Query 007764
Match_columns 590
No_of_seqs 537 out of 4106
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 09:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1E-106 4E-111 906.1 51.4 580 10-589 5-585 (806)
2 1ypw_A Transitional endoplasmi 100.0 4.9E-85 1.7E-89 745.3 45.3 577 12-588 7-584 (806)
3 3hu3_A Transitional endoplasmi 100.0 1.8E-68 6.2E-73 574.8 46.1 480 9-488 4-484 (489)
4 4b4t_J 26S protease regulatory 100.0 4.2E-47 1.5E-51 392.2 27.3 248 200-464 140-390 (405)
5 4b4t_I 26S protease regulatory 100.0 7.4E-46 2.5E-50 383.3 27.3 249 201-466 175-426 (437)
6 4b4t_M 26S protease regulatory 100.0 5.8E-45 2E-49 382.3 26.6 251 201-468 174-427 (434)
7 4b4t_L 26S protease subunit RP 100.0 4.5E-45 1.6E-49 383.4 24.9 249 201-466 174-425 (437)
8 4b4t_H 26S protease regulatory 100.0 1.2E-44 4.1E-49 377.9 27.4 246 201-463 202-450 (467)
9 4b4t_K 26S protease regulatory 100.0 8.6E-44 2.9E-48 373.2 27.4 245 201-462 165-413 (428)
10 3cf2_A TER ATPase, transitiona 100.0 3E-41 1E-45 377.8 15.3 268 201-468 470-748 (806)
11 3qwz_A Transitional endoplasmi 100.0 8.1E-38 2.8E-42 294.3 19.9 201 12-212 10-211 (211)
12 2x8a_A Nuclear valosin-contain 100.0 8.4E-37 2.9E-41 305.8 24.1 262 202-469 4-270 (274)
13 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.6E-35 1.9E-39 299.7 24.9 263 202-467 6-303 (322)
14 3tiw_A Transitional endoplasmi 100.0 3.3E-35 1.1E-39 271.7 20.4 181 12-192 7-187 (187)
15 3cf0_A Transitional endoplasmi 100.0 4.8E-35 1.7E-39 297.8 22.8 267 201-467 8-285 (301)
16 3eie_A Vacuolar protein sortin 100.0 5.8E-34 2E-38 292.7 21.6 267 201-470 11-305 (322)
17 2qp9_X Vacuolar protein sortin 100.0 1.9E-33 6.6E-38 292.2 22.9 265 202-469 45-337 (355)
18 2ce7_A Cell division protein F 100.0 2.3E-33 7.8E-38 299.2 21.7 227 203-430 11-240 (476)
19 2zan_A Vacuolar protein sortin 100.0 1.8E-32 6E-37 293.2 19.1 264 201-467 127-425 (444)
20 3h4m_A Proteasome-activating n 100.0 4.4E-31 1.5E-35 266.5 24.7 231 201-431 10-243 (285)
21 1lv7_A FTSH; alpha/beta domain 100.0 2E-30 6.8E-35 257.7 26.5 243 202-462 6-251 (257)
22 2dhr_A FTSH; AAA+ protein, hex 100.0 1.2E-31 4.1E-36 287.5 18.3 227 203-430 26-255 (499)
23 1r6b_X CLPA protein; AAA+, N-t 100.0 1.1E-30 3.6E-35 298.7 19.9 341 204-589 182-572 (758)
24 4b4t_J 26S protease regulatory 100.0 1E-31 3.5E-36 277.5 10.1 127 463-589 130-256 (405)
25 1ixz_A ATP-dependent metallopr 100.0 3.5E-29 1.2E-33 248.3 26.6 227 202-429 10-239 (254)
26 3b9p_A CG5977-PA, isoform A; A 100.0 1.7E-29 5.9E-34 256.4 20.6 260 202-469 15-278 (297)
27 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.2E-29 7.6E-34 250.6 20.3 227 203-430 1-233 (262)
28 1ypw_A Transitional endoplasmi 100.0 4.1E-32 1.4E-36 309.5 0.4 231 202-432 471-704 (806)
29 3d8b_A Fidgetin-like protein 1 100.0 5.2E-29 1.8E-33 259.2 22.7 261 201-469 77-340 (357)
30 3pxi_A Negative regulator of g 100.0 3.6E-29 1.2E-33 285.6 21.2 340 204-589 176-594 (758)
31 1iy2_A ATP-dependent metallopr 100.0 7.5E-28 2.6E-32 241.9 27.5 226 203-429 35-263 (278)
32 4b4t_I 26S protease regulatory 100.0 8.6E-30 2.9E-34 263.5 9.7 119 471-589 172-290 (437)
33 3vfd_A Spastin; ATPase, microt 100.0 5.4E-28 1.9E-32 254.7 22.3 259 201-467 108-369 (389)
34 4b4t_L 26S protease subunit RP 100.0 3.1E-29 1.1E-33 263.2 10.0 124 465-588 165-288 (437)
35 4b4t_H 26S protease regulatory 100.0 3.3E-29 1.1E-33 261.7 9.9 118 472-589 200-317 (467)
36 2r62_A Cell division protease 100.0 9E-30 3.1E-34 254.5 4.4 249 202-468 5-258 (268)
37 4b4t_M 26S protease regulatory 100.0 3.8E-29 1.3E-33 262.3 8.7 120 470-589 170-289 (434)
38 1qvr_A CLPB protein; coiled co 100.0 4.2E-28 1.4E-32 279.7 17.1 197 204-424 166-390 (854)
39 4b4t_K 26S protease regulatory 99.9 2E-28 6.8E-33 256.8 9.5 119 471-589 162-280 (428)
40 1cz4_A VCP-like ATPase; double 99.9 1.2E-23 4E-28 195.2 18.5 160 29-195 7-178 (185)
41 3cmw_A Protein RECA, recombina 99.9 3.2E-25 1.1E-29 263.5 5.5 115 475-589 1014-1175(1706)
42 3t15_A Ribulose bisphosphate c 99.9 1.3E-23 4.6E-28 212.3 13.7 174 238-417 32-222 (293)
43 3cf0_A Transitional endoplasmi 99.9 2.6E-23 9E-28 211.1 7.1 121 468-588 2-122 (301)
44 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.1E-22 3.8E-27 208.2 9.1 116 472-588 3-119 (322)
45 2x8a_A Nuclear valosin-contain 99.9 1.1E-22 3.9E-27 203.1 7.6 115 474-588 3-117 (274)
46 3eie_A Vacuolar protein sortin 99.8 1.3E-21 4.4E-26 200.6 9.2 117 471-588 8-124 (322)
47 2c9o_A RUVB-like 1; hexameric 99.8 1.3E-22 4.5E-27 217.8 -2.5 201 203-421 32-262 (456)
48 2qp9_X Vacuolar protein sortin 99.8 5.5E-21 1.9E-25 198.4 8.5 115 473-588 43-157 (355)
49 4akg_A Glutathione S-transfera 99.8 3.9E-19 1.3E-23 220.3 20.9 322 240-584 1265-1677(2695)
50 2zan_A Vacuolar protein sortin 99.8 2.1E-20 7.3E-25 199.6 6.7 116 472-588 125-241 (444)
51 3syl_A Protein CBBX; photosynt 99.8 1.1E-18 3.9E-23 177.5 15.8 212 209-430 32-266 (309)
52 2ce7_A Cell division protein F 99.8 2E-19 6.8E-24 191.7 9.6 113 475-588 10-122 (476)
53 3h4m_A Proteasome-activating n 99.8 1.7E-19 5.7E-24 181.5 8.6 115 474-588 10-124 (285)
54 3hu3_A Transitional endoplasmi 99.8 2.5E-19 8.4E-24 192.6 7.7 112 477-588 200-311 (489)
55 3b9p_A CG5977-PA, isoform A; A 99.8 4.6E-19 1.6E-23 179.4 9.3 114 474-588 14-127 (297)
56 2qz4_A Paraplegin; AAA+, SPG7, 99.8 3.8E-19 1.3E-23 176.4 8.5 111 476-587 1-111 (262)
57 1lv7_A FTSH; alpha/beta domain 99.8 3.8E-19 1.3E-23 176.2 8.4 113 475-588 6-118 (257)
58 1wlf_A PEX1, peroxisome biogen 99.8 5.4E-18 1.8E-22 156.3 14.0 160 29-191 13-177 (179)
59 3d8b_A Fidgetin-like protein 1 99.8 6.8E-19 2.3E-23 182.9 8.0 114 474-588 77-190 (357)
60 1g41_A Heat shock protein HSLU 99.7 7.8E-19 2.7E-23 184.5 7.3 170 208-386 15-189 (444)
61 3vfd_A Spastin; ATPase, microt 99.7 2.7E-18 9.3E-23 180.6 9.2 117 471-588 105-221 (389)
62 3cmw_A Protein RECA, recombina 99.7 2.9E-17 1E-21 195.6 16.5 151 203-354 1015-1218(1706)
63 2r62_A Cell division protease 99.7 6.1E-19 2.1E-23 175.8 1.4 114 474-588 4-117 (268)
64 2dhr_A FTSH; AAA+ protein, hex 99.7 5.3E-18 1.8E-22 181.8 6.9 112 476-588 26-137 (499)
65 3m6a_A ATP-dependent protease 99.7 1.7E-17 5.9E-22 181.2 10.2 168 204-389 77-266 (543)
66 1d2n_A N-ethylmaleimide-sensit 99.7 2.3E-16 7.9E-21 157.5 16.4 194 207-410 32-229 (272)
67 1ofh_A ATP-dependent HSL prote 99.7 4.7E-16 1.6E-20 157.9 18.5 177 208-386 15-212 (310)
68 1ixz_A ATP-dependent metallopr 99.7 2E-17 7E-22 163.4 7.9 116 472-588 7-122 (254)
69 3uk6_A RUVB-like 2; hexameric 99.7 7.4E-16 2.5E-20 160.6 18.7 203 204-430 40-314 (368)
70 2c9o_A RUVB-like 1; hexameric 99.7 1.3E-17 4.5E-22 178.8 5.3 106 475-589 31-141 (456)
71 3pfi_A Holliday junction ATP-d 99.7 2.1E-15 7.3E-20 155.3 20.5 194 202-425 23-233 (338)
72 3t15_A Ribulose bisphosphate c 99.7 7.7E-17 2.6E-21 162.6 7.3 78 511-588 32-113 (293)
73 1jbk_A CLPB protein; beta barr 99.6 6.7E-16 2.3E-20 144.7 12.5 160 203-385 17-194 (195)
74 3hws_A ATP-dependent CLP prote 99.6 2E-15 6.9E-20 157.1 16.9 219 210-430 17-326 (363)
75 1iy2_A ATP-dependent metallopr 99.6 2.2E-16 7.4E-21 158.2 8.4 114 474-588 33-146 (278)
76 3cmu_A Protein RECA, recombina 99.6 3.6E-16 1.2E-20 188.0 9.0 129 458-588 655-824 (2050)
77 1hqc_A RUVB; extended AAA-ATPa 99.6 8.7E-15 3E-19 149.6 17.4 192 202-422 6-214 (324)
78 1l8q_A Chromosomal replication 99.6 2.4E-14 8.3E-19 146.5 19.6 194 204-423 7-212 (324)
79 3pxg_A Negative regulator of g 99.6 4.5E-15 1.5E-19 159.4 14.3 183 204-424 176-383 (468)
80 2z4s_A Chromosomal replication 99.6 4.2E-14 1.5E-18 150.5 20.1 199 203-426 100-313 (440)
81 2p65_A Hypothetical protein PF 99.6 5E-15 1.7E-19 138.2 10.3 152 204-377 18-187 (187)
82 3vkg_A Dynein heavy chain, cyt 99.6 1.8E-14 6E-19 179.7 17.7 324 241-584 1303-1714(3245)
83 3cmu_A Protein RECA, recombina 99.6 6.2E-14 2.1E-18 168.8 19.7 78 511-588 1423-1519(2050)
84 3u61_B DNA polymerase accessor 99.5 1.1E-13 3.8E-18 141.6 18.3 180 202-415 20-213 (324)
85 2v1u_A Cell division control p 99.5 2.1E-13 7.2E-18 142.5 19.4 204 206-428 17-258 (387)
86 3te6_A Regulatory protein SIR3 99.5 4.7E-14 1.6E-18 142.4 13.8 159 210-391 22-213 (318)
87 2chg_A Replication factor C sm 99.5 3.6E-13 1.2E-17 129.0 19.4 176 202-412 11-198 (226)
88 1sxj_A Activator 1 95 kDa subu 99.5 4.1E-14 1.4E-18 154.0 13.5 200 202-416 33-250 (516)
89 3bos_A Putative DNA replicatio 99.5 3.9E-13 1.3E-17 130.8 18.8 187 205-426 25-224 (242)
90 3pvs_A Replication-associated 99.5 2.1E-13 7.1E-18 145.1 17.1 184 202-424 20-220 (447)
91 4fcw_A Chaperone protein CLPB; 99.5 2.5E-13 8.5E-18 138.0 15.7 200 208-427 17-279 (311)
92 1um8_A ATP-dependent CLP prote 99.5 3.5E-13 1.2E-17 140.9 16.5 176 209-386 22-283 (376)
93 2qby_B CDC6 homolog 3, cell di 99.5 6.6E-13 2.2E-17 138.9 18.2 191 208-424 20-250 (384)
94 3syl_A Protein CBBX; photosynt 99.5 3.3E-14 1.1E-18 144.3 6.8 104 480-587 30-143 (309)
95 1njg_A DNA polymerase III subu 99.5 9.9E-13 3.4E-17 127.6 16.1 186 202-422 17-231 (250)
96 2qby_A CDC6 homolog 1, cell di 99.5 2.1E-12 7E-17 134.8 19.6 202 206-427 18-253 (386)
97 2r44_A Uncharacterized protein 99.5 7.3E-13 2.5E-17 135.9 15.7 153 206-391 25-200 (331)
98 1in4_A RUVB, holliday junction 99.4 5.1E-12 1.7E-16 129.7 20.3 195 202-426 19-230 (334)
99 1g8p_A Magnesium-chelatase 38 99.4 2.1E-12 7.1E-17 133.3 17.2 159 203-387 19-230 (350)
100 3hws_A ATP-dependent CLP prote 99.4 2.7E-14 9.1E-19 148.6 2.7 107 483-589 17-131 (363)
101 1r6b_X CLPA protein; AAA+, N-t 99.4 1.5E-12 5.2E-17 148.5 17.1 159 209-390 459-667 (758)
102 1fnn_A CDC6P, cell division co 99.4 6.3E-12 2.1E-16 131.5 19.9 199 207-428 16-256 (389)
103 2chq_A Replication factor C sm 99.4 1.1E-12 3.9E-17 133.3 13.8 181 202-413 11-199 (319)
104 1sxj_D Activator 1 41 kDa subu 99.4 2E-12 6.7E-17 133.6 15.3 179 202-415 31-232 (353)
105 3pxi_A Negative regulator of g 99.4 2.7E-12 9.3E-17 146.2 17.6 162 208-390 491-676 (758)
106 1sxj_B Activator 1 37 kDa subu 99.4 3.5E-12 1.2E-16 129.9 16.3 180 202-417 15-208 (323)
107 1iqp_A RFCS; clamp loader, ext 99.4 7.6E-12 2.6E-16 127.6 18.6 181 202-413 19-207 (327)
108 4akg_A Glutathione S-transfera 99.4 3.3E-12 1.1E-16 158.9 16.2 128 242-386 645-790 (2695)
109 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 7.8E-12 2.7E-16 134.2 14.9 152 209-389 23-196 (500)
110 1sxj_E Activator 1 40 kDa subu 99.3 1.3E-11 4.5E-16 127.6 15.5 181 202-415 8-234 (354)
111 1g41_A Heat shock protein HSLU 99.3 3.3E-13 1.1E-17 141.8 2.7 103 481-587 15-120 (444)
112 1jr3_A DNA polymerase III subu 99.3 3.9E-11 1.3E-15 124.8 17.3 185 203-422 11-224 (373)
113 1d2n_A N-ethylmaleimide-sensit 99.3 3.2E-12 1.1E-16 127.3 8.6 74 511-587 60-137 (272)
114 3m6a_A ATP-dependent protease 99.3 1.2E-12 4.2E-17 142.9 4.9 106 475-589 75-190 (543)
115 2bjv_A PSP operon transcriptio 99.3 1.6E-11 5.3E-16 121.8 11.6 148 205-380 3-181 (265)
116 1ofh_A ATP-dependent HSL prote 99.3 1.4E-12 4.8E-17 132.1 3.6 109 481-589 15-131 (310)
117 1um8_A ATP-dependent CLP prote 99.3 3.3E-12 1.1E-16 133.4 6.5 109 481-589 21-152 (376)
118 1qvr_A CLPB protein; coiled co 99.3 3E-11 1E-15 139.3 14.5 200 208-427 558-820 (854)
119 3co5_A Putative two-component 99.3 6.3E-12 2.2E-16 112.4 7.0 112 209-354 5-116 (143)
120 3n70_A Transport activator; si 99.2 1.1E-11 3.9E-16 111.0 8.4 112 209-354 2-116 (145)
121 1sxj_C Activator 1 40 kDa subu 99.2 3.1E-10 1.1E-14 116.7 18.8 175 202-412 19-206 (340)
122 3uk6_A RUVB-like 2; hexameric 99.2 6.6E-12 2.2E-16 130.6 5.5 75 476-558 39-115 (368)
123 1jbk_A CLPB protein; beta barr 99.2 2E-11 6.8E-16 113.8 8.3 97 478-587 19-128 (195)
124 1sxj_A Activator 1 95 kDa subu 99.2 3.5E-12 1.2E-16 138.8 1.8 112 477-588 35-162 (516)
125 2p65_A Hypothetical protein PF 99.2 2.6E-11 8.8E-16 112.7 7.4 96 479-587 20-128 (187)
126 1ojl_A Transcriptional regulat 99.2 8.3E-11 2.9E-15 118.9 10.2 146 208-381 2-178 (304)
127 1a5t_A Delta prime, HOLB; zinc 99.1 9.7E-10 3.3E-14 112.6 16.0 167 213-414 7-201 (334)
128 3f9v_A Minichromosome maintena 99.1 1E-10 3.4E-15 128.9 7.2 163 208-390 295-491 (595)
129 3ec2_A DNA replication protein 99.1 5.2E-10 1.8E-14 103.9 10.4 99 203-313 5-112 (180)
130 3pfi_A Holliday junction ATP-d 99.1 1.7E-10 6E-15 118.4 7.7 95 478-588 26-120 (338)
131 3te6_A Regulatory protein SIR3 99.0 1.5E-10 5.1E-15 116.8 6.5 75 513-587 43-145 (318)
132 1w5s_A Origin recognition comp 99.0 5.5E-09 1.9E-13 109.9 18.3 205 207-426 21-273 (412)
133 3pvs_A Replication-associated 99.0 2.6E-10 8.8E-15 121.2 7.6 92 478-589 23-121 (447)
134 3n70_A Transport activator; si 99.0 1.7E-10 5.7E-15 103.3 5.0 66 514-589 23-91 (145)
135 3co5_A Putative two-component 99.0 9E-11 3.1E-15 104.8 2.3 64 515-589 27-90 (143)
136 2gno_A DNA polymerase III, gam 99.0 4.1E-09 1.4E-13 106.2 14.3 142 212-389 1-152 (305)
137 4fcw_A Chaperone protein CLPB; 99.0 2.1E-10 7.2E-15 116.2 3.9 105 481-589 17-134 (311)
138 1l8q_A Chromosomal replication 98.9 8.1E-10 2.8E-14 112.7 7.0 74 514-588 36-112 (324)
139 3u61_B DNA polymerase accessor 98.9 8.6E-10 2.9E-14 112.5 6.8 91 478-587 23-118 (324)
140 3vkg_A Dynein heavy chain, cyt 98.9 6.4E-09 2.2E-13 130.5 15.1 128 242-386 604-750 (3245)
141 1tf7_A KAIC; homohexamer, hexa 98.9 3.4E-08 1.1E-12 107.5 19.0 76 511-586 277-383 (525)
142 3pxg_A Negative regulator of g 98.9 7.7E-10 2.6E-14 118.6 6.0 87 479-581 178-274 (468)
143 1hqc_A RUVB; extended AAA-ATPa 98.9 1.1E-09 3.7E-14 111.6 6.4 96 478-588 9-104 (324)
144 2kjq_A DNAA-related protein; s 98.9 1.6E-09 5.3E-14 97.4 6.4 100 241-368 35-140 (149)
145 3k1j_A LON protease, ATP-depen 98.9 1.1E-08 3.6E-13 113.3 14.1 52 201-267 34-85 (604)
146 2krk_A 26S protease regulatory 98.9 2.4E-09 8E-14 86.2 6.0 76 373-465 8-83 (86)
147 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.6E-09 5.6E-14 108.2 4.9 120 238-361 119-242 (331)
148 2z4s_A Chromosomal replication 98.8 2.6E-09 8.9E-14 113.5 6.5 74 515-588 130-208 (440)
149 1g8p_A Magnesium-chelatase 38 98.8 1.7E-09 5.9E-14 111.3 4.9 53 475-540 18-70 (350)
150 3kw6_A 26S protease regulatory 98.8 8.8E-09 3E-13 81.4 7.1 73 374-463 1-73 (78)
151 2bjv_A PSP operon transcriptio 98.8 1.2E-09 4.1E-14 108.1 2.1 97 479-589 4-115 (265)
152 2v1u_A Cell division control p 98.8 7.6E-09 2.6E-13 107.7 7.8 99 481-588 19-144 (387)
153 2chg_A Replication factor C sm 98.7 1.7E-08 5.7E-13 96.1 8.7 93 477-588 13-116 (226)
154 3ec2_A DNA replication protein 98.7 8.1E-09 2.8E-13 95.7 6.1 76 509-586 32-112 (180)
155 3vlf_B 26S protease regulatory 98.7 2.2E-08 7.7E-13 80.9 6.5 74 377-467 2-75 (88)
156 1sxj_D Activator 1 41 kDa subu 98.7 2.7E-08 9.3E-13 102.3 8.4 93 477-588 33-147 (353)
157 2w58_A DNAI, primosome compone 98.7 2.9E-08 9.8E-13 93.7 7.6 71 242-314 54-128 (202)
158 2kjq_A DNAA-related protein; s 98.7 1.8E-08 6.2E-13 90.4 5.7 60 514-588 35-97 (149)
159 2qen_A Walker-type ATPase; unk 98.7 1.1E-06 3.9E-11 89.8 20.1 184 206-413 10-241 (350)
160 1in4_A RUVB, holliday junction 98.7 3E-08 1E-12 101.5 7.8 94 479-588 23-116 (334)
161 1sxj_B Activator 1 37 kDa subu 98.7 2.4E-08 8.3E-13 101.2 7.0 92 478-588 18-121 (323)
162 2qby_A CDC6 homolog 1, cell di 98.7 3.5E-08 1.2E-12 102.6 8.3 99 480-587 19-141 (386)
163 2chq_A Replication factor C sm 98.7 1.5E-08 5.2E-13 102.6 5.3 97 477-588 13-116 (319)
164 2qby_B CDC6 homolog 3, cell di 98.6 1.9E-08 6.6E-13 104.7 6.2 98 481-588 20-147 (384)
165 2w58_A DNAI, primosome compone 98.6 2.1E-08 7.2E-13 94.7 5.3 69 516-586 55-127 (202)
166 1ojl_A Transcriptional regulat 98.6 7.7E-09 2.6E-13 104.4 2.3 72 514-588 24-110 (304)
167 1njg_A DNA polymerase III subu 98.6 2.7E-08 9.4E-13 95.9 6.0 92 479-588 21-140 (250)
168 2fna_A Conserved hypothetical 98.6 1E-06 3.4E-11 90.3 18.1 180 206-413 11-245 (357)
169 3aji_B S6C, proteasome (prosom 98.6 4.2E-08 1.4E-12 78.5 5.8 75 377-468 2-76 (83)
170 3j16_B RLI1P; ribosome recycli 98.6 6.5E-08 2.2E-12 106.2 9.2 28 239-266 100-127 (608)
171 3nbx_X ATPase RAVA; AAA+ ATPas 98.6 5.2E-09 1.8E-13 112.3 0.2 74 515-589 41-124 (500)
172 2vhj_A Ntpase P4, P4; non- hyd 98.6 4.9E-08 1.7E-12 97.5 6.9 76 511-588 119-196 (331)
173 3bos_A Putative DNA replicatio 98.6 4.3E-08 1.5E-12 94.7 6.2 65 514-588 51-118 (242)
174 1iqp_A RFCS; clamp loader, ext 98.6 5.4E-08 1.9E-12 98.8 6.9 93 477-588 21-124 (327)
175 2r44_A Uncharacterized protein 98.6 4.7E-09 1.6E-13 107.4 -1.1 92 481-589 27-124 (331)
176 3ozx_A RNAse L inhibitor; ATP 98.6 3.3E-08 1.1E-12 107.3 4.8 29 511-539 290-318 (538)
177 1yqt_A RNAse L inhibitor; ATP- 98.5 1.2E-07 4.2E-12 103.0 8.8 28 239-266 44-71 (538)
178 1sxj_E Activator 1 40 kDa subu 98.5 1.6E-07 5.4E-12 96.7 8.2 49 478-539 11-60 (354)
179 2iw3_A Elongation factor 3A; a 98.5 7.2E-08 2.5E-12 110.1 5.9 31 510-540 694-724 (986)
180 3bk7_A ABC transporter ATP-bin 98.5 7.8E-08 2.7E-12 105.7 5.9 28 239-266 114-141 (607)
181 1jr3_A DNA polymerase III subu 98.5 5.4E-08 1.8E-12 100.9 4.3 93 478-588 13-133 (373)
182 1svm_A Large T antigen; AAA+ f 98.5 5.1E-08 1.8E-12 100.7 3.9 120 236-375 163-284 (377)
183 2r2a_A Uncharacterized protein 98.5 1.5E-07 5.2E-12 88.5 6.8 125 243-377 6-154 (199)
184 1fnn_A CDC6P, cell division co 98.5 2.4E-07 8.3E-12 96.4 9.1 99 480-587 16-138 (389)
185 1sxj_C Activator 1 40 kDa subu 98.5 1.4E-07 4.7E-12 96.8 6.3 92 478-588 22-124 (340)
186 2qgz_A Helicase loader, putati 98.4 1.1E-07 3.7E-12 96.1 4.7 71 514-586 151-226 (308)
187 2gno_A DNA polymerase III, gam 98.4 2.9E-07 9.8E-12 92.7 7.2 68 516-588 19-96 (305)
188 1cr5_A SEC18P (residues 22 - 2 98.4 5.6E-06 1.9E-10 76.7 15.0 149 31-190 8-186 (189)
189 1qcs_A N-ethylmaleimide sensit 98.4 5.3E-06 1.8E-10 78.3 15.0 154 31-191 10-191 (211)
190 1ny5_A Transcriptional regulat 98.4 1.5E-06 5.3E-11 90.5 12.4 121 208-354 137-282 (387)
191 3ux8_A Excinuclease ABC, A sub 98.4 1.2E-06 4.3E-11 98.0 12.1 27 510-536 343-369 (670)
192 2qgz_A Helicase loader, putati 98.4 2.1E-07 7.2E-12 94.0 4.8 70 242-313 152-226 (308)
193 2jv2_A Putative uncharacterize 98.3 2.7E-06 9.3E-11 66.9 9.2 71 115-191 11-81 (83)
194 1ye8_A Protein THEP1, hypothet 98.3 5E-06 1.7E-10 76.7 11.8 26 244-269 2-27 (178)
195 2dzn_B 26S protease regulatory 98.3 3.4E-07 1.2E-11 72.9 2.9 69 379-464 1-69 (82)
196 3f9v_A Minichromosome maintena 98.3 5E-08 1.7E-12 107.4 -3.0 102 482-589 296-406 (595)
197 1tue_A Replication protein E1; 98.3 1E-06 3.6E-11 82.0 6.3 32 239-270 55-86 (212)
198 3k1j_A LON protease, ATP-depen 98.2 4E-07 1.4E-11 100.7 3.1 52 474-540 34-85 (604)
199 1a5t_A Delta prime, HOLB; zinc 98.2 2.4E-06 8.3E-11 87.2 8.6 72 514-588 23-122 (334)
200 1ye8_A Protein THEP1, hypothet 98.2 2.8E-06 9.6E-11 78.4 7.8 26 517-542 2-27 (178)
201 1svm_A Large T antigen; AAA+ f 98.2 9.1E-07 3.1E-11 91.4 4.8 67 510-588 164-230 (377)
202 1n0w_A DNA repair protein RAD5 98.2 3.7E-06 1.3E-10 81.3 8.8 79 238-316 20-134 (243)
203 2w0m_A SSO2452; RECA, SSPF, un 98.1 7.1E-06 2.4E-10 78.6 9.7 37 238-274 19-58 (235)
204 2yuj_A Ubiquitin fusion degrad 98.1 7E-05 2.4E-09 68.2 14.2 140 40-184 39-183 (190)
205 3hr8_A Protein RECA; alpha and 98.1 1.5E-05 5.2E-10 81.5 11.0 113 238-350 57-194 (356)
206 1zc1_A Ubiquitin fusion degrad 98.1 7.5E-05 2.6E-09 68.9 14.4 144 41-189 45-196 (208)
207 1tue_A Replication protein E1; 98.1 1.3E-06 4.5E-11 81.3 2.7 31 514-544 57-87 (212)
208 2cvh_A DNA repair and recombin 98.1 9.4E-06 3.2E-10 77.1 8.8 40 238-277 16-55 (220)
209 4a74_A DNA repair and recombin 98.0 5.9E-06 2E-10 79.1 7.1 29 238-266 21-49 (231)
210 3dzd_A Transcriptional regulat 98.0 1.4E-05 4.8E-10 82.6 9.9 121 209-354 130-273 (368)
211 3rlf_A Maltose/maltodextrin im 98.0 7.3E-06 2.5E-10 84.4 7.5 32 236-267 23-54 (381)
212 4g1u_C Hemin import ATP-bindin 98.0 7.8E-06 2.7E-10 80.4 6.9 30 237-266 32-61 (266)
213 2eyu_A Twitching motility prot 98.0 4E-06 1.4E-10 82.3 4.7 78 506-583 16-107 (261)
214 2zr9_A Protein RECA, recombina 98.0 1E-05 3.5E-10 82.9 7.5 78 238-315 57-153 (349)
215 4gp7_A Metallophosphoesterase; 98.0 4.2E-06 1.4E-10 76.7 4.0 25 237-261 4-28 (171)
216 1v5w_A DMC1, meiotic recombina 98.0 2.5E-05 8.6E-10 79.9 10.3 116 238-353 118-273 (343)
217 3gfo_A Cobalt import ATP-bindi 98.0 8.8E-06 3E-10 80.4 6.5 31 237-267 29-59 (275)
218 2ehv_A Hypothetical protein PH 97.9 2.4E-05 8.1E-10 75.8 9.3 38 238-275 26-67 (251)
219 1xp8_A RECA protein, recombina 97.9 2.7E-05 9.4E-10 80.0 10.2 115 238-352 70-209 (366)
220 3fvq_A Fe(3+) IONS import ATP- 97.9 1.3E-05 4.3E-10 82.0 7.6 32 236-267 24-55 (359)
221 3lda_A DNA repair protein RAD5 97.9 2.2E-05 7.7E-10 81.6 9.4 116 238-353 174-327 (400)
222 1w5s_A Origin recognition comp 97.9 1E-05 3.6E-10 84.6 7.0 74 515-588 50-152 (412)
223 3tui_C Methionine import ATP-b 97.9 1.3E-05 4.4E-10 82.0 7.3 31 237-267 49-79 (366)
224 2z43_A DNA repair and recombin 97.9 1.8E-05 6.1E-10 80.3 8.3 115 238-352 103-256 (324)
225 1pzn_A RAD51, DNA repair and r 97.9 1.8E-05 6.1E-10 81.2 8.0 41 237-277 126-175 (349)
226 3tif_A Uncharacterized ABC tra 97.9 1.6E-05 5.5E-10 76.7 7.1 32 236-267 25-56 (235)
227 2yyz_A Sugar ABC transporter, 97.9 1.7E-05 5.7E-10 81.3 7.5 32 236-267 23-54 (359)
228 1z47_A CYSA, putative ABC-tran 97.9 1.5E-05 5E-10 81.5 6.8 31 237-267 36-66 (355)
229 2it1_A 362AA long hypothetical 97.9 1.9E-05 6.5E-10 80.9 7.5 32 236-267 23-54 (362)
230 1n0w_A DNA repair protein RAD5 97.9 2.3E-05 8E-10 75.6 7.8 77 511-587 20-132 (243)
231 1u94_A RECA protein, recombina 97.8 4E-05 1.4E-09 78.5 9.5 78 238-315 59-155 (356)
232 2cvh_A DNA repair and recombin 97.8 3.6E-05 1.2E-09 73.0 8.5 40 511-550 16-55 (220)
233 2zr9_A Protein RECA, recombina 97.8 3.3E-05 1.1E-09 79.0 8.5 78 511-588 57-153 (349)
234 1qhx_A CPT, protein (chloramph 97.8 4.1E-05 1.4E-09 70.1 8.3 35 516-550 4-38 (178)
235 2w0m_A SSO2452; RECA, SSPF, un 97.8 3.4E-05 1.2E-09 73.7 8.0 29 511-539 19-47 (235)
236 2pcj_A ABC transporter, lipopr 97.8 1.8E-05 6.2E-10 75.8 5.9 31 237-267 25-55 (224)
237 3io5_A Recombination and repai 97.8 4.9E-05 1.7E-09 75.6 8.9 112 238-350 25-168 (333)
238 3jvv_A Twitching mobility prot 97.8 1.7E-05 5.9E-10 81.3 5.8 79 506-584 114-206 (356)
239 1v43_A Sugar-binding transport 97.8 2E-05 6.9E-10 81.1 6.1 31 236-266 31-61 (372)
240 2fna_A Conserved hypothetical 97.8 3.8E-05 1.3E-09 78.4 8.2 35 516-550 31-65 (357)
241 1vpl_A ABC transporter, ATP-bi 97.8 5.5E-05 1.9E-09 73.9 8.9 31 237-267 36-66 (256)
242 3d31_A Sulfate/molybdate ABC t 97.8 2.4E-05 8.2E-10 79.8 6.5 32 236-267 20-51 (348)
243 3vaa_A Shikimate kinase, SK; s 97.8 1.7E-05 5.7E-10 74.5 4.9 36 511-546 21-56 (199)
244 4a74_A DNA repair and recombin 97.8 3.4E-05 1.2E-09 73.7 7.2 29 511-539 21-49 (231)
245 1g29_1 MALK, maltose transport 97.8 2.5E-05 8.6E-10 80.5 6.5 31 237-267 24-54 (372)
246 1g6h_A High-affinity branched- 97.8 5E-05 1.7E-09 74.3 8.2 31 237-267 28-58 (257)
247 2olj_A Amino acid ABC transpor 97.8 4.3E-05 1.5E-09 74.9 7.6 31 237-267 45-75 (263)
248 3f8t_A Predicted ATPase involv 97.7 1.5E-05 5.1E-10 83.4 4.3 119 243-380 240-385 (506)
249 2ehv_A Hypothetical protein PH 97.7 8.8E-05 3E-09 71.8 9.7 26 511-536 26-51 (251)
250 2eyu_A Twitching motility prot 97.7 2.2E-05 7.5E-10 77.0 5.0 76 236-311 19-108 (261)
251 1qhx_A CPT, protein (chloramph 97.7 9.9E-05 3.4E-09 67.5 9.2 37 242-278 3-39 (178)
252 4gp7_A Metallophosphoesterase; 97.7 4.3E-05 1.5E-09 69.8 6.1 24 511-534 5-28 (171)
253 2r2a_A Uncharacterized protein 97.7 1.9E-05 6.6E-10 74.0 3.6 71 517-588 7-101 (199)
254 3hr8_A Protein RECA; alpha and 97.7 7.4E-05 2.5E-09 76.3 8.1 78 511-588 57-153 (356)
255 3nh6_A ATP-binding cassette SU 97.7 5.6E-05 1.9E-09 75.7 7.1 31 237-267 75-105 (306)
256 1oxx_K GLCV, glucose, ABC tran 97.7 2.3E-05 7.7E-10 80.3 4.2 32 236-267 25-56 (353)
257 1ny5_A Transcriptional regulat 97.7 1.8E-05 6.2E-10 82.4 3.5 71 515-589 160-246 (387)
258 1zp6_A Hypothetical protein AT 97.7 2.2E-05 7.6E-10 72.8 3.8 40 512-551 6-45 (191)
259 2onk_A Molybdate/tungstate ABC 97.7 3.4E-05 1.2E-09 74.6 5.2 31 236-267 19-49 (240)
260 1z6t_A APAF-1, apoptotic prote 97.7 0.00065 2.2E-08 74.6 16.2 167 208-413 124-323 (591)
261 2i3b_A HCR-ntpase, human cance 97.6 1.5E-05 5.1E-10 74.2 2.3 24 516-539 2-25 (189)
262 2ewv_A Twitching motility prot 97.6 4.7E-05 1.6E-09 78.7 5.9 79 505-583 126-218 (372)
263 2nq2_C Hypothetical ABC transp 97.6 6E-05 2.1E-09 73.5 6.3 31 237-267 26-56 (253)
264 2p5t_B PEZT; postsegregational 97.6 0.00011 3.7E-09 71.7 8.0 38 514-551 31-68 (253)
265 2yz2_A Putative ABC transporte 97.6 0.0001 3.5E-09 72.5 7.7 31 236-266 27-57 (266)
266 1nlf_A Regulatory protein REPA 97.6 0.0002 6.9E-09 70.8 9.8 29 238-266 26-54 (279)
267 2qen_A Walker-type ATPase; unk 97.6 0.00012 4E-09 74.5 8.3 31 516-548 32-62 (350)
268 3gd7_A Fusion complex of cysti 97.6 0.00012 4.1E-09 75.8 8.3 31 236-266 41-71 (390)
269 2pt7_A CAG-ALFA; ATPase, prote 97.6 2.3E-05 7.8E-10 79.7 2.8 75 511-585 167-251 (330)
270 3trf_A Shikimate kinase, SK; a 97.6 4.7E-05 1.6E-09 70.2 4.8 32 515-546 5-36 (185)
271 2ixe_A Antigen peptide transpo 97.6 0.00013 4.3E-09 72.0 8.1 32 236-267 39-70 (271)
272 3vaa_A Shikimate kinase, SK; s 97.6 3.9E-05 1.3E-09 71.9 4.2 37 237-273 20-56 (199)
273 1u0j_A DNA replication protein 97.6 0.00021 7.2E-09 69.5 9.3 29 240-268 102-130 (267)
274 1b0u_A Histidine permease; ABC 97.6 9.7E-05 3.3E-09 72.4 6.9 31 237-267 27-57 (262)
275 3jvv_A Twitching mobility prot 97.5 6.2E-05 2.1E-09 77.1 5.5 72 240-311 121-206 (356)
276 1xp8_A RECA protein, recombina 97.5 0.00015 5.2E-09 74.5 8.3 78 511-588 70-166 (366)
277 2i1q_A DNA repair and recombin 97.5 0.00012 4.1E-09 74.1 7.5 28 238-265 94-121 (322)
278 1zp6_A Hypothetical protein AT 97.5 4.9E-05 1.7E-09 70.4 4.2 41 238-278 5-45 (191)
279 2cbz_A Multidrug resistance-as 97.5 0.00019 6.5E-09 69.2 8.5 31 236-266 25-55 (237)
280 2ff7_A Alpha-hemolysin translo 97.5 0.00015 5.1E-09 70.4 7.7 31 237-267 30-60 (247)
281 1cr0_A DNA primase/helicase; R 97.5 0.00023 7.8E-09 71.0 9.3 38 237-274 30-71 (296)
282 2ghi_A Transport protein; mult 97.5 0.00016 5.3E-09 70.9 7.7 32 236-267 40-71 (260)
283 1ji0_A ABC transporter; ATP bi 97.5 0.00013 4.4E-09 70.6 6.9 30 237-266 27-56 (240)
284 2qi9_C Vitamin B12 import ATP- 97.5 0.00017 5.7E-09 70.1 7.7 32 236-267 20-51 (249)
285 1kag_A SKI, shikimate kinase I 97.5 6.8E-05 2.3E-09 68.3 4.6 30 516-545 5-34 (173)
286 3sfz_A APAF-1, apoptotic pepti 97.5 0.0012 4.1E-08 78.9 16.6 169 207-412 123-322 (1249)
287 2dr3_A UPF0273 protein PH0284; 97.5 0.00072 2.5E-08 65.0 11.9 38 238-275 19-59 (247)
288 1pzn_A RAD51, DNA repair and r 97.5 0.00017 6E-09 73.7 7.8 41 510-550 126-175 (349)
289 1u94_A RECA protein, recombina 97.5 0.00024 8.4E-09 72.7 8.8 78 511-588 59-155 (356)
290 2rhm_A Putative kinase; P-loop 97.5 8.2E-05 2.8E-09 68.9 4.8 34 513-546 3-36 (193)
291 3uie_A Adenylyl-sulfate kinase 97.5 0.00019 6.5E-09 67.2 7.1 39 513-551 23-64 (200)
292 2pjz_A Hypothetical protein ST 97.5 0.00025 8.6E-09 69.4 8.3 30 236-266 25-54 (263)
293 1y63_A LMAJ004144AAA protein; 97.4 7.5E-05 2.6E-09 69.0 4.0 32 515-546 10-42 (184)
294 2p5t_B PEZT; postsegregational 97.4 0.00052 1.8E-08 66.8 10.2 40 239-278 29-68 (253)
295 1via_A Shikimate kinase; struc 97.4 9.2E-05 3.1E-09 67.7 4.4 30 517-546 6-35 (175)
296 2z43_A DNA repair and recombin 97.4 0.00023 7.7E-09 72.1 7.4 77 511-587 103-216 (324)
297 1u0j_A DNA replication protein 97.4 9E-05 3.1E-09 72.2 4.2 27 514-540 103-129 (267)
298 3kb2_A SPBC2 prophage-derived 97.4 0.0001 3.5E-09 66.8 4.4 31 517-547 3-33 (173)
299 3iij_A Coilin-interacting nucl 97.4 0.00013 4.6E-09 66.9 5.2 33 514-546 10-42 (180)
300 3dzd_A Transcriptional regulat 97.4 0.00017 6E-09 74.3 6.6 71 516-589 153-237 (368)
301 4eun_A Thermoresistant glucoki 97.4 0.00012 4.1E-09 68.5 4.9 37 513-551 27-63 (200)
302 2r6a_A DNAB helicase, replicat 97.4 0.00047 1.6E-08 73.3 9.8 38 238-275 199-240 (454)
303 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00035 1.2E-08 68.4 8.2 66 515-582 4-79 (260)
304 1gvn_B Zeta; postsegregational 97.4 0.00027 9.4E-09 70.2 7.5 34 515-548 33-66 (287)
305 2ewv_A Twitching motility prot 97.4 0.00014 4.8E-09 75.1 5.4 80 232-311 126-219 (372)
306 1v5w_A DMC1, meiotic recombina 97.4 0.00042 1.5E-08 70.7 8.9 77 511-587 118-232 (343)
307 2b8t_A Thymidine kinase; deoxy 97.3 0.00042 1.4E-08 66.0 8.1 72 241-313 11-101 (223)
308 2ze6_A Isopentenyl transferase 97.3 0.00014 4.6E-09 71.0 4.4 32 517-548 3-34 (253)
309 1htw_A HI0065; nucleotide-bind 97.3 0.00014 4.6E-09 65.5 4.1 31 509-539 27-57 (158)
310 1gvn_B Zeta; postsegregational 97.3 0.0008 2.7E-08 66.8 10.1 39 240-278 31-69 (287)
311 3trf_A Shikimate kinase, SK; a 97.3 0.00013 4.5E-09 67.1 4.1 32 242-273 5-36 (185)
312 1knq_A Gluconate kinase; ALFA/ 97.3 0.00017 5.9E-09 65.7 4.8 32 514-545 7-38 (175)
313 3umf_A Adenylate kinase; rossm 97.3 0.00016 5.4E-09 68.6 4.6 35 512-546 26-60 (217)
314 3cm0_A Adenylate kinase; ATP-b 97.3 0.00014 4.7E-09 67.1 4.1 32 515-546 4-35 (186)
315 2rhm_A Putative kinase; P-loop 97.3 0.00019 6.4E-09 66.4 5.0 34 239-272 2-35 (193)
316 3lda_A DNA repair protein RAD5 97.3 0.00038 1.3E-08 72.3 7.8 78 511-588 174-287 (400)
317 2iyv_A Shikimate kinase, SK; t 97.3 0.00016 5.4E-09 66.6 4.4 30 517-546 4-33 (184)
318 1aky_A Adenylate kinase; ATP:A 97.3 0.00018 6.2E-09 68.4 4.9 32 515-546 4-35 (220)
319 1zuh_A Shikimate kinase; alpha 97.3 0.00018 6.2E-09 65.1 4.6 31 516-546 8-38 (168)
320 1kag_A SKI, shikimate kinase I 97.3 0.00018 6.1E-09 65.4 4.6 35 242-278 4-38 (173)
321 2dr3_A UPF0273 protein PH0284; 97.3 0.00082 2.8E-08 64.6 9.5 29 511-539 19-47 (247)
322 3sr0_A Adenylate kinase; phosp 97.3 0.00017 6E-09 67.8 4.4 29 518-546 3-31 (206)
323 3uie_A Adenylyl-sulfate kinase 97.3 0.00075 2.6E-08 63.0 8.7 39 240-278 23-64 (200)
324 2orw_A Thymidine kinase; TMTK, 97.3 0.00029 9.9E-09 65.1 5.7 32 242-273 3-37 (184)
325 2a5y_B CED-4; apoptosis; HET: 97.2 0.0026 8.8E-08 69.3 14.1 166 211-411 131-330 (549)
326 1y63_A LMAJ004144AAA protein; 97.2 0.00018 6.2E-09 66.4 4.2 33 239-271 7-40 (184)
327 2cdn_A Adenylate kinase; phosp 97.2 0.00025 8.5E-09 66.3 5.1 31 516-546 21-51 (201)
328 2pez_A Bifunctional 3'-phospho 97.2 0.0005 1.7E-08 62.9 7.0 38 514-551 4-44 (179)
329 2c95_A Adenylate kinase 1; tra 97.2 0.00023 7.8E-09 66.0 4.8 33 514-546 8-40 (196)
330 3lw7_A Adenylate kinase relate 97.2 0.0002 7E-09 64.8 4.3 29 517-546 3-31 (179)
331 3t61_A Gluconokinase; PSI-biol 97.2 0.00025 8.5E-09 66.4 4.9 32 515-546 18-49 (202)
332 1tev_A UMP-CMP kinase; ploop, 97.2 0.00023 7.9E-09 65.9 4.6 31 516-546 4-34 (196)
333 1e6c_A Shikimate kinase; phosp 97.2 0.00023 7.9E-09 64.6 4.5 30 517-546 4-33 (173)
334 1vma_A Cell division protein F 97.2 0.00074 2.5E-08 67.6 8.5 72 513-585 102-197 (306)
335 3thx_B DNA mismatch repair pro 97.2 0.00065 2.2E-08 77.7 9.1 29 237-265 668-696 (918)
336 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00087 3E-08 65.5 8.9 39 242-280 4-45 (260)
337 1nlf_A Regulatory protein REPA 97.2 0.00063 2.2E-08 67.2 7.9 29 511-539 26-54 (279)
338 1vma_A Cell division protein F 97.2 0.0011 3.8E-08 66.3 9.7 73 239-311 101-196 (306)
339 3be4_A Adenylate kinase; malar 97.2 0.00023 7.9E-09 67.6 4.5 31 516-546 6-36 (217)
340 3iij_A Coilin-interacting nucl 97.2 0.00025 8.5E-09 65.0 4.5 33 240-272 9-41 (180)
341 3ozx_A RNAse L inhibitor; ATP 97.2 0.00035 1.2E-08 75.6 6.4 30 237-266 289-318 (538)
342 1zd8_A GTP:AMP phosphotransfer 97.2 0.00023 7.8E-09 68.0 4.4 33 514-546 6-38 (227)
343 2pt7_A CAG-ALFA; ATPase, prote 97.2 7.8E-05 2.7E-09 75.7 1.1 74 239-312 168-251 (330)
344 3qf4_A ABC transporter, ATP-bi 97.2 0.0006 2E-08 74.8 8.2 32 236-267 363-394 (587)
345 3nwj_A ATSK2; P loop, shikimat 97.2 0.00018 6.2E-09 69.9 3.6 32 515-546 48-79 (250)
346 4eun_A Thermoresistant glucoki 97.2 0.00033 1.1E-08 65.5 5.2 37 240-278 27-63 (200)
347 3qf4_B Uncharacterized ABC tra 97.2 0.00065 2.2E-08 74.8 8.4 32 236-267 375-406 (598)
348 2b8t_A Thymidine kinase; deoxy 97.2 0.00042 1.5E-08 65.9 5.9 72 516-587 13-102 (223)
349 1qf9_A UMP/CMP kinase, protein 97.2 0.0003 1E-08 64.9 4.8 31 516-546 7-37 (194)
350 2zts_A Putative uncharacterize 97.2 0.00064 2.2E-08 65.5 7.3 38 238-275 26-67 (251)
351 1htw_A HI0065; nucleotide-bind 97.2 0.00028 9.7E-09 63.4 4.3 31 236-266 27-57 (158)
352 1ak2_A Adenylate kinase isoenz 97.1 0.00033 1.1E-08 67.3 5.0 31 516-546 17-47 (233)
353 1kht_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 65.3 4.2 31 516-546 4-39 (192)
354 4a82_A Cystic fibrosis transme 97.1 0.00052 1.8E-08 75.3 7.2 32 236-267 361-392 (578)
355 1cke_A CK, MSSA, protein (cyti 97.1 0.00034 1.2E-08 66.6 5.0 30 516-545 6-35 (227)
356 2vli_A Antibiotic resistance p 97.1 0.00023 7.8E-09 65.3 3.7 29 516-544 6-34 (183)
357 3dl0_A Adenylate kinase; phosp 97.1 0.00028 9.6E-09 66.7 4.4 30 517-546 2-31 (216)
358 1knq_A Gluconate kinase; ALFA/ 97.1 0.00038 1.3E-08 63.4 5.1 36 241-278 7-42 (175)
359 3io5_A Recombination and repai 97.1 0.0011 3.8E-08 65.9 8.5 77 511-588 25-125 (333)
360 3upu_A ATP-dependent DNA helic 97.1 0.0015 5E-08 69.5 10.3 23 244-266 47-69 (459)
361 2pt5_A Shikimate kinase, SK; a 97.1 0.00032 1.1E-08 63.3 4.5 30 517-546 2-31 (168)
362 3fb4_A Adenylate kinase; psych 97.1 0.00031 1E-08 66.4 4.4 29 518-546 3-31 (216)
363 1via_A Shikimate kinase; struc 97.1 0.00033 1.1E-08 63.9 4.5 29 244-272 6-34 (175)
364 2ius_A DNA translocase FTSK; n 97.1 0.0024 8E-08 68.2 11.6 76 301-386 296-374 (512)
365 3bh0_A DNAB-like replicative h 97.1 0.0024 8.3E-08 64.2 11.2 38 238-275 64-104 (315)
366 3kb2_A SPBC2 prophage-derived 97.1 0.00031 1.1E-08 63.5 4.2 31 244-274 3-33 (173)
367 2orw_A Thymidine kinase; TMTK, 97.1 0.00018 6.1E-09 66.5 2.6 71 516-588 4-90 (184)
368 2bwj_A Adenylate kinase 5; pho 97.1 0.00034 1.2E-08 65.0 4.5 32 515-546 12-43 (199)
369 3b60_A Lipid A export ATP-bind 97.1 0.00066 2.3E-08 74.5 7.4 32 236-267 363-394 (582)
370 1ly1_A Polynucleotide kinase; 97.1 0.00026 8.7E-09 64.7 3.4 30 516-545 3-33 (181)
371 2oap_1 GSPE-2, type II secreti 97.1 0.00026 9E-09 76.0 3.9 73 512-584 257-343 (511)
372 3b5x_A Lipid A export ATP-bind 97.1 0.0013 4.4E-08 72.2 9.5 31 236-266 363-393 (582)
373 3tlx_A Adenylate kinase 2; str 97.1 0.00041 1.4E-08 67.1 5.0 33 514-546 28-60 (243)
374 3dm5_A SRP54, signal recogniti 97.1 0.0048 1.6E-07 64.6 13.2 71 241-311 99-192 (443)
375 2pez_A Bifunctional 3'-phospho 97.1 0.00055 1.9E-08 62.6 5.4 39 240-278 3-44 (179)
376 3cm0_A Adenylate kinase; ATP-b 97.1 0.00038 1.3E-08 64.0 4.4 31 241-271 3-33 (186)
377 2bbw_A Adenylate kinase 4, AK4 97.1 0.00039 1.3E-08 67.4 4.6 31 515-545 27-57 (246)
378 1ukz_A Uridylate kinase; trans 97.1 0.00047 1.6E-08 64.4 5.1 31 516-546 16-46 (203)
379 1zak_A Adenylate kinase; ATP:A 97.1 0.0003 1E-08 66.9 3.8 32 515-546 5-36 (222)
380 2q6t_A DNAB replication FORK h 97.1 0.0015 5.1E-08 69.1 9.5 38 238-275 196-237 (444)
381 3tr0_A Guanylate kinase, GMP k 97.0 0.00034 1.2E-08 65.4 4.0 27 513-539 5-31 (205)
382 2iyv_A Shikimate kinase, SK; t 97.0 0.00035 1.2E-08 64.2 3.7 30 243-272 3-32 (184)
383 2yvu_A Probable adenylyl-sulfa 97.0 0.002 6.7E-08 59.3 8.9 38 514-551 12-52 (186)
384 1zuh_A Shikimate kinase; alpha 97.0 0.00046 1.6E-08 62.4 4.5 31 242-272 7-37 (168)
385 4e22_A Cytidylate kinase; P-lo 97.0 0.00049 1.7E-08 67.0 4.8 31 514-544 26-56 (252)
386 2if2_A Dephospho-COA kinase; a 97.0 0.00041 1.4E-08 64.9 4.0 29 517-546 3-31 (204)
387 2yhs_A FTSY, cell division pro 97.0 0.0009 3.1E-08 70.8 6.9 76 511-586 289-387 (503)
388 3e1s_A Exodeoxyribonuclease V, 97.0 0.001 3.5E-08 72.6 7.6 99 242-354 204-318 (574)
389 3nwj_A ATSK2; P loop, shikimat 97.0 0.00037 1.3E-08 67.6 3.7 31 242-272 48-78 (250)
390 1aky_A Adenylate kinase; ATP:A 97.0 0.00062 2.1E-08 64.6 5.2 32 241-272 3-34 (220)
391 3c8u_A Fructokinase; YP_612366 97.0 0.00035 1.2E-08 65.8 3.4 37 513-549 20-61 (208)
392 1jjv_A Dephospho-COA kinase; P 97.0 0.00036 1.2E-08 65.5 3.5 28 517-545 4-31 (206)
393 2gza_A Type IV secretion syste 97.0 0.00054 1.8E-08 70.4 5.1 77 509-585 169-263 (361)
394 1z6g_A Guanylate kinase; struc 97.0 0.00039 1.3E-08 66.1 3.7 29 511-539 19-47 (218)
395 1e4v_A Adenylate kinase; trans 97.0 0.00045 1.5E-08 65.3 4.1 30 517-546 2-31 (214)
396 2jaq_A Deoxyguanosine kinase; 97.0 0.00046 1.6E-08 64.3 4.2 30 517-546 2-31 (205)
397 2c95_A Adenylate kinase 1; tra 97.0 0.00057 2E-08 63.3 4.8 32 241-272 8-39 (196)
398 2cdn_A Adenylate kinase; phosp 97.0 0.00065 2.2E-08 63.4 5.1 32 241-272 19-50 (201)
399 1tev_A UMP-CMP kinase; ploop, 97.0 0.00063 2.2E-08 62.8 5.0 35 242-278 3-37 (196)
400 3umf_A Adenylate kinase; rossm 97.0 0.0007 2.4E-08 64.1 5.3 40 239-280 26-65 (217)
401 3asz_A Uridine kinase; cytidin 97.0 0.00041 1.4E-08 65.3 3.7 32 514-545 5-38 (211)
402 1znw_A Guanylate kinase, GMP k 97.0 0.00043 1.5E-08 65.1 3.8 30 511-540 16-45 (207)
403 2ze6_A Isopentenyl transferase 97.0 0.0005 1.7E-08 67.0 4.3 32 244-275 3-34 (253)
404 2xb4_A Adenylate kinase; ATP-b 96.9 0.00054 1.8E-08 65.3 4.4 29 518-546 3-31 (223)
405 3t61_A Gluconokinase; PSI-biol 96.9 0.00064 2.2E-08 63.5 4.9 31 242-272 18-48 (202)
406 2j41_A Guanylate kinase; GMP, 96.9 0.0004 1.4E-08 65.0 3.5 28 512-539 3-30 (207)
407 2v54_A DTMP kinase, thymidylat 96.9 0.00064 2.2E-08 63.4 4.9 34 515-548 4-38 (204)
408 3tr0_A Guanylate kinase, GMP k 96.9 0.00053 1.8E-08 64.0 4.2 29 239-267 4-32 (205)
409 2iut_A DNA translocase FTSK; n 96.9 0.0076 2.6E-07 64.9 13.6 74 303-386 345-420 (574)
410 3crm_A TRNA delta(2)-isopenten 96.9 0.0019 6.4E-08 64.8 8.3 35 242-276 5-39 (323)
411 2fz4_A DNA repair protein RAD2 96.9 0.0037 1.3E-07 60.0 10.2 33 243-275 109-141 (237)
412 3crm_A TRNA delta(2)-isopenten 96.9 0.00052 1.8E-08 68.9 4.1 34 516-549 6-39 (323)
413 1m7g_A Adenylylsulfate kinase; 96.9 0.0012 4.1E-08 62.2 6.5 40 512-551 22-65 (211)
414 1lvg_A Guanylate kinase, GMP k 96.9 0.00048 1.6E-08 64.4 3.6 26 514-539 3-28 (198)
415 1b0u_A Histidine permease; ABC 96.9 0.00035 1.2E-08 68.4 2.8 39 510-548 27-67 (262)
416 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00023 7.9E-09 72.1 1.5 29 517-545 26-54 (359)
417 3r20_A Cytidylate kinase; stru 96.9 0.0007 2.4E-08 64.8 4.8 30 516-545 10-39 (233)
418 1z6g_A Guanylate kinase; struc 96.9 0.00049 1.7E-08 65.4 3.7 31 236-266 17-47 (218)
419 2pbr_A DTMP kinase, thymidylat 96.9 0.00072 2.5E-08 62.4 4.8 30 518-547 3-35 (195)
420 3thx_B DNA mismatch repair pro 96.9 0.0011 3.9E-08 75.7 7.2 28 511-538 669-696 (918)
421 1ly1_A Polynucleotide kinase; 96.9 0.00053 1.8E-08 62.5 3.7 26 243-268 3-29 (181)
422 1kht_A Adenylate kinase; phosp 96.9 0.00065 2.2E-08 62.5 4.4 26 242-267 3-28 (192)
423 1zd8_A GTP:AMP phosphotransfer 96.9 0.00069 2.4E-08 64.6 4.6 33 240-272 5-37 (227)
424 3lw7_A Adenylate kinase relate 96.9 0.00077 2.6E-08 60.9 4.7 29 244-273 3-31 (179)
425 1e6c_A Shikimate kinase; phosp 96.9 0.00071 2.4E-08 61.3 4.5 30 243-272 3-32 (173)
426 2z0h_A DTMP kinase, thymidylat 96.9 0.00082 2.8E-08 62.2 4.9 31 518-548 3-36 (197)
427 1kgd_A CASK, peripheral plasma 96.9 0.00062 2.1E-08 62.5 4.0 26 515-540 5-30 (180)
428 2vli_A Antibiotic resistance p 96.9 0.0005 1.7E-08 62.9 3.4 30 242-271 5-34 (183)
429 2v9p_A Replication protein E1; 96.9 0.0006 2.1E-08 68.0 4.1 34 509-542 120-153 (305)
430 3thx_A DNA mismatch repair pro 96.9 0.002 6.9E-08 73.9 9.0 27 238-264 658-684 (934)
431 1nks_A Adenylate kinase; therm 96.9 0.00042 1.4E-08 63.9 2.8 36 517-552 3-41 (194)
432 2olj_A Amino acid ABC transpor 96.9 0.00041 1.4E-08 67.9 2.8 31 510-540 45-75 (263)
433 3tlx_A Adenylate kinase 2; str 96.9 0.0007 2.4E-08 65.5 4.4 33 240-272 27-59 (243)
434 3tif_A Uncharacterized ABC tra 96.8 0.00033 1.1E-08 67.5 2.0 31 510-540 26-56 (235)
435 2jeo_A Uridine-cytidine kinase 96.8 0.0006 2.1E-08 66.0 3.9 31 512-542 22-52 (245)
436 3kl4_A SRP54, signal recogniti 96.8 0.0043 1.5E-07 64.8 10.5 71 241-311 96-189 (433)
437 1qf9_A UMP/CMP kinase, protein 96.8 0.001 3.5E-08 61.2 5.2 31 242-272 6-36 (194)
438 3bk7_A ABC transporter ATP-bin 96.8 0.002 6.8E-08 70.7 8.3 28 239-266 379-406 (607)
439 2v9p_A Replication protein E1; 96.8 0.00074 2.5E-08 67.4 4.4 34 236-269 120-153 (305)
440 1yqt_A RNAse L inhibitor; ATP- 96.8 0.0019 6.5E-08 69.9 8.0 28 239-266 309-336 (538)
441 2bwj_A Adenylate kinase 5; pho 96.8 0.0009 3.1E-08 62.1 4.7 31 242-272 12-42 (199)
442 2bbw_A Adenylate kinase 4, AK4 96.8 0.00086 2.9E-08 64.8 4.6 31 241-271 26-56 (246)
443 3e70_C DPA, signal recognition 96.8 0.0022 7.7E-08 64.7 7.8 74 513-586 127-223 (328)
444 1ak2_A Adenylate kinase isoenz 96.8 0.0011 3.8E-08 63.5 5.4 32 241-272 15-46 (233)
445 2pcj_A ABC transporter, lipopr 96.8 0.00031 1.1E-08 67.1 1.4 30 511-540 26-55 (224)
446 2j41_A Guanylate kinase; GMP, 96.8 0.00066 2.3E-08 63.5 3.6 28 239-266 3-30 (207)
447 2bdt_A BH3686; alpha-beta prot 96.8 0.00084 2.9E-08 61.9 4.3 34 517-551 4-37 (189)
448 1p9r_A General secretion pathw 96.8 0.0023 7.9E-08 66.8 8.0 71 241-311 166-246 (418)
449 3be4_A Adenylate kinase; malar 96.8 0.00086 2.9E-08 63.5 4.4 32 242-273 5-36 (217)
450 2ff7_A Alpha-hemolysin translo 96.8 0.00046 1.6E-08 67.0 2.5 31 510-540 30-60 (247)
451 2cbz_A Multidrug resistance-as 96.8 0.0004 1.4E-08 66.9 2.0 30 510-539 26-55 (237)
452 2ixe_A Antigen peptide transpo 96.8 0.00053 1.8E-08 67.5 2.9 31 510-540 40-70 (271)
453 2ihy_A ABC transporter, ATP-bi 96.8 0.00048 1.6E-08 68.1 2.5 31 510-540 42-72 (279)
454 4a1f_A DNAB helicase, replicat 96.8 0.013 4.4E-07 59.2 13.1 48 228-275 31-82 (338)
455 2i1q_A DNA repair and recombin 96.8 0.0013 4.4E-08 66.4 5.8 28 511-538 94-121 (322)
456 1znw_A Guanylate kinase, GMP k 96.8 0.00078 2.7E-08 63.3 3.9 30 238-267 16-45 (207)
457 1tf7_A KAIC; homohexamer, hexa 96.8 0.0043 1.5E-07 67.1 10.3 78 238-315 277-385 (525)
458 2yl4_A ATP-binding cassette SU 96.8 0.0018 6E-08 71.3 7.2 32 236-267 364-395 (595)
459 1ukz_A Uridylate kinase; trans 96.8 0.0012 4E-08 61.7 5.0 32 241-272 14-45 (203)
460 2wwf_A Thymidilate kinase, put 96.8 0.00043 1.5E-08 65.0 2.0 29 515-543 10-38 (212)
461 1cke_A CK, MSSA, protein (cyti 96.8 0.0013 4.3E-08 62.6 5.3 30 242-271 5-34 (227)
