERRIVSQLLTLMDGLKSR--------------AHVIVIGATNRP----NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (590)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~--------------~~v~vI~~tn~~----~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 383 (590)
++..-+..++....+.+..+ ...-+..|.|+. ..+++.++ .+.+.+.+..||...-.+
T Consensus 99 -~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk---~lFRpvam~~PD~~~I~e 174 (231)
T PF12774_consen 99 -EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLK---ALFRPVAMMVPDLSLIAE 174 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHC---TTEEEEE--S--HHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHH---HHhheeEEeCCCHHHHHH
Confidence 22222223333222222221 123344466633 36777776 456889999999887766
Q ss_pred HHH
Q 007764 384 VLR 386 (590)
Q Consensus 384 Il~ 386 (590)
++-
T Consensus 175 i~L 177 (231)
T PF12774_consen 175 ILL 177 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 416
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.12 E-value=8.9e-06 Score=93.20 Aligned_cols=334 Identities=15% Similarity=0.063 Sum_probs=163.7
Q ss_pred CCCCCceEEEECCCCCcHHHH-HHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcC---------------
Q 007764 238 GVKPPKGILLYGPPGSGKTLI-ARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA--------------- 301 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtl-a~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~--------------- 301 (590)
.++..++++++||||+|||.| .-+|-.+.-..++.+|.+.-. +...+-.++++-....
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t------~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK 1563 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT------MTPSKLSVLERETEYYPNTGVVRLYPKPVVK 1563 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc------CCHHHHHHHHhhceeeccCCeEEEccCcchh
Confidence 356788999999999999985 456666666667766653211 1121222222221111
Q ss_pred CeEEEEcccccccCCCCCCchhHHHHHHHHHHHh-------hhccccCCeEEEEeecCCCCCCc--hhhhccCCCceEEE
Q 007764 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTL-------MDGLKSRAHVIVIGATNRPNSID--PALRRFGRFDREID 372 (590)
Q Consensus 302 p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~-------ld~~~~~~~v~vI~~tn~~~~ld--~al~r~gRf~~~i~ 372 (590)
..|||.|||+ +|.......+..--.+++|+.. -.....-.++++.|+||++.+.. +---|+-|-...++
T Consensus 1564 ~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf 1641 (3164)
T COG5245 1564 DLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKPVFVF 1641 (3164)
T ss_pred heEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCceEEE
Confidence 2489999999 3433222111000011222211 01112234789999999987553 22223335567788
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCC-------------ccCHHHH--------HHhcCCCCHHHHHHHHHHHHHHHHHhcc
Q 007764 373 IGVPDEVGRLEVLRIHTKNMKLSD-------------DVDLERI--------AKDTHGYVGADLAALCTEAALQCIREKM 431 (590)
Q Consensus 373 i~~P~~~~r~~Il~~~~~~~~~~~-------------~~~l~~l--------a~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (590)
+..|.......|+.+.+...-+.- .+.+-.. ...--+|.++++..+++..--.+-.+..
T Consensus 1642 ~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT~~~ 1721 (3164)
T COG5245 1642 CCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAETRID 1721 (3164)
T ss_pred ecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhcCCC
Confidence 999998888888876654332111 0111000 0112468888887776644332211110
Q ss_pred c-------ccccch------hhhhH-HHhhhhhccHHHHHhhhcCCCCCcccccccccCCcccccc--ccc---------
Q 007764 432 D-------VIDLED------ETIDA-EILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDI--GGL--------- 486 (590)
Q Consensus 432 ~-------~~~~~~------~~i~~-~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~~~~i--ggl--------- 486 (590)
. .+..+. ..... +.........+-...++.+...+...+. .+.+.++ -|+
T Consensus 1722 t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~e~~~g~i~e~-----~I~fS~Il~~g~~~l~k~dl~ 1796 (3164)
T COG5245 1722 TPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIREMIAGHIGEA-----EITFSMILFFGMACLLKKDLA 1796 (3164)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhcccchh-----hhhHHHHHhccHHHHhhhhHH
Confidence 0 000000 00000 0000000001111122221111111111 0111111 011
Q ss_pred ---chhhhccc------c--eeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh
Q 007764 487 ---ENVKRELQ------E--TVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (590)
Q Consensus 487 ---~~vk~~L~------~--~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~ 555 (590)
+++.+..- + .+...+.|.-+++|.-...+++.+|.|..|+|||.+.+.+|...+.+.+.+++-...+
T Consensus 1797 ~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~e~~~hr~~~-- 1874 (3164)
T COG5245 1797 VFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDEL-- 1874 (3164)
T ss_pred HHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCccchhhhhcccccc--
Confidence 11111100 0 1123345555666666667888999999999999999999999899988887754322
Q ss_pred ccchHHHHHHHHHHH-hhCCCeEEEEcccccc
Q 007764 556 FGESEANVREIFDKA-RQSAPCVLFFDELDSI 586 (590)
Q Consensus 556 vGese~~ir~~f~~A-r~~~p~vlf~DEid~l 586 (590)
.|+-+..+...--++ -.....++|+||--.+
T Consensus 1875 ~~Df~d~lk~~~~~~~~~~~r~Cl~I~Esi~~ 1906 (3164)
T COG5245 1875 TGDFRDSLKVQDLRRNIHGGRECLFIFESIPV 1906 (3164)
T ss_pred hhhHHHHHHHHHHhccccCCceEEEEecCCcc
Confidence 344455554443333 2344567888875433
No 417
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.12 E-value=0.00011 Score=71.47 Aligned_cols=49 Identities=31% Similarity=0.510 Sum_probs=35.8
Q ss_pred cccchHHHHHHH---HHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 007764 209 DVGGVRKQMAQI---RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA 268 (590)
Q Consensus 209 ~i~G~~~~~~~l---~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~ 268 (590)
.++|+.+..+.. .+++..- --.++.+||.||||||||.||-++++++|.
T Consensus 39 g~vGQ~~AReAagiivdlik~K-----------kmaGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 39 GFVGQENAREAAGIIVDLIKSK-----------KMAGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred ccccchhhhhhhhHHHHHHHhh-----------hccCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 367777665553 3333321 135789999999999999999999999863
No 418
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.12 E-value=7e-06 Score=74.14 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=49.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhh---hhccchhHHHHHHHHHHHHhcCCeEEEEccc
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM---SKLAGESESNLRKAFEEAEKNAPSIIFIDEI 310 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~---~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEi 310 (590)
++.+.+++.+.|.||+|+|||||++++++..... -+.+++.... ..+. ..+..+-.+..+....|.++++||-
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3557889999999999999999999999986422 1222221000 0011 1234444566777788999999995
Q ss_pred cc
Q 007764 311 DS 312 (590)
Q Consensus 311 d~ 312 (590)
..
T Consensus 98 ~~ 99 (144)
T cd03221 98 TN 99 (144)
T ss_pred cc
Confidence 43
No 419
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.12 E-value=1.9e-05 Score=80.16 Aligned_cols=115 Identities=27% Similarity=0.362 Sum_probs=70.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh----------------ccchhHHHHHHHHHHHH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----------------LAGESESNLRKAFEEAE 298 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 298 (590)
|++++.-++|+||||||||+|+..++... +..+++++..+.... .....++.+..+.+..+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 57889999999999999999988775543 556667765432210 11122333333334445
Q ss_pred hcCCeEEEEcccccccCCCCCC------chhHHHHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 299 KNAPSIIFIDEIDSIAPKREKT------HGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 299 ~~~p~iL~iDEid~l~~~~~~~------~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
...+.++++|-+.++.+..+-. ......+.+.+++..+.......++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5678999999999988642211 11233455555555555555556666665544
No 420
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.11 E-value=1.1e-05 Score=77.06 Aligned_cols=109 Identities=20% Similarity=0.304 Sum_probs=70.7
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhh---------------------------------h-
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI---------------------------------M- 279 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l---------------------------------~- 279 (590)
++.+.+++.+-|+|++|||||||++++++..... -+.+++..+ +
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 3557889999999999999999999999764211 122222110 0
Q ss_pred -----------------------------hhccch--hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHH
Q 007764 280 -----------------------------SKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI 328 (590)
Q Consensus 280 -----------------------------~~~~g~--~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v 328 (590)
.++..+ ..++-|-.+..|..-.|.+|++||.- +.++..+
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt----------SaLD~si 176 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT----------SALDVSV 176 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch----------hhhcHHH
Confidence 000000 11223444556666789999999943 4455667
Q ss_pred HHHHHHhhhccccCCeEEEEeecCCC
Q 007764 329 VSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 329 ~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
..++++++..++...+..++-.+++.
