BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007765
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 203/461 (44%), Positives = 280/461 (60%), Gaps = 7/461 (1%)
Query: 113 LDSVVKIFTVSSSPNYGLPWQNKSQRETTGSGFVIPGKKILTNAHVVADSTFVLVRKHGS 172
L++VVK++ ++P+Y LPWQ + Q +TGS F+I K+LTNAH V T V V++ G
Sbjct: 47 LNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIGDGKLLTNAHCVEHDTQVKVKRRGD 106
Query: 173 PTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELGDIPFLQQAVAVVGYPQGGDNISV 232
KY A+V G +CD+A+L VES++FW+G L LG +P LQ +V VVGYP GGD ISV
Sbjct: 107 DRKYVAKVLVRGVDCDIALLSVESEDFWKGAEPLRLGHLPRLQDSVTVVGYPLGGDTISV 166
Query: 233 TKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAIMGN-KVAGVAFQNLSG--AEN 289
TKGVVSR+E T Y HG++ L+ IQIDAAINPGNSGGPA + GVAFQ EN
Sbjct: 167 TKGVVSRIEVTSYAHGSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETEN 226
Query: 290 IGYIIPVPVIKHFITGVVEHGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKIN 349
IGY+IP V+ HF+T +GKY G+ LG+ Q EN LR + + GVLV ++
Sbjct: 227 IGYVIPTTVVSHFLTDYERNGKYTGYPCLGVLLQKLENPALRECLKVPTN-EGVLVRRVE 285
Query: 350 PLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDG 409
P SDA ++LK+ D+I++FD + + +GTV FR+ ERI F +L+S K + + + ++R G
Sbjct: 286 PTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAG 345
Query: 410 KEHEFSITLRLLQPLVPVHQFDKLPSYYIFAGLVFIPLTQPYLHEYGEDWYNTSPRRLCE 469
+ + + LR LVP H PSY I AGLVF PL++P + E ED T +L
Sbjct: 346 EHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECED---TIGLKLLT 402
Query: 470 RALRELPKKAGEQLVILSQVLMDDINAGYERFADLQVKKVNGVEIENLKHLCQLVENCSS 529
+A + + GEQ+VILSQVL +++N GYE + QV K NG+ I N+ HL L++ C
Sbjct: 403 KARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCKD 462
Query: 530 EXXXXXXXXXXXXXXXXXXAKIATSKILKRHRIPSAMSGDL 570
+ + A+ ILK + IPS S DL
Sbjct: 463 KYLVFEFEDNYVAVLEREASNSASLCILKDYGIPSERSADL 503
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 16/192 (8%)
Query: 130 LPWQNKSQRETTGSGFVI-PGKKILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECD 188
LP + Q + GSGF+ P ILTN HVV + + V +KY A+ E D
Sbjct: 46 LPPGFERQVASLGSGFIFDPEGYILTNYHVVGGADNITVTMLDG-SKYDAEYIGGDEELD 104
Query: 189 LAILIVESDEFWEGMHFLELGD---IPFLQQAVAVVGYPQGGDNISVTKGVVS---RVEP 242
+A++ +++ + + +LE GD + + A+A+ G P G + +VT GVVS R P
Sbjct: 105 IAVIKIKASD--KKFPYLEFGDSDKVKIGEWAIAI-GNPLGFQH-TVTVGVVSATNRRIP 160
Query: 243 TQYVHGATQLMAIQIDAAINPGNSGGPAI-MGNKVAGV--AFQNLSGAENIGYIIPVPVI 299
G + IQ DAAINPGNSGGP + + +V G+ A N A N+G+ IP+ +
Sbjct: 161 KPDGSG-YYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTV 219
Query: 300 KHFITGVVEHGK 311
K F+ ++ K
Sbjct: 220 KKFLDTILTQKK 231
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 138/293 (47%), Gaps = 26/293 (8%)
Query: 130 LPWQNKSQRETTGSGFVIPGKK-ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECD 188
LP+ + +GSGF++ I+TNAHVV + V V T Y A+++ V + D
Sbjct: 36 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 94
Query: 189 LAILIVESDEFWEGMHFLELGDIPFLQ--QAVAVVGYPQGGDNISVTKGVVSRVEPTQYV 246
+A++ ++ + L LG L+ + V +G P N +VT G+VS +
Sbjct: 95 IALIKID---HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 150
Query: 247 HGA--TQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLSGAENIGYIIPVPVIKHFI 303
G + + IQ DA IN GNSGGP + + +V G+ L I + IP IK F+
Sbjct: 151 LGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGI--NTLKVTAGISFAIPSDKIKKFL 208
Query: 304 T---------GVVEHGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDA 354
T + KY+G + L+ + ++ R+ ++G + ++ P + A
Sbjct: 209 TESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHR-DFPDVISGAYIIEVIPDTPA 267
Query: 355 HE-ILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVL 406
LK++D+I++ +G + + V+ + T + +V ++ NE ++ V+
Sbjct: 268 EAGGLKENDVIISINGQSVVSANDVSDVIKRESTLNMVV--RRGNEDIMITVI 318
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 124/254 (48%), Gaps = 26/254 (10%)