462 3c8u_A Fructokinase; YP_612366 96.8 0.0013 4.4E-08 61.9 5.3 28 240-267 20-47 (208)
463 1nn5_A Similar to deoxythymidy 96.7 0.00041 1.4E-08 65.4 1.8 28 514-541 8-35 (215)
464 1zak_A Adenylate kinase; ATP:A 96.7 0.00082 2.8E-08 63.8 4.0 31 241-271 4-34 (222)
465 2plr_A DTMP kinase, probable t 96.7 0.0013 4.3E-08 61.7 5.3 31 516-546 5-37 (213)
466 3a00_A Guanylate kinase, GMP k 96.7 0.00075 2.6E-08 62.3 3.5 25 516-540 2-26 (186)
467 1g5t_A COB(I)alamin adenosyltr 96.7 0.0064 2.2E-07 56.2 9.7 103 242-354 28-163 (196)
468 3dl0_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 62.8 4.5 30 244-273 2-31 (216)
469 1sgw_A Putative ABC transporte 96.7 0.0004 1.4E-08 65.8 1.6 30 511-540 31-60 (214)
470 1kgd_A CASK, peripheral plasma 96.7 0.00098 3.3E-08 61.1 4.2 27 241-267 4-30 (180)
471 3dm5_A SRP54, signal recogniti 96.7 0.0038 1.3E-07 65.3 9.1 74 514-587 99-195 (443)
472 3fb4_A Adenylate kinase; psych 96.7 0.0011 3.7E-08 62.6 4.7 29 244-272 2-30 (216)
473 2px0_A Flagellar biosynthesis 96.7 0.0052 1.8E-07 61.2 9.7 36 240-275 103-142 (296)
474 3sr0_A Adenylate kinase; phosp 96.7 0.0011 3.8E-08 62.3 4.6 34 244-279 2-35 (206)
475 2pt5_A Shikimate kinase, SK; a 96.7 0.0012 4.2E-08 59.4 4.8 29 244-272 2-30 (168)
476 3ake_A Cytidylate kinase; CMP 96.7 0.001 3.5E-08 62.1 4.4 30 517-546 4-33 (208)
477 1g5t_A COB(I)alamin adenosyltr 96.7 0.0029 1E-07 58.5 7.3 68 516-584 29-130 (196)
478 2grj_A Dephospho-COA kinase; T 96.7 0.0011 3.6E-08 61.7 4.4 29 518-546 15-43 (192)
479 2zu0_C Probable ATP-dependent 96.7 0.00056 1.9E-08 67.1 2.6 29 509-537 40-68 (267)
480 3j16_B RLI1P; ribosome recycli 96.7 0.0024 8.2E-08 70.0 7.8 26 241-266 377-402 (608)
481 2onk_A Molybdate/tungstate ABC 96.7 0.00056 1.9E-08 66.0 2.5 30 510-540 20-49 (240)
482 3gfo_A Cobalt import ATP-bindi 96.7 0.00043 1.5E-08 68.2 1.7 31 510-540 29-59 (275)
483 1ji0_A ABC transporter; ATP bi 96.7 0.00044 1.5E-08 66.8 1.6 30 511-540 28-57 (240)
484 1g6h_A High-affinity branched- 96.7 0.00045 1.6E-08 67.4 1.7 30 511-540 29-58 (257)
485 1p9r_A General secretion pathw 96.7 0.0016 5.4E-08 68.1 5.9 36 506-541 158-193 (418)
486 2px0_A Flagellar biosynthesis 96.7 0.0026 9E-08 63.3 7.3 68 514-583 104-191 (296)
487 2qt1_A Nicotinamide riboside k 96.7 0.00078 2.7E-08 63.2 3.2 32 514-545 20-52 (207)
488 3tau_A Guanylate kinase, GMP k 96.7 0.00087 3E-08 63.1 3.6 27 513-539 6-32 (208)
489 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00054 1.9E-08 66.6 2.2 29 510-538 24-52 (250)
490 4f4c_A Multidrug resistance pr 96.7 0.0017 5.8E-08 77.9 6.9 33 236-268 438-470 (1321)
491 1q3t_A Cytidylate kinase; nucl 96.7 0.0014 4.7E-08 63.0 5.0 32 514-545 15-46 (236)
492 2qi9_C Vitamin B12 import ATP- 96.7 0.00048 1.6E-08 66.9 1.7 30 511-540 22-51 (249)
493 2jeo_A Uridine-cytidine kinase 96.7 0.001 3.6E-08 64.3 4.1 33 237-269 20-52 (245)
494 1mv5_A LMRA, multidrug resista 96.7 0.00051 1.7E-08 66.4 1.9 30 510-539 23-52 (243)
495 1vpl_A ABC transporter, ATP-bi 96.7 0.00054 1.9E-08 66.8 2.1 31 510-540 36-66 (256)
496 1jr3_D DNA polymerase III, del 96.7 0.013 4.5E-07 59.4 12.6 142 242-409 18-176 (343)
497 2pze_A Cystic fibrosis transme 96.7 0.00049 1.7E-08 65.9 1.7 31 510-540 29-59 (229)
498 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00057 1.9E-08 69.7 2.3 31 510-540 25-55 (359)
499 3lnc_A Guanylate kinase, GMP k 96.7 0.00054 1.9E-08 65.6 2.0 29 511-539 23-52 (231)
500 4g1u_C Hemin import ATP-bindin 96.7 0.00047 1.6E-08 67.7 1.5 30 510-539 32-61 (266)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-106 Score=906.07 Aligned_cols=580 Identities=81% Similarity=1.302 Sum_probs=536.2
Q ss_pred ccCCCCcchhHHhhhcCCCCeEEEccccCCCCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCCCCCeEEe
Q 007764 10 AKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRM 89 (590)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~ 89 (590)
+..++.+++|||++.++.||+|+|+++.++++++|+|+|++|++||+.+||+|+|+|++++.+++|++++++++.+.|+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~ 84 (806)
T 3cf2_A 5 ADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRM 84 (806)
T ss_dssp ----------------CCTTEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCEE
T ss_pred cCCCCCCchhhhhhccCCCceEEEccCCCCCCCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCCCCCCCEEEe
Confidence 44455689999999999999999999988899999999999999999999999999999889999999999999999999
Q ss_pred CHHHHhhccccCCCeEEEEEccccCCCceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEE
Q 007764 90 NKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFK 169 (590)
Q Consensus 90 ~~~~r~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 169 (590)
++.+|+|+|+++||.|+|+++..+++|++|++.|+..+.....+..+..++++||...++||..||+|.+...+..+.|+
T Consensus 85 ~~~~r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~ 164 (806)
T 3cf2_A 85 NRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFK 164 (806)
T ss_dssp CHHHHHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEE
T ss_pred CHHHHHhcCCCCCCEEEEEECCCCCcCCEEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEE
Confidence 99999999999999999999878899999999999887777777888899999998888999999999999888899999
Q ss_pred EEEeCCCCeEEecCCceEEecCCCccccc-cccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEE
Q 007764 170 VIETDPPEYCVVAPDTEIFCEGEPVRRED-ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLY 248 (590)
Q Consensus 170 v~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~ 248 (590)
|++++|.++++++++|.|.+.+.|..+.. ....+.++|+||||+++++++|++++.+|+++|++|..+|+.++++||||
T Consensus 165 V~~~~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~ 244 (806)
T 3cf2_A 165 VVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLY 244 (806)
T ss_dssp EEEESSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEE
T ss_pred EEEEeCCCCeEECCCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEE
Confidence 99999999999999999998887765432 33568899999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHH
Q 007764 249 GPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI 328 (590)
Q Consensus 249 GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v 328 (590)
||||||||+||+++|++++.+++.++++++.+++.|+++..++.+|+.|+...|+||||||+|.++++++...++..+++
T Consensus 245 GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~ri 324 (806)
T 3cf2_A 245 GPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRI 324 (806)
T ss_dssp CCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888999
Q ss_pred HHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcC
Q 007764 329 VSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTH 408 (590)
Q Consensus 329 ~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~ 408 (590)
+++|+.+|+++..+.+|+||++||+++.+|++++|+|||+++|+++.|+..+|.+||+.+++++.+..++++..+|..|+
T Consensus 325 v~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~ 404 (806)
T 3cf2_A 325 VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 404 (806)
T ss_dssp HHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCC
T ss_pred HHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccccccccCCcccccccccch
Q 007764 409 GYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLEN 488 (590)
Q Consensus 409 g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~~~~iggl~~ 488 (590)
||+|+|+..+|.+|++.++++..+.+...+.....+......++.+||..|+....|+.+++..++.|+++|+++||+++
T Consensus 405 GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~ 484 (806)
T 3cf2_A 405 GHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLED 484 (806)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHH
Confidence 99999999999999999999887766666666666666778899999999999999999999999999999999999999
Q ss_pred hhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHH
Q 007764 489 VKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFD 568 (590)
Q Consensus 489 vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~ 568 (590)
+|+.|++.+.||+.+++.|.++++++++|+|||||||||||++||++|++++.+|+.+++++++++|+|+||+++|++|+
T Consensus 485 ~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~ 564 (806)
T 3cf2_A 485 VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFD 564 (806)
T ss_dssp HHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCeEEEEccccccccc
Q 007764 569 KARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 569 ~Ar~~~p~vlf~DEid~l~~~ 589 (590)
.||+.+||||||||||++++.
T Consensus 565 ~Ar~~~P~IifiDEiDsl~~~ 585 (806)
T 3cf2_A 565 KARQAAPCVLFFDELDSIAKA 585 (806)
T ss_dssp HHHTTCSEEEECSCGGGCC--
T ss_pred HHHHcCCceeechhhhHHhhc
Confidence 999999999999999999863
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=4.9e-85 Score=745.35 Aligned_cols=577 Identities=81% Similarity=1.308 Sum_probs=530.4
Q ss_pred CCCCcchhHHhhhcCCCCeEEEccccCCCCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCCCCCeEEeCH
Q 007764 12 GTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNK 91 (590)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (590)
.++++++|||++.+|.||+|+|+++.+++.++|+|+|++|++||+.+||+|+|+|++++.+++.+|++++++.+.|+|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (806)
T 1ypw_A 7 SKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNR 86 (806)
T ss_dssp ----------CCCCCCTTEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEECCH
T ss_pred ccccccchhHHhccCCCceEEEccCcCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEecCCCCCCCeEEecH
Confidence 34478999999999999999999999888899999999999999999999999999877889999998888999999999
Q ss_pred HHHhhccccCCCeEEEEEccccCCCceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEE
Q 007764 92 VVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVI 171 (590)
Q Consensus 92 ~~r~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 171 (590)
.+|.|+|+++||.|+|+++..+++|++|++.|...++.++.+.+++.+++++|...++||.+|++|.+...+..+.|+|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 166 (806)
T 1ypw_A 87 VVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVV 166 (806)
T ss_dssp HHHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEE
T ss_pred HHHhhcCCCCCCEEEEEECCCCCcCcEEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEE
Confidence 99999999999999999986788999999999987776666666777999999877899999999999888889999999
Q ss_pred EeCCCCeEEecCCceEEecCCCcccccc-ccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECC
Q 007764 172 ETDPPEYCVVAPDTEIFCEGEPVRREDE-NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGP 250 (590)
Q Consensus 172 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~Gp 250 (590)
+++|.+.++++++|.+.+.+.+..+... ...+.++|++|+|+++++++|++++.+|+.+|+++.++++.++.++||+||
T Consensus 167 ~~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp 246 (806)
T 1ypw_A 167 ETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246 (806)
T ss_dssp EETTTTCCBCCSSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSC
T ss_pred eccCCCCceecCCeEEEecCccccchhhhcccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECc
Confidence 9999999999999999988777654432 356789999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHH
Q 007764 251 PGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (590)
Q Consensus 251 pGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~ 330 (590)
||||||++|++++++++.+++.+++.++.+.+.++.+..++.+|+.+..+.|+++|+||+|.++++++...++...++..
T Consensus 247 ~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 326 (806)
T 1ypw_A 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVS 326 (806)
T ss_dssp TTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777888899999
Q ss_pred HHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCC
Q 007764 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 410 (590)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~ 410 (590)
+|+.++++...+..+++|++||+++.+|+++++++||+..+.++.|+.++|.+|++.+++.+.+..+.++..++..++||
T Consensus 327 ~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~ 406 (806)
T 1ypw_A 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406 (806)
T ss_dssp HHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSC
T ss_pred HHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCc
Confidence 99999999999899999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccccccccCCcccccccccchhh
Q 007764 411 VGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVK 490 (590)
Q Consensus 411 ~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~~~~iggl~~vk 490 (590)
+++++..++.+++..++++....+...+..+..+......++.+++..++....|+..++...+.+.+.|++++|++++|
T Consensus 407 ~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk 486 (806)
T 1ypw_A 407 VGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVK 486 (806)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHH
T ss_pred chHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhh
Confidence 99999999999999998887776666555555555667778899999999999999888888999999999999999999
Q ss_pred hcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHH
Q 007764 491 RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA 570 (590)
Q Consensus 491 ~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~A 570 (590)
+.|.+.+.|++.+++.+.++++.++.++|||||||||||+|||++|++++.+|+.++++++.++|+|++++.++.+|+.|
T Consensus 487 ~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a 566 (806)
T 1ypw_A 487 RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566 (806)
T ss_dssp HHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHH
T ss_pred hhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCeEEEEcccccccc
Q 007764 571 RQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 571 r~~~p~vlf~DEid~l~~ 588 (590)
+...||||||||||++.+
T Consensus 567 ~~~~p~vl~iDEid~l~~ 584 (806)
T 1ypw_A 567 RQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp HHHCSBCCCCSSHHHHCC
T ss_pred HhcCCeEEEEEChhhhhh
Confidence 999999999999999864
No 3
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.8e-68 Score=574.80 Aligned_cols=480 Identities=78% Similarity=1.253 Sum_probs=420.7
Q ss_pred CccCCCCcchhHHhhhcCCCCeEEEccccCCCCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCCCCCeEE
Q 007764 9 DAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIR 88 (590)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~ 88 (590)
+...++++++|||++.+|.||+|+|+++.++++++|||||++|++||+.+||+|+|+|++++.++||+|++++++++.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~ 83 (489)
T 3hu3_A 4 GADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIR 83 (489)
T ss_dssp -------------CCCCCCTTEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEE
T ss_pred cccccccccchhhhhcccCCCeeEEccCCCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEeeCCCCCCCEEE
Confidence 34456778999999999999999999999888999999999999999999999999999888999999999889999999
Q ss_pred eCHHHHhhccccCCCeEEEEEccccCCCceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEE
Q 007764 89 MNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEF 168 (590)
Q Consensus 89 ~~~~~r~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 168 (590)
||+.+|+|+|+++||.|+|+++..+++|++|++.|+..++..+....++.+.+++.....+++..|+.+.+.+..+.+.|
T Consensus 84 ~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (489)
T 3hu3_A 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEF 163 (489)
T ss_dssp CCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEE
T ss_pred ecHHHHhhcCCCCCCEEEEEECCCCCccCEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEE
Confidence 99999999999999999999987899999999999988877776777888889998777788889999999988899999
Q ss_pred EEEEeCCCCeEEecCCceEEecCCCcccccc-ccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEE
Q 007764 169 KVIETDPPEYCVVAPDTEIFCEGEPVRREDE-NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 247 (590)
Q Consensus 169 ~v~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL 247 (590)
+++..+|...+.++++|.+.+.+++..+... .....++|++|+|+++++++|++++..++.+|+++..++..++.++||
T Consensus 164 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL 243 (489)
T 3hu3_A 164 KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243 (489)
T ss_dssp EEEEEESSSEEEECTTCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEE
T ss_pred EEEeecCCCceEEcCCeEEEEccCcccccccccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEE
Confidence 9999999999999999999988777654321 234678999999999999999999999999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHH
Q 007764 248 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (590)
Q Consensus 248 ~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~ 327 (590)
+||||||||++|++++++++.+|+.++++++.+.+.|+.+..++.+|+.+....|++|||||+|.+.++++...++...+
T Consensus 244 ~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~ 323 (489)
T 3hu3_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (489)
T ss_dssp ECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777788899
Q ss_pred HHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhc
Q 007764 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDT 407 (590)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t 407 (590)
+..+|+.+|++.....++++|++||+++.+++++++++||+..++++.|+.++|.+||+.+++.+.+..+.++..++..+
T Consensus 324 ~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t 403 (489)
T 3hu3_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403 (489)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTC
T ss_pred HHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHc
Confidence 99999999999888889999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccccccccCCcccccccccc
Q 007764 408 HGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLE 487 (590)
Q Consensus 408 ~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~~~~iggl~ 487 (590)
+||+++++..+|.+|+..++++..+.++.++..+..+......++.++|..++...+|+.+++..+++|+++|+||||..
T Consensus 404 ~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred cCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 99999999999999999999998877777666666666677889999999999999999999999999999999999976
Q ss_pred h
Q 007764 488 N 488 (590)
Q Consensus 488 ~ 488 (590)
+
T Consensus 484 ~ 484 (489)
T 3hu3_A 484 H 484 (489)
T ss_dssp -
T ss_pred c
Confidence 4
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-47 Score=392.19 Aligned_cols=248 Identities=43% Similarity=0.782 Sum_probs=231.1
Q ss_pred ccCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 007764 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (590)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~ 279 (590)
.+.|+++|+||||++++++.|++.+.+|+++|++|.++|+.+++|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---hHHHHHHHHHHHhhhccccCCeEEEEeecCCCCC
Q 007764 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 356 (590)
Q Consensus 280 ~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ 356 (590)
++|.|+++..++.+|..|+...||||||||+|.+++++....+ ....+++.+|++.||++....+|+||+|||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 9999999999999999999999999999999999998764432 2346788999999999999999999999999999
Q ss_pred CchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Q 007764 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (590)
Q Consensus 357 ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (590)
||+|++|||||++.|+++.|+.++|.+||+.|++++++..++++..+|..|+||+|+|+..+|++|++.++++..
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~----- 374 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR----- 374 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred chhhhhHHHhhhhhccHHHHHhhhcCCC
Q 007764 437 EDETIDAEILNSMAVTDEHFKTALGTSN 464 (590)
Q Consensus 437 ~~~~i~~~~~~~~~v~~~~~~~al~~~~ 464 (590)
..++.+||..|+..+.
T Consensus 375 ------------~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 375 ------------IHVTQEDFELAVGKVM 390 (405)
T ss_dssp ------------SBCCHHHHHHHHHHHH
T ss_pred ------------CCcCHHHHHHHHHHHh
Confidence 3477888888886653
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-46 Score=383.35 Aligned_cols=249 Identities=45% Similarity=0.742 Sum_probs=231.3
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+.++++|+||||++++++.|++.+.+|+++|++|..+|+.+++++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|+++..++.+|..|+...||||||||+|.++.++.... .....+.+.+|++.+|+.....+++||+|||+|+.|
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 99999999999999999999999999999999999885433 223467788999999999998999999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|+|++|+|||++.|+++.|+.++|.+||+.|++++++..++++..+|..|+||+|+|+.++|.+|++.++++..
T Consensus 335 DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~------ 408 (437)
T 4b4t_I 335 DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR------ 408 (437)
T ss_dssp CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCCCCC
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTSNPS 466 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~~p~ 466 (590)
..++.+||..|+..+.++
T Consensus 409 -----------~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 409 -----------MQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp -----------SCBCHHHHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHHhCC
Confidence 346788888888766543
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-45 Score=382.26 Aligned_cols=251 Identities=38% Similarity=0.668 Sum_probs=234.0
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..+.++|+||||++++++.|++.+.+|+.+|++|.++|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchh---HHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|+++..++.+|..|+...||||||||+|.+++++...... ...+.+.+|++.||++....+|+||+|||+|+.|
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999999988654332 3456778899999999998999999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|++++|+|||++.|+++.|+.++|.+||+.+++++++..++++..+|..|+||+|+|+.++|.+|++.++++..
T Consensus 334 D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~------ 407 (434)
T 4b4t_M 334 DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ------ 407 (434)
T ss_dssp CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCCCCCcc
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~ 468 (590)
..++.+||..|+..+.|+..
T Consensus 408 -----------~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 408 -----------SSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp -----------SSBCHHHHHHHHHSCSSSCC
T ss_pred -----------CCcCHHHHHHHHHHHhCCCC
Confidence 34788999999999887643
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-45 Score=383.37 Aligned_cols=249 Identities=40% Similarity=0.728 Sum_probs=230.8
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+.++++|+||||++++++.|++.+.+|+++|++|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|+++..++.+|..|+...||||||||+|.+++++.... +....+.+.+|++.||++....+++||+|||+|+.|
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999998875432 233466788999999999998899999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|++++|+|||++.|+++.|+.++|.+||+.|+++++...++++..+|..|+||+|+|+..+|.+|++.++++..
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~------ 407 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR------ 407 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCCCCC
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTSNPS 466 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~~p~ 466 (590)
..++.+||..|+..+.++
T Consensus 408 -----------~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 -----------DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -----------SSBCHHHHHHHHHHHHHT
T ss_pred -----------CCCCHHHHHHHHHHHHhc
Confidence 246788888888766543
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-44 Score=377.94 Aligned_cols=246 Identities=42% Similarity=0.726 Sum_probs=228.4
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+.|+++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---hHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|+++..++.+|..|+...||||||||+|.++..+....+ ....+.+.++++.||+.....+|+||+|||+|+.|
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 999999999999999999999999999999999998865432 23456778899999999988999999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|++++|+|||++.|+++.|+.++|.+||+.|++++++..++++..+|..|+||+|+|+.++|++|++.++++..
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~------ 435 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------ 435 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCC
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~ 463 (590)
..++.+||..|+..+
T Consensus 436 -----------~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 436 -----------KVATEKDFLKAVDKV 450 (467)
T ss_dssp -----------SSBCHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 246777888877654
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-44 Score=373.21 Aligned_cols=245 Identities=42% Similarity=0.685 Sum_probs=228.9
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
+.++++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|+|||||||||||++|+++|++++.+++.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|+++..++.+|..|+...|||+||||+|.++..+... .+....+++.+|++.||++....+++||+|||+|+.|
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999887443 2334578899999999999999999999999999999
Q ss_pred chhhhccCCCceEEEec-CCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Q 007764 358 DPALRRFGRFDREIDIG-VPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~-~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (590)
|++++|+|||++.|++| .|+..+|..||+.+++++++..++++..+|..|+||+|+|+.++|++|++.++++..
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~----- 399 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR----- 399 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----
Confidence 99999999999999996 899999999999999999999999999999999999999999999999999987642
Q ss_pred chhhhhHHHhhhhhccHHHHHhhhcC
Q 007764 437 EDETIDAEILNSMAVTDEHFKTALGT 462 (590)
Q Consensus 437 ~~~~i~~~~~~~~~v~~~~~~~al~~ 462 (590)
..++.+||..|+..
T Consensus 400 ------------~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 400 ------------YVILQSDLEEAYAT 413 (428)
T ss_dssp ------------SSBCHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHH
Confidence 34678889888764
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3e-41 Score=377.78 Aligned_cols=268 Identities=40% Similarity=0.711 Sum_probs=198.0
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..+.++|+++||+++.++.|++.+.+|+++|+.|.++|+.+++++|||||||||||++|+++|.+++.+|+.++++++++
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
+|.|++++.++.+|+.|+...||||||||+|.+++.|+.. .+...++++++|+++||++....+|+||||||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 9999999999999999999999999999999999988643 2345678999999999999999999999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|++++|+|||++.|+++.|+.++|.+||+.+++++++..++++..+|+.|+||+|+|+..+|++|++.++++..+.....
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~ 709 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 709 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998865422111
Q ss_pred hhh--h------hHHHhhhhhccHHHHHhhhcCCCCCcc
Q 007764 438 DET--I------DAEILNSMAVTDEHFKTALGTSNPSAL 468 (590)
Q Consensus 438 ~~~--i------~~~~~~~~~v~~~~~~~al~~~~p~~~ 468 (590)
... . .........++.+||..|+..++|+..
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 710 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp ------------------CCC----CCTTTC--------
T ss_pred hhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 000 0 001112345889999999999988743
No 11
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=100.00 E-value=8.1e-38 Score=294.29 Aligned_cols=201 Identities=70% Similarity=1.247 Sum_probs=163.1
Q ss_pred CCCCcchhHHhhhcCCCCeEEEccccCCCCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCCCCCeEEeCH
Q 007764 12 GTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNK 91 (590)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (590)
.++++++||||+.+|.||+|+|+++.++++++|+|+|++|++|||.+||+|+|+|++++.++|++|+.++++.+.|+|++
T Consensus 10 ~~~~~~~~~~~~~~~~p~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~ 89 (211)
T 3qwz_A 10 SKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSDDTCSDEKIRMNR 89 (211)
T ss_dssp ----------------CEEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECSTTCEEEEEEEECTTSCTTEEEECH
T ss_pred ccccccchhhhhcccCCCeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCCCCcEEEEEEeCCCCCCCEEEeCH
Confidence 44578999999999999999999999988999999999999999999999999999888999999998899999999999
Q ss_pred HHHhhccccCCCeEEEEEccccCCCceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEE
Q 007764 92 VVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVI 171 (590)
Q Consensus 92 ~~r~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 171 (590)
.+|+|+|+++||.|+|+++..+++|++|+++|...++.++.++++..+|++||.+.++||.+||.|.+...++.++|+|+
T Consensus 90 ~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv 169 (211)
T 3qwz_A 90 VVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVV 169 (211)
T ss_dssp HHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEE
T ss_pred HHHhhcCCCCCCEEEEEECCCCCCceEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEE
Confidence 99999999999999999976789999999999987766666777889999999877899999999999888889999999
Q ss_pred EeCCCCeEEecCCceEEecCCCcccccc-ccCCCCCcccccc
Q 007764 172 ETDPPEYCVVAPDTEIFCEGEPVRREDE-NRLDEVGYDDVGG 212 (590)
Q Consensus 172 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~i~G 212 (590)
+++|.++++++++|.|.+.++|..+++. ..++.++|+||||
T Consensus 170 ~t~P~g~viV~~~T~I~~~~~pv~~~~~e~~~~~VtYeDIGG 211 (211)
T 3qwz_A 170 ETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 211 (211)
T ss_dssp EEESSSEEEECTTCEEECCSCCBCCCGGGSCCC---------
T ss_pred eecCCCCEEECCCcEEEEcCcccccccccccCCCcceeCCCC
Confidence 9999999999999999999999887542 3678899999998
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.4e-37 Score=305.78 Aligned_cols=262 Identities=40% Similarity=0.708 Sum_probs=215.0
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
.+.++|+||||++++++.|++.+.+|+.+++.+.++++..+++++|+||||||||||++++|++++..++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhh
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al 361 (590)
+.++.+..++.+|+.+....|+++|+||+|.++..+.........++.++++..|++...+..++++++||+|+.+|+++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 99999999999999998889999999999998876543222233466788999999888888899999999999999999
Q ss_pred hccCCCceEEEecCCCHHHHHHHHHHHhcC---CCCCCccCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhccccccc
Q 007764 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKN---MKLSDDVDLERIAKDT--HGYVGADLAALCTEAALQCIREKMDVIDL 436 (590)
Q Consensus 362 ~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~---~~~~~~~~l~~la~~t--~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (590)
+|+|||++.|+++.|+.++|.+||+.+++. .++..++++..++..+ +||+|+|+..+|++|++.++++.......
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~ 243 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998853 4566789999999975 59999999999999999998775432110
Q ss_pred chhhhhHHHhhhhhccHHHHHhhhcCCCCCccc
Q 007764 437 EDETIDAEILNSMAVTDEHFKTALGTSNPSALR 469 (590)
Q Consensus 437 ~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~ 469 (590)
........++.+||..|+..++|+...
T Consensus 244 ------~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 244 ------GNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp ------------CCBCHHHHHHHHTTCCCCC--
T ss_pred ------cccccCCeecHHHHHHHHHHhcCCCCh
Confidence 111234579999999999999998654
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-35 Score=299.70 Aligned_cols=263 Identities=34% Similarity=0.616 Sum_probs=227.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFFFCINGPEIMS 280 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-~~~~~~v~~~~l~~ 280 (590)
.+.++|+||+|++++++.|++.+.+|+++|+++.. +..+++++|||||||||||++|+++|+++ +.+++.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 46789999999999999999999999999999875 35778999999999999999999999999 88999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc-CCeEEEEeecCCCCCCch
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDP 359 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~~tn~~~~ld~ 359 (590)
++.|+.+..++.+|+.+....|++|||||+|.+++.+.........++..+++..++++.. ..++++|++||+++.+|+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 9999999999999999999999999999999999988776667778899999999998763 568999999999999999
Q ss_pred hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc-
Q 007764 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE- 437 (590)
Q Consensus 360 al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~- 437 (590)
+++| ||+..++++.|+.++|.+|++.+++..+.. .+.++..++..++||+|+|+..+|++|++.++++......+.
T Consensus 165 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 165 AIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred HHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999 999999999999999999999998877654 567899999999999999999999999999888754211000
Q ss_pred -------------------------------hhhhhHHHhhhhhccHHHHHhhhcCCCCCc
Q 007764 438 -------------------------------DETIDAEILNSMAVTDEHFKTALGTSNPSA 467 (590)
Q Consensus 438 -------------------------------~~~i~~~~~~~~~v~~~~~~~al~~~~p~~ 467 (590)
...+..+......++.+||..|+..++|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~ 303 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTV 303 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSC
T ss_pred hccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCC
Confidence 001111112234689999999999998864
No 14
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=100.00 E-value=3.3e-35 Score=271.65 Aligned_cols=181 Identities=71% Similarity=1.242 Sum_probs=152.1
Q ss_pred CCCCcchhHHhhhcCCCCeEEEccccCCCCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCCCCCeEEeCH
Q 007764 12 GTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNK 91 (590)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (590)
.++++++||||+.+|.||+|+|+++.++++++|+|+|++|++||+.+||+|+|+|++++.++|++|+.++++.+.|+||+
T Consensus 7 ~~~~~~~~~~~~~~~~p~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~ 86 (187)
T 3tiw_A 7 TKSDDLSTAILKQKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNR 86 (187)
T ss_dssp ---------------CCCEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEEECH
T ss_pred ccccccchhhhhcccCCCeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECCCCCeEEEEEEECCCCCCCEEEeCH
Confidence 44578999999999999999999999988999999999999999999999999999888999999998889999999999
Q ss_pred HHHhhccccCCCeEEEEEccccCCCceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEE
Q 007764 92 VVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVI 171 (590)
Q Consensus 92 ~~r~~~~~~~~~~v~i~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 171 (590)
.+|+|+|+++||.|+|+++..+++|++|+++|...++.++.++++..+|++||.+.++||.+||.|.+...++.++|+|+
T Consensus 87 ~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv 166 (187)
T 3tiw_A 87 VVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVV 166 (187)
T ss_dssp HHHHHTTCCTTCEEEEEECTTCEECSEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEE
T ss_pred HHHhhcCCCCCCEEEEEECCCCCCceEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEE
Confidence 99999999999999999976789999999999987766566677889999999877899999999999888889999999
Q ss_pred EeCCCCeEEecCCceEEecCC
Q 007764 172 ETDPPEYCVVAPDTEIFCEGE 192 (590)
Q Consensus 172 ~~~~~~~~~~~~~t~~~~~~~ 192 (590)
+++|.++++++++|.|.|+|+
T Consensus 167 ~t~P~~~v~V~~~T~I~~eg~ 187 (187)
T 3tiw_A 167 ETDPSPYCIVAPDTVIHCEGE 187 (187)
T ss_dssp EEESSSEEECCTTCEEECCC-
T ss_pred EecCCCCEEECCCcEEEecCC
Confidence 999999999999999998763
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4.8e-35 Score=297.75 Aligned_cols=267 Identities=40% Similarity=0.727 Sum_probs=229.0
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..+.++|++|+|++++++.|++++.+|+.+|+.+.++++.++.++||+||||||||++|++++++++.+++.++++++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
.+.|+.+..++.+|+.+....|++|||||+|.+.+.++.. .+....++..+|+..++++....++++|++||+++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 9999999999999999999999999999999998765321 1223456778899999988777889999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
|+++.|+|||+..++++.|+.++|.+|++.+++...+..+.++..++..++||+|+|+..+|.+|...++++........
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999988888888999999999999999999999999988877653211000
Q ss_pred hhh-------hhH-HHhhhhhccHHHHHhhhcCCCCCc
Q 007764 438 DET-------IDA-EILNSMAVTDEHFKTALGTSNPSA 467 (590)
Q Consensus 438 ~~~-------i~~-~~~~~~~v~~~~~~~al~~~~p~~ 467 (590)
... .+. .......++.+||..|+...+|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 000 000 001124689999999999988764
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=5.8e-34 Score=292.67 Aligned_cols=267 Identities=36% Similarity=0.635 Sum_probs=225.9
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..++++|++++|++++++.|++++.+|+.+|+++.. +..++.++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 347789999999999999999999999999999876 4577899999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-cCCeEEEEeecCCCCCCch
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDP 359 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v~vI~~tn~~~~ld~ 359 (590)
.+.|+.+..++.+|..+....|++|||||+|.+.+.+.........++..+++..+++.. ....+++|++||+++.+|+
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~ 169 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCH
Confidence 999999999999999999999999999999999988765555566788899999999875 4568999999999999999
Q ss_pred hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccch
Q 007764 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438 (590)
Q Consensus 360 al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 438 (590)
+++| ||+..++++.|+.++|.+|++.+++..... .+.++..++..++||+++|+..+|++|.+.++++.........
T Consensus 170 al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~ 247 (322)
T 3eie_A 170 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247 (322)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEE
T ss_pred HHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999 999999999999999999999998877654 5678999999999999999999999999988887643321110
Q ss_pred --------------------------hhhhHHHhhhhhccHHHHHhhhcCCCCCcccc
Q 007764 439 --------------------------ETIDAEILNSMAVTDEHFKTALGTSNPSALRE 470 (590)
Q Consensus 439 --------------------------~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~ 470 (590)
..+..+......++.+||..|+...+|+...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~ 305 (322)
T 3eie_A 248 VSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED 305 (322)
T ss_dssp CC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTT
T ss_pred hccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHH
Confidence 00111111235699999999999998876543
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.9e-33 Score=292.21 Aligned_cols=265 Identities=36% Similarity=0.624 Sum_probs=219.1
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
.+.++|++|+|++++++.|++.+.+|+.+|+++.. +..++.++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 46789999999999999999999999999999976 56788999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc-CCeEEEEeecCCCCCCchh
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPA 360 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~~tn~~~~ld~a 360 (590)
+.|+.+..++.+|..+....|+||||||+|.+.+.+.........++..+|+..+++... ...+++|++||+++.+|++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 999999999999999999999999999999999887665666778889999999998754 4679999999999999999
Q ss_pred hhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc--
Q 007764 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE-- 437 (590)
Q Consensus 361 l~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~-- 437 (590)
++| ||+..++++.|+.++|.+|++.+++..+.. .+.++..++..++||+++|+..+|.+|.+.++++......+.
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 281 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999 999999999999999999999998877653 567899999999999999999999999999987643211000
Q ss_pred ------------------------hhhhhHHHhhhhhccHHHHHhhhcCCCCCccc
Q 007764 438 ------------------------DETIDAEILNSMAVTDEHFKTALGTSNPSALR 469 (590)
Q Consensus 438 ------------------------~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~ 469 (590)
-..+..+......++.+||..|+..++|+...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~ 337 (355)
T 2qp9_X 282 STEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE 337 (355)
T ss_dssp CC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCH
T ss_pred ccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCH
Confidence 00111111223568999999999999887543
No 18
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2.3e-33 Score=299.16 Aligned_cols=227 Identities=47% Similarity=0.794 Sum_probs=205.3
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
+.++|+||+|++++++.+++++.. +.+|..+.+++...++++||+||||||||++|++++++++.+++.++++++...+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 567999999999999999999876 6788999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCch
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~ 359 (590)
.|....+++.+|..+....|+||||||+|.+..+++.. ......+.+++|+..++++....+++||++||+++.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999999877532 122345678899999998877778999999999999999
Q ss_pred hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 007764 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (590)
Q Consensus 360 al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (590)
++.|+|||++.+.++.|+.++|.+|++.+++..++..+.++..++..+.||+|+|+.++|.+++..+.++.