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 78888888888877777777677654
No 421
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.11 E-value=5.4e-05 Score=91.19 Aligned_cols=176 Identities=22% Similarity=0.282 Sum_probs=98.4
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE---EEEech----
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---FCINGP---- 276 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~---~~v~~~---- 276 (590)
...+++++|++..++++.+++.. +....+.+.|+|++|+||||||+++++.+...| +.++..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 34567899999999999888753 234567899999999999999999988764332 222210
Q ss_pred --hhhhh-----cc---chhHHHHH-------------HHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 277 --EIMSK-----LA---GESESNLR-------------KAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 277 --~l~~~-----~~---g~~~~~~~-------------~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
+.... +. ......+. ..+++.....+.+|++|+++.. .....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~L~ 315 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDALA 315 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHHHH
Confidence 00000 00 00000011 1122333456779999997632 1223333
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccC----HHHHHHhcCC
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVD----LERIAKDTHG 409 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~----l~~la~~t~g 409 (590)
...+..... . .||.||+.. .+.+....++.++++.|+.++..+++..++-+..... .+ ..++++.+.|
T Consensus 316 ~~~~~~~~G-s-rIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 316 GQTQWFGSG-S-RIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRAGN 387 (1153)
T ss_pred hhCccCCCC-c-EEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhCC
Confidence 222222222 2 333356543 2333234667889999999999999987764332221 12 2345555666
Q ss_pred CC
Q 007764 410 YV 411 (590)
Q Consensus 410 ~~ 411 (590)
..
T Consensus 388 LP 389 (1153)
T PLN03210 388 LP 389 (1153)
T ss_pred Cc
Confidence 54
No 422
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.10 E-value=3.1e-06 Score=86.53 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=62.3
Q ss_pred cccccchhhhcccceeecccCChhhhhhcCCC-CCceeEEECCCCCChhHHHHHHHHHhCC-------cEEEEec----c
Q 007764 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----P 549 (590)
Q Consensus 482 ~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~-~~~gvLL~GppGtGKTtLAkalA~~~~~-------~~i~v~~----~ 549 (590)
++-|+++.+.++.+.+.... .|.. ..+.++|+|||||||||||++||..++. ++..+++ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 68888888777665432211 1222 3456899999999999999999999976 8999999 7
Q ss_pred chhhhhccchHHHHHHHHHHHhh
Q 007764 550 ELLTMWFGESEANVREIFDKARQ 572 (590)
Q Consensus 550 el~~~~vGese~~ir~~f~~Ar~ 572 (590)
......++--.+.+|..|.+..+
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~~~ 146 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDEYG 146 (361)
T ss_pred CCccCCcccCCHHHHHHHHHHhC
Confidence 77777777777888888876653
No 423
>PRK06921 hypothetical protein; Provisional
Probab=98.10 E-value=3.6e-06 Score=83.99 Aligned_cols=69 Identities=25% Similarity=0.265 Sum_probs=46.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh----CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 585 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~----~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~ 585 (590)
...+++|+||||||||.||.++|.++ +...+.+...+++..... ......+.++.... ..+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~~--~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNRMKK--VEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHHhcC--CCEEEEecccc
Confidence 35679999999999999999999886 455666666666553211 11122333444433 35999999943
No 424
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=1.1e-05 Score=79.28 Aligned_cols=109 Identities=22% Similarity=0.389 Sum_probs=71.3
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEech---hh--------------------------------
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGP---EI-------------------------------- 278 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~---~l-------------------------------- 278 (590)
++.|+.++-+-|.||+|+||||++|.||+..... .+.+++. +.
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFG 101 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG 101 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhc
Confidence 4567889999999999999999999999874221 1222222 00
Q ss_pred -----------------------------hhhccch--hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHH
Q 007764 279 -----------------------------MSKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (590)
Q Consensus 279 -----------------------------~~~~~g~--~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~ 327 (590)
...|..+ ..++-|-.+..|..-.|.+|++|| +.+..+..
T Consensus 102 l~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE----------Pf~ALDa~ 171 (345)
T COG1118 102 LKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE----------PFGALDAK 171 (345)
T ss_pred ccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC----------CchhhhHH
Confidence 0001110 112334445566677899999999 45556666
Q ss_pred HHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 328 IVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
+...|..++..+..+.++..+..|++.
T Consensus 172 vr~~lr~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 172 VRKELRRWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence 777777777777777677777778765
No 425
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.10 E-value=0.00017 Score=87.72 Aligned_cols=323 Identities=19% Similarity=0.225 Sum_probs=164.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC-eEEEEechhhhhhccchhHHHHHHHHHHHH-----------hcCCeEEEEcc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGA-FFFCINGPEIMSKLAGESESNLRKAFEEAE-----------KNAPSIIFIDE 309 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~-~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~-----------~~~p~iL~iDE 309 (590)
++.++++||+|+|||.++......... .++.++.+... +......+++... ...-.++|+||
T Consensus 127 ~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~t------s~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~dd 200 (1395)
T KOG3595|consen 127 GKPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVT------SSELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDD 200 (1395)
T ss_pred CCeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeec------cHHHHHHHHHHHHHHhcccCCCCCCCceeEEEEec
Confidence 478999999999999887765544332 22223322111 1122222222111 12235899999
Q ss_pred cccccCCCCCCchhHHHHHHHHHHHhhhccc-------cCCeEEEEeecCCCC----CCchhhhccCCCceEEEecCCCH
Q 007764 310 IDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------SRAHVIVIGATNRPN----SIDPALRRFGRFDREIDIGVPDE 378 (590)
Q Consensus 310 id~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------~~~~v~vI~~tn~~~----~ld~al~r~gRf~~~i~i~~P~~ 378 (590)
++.-. .+..+......++++++..-.-+. .-.++.+++++++|. .+.+.+.| .-..+.+..|+.
T Consensus 201 inmp~--~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r---~f~~~~~~~~~~ 275 (1395)
T KOG3595|consen 201 INMPA--LDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR---HFLIVSLNYPSQ 275 (1395)
T ss_pred cCCch--hhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH---HeeeEeeCCCCh
Confidence 98543 333333334455566555432111 123688899999753 44555554 346778889998
Q ss_pred HHHHHHHHHHhcCCCC-C---------------------------------CccCHHHHHHhcCCCCH------HHHHHH
Q 007764 379 VGRLEVLRIHTKNMKL-S---------------------------------DDVDLERIAKDTHGYVG------ADLAAL 418 (590)
Q Consensus 379 ~~r~~Il~~~~~~~~~-~---------------------------------~~~~l~~la~~t~g~~~------~dl~~l 418 (590)
+....|+......+.- . .-.++..+++...|... .+...+
T Consensus 276 ~sl~~if~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~~~~~l 355 (1395)
T KOG3595|consen 276 ESLTQIFNTILTGHLRFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALLTLEDL 355 (1395)
T ss_pred hhHHHHHHHHHhcccCccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhccHHHH
Confidence 8888888766544311 0 00122333332222211 112233
Q ss_pred HHHHHHHHHHhccccc-ccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccccccccCCcccccccccchhhhcccc--
Q 007764 419 CTEAALQCIREKMDVI-DLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQE-- 495 (590)
Q Consensus 419 ~~~a~~~~~~~~~~~~-~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~~~~iggl~~vk~~L~~-- 495 (590)
.+-+...+.|-..+.. +..+.....+... ......|.... ...|........+. .-.|..+-..+.+...+..
T Consensus 356 ~~~~~~e~~rv~~drlv~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~y~~~~~~~~l~~~~~~~l 431 (1395)
T KOG3595|consen 356 IRLWVHEAIRVFADRLVDDEDRQWFDKKLQ--EVLLKLFEADS-LQMPLLYGDFRSES-HKIYEEVLSVELLRGVLEAYL 431 (1395)
T ss_pred HHHHHHHHHHhhhhhcccHHHHHHHHHHHH--HHHHHHhhhhh-hcCCceeeeccccc-ccccCchHhHHHHHHHHHHHH
Confidence 3333333333333211 1111111111111 01111111111 11111111100000 0223333333322221111
Q ss_pred --------------eeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccch-H
Q 007764 496 --------------TVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES-E 560 (590)
Q Consensus 496 --------------~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGes-e 560 (590)
...+...|.-...++-.+|.++.++.|-.|+||+++.+..+..++..++.+..... |.++. .