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~ 240 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG 240 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999888888899999999999999999999999998877654
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.8e-32 Score=293.18 Aligned_cols=264 Identities=34% Similarity=0.617 Sum_probs=217.4
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFFFCINGPEIM 279 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-~~~~~~v~~~~l~ 279 (590)
..++++|++|+|++++++.|++.+.+|+.+|++|.. +..++.++||+||||||||++|+++|+++ +.+++.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 346789999999999999999999999999998864 34677999999999999999999999999 8899999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc-CCeEEEEeecCCCCCCc
Q 007764 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSID 358 (590)
Q Consensus 280 ~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~~tn~~~~ld 358 (590)
+.+.|+.+..++.+|..+....|+||||||+|.+++.+.........++.++|+..+++... ..+++||++||+++.+|
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 99999999999999999999999999999999999887766666778899999999998753 56899999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-CCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
++++| ||+..++++.|+.++|..|++.++...+. ..+.++..++..+.||+|+|+..+|++|.+.++++......+.
T Consensus 286 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~ 363 (444)
T 2zan_A 286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 363 (444)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred HHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999 99999999999999999999999887764 3567899999999999999999999999999888753211000
Q ss_pred h--------------------------------hhhhHHHhhhhhccHHHHHhhhcCCCCCc
Q 007764 438 D--------------------------------ETIDAEILNSMAVTDEHFKTALGTSNPSA 467 (590)
Q Consensus 438 ~--------------------------------~~i~~~~~~~~~v~~~~~~~al~~~~p~~ 467 (590)
. ..+..+......++.+||..|+..++|+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~ 425 (444)
T 2zan_A 364 KVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTV 425 (444)
T ss_dssp EECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSC
T ss_pred hhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCC
Confidence 0 00111111234689999999999998864
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.98 E-value=4.4e-31 Score=266.51 Aligned_cols=231 Identities=55% Similarity=0.926 Sum_probs=209.3
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..+.++|++++|++++++.|++++..++.+++.+..+++.++.++||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---hHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCC
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~l 357 (590)
.+.+..+..++.+|..+....|++|||||+|.+.+++..... ....+.+.+++..+++.....++++|++||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 999999999999999999999999999999999877654322 22344556666667776777789999999999999
Q ss_pred chhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Q 007764 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (590)
Q Consensus 358 d~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (590)
++++.|++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.||+++++..+|..|...++.+..
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~ 243 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR 243 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999988888888999999999999999999999999998877653
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=2e-30 Score=257.74 Aligned_cols=243 Identities=42% Similarity=0.706 Sum_probs=209.3
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
.+..+|++++|++++++.+++++.. +.+++.+..++...+.+++|+||||||||++|+++++.++.+++.+++.++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 3567899999999999999998876 778888888888999999999999999999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCc
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld 358 (590)
+.+..+..++.+|+.+....|+++|+||+|.+...++... .....+.+.+++..+++.....++++|++||+++.+|
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 8999999999999999988899999999999988765321 2233467788889999887778899999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccch
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 438 (590)
+++.|++||++.+.++.|+.++|.+|++.+.+.+++..+.++..++..+.||+++++..+|.++...+.++..
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~------- 237 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK------- 237 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-------
Confidence 9999999999999999999999999999999888888888899999999999999999999999988776532
Q ss_pred hhhhHHHhhhhhccHHHHHhhhcC
Q 007764 439 ETIDAEILNSMAVTDEHFKTALGT 462 (590)
Q Consensus 439 ~~i~~~~~~~~~v~~~~~~~al~~ 462 (590)
..++.+++..++..
T Consensus 238 ----------~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 238 ----------RVVSMVEFEKAKDK 251 (257)
T ss_dssp ----------SSBCHHHHHHHHHH
T ss_pred ----------CcccHHHHHHHHHH
Confidence 24566777766654
No 22
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=1.2e-31 Score=287.53 Aligned_cols=227 Identities=44% Similarity=0.757 Sum_probs=204.8
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
+.++|+|++|+++++..+++++.. +.++..+.++++..+++++|+||||||||+|+++++++++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 578899999999999999998876 6778889999999999999999999999999999999999999999999999988
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCch
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~ 359 (590)
.+.....++.+|+.+....|+++||||+|.+...++.. ......+.+++++..|++......++++++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99988999999999987889999999999998766532 123345677889999998887778999999999999999
Q ss_pred hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 007764 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (590)
Q Consensus 360 al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (590)
++.|++||++.+.++.|+.++|.+||+.+++..++..+.++..++..+.||+|+|+.++|.+++..+.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~ 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998888888999999999999999999999999998776543
No 23
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.97 E-value=1.1e-30 Score=298.70 Aligned_cols=341 Identities=22% Similarity=0.318 Sum_probs=227.7
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v 273 (590)
+-.++++.|.+++++.+.+.+.. ..+.++||+||||||||++++++++.+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34678899999999998887753 246789999999999999999999986 5667777
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeec
Q 007764 274 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (590)
Q Consensus 274 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~t 351 (590)
+...+. .++.|+.+..++.+|+.+....+++|||||++.+.+.+....+.. . ..+.+..+..+..+.+|++|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~--~----~~~~L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV--D----AANLIKPLLSSGKIRVIGST 322 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH--H----HHHHHSSCSSSCCCEEEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchH--H----HHHHHHHHHhCCCeEEEEEe
Confidence 777766 467889999999999999887789999999999987665432221 1 22344444456678888988
Q ss_pred CCCC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC------CCCCCccCHHHHHHhcCCC-----CHHHH
Q 007764 352 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN------MKLSDDVDLERIAKDTHGY-----VGADL 415 (590)
Q Consensus 352 n~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~------~~~~~~~~l~~la~~t~g~-----~~~dl 415 (590)
+.++ .+|+++.+ ||. .+.++.|+.+++.+|++.+... ..+ .+..+..++..+.+| ....+
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~-~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRY-TAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhcccccCchHH
Confidence 8643 56888988 896 6999999999999999876543 222 222355555555543 33455
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHhhhcCCCCCcccccccccCCcccccccccchhhhcccc
Q 007764 416 AALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQE 495 (590)
Q Consensus 416 ~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~~~~~v~~~~iggl~~vk~~L~~ 495 (590)
..++.++.......... .....++.+++..++.... .+....+.|++...+..+++.|.+
T Consensus 399 i~lld~a~~~~~~~~~~-------------~~~~~v~~~di~~~~~~~~-------~ip~~~~~~~~~~~l~~l~~~l~~ 458 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVS-------------KRKKTVNVADIESVVARIA-------RIPEKSVSQSDRDTLKNLGDRLKM 458 (758)
T ss_dssp HHHHHHHHHHHHHSSSC-------------CCCCSCCHHHHHHHHHHHS-------CCCCCCSSSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccc-------------ccCCccCHHHHHHHHHHhc-------CCCccccchhHHHHHHHHHHHHHh
Confidence 56666654332211000 0112355566665554321 011224445544444444444433
Q ss_pred eeecccCChh------hhhhcCC----CCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh-----------
Q 007764 496 TVQYPVEHPE------KFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM----------- 554 (590)
Q Consensus 496 ~v~~~~~~~~------~~~~~~~----~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~----------- 554 (590)
.+...-...+ ...+.|+ +|..++||+||||||||++|+++|..++.+|+.++++++..+
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~ 538 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCS
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCC
Confidence 2222111110 1112233 344579999999999999999999999999999999998764
Q ss_pred -hccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 555 -WFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 555 -~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
|+|..+. +.++...+..+++||||||||++++.
T Consensus 539 g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~~ 572 (758)
T 1r6b_X 539 GYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHPD 572 (758)
T ss_dssp CSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCHH
T ss_pred CCcCcccc--chHHHHHHhCCCcEEEEeCccccCHH
Confidence 6665443 34566667778899999999999875
No 24
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-31 Score=277.47 Aligned_cols=127 Identities=43% Similarity=0.826 Sum_probs=121.2
Q ss_pred CCCCcccccccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc
Q 007764 463 SNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 542 (590)
Q Consensus 463 ~~p~~~~~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~ 542 (590)
..|........+.|+++|+||||++++|++|++.|.||+.|++.|.++|+.|++|+|||||||||||+||||+|++++.+
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 44566666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 543 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 543 ~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
|+.+++++++++|+|++|+.+|++|+.|+..+||||||||||++++.
T Consensus 210 f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~ 256 (405)
T 4b4t_J 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGST 256 (405)
T ss_dssp EEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTS
T ss_pred ceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccC
Confidence 99999999999999999999999999999999999999999999863
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=3.5e-29 Score=248.32 Aligned_cols=227 Identities=44% Similarity=0.757 Sum_probs=198.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
.+..+|++++|+++.+..++++... +.++..+.++++..+++++|+|||||||||+++++++.++..++.+++.++...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 4678999999999999999988765 567788889999989999999999999999999999999999999999999888
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCc
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld 358 (590)
+.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+.+++..+++......++++++||+|+.+|
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld 168 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 168 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCC
Confidence 888888889999999987789999999999987665421 12234566788888888877777889999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (590)
+++.|++||+..++++.|+.++|.+|++.+.+.+++..+.++..++..+.||+++|+..+|.+++..+.++
T Consensus 169 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888888899999999999999999999999998877654
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=1.7e-29 Score=256.39 Aligned_cols=260 Identities=38% Similarity=0.589 Sum_probs=214.2
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
.++.+|++++|++++++.|++++..|+.+|+++..++ .++.++||+||||||||++|++++++++.+++.++++++.+.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4678999999999999999999999999999887765 567899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccC---CeEEEEeecCCCCCCc
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR---AHVIVIGATNRPNSID 358 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~---~~v~vI~~tn~~~~ld 358 (590)
+.+..+..++.+|..+....|++|||||+|.+...+.........++..+++..+++.... ..+++|++||.++.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 9999999999999999999999999999999998776544444567778888888876543 4689999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
+++.+ ||+..++++.|+.++|..|++.+++..... .+.++..++..+.||+++++..+|++++..++++.......
T Consensus 174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~- 250 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK- 250 (297)
T ss_dssp HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc-
Confidence 99998 999999999999999999999887765432 45568899999999999999999999999888765321100
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCCCCCccc
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTSNPSALR 469 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~ 469 (590)
.. .......++.+||..++....|+...
T Consensus 251 --~~--~~~~~~~i~~~d~~~a~~~~~~s~~~ 278 (297)
T 3b9p_A 251 --CL--DISAMRAITEQDFHSSLKRIRRSVAP 278 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSCCCSSCH
T ss_pred --cc--cccccCCcCHHHHHHHHHHcCCCCCH
Confidence 00 00112458899999999999887644
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=250.58 Aligned_cols=227 Identities=41% Similarity=0.696 Sum_probs=181.3
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
++++|++++|+++.++.|++++.. +.+|+.+..+|+..+.++||+||||||||++|++++++++.+++.+++.++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 357899999999999999999887 7788888899999999999999999999999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc----hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCc
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH----GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~----~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld 358 (590)
.+.....++.+|+.+....|++|||||+|.+..++.... .......+.+++..+++......+++|++||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 888899999999999988999999999999987654321 1222345677777888776677899999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCcc--CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDV--DLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~--~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (590)
+++.|++||+..++++.|+.++|.+|++.+++......+. ....++..+.||+++++..+|.+++..+.++.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~ 233 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 233 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988776655443 34789999999999999999999987776543
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=4.1e-32 Score=309.50 Aligned_cols=231 Identities=45% Similarity=0.817 Sum_probs=206.6
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
.+.+.|++++|+++.++.|.+++.+|+.+++.+.++++.++.++||+||||||||++|+++|++++..++.++++++.++
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCc
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld 358 (590)
|.|+.+..++.+|+.++...|+++||||+|.++..+.... .....+++++|+..|++.....++++|+|||+++.+|
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 9999999999999999999999999999999998876432 3456788999999999988888999999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccc
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (590)
+++.|+|||+..++++.|+.++|.+||+.+++..++..+.++..++..+.||+++++..+|++|+..++++...
T Consensus 631 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~ 704 (806)
T 1ypw_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp CTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC--
T ss_pred HHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888899999999999999999999999999999887643
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.2e-29 Score=259.25 Aligned_cols=261 Identities=36% Similarity=0.609 Sum_probs=214.8
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..++.+|++|+|++++++.|++++.+|+.+|+++..++ .++.++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34678999999999999999999999999999887664 67789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc--CCeEEEEeecCCCCCCc
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPNSID 358 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--~~~v~vI~~tn~~~~ld 358 (590)
.+.|+.+..++.+|..+....|++|||||+|.+.+.+.........++..+++..+++... ..++++|++||+++.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 9999999999999999999999999999999999877655555667888889998887653 45799999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
+++++ ||+..++++.|+.++|.+++..+++..... .+.++..++..+.||+++++..+|.+++..++++......
T Consensus 236 ~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~-- 311 (357)
T 3d8b_A 236 EAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI-- 311 (357)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-----
T ss_pred HHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh--
Confidence 99999 999999999999999999999887665432 4567899999999999999999999999988876432110
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCCCCCccc
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTSNPSALR 469 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~ 469 (590)
..+. ......++.+||..++....|+...
T Consensus 312 -~~~~--~~~~~~i~~~d~~~al~~~~ps~~~ 340 (357)
T 3d8b_A 312 -ATIT--PDQVRPIAYIDFENAFRTVRPSVSP 340 (357)
T ss_dssp ----------CCCBCHHHHHHHHHHHGGGCCC
T ss_pred -cccc--ccccCCcCHHHHHHHHHhcCCCCCH
Confidence 0000 1123468899999999888776543
No 30
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.96 E-value=3.6e-29 Score=285.64 Aligned_cols=340 Identities=23% Similarity=0.323 Sum_probs=207.6
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v 273 (590)
+-.+++++|.+++++.+.+++.. ..+.++||+||||||||++|+++|+.+ +..++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 34678899999999999888754 234689999999999999999999997 6777877
Q ss_pred echhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCC
Q 007764 274 NGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (590)
Q Consensus 274 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~ 353 (590)
++ ..++.|+.+.+++.+|..+....++||||| . . ....+.|+. ...+..+.+|++||.
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~-~---------~~~~~~L~~----~l~~~~v~~I~at~~ 300 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-A---------IDASNILKP----SLARGELQCIGATTL 300 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CC----CTTSSSCEEEEECCT
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C-c---------hhHHHHHHH----HHhcCCEEEEeCCCh
Confidence 77 566788899999999999999899999999 0 0 011122332 334567899999998
Q ss_pred CC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCC-----ccCHHHHHHhcC-----CCCHHHHHHH
Q 007764 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD-----DVDLERIAKDTH-----GYVGADLAAL 418 (590)
Q Consensus 354 ~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~-----~~~l~~la~~t~-----g~~~~dl~~l 418 (590)
.+ .+|++++| || ..+.++.|+.+++.+||+.+...+.... +..+..++..++ ++.......+
T Consensus 301 ~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~l 377 (758)
T 3pxi_A 301 DEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (758)
T ss_dssp TTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHH
Confidence 88 78999999 99 5699999999999999997766543222 223455555444 3444555566
Q ss_pred HHHHHHHHHHhccc-ccccc--hhhhhH--------------H---------------------------HhhhhhccHH
Q 007764 419 CTEAALQCIREKMD-VIDLE--DETIDA--------------E---------------------------ILNSMAVTDE 454 (590)
Q Consensus 419 ~~~a~~~~~~~~~~-~~~~~--~~~i~~--------------~---------------------------~~~~~~v~~~ 454 (590)
+.+++......... ..... +..+.. + ......++.+
T Consensus 378 l~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 457 (758)
T 3pxi_A 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVD 457 (758)
T ss_dssp HHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTH
T ss_pred HHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHH
Confidence 66655433211110 00000 000000 0 0001122333
Q ss_pred HHHhhhcCCCC---Ccccc----cccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCC
Q 007764 455 HFKTALGTSNP---SALRE----TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCG 527 (590)
Q Consensus 455 ~~~~al~~~~p---~~~~~----~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtG 527 (590)
++...+..... ..+.. ........-..++.|++...+.+...+....... .-.-+|..++||+||||||
T Consensus 458 ~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~----~~~~~p~~~~Ll~Gp~GtG 533 (758)
T 3pxi_A 458 DIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGL----KDPKRPIGSFIFLGPTGVG 533 (758)
T ss_dssp HHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC----SCTTSCSEEEEEESCTTSS
T ss_pred HHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHccc----CCCCCCceEEEEECCCCCC
Confidence 33333222110 00000 0000111112445666666665555543211100 0012334479999999999
Q ss_pred hhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 528 KTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 528 KTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
||++|+++|..+ +.+|+.++++++...+... .+.++...+..+++||||||||++++.
T Consensus 534 KT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~ 594 (758)
T 3pxi_A 534 KTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAHPD 594 (758)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSCHH
T ss_pred HHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccCHH
Confidence 999999999998 6789999999998887665 345556667788899999999999875
No 31
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=7.5e-28 Score=241.95 Aligned_cols=226 Identities=44% Similarity=0.762 Sum_probs=197.3
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~ 282 (590)
+.++|++++|+++.++.++++... +..+..+.++++..+.+++|+||||||||||++++++.++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 678999999999999999988765 4667888888888889999999999999999999999999999999999988888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCch
Q 007764 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (590)
Q Consensus 283 ~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~ 359 (590)
.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+.+++..+++......+++++++|+|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 88888889999999988889999999999887654321 122335566778888887776677899999999999999
Q ss_pred hhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 007764 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (590)
Q Consensus 360 al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (590)
++.|++||+..++++.|+.++|.+||+.+.+...+..+.++..++..++||+++|+..+|.+++..+.++
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998888888889999999999999999999999998877654
No 32
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.6e-30 Score=263.51 Aligned_cols=119 Identities=44% Similarity=0.855 Sum_probs=115.2
Q ss_pred cccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 007764 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (590)
Q Consensus 471 ~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~e 550 (590)
...+.|+++|+||||++++|++|++.+.||+.|++.|.++|+.+++|+|||||||||||+||+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
++++|+|++|+.+|.+|+.|+..+||||||||||++++.
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~ 290 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK 290 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCC
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhccc
Confidence 999999999999999999999999999999999999763
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=5.4e-28 Score=254.75 Aligned_cols=259 Identities=36% Similarity=0.566 Sum_probs=205.1
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
..+.++|++|+|++.+++.|++++..++.+++++..++ .++.++||+||||||||++|+++|.+++.+++.+++.++.+
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34678899999999999999999999999999888776 45789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc--CCeEEEEeecCCCCCCc
Q 007764 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPNSID 358 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--~~~v~vI~~tn~~~~ld 358 (590)
.+.|+.+..++.+|..+....|++|||||+|.++..+.........++..+|+..+++... ...+++|++||+++.++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 9999999999999999999999999999999998877655555667888889999987765 45799999999999999
Q ss_pred hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Q 007764 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (590)
Q Consensus 359 ~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (590)
+++++ ||...++++.|+.++|.+|++.++...... .+.++..++..++||+++++..+|..++..++++........
T Consensus 267 ~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~ 344 (389)
T 3vfd_A 267 EAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN 344 (389)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---C
T ss_pred HHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 99999 999999999999999999999887664432 345788999999999999999999999998888753321100
Q ss_pred hhhhhHHHhhhhhccHHHHHhhhcCCCCCc
Q 007764 438 DETIDAEILNSMAVTDEHFKTALGTSNPSA 467 (590)
Q Consensus 438 ~~~i~~~~~~~~~v~~~~~~~al~~~~p~~ 467 (590)
. . ......++.+||..++....++.
T Consensus 345 ~---~--~~~~~~i~~~d~~~al~~~~~s~ 369 (389)
T 3vfd_A 345 M---S--ASEMRNIRLSDFTESLKKIKRSV 369 (389)
T ss_dssp C---S--SSCCCCCCHHHHHHHHHHCCCSS
T ss_pred c---c--hhhcCCcCHHHHHHHHHHcCCCC
Confidence 0 0 00123578889998888776654
No 34
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.1e-29 Score=263.23 Aligned_cols=124 Identities=43% Similarity=0.810 Sum_probs=117.8
Q ss_pred CCcccccccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEE
Q 007764 465 PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544 (590)
Q Consensus 465 p~~~~~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i 544 (590)
|........+.|+++|+||||+++++++|++.+.||+.|++.|.++|+.|++|+|||||||||||+|||++|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 44444456678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 545 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 545 ~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.+++++++++|+|++++.++.+|..|+..+||||||||||++++
T Consensus 245 ~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~ 288 (437)
T 4b4t_L 245 FSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG 288 (437)
T ss_dssp EEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC
T ss_pred EEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeeccccccc
Confidence 99999999999999999999999999999999999999999975
No 35
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-29 Score=261.65 Aligned_cols=118 Identities=45% Similarity=0.884 Sum_probs=114.5
Q ss_pred ccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 007764 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (590)
Q Consensus 472 ~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el 551 (590)
..+.|+++|+||||++++|++|++.|.+|+.+++.|.++|++|++|+|||||||||||+|||++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 552 ~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
+++|+|++|+.+|++|..|+..+||||||||+|++++.
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~ 317 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGA 317 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBC
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeeccccccccc
Confidence 99999999999999999999999999999999999763
No 36
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=9e-30 Score=254.53 Aligned_cols=249 Identities=43% Similarity=0.695 Sum_probs=206.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
.+..+|++++|++++++.+++++.. +.+|+.+.+++...+.++||+||||||||++|++++++++.+++.+++.++...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 3567899999999999999998876 788999999999999999999999999999999999999999999999999888
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc----hhHHHHHHHHHHHhhhcccc-CCeEEEEeecCCCCC
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH----GEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNS 356 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~----~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~~tn~~~~ 356 (590)
+.+.....++.+|+.+....|++|||||+|.+...+.... .....+.+.+|+..+++... ...+++|++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 8887777788899999988999999999999987653211 01111234556666666543 345899999999999
Q ss_pred CchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Q 007764 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (590)
Q Consensus 357 ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (590)
+|+++.|++||+..++++.|+.++|.++++.+++.+.+..+.++..++..+.||+++++..+|..+...+..+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~------ 237 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN------ 237 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC------
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999988888778888999999999999999999999987654322
Q ss_pred chhhhhHHHhhhhhccHHHHHhhhcCCCCCcc
Q 007764 437 EDETIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (590)
Q Consensus 437 ~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~ 468 (590)
...++.+++..++....|+..
T Consensus 238 -----------~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 238 -----------QKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp -----------CCSCCHHHHHTSCTTCCCCCC
T ss_pred -----------cCCcCHHHHHHHHHHHhhcch
Confidence 124678888888888776654
No 37
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.8e-29 Score=262.33 Aligned_cols=120 Identities=42% Similarity=0.793 Sum_probs=115.4
Q ss_pred ccccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEecc
Q 007764 470 ETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549 (590)
Q Consensus 470 ~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~ 549 (590)
....+.|+++|+||||++++|++|++.+.||+.|++.|.++|+++++|+|||||||||||+||+|+|++++.+|+.++++
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 550 el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
+++++|+|++|+.+|.+|..|+..+||||||||+|++++.
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~ 289 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK 289 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCC
T ss_pred hhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhc
Confidence 9999999999999999999999999999999999999753
No 38
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.95 E-value=4.2e-28 Score=279.74 Aligned_cols=197 Identities=25% Similarity=0.367 Sum_probs=128.2
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v 273 (590)
+-.+++++|.+++++.+.+++.. ..+.+++|+||||||||++++++|+.+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45788899999999998887744 234579999999999999999999987 7889999
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHhc-CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 274 NGPEIM--SKLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 274 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~-~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
++..+. ..+.|+.+..++.+|..+... .++||||||+|.+.+....... ....+.|..++ .+..+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l----~~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPAL----ARGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHH----HTTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHH----hCCCeEEEEe
Confidence 998886 567889999999999999875 6899999999999865433211 12223333333 3456778888
Q ss_pred cCCCC----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCC------CCCCccCHHHHHHhcC-----CCCHHHH
Q 007764 351 TNRPN----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM------KLSDDVDLERIAKDTH-----GYVGADL 415 (590)
Q Consensus 351 tn~~~----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~------~~~~~~~l~~la~~t~-----g~~~~dl 415 (590)
|+.++ .+++++.+ ||.. +.++.|+.+++.+|++.....+ .+. +..+..++..++ .|.....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcccccChHHH
Confidence 88764 47899998 9975 9999999999999998655422 222 223455555443 4455555
Q ss_pred HHHHHHHHH
Q 007764 416 AALCTEAAL 424 (590)
Q Consensus 416 ~~l~~~a~~ 424 (590)
..++.+++.
T Consensus 382 i~lldea~a 390 (854)
T 1qvr_A 382 IDLIDEAAA 390 (854)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 39
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-28 Score=256.79 Aligned_cols=119 Identities=45% Similarity=0.872 Sum_probs=114.9
Q ss_pred cccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 007764 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (590)
Q Consensus 471 ~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~e 550 (590)
...+.|+++|+||||++++|+.|++.+.+|+.+++.|.++|+.|++|+|||||||||||++||++|++++.+|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
++++|+|++++.+|++|+.|+..+||||||||+|++++.
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~ 280 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATK 280 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCS
T ss_pred hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhcc
Confidence 999999999999999999999999999999999999763
No 40
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.91 E-value=1.2e-23 Score=195.24 Aligned_cols=160 Identities=24% Similarity=0.326 Sum_probs=137.5
Q ss_pred CeEEEccccCC--CCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEc--CCCCCCCeEEeCHHHHhhccccCCCe
Q 007764 29 NRLVVDEAIND--DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALA--DDTCEEPKIRMNKVVRSNLRVRLGDV 104 (590)
Q Consensus 29 ~~~~v~~~~~~--~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~~~~ 104 (590)
-+|+|+++.++ ++++|||+|++|++||+.+||+|+|+|++ .++|++|+ +++++.+.|+||+.+|+|+|+++||.
T Consensus 7 i~L~V~~a~~~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~G~r--~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~ 84 (185)
T 1cz4_A 7 IILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVR--KTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDK 84 (185)
T ss_dssp EEEEEECCSSCCCCSSEEEECHHHHHTTCCCTTCEEEEESSS--EEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCE
T ss_pred EEEEEecCcccccCCCEEEECHHHHHHcCCCCCCEEEEEcCC--eEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCE
Confidence 37899999886 58999999999999999999999999986 46666676 46899999999999999999999999
Q ss_pred EEEEEccccCCCceEEecccc---ccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEee---cce-eEEEEEEEeCCCC
Q 007764 105 VSVHQCADVKYGKRVHILPVD---DTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRG---GMR-SVEFKVIETDPPE 177 (590)
Q Consensus 105 v~i~~~~~~~~a~~v~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~v~~~~~~~ 177 (590)
|+|++ ..+++|++|+++|.. .++. +.+. +..+++++|. .+||.+||.|.+.. .++ .+.|+|++++|.+
T Consensus 85 V~V~~-~~~~~A~~V~l~P~~~~~~~~~-~~~~-~~~~l~~~l~--~rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~ 159 (185)
T 1cz4_A 85 VKVRK-VRTEIAKKVTLAPIIRKDQRLK-FGEG-IEEYVQRALI--RRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSK 159 (185)
T ss_dssp EEEEE-ECCCBCSEEEEEEECSTTCCSC-CCSS-HHHHHHHHHT--TCEECTTCEECCSSCCCSSCCCCEEEEEEESSSS
T ss_pred EEEEE-CCCCCccEEEEecccccccccc-cccc-hHHHHHHHHC--CCcccCCCEEEEeeeccCCCeEEEEEEEEEcCCC
Confidence 99999 568999999999985 4433 3333 4679999996 48999999998863 446 7899999999999
Q ss_pred -eEEecCCceEEecCCCcc
Q 007764 178 -YCVVAPDTEIFCEGEPVR 195 (590)
Q Consensus 178 -~~~~~~~t~~~~~~~~~~ 195 (590)
+++++++|.|.+.++|..
T Consensus 160 ~~v~Vt~~T~I~i~~~p~~ 178 (185)
T 1cz4_A 160 VPVEIGEETKIEIREEPAS 178 (185)
T ss_dssp SCEECCTTCEEEECSCCST
T ss_pred ceEEEcCCeEEEECCccch
Confidence 999999999999887764
No 41
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.90 E-value=3.2e-25 Score=263.46 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=90.3
Q ss_pred cCCcccccccccchhhhcccceeecccCC----------hhhhhh------cCCC----------CCce--eEEECCCCC
Q 007764 475 VPNVNWEDIGGLENVKRELQETVQYPVEH----------PEKFEK------FGMS----------PSKG--VLFYGPPGC 526 (590)
Q Consensus 475 ~~~v~~~~iggl~~vk~~L~~~v~~~~~~----------~~~~~~------~~~~----------~~~g--vLL~GppGt 526 (590)
.+.+.|++++|++++|+.+.+.+.||+++ ++.++. .|.. +|+| +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 45699999999999999999999999955 456655 3333 3444 999999999
Q ss_pred ChhHHHHHHHHHhCCc-----EEEEec--cchh--------hhhccc----hHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 527 GKTLLAKAIANECQAN-----FISVKG--PELL--------TMWFGE----SEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 527 GKTtLAkalA~~~~~~-----~i~v~~--~el~--------~~~vGe----se~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
|||+||+++|.++..+ ||.+.+ ++++ ++|+++ +|++++.+|.+||+.+||+|||||+|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999999666 888877 5666 889999 99999999999999999999999999998
Q ss_pred cc
Q 007764 588 TQ 589 (590)
Q Consensus 588 ~~ 589 (590)
|.
T Consensus 1174 ~~ 1175 (1706)
T 3cmw_A 1174 PK 1175 (1706)
T ss_dssp CH
T ss_pred cc
Confidence 84
No 42
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=1.3e-23 Score=212.26 Aligned_cols=174 Identities=23% Similarity=0.307 Sum_probs=137.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccc
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSI 313 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid~l 313 (590)
+..++.++|||||||||||++|+++|++++.+++.++++++.+.+.|+.+..++.+|..+ +...|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567889999999999999999999999999999999999999999999999999999998 4678999999999999
Q ss_pred cCCCCCCc--hhHHHHHHHHHHHhhhccc-----------cCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHH
Q 007764 314 APKREKTH--GEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (590)
Q Consensus 314 ~~~~~~~~--~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~ 380 (590)
++.++... ....+++...|++++|+.. ...++++|+|||+++.+|++++|++||+..++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 88554221 1234567788999988443 45579999999999999999999999999887 579999
Q ss_pred HHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHH
Q 007764 381 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAA 417 (590)
Q Consensus 381 r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~ 417 (590)
|.+|++.+... .+.+...++..+.+|+++++..
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999977653 3566889999999999988753
No 43
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.88 E-value=2.6e-23 Score=211.12 Aligned_cols=121 Identities=92% Similarity=1.482 Sum_probs=116.4
Q ss_pred ccccccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEe
Q 007764 468 LRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 547 (590)
Q Consensus 468 ~~~~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~ 547 (590)
+++...+.|.++|++++|++++++.|++.+.+++.+++.|.++++.++.++|||||||||||++|+++|.+++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 56777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 548 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 548 ~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
++++.++|+|++++.++.+|+.|+...||||||||||++.+
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHH
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhh
Confidence 99999999999999999999999999999999999999864
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=208.23 Aligned_cols=116 Identities=43% Similarity=0.884 Sum_probs=109.4
Q ss_pred ccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh-CCcEEEEeccc
Q 007764 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPE 550 (590)
Q Consensus 472 ~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~-~~~~i~v~~~e 550 (590)
..+.|+++|++++|++++++.|++.+.||+.+++.|.. +..|++++|||||||||||+||+++|.++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 34678999999999999999999999999999999885 46788999999999999999999999999 89999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
++++|+|++++.++.+|+.|+...|+||||||||++.+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 119 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc
Confidence 99999999999999999999999999999999999965
No 45
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.1e-22 Score=203.15 Aligned_cols=115 Identities=57% Similarity=1.076 Sum_probs=103.1
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
+.|+++|+|+||++++|+.|++.+.+|+.+++.+.++++.+++|++|+||||||||||+|++|++++.+++.++|+++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|+|++++.++.+|+.|+...||++|+||+|.+++
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~ 117 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCP 117 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc
Confidence 99999999999999999999999999999998764
No 46
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.84 E-value=1.3e-21 Score=200.60 Aligned_cols=117 Identities=44% Similarity=0.877 Sum_probs=110.7
Q ss_pred cccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 007764 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (590)
Q Consensus 471 ~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~e 550 (590)
...+.|+++|++++|++.+++.|.+.+.+|+.+++.+.. +..|+.++|||||||||||++|+++|.+++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 345678999999999999999999999999999998887 5678899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+.++|+|++++.++.+|+.|+...|+||||||||++.+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhc
Confidence 99999999999999999999999999999999999975
No 47
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.83 E-value=1.3e-22 Score=217.80 Aligned_cols=201 Identities=19% Similarity=0.272 Sum_probs=139.6
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhh
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMS 280 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~--~~~~~v~~~~l~~ 280 (590)
+...|++++|+++.++.+.+++... ..+..++.++||+||||||||++|+++|++++ .+++.++++++.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456899999999999998877542 12456778999999999999999999999999 8999999999999
Q ss_pred hccchhHHHHHHHHHHH---HhcCCeEEEEcccccccCCCCCCchhHH----H---------------HHHHHHHHhhh-
Q 007764 281 KLAGESESNLRKAFEEA---EKNAPSIIFIDEIDSIAPKREKTHGEVE----R---------------RIVSQLLTLMD- 337 (590)
Q Consensus 281 ~~~g~~~~~~~~~f~~a---~~~~p~iL~iDEid~l~~~~~~~~~~~~----~---------------~v~~~Ll~~ld- 337 (590)
++.|+++. ++..|..+ +...|++||+||+|.+++++........ . ++..+++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999987 99999998 7788999999999999988754321110 1 11122333443
Q ss_pred -ccccCCeEEEEeecCCCCCCchhhhccCCCce--EEEecCCC--HHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCH
Q 007764 338 -GLKSRAHVIVIGATNRPNSIDPALRRFGRFDR--EIDIGVPD--EVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 412 (590)
Q Consensus 338 -~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~--~i~i~~P~--~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~ 412 (590)
+......++++++||+++.+|+++.|++||++ .+.++.|+ .++|.+|++.++. .+++.++..++| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 22334456667999999999999999999999 56667774 4667777654432 268888899999 9
Q ss_pred HHHHHHHHH
Q 007764 413 ADLAALCTE 421 (590)
Q Consensus 413 ~dl~~l~~~ 421 (590)
+|+.++|..
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999998854
No 48
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=5.5e-21 Score=198.36 Aligned_cols=115 Identities=44% Similarity=0.889 Sum_probs=103.9
Q ss_pred cccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh
Q 007764 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (590)
Q Consensus 473 ~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~ 552 (590)
.+.+.++|++++|++++++.|.+.+.+++.+++.|.+ +..++.++|||||||||||+||+++|.+++.+|+.+++++++
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 4567899999999999999999999999999999887 667889999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 553 ~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
++|+|++++.++.+|..|+...|+||||||||++.+
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG 157 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc
Confidence 999999999999999999999999999999999975
No 49
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.81 E-value=3.9e-19 Score=220.30 Aligned_cols=322 Identities=18% Similarity=0.240 Sum_probs=186.3
Q ss_pred CCCceEEEECCCCCcHHHHHH-HHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHH---------------hcCCe
Q 007764 240 KPPKGILLYGPPGSGKTLIAR-AVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE---------------KNAPS 303 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~-~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~---------------~~~p~ 303 (590)
..++++||+||||||||++|+ +++...+..++.++.+...+ ...+...++... .+.++
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 346799999999999999995 45554466777787755432 123333443321 23357
Q ss_pred EEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc--------CCeEEEEeecCCCC-----CCchhhhccCCCceE
Q 007764 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--------RAHVIVIGATNRPN-----SIDPALRRFGRFDRE 370 (590)
Q Consensus 304 iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--------~~~v~vI~~tn~~~-----~ld~al~r~gRf~~~ 370 (590)
|+||||++....+ ..++....++++|+++.- ++.. -.++.+|||||++. .+++++.| || ..
T Consensus 1339 VlFiDEinmp~~d--~yg~q~~lelLRq~le~g-g~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1339 VLFCDEINLPKLD--KYGSQNVVLFLRQLMEKQ-GFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EEEEETTTCSCCC--SSSCCHHHHHHHHHHHTS-SEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred EEEeccccccccc--ccCchhHHHHHHHHHhcC-CEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 9999999964333 333333445556665421 2111 12588999999994 89999998 88 88
Q ss_pred EEecCCCHHHHHHHHHHHhcCCC-CCCccC--HHHHHH-----------h-------cCCCCHHHHHHHHHH--------
Q 007764 371 IDIGVPDEVGRLEVLRIHTKNMK-LSDDVD--LERIAK-----------D-------THGYVGADLAALCTE-------- 421 (590)
Q Consensus 371 i~i~~P~~~~r~~Il~~~~~~~~-~~~~~~--l~~la~-----------~-------t~g~~~~dl~~l~~~-------- 421 (590)
+.++.|+.+.+..|+..+.+.+. ...++. ...++. . -.-|+-+|+..+++-
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~ 1492 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTG 1492 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchh
Confidence 99999999999999987654221 111100 000000 0 012445555444433
Q ss_pred -----------HHHHHHHhccccc-ccchhhhhHHHhhhhhccHHHHHhhhcCCCCCc-cccc--ccccCCccccccccc
Q 007764 422 -----------AALQCIREKMDVI-DLEDETIDAEILNSMAVTDEHFKTALGTSNPSA-LRET--VVEVPNVNWEDIGGL 486 (590)
Q Consensus 422 -----------a~~~~~~~~~~~~-~~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~-~~~~--~~~~~~v~~~~iggl 486 (590)
...++.|-..+.. +.++...-.+ +..+.+.+.+....... ..+. ..+..+..|+++..
T Consensus 1493 ~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~------~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~~- 1565 (2695)
T 4akg_A 1493 PRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQ------LLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNK- 1565 (2695)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHH------HHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECCH-
T ss_pred hhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHHHHhcccchhhhccCCceeeecCCCcceecCH-
Confidence 2223333332221 1111111111 11111111111111000 0000 00111122444432
Q ss_pred chhhhccccee---------------ecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 007764 487 ENVKRELQETV---------------QYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (590)
Q Consensus 487 ~~vk~~L~~~v---------------~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el 551 (590)
+++++.+.+.+ ..+++|..++.|+-.+|++++||+|++||||++|+|+.|..++..++++..+.-
T Consensus 1566 ~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~ 1645 (2695)
T 4akg_A 1566 TDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRH 1645 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTT
T ss_pred HHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCC
Confidence 33444333322 346677788888888999999999999999999999999999999999986543
Q ss_pred hhhhccch--HHHHHHHHHHHh-hCCCeEEEEcccc
Q 007764 552 LTMWFGES--EANVREIFDKAR-QSAPCVLFFDELD 584 (590)
Q Consensus 552 ~~~~vGes--e~~ir~~f~~Ar-~~~p~vlf~DEid 584 (590)
.|.+ ...++.++.+|. ++.|.+++|+|..
T Consensus 1646 ----Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1646 ----SNLSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred ----CCHHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 3444 478999999996 4567777888764
No 50
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.80 E-value=2.1e-20 Score=199.61 Aligned_cols=116 Identities=43% Similarity=0.884 Sum_probs=99.5
Q ss_pred ccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh-CCcEEEEeccc
Q 007764 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPE 550 (590)
Q Consensus 472 ~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~-~~~~i~v~~~e 550 (590)
..+.|.++|++++|++++++.|.+.+.+|+.+++.|.. +..+++++||+||||||||+||+++|.++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 44578899999999999999999999999999998875 45678999999999999999999999999 89999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
++++|+|++++.++.+|..|+...|+||||||||++.+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc
Confidence 99999999999999999999999999999999999865
No 51
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=1.1e-18 Score=177.48 Aligned_cols=212 Identities=17% Similarity=0.254 Sum_probs=159.3
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCCCC---CceEEEECCCCCcHHHHHHHHHHHhC-------CeEEEEechhh
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 278 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~---~~~vLL~GppGtGKTtla~~la~~~~-------~~~~~v~~~~l 278 (590)
+++|+++.++.|++++..+. .+..+..+|+.+ +.++||+||||||||++|+++++.++ .+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999988754 366666666554 44699999999999999999999873 37899999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC---
Q 007764 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--- 355 (590)
Q Consensus 279 ~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~--- 355 (590)
.+.+.|.....+..+|..+ .+++|||||+|.+...++. ..........|+..++.. ..++++|+++|.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN--RDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHH
Confidence 9999999888888888877 3569999999999866532 223356778888888864 34667777887543
Q ss_pred --CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhc------CCC-CHHHHHHHHHHHHHH
Q 007764 356 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT------HGY-VGADLAALCTEAALQ 425 (590)
Q Consensus 356 --~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t------~g~-~~~dl~~l~~~a~~~ 425 (590)
.+++++++ ||+..++++.|+.+++.+|++.++...... .+..+..++... ..+ ..+++..++..+...
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 24688888 999999999999999999999887654432 222344454442 222 367888888888776
Q ss_pred HHHhc
Q 007764 426 CIREK 430 (590)
Q Consensus 426 ~~~~~ 430 (590)
+..+.
T Consensus 262 ~~~r~ 266 (309)
T 3syl_A 262 QANRL 266 (309)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 52
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.78 E-value=2e-19 Score=191.75 Aligned_cols=113 Identities=39% Similarity=0.840 Sum_probs=106.4
Q ss_pred cCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 007764 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (590)
Q Consensus 475 ~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~ 554 (590)
.+.++|++++|+++.++++++.+.+ +.++..+.+++.++++|+||+||||||||+|||++|++++.+|+.++++++.++
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3578999999999999999998876 567888999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 555 ~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
|+|.+++.++.+|..|+...||||||||||++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~ 122 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR 122 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh
Confidence 9999999999999999999999999999999865
No 53
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=1.7e-19 Score=181.53 Aligned_cols=115 Identities=54% Similarity=0.974 Sum_probs=110.5
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
..|.+.|++++|++++++.|.+.+.+++.+++.+.++++.++.++||+||||||||++|+++|.+++.+|+.+.++++.+
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.|+|+++..++.+|..++...|+||||||+|.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 124 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA 124 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc
Confidence 99999999999999999999999999999999853
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.77 E-value=2.5e-19 Score=192.59 Aligned_cols=112 Identities=46% Similarity=0.904 Sum_probs=108.7
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhc
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~v 556 (590)
.+.|++++|++..++.|.+.+.+++.+++.|.+++..++.++|||||||||||++|+++|.+++.+|+.++++++.++|+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 557 GESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 557 Gese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
|+++..++.+|+.|+...|++|||||||++.+
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~ 311 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCB
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhcc
Confidence 99999999999999999999999999999876
No 55
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=4.6e-19 Score=179.42 Aligned_cols=114 Identities=42% Similarity=0.802 Sum_probs=106.4
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
+.+.+.|++++|++.+++.|.+.+.++..+++.+.+++ .++.++||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 45688999999999999999999999999998887765 56789999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|+|++++.++.+|..|+...|+||||||+|++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence 99999999999999999999999999999999864
No 56
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=176.41 Aligned_cols=111 Identities=42% Similarity=0.840 Sum_probs=96.1
Q ss_pred CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh
Q 007764 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (590)
Q Consensus 476 ~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~ 555 (590)
|++.|++++|++++++.+++.+.+ +.+++.+..++..++.++||+||||||||++|+++|.+++.+|+.+.++++.+.|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 468999999999999999998876 6778888889999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 556 FGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 556 vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
.|+++..++.+|+.|+...|+||||||+|.+.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~ 111 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVG 111 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC----
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhh
Confidence 99999999999999999999999999999984
No 57
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=3.8e-19 Score=176.17 Aligned_cols=113 Identities=40% Similarity=0.837 Sum_probs=101.2
Q ss_pred cCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 007764 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (590)
Q Consensus 475 ~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~ 554 (590)
.+...|++++|++.+++.+.+.+.+ +.+++.+.+++..++.+++|+||||||||++|+++|.+++.+|+.++++++.+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4578999999999999999998776 677888888899999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 555 ~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
|+|++++.++.+|+.|+...|+++||||+|.+.+
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~ 118 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 118 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhcc
Confidence 9999999999999999999999999999998865
No 58
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.76 E-value=5.4e-18 Score=156.29 Aligned_cols=160 Identities=14% Similarity=0.205 Sum_probs=126.1
Q ss_pred CeEEEccccCCCCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCC--CCCCCeEEeCHHHHhhccccCCCeEE
Q 007764 29 NRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADD--TCEEPKIRMNKVVRSNLRVRLGDVVS 106 (590)
Q Consensus 29 ~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~r~~~~~~~~~~v~ 106 (590)
..+.|.=.. ..+++|+|+++.|++|++.+||+|+|+|+++..+++|....+ +.+.+.|.||+.+|+|+|+++||.|+
T Consensus 13 ~~~~v~~~~-~~~~~vrL~~~~~~~L~~~~gd~VeI~g~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~ 91 (179)
T 1wlf_A 13 AVVTVAFTN-ARDCFLHLPRRLVAQLHLLQNQAIEVASDHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVF 91 (179)
T ss_dssp EEEEEEEEC-CSSSCEEECHHHHHHTTCCTTCCEEEESSSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEE
T ss_pred EEEEEEEEC-CCCcEEECCHHHHHHcCCCCCcEEEEEeCCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEE
Confidence 456664222 267899999999999999999999999987533444443334 67889999999999999999999999
Q ss_pred EEEccccCCCceEEecccccc-ccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecc-eeEEEEEEEeCC-CCeEEecC
Q 007764 107 VHQCADVKYGKRVHILPVDDT-IEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGM-RSVEFKVIETDP-PEYCVVAP 183 (590)
Q Consensus 107 i~~~~~~~~a~~v~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~~-~~~~~~~~ 183 (590)
|+++.+++.|++|+++|.+.. .+ + .+....+|+.+|..+.|+|.+||.|.+...+ ..+.|+|+++.| .+++.+++
T Consensus 92 V~~~~~~~~A~~V~laP~~~dD~e-i-~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~It~ 169 (179)
T 1wlf_A 92 LRPCSHVVSCQQVEVEPLSADDWE-I-LELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLET 169 (179)
T ss_dssp EEECSCCEECSEEEEEESSHHHHH-H-HHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEECCT
T ss_pred EEECCCCccceEEEEEcCCcCCeE-E-ehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEECC
Confidence 999778899999999998531 11 1 1222458889998889999999999986443 678999999999 88999999
Q ss_pred CceEEecC
Q 007764 184 DTEIFCEG 191 (590)
Q Consensus 184 ~t~~~~~~ 191 (590)
+|+|.+..
T Consensus 170 ~TeI~v~p 177 (179)
T 1wlf_A 170 NTKLLIQP 177 (179)
T ss_dssp TCEEEECC
T ss_pred CcEEEEec
Confidence 99998753
No 59
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.75 E-value=6.8e-19 Score=182.86 Aligned_cols=114 Identities=44% Similarity=0.838 Sum_probs=106.4
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
..+.+.|++++|++.+++.|.+.+.+++.+++.+.+.+ .++.++||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34678999999999999999999999999988887764 67789999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|+|++++.++.+|..|+...|+||||||||++.+
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc
Confidence 99999999999999999999999999999999865
No 60
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.75 E-value=7.8e-19 Score=184.46 Aligned_cols=170 Identities=24% Similarity=0.298 Sum_probs=84.8
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCC-CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccch
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK-PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 285 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~-~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~-~~~g~ 285 (590)
++|+|+++.++.|...+..+++++.++..+... ++.++||+||||||||++|+++|+.++.+++.++++.+.+ .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 369999999999999988877766666555432 5688999999999999999999999999999999999888 58884
Q ss_pred -hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEee-cCCCCCCchhhhc
Q 007764 286 -SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA-TNRPNSIDPALRR 363 (590)
Q Consensus 286 -~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~-tn~~~~ld~al~r 363 (590)
.+..++.+|+.+... +++||++.+... ......++++.+|+..||++.....+ +++ ||+++.+|++|+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 889999999998764 458998876533 34556789999999999998776554 444 9999999999999
Q ss_pred cCCCceEEEecCCCHH-HHHHHHH
Q 007764 364 FGRFDREIDIGVPDEV-GRLEVLR 386 (590)
Q Consensus 364 ~gRf~~~i~i~~P~~~-~r~~Il~ 386 (590)
++||++.|+++.|+.. .|.+|+.
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ------------------------
T ss_pred CCCcceEEEEcCCCCccchhhhhc
Confidence 9999999999999988 7888864
No 61
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=180.57 Aligned_cols=117 Identities=39% Similarity=0.705 Sum_probs=100.5
Q ss_pred cccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 007764 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (590)
Q Consensus 471 ~~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~e 550 (590)
.....+.+.|++++|++.+++.|.+.+.++..+++.+.+++ .++.++|||||||||||++|+++|.+++.+|+.+++++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 34455788999999999999999999999999888888766 45789999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+.+.|+|+++..++.+|..|+...|+||||||||+|.+
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc
Confidence 99999999999999999999999999999999999853
No 62
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.72 E-value=2.9e-17 Score=195.61 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=112.2
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCC----------hhhhhh------hC------------CCCCceEEEECCCCCc
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRH----------PQLFKS------IG------------VKPPKGILLYGPPGSG 254 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~----------~~~~~~------l~------------i~~~~~vLL~GppGtG 254 (590)
..++|++++|+++.++.+.+.+.+|+.+ ++.++. .| ++.++.+|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3579999999999999999999988844 555654 22 4566679999999999
Q ss_pred HHHHHHHHHHHh---CCeEEEEechhhh------------hhccch----hHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 007764 255 KTLIARAVANET---GAFFFCINGPEIM------------SKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 255 KTtla~~la~~~---~~~~~~v~~~~l~------------~~~~g~----~~~~~~~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
||+||++++.+. +.+.++|+..+.. +++.++ .+..++.+|..|+...|+++|+|++++|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999998765 4556666655433 566677 899999999999999999999999999999
Q ss_pred CCC---CC---chhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 316 KRE---KT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 316 ~~~---~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
.+. .. ...+..|+++|+++.+++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 842 11 1256788999999999998888888888 55554
No 63
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.72 E-value=6.1e-19 Score=175.80 Aligned_cols=114 Identities=42% Similarity=0.820 Sum_probs=106.5
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
+.+.+.|++++|++.+++.+.+.+.+ +.+++.+.+++..++.++||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 35678999999999999999998776 77889999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.|+|++++.++.+|+.|+...|+||||||+|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~ 117 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK 117 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcc
Confidence 99999999999999999999999999999999865
No 64
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.71 E-value=5.3e-18 Score=181.81 Aligned_cols=112 Identities=41% Similarity=0.878 Sum_probs=105.0
Q ss_pred CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhh
Q 007764 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (590)
Q Consensus 476 ~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~ 555 (590)
+.++|++++|++++++.+++.+.+ +.++..+.+++++.++|++|+||||||||+|||++|++++.+|+.++++++.++|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 688999999999999999998765 5677889999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 556 FGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 556 vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+|..++.++.+|+.|+...||++||||||.+.+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~ 137 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 137 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 999999999999999988899999999999864
No 65
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.70 E-value=1.7e-17 Score=181.22 Aligned_cols=168 Identities=24% Similarity=0.368 Sum_probs=118.9
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh---
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--- 280 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~--- 280 (590)
..-.+++.|+++.++.+.+.+.+.... +.+ ++.+++|+||||||||++|+++++.++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 344567999999999998776543211 112 5789999999999999999999999999999988765432
Q ss_pred ------hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc-------------
Q 007764 281 ------KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS------------- 341 (590)
Q Consensus 281 ------~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~------------- 341 (590)
.+.|.....+...|..+....| ++|+||+|.+.+.... ...+.|+..++....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeeec
Confidence 4556666666777777655555 9999999999765431 133556666654321
Q ss_pred CCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 342 RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 342 ~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
..++++|+|||+++.+++++++ || ..+.++.|+.+++.+|++.++
T Consensus 222 ~~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 222 LSKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTH
T ss_pred ccceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHH
Confidence 1468999999999999999998 99 479999999999999998765
No 66
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=2.3e-16 Score=157.48 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=132.6
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh-hhccch
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGE 285 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~-~~~~g~ 285 (590)
.+.+.|.++..+.+....... ...+...+..++.++||+||||||||++|+++++.++.+++.+++++.. +...+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred hcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 345777777766665431110 1122233446678999999999999999999999999999999887532 222223
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-cCCeEEEEeecCCCCCCch-hhhc
Q 007764 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDP-ALRR 363 (590)
Q Consensus 286 ~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v~vI~~tn~~~~ld~-al~r 363 (590)
....++.+|..+....+++|||||+|.++..+... ......+.+.|..+++... ....+++|++||.++.+++ .+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~ 187 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN 187 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc
Confidence 34567888988887788999999999997665322 1233456677777777654 3447889999999887777 4444
Q ss_pred cCCCceEEEecCCCH-HHHHHHHHHHhcCCCCCCccCHHHHHHhcCCC
Q 007764 364 FGRFDREIDIGVPDE-VGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 410 (590)
Q Consensus 364 ~gRf~~~i~i~~P~~-~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~ 410 (590)
||...+.+|.++. ++...++.. ...+ .+..+..++..+.||
T Consensus 188 --rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 188 --AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGK 229 (272)
T ss_dssp --TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTS
T ss_pred --ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCC
Confidence 9999988877765 344444432 2222 345678888888886
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.69 E-value=4.7e-16 Score=157.87 Aligned_cols=177 Identities=26% Similarity=0.410 Sum_probs=127.5
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhh-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccch
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSI-GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 285 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l-~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~-~~~g~ 285 (590)
+++.|++++++.+...+..++..+.+...+ .-..+.++||+||||||||++|+++++.++.+++.+++.++.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 359999999999988886543332222111 0134679999999999999999999999999999999988765 44443
Q ss_pred -hHHHHHHHHHHH-----HhcCCeEEEEcccccccCCCCCCchh-HHHHHHHHHHHhhhccc--------cCCeEEEEee
Q 007764 286 -SESNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGE-VERRIVSQLLTLMDGLK--------SRAHVIVIGA 350 (590)
Q Consensus 286 -~~~~~~~~f~~a-----~~~~p~iL~iDEid~l~~~~~~~~~~-~~~~v~~~Ll~~ld~~~--------~~~~v~vI~~ 350 (590)
....++.++..+ ....+++|||||+|.+.+........ ....+.+.|+..+++.. ....+++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 234455555432 11235799999999998776433222 23344677888887532 2235677777
Q ss_pred ----cCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHH
Q 007764 351 ----TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLR 386 (590)
Q Consensus 351 ----tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~ 386 (590)
++.+..+++++.+ ||+..+.++.|+.+++.+|++
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 212 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHH
Confidence 4567788999997 999889999999999999998
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.69 E-value=2e-17 Score=163.39 Aligned_cols=116 Identities=41% Similarity=0.864 Sum_probs=104.9
Q ss_pred ccccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 007764 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (590)
Q Consensus 472 ~~~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el 551 (590)
..+.|.++|++++|+++++..+++.+.+ ..++..+..++++.+.|++|+||||||||||++++|+.++..++.+.+.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456789999999999999999887654 456778889999999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 552 ~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.+.+.|+.++.++.+|+.++...|+++|+||+|.+.+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~ 122 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc
Confidence 9999999999999999999988899999999998753
No 69
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.68 E-value=7.4e-16 Score=160.62 Aligned_cols=203 Identities=23% Similarity=0.298 Sum_probs=140.2
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhhh
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSK 281 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~--~~~~v~~~~l~~~ 281 (590)
..+|++++|.+..++.+..+..... -+..++.++||+||||||||++|+++++.++. +++.+++..+...
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~~--------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMIR--------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred CcchhhccChHHHHHHHHHHHHHHH--------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 3459999999999888766554321 12345689999999999999999999999875 6788887664332
Q ss_pred cc-------------------------------------------------chhHHHHHHHHHHHHh-----c----CCe
Q 007764 282 LA-------------------------------------------------GESESNLRKAFEEAEK-----N----APS 303 (590)
Q Consensus 282 ~~-------------------------------------------------g~~~~~~~~~f~~a~~-----~----~p~ 303 (590)
+. ++....++..+..+.. . .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 21 2223345555544432 1 167
Q ss_pred EEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeec-----------CCCCCCchhhhccCCCceEEE
Q 007764 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT-----------NRPNSIDPALRRFGRFDREID 372 (590)
Q Consensus 304 iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~t-----------n~~~~ld~al~r~gRf~~~i~ 372 (590)
+|||||+|.+. ....+.|+..++.... .++++++. |.+..+++++++ ||.. +.
T Consensus 192 vl~IDEi~~l~-----------~~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~ 255 (368)
T 3uk6_A 192 VLFIDEVHMLD-----------IESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VS 255 (368)
T ss_dssp EEEEESGGGSB-----------HHHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EE
T ss_pred eEEEhhccccC-----------hHHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EE
Confidence 99999999874 2344566666655332 34554443 346789999998 8865 89
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 007764 373 IGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (590)
Q Consensus 373 i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (590)
+++|+.+++.++++..+...... .+..+..++..+.+...+.+..++..+...+..+.
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~ 314 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK 314 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999998776543322 33447788888875677888888988887765543
No 70
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.68 E-value=1.3e-17 Score=178.85 Aligned_cols=106 Identities=27% Similarity=0.358 Sum_probs=94.2
Q ss_pred cCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC--CcEEEEeccchh
Q 007764 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELL 552 (590)
Q Consensus 475 ~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~--~~~i~v~~~el~ 552 (590)
.|...|+++.|++++++.+...+.+. +.+..+++++|||||||||||++|+++|.+++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35667999999999999887765421 23666788999999999999999999999999 899999999999
Q ss_pred hhhccchHHHHHHHHHHH---hhCCCeEEEEccccccccc
Q 007764 553 TMWFGESEANVREIFDKA---RQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 553 ~~~vGese~~ir~~f~~A---r~~~p~vlf~DEid~l~~~ 589 (590)
++|+|++++ ++++|++| +...||||||||+|++.+.
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccc
Confidence 999999998 99999999 8889999999999999853
No 71
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.67 E-value=2.1e-15 Score=155.27 Aligned_cols=194 Identities=21% Similarity=0.280 Sum_probs=140.5
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
..+.+|++++|.++.++.+.+++...... -.+..++||+||||||||++|+++++.++.+++.+++..+..
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~- 93 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK- 93 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS-
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc-
Confidence 44568999999999999999888753211 134568999999999999999999999999999999876531
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc----------------CCeE
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RAHV 345 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~----------------~~~v 345 (590)
...+...+.. ...+++|||||++.+.+ .....|+..++.... ...+
T Consensus 94 -----~~~~~~~~~~--~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 94 -----SGDLAAILTN--LSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -----HHHHHHHHHT--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -----hhHHHHHHHh--ccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 2223333332 24578999999998842 233455555554321 1147
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAAL 424 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (590)
++|++||+...+++++++ ||+..+.++.|+.+++..++.......... .+..+..++..+.|.. +.+..++..+..
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~~~ 232 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP-RIALRLLKRVRD 232 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH-HHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH-HHHHHHHHHHHH
Confidence 899999999999999988 999999999999999999998877654432 2334667777666654 455555655543
Q ss_pred H
Q 007764 425 Q 425 (590)
Q Consensus 425 ~ 425 (590)
.
T Consensus 233 ~ 233 (338)
T 3pfi_A 233 F 233 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.65 E-value=7.7e-17 Score=162.63 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=67.9
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHH----hhCCCeEEEEcccccc
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSI 586 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~A----r~~~p~vlf~DEid~l 586 (590)
+.+++.++|||||||||||+||+++|.+++.+|+.++++++.++|+|++++.++++|+.| +...||||||||||++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567788999999999999999999999999999999999999999999999999999999 6788999999999998
Q ss_pred cc
Q 007764 587 AT 588 (590)
Q Consensus 587 ~~ 588 (590)
++
T Consensus 112 ~~ 113 (293)
T 3t15_A 112 AG 113 (293)
T ss_dssp --
T ss_pred cC
Confidence 86
No 73
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=6.7e-16 Score=144.66 Aligned_cols=160 Identities=23% Similarity=0.391 Sum_probs=116.9
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 272 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~ 272 (590)
.+..++++.|.+++++.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 345688899999999998877643 235789999999999999999999986 678899
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEe
Q 007764 273 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (590)
Q Consensus 273 v~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~ 349 (590)
+++..+. ..+.+.....+..+++.... ..+.+|+|||++.+.+........ .+...+..+++ ..++.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~~----~~~~~~i~ 156 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPALA----RGELHCVG 156 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHHH----TTSCCEEE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhhc----cCCeEEEE
Confidence 9988876 34566677778888876644 557899999999997654221111 11122333332 34567788
Q ss_pred ecCCCC-----CCchhhhccCCCceEEEecCCCHHHHHHHH
Q 007764 350 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVL 385 (590)
Q Consensus 350 ~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il 385 (590)
++|.+. .+++++.+ ||. .+.++.|+.+++.+|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 888765 68899998 897 6999999999998775
No 74
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.64 E-value=2e-15 Score=157.13 Aligned_cols=219 Identities=23% Similarity=0.313 Sum_probs=143.0
Q ss_pred ccchHHHHHHHHHHHHcccCChhhhh-hhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh-ccchh
Q 007764 210 VGGVRKQMAQIRELVELPLRHPQLFK-SIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK-LAGES 286 (590)
Q Consensus 210 i~G~~~~~~~l~~~~~~~~~~~~~~~-~l~-i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~-~~g~~ 286 (590)
++|++..++.+...+........... ... ..++.++||+||||||||++|+++|+.++.+++.+++.++... +.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 79999999999888853221111000 001 1256799999999999999999999999999999999988754 66664
Q ss_pred -HHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCc---hhHHHHHHHHHHHhhhccc------------------
Q 007764 287 -ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLK------------------ 340 (590)
Q Consensus 287 -~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~------------------ 340 (590)
...++.+|..+ ....+++|||||+|.+.+.+.... .....++.+.|+..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55667777665 344577999999999988765432 2223447888999988421
Q ss_pred -cCCeEEEEeecCCC----------CC-----------------------------------CchhhhccCCCceEEEec
Q 007764 341 -SRAHVIVIGATNRP----------NS-----------------------------------IDPALRRFGRFDREIDIG 374 (590)
Q Consensus 341 -~~~~v~vI~~tn~~----------~~-----------------------------------ld~al~r~gRf~~~i~i~ 374 (590)
...++++|++++.. .. +.++|.. ||+..+.+.
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 11233344443321 01 5666665 999999999
Q ss_pred CCCHHHHHHHHHH----Hh-------c--CCCCC-CccCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHhc
Q 007764 375 VPDEVGRLEVLRI----HT-------K--NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIREK 430 (590)
Q Consensus 375 ~P~~~~r~~Il~~----~~-------~--~~~~~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~~~ 430 (590)
+|+.+.+.+|+.. .. . +..+. .+..++.++.. ...+..+.+.+++..+....+.+.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999998874 11 1 11111 22234555542 233445677777777776665544
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.64 E-value=2.2e-16 Score=158.23 Aligned_cols=114 Identities=41% Similarity=0.874 Sum_probs=103.5
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
+.+.++|++++|++++++.+.+.+.+ ..++..+..+++..+.|++|+||||||||||++++|..++..++.+.+.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34789999999999999999887654 45677888899999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.+.|+.++.++.+|+.++...|+++|+||+|.+.+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~ 146 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 146 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhc
Confidence 99999999999999999988899999999998753
No 76
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.62 E-value=3.6e-16 Score=188.01 Aligned_cols=129 Identities=14% Similarity=0.175 Sum_probs=81.1
Q ss_pred hhhcCCCCCcccccccccCCccccccc-------------------ccchhhhcccceeecccCChhhhhhc---CCCCC
Q 007764 458 TALGTSNPSALRETVVEVPNVNWEDIG-------------------GLENVKRELQETVQYPVEHPEKFEKF---GMSPS 515 (590)
Q Consensus 458 ~al~~~~p~~~~~~~~~~~~v~~~~ig-------------------gl~~vk~~L~~~v~~~~~~~~~~~~~---~~~~~ 515 (590)
.++....|+.+++...++|+++|++.. ++.+++. .+...++...++.-+-+ |+.++
T Consensus 655 ~a~~~~~ps~L~e~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~--~~~~~i~TG~~eLD~llggGGl~~G 732 (2050)
T 3cmu_A 655 PNSTTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRS--MDVETISTGSLSLDIALGAGGLPMG 732 (2050)
T ss_dssp CCC----------------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTT--TSCCEECCSCHHHHHHHSSSSEETT
T ss_pred hhcccCCHHHHHhhhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhh--cccceeecCChHHHHHhccCCcCCC
Confidence 566777899999999999999997511 2223322 23445555666555554 58889
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhC---CcEEEEeccchhhhh----cc--------chHHHHHHHHHHHhh----CCCe
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMW----FG--------ESEANVREIFDKARQ----SAPC 576 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~---~~~i~v~~~el~~~~----vG--------ese~~ir~~f~~Ar~----~~p~ 576 (590)
..++|+|+||||||+||..+|..+. .+++.+++.+....+ +| .++.++.++++.+++ ..|+
T Consensus 733 ~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~ 812 (2050)
T 3cmu_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 812 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999998773 468888887766554 34 334457777777766 7899
Q ss_pred EEEEcccccccc
Q 007764 577 VLFFDELDSIAT 588 (590)
Q Consensus 577 vlf~DEid~l~~ 588 (590)
+||+|.+..+.+
T Consensus 813 LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 813 VIVVDSVAALTP 824 (2050)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEEcchhhhcc
Confidence 999999998864
No 77
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.61 E-value=8.7e-15 Score=149.65 Aligned_cols=192 Identities=23% Similarity=0.339 Sum_probs=135.8
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
..+.+|++++|.+..++.+.+++..... . -..+.+++|+||||||||++|+++++.++.+++.++++.+..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKA-------R-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHH-------H-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHc-------c-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 4456889999999999999888764211 0 124578999999999999999999999999999998876532
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc----------------cCCeE
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHV 345 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~v 345 (590)
...+...|..+ ...+.+|||||++.+.. .....|+..++... ....+
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 11222222221 14577999999998742 12244555554322 11257
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHH
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 422 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a 422 (590)
.+|++||.+..+++++.+ ||+..+.++.|+.+++.+++.......... .+..+..++..+.|+. ..+..++..+
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH-HHHHHHHHHH
Confidence 899999999999999887 998899999999999999998877654432 2334677888887765 3444555444
No 78
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=2.4e-14 Score=146.53 Aligned_cols=194 Identities=16% Similarity=0.292 Sum_probs=129.5
Q ss_pred CCCccccc-c--hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q 007764 204 EVGYDDVG-G--VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (590)
Q Consensus 204 ~~~~~~i~-G--~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~ 277 (590)
..+|+++. | .......++.++..+- ..+.+++|+||||||||++++++++.+ +.+++++++.+
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 45677764 3 4444555666655431 245789999999999999999999998 88999999988
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC--
Q 007764 278 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN-- 355 (590)
Q Consensus 278 l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~-- 355 (590)
+...+.+.........|.... ..+.+|||||++.+..+. .....++..++........+++++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l 145 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCChHHH
Confidence 876555443332223333332 247899999999986431 12234455555444444567777777766
Q ss_pred -CCchhhhccCCCc--eEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHH
Q 007764 356 -SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 423 (590)
Q Consensus 356 -~ld~al~r~gRf~--~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (590)
.+++++.+ ||. ..+.+++ +.+++.+|++..+...... ++..+..++..+ |. .+.+..++..+.
T Consensus 146 ~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~-~r~l~~~l~~~~ 212 (324)
T 1l8q_A 146 DGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KN-VREIEGKIKLIK 212 (324)
T ss_dssp TTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SS-HHHHHHHHHHHH
T ss_pred HHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CC-HHHHHHHHHHHH
Confidence 67899987 775 6789999 9999999999876533322 233477788887 54 345555555444
No 79
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.60 E-value=4.5e-15 Score=159.42 Aligned_cols=183 Identities=27% Similarity=0.373 Sum_probs=128.3
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v 273 (590)
+-.+++++|.+++++.+.+.+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 44678899999999999888764 224589999999999999999999996 6778888
Q ss_pred echhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCC
Q 007764 274 NGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (590)
Q Consensus 274 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~ 353 (590)
++. ..+.|+.+..++.+|..+....+.||||| . . ....+.|+ ....+..+.+|++||.
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~---------~~a~~~L~----~~L~~g~v~vI~at~~ 300 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-A---------IDASNILK----PSLARGELQCIGATTL 300 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------C----CCTTSSSCEEEEECCT
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-c---------hhHHHHHH----HhhcCCCEEEEecCCH
Confidence 877 67788888899999999998889999999 0 0 01112222 2334567899999998
Q ss_pred CC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-----CccCHHHHHHhcCCCCH-----HHHHHH
Q 007764 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVG-----ADLAAL 418 (590)
Q Consensus 354 ~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-----~~~~l~~la~~t~g~~~-----~dl~~l 418 (590)
++ .+++++++ ||. .+.++.|+.+++.+||+.+...+... .+..+..++..+++|.. .....+
T Consensus 301 ~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 301 DEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp TTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 87 68999999 996 59999999999999999776653221 22345666666655543 345566
Q ss_pred HHHHHH
Q 007764 419 CTEAAL 424 (590)
Q Consensus 419 ~~~a~~ 424 (590)
+.+++.
T Consensus 378 l~~a~~ 383 (468)
T 3pxg_A 378 IDEAGS 383 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 80
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.59 E-value=4.2e-14 Score=150.55 Aligned_cols=199 Identities=18% Similarity=0.288 Sum_probs=132.7
Q ss_pred CCCCccccc-chHH--HHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 007764 203 DEVGYDDVG-GVRK--QMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCIN 274 (590)
Q Consensus 203 ~~~~~~~i~-G~~~--~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~ 274 (590)
+..+|+++. |... ....+..+...+- . +.+++|+||||||||||++++++.+ +..+++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~~-----------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHPG-----------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHSTT-----------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCCC-----------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 345788865 5333 3344444444321 1 5689999999999999999999988 77889999
Q ss_pred chhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 275 GPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 275 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
+.++...+.+.........|.......+.+|||||++.+.... .....++..++.+......+++++.+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 9887655443332222223333333368899999999986531 1223455555554455566677666666
Q ss_pred CC---CchhhhccCCCc--eEEEecCCCHHHHHHHHHHHhc--CCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 007764 355 NS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQC 426 (590)
Q Consensus 355 ~~---ld~al~r~gRf~--~~i~i~~P~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 426 (590)
.. +++.+.+ ||. ..+.++.|+.++|.+|+...+. ++.+.++ .+..++..+.| ..+++..++..+...+
T Consensus 239 ~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 239 QKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 54 7788887 664 7889999999999999987765 3444443 37788888876 4556666666665544
No 81
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.57 E-value=5e-15 Score=138.16 Aligned_cols=152 Identities=25% Similarity=0.412 Sum_probs=110.9
Q ss_pred CCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 007764 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (590)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v 273 (590)
+-.++++.|.+++++.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 45678899999999888777643 235689999999999999999999987 6778888
Q ss_pred echhhhh--hccchhHHHHHHHHHHHHhc-CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 274 NGPEIMS--KLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 274 ~~~~l~~--~~~g~~~~~~~~~f~~a~~~-~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
++..+.. .+.+.....+..++..+... .+.+|||||++.+.+.+..... ...+.+.|...++ ...+.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~----~~~~~ii~~ 158 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLA----RGELRCIGA 158 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHH----TTCSCEEEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHh----cCCeeEEEe
Confidence 8877653 34566667778888777655 6789999999999755431110 0112233333333 346778888
Q ss_pred cCCCC-----CCchhhhccCCCceEEEecCCC
Q 007764 351 TNRPN-----SIDPALRRFGRFDREIDIGVPD 377 (590)
Q Consensus 351 tn~~~-----~ld~al~r~gRf~~~i~i~~P~ 377 (590)
+|.+. .+++++++ ||.. ++++.|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 88764 68999998 8974 8898885
No 82
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.57 E-value=1.8e-14 Score=179.69 Aligned_cols=324 Identities=16% Similarity=0.255 Sum_probs=173.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHH-HhCCeEEEEechhhhhhccchhHHHHHHHHHHH----------------HhcCCe
Q 007764 241 PPKGILLYGPPGSGKTLIARAVAN-ETGAFFFCINGPEIMSKLAGESESNLRKAFEEA----------------EKNAPS 303 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~-~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----------------~~~~p~ 303 (590)
.++++||+||||||||++++.... ..+..++.++++.-.+ ...+...++.. ..++..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 467999999999999987765444 3455667777754332 12233333321 012346
Q ss_pred EEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcc-------ccCCeEEEEeecCCC-----CCCchhhhccCCCceEE
Q 007764 304 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-------KSRAHVIVIGATNRP-----NSIDPALRRFGRFDREI 371 (590)
Q Consensus 304 iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-------~~~~~v~vI~~tn~~-----~~ld~al~r~gRf~~~i 371 (590)
|+|+||++. +..+..+....-.+++|++..-.-+ ..-.++.+|||+|+| ..+++++.| || ..+
T Consensus 1377 VlFiDDiNm--p~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi 1451 (3245)
T 3vkg_A 1377 VVFCDEINL--PSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PIL 1451 (3245)
T ss_dssp EEEETTTTC--CCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEE
T ss_pred EEEecccCC--CCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEE
Confidence 999999995 3333333333344555554431111 112367899999988 368999988 78 559
Q ss_pred EecCCCHHHHHHHHHHHhcCCC-CCCccC--HHHHHHh------------------cCCCCHHHHHHHHHHHH-------
Q 007764 372 DIGVPDEVGRLEVLRIHTKNMK-LSDDVD--LERIAKD------------------THGYVGADLAALCTEAA------- 423 (590)
Q Consensus 372 ~i~~P~~~~r~~Il~~~~~~~~-~~~~~~--l~~la~~------------------t~g~~~~dl~~l~~~a~------- 423 (590)
.++.|+.+....|+......+. ..++.. ...++.. -.-|+-+|+..+++-..
T Consensus 1452 ~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~ 1531 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMD 1531 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHhcCccc
Confidence 9999999999999764432111 111100 0111110 11245666666555332
Q ss_pred ------------HHHHHhcccccc-cchhhhhHHHhhhhhccHHHHHhhhcCCCCCccccccc--ccCCcccccccccch
Q 007764 424 ------------LQCIREKMDVID-LEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVV--EVPNVNWEDIGGLEN 488 (590)
Q Consensus 424 ------------~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~~~~~~al~~~~p~~~~~~~~--~~~~v~~~~iggl~~ 488 (590)
.++.|-..+... .++...-..... .+...+|. ........+..+ ..-.-.+..+ ..++
T Consensus 1532 ~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~--~~~~~~F~----~~~~~~~~~pllf~~f~~~~Y~~v-~~~~ 1604 (3245)
T 3vkg_A 1532 GCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKID--EVALKHFP----SVNLDALKRPILYSNWLTKDYQPV-NRSD 1604 (3245)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHH--HHHHHHCT----TSCGGGGCSSCCCCSSCC----CC-CHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhcC----cchhhhcccCcchhhhccccCccC-CHHH
Confidence 222222222111 111111110000 01111211 110000000000 0000011222 1222
Q ss_pred hhhcccce---------------eecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 489 VKRELQET---------------VQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 489 vk~~L~~~---------------v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
+++.+.+. ...++.|..++.|+-.+|++++||+|..||||++|+|..|..+++.++++..+.-++
T Consensus 1605 l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~ 1684 (3245)
T 3vkg_A 1605 LREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK 1684 (3245)
T ss_dssp HHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC
T ss_pred HHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC
Confidence 22222211 134566777778888889999999999999999999999999999999987554322
Q ss_pred hhccchHHHHHHHHHHHh-hCCCeEEEEcccc
Q 007764 554 MWFGESEANVREIFDKAR-QSAPCVLFFDELD 584 (590)
Q Consensus 554 ~~vGese~~ir~~f~~Ar-~~~p~vlf~DEid 584 (590)
+.+-...++.++.+|. .+.|.+++|+|-.
T Consensus 1685 --~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1685 --SSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp --HHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred --HHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 2233578999999996 4667888898764
No 83
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.55 E-value=6.2e-14 Score=168.80 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=64.1
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhCCc-----EEEEecc--chhhhhcc------------chHHHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGP--ELLTMWFG------------ESEANVREIFDKAR 571 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~-----~i~v~~~--el~~~~vG------------ese~~ir~~f~~Ar 571 (590)
|+.++++++||||||||||+||.++|.++..+ ||.+.++ .++.+..| .+|+.++.+++.++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 58889999999999999999999999887433 7776643 22233345 56899999999999
Q ss_pred hCCCeEEEEcccccccc
Q 007764 572 QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 572 ~~~p~vlf~DEid~l~~ 588 (590)
+.+|++|||||++++.|
T Consensus 1503 ~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred cCCCCEEEEcChhHhcc
Confidence 99999999999998876
No 84
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.55 E-value=1.1e-13 Score=141.55 Aligned_cols=180 Identities=19% Similarity=0.280 Sum_probs=129.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
..+.+|+++.|.++.++.+++++... ..+..+|++||||||||++++++++.++..++.+++++..
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-- 85 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-- 85 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--
Confidence 45568999999999999999888731 3345788899999999999999999999999999986632
Q ss_pred ccchhHHHHHHHHHHHHhc-----CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCC
Q 007764 282 LAGESESNLRKAFEEAEKN-----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 356 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~-----~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ 356 (590)
...++..+...... .+.++||||+|.+.. ....+.|+..++... ..+.+|++||.+..
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~~--~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 86 -----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAYS--SNCSIIITANNIDG 148 (324)
T ss_dssp -----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHHG--GGCEEEEEESSGGG
T ss_pred -----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhCC--CCcEEEEEeCCccc
Confidence 33444444443332 568999999998841 123355666666543 35677789999999
Q ss_pred CchhhhccCCCceEEEecCCCHHHHHHHHHHHh---------cCCCCCCccCHHHHHHhcCCCCHHHH
Q 007764 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT---------KNMKLSDDVDLERIAKDTHGYVGADL 415 (590)
Q Consensus 357 ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~---------~~~~~~~~~~l~~la~~t~g~~~~dl 415 (590)
+++++++ || ..+.++.|+.+++.+|+.... .+..+.+...+..++..+.|.....+
T Consensus 149 l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 149 IIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred cCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 9999998 88 579999999998766654332 12333331446778888777766533
No 85
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.53 E-value=2.1e-13 Score=142.54 Aligned_cols=204 Identities=20% Similarity=0.230 Sum_probs=135.0
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEech
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGP 276 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---------~~~~~~v~~~ 276 (590)
..+++.|.+++++.+.+++...+. -..+.+++|+||||||||++++++++.+ +..++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 347799999999999887754321 1456789999999999999999999988 7788999986
Q ss_pred hhhhh----------------ccch-hHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhc
Q 007764 277 EIMSK----------------LAGE-SESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (590)
Q Consensus 277 ~l~~~----------------~~g~-~~~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (590)
...+. ..+. .......++..... ..+.+|||||++.+.... .....+..++.++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQE 161 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGC
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhh
Confidence 53211 0111 22223444444433 347899999999885432 012344555555543
Q ss_pred cccCCeEEEEeecCCC---CCCchhhhccCCCce-EEEecCCCHHHHHHHHHHHhcC----CCCCCccCHHHHHHhcC--
Q 007764 339 LKSRAHVIVIGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKN----MKLSDDVDLERIAKDTH-- 408 (590)
Q Consensus 339 ~~~~~~v~vI~~tn~~---~~ld~al~r~gRf~~-~i~i~~P~~~~r~~Il~~~~~~----~~~~~~~~l~~la~~t~-- 408 (590)
.....++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.++..+++...+.. ..+ ++..+..++..+.
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALAARE 238 (387)
T ss_dssp C-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHHHSS
T ss_pred cCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHh
Confidence 3214577888899887 677888887 8875 8999999999999999877542 223 2334677777776
Q ss_pred -CCCHHHHHHHHHHHHHHHHH
Q 007764 409 -GYVGADLAALCTEAALQCIR 428 (590)
Q Consensus 409 -g~~~~dl~~l~~~a~~~~~~ 428 (590)
|... .+..++..+...+..
T Consensus 239 ~G~~r-~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 239 HGDAR-RALDLLRVAGEIAER 258 (387)
T ss_dssp SCCHH-HHHHHHHHHHHHHHH
T ss_pred ccCHH-HHHHHHHHHHHHHHH
Confidence 6543 445666666554443
No 86
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.7e-14 Score=142.39 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=115.1
Q ss_pred ccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEechhhh
Q 007764 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCINGPEIM 279 (590)
Q Consensus 210 i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----------~~~~~~v~~~~l~ 279 (590)
+.|-+++++.|..++.-.+. -..+.+++|+||||||||++++.+++++ ...++++||..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 77788888888777654332 2567899999999999999999999998 3467899986543
Q ss_pred h----------hc------cchhHHHHHHHHHHH--HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc
Q 007764 280 S----------KL------AGESESNLRKAFEEA--EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341 (590)
Q Consensus 280 ~----------~~------~g~~~~~~~~~f~~a--~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 341 (590)
+ .. .+.....++..|... ....+.|+++||+|.+. . +.++..|+.+.. ..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~--~~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWIS--SK 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHH--CS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhccc--cc
Confidence 2 12 133456677778764 34567899999999997 1 234555555543 24
Q ss_pred CCeEEEEeecCCCCCCc----hhhhccCCCc-eEEEecCCCHHHHHHHHHHHhcC
Q 007764 342 RAHVIVIGATNRPNSID----PALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN 391 (590)
Q Consensus 342 ~~~v~vI~~tn~~~~ld----~al~r~gRf~-~~i~i~~P~~~~r~~Il~~~~~~ 391 (590)
..++++|+++|..+..+ +++++ ||. ..+.|++++.++..+|++..+..
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 45789999999876543 34444 775 68999999999999999876644
No 87
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.53 E-value=3.6e-13 Score=129.03 Aligned_cols=176 Identities=20% Similarity=0.219 Sum_probs=122.7
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGP 276 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~ 276 (590)
..+..++++.|.++.++.+.+++... ...+++|+||||||||++++++++.+ ...++.+++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 35567889999999999998888642 23359999999999999999999875 3456777765
Q ss_pred hhhhhccchhHHHHHHHHHHHH------hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 277 EIMSKLAGESESNLRKAFEEAE------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~a~------~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
...+ ...+...+.... ...+.+|+|||++.+.+. ....|+..++.. ..++.+|++
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~--~~~~~~i~~ 138 (226)
T 2chg_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY--SKSCRFILS 138 (226)
T ss_dssp CTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT--TTTEEEEEE
T ss_pred cccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhc--CCCCeEEEE
Confidence 4322 112222222222 246789999999987431 234556666553 235677778
Q ss_pred cCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 351 TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 351 tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
+|.+..+++++.+ |+. .+.++.|+.++..+++.......... ++..+..++..+.|...
T Consensus 139 ~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 198 (226)
T 2chg_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFR 198 (226)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHH
T ss_pred eCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 8888889999987 886 89999999999999998766432221 23346677777766543
No 88
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=4.1e-14 Score=153.96 Aligned_cols=200 Identities=22% Similarity=0.283 Sum_probs=130.4
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcc-cCChhhhhhhCCC---CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELP-LRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~-~~~~~~~~~l~i~---~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~ 277 (590)
..+.+|++++|.+++++.|++++... ...+..+...|.. ++.++||+||||||||++|+++|++++..++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45668999999999999999998742 1122233333332 5679999999999999999999999999999999987
Q ss_pred hhhhccchhH-------HHHHHHHHHH-----HhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeE
Q 007764 278 IMSKLAGESE-------SNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 345 (590)
Q Consensus 278 l~~~~~g~~~-------~~~~~~f~~a-----~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (590)
.......... ..+...|..+ ....+.+|||||+|.+..... ..+..|..+++. ....+
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~--~~~~i 182 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRK--TSTPL 182 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHH--CSSCE
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHh--cCCCE
Confidence 6543211100 0012223322 225678999999999876432 123455555554 23345
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhc--CCCCCCccCHHHHHHhcCCCCHHHHH
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHGYVGADLA 416 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~t~g~~~~dl~ 416 (590)
++++++.....+.+ ++ |+...+.++.|+.+++.+++...+. +..+.+ ..+..++..+.|-...-+.
T Consensus 183 Ili~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 183 ILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp EEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHTTTCHHHHHH
T ss_pred EEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCcHHHHHH
Confidence 55554433333433 33 5567899999999999999876543 344444 3478888888775544333
No 89
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.52 E-value=3.9e-13 Score=130.76 Aligned_cols=187 Identities=14% Similarity=0.120 Sum_probs=121.8
Q ss_pred CCcccccc---hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhh
Q 007764 205 VGYDDVGG---VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEI 278 (590)
Q Consensus 205 ~~~~~i~G---~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~---~~~~~v~~~~l 278 (590)
.+|+++.| .+..++.++.++.. ..+.+++|+||||||||++++++++.+. ..++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 56777665 34666666666543 2467999999999999999999998864 67888888776
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeE-EEEeecCCCC--
Q 007764 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPN-- 355 (590)
Q Consensus 279 ~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-~vI~~tn~~~-- 355 (590)
........ .. ...+.+|||||++.+.... .....|+..++.......+ ++++++..+.
T Consensus 92 ~~~~~~~~--------~~--~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 92 ASISTALL--------EG--LEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGSCGGGG--------TT--GGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHHHHH--------Hh--ccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 65432111 11 1346799999999875431 1123455555444333333 5555554444
Q ss_pred -CCchhhhccCCCc--eEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 007764 356 -SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQC 426 (590)
Q Consensus 356 -~ld~al~r~gRf~--~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 426 (590)
.+++.+.+ ||. ..+.++.|+.+++.+++.......... .+..+..++..+.| ..+.+..++..+...+
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 34577776 665 889999999999999998876533322 23346777777765 4455666666655544
No 90
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.51 E-value=2.1e-13 Score=145.09 Aligned_cols=184 Identities=21% Similarity=0.267 Sum_probs=126.5
Q ss_pred CCCCCcccccchHHHH---HHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 202 LDEVGYDDVGGVRKQM---AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~---~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
..+.+++++.|.+..+ ..|+..+... ...++||+||||||||++|+++++.++..++.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 3456889999999998 6777777542 12589999999999999999999999999999986432
Q ss_pred hhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeec--C
Q 007764 279 MSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT--N 352 (590)
Q Consensus 279 ~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~t--n 352 (590)
....++.++..+. ...+.+|||||+|.+.... ...|+..++. ..+++|++| |
T Consensus 87 -------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le~----~~v~lI~att~n 144 (447)
T 3pvs_A 87 -------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIED----GTITFIGATTEN 144 (447)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSC
T ss_pred -------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHhc----CceEEEecCCCC
Confidence 1233455555443 3467899999999885432 2335555543 346666665 4
Q ss_pred CCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCC-------C-CCccCHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007764 353 RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-------L-SDDVDLERIAKDTHGYVGADLAALCTEAAL 424 (590)
Q Consensus 353 ~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~-------~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (590)
....+++++.+ |+ ..+.+..|+.++...++........ . .++..++.++..+.|... .+..++..+..
T Consensus 145 ~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R-~lln~Le~a~~ 220 (447)
T 3pvs_A 145 PSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDAR-RALNTLEMMAD 220 (447)
T ss_dssp GGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHH-HHHHHHHHHHH
T ss_pred cccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHH-HHHHHHHHHHH
Confidence 44578999988 77 4788999999999999987765421 1 123346778888777554 44445554443
No 91
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.49 E-value=2.5e-13 Score=137.95 Aligned_cols=200 Identities=18% Similarity=0.270 Sum_probs=127.7
Q ss_pred ccccchHHHHHHHHHHHHccc---CChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 007764 208 DDVGGVRKQMAQIRELVELPL---RHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~---~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~ 281 (590)
+++.|.+..++.+...+.... .+| -.+..++||+||||||||++|+++++.+ +.+++.+++..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDP-------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCT-------TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence 458899999999988776431 111 1234589999999999999999999997 455888988765432
Q ss_pred c-----cchh----HHH-HHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc---------C
Q 007764 282 L-----AGES----ESN-LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS---------R 342 (590)
Q Consensus 282 ~-----~g~~----~~~-~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~---------~ 342 (590)
. .|.. ... ...+.........+++||||+|.+.+ .+.+.|+..++.... -
T Consensus 90 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp THHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred ccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 1 1100 000 01222233334458999999998732 345667777754321 1
Q ss_pred CeEEEEeecCC--------------------------CCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCC----
Q 007764 343 AHVIVIGATNR--------------------------PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM---- 392 (590)
Q Consensus 343 ~~v~vI~~tn~--------------------------~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~---- 392 (590)
.++++|++||. ...+++++.+ ||+..+.+++|+.+++..|++.++..+
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 25678899998 3356777775 999999999999999999988655432
Q ss_pred -----CC-CCccCHHHHHHhcC--CCCHHHHHHHHHHHHHHHH
Q 007764 393 -----KL-SDDVDLERIAKDTH--GYVGADLAALCTEAALQCI 427 (590)
Q Consensus 393 -----~~-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~ 427 (590)
.. -.+..+..++...- ....+++..++..+...++
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 11 12223445554333 3445666666666655443
No 92
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.49 E-value=3.5e-13 Score=140.87 Aligned_cols=176 Identities=22% Similarity=0.271 Sum_probs=109.9
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhh-----------------hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFK-----------------SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF 271 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~-----------------~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~ 271 (590)
.++|+++.++.|...+........... .-...++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999887743222211100 011235678999999999999999999999999999
Q ss_pred EEechhhh-hhccchh-HHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchhH---HHHHHHHHHHhhhccc--
Q 007764 272 CINGPEIM-SKLAGES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEV---ERRIVSQLLTLMDGLK-- 340 (590)
Q Consensus 272 ~v~~~~l~-~~~~g~~-~~~~~~~f~~a----~~~~p~iL~iDEid~l~~~~~~~~~~~---~~~v~~~Ll~~ld~~~-- 340 (590)
.+++..+. ..+.|.. +..+...+... ....++++||||++.+...+....... ...+.+.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998765 3344432 34455555432 234578999999999987643221111 1236677888887531
Q ss_pred -----------------cCCeEEEEeecCCC-----------------------------------------CCCchhhh
Q 007764 341 -----------------SRAHVIVIGATNRP-----------------------------------------NSIDPALR 362 (590)
Q Consensus 341 -----------------~~~~v~vI~~tn~~-----------------------------------------~~ld~al~ 362 (590)
...++++|+++|.. ..+.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 11345677776621 12345555
Q ss_pred ccCCCceEEEecCCCHHHHHHHHH
Q 007764 363 RFGRFDREIDIGVPDEVGRLEVLR 386 (590)
Q Consensus 363 r~gRf~~~i~i~~P~~~~r~~Il~ 386 (590)
. |++..+.+++++.++...|+.
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHh
Confidence 5 888889999999988888885
No 93
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=6.6e-13 Score=138.89 Aligned_cols=191 Identities=20% Similarity=0.214 Sum_probs=128.4
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----------CCeEEEEech
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----------GAFFFCINGP 276 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-----------~~~~~~v~~~ 276 (590)
+++.|.+++++.+.+++...... ..+.+++|+||||||||++++++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 77999999999998887643221 345689999999999999999999987 8889999987
Q ss_pred hhh-hh----------c-------cch-hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHH-HHHHHHhh
Q 007764 277 EIM-SK----------L-------AGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI-VSQLLTLM 336 (590)
Q Consensus 277 ~l~-~~----------~-------~g~-~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v-~~~Ll~~l 336 (590)
+.. .. . .+. ....+..++..... .+.+|||||+|.+..... ... +..|+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~-------~~~~l~~l~~~~ 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRG-------GDIVLYQLLRSD 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTT-------SHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCC-------CceeHHHHhcCC
Confidence 643 10 0 011 12223344443333 334999999998864321 112 33333322
Q ss_pred hccccCCeEEEEeecCCC---CCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC-C--CCCCccCHHHHHHhcC--
Q 007764 337 DGLKSRAHVIVIGATNRP---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLERIAKDTH-- 408 (590)
Q Consensus 337 d~~~~~~~v~vI~~tn~~---~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~-~--~~~~~~~l~~la~~t~-- 408 (590)
.++.+|++||.+ +.+++.+.+ ||...+.+++|+.++..+++...+.. + ...++..++.++..+.
T Consensus 163 ------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 163 ------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKE 234 (384)
T ss_dssp ------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTT
T ss_pred ------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhc
Confidence 578888888877 678888887 88779999999999999999877642 2 1122334677777776
Q ss_pred -CCCHHHHHHHHHHHHH
Q 007764 409 -GYVGADLAALCTEAAL 424 (590)
Q Consensus 409 -g~~~~dl~~l~~~a~~ 424 (590)
|... .+..++..+..
T Consensus 235 ~G~~r-~a~~~l~~a~~ 250 (384)
T 2qby_B 235 HGDAR-KAVNLLFRAAQ 250 (384)
T ss_dssp CCCHH-HHHHHHHHHHH
T ss_pred cCCHH-HHHHHHHHHHH
Confidence 4332 33445555543
No 94
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.47 E-value=3.3e-14 Score=144.32 Aligned_cols=104 Identities=27% Similarity=0.429 Sum_probs=87.7
Q ss_pred cccccccchhhhcccceeecccCChhhhhhcCCCC---CceeEEECCCCCChhHHHHHHHHHh-------CCcEEEEecc
Q 007764 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 549 (590)
Q Consensus 480 ~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~---~~gvLL~GppGtGKTtLAkalA~~~-------~~~~i~v~~~ 549 (590)
|.+++|++.+++.+.+.+.+.. .+....++|+.+ +.++||+||||||||++|+++|..+ ..+|+.++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 4478999999999998887654 345555666554 3469999999999999999999988 3489999999
Q ss_pred chhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 550 el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
++.+.|+|++++.++.+|+.+. ++||||||+|.+.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~ 143 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLY 143 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSC
T ss_pred HhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhc
Confidence 9999999999999999999984 5699999999884
No 95
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.46 E-value=9.9e-13 Score=127.60 Aligned_cols=186 Identities=19% Similarity=0.255 Sum_probs=126.5
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------ 269 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------ 269 (590)
..+..++++.|.+++++.+.+.+... ..+..++|+||+|+|||++++++++.++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34556888999999999998887542 224579999999999999999999887432
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHH
Q 007764 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (590)
Q Consensus 270 ------------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (590)
++.++... ......++.++.... ...+.+|+|||++.+.+ ...+.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~ 147 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 147 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHH
Confidence 12222111 112233444544432 23478999999998631 2345566
Q ss_pred HhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCH
Q 007764 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (590)
Q Consensus 334 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~ 412 (590)
..++.. ...+.+|.+|+.+..+++.+.+ |+ ..+.++.++.++..+++...+...... ++..+..++..+.|. .
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~ 221 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS-L 221 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTC-H
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC-H
Confidence 666543 3367777888888888888877 65 789999999999999998776533222 234477888888874 4
Q ss_pred HHHHHHHHHH
Q 007764 413 ADLAALCTEA 422 (590)
Q Consensus 413 ~dl~~l~~~a 422 (590)
..+..++..+
T Consensus 222 ~~~~~~~~~~ 231 (250)
T 1njg_A 222 RDALSLTDQA 231 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555666554
No 96
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=2.1e-12 Score=134.84 Aligned_cols=202 Identities=20% Similarity=0.262 Sum_probs=132.4
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCeEEEEechhhh
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET------GAFFFCINGPEIM 279 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~------~~~~~~v~~~~l~ 279 (590)
..+++.|.+++++.+.+++...+.. ..+..++|+||+|||||++++++++.+ +..++++++....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 4477999999999998877543211 446789999999999999999999988 7889999976432
Q ss_pred h------hc----------cch-hHHHHHHHHHHHHhc-CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc
Q 007764 280 S------KL----------AGE-SESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341 (590)
Q Consensus 280 ~------~~----------~g~-~~~~~~~~f~~a~~~-~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 341 (590)
. .. .+. .......+++..... .|.+|+|||++.+..... ...+..++..++.. .
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~-~ 160 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV-N 160 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC-C
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc-C
Confidence 1 10 111 222344444444433 389999999999864421 12345555556544 3
Q ss_pred CCeEEEEeecCCC---CCCchhhhccCCCc-eEEEecCCCHHHHHHHHHHHhcC-C--CCCCccCHHHHHHhcC---CCC
Q 007764 342 RAHVIVIGATNRP---NSIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLERIAKDTH---GYV 411 (590)
Q Consensus 342 ~~~v~vI~~tn~~---~~ld~al~r~gRf~-~~i~i~~P~~~~r~~Il~~~~~~-~--~~~~~~~l~~la~~t~---g~~ 411 (590)
..++.+|++++.+ ..+++.+.+ ||. +.+.+++++.++..+++...+.. . ....+..+..++..+. |..
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDA 238 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCH
T ss_pred CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCH
Confidence 4477888888876 356777776 665 58999999999999999876532 1 1112233566666665 655
Q ss_pred HHHHHHHHHHHHHHHH
Q 007764 412 GADLAALCTEAALQCI 427 (590)
Q Consensus 412 ~~dl~~l~~~a~~~~~ 427 (590)
.. +..++..+...+.
T Consensus 239 r~-~~~ll~~a~~~a~ 253 (386)
T 2qby_A 239 RR-ALDLLRVSGEIAE 253 (386)
T ss_dssp HH-HHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHH
Confidence 43 3446666655444
No 97
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.45 E-value=7.3e-13 Score=135.90 Aligned_cols=153 Identities=23% Similarity=0.260 Sum_probs=106.1
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech------hhh
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM 279 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~------~l~ 279 (590)
.++++.|.++.++.+...+.. +.++||+||||||||++|+++++.++.+++.+++. ++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 346788999888887665532 35899999999999999999999999999888873 222
Q ss_pred hhccchhHHHHHHHHHHHHhcC---CeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcc---------ccCCeEEE
Q 007764 280 SKLAGESESNLRKAFEEAEKNA---PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL---------KSRAHVIV 347 (590)
Q Consensus 280 ~~~~g~~~~~~~~~f~~a~~~~---p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~---------~~~~~v~v 347 (590)
+........ ..|. .... .+++|+||++.+.+ ...+.|+..++.. .....+++
T Consensus 90 g~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 90 GTMIYNQHK---GNFE--VKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEEETTT---TEEE--EEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred CceeecCCC---CceE--eccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 211100000 0000 0011 26999999998632 2345555655532 12335778
Q ss_pred EeecCCCC-----CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC
Q 007764 348 IGATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (590)
Q Consensus 348 I~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~ 391 (590)
++++|+.+ .+++++.+ ||...+.++.|+.+++.+|++.+...