T Consensus 432 ~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~---y~~~~~~ 508 (1395)
T KOG3595|consen 432 KQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRS---YNIEDFR 508 (1395)
T ss_pred HHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeecccc---CcHHHHH
Confidence 12344455556667777899999999999999999999999999999988876654 33322 5
Q ss_pred HHHHHHHHHHhhCCCeEEE-Ecc
Q 007764 561 ANVREIFDKARQSAPCVLF-FDE 582 (590)
Q Consensus 561 ~~ir~~f~~Ar~~~p~vlf-~DE 582 (590)
..++.+.+.|......++| |+|
T Consensus 509 ~dl~~~~r~~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 509 EDLKAILRKAGLKNKETVFILTD 531 (1395)
T ss_pred HHHHHHHHHhccCCCceEEeech
Confidence 6678888888766655544 666
No 426
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.09 E-value=6.9e-06 Score=77.82 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=47.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCc------------------------EEEEeccchhhhhccchHHHHHHHHHH
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFDK 569 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~------------------------~i~v~~~el~~~~vGese~~ir~~f~~ 569 (590)
.+..+|||||+|+|||++|+++|...-.. |..+... +.. -+-..++++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHHH
Confidence 34569999999999999999999886321 2211110 000 123567777777
Q ss_pred Hhh----CCCeEEEEcccccccc
Q 007764 570 ARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 570 Ar~----~~p~vlf~DEid~l~~ 588 (590)
+.. +...|+||||+|.+.+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE 110 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH
Confidence 765 3457999999999865
No 427
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.09 E-value=8.5e-06 Score=90.62 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=50.4
Q ss_pred eeEEECCCCCChhHHHHHHHHHh----------CCcEEEEeccchhhhh---------c-------c-chHHHHHHHHHH
Q 007764 517 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMW---------F-------G-ESEANVREIFDK 569 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v~~~el~~~~---------v-------G-ese~~ir~~f~~ 569 (590)
.++++|+||||||++++.+..++ .+.++.|++..+-..+ + | .+...+..+|..
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQ 862 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence 35699999999999999998776 2567889885432221 1 1 123456677776
Q ss_pred Hh--hCCCeEEEEcccccccc
Q 007764 570 AR--QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 570 Ar--~~~p~vlf~DEid~l~~ 588 (590)
.. ....+||+|||||.|..
T Consensus 863 L~k~~r~v~IIILDEID~L~k 883 (1164)
T PTZ00112 863 NKKDNRNVSILIIDEIDYLIT 883 (1164)
T ss_pred hhcccccceEEEeehHhhhCc
Confidence 52 23457999999999864
No 428
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.09 E-value=1.6e-05 Score=74.28 Aligned_cols=107 Identities=22% Similarity=0.329 Sum_probs=63.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhh--------hh--cc---------------chhHHH
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------SK--LA---------------GESESN 289 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~--------~~--~~---------------g~~~~~ 289 (590)
+.+.+++.+.|.||+|+|||||++.|++..... -+.+++.++. .. +. =...++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHH
Confidence 556789999999999999999999999975321 1233332110 00 00 011233
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 290 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 290 ~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
.+-.+..+....|.++++||--.- .+.....++.+.+..+... ...+|.+|++.
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~ 156 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKAA-GATRIVIAHRP 156 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence 455667777788999999995432 2233334455555544333 33445566654
No 429
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.08 E-value=7.1e-06 Score=81.26 Aligned_cols=70 Identities=26% Similarity=0.463 Sum_probs=49.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchH--HHHHHHHHHHhhCCCeEEEEccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESE--ANVREIFDKARQSAPCVLFFDELDS 585 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese--~~ir~~f~~Ar~~~p~vlf~DEid~ 585 (590)
.+.+++|+||||+|||.||-|||.++ |...+-+..+|+++..-..-. ..-.++.+..... .+|+|||+-.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~--dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKV--DLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcC--CEEEEecccC
Confidence 56789999999999999999999888 677888899999865321110 1111233324433 5999999865
No 430
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.08 E-value=5e-06 Score=81.67 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=39.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCC---cEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~---~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
..++||||+|||||+|++++|.+... ....+...+... ...++.+...+. .+|||||++.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~~--dlliiDdi~~~~~ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQL--SLVCIDNIECIAG 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhhC--CEEEEeChhhhcC
Confidence 47999999999999999999987642 223333222111 112233333222 5899999998753
No 431
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.07 E-value=7.8e-05 Score=75.52 Aligned_cols=168 Identities=15% Similarity=0.203 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCe---EEEEechh------hhh--
Q 007764 214 RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE--TGAF---FFCINGPE------IMS-- 280 (590)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~--~~~~---~~~v~~~~------l~~-- 280 (590)
+.++++|.+.+.... .....|.|+|++|+|||+||+.++.. .... .+.++... +..
T Consensus 2 e~~~~~l~~~L~~~~-----------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS-----------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTTT-----------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-----------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 456667766664421 45678999999999999999999977 4332 23333321 111
Q ss_pred --h---c-----cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 281 --K---L-----AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 281 --~---~-----~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
. . ...........+.......+++|++|+++... ....+...+..... +..+|.|
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~--~~kilvT 135 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSFSS--GSKILVT 135 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-------------HH-------HCHHS--S-EEEEE
T ss_pred cccccccccccccccccccccccchhhhccccceeeeeeecccc-------------cccccccccccccc--ccccccc
Confidence 1 0 11112334444555556669999999987431 12222222222222 2334446
Q ss_pred cCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCC----CCCccCHHHHHHhcCCCC
Q 007764 351 TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----LSDDVDLERIAKDTHGYV 411 (590)
Q Consensus 351 tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~----~~~~~~l~~la~~t~g~~ 411 (590)
|.... +-.... .-...++++..+.++..+++........ .........++..+.|..
T Consensus 136 TR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 136 TRDRS-VAGSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp ESCGG-GGTTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H
T ss_pred ccccc-cccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 65532 222222 1257889999999999999987754433 111223567788887653
No 432
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.07 E-value=3.2e-05 Score=78.66 Aligned_cols=115 Identities=25% Similarity=0.334 Sum_probs=69.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---hCCeEEEEechhhhhh----------------ccchhHHHHHHHHHHHH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANE---TGAFFFCINGPEIMSK----------------LAGESESNLRKAFEEAE 298 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~---~~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 298 (590)
|++.+.-+.++||||||||+|+..++.. .+...++++..+-... .....++.+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 5788899999999999999999988754 3566777766432110 01112223333333345
Q ss_pred hcCCeEEEEcccccccCCCCCC--c----hhHHHHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 299 KNAPSIIFIDEIDSIAPKREKT--H----GEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 299 ~~~p~iL~iDEid~l~~~~~~~--~----~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
...+.++++|-+.++.+..+.. . .....+.+.+.+..+.......++.+|.+.+
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 5678999999999998642211 1 1122344445555555554555666665544
No 433
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=8.3e-06 Score=74.84 Aligned_cols=78 Identities=29% Similarity=0.392 Sum_probs=51.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh-------hccc-----hhHHHHHHHHHHHHhcC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------KLAG-----ESESNLRKAFEEAEKNA 301 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~~-------~~~g-----~~~~~~~~~f~~a~~~~ 301 (590)
++.+.+++.++|.||+|+|||||++++++.+... -+.+++..+.. ...+ ...+..+..+..+....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 3557889999999999999999999999986432 24444432211 1011 11233444566666677
Q ss_pred CeEEEEcccccc
Q 007764 302 PSIIFIDEIDSI 313 (590)
Q Consensus 302 p~iL~iDEid~l 313 (590)
|.++++||...-
T Consensus 99 ~~i~ilDEp~~~ 110 (157)
T cd00267 99 PDLLLLDEPTSG 110 (157)
T ss_pred CCEEEEeCCCcC
Confidence 899999996543
No 434
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=3.1e-06 Score=93.49 Aligned_cols=100 Identities=14% Similarity=0.228 Sum_probs=60.1
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEE-eccc-------
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGPE------- 550 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v-~~~e------- 550 (590)
..+++.|+++..+.++..+.-. .++..+...++|+|||||||||+++++|++++..++.. +...
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~ 153 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKND 153 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccc
Confidence 4566666666555555443211 12334455699999999999999999999998765442 1110
Q ss_pred ---------hhhhhccchHHHHHHHHHHHhh----------CCCeEEEEccccccc
Q 007764 551 ---------LLTMWFGESEANVREIFDKARQ----------SAPCVLFFDELDSIA 587 (590)
Q Consensus 551 ---------l~~~~vGese~~ir~~f~~Ar~----------~~p~vlf~DEid~l~ 587 (590)
-++.|. ..-...+++..+|.. ....|||+||++.+.
T Consensus 154 ~~~~~s~~~~~~~~~-s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~ 208 (637)
T TIGR00602 154 HKVTLSLESCFSNFQ-SQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQF 208 (637)
T ss_pred cccchhhhhcccccc-chHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhc
Confidence 011111 112345566666642 346799999997654
No 435
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.05 E-value=2.6e-05 Score=72.76 Aligned_cols=109 Identities=16% Similarity=0.220 Sum_probs=62.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------------EEEEechhhhhhc----------cch--hHHHH
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------------FFCINGPEIMSKL----------AGE--SESNL 290 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~-------------~~~v~~~~l~~~~----------~g~--~~~~~ 290 (590)
++.+.++..+.|.||+|+|||||++++....|.. +.++...+.+..+ ... ..++.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 3567889999999999999999999996432221 1111111111110 011 12344
Q ss_pred HHHHHHHHhcC--CeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC
Q 007764 291 RKAFEEAEKNA--PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (590)
Q Consensus 291 ~~~f~~a~~~~--p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~ 355 (590)
+-.+..+.... |.++++||-..- ++......+.+.+..+... ...+|.+|+.++
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~~~-g~tvIivSH~~~ 150 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLIDL-GNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 55566666778 999999995432 3333445555555554433 334455666653
No 436
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.9e-05 Score=87.71 Aligned_cols=129 Identities=23% Similarity=0.320 Sum_probs=87.7
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS---- 280 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~---- 280 (590)
+.|+|+++++..|-+.+..+... +.+. .+.-.++|.||.|+|||-||+++|..+ ...++.++.++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g--l~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG--LKDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc--cCCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 34899999999998888764311 1101 356779999999999999999999986 34588898886432
Q ss_pred -----hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc---------CCeEE
Q 007764 281 -----KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS---------RAHVI 346 (590)
Q Consensus 281 -----~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~---------~~~v~ 346 (590)
.|.|.. ....+.+..++...+|++|||||.- +..+...|+.++|.-+- -.+++
T Consensus 637 igsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 637 IGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred cCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 133332 2335555555566689999999853 23455666677764331 23688
Q ss_pred EEeecCCC
Q 007764 347 VIGATNRP 354 (590)
Q Consensus 347 vI~~tn~~ 354 (590)
||.|+|.-
T Consensus 704 ~IMTsn~~ 711 (898)
T KOG1051|consen 704 FIMTSNVG 711 (898)
T ss_pred EEEecccc
Confidence 88888763
No 437
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.04 E-value=7.2e-06 Score=84.65 Aligned_cols=70 Identities=33% Similarity=0.540 Sum_probs=52.7
Q ss_pred eeEEECCCCCChhHHHHHHHHHhC------------------------CcEEEEeccchhhhhccchHHHHHHHHHHHhh
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISVKGPELLTMWFGESEANVREIFDKARQ 572 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~------------------------~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~ 572 (590)
-+||+||||||||++|.++|.++. .+|+.++.++.-.. ......||++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--cchHHHHHHHHHHhcc
Confidence 399999999999999999999986 57888887775332 1234456666555433
Q ss_pred ----CCCeEEEEcccccccc
Q 007764 573 ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 573 ----~~p~vlf~DEid~l~~ 588 (590)
+..-|+++||+|++.+
T Consensus 104 ~~~~~~~kviiidead~mt~ 123 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE 123 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH
Confidence 3467999999999875
No 438
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.04 E-value=1.1e-06 Score=85.47 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=28.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA 268 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~ 268 (590)
++.+.+++.++|+|++|||||||++.+++.+..
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence 356788999999999999999999999987643
No 439
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.04 E-value=2.5e-05 Score=80.49 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=25.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
.+++-+-|.||+|+||||.++.|++++-
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 4677899999999999999999999863
No 440
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=1.7e-05 Score=74.04 Aligned_cols=109 Identities=19% Similarity=0.224 Sum_probs=64.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhh-------h----------hccc---------hhH
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM-------S----------KLAG---------ESE 287 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~-------~----------~~~g---------~~~ 287 (590)
++.+.+++.+.|.||+|+|||||++.+++..... -+.+++.++. . .+.+ ...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3557889999999999999999999999875321 1222221110 0 0000 112
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC
Q 007764 288 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (590)
Q Consensus 288 ~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~ 355 (590)
++.+-.+..+....|.++++||-..-+ +......+.+++..+..+. ..+|.+|+.++
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~~~g-~tiii~th~~~ 156 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELKKEG-KTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHHHCC-CEEEEECCCHH
Confidence 234455677777889999999955432 2333344555555544432 34445666543
No 441
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.03 E-value=1.4e-05 Score=77.80 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=72.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhh-------------------------hhccch--h
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM-------------------------SKLAGE--S 286 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~-------------------------~~~~g~--~ 286 (590)
++.+..++.+.|+|.+||||||+++.+.+..... -+..++.++. .+|..+ .
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 3457889999999999999999999999886532 2333332221 111111 1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 287 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 287 ~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
.++-|-.+..|..-.|.+++.||..+.+ +..+..|+++++..+....++..+-.+++.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 2334555677778889999999966543 345667888888777776666555556543
No 442
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.01 E-value=3.9e-05 Score=74.87 Aligned_cols=39 Identities=38% Similarity=0.562 Sum_probs=33.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGP 276 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~ 276 (590)
|+..+.-++|+||||+|||+++..++... +..+++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67889999999999999999999998653 6667777765
No 443
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.01 E-value=2.8e-05 Score=74.35 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+|.+++++++.|+||+|+|||||++.++++.
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 3567899999999999999999999998875
No 444
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.00 E-value=1.4e-05 Score=81.98 Aligned_cols=70 Identities=29% Similarity=0.490 Sum_probs=50.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccc---hHHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE---SEANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGe---se~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
..+++|+||+|||||.||.++|.++ +...+.+..++++...... ........++..... .+|+||++...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~--DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINC--DLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccC--CEEEEeccCCC
Confidence 3789999999999999999999987 6678888888887654221 111112234554444 59999999654
No 445
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=6.8e-06 Score=84.45 Aligned_cols=94 Identities=22% Similarity=0.341 Sum_probs=62.2
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC--------cEEEEeccc
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISVKGPE 550 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--------~~i~v~~~e 550 (590)
+|+++.|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|..+-+ +|+.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588899999998888776531 123345799999999999999999997632 233332110
Q ss_pred hhhhhccchHHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 551 LLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
++.+ +-..||++-+.+. .+...|++||++|.+.+
T Consensus 70 --~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~ 107 (313)
T PRK05564 70 --KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE 107 (313)
T ss_pred --CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH
Confidence 0101 1234777666443 34456999999998764
No 446
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.99 E-value=1.3e-05 Score=76.61 Aligned_cols=76 Identities=25% Similarity=0.496 Sum_probs=49.3
Q ss_pred hhcCCCCCceeEEECCCCCChhHHHHHHHHHh-----CCc-------------EEEEeccchh----hhhccchHHHHHH
Q 007764 508 EKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QAN-------------FISVKGPELL----TMWFGESEANVRE 565 (590)
Q Consensus 508 ~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~-----~~~-------------~i~v~~~el~----~~~vGese~~ir~ 565 (590)
..+.+..++-++|.||||||||||.|.++... |.+ |......|-+ +.+-.+ -+.+++
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e-~~~~~~ 96 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAE-LRRLKE 96 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHH-HHHHHH
Confidence 34455566779999999999999999999544 321 1222222221 111111 145788
Q ss_pred HHHHHhhCCCeEEEEcccc
Q 007764 566 IFDKARQSAPCVLFFDELD 584 (590)
Q Consensus 566 ~f~~Ar~~~p~vlf~DEid 584 (590)
+++.+....|.++++||.-
T Consensus 97 iL~~~~~~~p~llllDEp~ 115 (199)
T cd03283 97 IVEKAKKGEPVLFLLDEIF 115 (199)
T ss_pred HHHhccCCCCeEEEEeccc
Confidence 8888876688999999963
No 447
>PRK08727 hypothetical protein; Validated
Probab=97.99 E-value=1.5e-05 Score=78.14 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=43.4
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
..++|+||+|||||.|+.+++.++ +...+.+...++ ...+.+++++..+. .+|++||++.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~~~--dlLiIDDi~~l~ 106 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALEGR--SLVALDGLESIA 106 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHhcC--CEEEEeCccccc
Confidence 459999999999999999998776 333344433332 23444566665544 599999999875
No 448
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.99 E-value=5.9e-05 Score=73.73 Aligned_cols=77 Identities=18% Similarity=0.313 Sum_probs=48.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHH-HHHh--CCeEEEEechh----hhhhc-------------------------c--
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAV-ANET--GAFFFCINGPE----IMSKL-------------------------A-- 283 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~l-a~~~--~~~~~~v~~~~----l~~~~-------------------------~-- 283 (590)
|++++..++|+||||||||+++..+ ++.+ +...++++..+ +.... .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 5678899999999999999997554 4332 44555555432 11100 0
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEccccccc
Q 007764 284 GESESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (590)
Q Consensus 284 g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~ 314 (590)
.+.+..+..+........|.++++||+..+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 0113344455555555678899999998765
No 449
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.98 E-value=3.9e-05 Score=71.99 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=63.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh------h---ccc------------------hh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS------K---LAG------------------ES 286 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~~------~---~~g------------------~~ 286 (590)
++.+.+++.+.|.||+|+|||||++.+++..... -+.+++.++.. . |.. ..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4567899999999999999999999999985321 23333322110 0 000 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC
Q 007764 287 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (590)
Q Consensus 287 ~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~ 355 (590)
.++.+-.+..+....|.++++||-..-+ +......+.+.+..+.. . ..+|.+|+.++
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~~-~-~tii~~sh~~~ 158 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVLK-D-KTLIWITHHLT 158 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHcC-C-CEEEEEecCHH
Confidence 2334555667777889999999955332 22333444455544432 2 34444666654
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.98 E-value=2e-05 Score=72.13 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=45.3
Q ss_pred eEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhh----------------------hccc--hHHHHHHHHHHH
Q 007764 518 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----------------------WFGE--SEANVREIFDKA 570 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~----------------------~vGe--se~~ir~~f~~A 570 (590)
++++||||||||++++.++... +.+.+.+...+..+. +.+. .+...+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 344444433322210 0011 111223345666
Q ss_pred hhCCCeEEEEccccccc
Q 007764 571 RQSAPCVLFFDELDSIA 587 (590)
Q Consensus 571 r~~~p~vlf~DEid~l~ 587 (590)
....|.++++||+.++.