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 88888654 38899998 99889999999999999999987654
No 98
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.43 E-value=5.1e-12 Score=129.74 Aligned_cols=195 Identities=21% Similarity=0.309 Sum_probs=130.9
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~ 281 (590)
+..-+++++.|.+..++.+...+..... - -.++.+++|+||||||||||++++|+.++..+...+++.+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-------R-GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-------H-TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-------c-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 3445778888988888888766643110 0 134578999999999999999999999998887777654421
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc----------------cCCeE
Q 007764 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHV 345 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~v 345 (590)
...+..++.. .....|+|+||++.+.+. +.+.|+..+.... ....+
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC---------------CCC
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1122222222 234579999999987531 1122333332111 01236
Q ss_pred EEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHHHHHHHHHHHHH
Q 007764 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAAL 424 (590)
Q Consensus 346 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (590)
.++++++++..+++.+++ ||.....+++|+.++..++++...+..... ++..+..++..++|.. +.+..++..+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Confidence 677899999999999998 998889999999999999998776544332 2334778888888865 455566666554
Q ss_pred HH
Q 007764 425 QC 426 (590)
Q Consensus 425 ~~ 426 (590)
.+
T Consensus 229 ~a 230 (334)
T 1in4_A 229 ML 230 (334)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 99
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.43 E-value=2.1e-12 Score=133.31 Aligned_cols=159 Identities=23% Similarity=0.369 Sum_probs=98.2
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE----Eechhh
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC----INGPEI 278 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~----v~~~~l 278 (590)
++.+|+++.|.++.++.+......+ ...++||+||||||||++|+++++.++..... +++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 5678999999998776654333221 23469999999999999999999988642110 011100
Q ss_pred hh---------------------hccchhHHHH------HHHHHHH---------HhcCCeEEEEcccccccCCCCCCch
Q 007764 279 MS---------------------KLAGESESNL------RKAFEEA---------EKNAPSIIFIDEIDSIAPKREKTHG 322 (590)
Q Consensus 279 ~~---------------------~~~g~~~~~~------~~~f~~a---------~~~~p~iL~iDEid~l~~~~~~~~~ 322 (590)
.. ...+.++..+ ...+... ....+++|||||++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-------
Confidence 00 0001111110 1111111 112367999999998742
Q ss_pred hHHHHHHHHHHHhhhcc----c-------cCCeEEEEeecCCCC-CCchhhhccCCCceEEEecCC-CHHHHHHHHHH
Q 007764 323 EVERRIVSQLLTLMDGL----K-------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLEVLRI 387 (590)
Q Consensus 323 ~~~~~v~~~Ll~~ld~~----~-------~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P-~~~~r~~Il~~ 387 (590)
...+.|+..++.- . ....+++|+++|+.+ .+++++.+ ||+..+.++.| +.+.+.+|+..
T Consensus 159 ----~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 159 ----HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ----HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 2334555555431 1 112688999999754 78999998 99988999999 67777788765
No 100
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.43 E-value=2.7e-14 Score=148.63 Aligned_cols=107 Identities=24% Similarity=0.434 Sum_probs=81.6
Q ss_pred ccccchhhhcccceeecccCChhhhhh-cCC-CCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh-hccch
Q 007764 483 IGGLENVKRELQETVQYPVEHPEKFEK-FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGES 559 (590)
Q Consensus 483 iggl~~vk~~L~~~v~~~~~~~~~~~~-~~~-~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~-~vGes 559 (590)
+.|++.+++.+...+............ ... .++.++||+||||||||++|+++|..++.+|+.++++++... |+|++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 578888888887766322111110000 011 256789999999999999999999999999999999998854 99987
Q ss_pred -HHHHHHHHHHH----hhCCCeEEEEccccccccc
Q 007764 560 -EANVREIFDKA----RQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 560 -e~~ir~~f~~A----r~~~p~vlf~DEid~l~~~ 589 (590)
+..++.+|+.+ ..+.++||||||||++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK 131 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence 67888999887 4556789999999998764
No 101
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.42 E-value=1.5e-12 Score=148.47 Aligned_cols=159 Identities=22% Similarity=0.290 Sum_probs=115.3
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCC----CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh---
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV----KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK--- 281 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i----~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~--- 281 (590)
++.|.++.++.+...+.... .|+ .+..++||+||||||||++|++++..++.+++.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 47788888888877665321 122 233479999999999999999999999999999999887653
Q ss_pred ---------ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc---------CC
Q 007764 282 ---------LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS---------RA 343 (590)
Q Consensus 282 ---------~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~---------~~ 343 (590)
|.|..+ -+.+....+...++++||||++.+. ..+.+.|+..|+.-.- -.
T Consensus 531 ~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHH--TTHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCccc--cchHHHHHHhCCCcEEEEeCccccC-----------HHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 222211 1223344445567899999999763 3466777777774221 13
Q ss_pred eEEEEeecCCCC-------------------------CCchhhhccCCCceEEEecCCCHHHHHHHHHHHhc
Q 007764 344 HVIVIGATNRPN-------------------------SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (590)
Q Consensus 344 ~v~vI~~tn~~~-------------------------~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~ 390 (590)
++++|+|||... .+++++.. ||+..+.+++|+.+++..|+..++.
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 578999999753 45677776 9999999999999999999987654
No 102
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=6.3e-12 Score=131.50 Aligned_cols=199 Identities=20% Similarity=0.197 Sum_probs=131.5
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCc--eEEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhh
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK--GILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIMS 280 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~--~vLL~GppGtGKTtla~~la~~~----~~~~~~v~~~~l~~ 280 (590)
.+++.|.+++++.+.+++...... ..+. .++|+||||||||++++++++.+ +..++.+++.....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 377999999999998887643211 2334 89999999999999999999998 56788888754321
Q ss_pred ------hc----------cch-hHHHHHHHHHHHH-hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc-
Q 007764 281 ------KL----------AGE-SESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS- 341 (590)
Q Consensus 281 ------~~----------~g~-~~~~~~~~f~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~- 341 (590)
.. .+. .......+..... ...|.+|+|||++.+. ......|+.++.....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCCC
Confidence 10 011 1122222222222 2458899999999871 2345666666655432
Q ss_pred -CCeEEEEeecCCC---CCCchhhhccCCCce-EEEecCCCHHHHHHHHHHHhcC---CCCCCccCHHHHHHhc------
Q 007764 342 -RAHVIVIGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKN---MKLSDDVDLERIAKDT------ 407 (590)
Q Consensus 342 -~~~v~vI~~tn~~---~~ld~al~r~gRf~~-~i~i~~P~~~~r~~Il~~~~~~---~~~~~~~~l~~la~~t------ 407 (590)
..++.+|+++|.+ +.+++.+.+ ||.. .+.+++++.++..+++...... ....++..+..++..+
T Consensus 156 ~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 156 GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1467888888877 567777766 6654 7999999999999999876542 1122334577788888
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHH
Q 007764 408 ---HGYVGADLAALCTEAALQCIR 428 (590)
Q Consensus 408 ---~g~~~~dl~~l~~~a~~~~~~ 428 (590)
.|. ...+..++..+...+..
T Consensus 234 ~~~~G~-~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 234 DTNRGD-ARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp CTTSCC-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCc-HHHHHHHHHHHHHHHHH
Confidence 454 34455666666655443
No 103
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.41 E-value=1.1e-12 Score=133.27 Aligned_cols=181 Identities=20% Similarity=0.206 Sum_probs=122.7
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGP 276 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~ 276 (590)
..+.+|+++.|.+..++.+++++.. ....+++|+||||||||++++++++.+ +..++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 4566789999999999988776643 122359999999999999999999986 2346778876
Q ss_pred hhhhhccchhHHHHHHHHHHH-H-hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 277 EIMSKLAGESESNLRKAFEEA-E-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~a-~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
+..+ .......+....... . ...+.+++|||+|.+.. ...+.|+..++.. ...+.+|.+||.+
T Consensus 78 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~~ 142 (319)
T 2chq_A 78 DERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNYV 142 (319)
T ss_dssp STTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSS--SSSEEEEEEESCG
T ss_pred cccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCCh
Confidence 5432 111112222211000 0 14478999999998742 1234455555543 2467778888988
Q ss_pred CCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHH
Q 007764 355 NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 355 ~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~ 413 (590)
..+.+++.+ |+. .+.+++|+.++..+++...+...... ++..+..++..+.|....
T Consensus 143 ~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~ 199 (319)
T 2chq_A 143 SRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRK 199 (319)
T ss_dssp GGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHH
T ss_pred hhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 889999987 774 89999999999999998776644332 233466777777665543
No 104
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=2e-12 Score=133.65 Aligned_cols=179 Identities=21% Similarity=0.259 Sum_probs=122.5
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CeEEEEec
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------AFFFCING 275 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~------~~~~~v~~ 275 (590)
..+.+|+++.|.++.++.+...+... ...+++|+||||||||++++++++.++ ..+..+++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 45668899999999999888776531 123599999999999999999999864 34777776
Q ss_pred hhhhhhccchhHHHHHHHHHHHH----------------hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcc
Q 007764 276 PEIMSKLAGESESNLRKAFEEAE----------------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL 339 (590)
Q Consensus 276 ~~l~~~~~g~~~~~~~~~f~~a~----------------~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~ 339 (590)
.+..+ ...++..+.... ...+.++|+||++.+.+. ..+.|+..++..
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le~~ 160 (353)
T 1sxj_D 98 SDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMETY 160 (353)
T ss_dssp SSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHT
T ss_pred ccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHHhc
Confidence 55321 111222221111 123569999999987432 235566666654
Q ss_pred ccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCC-CCccCHHHHHHhcCCCCHHHH
Q 007764 340 KSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADL 415 (590)
Q Consensus 340 ~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl 415 (590)
.. ...+|.++|.+..+.+++++ |+. .+.++.|+.++...++...+..... -++..+..++..+.|.....+
T Consensus 161 ~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 161 SG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGI 232 (353)
T ss_dssp TT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHH
T ss_pred CC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 43 34455577888889999988 774 7899999999999999876643332 233457888888887655433
No 105
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.41 E-value=2.7e-12 Score=146.23 Aligned_cols=162 Identities=20% Similarity=0.287 Sum_probs=115.2
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccc
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAG 284 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g 284 (590)
+++.|.+..++.+.+.+........ . .-.+..++||+||||||||++|++++..+ +.+++.++++++...+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---D-PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---C-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 4689999999999888764321100 0 00122379999999999999999999997 678999999998876654
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc---------cCCeEEEEeecCCCC
Q 007764 285 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRPN 355 (590)
Q Consensus 285 ~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~vI~~tn~~~ 355 (590)
. .+.+....+...+++|||||++.+. ..+.+.|+..++.-. ...++++|+|||.+.
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAH-----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSC-----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 4 1222334445566899999998763 345677777777532 123578888999654
Q ss_pred C------------CchhhhccCCCceEEEecCCCHHHHHHHHHHHhc
Q 007764 356 S------------IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (590)
Q Consensus 356 ~------------ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~ 390 (590)
. +.|++.. ||+..+.+++|+.+++.+|+.....
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 4 6777776 9999999999999999999876543
No 106
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=3.5e-12 Score=129.86 Aligned_cols=180 Identities=18% Similarity=0.191 Sum_probs=125.8
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGP 276 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~ 276 (590)
..+..++++.|.+..++.+++++... ...+++|+||+|+|||++++++++.+ +..++.++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDG-------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSC-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 34567889999999999998887541 12249999999999999999999986 3346777765
Q ss_pred hhhhhccchhHHHHHHHHHHHH-------hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEe
Q 007764 277 EIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~a~-------~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~ 349 (590)
+.. ....++..++... ...+.+++|||+|.+... ..+.|+..++... ..+.+|.
T Consensus 82 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~--~~~~~il 142 (323)
T 1sxj_B 82 DDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMELYS--NSTRFAF 142 (323)
T ss_dssp SCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHHTT--TTEEEEE
T ss_pred ccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhccC--CCceEEE
Confidence 421 1234455555544 234789999999987421 2344555555432 3566677
Q ss_pred ecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC--CCCCCccCHHHHHHhcCCCCHHHHHH
Q 007764 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGYVGADLAA 417 (590)
Q Consensus 350 ~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~--~~~~~~~~l~~la~~t~g~~~~dl~~ 417 (590)
+|+.+..+.+.+++ |+ ..+.++.|+.++..+++...+.. ..+ ++..+..++..+.|.....+..
T Consensus 143 ~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~a~~~ 208 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINN 208 (323)
T ss_dssp EESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHH
T ss_pred EeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 88888889999887 76 48999999999999999876543 333 2334677888887766544433
No 107
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=7.6e-12 Score=127.62 Aligned_cols=181 Identities=21% Similarity=0.237 Sum_probs=122.4
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEech
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCINGP 276 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~-----~~~~~v~~~ 276 (590)
..+.+|++++|.++.++.+..++... ...+++|+||||+|||++++++++.+. ..++.++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 45667899999999999998887541 223699999999999999999999863 236777766
Q ss_pred hhhhhccchhHHHHHHHHHH--HHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 277 EIMSKLAGESESNLRKAFEE--AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~--a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
+..+. ......+...... .....+.++++||+|.+.+ ...+.|+..++... ..+.+|.++|.+
T Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~~i~~~~~~ 150 (327)
T 1iqp_A 86 DERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFS--SNVRFILSCNYS 150 (327)
T ss_dssp CHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTT--TTEEEEEEESCG
T ss_pred ccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhcC--CCCeEEEEeCCc
Confidence 54321 1111112211100 0014578999999998742 22355666666532 356677788888
Q ss_pred CCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHH
Q 007764 355 NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 355 ~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~ 413 (590)
..+.+.+.+ |+. .+.+++|+.++..+++...+...... ++..+..++..+.|....
T Consensus 151 ~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~ 207 (327)
T 1iqp_A 151 SKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRR 207 (327)
T ss_dssp GGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHH
T ss_pred cccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHH
Confidence 889999887 774 78999999999999988776544321 233467777777765443
No 108
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.37 E-value=3.3e-12 Score=158.92 Aligned_cols=128 Identities=20% Similarity=0.307 Sum_probs=92.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~ 321 (590)
..+.++.||+|||||++++++|+.+|.+++.++|.+-+. ...+..+|..+... .+++++||++.+-+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~------ 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE------ 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh------
Confidence 468999999999999999999999999999999987553 23456677666544 36999999997643
Q ss_pred hhHHHHHHHHHHHhhhcc--------------ccCCeEEEEeecCCC----CCCchhhhccCCCceEEEecCCCHHHHHH
Q 007764 322 GEVERRIVSQLLTLMDGL--------------KSRAHVIVIGATNRP----NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (590)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~--------------~~~~~v~vI~~tn~~----~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 383 (590)
++...+..++....+.+ .-.....+++|.|+. ..+++++++ || +.+.+..|+.+...+
T Consensus 712 -evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 712 -KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 23333333333322221 112345677788843 468899987 77 789999999998888
Q ss_pred HHH
Q 007764 384 VLR 386 (590)
Q Consensus 384 Il~ 386 (590)
|+.
T Consensus 788 i~l 790 (2695)
T 4akg_A 788 MIL 790 (2695)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 109
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.34 E-value=7.8e-12 Score=134.15 Aligned_cols=152 Identities=19% Similarity=0.221 Sum_probs=92.6
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEec-----hhhhhh
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCING-----PEIMSK 281 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~--~~~~v~~-----~~l~~~ 281 (590)
.+.|.++.++.+...+.. +.++||+||||||||++|++++..++. ++..+++ +++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 377888877766544432 469999999999999999999998843 4555444 233332
Q ss_pred ccchhHHHHHHHHHHHHhc---CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc--------cCCeEEEEee
Q 007764 282 LAGESESNLRKAFEEAEKN---APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVIGA 350 (590)
Q Consensus 282 ~~g~~~~~~~~~f~~a~~~---~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~v~vI~~ 350 (590)
+.+..... ...|..+..+ .++|+||||++.+. ..+.+.|+..|+... .....++|++
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 22211111 1122222222 36799999997642 234566777775311 1112245667
Q ss_pred cCCCCC---CchhhhccCCCceEEEecCCCH-HHHHHHHHHHh
Q 007764 351 TNRPNS---IDPALRRFGRFDREIDIGVPDE-VGRLEVLRIHT 389 (590)
Q Consensus 351 tn~~~~---ld~al~r~gRf~~~i~i~~P~~-~~r~~Il~~~~ 389 (590)
||++.. ..+++.+ ||...+.++.|+. +++..|+..+.
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 775322 3357776 9999999999987 67888887543
No 110
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=1.3e-11 Score=127.61 Aligned_cols=181 Identities=17% Similarity=0.254 Sum_probs=118.2
Q ss_pred CCCCCcccccchHHHHHHHHHHH-HcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC------------
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELV-ELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~------------ 268 (590)
..+.+|+++.|.++.++.++.++ .. ....+++|+||+|+||||+++++++.+..
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 34567899999999988887665 22 11223999999999999999999996411
Q ss_pred -----------------eEEEEechhhhhhccchhHHHHHHHHHHHH--------------hcCCeEEEEcccccccCCC
Q 007764 269 -----------------FFFCINGPEIMSKLAGESESNLRKAFEEAE--------------KNAPSIIFIDEIDSIAPKR 317 (590)
Q Consensus 269 -----------------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~--------------~~~p~iL~iDEid~l~~~~ 317 (590)
.++.+++.+.. ......++..+.... ...+.++++||++.+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~--- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC---
T ss_pred ecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC---
Confidence 12222222110 001112344444332 2357799999999852
Q ss_pred CCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcC--CCCC
Q 007764 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLS 395 (590)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~--~~~~ 395 (590)
....+.|+..++.... +..+|.+||.++.+.+.+++ |+ ..+.+++|+.++..+++...+.. ..+.
T Consensus 148 --------~~~~~~L~~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (354)
T 1sxj_E 148 --------KDAQAALRRTMEKYSK--NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLE 214 (354)
T ss_dssp --------HHHHHHHHHHHHHSTT--TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEEC
T ss_pred --------HHHHHHHHHHHHhhcC--CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 1233556666665433 46677788888889999987 77 88999999999999999876543 3333
Q ss_pred CccCHHHHHHhcCCCCHHHH
Q 007764 396 DDVDLERIAKDTHGYVGADL 415 (590)
Q Consensus 396 ~~~~l~~la~~t~g~~~~dl 415 (590)
.+..+..++..+.|..+..+
T Consensus 215 ~~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 215 TKDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp CSHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHH
Confidence 14457888888877655433
No 111
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.32 E-value=3.3e-13 Score=141.79 Aligned_cols=103 Identities=23% Similarity=0.361 Sum_probs=83.3
Q ss_pred ccccccchhhhcccceeecccCChhhhhhcCCC-CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh-hhccc
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE 558 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~-~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~-~~vGe 558 (590)
++|+|++++|+.|...+.++..+...+..+... +++++||+||||||||++|+++|.+++.+|+.++++++.+ .|+|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 578999999999988887665555444443332 5678999999999999999999999999999999999998 59996
Q ss_pred -hHHHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 559 -SEANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 559 -se~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
+++.++++|+.|+.. +++||++++.
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~ 120 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNR 120 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhh
Confidence 799999999999875 4588887653
No 112
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.30 E-value=3.9e-11 Score=124.83 Aligned_cols=185 Identities=19% Similarity=0.268 Sum_probs=125.3
Q ss_pred CCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------------
Q 007764 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------------- 269 (590)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~------------- 269 (590)
.+..|+++.|.++.++.+.+.+... ..+..++|+||+|||||++++++++.++..
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 4557889999999999998887531 224578999999999999999999987532
Q ss_pred -----------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHH
Q 007764 270 -----------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 334 (590)
Q Consensus 270 -----------~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~ 334 (590)
++.+++.. ......++.+++.+. ...+.+++|||+|.+.. ...+.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHH
Confidence 22222211 011123455555543 23467999999998732 23455666
Q ss_pred hhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHhcCCCCHH
Q 007764 335 LMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 335 ~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~~~l~~la~~t~g~~~~ 413 (590)
.++.. ...+++|.+|+.+..+.+.+.+ |+ ..+.++.|+.++..+++...+...... ++..+..++..+.|...
T Consensus 142 ~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r- 215 (373)
T 1jr3_A 142 TLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR- 215 (373)
T ss_dssp HHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHH-
T ss_pred HHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHH-
Confidence 66653 3367777788888888888886 76 789999999999999998766433222 22346778888877544
Q ss_pred HHHHHHHHH
Q 007764 414 DLAALCTEA 422 (590)
Q Consensus 414 dl~~l~~~a 422 (590)
.+..++..+
T Consensus 216 ~~~~~l~~~ 224 (373)
T 1jr3_A 216 DALSLTDQA 224 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444555444
No 113
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.30 E-value=3.2e-12 Score=127.26 Aligned_cols=74 Identities=35% Similarity=0.561 Sum_probs=64.6
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchH----HHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese----~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
+..++.++||+||||||||++|+++|..++.+|+.+.+++. ++|.++ ..++.+|+.++...+++|||||||.+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 45677889999999999999999999999999999988863 455543 67899999999888999999999998
Q ss_pred c
Q 007764 587 A 587 (590)
Q Consensus 587 ~ 587 (590)
.
T Consensus 137 ~ 137 (272)
T 1d2n_A 137 L 137 (272)
T ss_dssp T
T ss_pred h
Confidence 3
No 114
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.28 E-value=1.2e-12 Score=142.86 Aligned_cols=106 Identities=28% Similarity=0.417 Sum_probs=75.8
Q ss_pred cCCcccccccccchhhhcccceeecccCChhhhhhcCCC-CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh
Q 007764 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (590)
Q Consensus 475 ~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~-~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~ 553 (590)
....-++++.|++++++.+.+.+.+. .+... ++..++|+||||||||||||++|..++.+|+.+....+..
T Consensus 75 ~~~~l~~di~G~~~vk~~i~~~~~l~--------~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~ 146 (543)
T 3m6a_A 75 AGRLLDEEHHGLEKVKERILEYLAVQ--------KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRD 146 (543)
T ss_dssp GGGTHHHHCSSCHHHHHHHHHHHHHH--------HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH--------HhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccch
Confidence 34556788999999998886654321 11211 5667999999999999999999999999999998776543
Q ss_pred ---------hhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 554 ---------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 554 ---------~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
+|+|...+.+++.|..|....| |+||||||++.++
T Consensus 147 ~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~ 190 (543)
T 3m6a_A 147 ESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSD 190 (543)
T ss_dssp -----------------CHHHHHHTTCSSSE-EEEEEESSSCC--
T ss_pred hhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhh
Confidence 7899999999999999987776 9999999999764
No 115
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.27 E-value=1.6e-11 Score=121.77 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=88.4
Q ss_pred CCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhh
Q 007764 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSK 281 (590)
Q Consensus 205 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~---~~~~~v~~~~l~~~ 281 (590)
.+|+++.|.+..++.+.+.+.... ..+.+++|+||||||||++|++++.... .+++.+++..+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 367889999999988877775432 2346899999999999999999999875 57999998876322
Q ss_pred c-----cchhHH----H---HHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc---------
Q 007764 282 L-----AGESES----N---LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------- 340 (590)
Q Consensus 282 ~-----~g~~~~----~---~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------- 340 (590)
. .|.... . ....+.. ...++|||||++.+.. .....|+..++...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCccc
Confidence 1 111000 0 0011222 2356999999998743 23345666665321
Q ss_pred cCCeEEEEeecCCC-------CCCchhhhccCCCceEEEecCCCHHH
Q 007764 341 SRAHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVG 380 (590)
Q Consensus 341 ~~~~v~vI~~tn~~-------~~ld~al~r~gRf~~~i~i~~P~~~~ 380 (590)
...++.+|++||.+ ..+++.+.. ||.. +.+..|...+
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~ 181 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRE 181 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGG
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhh
Confidence 12357788888874 235667766 6742 3444444433
No 116
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.26 E-value=1.4e-12 Score=132.13 Aligned_cols=109 Identities=26% Similarity=0.437 Sum_probs=78.7
Q ss_pred ccccccchhhhcccceeecccCChhhhhhc-CCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhh-hhccc
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE 558 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~-~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~-~~vGe 558 (590)
+++.|++++++.+...+..+..+......+ .-.++.+++|+||||||||++|+++|..++.+|+.++++++.+ .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 457788888888876654322111110000 1124678999999999999999999999999999999999876 67775
Q ss_pred h-HHHHHHHHHHH-----hhCCCeEEEEccccccccc
Q 007764 559 S-EANVREIFDKA-----RQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 559 s-e~~ir~~f~~A-----r~~~p~vlf~DEid~l~~~ 589 (590)
. +..++++|..+ +...++||||||+|.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 131 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCC
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcc
Confidence 4 56678877643 1123679999999999764
No 117
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.26 E-value=3.3e-12 Score=133.38 Aligned_cols=109 Identities=22% Similarity=0.331 Sum_probs=73.5
Q ss_pred ccccccchhhhcccceeecccCChhhhh-----------------hcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcE
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFE-----------------KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 543 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~-----------------~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~ 543 (590)
+++.|++++++.|...+........... .-...+..++||+||||||||++|+++|..++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3578999999998877643222211100 01123556799999999999999999999999999
Q ss_pred EEEeccchh-hhhccch-HHHHHHHHHHHh----hCCCeEEEEccccccccc
Q 007764 544 ISVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 544 i~v~~~el~-~~~vGes-e~~ir~~f~~Ar----~~~p~vlf~DEid~l~~~ 589 (590)
+.++++.+. +.|+|+. +..+..+|..+. .+.++||||||+|++.+.
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence 999998875 5678876 566777776543 336789999999998764
No 118
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.25 E-value=3e-11 Score=139.27 Aligned_cols=200 Identities=18% Similarity=0.261 Sum_probs=128.4
Q ss_pred ccccchHHHHHHHHHHHHccc---CChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 007764 208 DDVGGVRKQMAQIRELVELPL---RHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~---~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~ 281 (590)
+++.|.++.++.+...+.... ..| -.+..++||+||||||||++|++++..+ +.+++.++++++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~-------~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDP-------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCS-------SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCC-------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence 568999999999988775421 111 0223589999999999999999999998 678999999876543
Q ss_pred c-----cchhH-----HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhcccc---------C
Q 007764 282 L-----AGESE-----SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS---------R 342 (590)
Q Consensus 282 ~-----~g~~~-----~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~---------~ 342 (590)
. .|... ...+.+........+++|||||++.+. ..+.+.|+..++.-.- -
T Consensus 631 ~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH-----------PDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGGGGC--------------CHHHHHHHCSSEEEEESSGGGSC-----------HHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred hHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC-----------HHHHHHHHHHhccCceECCCCCEecc
Confidence 1 11100 011233333444556899999998763 3466778888874321 1
Q ss_pred CeEEEEeecCCC--------------------------CCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCC----
Q 007764 343 AHVIVIGATNRP--------------------------NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM---- 392 (590)
Q Consensus 343 ~~v~vI~~tn~~--------------------------~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~---- 392 (590)
.++++|+|||.. ..+.|++.. ||+..+.+.+|+.++...|+...+..+
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 267788899972 234566665 999999999999999988887654421
Q ss_pred -----CC-CCccCHHHHHHhcC--CCCHHHHHHHHHHHHHHHH
Q 007764 393 -----KL-SDDVDLERIAKDTH--GYVGADLAALCTEAALQCI 427 (590)
Q Consensus 393 -----~~-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~ 427 (590)
.+ -.+..+..++.... .+..+.+..++..+....+
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 11 11223445555443 3455666666666655443
No 119
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.25 E-value=6.3e-12 Score=112.42 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=78.6
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHH
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESES 288 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~ 288 (590)
+++|.+++++++++.+.... ..+.+|+|+||||||||++|++++...+ +++.+++.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 47788889888888876432 3356899999999999999999999887 89999998776543
Q ss_pred HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 289 ~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
....|+.+. .++|||||++.+.+. ....|+..++... ..++.+|++||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRN-----------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHH-----------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHH-----------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 344455443 469999999988432 2344555555432 3456777777754
No 120
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.25 E-value=1.1e-11 Score=111.03 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=77.9
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccch
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE 285 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~ 285 (590)
++.|.+..++++++.+.... ..+.+|||+||||||||++|++++... +.+++ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 47788888888887775422 345689999999999999999999886 66788 998876544
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 286 ~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
......|..+. .++|||||+|.+.+ .....|+..+... ..++.+|++||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~-----------~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTR-----------EQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCH-----------HHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCH-----------HHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 12333455543 45999999998743 2334566666432 3356778888874
No 121
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=3.1e-10 Score=116.67 Aligned_cols=175 Identities=19% Similarity=0.268 Sum_probs=117.0
Q ss_pred CCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----eEEEEech
Q 007764 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCINGP 276 (590)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~-----~~~~v~~~ 276 (590)
..+-+++++.|.+..++.|...+... . ..+++|+|||||||||+++++++.+.. .+..++.+
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~g------------~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDEG------------K-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTT------------C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhcC------------C-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 45667889999999999988777531 1 124999999999999999999998632 35666654
Q ss_pred hhhhhccchhHHHHHHHHHHHHh------cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 277 EIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 277 ~l~~~~~g~~~~~~~~~f~~a~~------~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
+.. + ...++..+..... ..+.++++||+|.+.. ...+.|+..++.... ...+|.+
T Consensus 86 ~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~--~~~~il~ 146 (340)
T 1sxj_C 86 DDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERYTK--NTRFCVL 146 (340)
T ss_dssp SCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTT--TEEEEEE
T ss_pred ccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcCCC--CeEEEEE
Confidence 421 1 1233333333321 2367999999998742 123456666665433 4556667
Q ss_pred cCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhc--CCCCCCccCHHHHHHhcCCCCH
Q 007764 351 TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHGYVG 412 (590)
Q Consensus 351 tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~t~g~~~ 412 (590)
+|.+..+.+++++ |+. .+.+..++.++..+++...+. ++.+. +..+..++..+.|-..
T Consensus 147 ~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~-~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 147 ANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLS-PNAEKALIELSNGDMR 206 (340)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTTCHH
T ss_pred ecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHH
Confidence 8888889999987 774 788999998888888876663 33333 2335566666665433
No 122
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.21 E-value=6.6e-12 Score=130.59 Aligned_cols=75 Identities=23% Similarity=0.412 Sum_probs=56.6
Q ss_pred CCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC--cEEEEeccchhh
Q 007764 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT 553 (590)
Q Consensus 476 ~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--~~i~v~~~el~~ 553 (590)
|...|+++.|.+..++.+...... + .-+..++.++||+||||||||++|+++|..++. +|+.+.++++.+
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~-------~-~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM-------I-REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------H-HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH-------H-HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 445589999999888776544321 1 124456688999999999999999999999975 899999888665
Q ss_pred hhccc
Q 007764 554 MWFGE 558 (590)
Q Consensus 554 ~~vGe 558 (590)
.+++.
T Consensus 111 ~~~~~ 115 (368)
T 3uk6_A 111 LEMSK 115 (368)
T ss_dssp SSSCH
T ss_pred cccch
Confidence 55444
No 123
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.21 E-value=2e-11 Score=113.84 Aligned_cols=97 Identities=21% Similarity=0.389 Sum_probs=75.5
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh----------CCcEEEEe
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v~ 547 (590)
..|+++.|.++..+.+.+.+. ...+.+++|+||||||||++|+++|..+ +.+++.+.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 356666676665555544322 1345679999999999999999999986 67899999
Q ss_pred ccchh--hhhccchHHHHHHHHHHHh-hCCCeEEEEccccccc
Q 007764 548 GPELL--TMWFGESEANVREIFDKAR-QSAPCVLFFDELDSIA 587 (590)
Q Consensus 548 ~~el~--~~~vGese~~ir~~f~~Ar-~~~p~vlf~DEid~l~ 587 (590)
..+++ ..+.|+.++.++++|+.+. ...++||||||+|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMV 128 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGT
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHh
Confidence 88877 5677888889999998774 4568899999999985
No 124
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=3.5e-12 Score=138.75 Aligned_cols=112 Identities=20% Similarity=0.337 Sum_probs=81.3
Q ss_pred Ccccccccccchhhhcccceeec-ccCChhhhhhcCCC---CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchh
Q 007764 477 NVNWEDIGGLENVKRELQETVQY-PVEHPEKFEKFGMS---PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~-~~~~~~~~~~~~~~---~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~ 552 (590)
..+|+++.|.+...+.|.+.+.. ...++..+.+.+.. +..++||+||||||||++|+++|.+++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 34788999999998888877642 22222333343433 557899999999999999999999999999999999876
Q ss_pred hhhccchHH-------HHHHHHHHH-----hhCCCeEEEEcccccccc
Q 007764 553 TMWFGESEA-------NVREIFDKA-----RQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 553 ~~~vGese~-------~ir~~f~~A-----r~~~p~vlf~DEid~l~~ 588 (590)
+.++.++.- .++.+|..+ ....++||||||+|.+.+
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch
Confidence 655443221 134555555 345689999999999865
No 125
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.18 E-value=2.6e-11 Score=112.69 Aligned_cols=96 Identities=19% Similarity=0.415 Sum_probs=74.1
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh----------CCcEEEEec
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v~~ 548 (590)
.|+++.|.+...+.+.+.+. .....+++|+||||||||++|+++|..+ +.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 45666666655444444321 1345679999999999999999999987 778888888
Q ss_pred cchh--hhhccchHHHHHHHHHHHhhC-CCeEEEEccccccc
Q 007764 549 PELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIA 587 (590)
Q Consensus 549 ~el~--~~~vGese~~ir~~f~~Ar~~-~p~vlf~DEid~l~ 587 (590)
..+. .++.|..+..+++++..+... .|++|||||+|.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVV 128 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGS
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhc
Confidence 7776 346677788899999988766 78899999999986
No 126
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.15 E-value=8.3e-11 Score=118.89 Aligned_cols=146 Identities=24% Similarity=0.359 Sum_probs=90.5
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc--
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL-- 282 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~-- 282 (590)
+++.|.+..++.+.+.+.... ..+.++||+||||||||++|++++... +.+++.++|..+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 357888888888887776532 345689999999999999999999975 5678999987653211
Q ss_pred ---cch----hHH---HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc---------cCC
Q 007764 283 ---AGE----SES---NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRA 343 (590)
Q Consensus 283 ---~g~----~~~---~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~ 343 (590)
.|. ... .....|..+. .++|||||++.+.. .....|+..++... ...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccC
Confidence 111 000 1122344442 45999999998843 23345666665432 123
Q ss_pred eEEEEeecCCC-------CCCchhhhccCCCceEEEecCCCHHHH
Q 007764 344 HVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGR 381 (590)
Q Consensus 344 ~v~vI~~tn~~-------~~ld~al~r~gRf~~~i~i~~P~~~~r 381 (590)
++.+|++||.+ ..+++.+.. ||. .+.+..|...+|
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR 178 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQR 178 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGG
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHh
Confidence 57888999975 123344443 453 444445554443
No 127
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.11 E-value=9.7e-10 Score=112.65 Aligned_cols=167 Identities=15% Similarity=0.206 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------------------
Q 007764 213 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------------------- 269 (590)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~----------------------- 269 (590)
+++..+.+...+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 455666666655431 234579999999999999999999987532
Q ss_pred -EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCe
Q 007764 270 -FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (590)
Q Consensus 270 -~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (590)
++.+++.+- + .....+.++.+++.+.. ....|++|||+|.+.. ...+.|+..++.. ..+
T Consensus 75 d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep--~~~ 138 (334)
T 1a5t_A 75 DYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEP--PAE 138 (334)
T ss_dssp TEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSC--CTT
T ss_pred CEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCC--CCC
Confidence 233332210 0 01123456666666542 3467999999998742 2345677777653 335
Q ss_pred EEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHH
Q 007764 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGAD 414 (590)
Q Consensus 345 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~d 414 (590)
+++|.+|+.++.+.+.+++ |+ ..+.++.|+.++..+++.... .. ++..+..++..+.|..+..
T Consensus 139 ~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 139 TWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp EEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCHHHH
T ss_pred eEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHH
Confidence 6777788888899999997 77 579999999999999988664 22 3334567777777765543
No 128
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.07 E-value=1e-10 Score=128.86 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=96.6
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEE----echhhhhhc-
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSKL- 282 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v----~~~~l~~~~- 282 (590)
..+.|++..++.+.-.+.. ..+.......+....++||+||||||||++|+++++.++...+.. ++..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 3588888877666322211 110000011223445899999999999999999999987665432 122222111
Q ss_pred ----cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-----------cCCeEEE
Q 007764 283 ----AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIV 347 (590)
Q Consensus 283 ----~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~v 347 (590)
.|..... ...+..| ..+++||||+|.+.+. ....|+..|+... ...++.+
T Consensus 373 ~~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred ecccccccccc-CCeeEec---CCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 1111000 0112222 3469999999987432 3355666665321 1235789
Q ss_pred EeecCCCC-------------CCchhhhccCCCce-EEEecCCCHHHHHHHHHHHhc
Q 007764 348 IGATNRPN-------------SIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTK 390 (590)
Q Consensus 348 I~~tn~~~-------------~ld~al~r~gRf~~-~i~i~~P~~~~r~~Il~~~~~ 390 (590)
|+|||++. .+++++.+ ||+. .+..+.|+.+ ...|.+....
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 99999886 78899998 9974 5566677777 7777665544
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.06 E-value=5.2e-10 Score=103.89 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=62.1
Q ss_pred CCCCcccccc----hHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEe
Q 007764 203 DEVGYDDVGG----VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCIN 274 (590)
Q Consensus 203 ~~~~~~~i~G----~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~----~~~~~~v~ 274 (590)
.+.+|+++.+ ..+.++.+++++. ++.+.++.+++|+||||||||||++++++.+ +..++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456666554 3444444444443 3445568899999999999999999999887 55667788
Q ss_pred chhhhhhccchhHHH-HHHHHHHHHhcCCeEEEEcccccc
Q 007764 275 GPEIMSKLAGESESN-LRKAFEEAEKNAPSIIFIDEIDSI 313 (590)
Q Consensus 275 ~~~l~~~~~g~~~~~-~~~~f~~a~~~~p~iL~iDEid~l 313 (590)
..++........... ....++.. ..|.+|++||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 777765432211110 00122222 35789999998753
No 130
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.06 E-value=1.7e-10 Score=118.36 Aligned_cols=95 Identities=27% Similarity=0.425 Sum_probs=72.9
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vG 557 (590)
.+|+++.|.+.+++.+...+..... .-.+..++||+||||||||++|+++|..++.+|+.++++.+-
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~----- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE----- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----
Confidence 3788999999999888776543211 123556899999999999999999999999999999987652
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 558 ESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 558 ese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
....+..++.. ...+++||||||+.+.+
T Consensus 93 -~~~~~~~~~~~--~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 93 -KSGDLAAILTN--LSEGDILFIDEIHRLSP 120 (338)
T ss_dssp -SHHHHHHHHHT--CCTTCEEEEETGGGCCH
T ss_pred -chhHHHHHHHh--ccCCCEEEEechhhcCH
Confidence 23445555543 34668999999998865
No 131
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.5e-10 Score=116.77 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=60.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHh----------CCcEEEEeccchhhh----------h------ccchHHHHHHH
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTM----------W------FGESEANVREI 566 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v~~~el~~~----------~------vGese~~ir~~ 566 (590)
..+.+++|+||||||||+++++++.++ .+.++.++|..+.+. . .|++.+.++++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 357789999999999999999999998 457899998775433 2 24467789999
Q ss_pred HHHH--hhCCCeEEEEccccccc
Q 007764 567 FDKA--RQSAPCVLFFDELDSIA 587 (590)
Q Consensus 567 f~~A--r~~~p~vlf~DEid~l~ 587 (590)
|+.. ....++|+||||+|.|.
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHhhhccCCceEEEEecHHHhh
Confidence 9985 45678999999999985
No 132
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.03 E-value=5.5e-09 Score=109.94 Aligned_cols=205 Identities=13% Similarity=0.118 Sum_probs=123.6
Q ss_pred cccccchHHHHHHHHHHH-HcccCChhhhhhhCCCCCceEEE--ECCCCCcHHHHHHHHHHHh---------CCeEEEEe
Q 007764 207 YDDVGGVRKQMAQIRELV-ELPLRHPQLFKSIGVKPPKGILL--YGPPGSGKTLIARAVANET---------GAFFFCIN 274 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~vLL--~GppGtGKTtla~~la~~~---------~~~~~~v~ 274 (590)
.+++.|.+++++.|.+++ ......+ -..+..++| +||+|+|||++++.+++.+ +..+++++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 367999999999998887 5322110 023568999 9999999999999999876 44677888
Q ss_pred chhh------hhhcc----------ch-hHHHHHHHHHHHH-hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhh
Q 007764 275 GPEI------MSKLA----------GE-SESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 336 (590)
Q Consensus 275 ~~~l------~~~~~----------g~-~~~~~~~~f~~a~-~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~l 336 (590)
+... ..... +. .......+..... ...+.+|+|||++.+....... ...+..++.++
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHHH
Confidence 6431 11100 11 1111222222222 3558899999999986431111 23344455555
Q ss_pred hcccc-C--CeEEEEeecCCCC---CCc---hhhhccCCCceEEEecCCCHHHHHHHHHHHhcCC---CCCCccCHHHHH
Q 007764 337 DGLKS-R--AHVIVIGATNRPN---SID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIA 404 (590)
Q Consensus 337 d~~~~-~--~~v~vI~~tn~~~---~ld---~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~---~~~~~~~l~~la 404 (590)
..... . .++.+|++++.++ .++ +.+.+ ++...+.+++++.++..+++....... ....+..+..++
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 44321 2 5788888887654 223 44444 566669999999999999997654311 112334467777
Q ss_pred HhcC------CCCHHHHHHHHHHHHHHH
Q 007764 405 KDTH------GYVGADLAALCTEAALQC 426 (590)
Q Consensus 405 ~~t~------g~~~~dl~~l~~~a~~~~ 426 (590)
..+. |... .+..++..+...+
T Consensus 247 ~~~~~~~~~~G~p~-~~~~l~~~a~~~a 273 (412)
T 1w5s_A 247 DVYGEDKGGDGSAR-RAIVALKMACEMA 273 (412)
T ss_dssp HHHCGGGTSCCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHH-HHHHHHHHHHHHH
Confidence 8887 7643 3455565554443
No 133
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.02 E-value=2.6e-10 Score=121.23 Aligned_cols=92 Identities=27% Similarity=0.488 Sum_probs=68.6
Q ss_pred cccccccccchhh---hcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhh
Q 007764 478 VNWEDIGGLENVK---RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (590)
Q Consensus 478 v~~~~iggl~~vk---~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~ 554 (590)
-+|+++.|++++. +.|...+.. + ...+++|+||||||||++|+++|..++.+|+.+++..
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---- 85 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT---- 85 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----
Confidence 4678888988877 444444321 1 1257999999999999999999999999999998632
Q ss_pred hccchHHHHHHHHHHHhh----CCCeEEEEccccccccc
Q 007764 555 WFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQ 589 (590)
Q Consensus 555 ~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~~ 589 (590)
...+.++++|..|+. ..++||||||||.+.++
T Consensus 86 ---~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~ 121 (447)
T 3pvs_A 86 ---SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS 121 (447)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---
T ss_pred ---CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH
Confidence 345667888877763 46789999999998653
No 134
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.02 E-value=1.7e-10 Score=103.35 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=53.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
....++|+||||||||++|++++..+ +.+|+ ++++.+.+. ......|..|.. ++|||||||.+.+.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~~---g~l~ldei~~l~~~ 91 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQG---GTLVLSHPEHLTRE 91 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHTT---SCEEEECGGGSCHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcCC---cEEEEcChHHCCHH
Confidence 34579999999999999999999987 67899 999876543 345567777754 48999999998753
No 135
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.99 E-value=9e-11 Score=104.83 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=53.7
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
..+++|+||||||||++|++++..+. +|+.++++++...+ .+.+|+.|.. ++|||||+|.+.+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~~---~~l~lDei~~l~~~ 90 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAEG---GVLYVGDIAQYSRN 90 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTTT---SEEEEEECTTCCHH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCCC---CeEEEeChHHCCHH
Confidence 45799999999999999999999988 99999998876543 5677777753 59999999998653
No 136
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=4.1e-09 Score=106.19 Aligned_cols=142 Identities=11% Similarity=0.174 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCeEEEEechhhhhhccch
Q 007764 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET------GAFFFCINGPEIMSKLAGE 285 (590)
Q Consensus 212 G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~------~~~~~~v~~~~l~~~~~g~ 285 (590)
|.++.++.|+..+... . ...+|||||||+|||++++++++.+ ...++.+++.. . ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 5566777777776542 1 3589999999999999999999864 33566776542 0 11
Q ss_pred hHHHHHHHHHHHHhc----CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhh
Q 007764 286 SESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (590)
Q Consensus 286 ~~~~~~~~f~~a~~~----~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al 361 (590)
.-..++.+++.+... ...|+||||+|.+-. ...+.|+..++... ..+++|.+|+.+..+.+.+
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEep~--~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEEPP--EYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHSCC--TTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChHhChHHH
Confidence 234567777776432 246999999998842 23466777777543 3566666777788899999
Q ss_pred hccCCCceEEEecCCCHHHHHHHHHHHh
Q 007764 362 RRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (590)
Q Consensus 362 ~r~gRf~~~i~i~~P~~~~r~~Il~~~~ 389 (590)
++ | .+.++.|+.++..+.+....
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 98 7 78999999999888887665
No 137
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.96 E-value=2.1e-10 Score=116.16 Aligned_cols=105 Identities=22% Similarity=0.381 Sum_probs=66.7
Q ss_pred ccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhh----
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT---- 553 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~---- 553 (590)
.++.|++.+.+.+...+...... + .-.-+|...++|+||||||||++|+++|..+ +.+|+.++++++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~-~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---L-KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---C-SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---C-CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 34556777766666554321100 0 0012344579999999999999999999998 55699999877632
Q ss_pred -hhccchHHH-----HHHHHHHHhhCCCeEEEEccccccccc
Q 007764 554 -MWFGESEAN-----VREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 554 -~~vGese~~-----ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
.++|..... .+.+....+..+.+||||||+|++.+.
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~ 134 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPD 134 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHH
Confidence 223221100 023444445566799999999998764
No 138
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.94 E-value=8.1e-10 Score=112.72 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=59.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.+.+++|+||||||||+||+++|..+ +.+++.+++.++...+++.........|..+... +++|||||++.+..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKS-VDLLLLDDVQFLSG 112 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHT-CSEEEEECGGGGTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcC-CCEEEEcCcccccC
Confidence 45679999999999999999999998 8899999999988777766554444555555443 68999999999864
No 139
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.93 E-value=8.6e-10 Score=112.48 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=70.3
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vG 557 (590)
.+|+++.|.+++.+.|...+.. -..+..+|++||||||||++|+++|.+++.+|+.+++++. |
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~ 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C
T ss_pred CCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C
Confidence 4678889999888888776541 1334568888999999999999999999999999998763 2
Q ss_pred chHHHHHHHHHHHhhC-----CCeEEEEccccccc
Q 007764 558 ESEANVREIFDKARQS-----APCVLFFDELDSIA 587 (590)
Q Consensus 558 ese~~ir~~f~~Ar~~-----~p~vlf~DEid~l~ 587 (590)
...+++.+..+... .+.||||||+|.+.
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 45566655554332 57899999999986
No 140
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.91 E-value=6.4e-09 Score=130.48 Aligned_cols=128 Identities=19% Similarity=0.279 Sum_probs=89.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~ 321 (590)
..+..+.||+|||||.+++.+|+.+|.+++.++|++-+. ...+..+|..+... .+..++||++.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~------ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEE------ 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCH------
Confidence 346789999999999999999999999999999977543 23456667666543 46899999997632
Q ss_pred hhHHHHHHHHHHHhhh-------------c--cccCCeEEEEeecCC----CCCCchhhhccCCCceEEEecCCCHHHHH
Q 007764 322 GEVERRIVSQLLTLMD-------------G--LKSRAHVIVIGATNR----PNSIDPALRRFGRFDREIDIGVPDEVGRL 382 (590)
Q Consensus 322 ~~~~~~v~~~Ll~~ld-------------~--~~~~~~v~vI~~tn~----~~~ld~al~r~gRf~~~i~i~~P~~~~r~ 382 (590)
++..-+..++..... + +.-.....++.|+|+ ...+++.++. || +.+.+..||.+...
T Consensus 671 -~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 671 -RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIA 746 (3245)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHH
Confidence 222222222221111 1 222335667778884 2478899987 67 77999999999888
Q ss_pred HHHH
Q 007764 383 EVLR 386 (590)
Q Consensus 383 ~Il~ 386 (590)
+|+-
T Consensus 747 ei~L 750 (3245)
T 3vkg_A 747 QVML 750 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 141
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.91 E-value=3.4e-08 Score=107.50 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=51.6
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchh----hh--hcc----------------------ch
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----TM--WFG----------------------ES 559 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~----~~--~vG----------------------es 559 (590)
++.++.-++++||||||||||++.+|... +.+.+.+.+-+.. .. .+| ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 67778889999999999999999999765 3334444332210 00 001 12
Q ss_pred HHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 560 EANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 560 e~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
+...+.+..++....|.+|++|-+-.|
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 456678888888889999999955443
No 142
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.91 E-value=7.7e-10 Score=118.62 Aligned_cols=87 Identities=23% Similarity=0.433 Sum_probs=63.3
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh----------CCcEEEEec
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~----------~~~~i~v~~ 548 (590)
.++++.|.+...+.+.+.+. .....++||+||||||||++|+++|..+ +.+|+.+++
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCccCcHHHHHHHHHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 45677777766665554432 1345679999999999999999999996 778998888
Q ss_pred cchhhhhccchHHHHHHHHHHHhhCCCeEEEEc
Q 007764 549 PELLTMWFGESEANVREIFDKARQSAPCVLFFD 581 (590)
Q Consensus 549 ~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~D 581 (590)
+ ++|.|+.+..++.+|..++...|+|||+|
T Consensus 245 ~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 245 G---TKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred C---ccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 7 78999999999999999999999999999
No 143
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.90 E-value=1.1e-09 Score=111.59 Aligned_cols=96 Identities=27% Similarity=0.489 Sum_probs=70.0
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vG 557 (590)
.+|+++.|.+...+.+...+... .. .-.++.+++|+||||||||++|+++|..++.+|+.++++.+-
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~-------~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~----- 75 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAA-------KA-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE----- 75 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHH-------HH-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC-----
T ss_pred ccHHHhhCHHHHHHHHHHHHHHH-------Hc-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC-----
Confidence 46788889888888777665421 11 112456899999999999999999999999999999887652
Q ss_pred chHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 558 ESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 558 ese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
....+...|..+ ...+++|||||+|.+.+
T Consensus 76 -~~~~l~~~l~~~-~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 76 -KPGDLAAILANS-LEEGDILFIDEIHRLSR 104 (324)
T ss_dssp -SHHHHHHHHTTT-CCTTCEEEETTTTSCCH
T ss_pred -ChHHHHHHHHHh-ccCCCEEEEECCccccc
Confidence 233344444331 24578999999998864
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=1.6e-09 Score=97.40 Aligned_cols=100 Identities=15% Similarity=0.335 Sum_probs=65.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~ 317 (590)
++..++|+||+|+|||+|++++++.+ +...+++++.++... +....+.+|++||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 57899999999999999999999987 666788888776543 112357899999998753221
Q ss_pred CCCchhHHHHHHHHHHHhhhccccCCeE-EEEeecCCCCCCc--hhhhccCCCc
Q 007764 318 EKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPNSID--PALRRFGRFD 368 (590)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-~vI~~tn~~~~ld--~al~r~gRf~ 368 (590)
...|..+++........ +++++...|..+. +.+.+ |+.
T Consensus 100 -----------~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~ 140 (149)
T 2kjq_A 100 -----------QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMA 140 (149)
T ss_dssp -----------HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGG
T ss_pred -----------HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHh
Confidence 23455555544443333 5554444555443 56655 553
No 145
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.88 E-value=1.1e-08 Score=113.35 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=44.0
Q ss_pred cCCCCCcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
..++-.++++.|.+..++.+...+.. +.+++|+|||||||||+|+++++.++
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45667889999999998888766643 46999999999999999999999875
No 146
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.87 E-value=2.4e-09 Score=86.19 Aligned_cols=76 Identities=34% Similarity=0.633 Sum_probs=67.8
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhcc
Q 007764 373 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVT 452 (590)
Q Consensus 373 i~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 452 (590)
-.+|+.++|.+||+.+++++++..++++..+|..|.||+|+|+.++|++|++.++++. ...++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~ 70 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVT 70 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEEC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCC
Confidence 4689999999999999999999889999999999999999999999999999998875 24578
Q ss_pred HHHHHhhhcCCCC
Q 007764 453 DEHFKTALGTSNP 465 (590)
Q Consensus 453 ~~~~~~al~~~~p 465 (590)
.+||..++..+.|
T Consensus 71 ~~df~~Al~~v~p 83 (86)
T 2krk_A 71 QEDFEMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcc
Confidence 8899988876654
No 147
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.84 E-value=1.6e-09 Score=108.17 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=72.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
|+.++..++|+||||||||+|+.+++...+.. |+.....+..+.+..+.+..+..+++...... ++|||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 45667789999999999999999999875444 44442233333333455556666666665544 999999999865
Q ss_pred CCCCC--chhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhh
Q 007764 316 KREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (590)
Q Consensus 316 ~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al 361 (590)
..... .+.. .+.+.+++..+..+....++.++.++| +...++++
T Consensus 197 ~~~~~s~~G~v-~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGI-SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------C-CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchH-HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 44321 1111 233445555555444444667777888 44555554
No 148
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.83 E-value=2.6e-09 Score=113.52 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=59.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+.+++||||||||||+||+++|.++ +.+++.+.+.++.+.+++.........|.......++||||||++.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC
Confidence 5679999999999999999999998 7889999999887766654443333455555554678999999999864
No 149
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.83 E-value=1.7e-09 Score=111.31 Aligned_cols=53 Identities=30% Similarity=0.371 Sum_probs=39.9
Q ss_pred cCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 475 ~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.+...|+++.|.+++++.+...... ....++||+||||||||++|+++|..++
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3567899999998877654322111 1234699999999999999999999886
No 150
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.80 E-value=8.8e-09 Score=81.44 Aligned_cols=73 Identities=36% Similarity=0.665 Sum_probs=65.1
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccH
Q 007764 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTD 453 (590)
Q Consensus 374 ~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 453 (590)
|.|+.++|.+||+.+++++++..++++..++..|+||+|+|+..+|++|++.++++.. ..++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------VHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CCCCH
Confidence 6899999999999999999998899999999999999999999999999999988742 35778
Q ss_pred HHHHhhhcCC
Q 007764 454 EHFKTALGTS 463 (590)
Q Consensus 454 ~~~~~al~~~ 463 (590)
+||..++..+
T Consensus 64 ~d~~~Al~~v 73 (78)
T 3kw6_A 64 EDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 151
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.79 E-value=1.2e-09 Score=108.10 Aligned_cols=97 Identities=28% Similarity=0.336 Sum_probs=58.4
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC---CcEEEEeccchhhh-
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM- 554 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~---~~~i~v~~~el~~~- 554 (590)
+|+++.|.+...+.+.+.+... . ..+.+++|+||||||||++|++++..+. .+|+.++++++...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~----------~-~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHL----------A-PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHH----------T-TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHH----------h-CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4566667666555554433221 1 1246799999999999999999999885 67999998876321
Q ss_pred ----hccchHHH-------HHHHHHHHhhCCCeEEEEccccccccc
Q 007764 555 ----WFGESEAN-------VREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 555 ----~vGese~~-------ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
.+|..... ....|..| ..++||||||+.+.+.
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~ 115 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM 115 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH
Confidence 12211100 11234333 3469999999998753
No 152
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.77 E-value=7.6e-09 Score=107.68 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=67.5
Q ss_pred ccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh---------CCcEEEEeccch
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPEL 551 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~---------~~~~i~v~~~el 551 (590)
+++.|.+...+.+...+...+ .-..+.+++|+||||||||++|++++..+ +..|+.+++++.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 566677666666655443211 11345689999999999999999999988 788999998753
Q ss_pred hhh----------------hccchHH-HHHHHHHHHhhC-CCeEEEEcccccccc
Q 007764 552 LTM----------------WFGESEA-NVREIFDKARQS-APCVLFFDELDSIAT 588 (590)
Q Consensus 552 ~~~----------------~vGese~-~ir~~f~~Ar~~-~p~vlf~DEid~l~~ 588 (590)
.+. +.|.+.. ....+++.+... .|++|||||+|.+.+
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~ 144 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPK 144 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcc
Confidence 221 1233333 355666655443 488999999998864
No 153
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.75 E-value=1.7e-08 Score=96.14 Aligned_cols=93 Identities=28% Similarity=0.436 Sum_probs=63.7
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccch
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPEL 551 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el 551 (590)
...|+++.|.++..+.+.+.+.. ....+++|+||||||||++|++++..+ ...++.+.+++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 34577788888777777665432 122359999999999999999999886 456888877654
Q ss_pred hhhhccchHHHHHHHHHHH-h-----hCCCeEEEEcccccccc
Q 007764 552 LTMWFGESEANVREIFDKA-R-----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 552 ~~~~vGese~~ir~~f~~A-r-----~~~p~vlf~DEid~l~~ 588 (590)
.+ ...++..+... . ...+++|||||+|.+.+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH
Confidence 32 12233322222 2 25688999999999864
No 154
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.74 E-value=8.1e-09 Score=95.72 Aligned_cols=76 Identities=25% Similarity=0.282 Sum_probs=52.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHHHh----CCcEEEEeccchhhhhccchHH-HHHHHHHHHhhCCCeEEEEccc
Q 007764 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDEL 583 (590)
Q Consensus 509 ~~~~~~~~gvLL~GppGtGKTtLAkalA~~~----~~~~i~v~~~el~~~~vGese~-~ir~~f~~Ar~~~p~vlf~DEi 583 (590)
.+...++.+++|+||||||||||++++|+.+ +...+.+...+++..+...... ...++.+... .|.+|+|||+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~llilDE~ 109 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL--NSPVLVLDDL 109 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH--TCSEEEEETC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc--CCCEEEEeCC
Confidence 4455567889999999999999999999887 5567777888876654321111 0112233332 4679999999
Q ss_pred ccc
Q 007764 584 DSI 586 (590)
Q Consensus 584 d~l 586 (590)
++.
T Consensus 110 ~~~ 112 (180)
T 3ec2_A 110 GSE 112 (180)
T ss_dssp SSS
T ss_pred CCC
Confidence 853
No 155
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.69 E-value=2.2e-08 Score=80.95 Aligned_cols=74 Identities=30% Similarity=0.476 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHH
Q 007764 377 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHF 456 (590)
Q Consensus 377 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 456 (590)
|.++|.+||+.+++++++..++++..+|..|+||+|+|+.++|++|++.++++.. ..++.+||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHH
Confidence 5678999999999999999999999999999999999999999999999998753 24788999
Q ss_pred HhhhcCCCCCc
Q 007764 457 KTALGTSNPSA 467 (590)
Q Consensus 457 ~~al~~~~p~~ 467 (590)
..|+..+.++.
T Consensus 65 ~~Al~~v~~~~ 75 (88)
T 3vlf_B 65 LKAVDKVISGY 75 (88)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhcCc
Confidence 99998876654
No 156
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=2.7e-08 Score=102.32 Aligned_cols=93 Identities=24% Similarity=0.371 Sum_probs=63.4
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC------CcEEEEeccc
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPE 550 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~------~~~i~v~~~e 550 (590)
...|+++.|.+++.+.|...+.. ....+++|+||||||||++|+++|..+. ..++.+++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 44688899998888877766432 1123599999999999999999999864 4578887766
Q ss_pred hhhhhccchHHHHHHHHHHHh----------------hCCCeEEEEcccccccc
Q 007764 551 LLTMWFGESEANVREIFDKAR----------------QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 551 l~~~~vGese~~ir~~f~~Ar----------------~~~p~vlf~DEid~l~~ 588 (590)
..+ ...+++.+.... ...+.|||+||+|.+.+
T Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~ 147 (353)
T 1sxj_D 100 ERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA 147 (353)
T ss_dssp CCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH
T ss_pred ccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH
Confidence 421 122232222211 23457999999999865
No 157
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.67 E-value=2.9e-08 Score=93.74 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=47.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccchhH-HHHHHHHHHHHhcCCeEEEEccccccc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~g~~~-~~~~~~f~~a~~~~p~iL~iDEid~l~ 314 (590)
+.+++|+||||||||++++++++.+ +..++.++++++......... ......+..... +.+|+|||++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 3799999999999999999999987 567888888876654322110 011223333332 3599999997653
No 158
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.67 E-value=1.8e-08 Score=90.38 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=48.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
++..++|+||||||||+|+++++... +.+.+.+.+.++... +....|.+|+|||++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh
Confidence 56679999999999999999999988 667888888887543 1123467999999998754
No 159
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.67 E-value=1.1e-06 Score=89.75 Aligned_cols=184 Identities=17% Similarity=0.178 Sum_probs=106.9
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh------
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------ 279 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~------ 279 (590)
..+.+.|-+++++.|.+.+.. +..++|+||+|+|||+|++.+++..+ .+++++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 335688999999999887742 25899999999999999999999876 5666654321
Q ss_pred ------h---hccc-------------------------hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHH
Q 007764 280 ------S---KLAG-------------------------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE 325 (590)
Q Consensus 280 ------~---~~~g-------------------------~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~ 325 (590)
. ...+ .....+..+.+.+....|.+|+|||++.+...... ..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~----~~ 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR----GG 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT----TT
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc----ch
Confidence 0 0000 11111222222222234899999999988541100 01
Q ss_pred HHHHHHHHHhhhccccCCeEEEEeecCCCCCCchh-------hhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCC-Cc
Q 007764 326 RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA-------LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DD 397 (590)
Q Consensus 326 ~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~a-------l~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~-~~ 397 (590)
......|..+++.. .++.+|.++.....+... -.-.+|+...+.+++.+.++..+++.......... ..
T Consensus 149 ~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~ 225 (350)
T 2qen_A 149 KELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPE 225 (350)
T ss_dssp HHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCH
T ss_pred hhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 12333333333332 234444443321101110 00124666789999999999999988765433222 23
Q ss_pred cCHHHHHHhcCCCCHH
Q 007764 398 VDLERIAKDTHGYVGA 413 (590)
Q Consensus 398 ~~l~~la~~t~g~~~~ 413 (590)
..+..+...+.|+...
T Consensus 226 ~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 226 NEIEEAVELLDGIPGW 241 (350)
T ss_dssp HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCCHHH
Confidence 4567788888887653
No 160
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.66 E-value=3e-08 Score=101.54 Aligned_cols=94 Identities=33% Similarity=0.479 Sum_probs=64.0
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccc
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 558 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGe 558 (590)
++++..|.+.+++.+...+.... . .-.++.+++|+|||||||||||+++|++++.++....|+-+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~-------~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAK-------M-RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH-------H-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred cHHHccCcHHHHHHHHHHHHHHH-------h-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 45556666666665544432110 0 0124567999999999999999999999999988888765432
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 559 SEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 559 se~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
...++.++... ...+|+|+||++.+.+
T Consensus 90 -~~~l~~~~~~~--~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 90 -QGDMAAILTSL--ERGDVLFIDEIHRLNK 116 (334)
T ss_dssp -HHHHHHHHHHC--CTTCEEEEETGGGCCH
T ss_pred -HHHHHHHHHHc--cCCCEEEEcchhhcCH
Confidence 23455555432 3457999999999865
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=2.4e-08 Score=101.22 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=67.1
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchh
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELL 552 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~ 552 (590)
..|+++.|.+...+.|...+.. + +.+ +++|+||||||||++|+++|..+ +.+++.+++++..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 4567788888888877766431 1 122 39999999999999999999986 4568888876632
Q ss_pred hhhccchHHHHHHHHHHHh-------hCCCeEEEEcccccccc
Q 007764 553 TMWFGESEANVREIFDKAR-------QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 553 ~~~vGese~~ir~~f~~Ar-------~~~p~vlf~DEid~l~~ 588 (590)
+...++++++... ...+.||||||+|.+.+
T Consensus 85 ------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 85 ------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp ------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred ------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 2345666666655 33478999999998754
No 162
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.65 E-value=3.5e-08 Score=102.56 Aligned_cols=99 Identities=18% Similarity=0.291 Sum_probs=67.2
Q ss_pred cccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh------CCcEEEEeccchhh
Q 007764 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELLT 553 (590)
Q Consensus 480 ~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~------~~~~i~v~~~el~~ 553 (590)
.+++.|.+...+.|.+.+..... -..+..++|+||||||||+|+++++..+ +..++.+++.+..+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 35667777666666655432111 1345679999999999999999999988 88899998764321
Q ss_pred ------h----------hccchH-HHHHHHHHHHhhCC-CeEEEEccccccc
Q 007764 554 ------M----------WFGESE-ANVREIFDKARQSA-PCVLFFDELDSIA 587 (590)
Q Consensus 554 ------~----------~vGese-~~ir~~f~~Ar~~~-p~vlf~DEid~l~ 587 (590)
. ..|.+. .....+++...... |++|||||++.+.
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhh
Confidence 1 122222 33555665555443 8999999999876
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.65 E-value=1.5e-08 Score=102.58 Aligned_cols=97 Identities=26% Similarity=0.415 Sum_probs=65.4
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccch
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPEL 551 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el 551 (590)
...|+++.|.+++.+.+...+.. + ...+++|+||||||||++|+++|..+ +.+|+.+++++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 34678888999888888776532 1 12349999999999999999999986 446888888764
Q ss_pred hhhhccchHHHHHHHHHHH-h-hCCCeEEEEcccccccc
Q 007764 552 LTMWFGESEANVREIFDKA-R-QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 552 ~~~~vGese~~ir~~f~~A-r-~~~p~vlf~DEid~l~~ 588 (590)
.+ +......+.+..... . ...+.|+|+||+|.+.+
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 80 RG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (319)
T ss_dssp TC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH
T ss_pred cC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH
Confidence 32 111122222222111 1 24578999999998754
No 164
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.65 E-value=1.9e-08 Score=104.74 Aligned_cols=98 Identities=24% Similarity=0.340 Sum_probs=66.9
Q ss_pred ccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh-----------CCcEEEEecc
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----------QANFISVKGP 549 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~-----------~~~~i~v~~~ 549 (590)
+++.|.++..+.+...+.... .-..+.+++|+||||||||++|++++.++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV---------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH---------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 566777766666665443211 11345689999999999999999999988 8899999876
Q ss_pred chh-----------hhh-------ccch-HHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 550 ELL-----------TMW-------FGES-EANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 550 el~-----------~~~-------vGes-e~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+.. ... .|.+ ...+..+++.++...+ +|||||+|.+.+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~ 147 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVK 147 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhcc
Confidence 532 111 2322 3345666666655544 999999998864
No 165
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.63 E-value=2.1e-08 Score=94.67 Aligned_cols=69 Identities=33% Similarity=0.423 Sum_probs=49.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhhccch-HHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~vGes-e~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
.+++|+||||||||+||++++..+ +.+++.+..++++..+.... +..+.+++...... .+|||||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHS--SEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCC
Confidence 789999999999999999999988 56788888888766543211 11123444444443 49999999664
No 166
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.63 E-value=7.7e-09 Score=104.39 Aligned_cols=72 Identities=26% Similarity=0.416 Sum_probs=52.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhh-----hhccchH-------HHHHHHHHHHhhCCCeEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-----MWFGESE-------ANVREIFDKARQSAPCVL 578 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~-----~~vGese-------~~ir~~f~~Ar~~~p~vl 578 (590)
...++||+||||||||++|++++..+ +.+|+.++++.+-. ..+|... ......|+.|.. ++|
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~---g~L 100 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG---GTL 100 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTT---SEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCC---CEE
Confidence 35679999999999999999999976 56899999876532 1222210 012345666653 599
Q ss_pred EEcccccccc
Q 007764 579 FFDELDSIAT 588 (590)
Q Consensus 579 f~DEid~l~~ 588 (590)
|||||+.+.+
T Consensus 101 ~LDEi~~l~~ 110 (304)
T 1ojl_A 101 FLDEIGDISP 110 (304)
T ss_dssp EEESCTTCCH
T ss_pred EEeccccCCH
Confidence 9999999865
No 167
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.62 E-value=2.7e-08 Score=95.88 Aligned_cols=92 Identities=23% Similarity=0.422 Sum_probs=61.6
Q ss_pred ccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc----------------
Q 007764 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------------- 542 (590)
Q Consensus 479 ~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~---------------- 542 (590)
.|+++.|.+...+.|...+.. + ..+..++|+||||||||++|++++......
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 466777877777776665432 1 123469999999999999999999887542
Q ss_pred --------EEEEeccchhhhhccchHHHHHHHHHHHh----hCCCeEEEEcccccccc
Q 007764 543 --------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 543 --------~i~v~~~el~~~~vGese~~ir~~f~~Ar----~~~p~vlf~DEid~l~~ 588 (590)
++.+.... ......++++++.+. ...+.+|||||+|.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~ 140 (250)
T 1njg_A 89 IEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 140 (250)
T ss_dssp HHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH
T ss_pred HhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH
Confidence 23332221 112345677777654 33478999999998754
No 168
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.62 E-value=1e-06 Score=90.35 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=106.2
Q ss_pred CcccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh------
Q 007764 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------ 279 (590)
Q Consensus 206 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~------ 279 (590)
..+.+.|-+++++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++++++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 44568899999888876 421 3899999999999999999999987777777765320
Q ss_pred -hhccch---------------------------------------hHHHHHHHHHHHHhc--CCeEEEEcccccccCCC
Q 007764 280 -SKLAGE---------------------------------------SESNLRKAFEEAEKN--APSIIFIDEIDSIAPKR 317 (590)
Q Consensus 280 -~~~~g~---------------------------------------~~~~~~~~f~~a~~~--~p~iL~iDEid~l~~~~ 317 (590)
...... ....+..+++..... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 000000 011233444444332 38899999999886421
Q ss_pred CCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchh-------hhccCCCceEEEecCCCHHHHHHHHHHHhc
Q 007764 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA-------LRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (590)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~a-------l~r~gRf~~~i~i~~P~~~~r~~Il~~~~~ 390 (590)
... +...|..+.+.. .++.+|.+++....+... -.-.+|+...+.+++.+.++..+++.....
T Consensus 154 ~~~-------~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 154 GVN-------LLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TCC-------CHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred chh-------HHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 111 112222222321 134444444432111111 001246667899999999999999886553
Q ss_pred CCCCCCccCHHHHHHhcCCCCHH
Q 007764 391 NMKLSDDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 391 ~~~~~~~~~l~~la~~t~g~~~~ 413 (590)
......+ +...+...+.|+...
T Consensus 224 ~~~~~~~-~~~~i~~~t~G~P~~ 245 (357)
T 2fna_A 224 EADIDFK-DYEVVYEKIGGIPGW 245 (357)
T ss_dssp HHTCCCC-CHHHHHHHHCSCHHH
T ss_pred HcCCCCC-cHHHHHHHhCCCHHH
Confidence 2222222 237888899998653
No 169
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.61 E-value=4.2e-08 Score=78.49 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHH
Q 007764 377 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHF 456 (590)
Q Consensus 377 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 456 (590)
+.++|.+||+.+++++++..++++..++..|+||+|+|+..+|++|++.++++.. ..++.+||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR-----------------YIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC-----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHH
Confidence 6789999999999999998899999999999999999999999999998887642 45788999
Q ss_pred HhhhcCCCCCcc
Q 007764 457 KTALGTSNPSAL 468 (590)
Q Consensus 457 ~~al~~~~p~~~ 468 (590)
..++..+.|+..
T Consensus 65 ~~Al~~~~ps~~ 76 (83)
T 3aji_B 65 EKAYKTVIKKDE 76 (83)
T ss_dssp HHHHHHHCC---
T ss_pred HHHHHHHccCch
Confidence 999998887643
No 170
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.61 E-value=6.5e-08 Score=106.22 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=25.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+++.+.|.||+|+|||||++.|++.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4678999999999999999999999865
No 171
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.60 E-value=5.2e-09 Score=112.25 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=45.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCC--cEEEEec-----cchhhhhccchHHHHHHHHHHHhhC---CCeEEEEcccc
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG-----PELLTMWFGESEANVREIFDKARQS---APCVLFFDELD 584 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~--~~i~v~~-----~el~~~~vGese~~ir~~f~~Ar~~---~p~vlf~DEid 584 (590)
+.++||+||||||||+||+++|..++. +|..+.+ +++++.+.+..... ...|..+... .++|||||||+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHh
Confidence 468999999999999999999998853 3443333 34444443332222 2334333333 46899999999
Q ss_pred ccccc
Q 007764 585 SIATQ 589 (590)
Q Consensus 585 ~l~~~ 589 (590)
.+.+.
T Consensus 120 r~~~~ 124 (500)
T 3nbx_X 120 KAGPA 124 (500)
T ss_dssp GCCHH
T ss_pred hhcHH
Confidence 87654
No 172
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.59 E-value=4.9e-08 Score=97.53 Aligned_cols=76 Identities=22% Similarity=0.231 Sum_probs=60.3
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC--CcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~--~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
|+.++..++|+||||||||+||.++|...+ ..|+.....|.++.|-.+.+..++++++...... +||+||++.+.+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 455666689999999999999999998754 3488886677777666666778888888887765 999999998854
No 173
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.58 E-value=4.3e-08 Score=94.75 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhC---CcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~---~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
.+.+++|+||||||||++|+++|.++. .+++.+...++...+.. +++.. ..+.+|||||++.+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEGL--EQFDLICIDDVDAVAG 118 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTTG--GGSSEEEEETGGGGTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHhc--cCCCEEEEeccccccC
Confidence 456899999999999999999998874 67888888877654311 11111 3467999999998854
No 174
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=5.4e-08 Score=98.80 Aligned_cols=93 Identities=32% Similarity=0.516 Sum_probs=63.7
Q ss_pred CcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC-----CcEEEEeccch
Q 007764 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 551 (590)
Q Consensus 477 ~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~-----~~~i~v~~~el 551 (590)
...|+++.|.+++.+.|...+.. + ...+++|+||||||||++|+++|..+. .+++.+.+++.
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 34678889998888887765432 1 223599999999999999999999863 34788877664
Q ss_pred hhhhccchHHHHHHHHHH-Hh-----hCCCeEEEEcccccccc
Q 007764 552 LTMWFGESEANVREIFDK-AR-----QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 552 ~~~~vGese~~ir~~f~~-Ar-----~~~p~vlf~DEid~l~~ 588 (590)
.+. ..+++.+.. ++ ...+.+||+||+|.+.+
T Consensus 88 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 124 (327)
T 1iqp_A 88 RGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124 (327)
T ss_dssp HHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH
T ss_pred Cch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH
Confidence 321 122222222 11 14578999999998854
No 175
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.57 E-value=4.7e-09 Score=107.35 Aligned_cols=92 Identities=20% Similarity=0.289 Sum_probs=57.2
Q ss_pred ccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEecc-chh-hhhccc
Q 007764 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELL-TMWFGE 558 (590)
Q Consensus 481 ~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~-el~-~~~vGe 558 (590)
.++.|++++++.+...+. .+.++||+||||||||++|+++|..++.+|+.+.+. ++. +..+|.
T Consensus 27 ~~i~g~~~~~~~l~~~l~---------------~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGIC---------------TGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTCCSCHHHHHHHHHHHH---------------HTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred cceeCcHHHHHHHHHHHH---------------cCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 456677777665544322 135899999999999999999999999999998863 211 111221
Q ss_pred hHHH-HHHHHHHHhhCC---CeEEEEccccccccc
Q 007764 559 SEAN-VREIFDKARQSA---PCVLFFDELDSIATQ 589 (590)
Q Consensus 559 se~~-ir~~f~~Ar~~~---p~vlf~DEid~l~~~ 589 (590)
.-.. -..-|. .... .+|+||||++.+.+.
T Consensus 92 ~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~ 124 (331)
T 2r44_A 92 MIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK 124 (331)
T ss_dssp EEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH
T ss_pred eeecCCCCceE--eccCcccccEEEEEccccCCHH
Confidence 1000 000000 0111 279999999998653
No 176
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.55 E-value=3.3e-08 Score=107.28 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.6
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
.+.++.-+.|.||||||||||+|+|++..
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45677779999999999999999999876
No 177
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.54 E-value=1.2e-07 Score=102.98 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=25.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+++.+.|+||+|+|||||+++|++.+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999999999999865
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=1.6e-07 Score=96.71 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=37.4
Q ss_pred cccccccccchhhhccccee-ecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 478 VNWEDIGGLENVKRELQETV-QYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v-~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
.+|+++.|++.+.+.|...+ .. + ...+++|+|||||||||+++++|+++
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~-----------~--~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP-----------R--DLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT-----------T--CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35678888888888777664 21 1 12239999999999999999999964
No 179
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.50 E-value=7.2e-08 Score=110.09 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=26.5
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++..+.|.||||||||||.|+|++...
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456777799999999999999999998763
No 180
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.49 E-value=7.8e-08 Score=105.73 Aligned_cols=28 Identities=32% Similarity=0.460 Sum_probs=25.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+++.+.|.||+|+|||||+++|++.+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5788999999999999999999998864
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.49 E-value=5.4e-08 Score=100.89 Aligned_cols=93 Identities=23% Similarity=0.401 Sum_probs=64.2
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC----------------
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---------------- 541 (590)
..|+++.|.+++.+.|...+.. + +.+..++|+||+|||||++|+++|..+..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 3577888988888877776531 1 12346899999999999999999998854
Q ss_pred --------cEEEEeccchhhhhccchHHHHHHHHHHHhh----CCCeEEEEcccccccc
Q 007764 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIAT 588 (590)
Q Consensus 542 --------~~i~v~~~el~~~~vGese~~ir~~f~~Ar~----~~p~vlf~DEid~l~~ 588 (590)
+++.+.+..- .....++++++.+.. ..+.||||||+|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~ 133 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133 (373)
T ss_dssp HHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH
T ss_pred HHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH
Confidence 2333333210 112346777777653 3468999999998754
No 182
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.48 E-value=5.1e-08 Score=100.72 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=77.3
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
++++++++.++|+||||+||||+++++++..+..++.++.++-. ....+..+| +..++++||++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~------q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAI------DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGT------TCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhc------chhHHHHHHHHHHHH
Confidence 35889999999999999999999999999988776554433210 011122222 234679999998875
Q ss_pred -CCCCCc-hhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecC
Q 007764 316 -KREKTH-GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 375 (590)
Q Consensus 316 -~~~~~~-~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~ 375 (590)
.++... .... ....+.+.+++ .+.++.++|+++.+ +++.+++|++..+....
T Consensus 231 ~~r~l~~~~~~~--~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLPSGQGIN--NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCCCCSHHH--HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhccccCcch--HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 222111 1110 11233444554 24556789999999 68888888877666544
No 183
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.48 E-value=1.5e-07 Score=88.46 Aligned_cols=125 Identities=20% Similarity=0.256 Sum_probs=75.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh--------C-CeEEEEechhhhhhcc----------ch-----hHHHHHHHHHHHH
Q 007764 243 KGILLYGPPGSGKTLIARAVANET--------G-AFFFCINGPEIMSKLA----------GE-----SESNLRKAFEEAE 298 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~--------~-~~~~~v~~~~l~~~~~----------g~-----~~~~~~~~f~~a~ 298 (590)
...|++|+||||||++|..++... | .+++..+..++.-... .. ....+...+.. .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-P 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-G
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-c
Confidence 468999999999999988864432 3 4455555554432111 00 11122222111 2
Q ss_pred hcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCC
Q 007764 299 KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPD 377 (590)
Q Consensus 299 ~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~ 377 (590)
.+..++|+|||++.+.+.+....... .++..+...+ ...+-+|.+++++..++.+++. |+...+++..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~------rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIP------ENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCC------HHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccchhH------HHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 34577999999999976553222111 2344444322 3345566678889999999887 999988887654
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.48 E-value=2.4e-07 Score=96.40 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=62.6
Q ss_pred cccccccchhhhcccceeecccCChhhhhhcCCCCCc--eeEEECCCCCChhHHHHHHHHHh----CCcEEEEeccchhh
Q 007764 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK--GVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLT 553 (590)
Q Consensus 480 ~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~--gvLL~GppGtGKTtLAkalA~~~----~~~~i~v~~~el~~ 553 (590)
.+++.|.+...+.+...+..... + ..+. .++|+||||||||+++++++..+ +..++.++++...+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 35677777666666555432110 1 2334 79999999999999999999998 57789888655322
Q ss_pred h---------h-------ccchH-HHHHHHHHHHh-hCCCeEEEEccccccc
Q 007764 554 M---------W-------FGESE-ANVREIFDKAR-QSAPCVLFFDELDSIA 587 (590)
Q Consensus 554 ~---------~-------vGese-~~ir~~f~~Ar-~~~p~vlf~DEid~l~ 587 (590)
. . .|.+. .....+.+... ...|.||||||++.+.
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~ 138 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA 138 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc
Confidence 1 0 12222 22223333332 2458899999999874
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=1.4e-07 Score=96.77 Aligned_cols=92 Identities=25% Similarity=0.387 Sum_probs=61.5
Q ss_pred cccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC-----CcEEEEeccchh
Q 007764 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELL 552 (590)
Q Consensus 478 v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~-----~~~i~v~~~el~ 552 (590)
.+|+++.|++++.+.|...+.. + +. .+++|+|||||||||+|+++|+.+. ..++.++.++..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~-----------g-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE-----------G-KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------T-CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 4567777888877776655431 1 11 2499999999999999999999863 246777666531
Q ss_pred hhhccchHHHHHHHHHHHhh------CCCeEEEEcccccccc
Q 007764 553 TMWFGESEANVREIFDKARQ------SAPCVLFFDELDSIAT 588 (590)
Q Consensus 553 ~~~vGese~~ir~~f~~Ar~------~~p~vlf~DEid~l~~ 588 (590)
| -..+++......+ ..+.|+++||+|.+.+
T Consensus 89 ----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 89 ----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN 124 (340)
T ss_dssp ----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH
T ss_pred ----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH
Confidence 2 2344444433321 2368999999998753
No 186
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.43 E-value=1.1e-07 Score=96.07 Aligned_cols=71 Identities=25% Similarity=0.371 Sum_probs=49.4
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhC----CcEEEEeccchhhhhccch-HHHHHHHHHHHhhCCCeEEEEcccccc
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~----~~~i~v~~~el~~~~vGes-e~~ir~~f~~Ar~~~p~vlf~DEid~l 586 (590)
+..+++|+||||||||+||+++|.++. .+++.+..++++..+.+.. +..+.+.+...... .+|||||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNV--PVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTS--SEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCC
Confidence 357899999999999999999998664 6788888888876554321 22233344444333 59999999543
No 187
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=2.9e-07 Score=92.67 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=52.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh------CCcEEEEeccchhhhhccchHHHHHHHHHHHhhCC----CeEEEEccccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDS 585 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~------~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~----p~vlf~DEid~ 585 (590)
..+|||||||||||++|+++|..+ ..+|+.++++. .. -+-..+|++.+.|...+ ..|+|+||+|.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 479999999999999999999875 45777777542 11 12456899999997654 47999999999
Q ss_pred ccc
Q 007764 586 IAT 588 (590)
Q Consensus 586 l~~ 588 (590)
+.+
T Consensus 94 lt~ 96 (305)
T 2gno_A 94 MTQ 96 (305)
T ss_dssp BCH
T ss_pred hCH
Confidence 864
No 188
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=98.40 E-value=5.6e-06 Score=76.66 Aligned_cols=149 Identities=12% Similarity=0.048 Sum_probs=97.8
Q ss_pred EEEccccCC---CCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCCCCCeEEeCHHHHhhccccCCCeEEE
Q 007764 31 LVVDEAIND---DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSV 107 (590)
Q Consensus 31 ~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~i 107 (590)
++|..+..+ -.+++++||+... .+-+|+|.| ..++.+.+++.+++|.|.++..+|+|+++++||.|+|
T Consensus 8 l~v~~~P~~~la~TN~~~vsp~Df~-----~~~~v~v~~----~fVft~~~~~~i~~G~I~ls~~QR~wa~lsl~~~v~V 78 (189)
T 1cr5_A 8 LKVSNCPNNSYALANVAAVSPNDFP-----NNIYIIIDN----LFVFTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDVQA 78 (189)
T ss_dssp EEEEECCCHHHHTTTEEEECTTTSC-----SSCEEEETT----TEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEE
T ss_pred EEEEeCCChhhhhcceEEECHHHcC-----CCceEEEcC----cEEEEEecCCCCCCCEEecCHHHHHhhcccCCCeEEE
Confidence 556544332 3568999999885 334888832 4788999999999999999999999999999999999
Q ss_pred EEcccc------CCCceEEec--ccc--cc-ccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEEEeC--
Q 007764 108 HQCADV------KYGKRVHIL--PVD--DT-IEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD-- 174 (590)
Q Consensus 108 ~~~~~~------~~a~~v~~~--~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~-- 174 (590)
+++... .+...+.+. ... .. ...++.+.+...+...|. ..++.+|+.+.+...+..+.++|.++.
T Consensus 79 ~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~i~~~ 156 (189)
T 1cr5_A 79 KAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYE--SQIFSPTQYLIMEFQGHFFDLKIRNVQAI 156 (189)
T ss_dssp EECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHT--TCEECTTCEEEEEETTEEEEEEEEEEEEE
T ss_pred EEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEEEEEEe
Confidence 998321 122233331 111 11 122444444445555554 346889999887655555666776642
Q ss_pred --------------CCCeEEecCCceEEec
Q 007764 175 --------------PPEYCVVAPDTEIFCE 190 (590)
Q Consensus 175 --------------~~~~~~~~~~t~~~~~ 190 (590)
+...++++++|.+.+.
T Consensus 157 d~~~~~~~~~~~~~~~~~GiL~~~T~i~F~ 186 (189)
T 1cr5_A 157 DLGDIEPTSAVATGIETKGILTKQTQINFF 186 (189)
T ss_dssp CTTSSSCSSCCBCSTTCCEECCTTCEEEEE
T ss_pred ccccccccCcCCCCccceEEEcCCcEEEEE
Confidence 1236888888877543
No 189
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=98.40 E-value=5.3e-06 Score=78.32 Aligned_cols=154 Identities=9% Similarity=0.093 Sum_probs=101.8
Q ss_pred EEEccccCC---CCcEEEECHHHHHhcCCCCCCEEEEeccCCceEEEEEEcCCCCCCCeEEeCHHHHhhccccCCCeEEE
Q 007764 31 LVVDEAIND---DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSV 107 (590)
Q Consensus 31 ~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~i 107 (590)
++|..+..+ -..+|++||+... .+.+|.|........++.+.+++.+++|.|.++..+|+|+++.+||.|+|
T Consensus 10 l~v~~~P~~~la~TN~~~vsp~Df~-----~~~~v~v~~~~~~~fVft~~~~~~i~~G~Igls~~QR~wa~lsl~~~v~V 84 (211)
T 1qcs_A 10 MQAARCPTDELSLSNCAVVSEKDYQ-----SGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQEIEV 84 (211)
T ss_dssp EEEEECSCHHHHHHTCEEECTTTCC-----TTCEEEEEEETTEEEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEE
T ss_pred EEEecCCChhhhhcceEEECHHHcC-----CCceEEEEecCCCeEEEEEecCCCCCCCEeecCHHHHhhhcccCCCcEEE
Confidence 566555432 2457999999874 45567884323347899999999999999999999999999999999999
Q ss_pred EEcccc---CCCceEEe--cccc--cc-ccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEEEeC-----
Q 007764 108 HQCADV---KYGKRVHI--LPVD--DT-IEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD----- 174 (590)
Q Consensus 108 ~~~~~~---~~a~~v~~--~~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~----- 174 (590)
+++... .+...+.+ .... .. ...++.+.+...+...|. ..++.+|+.+.+...+..+.++|.+++
T Consensus 85 ~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~v~~~d~~ 162 (211)
T 1qcs_A 85 ALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFN--NQAFSVGQQLVFSFNDKLFGLLVKDIEAMDPS 162 (211)
T ss_dssp EEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHT--TCEEETTCEEEEEETTEEEEEEEEEEEECCCC
T ss_pred EEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEeEEEEeccc
Confidence 998421 12223333 1121 11 122333444444555554 346889999887655555667776631
Q ss_pred ------------CCCeEEecCCceEEecC
Q 007764 175 ------------PPEYCVVAPDTEIFCEG 191 (590)
Q Consensus 175 ------------~~~~~~~~~~t~~~~~~ 191 (590)
+...++++++|.|.+..
T Consensus 163 ~~~~~~~~~~~~~~~~GiL~~~T~i~F~k 191 (211)
T 1qcs_A 163 ILKGEPASGKRQKIEVGLVVGNSQVAFEK 191 (211)
T ss_dssp TTC-------CCBCSEEECCTTCEEEEEE
T ss_pred ccccCcccccCCCcceeEEcCCcEEEEEE
Confidence 13468999999886543
No 190
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.39 E-value=1.5e-06 Score=90.51 Aligned_cols=121 Identities=25% Similarity=0.339 Sum_probs=75.4
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhhc--
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKL-- 282 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~---~~~~~v~~~~l~~~~-- 282 (590)
..+.|.+...+++.+.+... .....+++|+|++|||||++|+++....+ .+|+.++|..+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 34666666666666555431 13346799999999999999999988754 679999997653221
Q ss_pred ---cc--------hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc---------cC
Q 007764 283 ---AG--------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SR 342 (590)
Q Consensus 283 ---~g--------~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~ 342 (590)
.| .... ....|+.|. ..+||+|||+.+.. .+...|+..++.-. ..
T Consensus 206 ~elfg~~~g~~tga~~~-~~g~~~~a~---~gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSS-KEGFFELAD---GGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSC-BCCHHHHTT---TSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccc-cCCceeeCC---CcEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 11 1000 112344443 35999999998842 23345555554311 12
Q ss_pred CeEEEEeecCCC
Q 007764 343 AHVIVIGATNRP 354 (590)
Q Consensus 343 ~~v~vI~~tn~~ 354 (590)
.++.+|++||..
T Consensus 271 ~~~rii~at~~~ 282 (387)
T 1ny5_A 271 VNVRILAATNRN 282 (387)
T ss_dssp CCCEEEEEESSC
T ss_pred ccEEEEEeCCCC
Confidence 357789999874
No 191
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.38 E-value=1.2e-06 Score=97.97 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHH
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIA 536 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA 536 (590)
+.+.++.-+.|.||||||||||++++.
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 345567779999999999999997654
No 192
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.36 E-value=2.1e-07 Score=93.95 Aligned_cols=70 Identities=20% Similarity=0.396 Sum_probs=46.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEechhhhhhccchh-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~----~~~~~v~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~iL~iDEid~l 313 (590)
+.+++|+||||||||+||++++..+. ..++.++.+++........ .......+.... .+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 57999999999999999999998654 6778888887765433211 111112222222 3459999999654
No 193
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=98.32 E-value=2.7e-06 Score=66.91 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=58.2
Q ss_pred CCceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEEEeCCCCeEEecCCceEEecC
Q 007764 115 YGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEG 191 (590)
Q Consensus 115 ~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~t~~~~~~ 191 (590)
.|++|.++|.+ .+. +.++ +..+++++|. .|||.+||.+.+...++.+.|+|++++|. .++++++|.|.+..
T Consensus 11 ~A~kVvLAP~~-~i~-~~~~-~~~~lk~~L~--grPV~~GD~I~i~~~G~~i~F~Vv~t~P~-~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 11 IMSELKLKPLP-KVE-LPPD-FVDVIRIKLQ--GKTVRTGDVIGISILGKEVKFKVVQAYPS-PLRVEDRTKITLVT 81 (83)
T ss_dssp CCCEEEEEESS-SCC-CCHH-HHHHHHHHHT--TSEECTTCEEEEEETTEEEEEEEEEEESS-SEECCTTSEEEECC
T ss_pred EEEEEEEcCCC-cee-cCcc-HHHHHHHHHC--CCCccCCCEEEEeeCCCEEEEEEEEecCc-cEEECCCcEEEEEe
Confidence 57889999985 333 4333 4679999996 59999999999875568899999999999 99999999998854
No 194
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.29 E-value=5e-06 Score=76.70 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCe
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAF 269 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~ 269 (590)
.+.|+||+|+|||||++.|++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999987633
No 195
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.27 E-value=3.4e-07 Score=72.94 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccchhhhhHHHhhhhhccHHHHHh
Q 007764 379 VGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKT 458 (590)
Q Consensus 379 ~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 458 (590)
++|.+||+.+++++++..++++..++..|+||+|+|+.++|++|++.++++.. ..++.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHH
Confidence 36889999999999988899999999999999999999999999999988742 3578899999
Q ss_pred hhcCCC
Q 007764 459 ALGTSN 464 (590)
Q Consensus 459 al~~~~ 464 (590)
++..+.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 998774
No 196
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.25 E-value=5e-08 Score=107.37 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=57.6
Q ss_pred cccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEE----eccchhhhhc-
Q 007764 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV----KGPELLTMWF- 556 (590)
Q Consensus 482 ~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v----~~~el~~~~v- 556 (590)
.+.|++++|+.+.-.+... +...+....++...++||+||||||||+||+++|..+...++.. .+.++....+
T Consensus 296 ~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 4567888877764432211 11111111233344799999999999999999999987655432 1122221111
Q ss_pred ----cchHHHHHHHHHHHhhCCCeEEEEccccccccc
Q 007764 557 ----GESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (590)
Q Consensus 557 ----Gese~~ir~~f~~Ar~~~p~vlf~DEid~l~~~ 589 (590)
|+... -...+..|. .+|+||||||++.+.
T Consensus 374 ~~~~g~~~~-~~G~l~~A~---~gil~IDEid~l~~~ 406 (595)
T 3f9v_A 374 EKGTGEYYL-EAGALVLAD---GGIAVIDEIDKMRDE 406 (595)
T ss_dssp GGGTSSCSE-EECHHHHHS---SSEECCTTTTCCCSH
T ss_pred ccccccccc-cCCeeEecC---CCcEEeehhhhCCHh
Confidence 11100 012233443 359999999998764
No 197
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.25 E-value=1e-06 Score=82.02 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=27.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCeE
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFF 270 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~~~~~ 270 (590)
++...+++|+||||||||++|.++++.+...+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 45567899999999999999999999986554
No 198
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.21 E-value=4e-07 Score=100.72 Aligned_cols=52 Identities=29% Similarity=0.494 Sum_probs=40.1
Q ss_pred ccCCcccccccccchhhhcccceeecccCChhhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 474 ~~~~v~~~~iggl~~vk~~L~~~v~~~~~~~~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
..+...|+++.|++.+.+.+...+. .+..++|+|||||||||||+++|+.+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3445667888888777765544432 346899999999999999999999884
No 199
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.21 E-value=2.4e-06 Score=87.24 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=50.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCC------------------------cEEEEeccchhhhhccchHHHHHHHHHH
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 569 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~------------------------~~i~v~~~el~~~~vGese~~ir~~f~~ 569 (590)
.+..+||+||||+|||++|+++|..+.. +++.+.+.+- +.. -+-..+|++.+.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~~--~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNT--LGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSS--BCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CCC--CCHHHHHHHHHH
Confidence 3456999999999999999999998743 3444443210 001 123568888888
Q ss_pred HhhC----CCeEEEEcccccccc
Q 007764 570 ARQS----APCVLFFDELDSIAT 588 (590)
Q Consensus 570 Ar~~----~p~vlf~DEid~l~~ 588 (590)
+... .+.|+++||+|.+.+
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~ 122 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTD 122 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCH
T ss_pred HhhccccCCcEEEEECchhhcCH
Confidence 7643 468999999999864
No 200
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.19 E-value=2.8e-06 Score=78.36 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.1
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCc
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQAN 542 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~ 542 (590)
.+.|+||||||||||++.|++..+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999998644
No 201
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.18 E-value=9.1e-07 Score=91.35 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=48.8
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el~~~~vGese~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
+++.++..++|+||||||||||+++||+..+..++.+.+++-- +...++.+| ..+++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~------q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAI------DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGT------TCSCEEETTCCCSTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhc------chhHHHHHHHHHHHH
Confidence 3677888899999999999999999999998887766555421 011233333 235789999998764
No 202
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.18 E-value=3.7e-06 Score=81.33 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=51.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH--h-------CCeEEEEechhh------hh--hccc----------------
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANE--T-------GAFFFCINGPEI------MS--KLAG---------------- 284 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~--~-------~~~~~~v~~~~l------~~--~~~g---------------- 284 (590)
|+.++..++|+||||+|||||++.++.. . +...+++++.+. .. ...+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5788999999999999999999999985 3 345677766441 00 0000
Q ss_pred hhH---HHHHHHHHHHHhcCCeEEEEcccccccCC
Q 007764 285 ESE---SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (590)
Q Consensus 285 ~~~---~~~~~~f~~a~~~~p~iL~iDEid~l~~~ 316 (590)
..+ ..+..+.+......|.+++|||+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 011 11222334444567999999999987654
No 203
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.13 E-value=7.1e-06 Score=78.58 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=29.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCIN 274 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~ 274 (590)
|+.++..++|+||||+|||||++.++... +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56788999999999999999999998654 44455544
No 204
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=7e-05 Score=68.16 Aligned_cols=140 Identities=16% Similarity=0.264 Sum_probs=101.8
Q ss_pred CCcEEEECHHHHHhcC---CCCCCEEEEeccC-CceEEEEEEcCCCCCCCeEEeCHHHHhhccccCCCeEEEEEccccCC
Q 007764 40 DNSVVVLHPDTMEKLQ---FFRGDTILIKGKK-RKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKY 115 (590)
Q Consensus 40 ~~~~v~~~~~~~~~l~---~~~g~~v~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~i~~~~~~~~ 115 (590)
..+.|.|.|++|++|. +.--=.-+|++.+ .+.+.|-|.. -.-+.|.|-|+.-+.+++++..||.|+|+.+ .+|.
T Consensus 39 ~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlE-FsA~EG~i~lP~wmm~~L~l~~gd~V~v~~~-~LPk 116 (190)
T 2yuj_A 39 KGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLE-FVADEGICYLPHWMMQNLLLEEGGLVQVESV-NLQV 116 (190)
T ss_dssp TTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEE-CCCBTTBEECCSHHHHHHTCCTTEEEEEEEE-CCCC
T ss_pred CCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEE-EecCCCeEEeCHHHHHhcCCCCCCEEEEEEe-ecCC
Confidence 4568999999998874 2211245666653 3445665553 3345789999999999999999999999974 7899
Q ss_pred CceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEEEeCCCC-eEEecCC
Q 007764 116 GKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPE-YCVVAPD 184 (590)
Q Consensus 116 a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~ 184 (590)
++.|.+.|.+...-.+ +...+.|...+. .+..++.||++.+..+...+.|+|++++|.. .+++..+
T Consensus 117 gt~vklqP~~~~Fl~i--~npKavLE~~Lr-nfstLT~Gd~I~I~~~~~~y~l~V~e~kP~~aV~IidTD 183 (190)
T 2yuj_A 117 ATYSKFQPQSPDFLDI--TNPKAVLENALR-NFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECD 183 (190)
T ss_dssp CSEEEEEESSHHHHHS--SCHHHHHHHHHT-TCCEECTTCEEEEESSSCEEEEEEEEESSSSSEECSSCC
T ss_pred CcEEEEEECCcccccc--ccHHHHHHHHHh-cCcccccCCEEEEEeCCEEEEEEEEEEcCCCeEEEEeCC
Confidence 9999999976432222 224556666664 3567999999999888888999999999975 3444333
No 205
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.07 E-value=1.5e-05 Score=81.45 Aligned_cols=113 Identities=22% Similarity=0.361 Sum_probs=68.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh----------------ccchhHHHHHHHHHHHH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----------------LAGESESNLRKAFEEAE 298 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 298 (590)
|+.++.-++|+||||||||||+..++..+ +..++++++.+.... .....+..+..+-...+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 46788999999999999999999998774 556777776542110 01112222322222333
Q ss_pred hcCCeEEEEcccccccCCC--CCCchh----HHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 299 KNAPSIIFIDEIDSIAPKR--EKTHGE----VERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 299 ~~~p~iL~iDEid~l~~~~--~~~~~~----~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
...+.+++||.+..+.+.. ....++ ...+.+.+++..+..+....++.+|.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678999999999887621 111111 234556666666666555555555544
No 206
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=7.5e-05 Score=68.86 Aligned_cols=144 Identities=17% Similarity=0.253 Sum_probs=103.3
Q ss_pred CcEEEECHHHHHhcC---CCCCCEEEEeccC-CceEEEEEEcCCCCCCCeEEeCHHHHhhccccCCCeEEEEEccccCCC
Q 007764 41 NSVVVLHPDTMEKLQ---FFRGDTILIKGKK-RKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYG 116 (590)
Q Consensus 41 ~~~v~~~~~~~~~l~---~~~g~~v~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~i~~~~~~~~a 116 (590)
.+.|.|.|++|++|. +.-==.-+|++.. .+.+.|-|.. -.-+.|.|-|+.-+.+++++..||.|+|+. ..+|.+
T Consensus 45 GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlE-F~A~EG~v~lP~wmm~~L~l~~gd~V~i~~-~~LPkg 122 (208)
T 1zc1_A 45 GGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLE-FIAEEGRVYLPQWMMETLGIQPGSLLQISS-TDVPLG 122 (208)
T ss_dssp SSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEE-ECCSSCEEEECHHHHHHHTCCTTCEEEEEE-EECCCC
T ss_pred CCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEE-EEcCCCeEEcCHHHHHhcCCCCCCEEEEEE-eEcCCC
Confidence 458999999998875 2212234555543 3456666653 233568999999999999999999999997 479999
Q ss_pred ceEEeccccccccCcchhhHHHHhhHHhhhcCCcccCCcEEEEeecceeEEEEEEEeCCCC----eEEecCCceEEe
Q 007764 117 KRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPE----YCVVAPDTEIFC 189 (590)
Q Consensus 117 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~t~~~~ 189 (590)
+-|.+.|.+.....+ .-..+.|...+. .+..++.||++.+..+...++|.|.+++|.. .+++..+-++.+
T Consensus 123 t~vklqP~~~~Fldi--~npKavLE~~LR-nfstLT~Gd~I~i~~~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf 196 (208)
T 1zc1_A 123 QFVKLEPQSVDFLDI--SDPKAVLENVLR-NFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDF 196 (208)
T ss_dssp SEEEEECCHHHHHTS--SCHHHHHHHHHH-HCSCEESSSEEEEEETTEEEEEEEEEEECSSTTCEECCSSSCSEEEE
T ss_pred CEEEEeECccccccc--cCHHHHHHHHhh-cCccccCCCEEEEEeCCEEEEEEEEEEcCCCCCceEEEEeCceEEEe
Confidence 999999966433222 223445555554 3567999999999988888999999999985 455554444433
No 207
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.06 E-value=1.3e-06 Score=81.30 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=26.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFI 544 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i 544 (590)
...+++||||||||||++|.++|..+....+
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 3457999999999999999999999865433
No 208
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.06 E-value=9.4e-06 Score=77.08 Aligned_cols=40 Identities=28% Similarity=0.339 Sum_probs=33.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~ 277 (590)
|+.++..++|+||||+|||||++.++...+...++++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5788999999999999999999999986666777776543
No 209
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.04 E-value=5.9e-06 Score=79.09 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=26.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
|+.++..+.|+||||+|||||++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999999854
No 210
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.02 E-value=1.4e-05 Score=82.56 Aligned_cols=121 Identities=25% Similarity=0.443 Sum_probs=74.1
Q ss_pred cccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhhhc----
Q 007764 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMSKL---- 282 (590)
Q Consensus 209 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~--~~~v~~~~l~~~~---- 282 (590)
++.|.+....++.+.+.... .....++++|++||||+++|+++....+.. |+.+||..+-...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 46677776666665554311 234579999999999999999998876543 9999997653211
Q ss_pred -cchh----H---HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccc-----c----CCeE
Q 007764 283 -AGES----E---SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RAHV 345 (590)
Q Consensus 283 -~g~~----~---~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~~v 345 (590)
.|.. . ......|+.+. ...||+|||+.+.. .....|+..++.-. . ..++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQ-----------RVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCH-----------HHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCCH-----------HHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 1100 0 00112344443 34899999998842 23355666554311 1 1256
Q ss_pred EEEeecCCC
Q 007764 346 IVIGATNRP 354 (590)
Q Consensus 346 ~vI~~tn~~ 354 (590)
.+|++||..