T Consensus 82 ~~~~~~~lviDe~~~~~ 98 (165)
T cd01120 82 ERGGDDLIILDELTRLV 98 (165)
T ss_pred hCCCCEEEEEEcHHHHH
Confidence 77788999999999774
No 451
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=1.5e-05 Score=74.80 Aligned_cols=110 Identities=21% Similarity=0.343 Sum_probs=64.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhh----------h----------hccc---------
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM----------S----------KLAG--------- 284 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~----------~----------~~~g--------- 284 (590)
++.+.++..+.|.||+|+|||||++++++..... -+.+++.++. . .+.+
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 3557889999999999999999999999875321 1222221110 0 0000
Q ss_pred --hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC
Q 007764 285 --ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (590)
Q Consensus 285 --~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~ 355 (590)
...++.+-.+..+....|.++++||-..- ++......+.+++..+.......++.+|+.++
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~----------LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSA----------LDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 01234455566777788999999995432 33334455555555554432234444566543
No 452
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.97 E-value=2.3e-06 Score=95.98 Aligned_cols=46 Identities=30% Similarity=0.401 Sum_probs=36.3
Q ss_pred cccccccchhhhcccceeecccCChhhhhhcCCCC-CceeEEECCCCCChhHHHHHHHHHh
Q 007764 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP-SKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 480 ~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~-~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
|.+|.|++.++..|.-... .| .+|+||.||+|||||++|++|+..+
T Consensus 3 f~~ivGq~~~~~al~~~av--------------~~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAV--------------DPRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred cchhcChHHHHHHHHHHhh--------------CCCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 5678888888876654322 12 2579999999999999999999987
No 453
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.97 E-value=3.6e-05 Score=76.04 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=92.9
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE------EEEech
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF------FCINGP 276 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~------~~v~~~ 276 (590)
.+-.++++.+.++....+.++...+ .-.+.|+|||||+|||+...+.|..+..+. ...+.+
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 4456778888888888888775442 122899999999999999999999876531 112221
Q ss_pred hhhhhccchhHHHHHHHHHHHHh-------cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEe
Q 007764 277 EIMSKLAGESESNLRKAFEEAEK-------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~a~~-------~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~ 349 (590)
+-.+ .+ .....-..|+..+. ..+.++++||.|++..+ ..++|......+..+ +.+..
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-----------AQnALRRviek~t~n--~rF~i 166 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-----------AQNALRRVIEKYTAN--TRFAT 166 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHH-----------HHHHHHHHHHHhccc--eEEEE
Confidence 1111 11 11122233444432 25678999999987533 223444444444443 44445
Q ss_pred ecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhc
Q 007764 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (590)
Q Consensus 350 ~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~ 390 (590)
.+|.+..+.|+++. |+. .+.+.+.+.......+..++.
T Consensus 167 i~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 167 ISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred eccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHh
Confidence 78999999988876 552 234445554444455554443
No 454
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=97.97 E-value=0.00012 Score=67.29 Aligned_cols=134 Identities=22% Similarity=0.319 Sum_probs=90.6
Q ss_pred CCcEEEECHHHHHhcCCCC---CCEEEEecc-CCceEEEEEEcCCCCCCCeEEeCHHHHhhccccCCCeEEEEEccccCC
Q 007764 40 DNSVVVLHPDTMEKLQFFR---GDTILIKGK-KRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKY 115 (590)
Q Consensus 40 ~~~~v~~~~~~~~~l~~~~---g~~v~i~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~i~~~~~~~~ 115 (590)
..++|.|.|++|++|.-.. -=.-+|++. ..+.+.|-|.. -.-+.|.|-|+.-+.+++++..|+.|.|+. ..+|.
T Consensus 24 ~gdKiiLP~s~L~~L~~~~~~~P~~F~i~n~~~~~~th~GVlE-FsA~eG~i~lP~wmm~~L~l~~g~~V~v~~-~~LPk 101 (176)
T PF03152_consen 24 YGDKIILPPSALDELSRLNIPYPMLFEISNPDNGKRTHCGVLE-FSAEEGTIYLPPWMMQNLGLQEGDIVRVEY-VSLPK 101 (176)
T ss_dssp CTTEEEE-HHHHHHHHHTT--SS-EEEEEETTTTEEEEEEEEE-E--CTTEEEE-CHHHHHHT--TTEEEEEEE-EE---
T ss_pred CCCeEEcCHHHHHHHHhccCCCCEEEEEecCCCCcEEEEEEEE-eEcCCCeEEeCccHHhhcCCCCCCEEEEEE-eECCC
Confidence 3568999999998886221 124556655 34456666653 122468999999999999999999999996 57899
Q ss_pred CceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEEEeCCCCe
Q 007764 116 GKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEY 178 (590)
Q Consensus 116 a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ 178 (590)
++-|.+.|.+.....+ .-+...|..++ ..+..++.|+++.+..++..++|.|++++|.+.
T Consensus 102 gt~vkLqP~~~~F~~i--~n~KavLE~~L-r~ystLT~Gd~I~i~~~~~~y~l~V~e~kP~~a 161 (176)
T PF03152_consen 102 GTFVKLQPQSSDFLDI--SNPKAVLERAL-RNYSTLTKGDTISIEYNNKTYELDVVEVKPENA 161 (176)
T ss_dssp -SEEEEEESCHHHHCS--S-HHHHHHHHH-CC-SEEETTSEEEEECTTEEEEEEEEEECSSSC
T ss_pred CCEEEEeECCCccccc--cchHHHHHhhc-ccCceeecCCEEEEEeCCEEEEEEEEEEcCCCE
Confidence 9999999986532222 23455666666 346679999999999888899999999999873
No 455
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.96 E-value=6e-05 Score=69.39 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++++.++..+++.||+|||||||++.+|+..