T Consensus 265 rii~at~~~ 273 (368)
T 3dzd_A 265 RVISATNKN 273 (368)
T ss_dssp EEEEEESSC
T ss_pred EEEEecCCC
Confidence 788899864
No 211
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.02 E-value=7.3e-06 Score=84.39 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 35568899999999999999999999998753
No 212
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.99 E-value=7.8e-06 Score=80.44 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.+++.+.|.||+|+|||||+++|++..
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456789999999999999999999999865
No 213
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.98 E-value=4e-06 Score=82.32 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=50.7
Q ss_pred hhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC---cEEEEeccc--hhh---------hhccchHHHHHHHHHHHh
Q 007764 506 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPE--LLT---------MWFGESEANVREIFDKAR 571 (590)
Q Consensus 506 ~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~---~~i~v~~~e--l~~---------~~vGese~~ir~~f~~Ar 571 (590)
.++.+.+.++.-+++.|||||||||+++++++.... --|.+.+-. ++. ..+|......+..+.+|-
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH
Confidence 444555667777999999999999999999987632 223333321 110 011212234566777776
Q ss_pred hCCCeEEEEccc
Q 007764 572 QSAPCVLFFDEL 583 (590)
Q Consensus 572 ~~~p~vlf~DEi 583 (590)
...|.+|++||.
T Consensus 96 ~~~p~illlDEp 107 (261)
T 2eyu_A 96 REDPDVIFVGEM 107 (261)
T ss_dssp HHCCSEEEESCC
T ss_pred hhCCCEEEeCCC
Confidence 668999999998
No 214
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.96 E-value=1e-05 Score=82.86 Aligned_cols=78 Identities=29% Similarity=0.421 Sum_probs=50.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----hccc------------hhHHHHHHHHHHHH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----KLAG------------ESESNLRKAFEEAE 298 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~----~~~g------------~~~~~~~~~f~~a~ 298 (590)
|+.++..++|+||||+|||||+..++... +..+++++...... ...| ..++.+..+.....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56788999999999999999999988654 45666666543211 1111 12222222222333
Q ss_pred hcCCeEEEEcccccccC
Q 007764 299 KNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 299 ~~~p~iL~iDEid~l~~ 315 (590)
...|.+++||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 45689999999999874
No 215
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.96 E-value=4.2e-06 Score=76.67 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHH
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARA 261 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~ 261 (590)
+.+.+++.++|+||+|||||||+++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 4457789999999999999999994
No 216
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.96 E-value=2.5e-05 Score=79.91 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechhh---------hhhcc---------------c
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEI---------MSKLA---------------G 284 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---------~~~~~~v~~~~l---------~~~~~---------------g 284 (590)
|++++.-++|+||||+|||+|+..++... +...++++.... ...+. .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 67889999999999999999999998862 456677766442 10000 0
Q ss_pred hhH---HHHHHHHHHHHh--cCCeEEEEcccccccCCCCCCchhHHH--HHHHHHHHhhhccccCCeEEEEeecCC
Q 007764 285 ESE---SNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVER--RIVSQLLTLMDGLKSRAHVIVIGATNR 353 (590)
Q Consensus 285 ~~~---~~~~~~f~~a~~--~~p~iL~iDEid~l~~~~~~~~~~~~~--~v~~~Ll~~ld~~~~~~~v~vI~~tn~ 353 (590)
..+ ..+..+...... ..+.+++||.+..+........++... ..+.+++..+..+....++.+|.+.+.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 011 112222233444 678899999999887432111112221 123444444444444445555554443
No 217
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.95 E-value=8.8e-06 Score=80.38 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=27.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4567899999999999999999999998753
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.94 E-value=2.4e-05 Score=75.85 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=29.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHH--HH--hCCeEEEEec
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVA--NE--TGAFFFCING 275 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la--~~--~~~~~~~v~~ 275 (590)
|+.++..++|+||+|+|||||++.++ .. .+...+.+++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 67889999999999999999999998 33 2344444443
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.94 E-value=2.7e-05 Score=80.04 Aligned_cols=115 Identities=21% Similarity=0.386 Sum_probs=66.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc----cc-----------hhHHHHHHHHHHH-H
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL----AG-----------ESESNLRKAFEEA-E 298 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~----~g-----------~~~~~~~~~f~~a-~ 298 (590)
|++++..++|+||||+|||+|+..++... +..+++++...-.... .| ...+.+...+... +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 46788899999999999999999887664 5567777654321110 00 1112223333332 3
Q ss_pred hcCCeEEEEcccccccCCCCCC--chh----HHHHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 299 KNAPSIIFIDEIDSIAPKREKT--HGE----VERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 299 ~~~p~iL~iDEid~l~~~~~~~--~~~----~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
...+.+||||.+..+.+..... .++ ...+.+.+++..+..+....++.+|.+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4568899999999997532211 011 22244445555554444555666665543
No 220
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.94 E-value=1.3e-05 Score=81.98 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35578899999999999999999999998753
No 221
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.93 E-value=2.2e-05 Score=81.65 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=66.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechhhhh--------hccc----------------
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEIMS--------KLAG---------------- 284 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---------~~~~~~v~~~~l~~--------~~~g---------------- 284 (590)
|+.++..++|+||||||||||++.++-.. +...+++++.+... ...+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 78899999999999999999999776332 23467776643210 0001
Q ss_pred ---hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchhH--HHHHHHHHHHhhhccccCCeEEEEeecCC
Q 007764 285 ---ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV--ERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (590)
Q Consensus 285 ---~~~~~~~~~f~~a~~~~p~iL~iDEid~l~~~~~~~~~~~--~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~ 353 (590)
.....+..+........|.++++|++..+....-...+.+ ..+.+.+++..+..+....++.+|.+++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222333344456789999999998876432211222 23334556666655554445666666654
No 222
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.93 E-value=1e-05 Score=84.64 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=47.4
Q ss_pred CceeEE--ECCCCCChhHHHHHHHHHh---------CCcEEEEeccch------hhh---hc-------cchH-HHHHHH
Q 007764 515 SKGVLF--YGPPGCGKTLLAKAIANEC---------QANFISVKGPEL------LTM---WF-------GESE-ANVREI 566 (590)
Q Consensus 515 ~~gvLL--~GppGtGKTtLAkalA~~~---------~~~~i~v~~~el------~~~---~v-------Gese-~~ir~~ 566 (590)
+..+++ +||+|+|||+|+++++... +..++.+.+.+. +.. .+ |.+. .....+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 456889 9999999999999999876 456777775332 111 11 2222 222333
Q ss_pred HHHHh-hCCCeEEEEcccccccc
Q 007764 567 FDKAR-QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 567 f~~Ar-~~~p~vlf~DEid~l~~ 588 (590)
.+... ...|.+|||||++.+..
T Consensus 130 ~~~l~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 130 VDNLYVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp HHHHHHHTCEEEEEEESTHHHHS
T ss_pred HHHHHhcCCeEEEEEeCHHHHhh
Confidence 33222 35588999999998753
No 223
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.92 E-value=1.3e-05 Score=81.97 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=27.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|||||||+++|++...
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4568899999999999999999999998753
No 224
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.92 E-value=1.8e-05 Score=80.34 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=65.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechhh---------hhhc------------cc---
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEI---------MSKL------------AG--- 284 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---------~~~~~~v~~~~l---------~~~~------------~g--- 284 (590)
|++++..++|+||||+|||+++..++... +...++++.... ...+ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 67889999999999999999999998864 456677776432 1100 00
Q ss_pred hhH---HHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchhHH--HHHHHHHHHhhhccccCCeEEEEeecC
Q 007764 285 ESE---SNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVE--RRIVSQLLTLMDGLKSRAHVIVIGATN 352 (590)
Q Consensus 285 ~~~---~~~~~~f~~a~~-~~p~iL~iDEid~l~~~~~~~~~~~~--~~v~~~Ll~~ld~~~~~~~v~vI~~tn 352 (590)
..+ ..+..+...... ..+.+++||.+..+........++.. ...+.+++..+..+....++.+|.+.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 011 122233334444 67899999999988643211111111 123444444444444434455554443
No 225
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.90 E-value=1.8e-05 Score=81.18 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=33.8
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPE 277 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~---------~~~~~~v~~~~ 277 (590)
.|++++..+.|+||||+|||||++.++... +...+++++.+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 468899999999999999999999999886 23557776643
No 226
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.89 E-value=1.6e-05 Score=76.74 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35578899999999999999999999988653
No 227
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.89 E-value=1.7e-05 Score=81.31 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 34568899999999999999999999998753
No 228
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.87 E-value=1.5e-05 Score=81.50 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=27.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|||||||+++|++...
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4567889999999999999999999998753
No 229
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.87 E-value=1.9e-05 Score=80.94 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35568899999999999999999999998753
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.87 E-value=2.3e-05 Score=75.57 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=51.5
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---------CCcEEEEeccchh-----h---hhccc---------------
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELL-----T---MWFGE--------------- 558 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---------~~~~i~v~~~el~-----~---~~vGe--------------- 558 (590)
++.++.-++|+||||||||||++.+|... +...+.+.+.+.+ . ..+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 56777889999999999999999999852 3456666665411 0 01111
Q ss_pred h-H---HHHHHHHHHHhhCCCeEEEEccccccc
Q 007764 559 S-E---ANVREIFDKARQSAPCVLFFDELDSIA 587 (590)
Q Consensus 559 s-e---~~ir~~f~~Ar~~~p~vlf~DEid~l~ 587 (590)
+ + ..+..+.+.+....|.+|++||+-++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence 1 1 123334455556788999999998765
No 231
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.85 E-value=4e-05 Score=78.52 Aligned_cols=78 Identities=22% Similarity=0.416 Sum_probs=52.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----hccc-----------hhHHHHHHHHHH-HH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----KLAG-----------ESESNLRKAFEE-AE 298 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~----~~~g-----------~~~~~~~~~f~~-a~ 298 (590)
|++++..++|+|+||+|||+||..++... +..+++++...... ...| .....+..++.. .+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46788999999999999999999988764 55677777632111 1011 112233333333 23
Q ss_pred hcCCeEEEEcccccccC
Q 007764 299 KNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 299 ~~~p~iL~iDEid~l~~ 315 (590)
...+.+++||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56788999999999875
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.84 E-value=3.6e-05 Score=72.98 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=32.4
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~e 550 (590)
++.++.-++|+||||+|||||++.+|...+.+.+.+...+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5777778999999999999999999985566666665543
No 233
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.83 E-value=3.3e-05 Score=79.02 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=51.5
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhh----hhccc------------hHHHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT----MWFGE------------SEANVREIFDKAR 571 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~----~~vGe------------se~~ir~~f~~Ar 571 (590)
|+.++.-++++|||||||||||..+|... +...+.+...+... +..|. .++.+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 66777789999999999999999998665 34444444433221 11221 1333333333445
Q ss_pred hCCCeEEEEcccccccc
Q 007764 572 QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 572 ~~~p~vlf~DEid~l~~ 588 (590)
...|.+|++|++.++.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 66799999999998863
No 234
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.82 E-value=4.1e-05 Score=70.08 Aligned_cols=35 Identities=9% Similarity=0.256 Sum_probs=30.4
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~e 550 (590)
.-++|.|||||||||+|++||..++.+|+.+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 45899999999999999999999998888765543
No 235
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.82 E-value=3.4e-05 Score=73.73 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.2
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
++.++..++|+||||||||||++.+|...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56677789999999999999999999654
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.81 E-value=1.8e-05 Score=75.78 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=27.4
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|+|||||++++++...
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567889999999999999999999998754
No 237
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.80 E-value=4.9e-05 Score=75.60 Aligned_cols=112 Identities=19% Similarity=0.303 Sum_probs=63.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhh----hccc-----------hhHHHH-HHHHHH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMS----KLAG-----------ESESNL-RKAFEE 296 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~-----~~~~~~v~~~~l~~----~~~g-----------~~~~~~-~~~f~~ 296 (590)
|+.++ -++|+||||+|||+|+..++... +..++++++.+-.. ...| ...+.+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 46777 79999999999999987775543 56778888754221 1011 111222 222222
Q ss_pred ---HHhcCCeEEEEcccccccCCCCC--Cchh------HHHHHHHHHHHhhhccccCCeEEEEee
Q 007764 297 ---AEKNAPSIIFIDEIDSIAPKREK--THGE------VERRIVSQLLTLMDGLKSRAHVIVIGA 350 (590)
Q Consensus 297 ---a~~~~p~iL~iDEid~l~~~~~~--~~~~------~~~~v~~~Ll~~ld~~~~~~~v~vI~~ 350 (590)
.+...|.+++||-+..+.+..+. ..++ ...|.+.+.+..+..+....++.+|.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 24567999999999999753221 1111 234455555544444444445555543
No 238
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.80 E-value=1.7e-05 Score=81.28 Aligned_cols=79 Identities=20% Similarity=0.364 Sum_probs=52.2
Q ss_pred hhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC----CcEEEEecc-chhh---------hhccchHHHHHHHHHHHh
Q 007764 506 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGP-ELLT---------MWFGESEANVREIFDKAR 571 (590)
Q Consensus 506 ~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~----~~~i~v~~~-el~~---------~~vGese~~ir~~f~~Ar 571 (590)
.+.++-..+++-+++.|||||||||+.+++++... ...+.+.-+ ++.- ..++.......+.+.+|-
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh
Confidence 34444445566699999999999999999998763 344443222 2211 012222234566888888
Q ss_pred hCCCeEEEEcccc
Q 007764 572 QSAPCVLFFDELD 584 (590)
Q Consensus 572 ~~~p~vlf~DEid 584 (590)
...|.+|++||+-
T Consensus 194 ~~~PdvillDEp~ 206 (356)
T 3jvv_A 194 REDPDIILVGEMR 206 (356)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEecCCCC
Confidence 8999999999984
No 239
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.79 E-value=2e-05 Score=81.07 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|.||+|||||||+++|++..
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3456789999999999999999999999875
No 240
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.78 E-value=3.8e-05 Score=78.40 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=29.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~e 550 (590)
..++++||+|+|||+|++.++...+.+++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 47999999999999999999999877777776543
No 241
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.78 E-value=5.5e-05 Score=73.88 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=27.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|+|||||+++|++...
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999999999998753
No 242
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.78 E-value=2.4e-05 Score=79.81 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 35578899999999999999999999998753
No 243
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=1.7e-05 Score=74.48 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=30.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.+.++..++|.|||||||||++++||..++..|+..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 445667799999999999999999999999998754
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.77 E-value=3.4e-05 Score=73.72 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.9
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
++.++.-+.|+||||||||||++.+|...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 66777789999999999999999999854
No 245
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.77 E-value=2.5e-05 Score=80.46 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=27.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|||||||+++|++...
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4567889999999999999999999998753
No 246
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.76 E-value=5e-05 Score=74.32 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|+|||||++++++...
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4467889999999999999999999998753
No 247
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.75 E-value=4.3e-05 Score=74.92 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=27.6
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4568899999999999999999999998764
No 248
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.75 E-value=1.5e-05 Score=83.36 Aligned_cols=119 Identities=18% Similarity=0.122 Sum_probs=66.1
Q ss_pred ceEEEECCCCCcHHHHHHHH-HHHhCCeEEEEech-----hhhhhccch--hHHHHHHHHHHHHhcCCeEEEEccccccc
Q 007764 243 KGILLYGPPGSGKTLIARAV-ANETGAFFFCINGP-----EIMSKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~l-a~~~~~~~~~v~~~-----~l~~~~~g~--~~~~~~~~f~~a~~~~p~iL~iDEid~l~ 314 (590)
-++||.|+||| ||++|+++ ++.++...+ +.+. .+.....+. +.-.-+ .+..|. ..++|+||++.+.
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~~tG~~~~~G-~l~LAd---gGvl~lDEIn~~~ 313 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKEDRGWALRAG-AAVLAD---GGILAVDHLEGAP 313 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEESSSEEEEEC-HHHHTT---TSEEEEECCTTCC
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEcCCCcccCCC-eeEEcC---CCeeehHhhhhCC
Confidence 38999999999 99999999 776554333 3221 111110000 000001 112222 3499999999764
Q ss_pred CCCCCCchhHHHHHHHHHHHhhhcc-------ccCCeEEEEeecCCCC-----------CCchhhhccCCCceEE-EecC
Q 007764 315 PKREKTHGEVERRIVSQLLTLMDGL-------KSRAHVIVIGATNRPN-----------SIDPALRRFGRFDREI-DIGV 375 (590)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~-------~~~~~v~vI~~tn~~~-----------~ld~al~r~gRf~~~i-~i~~ 375 (590)
+ .....|++.|..- .-..++.+|||+|+.. .+++++.. ||+..+ ..+.
T Consensus 314 ~-----------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~ 380 (506)
T 3f8t_A 314 E-----------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVD 380 (506)
T ss_dssp H-----------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-
T ss_pred H-----------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCC
Confidence 2 3345555555421 1233678999999865 67778877 996644 4556
Q ss_pred CCHHH
Q 007764 376 PDEVG 380 (590)
Q Consensus 376 P~~~~ 380 (590)
|+.+.
T Consensus 381 pd~e~ 385 (506)
T 3f8t_A 381 PRPGE 385 (506)
T ss_dssp -----
T ss_pred CChhH
Confidence 66544
No 249
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.74 E-value=8.8e-05 Score=71.77 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.9
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHH
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIA 536 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA 536 (590)
++.++.-++|+||||||||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 66778889999999999999999999
No 250
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.72 E-value=2.2e-05 Score=77.02 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=48.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---eEEEEechhhh---h--------hccchhHHHHHHHHHHHHhcC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGPEIM---S--------KLAGESESNLRKAFEEAEKNA 301 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~---~~~~v~~~~l~---~--------~~~g~~~~~~~~~f~~a~~~~ 301 (590)
++.+.++..++|+||+|+||||+++++++.+.. --+.+.+..+. . ...+.....++..+..+....
T Consensus 19 ~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 19 ELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED 98 (261)
T ss_dssp HGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHC
T ss_pred HHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhC
Confidence 333577889999999999999999999987532 12222222110 0 001111123466677777789
Q ss_pred CeEEEEcccc
Q 007764 302 PSIIFIDEID 311 (590)
Q Consensus 302 p~iL~iDEid 311 (590)
|.++++||.-
T Consensus 99 p~illlDEp~ 108 (261)
T 2eyu_A 99 PDVIFVGEMR 108 (261)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEeCCCC
Confidence 9999999964
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.72 E-value=9.9e-05 Score=67.49 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=31.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
+..|+|+|+|||||||+++.|+..++..++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4579999999999999999999999988877665443
No 252
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.69 E-value=4.3e-05 Score=69.78 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.2
Q ss_pred CCCCCceeEEECCCCCChhHHHHH
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKA 534 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAka 534 (590)
.+.++.-++|.||||||||||+++
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHH
Confidence 344666799999999999999993
No 253
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.68 E-value=1.9e-05 Score=73.96 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=41.7
Q ss_pred eeEEECCCCCChhHHHHHHHHHh--------C-CcEEEEeccchhhhhc----------cch-----HHHHHHHHHHHhh
Q 007764 517 GVLFYGPPGCGKTLLAKAIANEC--------Q-ANFISVKGPELLTMWF----------GES-----EANVREIFDKARQ 572 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~--------~-~~~i~v~~~el~~~~v----------Ges-----e~~ir~~f~~Ar~ 572 (590)
..|++|+||||||++|..++... + .+.+..+.+++.-.++ ... ...+.+.+..+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~- 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE- 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc-
Confidence 57899999999999998875443 3 3443444444432222 111 122233222233
Q ss_pred CCCeEEEEcccccccc
Q 007764 573 SAPCVLFFDELDSIAT 588 (590)
Q Consensus 573 ~~p~vlf~DEid~l~~ 588 (590)
...+||++||++.+.+
T Consensus 86 ~~~~vliIDEAq~l~~ 101 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWP 101 (199)
T ss_dssp GTTCEEEETTGGGTSB
T ss_pred cCceEEEEEChhhhcc
Confidence 3357999999998843
No 254
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.67 E-value=7.4e-05 Score=76.33 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=52.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhh----hcc------------chHHHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----WFG------------ESEANVREIFDKAR 571 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~----~vG------------ese~~ir~~f~~Ar 571 (590)
|+.++.-++++||||||||||+..+|..+ +.+.+.+.+.+.... .+| ..+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56677779999999999999999999875 455666666553221 011 11333333333344
Q ss_pred hCCCeEEEEcccccccc
Q 007764 572 QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 572 ~~~p~vlf~DEid~l~~ 588 (590)
...|.++++|.+-.+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 57889999999988765
No 255
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.67 E-value=5.6e-05 Score=75.67 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=27.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|+||+|+|||||+++|++.+.
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4578899999999999999999999988753
No 256
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.66 E-value=2.3e-05 Score=80.26 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35578899999999999999999999998753
No 257
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.66 E-value=1.8e-05 Score=82.39 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=51.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhC---CcEEEEeccchhhh-----hcc--------chHHHHHHHHHHHhhCCCeEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-----WFG--------ESEANVREIFDKARQSAPCVL 578 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~---~~~i~v~~~el~~~-----~vG--------ese~~ir~~f~~Ar~~~p~vl 578 (590)
...++++|++|||||++|+++...+. .+|+.++++.+-.. .+| ... .-...|+.|... +|
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~g---tl 235 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADGG---TL 235 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTTS---EE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCCc---EE
Confidence 34589999999999999999998874 68999998775321 122 111 123466666554 99
Q ss_pred EEccccccccc
Q 007764 579 FFDELDSIATQ 589 (590)
Q Consensus 579 f~DEid~l~~~ 589 (590)
|||||+.+.+.
T Consensus 236 fldei~~l~~~ 246 (387)
T 1ny5_A 236 FLDEIGELSLE 246 (387)
T ss_dssp EEESGGGCCHH
T ss_pred EEcChhhCCHH
Confidence 99999998753
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.66 E-value=2.2e-05 Score=72.80 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=33.9
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 007764 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (590)
Q Consensus 512 ~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el 551 (590)
+.++.-++|.|||||||||++++||+..+...+.+.+.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4456679999999999999999999987778888887665
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.66 E-value=3.4e-05 Score=74.63 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=27.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+ +.+.|.||+|+|||||++++++...
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345678 8999999999999999999998763
No 260
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.66 E-value=0.00065 Score=74.63 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=91.3
Q ss_pred ccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHH-------hCCeEEEEechh---
Q 007764 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-------TGAFFFCINGPE--- 277 (590)
Q Consensus 208 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~-------~~~~~~~v~~~~--- 277 (590)
..++|.+..+++|.+.+... -...+.++|+||+|+|||+||+.++.. .....+.++...
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 45899999999998887532 023567999999999999999988642 222233333211
Q ss_pred --hhhhc------cc----------hhHHHHHHHHHHHHhc--CCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhh
Q 007764 278 --IMSKL------AG----------ESESNLRKAFEEAEKN--APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (590)
Q Consensus 278 --l~~~~------~g----------~~~~~~~~~f~~a~~~--~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (590)
+.... .+ .....+...+...... .+.+|++|+++.. .++ .
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~~l-~--- 252 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------WVL-K--- 252 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------HHH-H---
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------HHH-H---
Confidence 11100 00 1112222223322222 6889999998731 111 1
Q ss_pred ccccCCeEEEEeecCCCCCCchhhhccCCCceEEEe---cCCCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCHH
Q 007764 338 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI---GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413 (590)
Q Consensus 338 ~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i---~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~ 413 (590)
.+.. +..+|.||+..... .... ...+.+ ...+.++-.+++......-..........+++.+.|+.-+
T Consensus 253 ~l~~--~~~ilvTsR~~~~~-~~~~-----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 323 (591)
T 1z6t_A 253 AFDS--QCQILLTTRDKSVT-DSVM-----GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLV 323 (591)
T ss_dssp TTCS--SCEEEEEESCGGGG-TTCC-----SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHH
T ss_pred HhcC--CCeEEEECCCcHHH-HhcC-----CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHH
Confidence 2222 33445566543211 1110 122333 3678888888888766431111133467888889887543
No 261
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.64 E-value=1.5e-05 Score=74.19 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
..+.|+||||||||||++.||+..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 358899999999999999999876
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.62 E-value=4.7e-05 Score=78.66 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=51.3
Q ss_pred hhhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhC----CcEEEEecc-ch-hh---hhccc-----hHHHHHHHHHHH
Q 007764 505 EKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGP-EL-LT---MWFGE-----SEANVREIFDKA 570 (590)
Q Consensus 505 ~~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~----~~~i~v~~~-el-~~---~~vGe-----se~~ir~~f~~A 570 (590)
+.+.++.+.++..++++|||||||||++++|++... ...+.+..+ ++ +. .|+.+ .....+.....+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHH
Confidence 345566667777799999999999999999998763 233333322 11 00 01211 222345566667
Q ss_pred hhCCCeEEEEccc
Q 007764 571 RQSAPCVLFFDEL 583 (590)
Q Consensus 571 r~~~p~vlf~DEi 583 (590)
-...|.+|++||+
T Consensus 206 L~~~pd~illdE~ 218 (372)
T 2ewv_A 206 LREDPDVIFVGEM 218 (372)
T ss_dssp TTSCCSEEEESCC
T ss_pred hhhCcCEEEECCC
Confidence 6678999999998
No 263
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.62 E-value=6e-05 Score=73.50 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=27.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|+|||||++.+++...
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567899999999999999999999998753
No 264
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.61 E-value=0.00011 Score=71.74 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=32.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el 551 (590)
.+..++|.|||||||||+|+.|+..++..++.+++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 45569999999999999999999999877777777655
No 265
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.60 E-value=0.0001 Score=72.48 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|.||+|+|||||+++|++..
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3557889999999999999999999999875
No 266
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.59 E-value=0.0002 Score=70.83 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
|+.++..++|+||||+|||||+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999998653
No 267
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.59 E-value=0.00012 Score=74.52 Aligned_cols=31 Identities=29% Similarity=0.252 Sum_probs=26.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEEec
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKG 548 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~ 548 (590)
..++++||+|+|||+|++.++...+ ++.+++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 5799999999999999999999876 455544
No 268
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.58 E-value=0.00012 Score=75.76 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.6
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|.||+|||||||+++|++..
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3567889999999999999999999999864
No 269
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.58 E-value=2.3e-05 Score=79.67 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=54.3
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhCC--cEEEEeccchhh-----h---hccchHHHHHHHHHHHhhCCCeEEEE
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-----M---WFGESEANVREIFDKARQSAPCVLFF 580 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--~~i~v~~~el~~-----~---~vGese~~ir~~f~~Ar~~~p~vlf~ 580 (590)
.+.++..+++.||||||||||+++|++.... ..|.+.+...+. . |+.......+....+|-...|.+|++
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEE
Confidence 3456778999999999999999999998743 467777653221 1 22001234567778888888999999
Q ss_pred ccccc
Q 007764 581 DELDS 585 (590)
Q Consensus 581 DEid~ 585 (590)
||.-+
T Consensus 247 dE~~~ 251 (330)
T 2pt7_A 247 GELRS 251 (330)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99864
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.58 E-value=4.7e-05 Score=70.19 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=29.1
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
+..++|.|||||||||+|+.||..++..|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999998765
No 271
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.58 E-value=0.00013 Score=71.99 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35578899999999999999999999998753
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=3.9e-05 Score=71.85 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=29.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v 273 (590)
+.+.++..|+|+|||||||||+++.|++.++..++..
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4456778999999999999999999999999877543
No 273
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.57 E-value=0.00021 Score=69.55 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=25.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGA 268 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~ 268 (590)
++..+++|+||||||||+++++||+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999998654
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.56 E-value=9.7e-05 Score=72.44 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=27.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|||||||+++|++...
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999999999998764
No 275
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.55 E-value=6.2e-05 Score=77.10 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=46.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEech-hhhh---------hccchhHHHHHHHHHHHHhcCCeEE
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGP-EIMS---------KLAGESESNLRKAFEEAEKNAPSII 305 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~----~~~~~v~~~-~l~~---------~~~g~~~~~~~~~f~~a~~~~p~iL 305 (590)
.++..++|.||+||||||+++++++.+. ..++.+..+ ++.. ...+.........+..+....|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 4456899999999999999999988763 333333221 1100 0111111234456777888999999
Q ss_pred EEcccc
Q 007764 306 FIDEID 311 (590)
Q Consensus 306 ~iDEid 311 (590)
++||+-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999974
No 276
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.54 E-value=0.00015 Score=74.47 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=50.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhh----ccc------------hHHHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW----FGE------------SEANVREIFDKAR 571 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~----vGe------------se~~ir~~f~~Ar 571 (590)
|+.++.-++++||||+|||+||..+|..+ +.+.+.+.....+... .|. .++.+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 66777789999999999999999988765 4454444443322111 111 1333333333344
Q ss_pred hCCCeEEEEcccccccc
Q 007764 572 QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 572 ~~~p~vlf~DEid~l~~ 588 (590)
...+.+|++|.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 56789999999998864
No 277
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.54 E-value=0.00012 Score=74.07 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANE 265 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~ 265 (590)
|++++.-++|+||||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5788899999999999999999999875
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.54 E-value=4.9e-05 Score=70.44 Aligned_cols=41 Identities=34% Similarity=0.402 Sum_probs=34.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
.+.++..++|.|||||||||+++.|++..+...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35778899999999999999999999987666777776654
No 279
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.53 E-value=0.00019 Score=69.20 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|+||+|||||||+++|++..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567889999999999999999999999875
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.53 E-value=0.00015 Score=70.44 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.5
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567899999999999999999999988753
No 281
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.53 E-value=0.00023 Score=71.02 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=31.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEe
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCIN 274 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~----~~~~~~v~ 274 (590)
+++.++.-++|.||||+|||||++.++..+ |..+++++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 578899999999999999999999998875 33454444
No 282
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.52 E-value=0.00016 Score=70.86 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|+|||||+++|++...
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34568899999999999999999999998753
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.51 E-value=0.00013 Score=70.60 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=26.9
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.+++.+.|.||+|+|||||++.|++..
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999999999999999999999875
No 284
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.51 E-value=0.00017 Score=70.12 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=28.0
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34567899999999999999999999998764
No 285
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.50 E-value=6.8e-05 Score=68.26 Aligned_cols=30 Identities=23% Similarity=0.640 Sum_probs=26.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~ 545 (590)
..++|.|||||||||+++.||..++..|+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458999999999999999999999876653
No 286
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.49 E-value=0.0012 Score=78.91 Aligned_cols=169 Identities=12% Similarity=0.115 Sum_probs=96.7
Q ss_pred cccccchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHh-------CCeEEEEechh--
Q 007764 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-------GAFFFCINGPE-- 277 (590)
Q Consensus 207 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~-------~~~~~~v~~~~-- 277 (590)
...+.|.++.+++|.+.+...- ...+-+.|+|+.|+|||+||+.++... ...++.++...
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 3458999999999988875321 234678999999999999999887652 22233444322
Q ss_pred ---hh-------hhc---------cchhHHHHHHHHHHHHhcC--CeEEEEcccccccCCCCCCchhHHHHHHHHHHHhh
Q 007764 278 ---IM-------SKL---------AGESESNLRKAFEEAEKNA--PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 336 (590)
Q Consensus 278 ---l~-------~~~---------~g~~~~~~~~~f~~a~~~~--p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~l 336 (590)
+. ... .......+...+....... +.+|++|+++.. .+ +
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~~----~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------WV----L 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------HH----H
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------HH----H
Confidence 10 000 0111223333333333333 789999998742 11 1
Q ss_pred hccccCCeEEEEeecCCCCCCchhhhccCCCceEEEecC-CCHHHHHHHHHHHhcCCCCCCccCHHHHHHhcCCCCH
Q 007764 337 DGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV-PDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 412 (590)
Q Consensus 337 d~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~-P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~ 412 (590)
..+.. ...||.||+.+...... ......+.++. .+.++-.+++................++++.+.|..-
T Consensus 252 ~~~~~--~~~ilvTtR~~~~~~~~----~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 252 KAFDN--QCQILLTTRDKSVTDSV----MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp TTTCS--SCEEEEEESSTTTTTTC----CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHH
T ss_pred HhhcC--CCEEEEEcCCHHHHHhh----cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHH
Confidence 22222 23455566654322111 12235567775 7888888888876643332223346778888887643
No 287
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.48 E-value=0.00072 Score=65.03 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=29.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCING 275 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~ 275 (590)
|+.++..++|+||||+|||+++..++... +...++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67889999999999999999988776542 455666554
No 288
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.48 E-value=0.00017 Score=73.74 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=33.0
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC---------CcEEEEeccc
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPE 550 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~---------~~~i~v~~~e 550 (590)
.++.++.-+.|+||||||||||++.+|.... ...+.+++-+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4677778899999999999999999999872 3446776644
No 289
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.47 E-value=0.00024 Score=72.68 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=51.5
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhh----hhccc-----------hHHHHHHHHHH-Hh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT----MWFGE-----------SEANVREIFDK-AR 571 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~----~~vGe-----------se~~ir~~f~~-Ar 571 (590)
|+.++.-++++||||||||+||..+|..+ +.+.+.+...+.++ ...|. +...+.++.+. ++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57777789999999999999999999765 44566565532221 11121 12233444433 34
Q ss_pred hCCCeEEEEcccccccc
Q 007764 572 QSAPCVLFFDELDSIAT 588 (590)
Q Consensus 572 ~~~p~vlf~DEid~l~~ 588 (590)
...+.+|++|.+-.+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999988764
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.47 E-value=8.2e-05 Score=68.95 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=29.4
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
..+.-++|.|+|||||||+++.||..++..++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3455689999999999999999999999887764
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.45 E-value=0.00019 Score=67.17 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccch
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 551 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el 551 (590)
.++.-+.|.|||||||||++++||..+ +...+.+++-++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456679999999999999999999988 444345666554
No 292
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.45 E-value=0.00025 Score=69.41 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=26.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+. ++.+.|.||+|+|||||+++|++..
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 35578 8999999999999999999999876
No 293
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.43 E-value=7.5e-05 Score=68.99 Aligned_cols=32 Identities=38% Similarity=0.536 Sum_probs=28.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHH-hCCcEEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANE-CQANFISV 546 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~-~~~~~i~v 546 (590)
+..++|+|+|||||||+++.||.. +++.|+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999999 78777764
No 294
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.43 E-value=0.00052 Score=66.79 Aligned_cols=40 Identities=38% Similarity=0.489 Sum_probs=34.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
...+..++|.|+|||||||+++.|+..++..++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3567789999999999999999999999866677777665
No 295
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.42 E-value=9.2e-05 Score=67.66 Aligned_cols=30 Identities=33% Similarity=0.603 Sum_probs=27.4
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.++|.|||||||||+|++||..++.+|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999888753
No 296
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.40 E-value=0.00023 Score=72.15 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=50.5
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---------CCcEEEEeccch-----hhhh---ccc---------------
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPEL-----LTMW---FGE--------------- 558 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---------~~~~i~v~~~el-----~~~~---vGe--------------- 558 (590)
|+.++.-++++||||||||+||..+|..+ +.+.+.+...+. +..+ .|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 66777789999999999999999999875 344444444331 1000 111
Q ss_pred -hH---HHHHHHHHHHhh-CCCeEEEEccccccc
Q 007764 559 -SE---ANVREIFDKARQ-SAPCVLFFDELDSIA 587 (590)
Q Consensus 559 -se---~~ir~~f~~Ar~-~~p~vlf~DEid~l~ 587 (590)
.+ ..+..+....++ ..+.+|++|++..+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 12 123445555555 778999999998774
No 297
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.40 E-value=9e-05 Score=72.15 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=23.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+..+++||||||||||++|++||..+.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 356799999999999999999999753
No 298
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.40 E-value=0.0001 Score=66.83 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.3
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEEe
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISVK 547 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v~ 547 (590)
-++|.|||||||||+++.||..++..|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998886543
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.39 E-value=0.00013 Score=66.86 Aligned_cols=33 Identities=36% Similarity=0.623 Sum_probs=29.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.+..++|.|+|||||||++++||..++..++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345699999999999999999999999888765
No 300
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.39 E-value=0.00017 Score=74.31 Aligned_cols=71 Identities=24% Similarity=0.445 Sum_probs=50.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCc--EEEEeccchhh-----hhccchH-------HHHHHHHHHHhhCCCeEEEEc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT-----MWFGESE-------ANVREIFDKARQSAPCVLFFD 581 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~--~i~v~~~el~~-----~~vGese-------~~ir~~f~~Ar~~~p~vlf~D 581 (590)
..++++|++||||+++|+++...++.. |+.++++.+-. ..+|... +.-...|+.|.+. +||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~g---tlfld 229 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQG---TLFLD 229 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTS---EEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCC---eEEec
Confidence 459999999999999999999988544 99999986421 1112110 0112356667554 89999
Q ss_pred cccccccc
Q 007764 582 ELDSIATQ 589 (590)
Q Consensus 582 Eid~l~~~ 589 (590)
||+.+.+.
T Consensus 230 ei~~l~~~ 237 (368)
T 3dzd_A 230 EVGELDQR 237 (368)
T ss_dssp TGGGSCHH
T ss_pred ChhhCCHH
Confidence 99998753
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.39 E-value=0.00012 Score=68.54 Aligned_cols=37 Identities=30% Similarity=0.582 Sum_probs=29.2
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el 551 (590)
.++.-++|.|||||||||++++|++.++..+ +++-++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 3456699999999999999999999986544 555554
No 302
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.37 E-value=0.00047 Score=73.27 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=31.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 275 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~----~~~~~~v~~ 275 (590)
|+.++.-++|.|+||+|||+|+..++... +.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 78999999999999999999999987753 445666554
No 303
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.37 E-value=0.00035 Score=68.36 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=42.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHH---hCCcEEEEeccchhhh---hccchHHHHH----HHHHHHhhCCCeEEEEcc
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANE---CQANFISVKGPELLTM---WFGESEANVR----EIFDKARQSAPCVLFFDE 582 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~---~~~~~i~v~~~el~~~---~vGese~~ir----~~f~~Ar~~~p~vlf~DE 582 (590)
+.-++|.|+|||||||+|+.|+.. .+..++.+.+.++... |-...+..++ .....+... ..+++|.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~--~~vIiD~ 79 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN--YWVIVDD 79 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT--SEEEECS
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC--CEEEEeC
Confidence 345899999999999999999998 6778876665444322 2222333332 333333333 4677775
No 304
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.37 E-value=0.00027 Score=70.20 Aligned_cols=34 Identities=41% Similarity=0.586 Sum_probs=28.6
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEEec
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 548 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~ 548 (590)
+.-++|.|||||||||+|+.|+..+...++.|++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4568999999999999999999988555666765
No 305
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.36 E-value=0.00014 Score=75.09 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=50.9
Q ss_pred hhhhhhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEech-hhh-h---hccch-----hHHHHHHHHHHH
Q 007764 232 QLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGP-EIM-S---KLAGE-----SESNLRKAFEEA 297 (590)
Q Consensus 232 ~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~~~~----~~~~~v~~~-~l~-~---~~~g~-----~~~~~~~~f~~a 297 (590)
..+.++.+.++..++|+||+|+||||+++++++.+. ..++.+..+ ++. . .+..+ ....+...+..+
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHH
Confidence 345555577888999999999999999999998753 233333321 100 0 00111 112234556666
Q ss_pred HhcCCeEEEEcccc
Q 007764 298 EKNAPSIIFIDEID 311 (590)
Q Consensus 298 ~~~~p~iL~iDEid 311 (590)
....|.+|++||+-
T Consensus 206 L~~~pd~illdE~~ 219 (372)
T 2ewv_A 206 LREDPDVIFVGEMR 219 (372)
T ss_dssp TTSCCSEEEESCCC
T ss_pred hhhCcCEEEECCCC
Confidence 67789999999974
No 306
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.36 E-value=0.00042 Score=70.70 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---------CCcEEEEeccch-----hhh---hccc---------------
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPEL-----LTM---WFGE--------------- 558 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---------~~~~i~v~~~el-----~~~---~vGe--------------- 558 (590)
|+.++.-++++||||||||+||..+|..+ +...+.+...+. +.. .+|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 67777779999999999999999999873 334444443321 111 0111
Q ss_pred -hH---HHHHHHHHHHhh--CCCeEEEEccccccc
Q 007764 559 -SE---ANVREIFDKARQ--SAPCVLFFDELDSIA 587 (590)
Q Consensus 559 -se---~~ir~~f~~Ar~--~~p~vlf~DEid~l~ 587 (590)
.+ ..+..+.+.++. ..+.+|++|++..+.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 11 122334455555 678999999998775
No 307
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.34 E-value=0.00042 Score=65.95 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=44.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh-------hhhhccchh-H----HHHHHHHHHHHh----cC
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE-------IMSKLAGES-E----SNLRKAFEEAEK----NA 301 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~-------l~~~~~g~~-~----~~~~~~f~~a~~----~~ 301 (590)
++.-++++||+|+||||++..++..+ +..++.+++.. +.+. .|-. + .....+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 46678999999999999888777665 44555554221 1111 1100 0 012344555544 35
Q ss_pred CeEEEEcccccc
Q 007764 302 PSIIFIDEIDSI 313 (590)
Q Consensus 302 p~iL~iDEid~l 313 (590)
+.+++|||+.++
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999875
No 308
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.32 E-value=0.00014 Score=71.03 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=28.8
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEEec
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKG 548 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~ 548 (590)
-+++.|||||||||+|+.||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887754
No 309
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.31 E-value=0.00014 Score=65.52 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=26.8
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 509 ~~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
++.+.++.-+.|.||+|||||||+|+|++..
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455667779999999999999999999987
No 310
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.31 E-value=0.0008 Score=66.80 Aligned_cols=39 Identities=36% Similarity=0.550 Sum_probs=32.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
..+..++|.|||||||||+++.|+..++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 456789999999999999999999998655677777554
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.31 E-value=0.00013 Score=67.14 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=28.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v 273 (590)
+..|+|+|||||||||+++.|+..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56899999999999999999999999877643
No 312
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.31 E-value=0.00017 Score=65.74 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=26.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~ 545 (590)
++..++|.|||||||||+++.|+..++..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34568999999999999999999998766554
No 313
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.31 E-value=0.00016 Score=68.64 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=29.2
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 512 ~~~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
+..++-++|.|||||||+|.|+.||..+++..|+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 34456688999999999999999999998777653
No 314
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.30 E-value=0.00014 Score=67.06 Aligned_cols=32 Identities=38% Similarity=0.619 Sum_probs=27.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
+..++|.|+|||||||+++.||..++..++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 34589999999999999999999998777654
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.30 E-value=0.00019 Score=66.44 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=29.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
...+..|+|.|+|||||||+++.|+..++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456789999999999999999999999876654
No 316
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.29 E-value=0.00038 Score=72.32 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=50.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh---------CCcEEEEeccchhh--------hhccch--------------
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFGES-------------- 559 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~---------~~~~i~v~~~el~~--------~~vGes-------------- 559 (590)
|+.++.-++|+||||||||||++.+|-.. +...+.+.+-+.+. +-+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 67788889999999999999999776433 23356666544211 112211
Q ss_pred -----HHHHHHHHHHHhhCCCeEEEEcccccccc
Q 007764 560 -----EANVREIFDKARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 560 -----e~~ir~~f~~Ar~~~p~vlf~DEid~l~~ 588 (590)
...+.++.+.+....|.+|++||+-++.+
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 11233344444556789999999887653
No 317
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.29 E-value=0.00016 Score=66.56 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=27.5
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.++|.|+|||||||+|+.||..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999988764
No 318
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.29 E-value=0.00018 Score=68.37 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.5
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
+..++|.|+|||||||+|+.||..++..++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999887764
No 319
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.28 E-value=0.00018 Score=65.13 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=28.3
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
..++|.|+|||||||+++.||..++.+|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4689999999999999999999999998764
No 320
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.28 E-value=0.00018 Score=65.38 Aligned_cols=35 Identities=31% Similarity=0.610 Sum_probs=28.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
+..++|+||+||||||+++.|++.++..++ ++..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~ 38 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQE 38 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHH
Confidence 457999999999999999999999987544 44443
No 321
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.27 E-value=0.00082 Score=64.62 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=24.7
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
|+.++.-++++||||+|||+|+..+|...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67778889999999999999988877543
No 322
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.27 E-value=0.00017 Score=67.85 Aligned_cols=29 Identities=45% Similarity=0.663 Sum_probs=26.2
Q ss_pred eEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 518 VLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
++|.|||||||+|.|+.||..+++..|+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 68899999999999999999998877664
No 323
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.26 E-value=0.00075 Score=63.04 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=32.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 278 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l 278 (590)
.++..+.|.||+||||||+++.|++.+ |...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 567889999999999999999999988 555557777665
No 324
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.25 E-value=0.00029 Score=65.08 Aligned_cols=32 Identities=22% Similarity=0.063 Sum_probs=23.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCI 273 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v 273 (590)
+.-++++||+|+||||++..++..+ +..++.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4578999999999999986665543 4554444
No 325
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.24 E-value=0.0026 Score=69.25 Aligned_cols=166 Identities=13% Similarity=0.100 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHHHHcccCChhhhhhhCCCCCceEEEECCCCCcHHHHHHHHHH----HhCCe---EEEEechh-----h
Q 007764 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN----ETGAF---FFCINGPE-----I 278 (590)
Q Consensus 211 ~G~~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtla~~la~----~~~~~---~~~v~~~~-----l 278 (590)
.|.++.+++|.+++... +-.....|.|+|+.|+||||||+.+++ ..... .++++.++ .
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999998888431 012346899999999999999999996 33222 23333222 1
Q ss_pred ---hh----hccc-----------h-hHHHHHHHHHHHHhcC-CeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhc
Q 007764 279 ---MS----KLAG-----------E-SESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (590)
Q Consensus 279 ---~~----~~~g-----------~-~~~~~~~~f~~a~~~~-p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (590)
.. .... + ....+...+....... +.+|++|+++.. .++ .+...
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~----------------~~~-~~~~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----------------ETI-RWAQE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH----------------HHH-HHHHH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc----------------hhh-ccccc
Confidence 11 0000 0 1122334444554554 889999998752 111 11111
Q ss_pred cccCCeEEEEeecCCCCCCchhhhccCCCceEEEecCCCHHHHHHHHHHHhcCCCCCCc--cCHHHHHHhcCCCC
Q 007764 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDD--VDLERIAKDTHGYV 411 (590)
Q Consensus 339 ~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il~~~~~~~~~~~~--~~l~~la~~t~g~~ 411 (590)
. +..||.||+... +... .+.....+.++..+.++-.+++..+....+...+ .....+++.+.|..
T Consensus 264 --~--gs~ilvTTR~~~-v~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 --L--RLRCLVTTRDVE-ISNA---ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp --T--TCEEEEEESBGG-GGGG---CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred --C--CCEEEEEcCCHH-HHHH---cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 2 233444665431 1111 1123356889999999999999876432221011 12345556666553
No 326
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.24 E-value=0.00018 Score=66.36 Aligned_cols=33 Identities=36% Similarity=0.531 Sum_probs=27.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH-hCCeEE
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANE-TGAFFF 271 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~-~~~~~~ 271 (590)
...+..|+|+|+|||||||+++.|+.. ++.+++
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 345678999999999999999999998 675554
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.23 E-value=0.00025 Score=66.32 Aligned_cols=31 Identities=39% Similarity=0.524 Sum_probs=27.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.-++|.|+|||||||+|+.||..++..++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3589999999999999999999999888765
No 328
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.23 E-value=0.0005 Score=62.92 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=31.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccch
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 551 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el 551 (590)
++.-+.|.|++||||||+++.|+..+ +.+++.+++-.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34558899999999999999999987 888988876443
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.23 E-value=0.00023 Score=66.02 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
++.-++|.|+|||||||+|+.||..++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345699999999999999999999999887754
No 330
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.22 E-value=0.0002 Score=64.82 Aligned_cols=29 Identities=38% Similarity=0.555 Sum_probs=25.7
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
-++|.|||||||||+|+.| ...+.+++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887764
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.22 E-value=0.00025 Score=66.38 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=27.9
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
+.-++|.|+|||||||+|+.|+..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 34699999999999999999999998777653
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.21 E-value=0.00023 Score=65.85 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.-++|.|+|||||||+|+.||..++..++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4589999999999999999999999887654
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.21 E-value=0.00023 Score=64.61 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=27.2
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.++|.|+|||||||+|+.||..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999887753
No 334
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.21 E-value=0.00074 Score=67.56 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=46.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchh--------hhh-------------ccchHHHHHHHHH
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL--------TMW-------------FGESEANVREIFD 568 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~--------~~~-------------vGese~~ir~~f~ 568 (590)
.++.-++++|||||||||+++.||..+ +.....+. .+.. ..| -|+..+.+.+.+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~-~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA-ADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE-ECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc-cccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 456679999999999999999999876 33333332 2221 111 0111222344566
Q ss_pred HHhhCCCeEEEEccccc
Q 007764 569 KARQSAPCVLFFDELDS 585 (590)
Q Consensus 569 ~Ar~~~p~vlf~DEid~ 585 (590)
+|....|.++++|+.-.
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 67777889999998743
No 335
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.21 E-value=0.00065 Score=77.65 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.8
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANE 265 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~ 265 (590)
+.+.+++.++|.||+|+||||+++.++..
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34567889999999999999999998753
No 336
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.21 E-value=0.00087 Score=65.48 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=32.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH---hCCeEEEEechhhhh
Q 007764 242 PKGILLYGPPGSGKTLIARAVANE---TGAFFFCINGPEIMS 280 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~---~~~~~~~v~~~~l~~ 280 (590)
+..|+|.|+|||||||+++.|+.. .|..++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 457999999999999999999998 677777667665543
No 337
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.20 E-value=0.00063 Score=67.20 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
++.++.-++|+||||||||||++.+|...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55667779999999999999999999654
No 338
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.19 E-value=0.0011 Score=66.28 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=45.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh-------hc-------------cchhHHHHHHHHH
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS-------KL-------------AGESESNLRKAFE 295 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~-------~~-------------~g~~~~~~~~~f~ 295 (590)
..++..++++||+|+||||++..+|..+ +..+..+++..... .+ .++........+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4567889999999999999999999875 44555554422110 00 0111112233455
Q ss_pred HHHhcCCeEEEEcccc
Q 007764 296 EAEKNAPSIIFIDEID 311 (590)
Q Consensus 296 ~a~~~~p~iL~iDEid 311 (590)
.+....+.++++|+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566778899999754
No 339
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.19 E-value=0.00023 Score=67.55 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=28.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
..++|.|+|||||||+|+.||..++..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999999888765
No 340
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.19 E-value=0.00025 Score=65.02 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=28.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
..+..|+|+|+|||||||+++.|+..++..++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 346689999999999999999999999877654
No 341
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.19 E-value=0.00035 Score=75.60 Aligned_cols=30 Identities=37% Similarity=0.409 Sum_probs=26.7
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+.+++.+.|.||+|||||||+++|++..
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999999999875
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.19 E-value=0.00023 Score=68.04 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=28.5
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.+..++|.|||||||||+|+.||..++..++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345699999999999999999999999887754
No 343
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.19 E-value=7.8e-05 Score=75.72 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=51.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhh-----h---ccchhHHHHHHHHHHHHhcCCeEEEEc
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMS-----K---LAGESESNLRKAFEEAEKNAPSIIFID 308 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~~~--~~~~v~~~~l~~-----~---~~g~~~~~~~~~f~~a~~~~p~iL~iD 308 (590)
+.++..++|+||+|+||||+++++++.... ..+.+++..... . +........+..+..+....|.+|++|
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 356789999999999999999999998743 345555532211 1 110023355667777888899999999
Q ss_pred cccc
Q 007764 309 EIDS 312 (590)
Q Consensus 309 Eid~ 312 (590)
|...
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9653
No 344
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.18 E-value=0.0006 Score=74.84 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+++++.+.|+||+|+|||||++.+++.+.
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 35678999999999999999999999988764
No 345
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.18 E-value=0.00018 Score=69.88 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=29.1
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
+..+.|.||+||||||++++||..++..|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 66799999999999999999999999888753
No 346
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.17 E-value=0.00033 Score=65.54 Aligned_cols=37 Identities=41% Similarity=0.655 Sum_probs=29.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
.++..++|.||+||||||+++.|++.+|..+ +++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 4578899999999999999999999997544 455444
No 347
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.17 E-value=0.00065 Score=74.77 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+++++.+.|+||+|+|||||++.+++...
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 45678999999999999999999999998764
No 348
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.16 E-value=0.00042 Score=65.90 Aligned_cols=72 Identities=18% Similarity=0.109 Sum_probs=44.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccc------hhhhhccchH-----HHHHHHHHHHhh----CCCeE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE------LLTMWFGESE-----ANVREIFDKARQ----SAPCV 577 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~e------l~~~~vGese-----~~ir~~f~~Ar~----~~p~v 577 (590)
.-++++||+|+||||++..+|..+ +.+.+.++... -+....|.+- ....++++.+++ ..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 347888999999999988887665 45555554332 1111123210 112356666665 35789
Q ss_pred EEEccccccc
Q 007764 578 LFFDELDSIA 587 (590)
Q Consensus 578 lf~DEid~l~ 587 (590)
|++||+.-+.
T Consensus 93 ViIDEaQ~l~ 102 (223)
T 2b8t_A 93 IGIDEVQFFD 102 (223)
T ss_dssp EEECSGGGSC
T ss_pred EEEecCccCc
Confidence 9999997553
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.16 E-value=0.0003 Score=64.89 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=27.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.-++|.|+|||||||+|+.||..++..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4689999999999999999999999877754
No 350
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.00064 Score=65.49 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=29.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH----hCCeEEEEec
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCING 275 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~----~~~~~~~v~~ 275 (590)
|+.++.-++|+|+||+|||+++..++.. .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5788999999999999999999877543 3555655553
No 351
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.15 E-value=0.00028 Score=63.40 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.++..+.|.||+|+|||||++.+++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4567889999999999999999999999987
No 352
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.14 E-value=0.00033 Score=67.29 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=28.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
..++|.|+|||||||+|+.||..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4599999999999999999999999888765
No 353
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.14 E-value=0.00026 Score=65.31 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhC-----CcEEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQ-----ANFISV 546 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~-----~~~i~v 546 (590)
.-++|.|||||||||+++.||..++ ..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 4589999999999999999999887 777653
No 354
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.14 E-value=0.00052 Score=75.26 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+++++.+.|+||+|+|||||++.+++...
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 45678999999999999999999999988764
No 355
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.14 E-value=0.00034 Score=66.63 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=26.7
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~ 545 (590)
..+.|.|||||||||+++.||..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358999999999999999999999877664
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.14 E-value=0.00023 Score=65.29 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=22.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFI 544 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i 544 (590)
.-++|.|+|||||||+|+.||..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45899999999999999999999999887
No 357
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.13 E-value=0.00028 Score=66.74 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.9
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.++|.|||||||||+|+.||..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998887765
No 358
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.13 E-value=0.00038 Score=63.38 Aligned_cols=36 Identities=33% Similarity=0.478 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
++..++|+||||+||||+++.|++.+|..+ +++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 467899999999999999999999987654 444443
No 359
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.12 E-value=0.0011 Score=65.94 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=49.7
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh-----CCcEEEEeccchhhh----hccc------------hHHHHHHHHHH
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTM----WFGE------------SEANVREIFDK 569 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~-----~~~~i~v~~~el~~~----~vGe------------se~~ir~~f~~ 569 (590)
|+.++ -++++||||||||+|+-.++..+ +...+.+++.+-+.. -.|. .|+..-++.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56666 68999999999999987766554 456666776554321 1121 12220222222
Q ss_pred ---HhhCCCeEEEEcccccccc
Q 007764 570 ---ARQSAPCVLFFDELDSIAT 588 (590)
Q Consensus 570 ---Ar~~~p~vlf~DEid~l~~ 588 (590)
.+...|.+|++|-|-++.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 3667899999999999874
No 360
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.12 E-value=0.0015 Score=69.50 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 007764 244 GILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~ 266 (590)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998776
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.12 E-value=0.00032 Score=63.30 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=27.0
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.++|.|+|||||||+|+.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 378999999999999999999999888753
No 362
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.11 E-value=0.00031 Score=66.44 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=26.5
Q ss_pred eEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 518 VLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
++|.|||||||||+|+.||..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999887755
No 363
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.11 E-value=0.00033 Score=63.90 Aligned_cols=29 Identities=38% Similarity=0.577 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
.|+|.|+|||||||+++.|++.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999977653
No 364
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.11 E-value=0.0024 Score=68.24 Aligned_cols=76 Identities=17% Similarity=0.341 Sum_probs=49.4
Q ss_pred CCe-EEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC--CCchhhhccCCCceEEEecCCC
Q 007764 301 APS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--SIDPALRRFGRFDREIDIGVPD 377 (590)
Q Consensus 301 ~p~-iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~--~ld~al~r~gRf~~~i~i~~P~ 377 (590)
.|. ++++||+..++... ...+.. ++..+-.......+.+|.+|++|. .++..++. .+...|.+...+
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~-~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEE-LIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHH-HHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHH-HHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 354 89999998775421 112222 222222222334677778888886 57777776 788889999999
Q ss_pred HHHHHHHHH
Q 007764 378 EVGRLEVLR 386 (590)
Q Consensus 378 ~~~r~~Il~ 386 (590)
..+...|+.
T Consensus 366 ~~dsr~ilg 374 (512)
T 2ius_A 366 KIDSRTILD 374 (512)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888888875
No 365
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.10 E-value=0.0024 Score=64.21 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=31.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCING 275 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~ 275 (590)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 68899999999999999999999988653 346666654
No 366
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.10 E-value=0.00031 Score=63.54 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=27.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFCIN 274 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~v~ 274 (590)
.|+|.|+|||||||+++.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999997765443
No 367
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.10 E-value=0.00018 Score=66.53 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=38.9
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccchhhhh--------ccch-----HHHHHHHHHHHhhCCCeEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW--------FGES-----EANVREIFDKARQSAPCVLF 579 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el~~~~--------vGes-----e~~ir~~f~~Ar~~~p~vlf 579 (590)
.-.+++||+|+||||++..++..+ +.+.+.++.. .-.+| .|.. -....++++.+. ..+.+||
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~-~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvvi 81 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK-IDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVF 81 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec-cccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEE
Confidence 347899999999999986666443 5554444322 10111 1100 011233444443 2467999
Q ss_pred Ecccccccc
Q 007764 580 FDELDSIAT 588 (590)
Q Consensus 580 ~DEid~l~~ 588 (590)
+||+.-+.+
T Consensus 82 IDE~Q~~~~ 90 (184)
T 2orw_A 82 IDEVQFFNP 90 (184)
T ss_dssp ECCGGGSCT
T ss_pred EECcccCCH
Confidence 999987643
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.10 E-value=0.00034 Score=65.04 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=28.2
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
+.-++|.|+|||||||+|+.||..++..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45699999999999999999999999877754
No 369
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.09 E-value=0.00066 Score=74.47 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+++++.+.|+||+|+|||||++.+++...
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 45678999999999999999999999998764
No 370
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.08 E-value=0.00026 Score=64.67 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=23.9
Q ss_pred ceeEEECCCCCChhHHHHHHHH-HhCCcEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIAN-ECQANFIS 545 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~-~~~~~~i~ 545 (590)
.-++|.|||||||||+|+.|+. ..+..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 3588999999999999999998 45544443
No 371
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.07 E-value=0.00026 Score=76.04 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=50.9
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHHHhC--CcEEEEeccchhh----hhc--------cchHHHHHHHHHHHhhCCCeE
Q 007764 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT----MWF--------GESEANVREIFDKARQSAPCV 577 (590)
Q Consensus 512 ~~~~~gvLL~GppGtGKTtLAkalA~~~~--~~~i~v~~~el~~----~~v--------Gese~~ir~~f~~Ar~~~p~v 577 (590)
+..+..+++.|||||||||++++|++... ...+.+.++.-+. .++ +..+-.+.++.+.+....|.+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 34667799999999999999999999884 3577777764211 011 111224556666666678899
Q ss_pred EEEcccc
Q 007764 578 LFFDELD 584 (590)
Q Consensus 578 lf~DEid 584 (590)
++++|+-
T Consensus 337 iivgEir 343 (511)
T 2oap_1 337 IIVGEVR 343 (511)
T ss_dssp EEESCCC
T ss_pred EEeCCcC
Confidence 9999974
No 372
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.07 E-value=0.0013 Score=72.18 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+++++.+.|+||+|+|||||++.+++..
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999999999999875
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.07 E-value=0.00041 Score=67.09 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=29.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
++..++|.|||||||||+|+.|+..++..++++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 556799999999999999999999998877755
No 374
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.06 E-value=0.0048 Score=64.60 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=48.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----------h----------ccchhHHHHHHHHHHH
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----------K----------LAGESESNLRKAFEEA 297 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~----------~----------~~g~~~~~~~~~f~~a 297 (590)
++..++++|++|+||||++..||..+ +..+..+.+..... . ...+....++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765 55566665432110 0 0112333456667777
Q ss_pred HhcCCeEEEEcccc
Q 007764 298 EKNAPSIIFIDEID 311 (590)
Q Consensus 298 ~~~~p~iL~iDEid 311 (590)
......++++|..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77778899999863
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.06 E-value=0.00055 Score=62.63 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=32.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 278 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l 278 (590)
.++..+.|.|++||||||+++.|+..+ |.+++.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 356789999999999999999999987 888887776544
No 376
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.06 E-value=0.00038 Score=64.00 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=26.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFF 271 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~ 271 (590)
.+..|+|.|+|||||||+++.|++.++..++
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3567999999999999999999999986544
No 377
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.05 E-value=0.00039 Score=67.35 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=27.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~ 545 (590)
+.-++|.|||||||||++++||..++...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4679999999999999999999988876553
No 378
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.00047 Score=64.43 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=27.6
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.-++|.|+|||||||+++.||..++..++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4589999999999999999999999877764
No 379
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.0003 Score=66.87 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=27.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
+..++|.|||||||||+++.||..++..++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34689999999999999999999999876653
No 380
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.05 E-value=0.0015 Score=69.13 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=31.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 275 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~----~~~~~~v~~ 275 (590)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68899999999999999999999887653 445666654
No 381
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.05 E-value=0.00034 Score=65.42 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.7
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
.++.-+.|.||||||||||+++|++..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345668999999999999999999985
No 382
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.02 E-value=0.00035 Score=64.24 Aligned_cols=30 Identities=37% Similarity=0.528 Sum_probs=26.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 243 KGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
..|+|+|+|||||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 359999999999999999999999987654
No 383
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.02 E-value=0.002 Score=59.25 Aligned_cols=38 Identities=29% Similarity=0.304 Sum_probs=28.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhC---CcEEEEeccch
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPEL 551 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~---~~~i~v~~~el 551 (590)
++.-++|.|+|||||||+++.||..++ .++..+++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 445589999999999999999998874 34555555433
No 384
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.02 E-value=0.00046 Score=62.37 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=27.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
-..|+|.|++||||||+++.|+..++.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3589999999999999999999999987764
No 385
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.01 E-value=0.00049 Score=66.98 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=27.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFI 544 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i 544 (590)
++..+.|.||+||||||++|+||..+++.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4456999999999999999999999887765
No 386
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.99 E-value=0.00041 Score=64.92 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.4
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.+.|.|+|||||||+++.||. ++..++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 88777653
No 387
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.98 E-value=0.0009 Score=70.78 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=46.0
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC--CcEEEEeccchhh--------h--------hccc-----hHHHHHHHH
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT--------M--------WFGE-----SEANVREIF 567 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~--~~~i~v~~~el~~--------~--------~vGe-----se~~ir~~f 567 (590)
.+.++.-++|+||||||||||++.||+.+. .--|.+.+.+... . |+.. ....+.+..
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l 368 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 368 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence 344566699999999999999999998763 1234444433321 1 1111 123355555
Q ss_pred HHHhhCCCeEEEEcccccc
Q 007764 568 DKARQSAPCVLFFDELDSI 586 (590)
Q Consensus 568 ~~Ar~~~p~vlf~DEid~l 586 (590)
..++.....++++|=+-.+
T Consensus 369 ~~a~~~~~DvVLIDTaGrl 387 (503)
T 2yhs_A 369 QAAKARNIDVLIADTAGRL 387 (503)
T ss_dssp HHHHHTTCSEEEECCCCSC
T ss_pred HHHHhcCCCEEEEeCCCcc
Confidence 5555555568888865443
No 388
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.98 E-value=0.001 Score=72.65 Aligned_cols=99 Identities=20% Similarity=0.358 Sum_probs=53.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcc----chhHHHHHHHHHHH---------HhcCCeEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLA----GESESNLRKAFEEA---------EKNAPSII 305 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~~~~~----g~~~~~~~~~f~~a---------~~~~p~iL 305 (590)
...++|.||||||||+++.+++..+ +..++.........+.. +.....+..++... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 3589999999999999999998754 44444443221111110 00001111111100 01134799
Q ss_pred EEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 306 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 306 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
++||+..+. ......| +..+.....++++|-.+..
T Consensus 284 IIDEasml~-----------~~~~~~L---l~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 284 IVDEVSMMG-----------DALMLSL---LAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp EECCGGGCC-----------HHHHHHH---HTTSCTTCEEEEEECTTSC
T ss_pred EEcCccCCC-----------HHHHHHH---HHhCcCCCEEEEEeccccc
Confidence 999987652 1223333 3334455678888866654
No 389
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.98 E-value=0.00037 Score=67.62 Aligned_cols=31 Identities=35% Similarity=0.540 Sum_probs=28.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
+..+.|+|++||||||+++.|++.++.+++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 7899999999999999999999999987654
No 390
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.98 E-value=0.00062 Score=64.59 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=27.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
++..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35689999999999999999999999876544
No 391
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.98 E-value=0.00035 Score=65.79 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=29.2
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHhC-----CcEEEEecc
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGP 549 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~~-----~~~i~v~~~ 549 (590)
.++.-+.+.||||||||||+++|++.+. ...+.+++-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 3556689999999999999999999885 345555543
No 392
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.98 E-value=0.00036 Score=65.46 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.6
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFIS 545 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~ 545 (590)
-+.|.|||||||||+++.||+ ++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 7877764
No 393
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.98 E-value=0.00054 Score=70.43 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=53.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHHHhCC--cEEEEeccchhh-----h---hcc-c-------hHHHHHHHHHHH
Q 007764 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-----M---WFG-E-------SEANVREIFDKA 570 (590)
Q Consensus 509 ~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~--~~i~v~~~el~~-----~---~vG-e-------se~~ir~~f~~A 570 (590)
++.+.++..+++.||+|||||||+++|++.... ..|.+.+..-+. . |+- + ....+++....+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSC 248 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHH
Confidence 344567778999999999999999999998743 356666532111 1 221 1 112366777788
Q ss_pred hhCCCeEEEEccccc
Q 007764 571 RQSAPCVLFFDELDS 585 (590)
Q Consensus 571 r~~~p~vlf~DEid~ 585 (590)
....|.++++||+..
T Consensus 249 l~~~pd~~l~~e~r~ 263 (361)
T 2gza_A 249 LRMKPTRILLAELRG 263 (361)
T ss_dssp TTSCCSEEEESCCCS
T ss_pred HhcCCCEEEEcCchH
Confidence 778899999999754
No 394
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.98 E-value=0.00039 Score=66.11 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=23.6
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
.+.++.-+.|.||+|||||||+++|++..
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34455669999999999999999999977
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.97 E-value=0.00045 Score=65.32 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=27.2
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.++|.|||||||||+|+.||..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999888775
No 396
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.97 E-value=0.00046 Score=64.33 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=26.6
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.+.|.|++||||||+++.||..++..++.-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e 31 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKE 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcc
Confidence 378999999999999999999999877643
No 397
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.97 E-value=0.00057 Score=63.26 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=28.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
++..|+|.|+|||||||+++.|+..++.+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 45689999999999999999999999876543
No 398
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.96 E-value=0.00065 Score=63.41 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=27.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
.+..|+|.|+|||||||+++.|+..++.+++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 45579999999999999999999999877544
No 399
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00063 Score=62.83 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=28.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 278 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l 278 (590)
+..|+|.|+|||||||+++.|+..++.+++ +..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHH
Confidence 467999999999999999999999987654 44444
No 400
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.96 E-value=0.0007 Score=64.13 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~~ 280 (590)
...++-|+|.|||||||+|.|+.|++.++... ++..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 35677899999999999999999999998654 55555543
No 401
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.96 E-value=0.00041 Score=65.29 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=26.7
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhC--CcEEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQ--ANFIS 545 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~--~~~i~ 545 (590)
++.-+.|.||+|||||||++.|++.++ ..++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 455689999999999999999999987 54443
No 402
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.96 E-value=0.00043 Score=65.13 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.+.++.-+.|.||||||||||+++|++...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 445666799999999999999999999873
No 403
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.95 E-value=0.0005 Score=66.98 Aligned_cols=32 Identities=41% Similarity=0.514 Sum_probs=28.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFCING 275 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~v~~ 275 (590)
-++|+|||||||||+++.||+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58999999999999999999999987766554
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.94 E-value=0.00054 Score=65.31 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=26.2
Q ss_pred eEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 518 VLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
++|.|||||||||+|+.||..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998877665
No 405
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.94 E-value=0.00064 Score=63.54 Aligned_cols=31 Identities=35% Similarity=0.596 Sum_probs=27.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
+..|+|.|++||||||+++.|++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999866543
No 406
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.94 E-value=0.0004 Score=65.00 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.1
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 512 MSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 512 ~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
+.++.-+.|.|||||||||+++.|+...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456679999999999999999999887
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.94 E-value=0.00064 Score=63.43 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=29.0
Q ss_pred CceeEEECCCCCChhHHHHHHHHHh-CCcEEEEec
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKG 548 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~-~~~~i~v~~ 548 (590)
+.-+.|.|++||||||+++.||..+ +.+++.+.-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4568999999999999999999998 577877653
No 408
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.93 E-value=0.00053 Score=64.04 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+.++..+.|.||+||||||+++.|++..+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45678899999999999999999999864
No 409
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.93 E-value=0.0076 Score=64.87 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=51.2
Q ss_pred eEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCCC--CCchhhhccCCCceEEEecCCCHHH
Q 007764 303 SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--SIDPALRRFGRFDREIDIGVPDEVG 380 (590)
Q Consensus 303 ~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~~--~ld~al~r~gRf~~~i~i~~P~~~~ 380 (590)
.+++|||++.++.... ..+...+..+.. ......+.+|.+|++|. .++..++. .|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar-~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIAQ-KARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHHH-HCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHHH-HHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 5899999998764321 122222323222 23445788888999987 78888877 788899999999888
Q ss_pred HHHHHH
Q 007764 381 RLEVLR 386 (590)
Q Consensus 381 r~~Il~ 386 (590)
...||.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 877774
No 410
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.92 E-value=0.0019 Score=64.79 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=30.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGP 276 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~ 276 (590)
+..++|+||+||||||+++.||+.++..++..+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 35799999999999999999999999777776544
No 411
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.92 E-value=0.0037 Score=60.02 Aligned_cols=33 Identities=33% Similarity=0.276 Sum_probs=27.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q 007764 243 KGILLYGPPGSGKTLIARAVANETGAFFFCING 275 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~~~~~~~v~~ 275 (590)
..++++||+|+|||.++.+++...+...+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 359999999999999999998888766655544
No 412
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.91 E-value=0.00052 Score=68.89 Aligned_cols=34 Identities=35% Similarity=0.566 Sum_probs=30.4
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEEEecc
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~ 549 (590)
..++|.||+||||||||+.||..++..+|.++.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 3589999999999999999999999999988653
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.0012 Score=62.16 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHHHhC----CcEEEEeccch
Q 007764 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPEL 551 (590)
Q Consensus 512 ~~~~~gvLL~GppGtGKTtLAkalA~~~~----~~~i~v~~~el 551 (590)
..++.-++|.|+|||||||+++.|+..++ .+++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34555689999999999999999998764 45777765443
No 414
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.90 E-value=0.00048 Score=64.39 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.3
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
+++.+.|.||||+|||||++.|++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 55679999999999999999999875
No 415
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.90 E-value=0.00035 Score=68.39 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=30.1
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhCCc--EEEEec
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKG 548 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~--~i~v~~ 548 (590)
+.+.++.-+.|.||||||||||.|+|++..... -|.++|
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 67 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG 67 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 345567779999999999999999999887532 455554
No 416
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.90 E-value=0.00023 Score=72.12 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=26.6
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFIS 545 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~ 545 (590)
.++|+|||||||||++++||..++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 49999999999999999999999988854
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.90 E-value=0.0007 Score=64.82 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=26.8
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCCcEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~~~i~ 545 (590)
..+.|.|||||||||+++.||..++..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999877754
No 418
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.90 E-value=0.00049 Score=65.39 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=24.9
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
++.+.+++.+.|+||+|+|||||++.|++..
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3557788999999999999999999999987
No 419
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.90 E-value=0.00072 Score=62.43 Aligned_cols=30 Identities=27% Similarity=0.220 Sum_probs=27.4
Q ss_pred eEEECCCCCChhHHHHHHHHHh---CCcEEEEe
Q 007764 518 VLFYGPPGCGKTLLAKAIANEC---QANFISVK 547 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~---~~~~i~v~ 547 (590)
+.|.|++||||||+++.|+..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999988 88888765
No 420
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.89 E-value=0.0011 Score=75.70 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.1
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHH
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANE 538 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~ 538 (590)
.+.++.-++|.||||+||||+.|.+|..
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 3445566999999999999999999854
No 421
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.89 E-value=0.00053 Score=62.51 Aligned_cols=26 Identities=46% Similarity=0.567 Sum_probs=22.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHH-HhCC
Q 007764 243 KGILLYGPPGSGKTLIARAVAN-ETGA 268 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~-~~~~ 268 (590)
..|+|.|+|||||||+++.|+. .++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 5689999999999999999998 4553
No 422
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.88 E-value=0.00065 Score=62.55 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=24.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+..|+|.|+|||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 423
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.88 E-value=0.00069 Score=64.64 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=27.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
..+..|+|.|+|||||||+++.|+..++..++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 345689999999999999999999999876554
No 424
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.88 E-value=0.00077 Score=60.90 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=25.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFCI 273 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~v 273 (590)
.|+|.|||||||||+++.| ..++..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 6899999999999999999 8888876543
No 425
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.88 E-value=0.00071 Score=61.28 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 243 KGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 243 ~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
..|+|.|+|||||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 368999999999999999999999977653
No 426
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.87 E-value=0.00082 Score=62.24 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=26.8
Q ss_pred eEEECCCCCChhHHHHHHHHHh---CCcEEEEec
Q 007764 518 VLFYGPPGCGKTLLAKAIANEC---QANFISVKG 548 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~---~~~~i~v~~ 548 (590)
+.|.|++||||||+++.|+..+ +.+++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 888886644
No 427
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.86 E-value=0.00062 Score=62.50 Aligned_cols=26 Identities=15% Similarity=0.425 Sum_probs=22.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhC
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
++-+.|.||||||||||+++|+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45589999999999999999998763
No 428
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.86 E-value=0.0005 Score=62.93 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=23.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFF 271 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~ 271 (590)
+..|+|.|+|||||||+++.|+..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 467999999999999999999999998766
No 429
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.86 E-value=0.0006 Score=68.02 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=28.6
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHHHhCCc
Q 007764 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 542 (590)
Q Consensus 509 ~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~~ 542 (590)
.+.+.++..+.|+||||||||||+++|++.....
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 3466777779999999999999999999987433
No 430
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.86 E-value=0.002 Score=73.85 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=22.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHH
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVAN 264 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~ 264 (590)
++..++.++|.||+|+||||+++.++.
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677899999999999999999853
No 431
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.86 E-value=0.00042 Score=63.94 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=27.7
Q ss_pred eeEEECCCCCChhHHHHHHHHHhC---CcEEEEeccchh
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL 552 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~---~~~i~v~~~el~ 552 (590)
-++|.|+|||||||+|+.|+..++ ..+..+.+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 478999999999999999999886 234444544554
No 432
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.86 E-value=0.00041 Score=67.92 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=26.4
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++.-+.|.||||||||||+|+|++...
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3455667799999999999999999998874
No 433
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.85 E-value=0.0007 Score=65.45 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=28.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
.++..|+|.|||||||||+++.|+..++..++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 356789999999999999999999999866553
No 434
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.85 E-value=0.00033 Score=67.45 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=26.4
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++.-+.|.||||||||||.|+|++...
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3456677799999999999999999998763
No 435
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.85 E-value=0.0006 Score=65.95 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=25.3
Q ss_pred CCCCceeEEECCCCCChhHHHHHHHHHhCCc
Q 007764 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQAN 542 (590)
Q Consensus 512 ~~~~~gvLL~GppGtGKTtLAkalA~~~~~~ 542 (590)
+.++.-+.|.||+|||||||++.|++.++..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3445558999999999999999999987643
No 436
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.83 E-value=0.0043 Score=64.85 Aligned_cols=71 Identities=25% Similarity=0.184 Sum_probs=45.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh----------hhcc---------c-hhHHHHHHHHHHH
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM----------SKLA---------G-ESESNLRKAFEEA 297 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~l~----------~~~~---------g-~~~~~~~~~f~~a 297 (590)
++..++++||+|+||||++..||..+ +..+..+.+.... .... + .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999998765 5566555543110 0000 0 1112233445555
Q ss_pred HhcCCeEEEEcccc
Q 007764 298 EKNAPSIIFIDEID 311 (590)
Q Consensus 298 ~~~~p~iL~iDEid 311 (590)
....+.++++|...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 55678899999864
No 437
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.83 E-value=0.001 Score=61.25 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=27.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4679999999999999999999999865543
No 438
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.83 E-value=0.002 Score=70.68 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+++.+.|.||+|+|||||+++|++.+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999999999999875
No 439
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.82 E-value=0.00074 Score=67.37 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=30.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 269 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~ 269 (590)
++.+++++.+.|+||+|+|||||++.|++.+...
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 4678999999999999999999999999988433
No 440
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.82 E-value=0.0019 Score=69.93 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=25.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.+++.+.|.||+|+|||||+++|++..
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999999999999999875
No 441
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.81 E-value=0.0009 Score=62.08 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4679999999999999999999999865543
No 442
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.80 E-value=0.00086 Score=64.85 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=27.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFF 271 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~ 271 (590)
.+..++|.|||||||||+++.|+..++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3678999999999999999999999876543
No 443
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.80 E-value=0.0022 Score=64.71 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHhCC--cEEEEeccchhh-----------h-----hccc-----hHHHHHHHHHH
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-----------M-----WFGE-----SEANVREIFDK 569 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~~~--~~i~v~~~el~~-----------~-----~vGe-----se~~ir~~f~~ 569 (590)
.++.-++|.|||||||||+++.||..+.. --+.+.+.++.. . |+.. ....+.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 35667999999999999999999987721 123444444321 1 1111 12334454455
Q ss_pred HhhCCCeEEEEcccccc
Q 007764 570 ARQSAPCVLFFDELDSI 586 (590)
Q Consensus 570 Ar~~~p~vlf~DEid~l 586 (590)
++.....++++|.....
T Consensus 207 ~~~~~~d~vliDtaG~~ 223 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRS 223 (328)
T ss_dssp HHHHTCSEEEEEECCSC
T ss_pred HHhccchhhHHhhccch
Confidence 55445567888876543
No 444
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.80 E-value=0.0011 Score=63.51 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=27.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
.+..|+|.|+|||||||+++.|+..++..++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34679999999999999999999999976544
No 445
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.80 E-value=0.00031 Score=67.09 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=25.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.+.++.-+.|.||||||||||.|+|++...
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455667799999999999999999998764
No 446
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.79 E-value=0.00066 Score=63.45 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 239 VKPPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 239 i~~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
+.++..+.|+||+||||||+++.|++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678899999999999999999999987
No 447
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.79 E-value=0.00084 Score=61.93 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=25.9
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEEeccch
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v~~~el 551 (590)
-++|.|||||||||+++.|+...+. .+.+.+-++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244555444
No 448
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.79 E-value=0.0023 Score=66.81 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=42.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC---eEEEEech-hhhh------hccchhHHHHHHHHHHHHhcCCeEEEEccc
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGP-EIMS------KLAGESESNLRKAFEEAEKNAPSIIFIDEI 310 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~---~~~~v~~~-~l~~------~~~g~~~~~~~~~f~~a~~~~p~iL~iDEi 310 (590)
++..++|.||+|+||||+++++++.+.. .++.+.-+ +..- .......-.....+..+..+.|.++++.|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 4567999999999999999999998753 23333211 1100 000011111233444555678999999985
Q ss_pred c
Q 007764 311 D 311 (590)
Q Consensus 311 d 311 (590)
.
T Consensus 246 R 246 (418)
T 1p9r_A 246 R 246 (418)
T ss_dssp C
T ss_pred C
Confidence 4
No 449
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.78 E-value=0.00086 Score=63.54 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=27.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~~v 273 (590)
+..|+|.|+|||||||+++.|+..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45799999999999999999999998766543
No 450
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.78 E-value=0.00046 Score=66.96 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.4
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++.-+.|.||||||||||+|+|++...
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455677799999999999999999998874
No 451
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.78 E-value=0.0004 Score=66.90 Aligned_cols=30 Identities=33% Similarity=0.532 Sum_probs=26.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
+.+.++.-+.|.||||||||||+|+|++..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345677779999999999999999999876
No 452
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.78 E-value=0.00053 Score=67.47 Aligned_cols=31 Identities=35% Similarity=0.568 Sum_probs=26.6
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++.-+.|.||||||||||+|+|++...
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456677799999999999999999998874
No 453
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.77 E-value=0.00048 Score=68.08 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.3
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++.-+.|.||||||||||.|+|++...
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3455677799999999999999999998774
No 454
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.77 E-value=0.013 Score=59.25 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=35.5
Q ss_pred cCChhhhhhh-CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 007764 228 LRHPQLFKSI-GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCING 275 (590)
Q Consensus 228 ~~~~~~~~~l-~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~ 275 (590)
...+.+-.-+ |+.++.-++|.|+||+|||+|+..+|... +.++.+++.
T Consensus 31 TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 31 TGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3344443333 68999999999999999999999987763 566666554
No 455
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.76 E-value=0.0013 Score=66.43 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.9
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHH
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANE 538 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~ 538 (590)
|+.++.-++++||||||||+||..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5667777999999999999999999976
No 456
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.76 E-value=0.00078 Score=63.29 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467889999999999999999999999875
No 457
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.76 E-value=0.0043 Score=67.08 Aligned_cols=78 Identities=24% Similarity=0.297 Sum_probs=53.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh----hhhh---------------cc---------chh
Q 007764 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE----IMSK---------------LA---------GES 286 (590)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v~~~~----l~~~---------------~~---------g~~ 286 (590)
++.++..++|.||||+|||||++.++... |...+++...+ +... .. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 67889999999999999999999998764 33444443321 1100 00 013
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccC
Q 007764 287 ESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (590)
Q Consensus 287 ~~~~~~~f~~a~~~~p~iL~iDEid~l~~ 315 (590)
.+..+.++..+....|.+|++|=+..+..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHh
Confidence 45667777788888999999996655543
No 458
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.76 E-value=0.0018 Score=71.27 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
++.+++++.+.|+||+|+|||||++.+++...
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 45678999999999999999999999998753
No 459
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.75 E-value=0.0012 Score=61.67 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
.+..|+|.|++||||||+++.|+..++..++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35679999999999999999999999875544
No 460
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.75 E-value=0.00043 Score=65.04 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=24.8
Q ss_pred CceeEEECCCCCChhHHHHHHHHHhCCcE
Q 007764 515 SKGVLFYGPPGCGKTLLAKAIANECQANF 543 (590)
Q Consensus 515 ~~gvLL~GppGtGKTtLAkalA~~~~~~~ 543 (590)
+.-+.|.|+|||||||+++.||..++..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999875543
No 461
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.75 E-value=0.0013 Score=62.59 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 007764 242 PKGILLYGPPGSGKTLIARAVANETGAFFF 271 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~~~~~~ 271 (590)
+..|.|.||+||||||+++.|++.++.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999986654
No 462
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.75 E-value=0.0013 Score=61.85 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=25.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
.++..+.|.||+|+|||||++.|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999875
No 463
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.75 E-value=0.00041 Score=65.35 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=24.1
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCC
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQA 541 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~ 541 (590)
.+.-++|.|++||||||+++.||..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556999999999999999999988643
No 464
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.75 E-value=0.00082 Score=63.84 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETGAFFF 271 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~~~~~ 271 (590)
.+..|+|.|||||||||+++.|+..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3567999999999999999999999986543
No 465
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.0013 Score=61.68 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=26.1
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhCC--cEEEE
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQA--NFISV 546 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~~--~~i~v 546 (590)
.-++|.|+|||||||+|+.||..++. +++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 45899999999999999999998876 35544
No 466
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.74 E-value=0.00075 Score=62.27 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.0
Q ss_pred ceeEEECCCCCChhHHHHHHHHHhC
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+-+.|.||||||||||+++|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 467
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.74 E-value=0.0064 Score=56.19 Aligned_cols=103 Identities=14% Similarity=0.208 Sum_probs=58.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEE---ech------hhhhhcc-----------------chhHHHHHH
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCI---NGP------EIMSKLA-----------------GESESNLRK 292 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~~~~~v---~~~------~l~~~~~-----------------g~~~~~~~~ 292 (590)
...|++|+++|.||||+|-.+|-.. |..+..+ .+. .+..... .+.......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3479999999999999999887663 6666666 321 2333321 001233455
Q ss_pred HHHHHHh----cCCeEEEEcccccccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCCC
Q 007764 293 AFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (590)
Q Consensus 293 ~f~~a~~----~~p~iL~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~~ 354 (590)
.++.+.. ...++|++||+.....-+-.+. ..+++++..... ..-+|.|.|.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~--------~ev~~~l~~Rp~--~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL--------EEVISALNARPG--HQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH--------HHHHHHHHTSCT--TCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH--------HHHHHHHHhCcC--CCEEEEECCCC
Confidence 5555544 4478999999975433222121 335555554333 33444466654
No 468
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.74 E-value=0.001 Score=62.81 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=26.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFCI 273 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~v 273 (590)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998765543
No 469
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.73 E-value=0.0004 Score=65.76 Aligned_cols=30 Identities=37% Similarity=0.483 Sum_probs=25.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.+.++.-+.|.||||||||||.|+|++...
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455667799999999999999999998764
No 470
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.00098 Score=61.13 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANETG 267 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~~ 267 (590)
+++.+.|+||+|+|||||++.|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999999764
No 471
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.73 E-value=0.0038 Score=65.32 Aligned_cols=74 Identities=15% Similarity=0.054 Sum_probs=49.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh---CCcEEEEeccch-------------------hhhhcc-chHHHHHHHHHHH
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL-------------------LTMWFG-ESEANVREIFDKA 570 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v~~~el-------------------~~~~vG-ese~~ir~~f~~A 570 (590)
++.-++++||||+||||++..||..+ +.....+.+.-+ +..+.+ .....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999766 444544443211 111111 2334567888888
Q ss_pred hhCCCeEEEEccccccc
Q 007764 571 RQSAPCVLFFDELDSIA 587 (590)
Q Consensus 571 r~~~p~vlf~DEid~l~ 587 (590)
+...+.++++|..-.++
T Consensus 179 ~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp HHTTCSEEEEECCCCSS
T ss_pred HhCCCCEEEEECCCccc
Confidence 88778899999875543
No 472
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.73 E-value=0.0011 Score=62.57 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
.|+|.|||||||||+++.|+..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 48899999999999999999999876554
No 473
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.73 E-value=0.0052 Score=61.16 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=28.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 007764 240 KPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 275 (590)
Q Consensus 240 ~~~~~vLL~GppGtGKTtla~~la~~~----~~~~~~v~~ 275 (590)
.++..++|+||+|+||||++..||..+ |..+..+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 357789999999999999999998765 445555554
No 474
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.72 E-value=0.0011 Score=62.25 Aligned_cols=34 Identities=35% Similarity=0.650 Sum_probs=28.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~v~~~~l~ 279 (590)
.|+|.||||+||+|.|+.|++.++.+. ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 478999999999999999999998764 4545554
No 475
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.72 E-value=0.0012 Score=59.41 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 007764 244 GILLYGPPGSGKTLIARAVANETGAFFFC 272 (590)
Q Consensus 244 ~vLL~GppGtGKTtla~~la~~~~~~~~~ 272 (590)
.|+|.|++||||||+++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999999977653
No 476
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.72 E-value=0.001 Score=62.14 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=27.1
Q ss_pred eeEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 517 GVLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 517 gvLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
.+.|.|++||||||+++.||..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999888753
No 477
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.72 E-value=0.0029 Score=58.47 Aligned_cols=68 Identities=26% Similarity=0.339 Sum_probs=47.2
Q ss_pred ceeEEECCCCCChhHHHHHHHHHh---CCcEEEE---ecc------chhhhhcc------------c------hHHHHHH
Q 007764 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISV---KGP------ELLTMWFG------------E------SEANVRE 565 (590)
Q Consensus 516 ~gvLL~GppGtGKTtLAkalA~~~---~~~~i~v---~~~------el~~~~vG------------e------se~~ir~ 565 (590)
+.+++|++||.||||+|-.+|-.+ |....-+ +|. +++... + . .+...+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 459999999999999999998666 5555444 552 344443 2 1 1345667
Q ss_pred HHHHHhh----CCCeEEEEcccc
Q 007764 566 IFDKARQ----SAPCVLFFDELD 584 (590)
Q Consensus 566 ~f~~Ar~----~~p~vlf~DEid 584 (590)
.++.|++ ....+|++||+-
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~ 130 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELT 130 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCC
Confidence 7777765 457899999983
No 478
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.72 E-value=0.0011 Score=61.68 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.5
Q ss_pred eEEECCCCCChhHHHHHHHHHhCCcEEEE
Q 007764 518 VLFYGPPGCGKTLLAKAIANECQANFISV 546 (590)
Q Consensus 518 vLL~GppGtGKTtLAkalA~~~~~~~i~v 546 (590)
+.|.|++||||||+++.||..++.++|..
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 88999999999999999999989888763
No 479
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.71 E-value=0.00056 Score=67.13 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=0.0
Q ss_pred hcCCCCCceeEEECCCCCChhHHHHHHHH
Q 007764 509 KFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537 (590)
Q Consensus 509 ~~~~~~~~gvLL~GppGtGKTtLAkalA~ 537 (590)
++.+.++.-+.|.||||||||||+|+|++
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhC
No 480
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0024 Score=69.96 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Q 007764 241 PPKGILLYGPPGSGKTLIARAVANET 266 (590)
Q Consensus 241 ~~~~vLL~GppGtGKTtla~~la~~~ 266 (590)
.++.+.|.||+|+|||||+++|++..
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCC
Confidence 33669999999999999999999875
No 481
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.71 E-value=0.00056 Score=66.00 Aligned_cols=30 Identities=30% Similarity=0.569 Sum_probs=26.1
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.+ .-+.|.||||||||||.|+|++...
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35567 7899999999999999999998874
No 482
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.71 E-value=0.00043 Score=68.17 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=26.3
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++.-+.|.||||||||||+|+|++...
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3455667799999999999999999998763
No 483
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.69 E-value=0.00044 Score=66.75 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.+.++.-+.|.||||||||||.|+|++...
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455667799999999999999999998763
No 484
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.69 E-value=0.00045 Score=67.41 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=25.4
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.+.++.-+.|.||||||||||.|+|++...
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344666799999999999999999998763
No 485
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.69 E-value=0.0016 Score=68.11 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=26.9
Q ss_pred hhhhcCCCCCceeEEECCCCCChhHHHHHHHHHhCC
Q 007764 506 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA 541 (590)
Q Consensus 506 ~~~~~~~~~~~gvLL~GppGtGKTtLAkalA~~~~~ 541 (590)
.+.++-..+++-+++.|||||||||+.+++++....
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 344442234445899999999999999999998853
No 486
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.68 E-value=0.0026 Score=63.27 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=41.8
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh----CCcEEEEeccc-------hhhhh---------ccchHHHHHHHHHHHhhC
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPE-------LLTMW---------FGESEANVREIFDKARQS 573 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~----~~~~i~v~~~e-------l~~~~---------vGese~~ir~~f~~Ar~~ 573 (590)
++.-++|+||||+||||+++.||..+ |.....+...- .+..| ...+...++..+.++ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 45679999999999999999999766 33444333211 11111 112233455555554 4
Q ss_pred CCeEEEEccc
Q 007764 574 APCVLFFDEL 583 (590)
Q Consensus 574 ~p~vlf~DEi 583 (590)
.|.++++|-.
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 5689999954
No 487
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.68 E-value=0.00078 Score=63.19 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHh-CCcEEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANEC-QANFIS 545 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~-~~~~i~ 545 (590)
++.-+.+.|||||||||+++.|+..+ +..++.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 44558899999999999999999987 555544
No 488
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.68 E-value=0.00087 Score=63.06 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=0.0
Q ss_pred CCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 513 SPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 513 ~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
.++.-+.|.||||+||||+++.|+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
No 489
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.68 E-value=0.00054 Score=66.55 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=25.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHH
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANE 538 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~ 538 (590)
+.+.++.-+.|.||||||||||.|+|++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556777999999999999999999996
No 490
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.68 E-value=0.0017 Score=77.86 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=29.2
Q ss_pred hhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 007764 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA 268 (590)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtla~~la~~~~~ 268 (590)
++.+++++.+.|+||+|||||||+++|.+.+..
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 456789999999999999999999999987643
No 491
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.67 E-value=0.0014 Score=63.00 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=27.9
Q ss_pred CCceeEEECCCCCChhHHHHHHHHHhCCcEEE
Q 007764 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (590)
Q Consensus 514 ~~~gvLL~GppGtGKTtLAkalA~~~~~~~i~ 545 (590)
++..+.|.|++||||||+++.||..++..++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34568999999999999999999999887765
No 492
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.67 E-value=0.00048 Score=66.87 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=25.8
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
.+.++..+.|.||||||||||.|+|++...
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455677799999999999999999998763
No 493
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.67 E-value=0.001 Score=64.26 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=27.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe
Q 007764 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF 269 (590)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtla~~la~~~~~~ 269 (590)
+.+.++..+.|.||+||||||+++.|++.+|..
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 456778889999999999999999999988743
No 494
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.67 E-value=0.00051 Score=66.45 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=26.0
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
+.+.++..+.|.||||||||||.|+|++..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345667779999999999999999999876
No 495
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.67 E-value=0.00054 Score=66.76 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.4
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++.-+.|.||||||||||.|+|++...
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455677799999999999999999998764
No 496
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.67 E-value=0.013 Score=59.37 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=84.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CC-e--EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccc
Q 007764 242 PKGILLYGPPGSGKTLIARAVANET---GA-F--FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEID 311 (590)
Q Consensus 242 ~~~vLL~GppGtGKTtla~~la~~~---~~-~--~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~iL~iDEid 311 (590)
...+||+||+|.||++.++.+++.+ +. . .+.+++. ..++.+++.+ .-....+++|||++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 4589999999999999999998765 21 2 2222210 1223333333 23456799999998
Q ss_pred c-ccCCCCCCchhHHHHHHHHHHHhhhccccCCeEEEEeecCC-----CCCCchhhhccCCCceEEEecCCCHHHHHHHH
Q 007764 312 S-IAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-----PNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 385 (590)
Q Consensus 312 ~-l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~~tn~-----~~~ld~al~r~gRf~~~i~i~~P~~~~r~~Il 385 (590)
. +.. ...+.|+..++.... ..++++.+++. ...+-+++.+ |. ..+.+..++..+....+
T Consensus 87 ~kl~~-----------~~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 87 NGPNA-----------AINEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp SCCCT-----------THHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHH
T ss_pred CCCCh-----------HHHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHH
Confidence 7 521 123556666665433 34444444431 1234556655 54 67889888888888777
Q ss_pred HHHhcCCCCC-CccCHHHHHHhcCC
Q 007764 386 RIHTKNMKLS-DDVDLERIAKDTHG 409 (590)
Q Consensus 386 ~~~~~~~~~~-~~~~l~~la~~t~g 409 (590)
+..++..... ++..+..++..+.|
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhch
Confidence 7665544322 22335566666655
No 497
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.66 E-value=0.00049 Score=65.92 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=26.5
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++.-+.|.||||||||||.|+|++...
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3455677799999999999999999998864
No 498
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.66 E-value=0.00057 Score=69.72 Aligned_cols=31 Identities=32% Similarity=0.627 Sum_probs=26.2
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHhC
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~~ 540 (590)
+.+.++.-+.|.||||||||||.|+||+...
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3455666799999999999999999998764
No 499
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.66 E-value=0.00054 Score=65.57 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=18.6
Q ss_pred CCCCCceeEEECCCCCChhHHHHHHH-HHh
Q 007764 511 GMSPSKGVLFYGPPGCGKTLLAKAIA-NEC 539 (590)
Q Consensus 511 ~~~~~~gvLL~GppGtGKTtLAkalA-~~~ 539 (590)
.+.++.-+.|.||||||||||++.|+ +..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44556669999999999999999999 765
No 500
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.65 E-value=0.00047 Score=67.65 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=25.9
Q ss_pred cCCCCCceeEEECCCCCChhHHHHHHHHHh
Q 007764 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (590)
Q Consensus 510 ~~~~~~~gvLL~GppGtGKTtLAkalA~~~ 539 (590)
+.+.++.-+.|.||||||||||+|+|++..
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345567779999999999999999999876
Done!