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 4677899999999999999999999999864
No 456
>PRK05642 DNA replication initiation factor; Validated
Probab=97.95 E-value=1.9e-05 Score=77.52 Aligned_cols=62 Identities=26% Similarity=0.354 Sum_probs=45.3
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
..++|+||+|||||.|+++++.+. +...+.+...+++.. ..++.+..+.. .+|++|+++.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~ 110 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIA 110 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhc
Confidence 568999999999999999999765 456777777776542 12344444443 489999998765
No 457
>PRK08118 topology modulation protein; Reviewed
Probab=97.95 E-value=1.9e-05 Score=73.22 Aligned_cols=54 Identities=15% Similarity=0.283 Sum_probs=37.0
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHH
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~A 570 (590)
.+++.|||||||||||+.|+..++.+++.++.--....|...+...+..+.+.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~ 56 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNEL 56 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHH
Confidence 589999999999999999999999998877632111123444444444444443
No 458
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.95 E-value=0.00012 Score=65.38 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
.....+++.|+||+||||++.-++..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3456899999999999999999998763
No 459
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.94 E-value=3.8e-06 Score=90.79 Aligned_cols=46 Identities=35% Similarity=0.661 Sum_probs=34.5
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
.++++-|+..+++.+.-. ...+.+++|+|||||||||+|+.++..+
T Consensus 190 d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 567777777766544332 2344679999999999999999999755
No 460
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=1.8e-05 Score=85.02 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=51.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhhccchH---HHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE---ANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~~~~vGese---~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
..++|||++|||||.|+++++.++ +..++.+.+.+++..++..-. ..+.+..++.+ ...+|++||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCEEEEecccccc
Confidence 459999999999999999999865 357788888888877654322 22333333333 34699999999876
No 461
>PRK06620 hypothetical protein; Validated
Probab=97.93 E-value=1.1e-05 Score=78.02 Aligned_cols=29 Identities=38% Similarity=0.466 Sum_probs=25.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFI 544 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i 544 (590)
..++||||||||||+|+++++...+..++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~ 73 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII 73 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc
Confidence 57999999999999999999988775443
No 462
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.93 E-value=1.1e-05 Score=75.84 Aligned_cols=68 Identities=24% Similarity=0.448 Sum_probs=44.3
Q ss_pred eeEEECCCCCChhHHHHHHHHHh-C----CcEEEEeccchhhhhccchHHHHHHHHHHHhh-CCC---eEEEEccccccc
Q 007764 517 GVLFYGPPGCGKTLLAKAIANEC-Q----ANFISVKGPELLTMWFGESEANVREIFDKARQ-SAP---CVLFFDELDSIA 587 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~-~----~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~-~~p---~vlf~DEid~l~ 587 (590)
+++|.|||||||||-+.+||.++ | -..+.++.++--+- +.-++--+.|..-+- -|| .||++||+||+.
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 69999999999999999999987 2 12455555542110 111232355554432 233 499999999975
No 463
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.91 E-value=4.4e-05 Score=70.74 Aligned_cols=77 Identities=27% Similarity=0.389 Sum_probs=49.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEec----------hhhh-----hh----ccc--hhHHHHHH
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCING----------PEIM-----SK----LAG--ESESNLRK 292 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~----------~~l~-----~~----~~g--~~~~~~~~ 292 (590)
++.+.+++.+.|.||+|+|||||++.+++.+... -+.+++ ..+. .. ... ...++.+-
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 3567889999999999999999999999985321 011111 0000 00 001 12234455
Q ss_pred HHHHHHhcCCeEEEEccccc
Q 007764 293 AFEEAEKNAPSIIFIDEIDS 312 (590)
Q Consensus 293 ~f~~a~~~~p~iL~iDEid~ 312 (590)
.+..+....|.++++||-..
T Consensus 101 ~laral~~~p~~lllDEPt~ 120 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHHHHcCCCEEEEECCcc
Confidence 56677778899999999543
No 464
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.91 E-value=2.4e-05 Score=80.57 Aligned_cols=76 Identities=24% Similarity=0.418 Sum_probs=48.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCc------EEEEeccc---------------hhhhhccchHHHHH---HHHHH
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGPE---------------LLTMWFGESEANVR---EIFDK 569 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~------~i~v~~~e---------------l~~~~vGese~~ir---~~f~~ 569 (590)
.+...+++||||||||||++.+++....+ |+.+.+-- +.+.+-...+..++ .++..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 34459999999999999999999877542 33333221 22333333344444 45555
Q ss_pred Hh----hCCCeEEEEccccccccc
Q 007764 570 AR----QSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 570 Ar----~~~p~vlf~DEid~l~~~ 589 (590)
|+ .....+||+|||.+++.+
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHHH
Confidence 53 345679999999988753
No 465
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.90 E-value=1.5e-05 Score=77.95 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=25.1
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.+.+++-+.+.||||||||||.|++++.+.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344455599999999999999999999874
No 466
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=2.9e-05 Score=72.57 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=26.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.++.+.-.-|.||+||||||++|++-+..
T Consensus 27 ~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 27 NLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 3567788889999999999999999997653
No 467
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.90 E-value=3.8e-06 Score=86.34 Aligned_cols=46 Identities=30% Similarity=0.438 Sum_probs=36.6
Q ss_pred cccccccchhhhcccceeecccCChhhhhhcCCCC-CceeEEECCCCCChhHHHHHHHHHh
Q 007764 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP-SKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 480 ~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~-~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
|..|.|++++|..|.-... .| .+|++|.|+||+|||||++++++..
T Consensus 3 f~~ivgq~~~~~al~~~~~--------------~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVI--------------DPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhc--------------CCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 5678899999887644422 23 4679999999999999999999877
No 468
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.89 E-value=7.1e-05 Score=80.97 Aligned_cols=146 Identities=25% Similarity=0.316 Sum_probs=85.5
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcc
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLA 283 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~ 283 (590)
+.++.|.+...+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 345677777777776655421 1335689999999999999999997764 45799999976532211
Q ss_pred chhHHHHHHHHHH---------------HHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--------
Q 007764 284 GESESNLRKAFEE---------------AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 340 (590)
Q Consensus 284 g~~~~~~~~~f~~---------------a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 340 (590)
. ..+|.. ........|||||++.+.. .+...|+..+..-.
T Consensus 207 ~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~ 269 (445)
T TIGR02915 207 E------SELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL-----------NLQAKLLRFLQERVIERLGGRE 269 (445)
T ss_pred H------HHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH-----------HHHHHHHHHHhhCeEEeCCCCc
Confidence 0 111110 1112346899999998753 23344555554211
Q ss_pred -cCCeEEEEeecCCC-------CCCchhhhccCCCceEEEecCCCHHHHHH
Q 007764 341 -SRAHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (590)
Q Consensus 341 -~~~~v~vI~~tn~~-------~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 383 (590)
...++.+|++|+.. ..+.+.|.. |+ ..+.+..|...+|.+
T Consensus 270 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 270 EIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDG 317 (445)
T ss_pred eeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchh
Confidence 11256788888764 122222221 33 235566777777754
No 469
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.88 E-value=8.4e-05 Score=79.81 Aligned_cols=79 Identities=29% Similarity=0.517 Sum_probs=57.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc------cch--------hHHHHHHHHHHHHhc
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL------AGE--------SESNLRKAFEEAEKN 300 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~------~g~--------~~~~~~~~f~~a~~~ 300 (590)
|+.++.-++|+|+||+|||+|+..++... +..++++++.+..... .+. .+..+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67889999999999999999999998765 5677888775533221 110 112345566666677
Q ss_pred CCeEEEEcccccccCC
Q 007764 301 APSIIFIDEIDSIAPK 316 (590)
Q Consensus 301 ~p~iL~iDEid~l~~~ 316 (590)
.|.+++||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988654
No 470
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.88 E-value=1.2e-05 Score=70.15 Aligned_cols=31 Identities=39% Similarity=0.671 Sum_probs=28.0
Q ss_pred eEEECCCCCChhHHHHHHHHHhCCcEEEEec
Q 007764 518 VLFYGPPGCGKTLLAKAIANECQANFISVKG 548 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~~~~~i~v~~ 548 (590)
+++.|||||||||+|+.||..+++.++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988876655
No 471
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.87 E-value=4.7e-05 Score=70.87 Aligned_cols=42 Identities=21% Similarity=0.413 Sum_probs=33.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vG 557 (590)
++..++|+|||||||||+|+.||..++..|+.. .+++....|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~~g 44 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEARAG 44 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 456799999999999999999999999988854 344433333
No 472
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.87 E-value=6.6e-05 Score=71.47 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=27.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.+++.+.|.||+|+|||||++.|++..
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999999999987
No 473
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.86 E-value=4e-05 Score=77.74 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=27.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.++.-+.|.||+|+||||++++|++...
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4567888999999999999999999998763
No 474
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.86 E-value=2.4e-05 Score=76.10 Aligned_cols=69 Identities=25% Similarity=0.340 Sum_probs=55.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
...+-.++||+|||||+..|.||..+|..++.+++++.++ -+.+.++|.=+-+.. +.+.|||++.|-..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl~~~ 99 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRLSEE 99 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhhhHH
Confidence 3456789999999999999999999999999999988654 567888888776654 69999999998654
No 475
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.86 E-value=3.7e-05 Score=72.24 Aligned_cols=59 Identities=27% Similarity=0.494 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEechhh
Q 007764 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEI 278 (590)
Q Consensus 210 i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~---~~~v~~~~l 278 (590)
+.|-+++++++...+. .... ..+..++|+|++|+|||++++.+...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQS---------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHc---------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788999999988885 2222 446789999999999999999887765433 666665544
No 476
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.85 E-value=6.8e-05 Score=73.62 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=66.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechhhhh--------------------hc------
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEIMS--------------------KL------ 282 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---------~~~~~~v~~~~l~~--------------------~~------ 282 (590)
|+.++.-+.|+||||||||+++..++... +...++++..+-.. ..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 68889999999999999999999997542 24566776543110 00
Q ss_pred -cchhHHHHHHHHHHHHhc-CCeEEEEcccccccCCCCCCch--hHHHHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 283 -AGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHG--EVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 283 -~g~~~~~~~~~f~~a~~~-~p~iL~iDEid~l~~~~~~~~~--~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
..+....+..+-...... .+.+++||-+.++......... ....+.+.++...+..+....++.++.+.+
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 001111122222223344 7889999999987532111111 122234455566665555555666665543
No 477
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.85 E-value=7.8e-05 Score=77.86 Aligned_cols=79 Identities=29% Similarity=0.503 Sum_probs=56.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc------cch--------hHHHHHHHHHHHHhc
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL------AGE--------SESNLRKAFEEAEKN 300 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~------~g~--------~~~~~~~~f~~a~~~ 300 (590)
|+.++.-++|+|+||+|||+|+..++... +..++++++.+-.... .+. .+..+..+++.....
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 57889999999999999999999988764 3467777765432211 110 122345566666677
Q ss_pred CCeEEEEcccccccCC
Q 007764 301 APSIIFIDEIDSIAPK 316 (590)
Q Consensus 301 ~p~iL~iDEid~l~~~ 316 (590)
.|.+++||++..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999988643
No 478
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.85 E-value=4.7e-05 Score=72.85 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=43.4
Q ss_pred CCCCC-ceeEEECCCCCChhHHHHHHHHHh-----CCc---------------EEEEeccchhhhhccchHHHHHHHHHH
Q 007764 511 GMSPS-KGVLFYGPPGCGKTLLAKAIANEC-----QAN---------------FISVKGPELLTMWFGESEANVREIFDK 569 (590)
Q Consensus 511 ~~~~~-~gvLL~GppGtGKTtLAkalA~~~-----~~~---------------~i~v~~~el~~~~vGese~~ir~~f~~ 569 (590)
.+.++ +.++|+||||+|||||.|.++... ++. +-.+...+.+..+++.-....+++..-
T Consensus 23 ~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i 102 (200)
T cd03280 23 QLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARI 102 (200)
T ss_pred EECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHH
Confidence 44555 359999999999999999998322 211 111222223333333333333444333
Q ss_pred Hh-hCCCeEEEEccccc
Q 007764 570 AR-QSAPCVLFFDELDS 585 (590)
Q Consensus 570 Ar-~~~p~vlf~DEid~ 585 (590)
++ ...|.++++||..+
T Consensus 103 ~~~~~~p~llllDEp~~ 119 (200)
T cd03280 103 LQHADPDSLVLLDELGS 119 (200)
T ss_pred HHhCCCCcEEEEcCCCC
Confidence 32 35788999999864
No 479
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.85 E-value=3.8e-05 Score=74.54 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.++..+.|.||+|+|||||+++|++.+
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3557889999999999999999999999875
No 480
>PRK07261 topology modulation protein; Provisional
Probab=97.84 E-value=3.9e-05 Score=71.41 Aligned_cols=43 Identities=16% Similarity=0.367 Sum_probs=32.5
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccch
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES 559 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGes 559 (590)
.++++|+|||||||||+.|+..++.+++..+.-.....|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCC
Confidence 4789999999999999999999998887765433333343333
No 481
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.84 E-value=7.9e-05 Score=77.43 Aligned_cols=141 Identities=22% Similarity=0.382 Sum_probs=74.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC-eEEEEechhhhhhccch------hHHHHHHHHHHHHhcCCeEEEEcccc
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANETGA-FFFCINGPEIMSKLAGE------SESNLRKAFEEAEKNAPSIIFIDEID 311 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~~~-~~~~v~~~~l~~~~~g~------~~~~~~~~f~~a~~~~p~iL~iDEid 311 (590)
..+++|+.|+||.|+|||+|.-.....+.. .-..+.-.+++...... ...-+..+.+.. .....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l-~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL-AKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH-HhcCCEEEEeeee
Confidence 467899999999999999999999888764 12222222222211110 111223333333 2334599999987
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC
Q 007764 312 SIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (590)
Q Consensus 312 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~ 391 (590)
-- +-.+..++..|+..+ - ..++++|+|+|++ +..|-. +.+.++... --..+|+.++.-
T Consensus 138 V~--------DiaDAmil~rLf~~l---~-~~gvvlVaTSN~~---P~~Ly~-~gl~r~~Fl------p~I~~l~~~~~v 195 (362)
T PF03969_consen 138 VT--------DIADAMILKRLFEAL---F-KRGVVLVATSNRP---PEDLYK-NGLQRERFL------PFIDLLKRRCDV 195 (362)
T ss_pred cc--------chhHHHHHHHHHHHH---H-HCCCEEEecCCCC---hHHHcC-CcccHHHHH------HHHHHHHhceEE
Confidence 32 112233444444433 1 2378888999975 222221 122221111 114556666665
Q ss_pred CCCCCccCHHH
Q 007764 392 MKLSDDVDLER 402 (590)
Q Consensus 392 ~~~~~~~~l~~ 402 (590)
+.+....|.+.
T Consensus 196 v~ld~~~DyR~ 206 (362)
T PF03969_consen 196 VELDGGVDYRR 206 (362)
T ss_pred EEecCCCchhh
Confidence 55655555544
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.84 E-value=3.7e-05 Score=71.77 Aligned_cols=75 Identities=20% Similarity=0.175 Sum_probs=49.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhCC--cEEEEeccch--hhhhccch-HHHHHHHHHHHhhCCCeEEEEccccc
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL--LTMWFGES-EANVREIFDKARQSAPCVLFFDELDS 585 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--~~i~v~~~el--~~~~vGes-e~~ir~~f~~Ar~~~p~vlf~DEid~ 585 (590)
.+.++.-+.|.||||+|||||.+.|++.... --|.+++..+ +.....-| -+.-|-.+.+|-...|.++++||--+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 4567778999999999999999999987632 1344444221 11111112 12345556667778899999999643
No 483
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.83 E-value=3.4e-05 Score=71.27 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=51.6
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhCC--cEEEEeccch--------hhhhccc----h-HHHHHHHHHHHhhCC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPEL--------LTMWFGE----S-EANVREIFDKARQSA 574 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--~~i~v~~~el--------~~~~vGe----s-e~~ir~~f~~Ar~~~ 574 (590)
+.+.++..+.|.||||||||||.++|++.... --+.+++.++ ....+|. | -+.-|-.+.+|-...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 45667888999999999999999999988632 2344444332 1112222 1 123456677788889
Q ss_pred CeEEEEccccc
Q 007764 575 PCVLFFDELDS 585 (590)
Q Consensus 575 p~vlf~DEid~ 585 (590)
|.++++||-.+
T Consensus 101 p~illlDEP~~ 111 (163)
T cd03216 101 ARLLILDEPTA 111 (163)
T ss_pred CCEEEEECCCc
Confidence 99999999643
No 484
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.83 E-value=3.3e-05 Score=73.74 Aligned_cols=68 Identities=22% Similarity=0.387 Sum_probs=45.7
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCC----cEEEEecc-chhhh---------hccchHHHHHHHHHHHhhCCCeEEEEcc
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQA----NFISVKGP-ELLTM---------WFGESEANVREIFDKARQSAPCVLFFDE 582 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~----~~i~v~~~-el~~~---------~vGese~~ir~~f~~Ar~~~p~vlf~DE 582 (590)
-+++.||+||||||++++++..... ..+.+..+ |+... -+|.......+.++.+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4899999999999999999887742 23333222 33211 1233333456667777777899999999
Q ss_pred cc
Q 007764 583 LD 584 (590)
Q Consensus 583 id 584 (590)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 84
No 485
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=1.9e-05 Score=82.39 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=41.4
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
.-.++++.|++.+++.|.+.+.. + +.+..+||+||+|+||+++|.++|..+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999998877542 1 234469999999999999999999877
No 486
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.82 E-value=8.6e-05 Score=84.09 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=73.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------EEEEechhhhh-h--ccchhHHHHHHHHHHHHhcCCeEEEEc
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFCINGPEIMS-K--LAGESESNLRKAFEEAEKNAPSIIFID 308 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~~~~-------~~~v~~~~l~~-~--~~g~~~~~~~~~f~~a~~~~p~iL~iD 308 (590)
+....+|||+|+||||||++|+++++..... +..+++..... . ..|++....+ .+..| ...+++||
T Consensus 489 iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~G-aLvlA---dgGtL~ID 564 (915)
T PTZ00111 489 FRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPG-AVVLA---NGGVCCID 564 (915)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCC-cEEEc---CCCeEEec
Confidence 3455689999999999999999998865422 22222211110 0 0011000000 01111 23599999
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHHhhhccc-----------cCCeEEEEeecCCCC-------------CCchhhhcc
Q 007764 309 EIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-------------SIDPALRRF 364 (590)
Q Consensus 309 Eid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~-------------~ld~al~r~ 364 (590)
|++.+.+ .....|+..|.... -...+.|||++|+.. .+++++..
T Consensus 565 Eidkms~-----------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS- 632 (915)
T PTZ00111 565 ELDKCHN-----------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT- 632 (915)
T ss_pred chhhCCH-----------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh-
Confidence 9998742 22345666664321 124678999999852 35677877
Q ss_pred CCCceEE-EecCCCHHHHHHH
Q 007764 365 GRFDREI-DIGVPDEVGRLEV 384 (590)
Q Consensus 365 gRf~~~i-~i~~P~~~~r~~I 384 (590)
|||... .++.|+.+.-..|
T Consensus 633 -RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 633 -RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred -hhcEEEEecCCCChHHHHHH
Confidence 997764 5667776654444
No 487
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.82 E-value=3.4e-05 Score=69.67 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=48.3
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhCCc--EEEEeccchhhhhcc-chH-HHHHHHHHHHhhCCCeEEEEccccc
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLTMWFG-ESE-ANVREIFDKARQSAPCVLFFDELDS 585 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~--~i~v~~~el~~~~vG-ese-~~ir~~f~~Ar~~~p~vlf~DEid~ 585 (590)
+.+.++..+.+.||||+|||||+++|++..... -|.+++...+. |+- -|. +.-|-.+.+|-...|.++++||-.+
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~-~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIG-YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEE-EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 456677889999999999999999999887421 23333321111 111 121 2233445667777889999999653
No 488
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=4.9e-05 Score=79.30 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|.||+|||||||+++|++..
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3556789999999999999999999999875
No 489
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.82 E-value=2.4e-05 Score=75.84 Aligned_cols=71 Identities=28% Similarity=0.497 Sum_probs=50.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhhccchHH-HHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~~~~vGese~-~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
..+.||||+|+|||.|.++++.+. +...+.+.+.++...|...-.. .+.++.+.-+. ..+|+||+++.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~--~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRS--ADLLIIDDIQFLAG 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCT--SSEEEEETGGGGTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhc--CCEEEEecchhhcC
Confidence 358999999999999999999875 4568888888887665433221 22333333343 35999999998864
No 490
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.81 E-value=0.00033 Score=68.53 Aligned_cols=39 Identities=41% Similarity=0.651 Sum_probs=32.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhh
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEI 278 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~--~~~~v~~~~l 278 (590)
-.++.+|+.|+||+|||.+|-.+++.+|. +|..+.++++
T Consensus 64 iaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI 104 (454)
T KOG2680|consen 64 IAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEI 104 (454)
T ss_pred ccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeeccee
Confidence 35789999999999999999999998874 5666666554
No 491
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.81 E-value=5.5e-05 Score=67.95 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=38.8
Q ss_pred eEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccc--------------hHHHHHHHHHHHhhCCCeEEEEc
Q 007764 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE--------------SEANVREIFDKARQSAPCVLFFD 581 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGe--------------se~~ir~~f~~Ar~~~p~vlf~D 581 (590)
+++.|||||||||+|+.++...+ +..++..++.....++ ..+.+.+..+.+.....++|+ |
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv-d 76 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV-D 76 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE-E
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee-c
Confidence 68999999999999999999998 4445555554433331 112344555555556656544 5
No 492
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.80 E-value=5.1e-05 Score=72.27 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.+++.+.+.||+|||||+|.|.+.+.+
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 456789999999999999999999998765
No 493
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.80 E-value=0.0001 Score=70.36 Aligned_cols=77 Identities=27% Similarity=0.407 Sum_probs=47.5
Q ss_pred hhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeE-------------EEEechhhhh----hccchhHHHHHH
Q 007764 235 KSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFF-------------FCINGPEIMS----KLAGESESNLRK 292 (590)
Q Consensus 235 ~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-----~~~~-------------~~v~~~~l~~----~~~g~~~~~~~~ 292 (590)
.++.+..++.++|.||+|+||||+++.++... |.++ ......+-.. .+..+. .++..
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~-~~~~~ 96 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAEL-RRLKE 96 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHH-HHHHH
Confidence 44556677899999999999999999998643 3221 1111111111 111111 34566
Q ss_pred HHHHHHhcCCeEEEEccccc
Q 007764 293 AFEEAEKNAPSIIFIDEIDS 312 (590)
Q Consensus 293 ~f~~a~~~~p~iL~iDEid~ 312 (590)
+++.+....|.++++||.-.
T Consensus 97 iL~~~~~~~p~llllDEp~~ 116 (199)
T cd03283 97 IVEKAKKGEPVLFLLDEIFK 116 (199)
T ss_pred HHHhccCCCCeEEEEecccC
Confidence 66666545789999999643
No 494
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.79 E-value=0.00022 Score=70.04 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=31.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCING 275 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~ 275 (590)
|++.+..++++|+||||||+++..++... +...++++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67889999999999999999999986542 556666654
No 495
>PRK09354 recA recombinase A; Provisional
Probab=97.79 E-value=0.00014 Score=74.56 Aligned_cols=114 Identities=26% Similarity=0.362 Sum_probs=67.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---hCCeEEEEechhhhhh----------------ccchhHHHHHHHHHHHH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANE---TGAFFFCINGPEIMSK----------------LAGESESNLRKAFEEAE 298 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~---~~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 298 (590)
|++.+.-++|+||||||||+|+..++.. .+...++++..+-... .....++.+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 5788899999999999999999887644 3566677765432110 01112223332223344
Q ss_pred hcCCeEEEEcccccccCCCC--CC----chhHHHHHHHHHHHhhhccccCCeEEEEeec
Q 007764 299 KNAPSIIFIDEIDSIAPKRE--KT----HGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (590)
Q Consensus 299 ~~~p~iL~iDEid~l~~~~~--~~----~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~t 351 (590)
...+.+++||-+.++.+..+ .. ......+...+.+..+.......++.+|.+.
T Consensus 136 s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 136 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred cCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 56789999999999886321 11 1123345555544444444455566666553
No 496
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.79 E-value=0.00012 Score=71.36 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=66.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---C------CeEEEEechhhhh-----h---ccc---------------h
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---G------AFFFCINGPEIMS-----K---LAG---------------E 285 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~------~~~~~v~~~~l~~-----~---~~g---------------~ 285 (590)
|+..+.-+.|+||||+|||+++..++... + ..++++++.+-.. . ..+ .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 67889999999999999999999997653 2 4556666643210 0 000 0
Q ss_pred hHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCc--hhHHHHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 286 SESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH--GEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 286 ~~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~--~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
....+...+... ....+.+++||-+..+........ .....+.+.+++..+..+....++.+|.+.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 111222222222 245678999999998865422111 1122234455556566555555666665543
No 497
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.79 E-value=0.00014 Score=70.56 Aligned_cols=39 Identities=44% Similarity=0.589 Sum_probs=32.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGP 276 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~ 276 (590)
|+..+.-++|+|+||||||+++..+|... +..+++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 67888999999999999999999998764 4566666553
No 498
>PHA00729 NTP-binding motif containing protein
Probab=97.79 E-value=4.1e-05 Score=73.54 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.6
Q ss_pred eeEEECCCCCChhHHHHHHHHHhC
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.++++|+||||||+||.+||..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 499
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.78 E-value=7.9e-05 Score=63.57 Aligned_cols=23 Identities=43% Similarity=0.875 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhC
Q 007764 245 ILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 245 vLL~GppGtGKTtla~~la~~~~ 267 (590)
|.|+||||+|||++++.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988764
No 500
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=5e-05 Score=78.99 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|.||+|||||||++.|++..
T Consensus 26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3556889999999999999999999999875
Done!