Query: 126 PNYGLPWQNKSQRETTGSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAV 183
P +P + + + E+ GSG +I I+TN HV+ +++ + V + +A++
Sbjct: 64 PQSRMPEKGR-KFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDG-RRLKARLIGG 121
Query: 184 GHECDLAILIVESDEFWEGMHFLELGDIPFLQQA--VAVVGYPQG----GDNISVTKGVV 237
E DLA+L +++ + + L +GD L+ V +G P G G++ S T G+V
Sbjct: 122 DSETDLAVLKIDA----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIV 177
Query: 238 SRVEPTQY-VHGATQLMAIQIDAAINPGNSGGPAIMG-NKVAGVAFQNLS---GAENIGY 292
S ++ + + G IQ DAAINPGNSGG + ++ G+ LS G IG+
Sbjct: 178 SALKRSDLNIEGVENF--IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGF 235
Query: 293 IIPVPVIKHFITGVVEHGK-YVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPL 351
IP+ ++K +++ G + G + + T E L G + G LV+++NP
Sbjct: 236 AIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPE---LAQAMGYPEDFQGALVSQVNPN 292
Query: 352 SDAHEI-LKKDDII 364
S A LK DII
Sbjct: 293 SPAELAGLKAGDII 306
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 124/254 (48%), Gaps = 26/254 (10%)
Query: 126 PNYGLPWQNKSQRETTGSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAV 183
P +P + + + E+ GSG +I I+TN HV+ +++ + V + +A++
Sbjct: 64 PQSRMPEKGR-KFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDG-RRLKARLIGG 121
Query: 184 GHECDLAILIVESDEFWEGMHFLELGDIPFLQQA--VAVVGYPQG----GDNISVTKGVV 237
E DLA+L +++ + + L +GD L+ V +G P G G++ S T G+V
Sbjct: 122 DSETDLAVLKIDA----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIV 177
Query: 238 SRVEPTQY-VHGATQLMAIQIDAAINPGNSGGPAIMG-NKVAGVAFQNLS---GAENIGY 292
S ++ + + G IQ DAAINPGNSGG + ++ G+ LS G IG+
Sbjct: 178 SALKRSDLNIEGVENF--IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGF 235
Query: 293 IIPVPVIKHFITGVVEHGK-YVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPL 351
IP+ ++K +++ G + G + + T E L G + G LV+++NP
Sbjct: 236 AIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPE---LAQAMGYPEDFQGALVSQVNPN 292
Query: 352 SDAHEI-LKKDDII 364
S A LK DII
Sbjct: 293 SPAELAGLKAGDII 306
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 138/293 (47%), Gaps = 26/293 (8%)
Query: 130 LPWQNKSQRETTGSGFVIPGKK-ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECD 188
LP+ + +GSGF++ I+TNAHVV + V V T Y A+++ V + D
Sbjct: 36 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 94
Query: 189 LAILIVESDEFWEGMHFLELGDIPFLQ--QAVAVVGYPQGGDNISVTKGVVSRVEPTQYV 246
+A++ ++ + L LG L+ + V +G P N +VT G+VS +
Sbjct: 95 IALIKID---HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 150
Query: 247 HGA--TQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLSGAENIGYIIPVPVIKHFI 303
G + + IQ DA IN GN+GGP + + +V G+ L I + IP IK F+
Sbjct: 151 LGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGI--NTLKVTAGISFAIPSDKIKKFL 208
Query: 304 T---------GVVEHGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDA 354
T + KY+G + L+ + ++ R+ ++G + ++ P + A
Sbjct: 209 TESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHR-DFPDVISGAYIIEVIPDTPA 267
Query: 355 HE-ILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVL 406
LK++D+I++ +G + + V+ + T + +V ++ NE ++ V+
Sbjct: 268 EAGGLKENDVIISINGQSVVSANDVSDVIKRESTLNMVV--RRGNEDIMITVI 318
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 25/241 (10%)
Query: 139 ETTGSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVES 196
E+ GSG +I I+TN HV+ +++ + V + +A++ E DLA+L +++
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDG-RRLKARLIGGDSETDLAVLKIDA 134
Query: 197 DEFWEGMHFLELGDIPFLQQA--VAVVGYPQG----GDNISVTKGVVSRVEPTQY-VHGA 249
+ + L +GD L+ V +G P G G++ S T G+VS ++ + + G
Sbjct: 135 ----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEGV 190
Query: 250 TQLMAIQIDAAINPGNSGGPAIMG-NKVAGVAFQNLS---GAENIGYIIPVPVIKHFITG 305
IQ DAAINPGN+GG + ++ G+ LS G IG+ IP+ ++K
Sbjct: 191 ENF--IQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQ 248
Query: 306 VVEHGK-YVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI-LKKDDI 363
+++ G + G + + T E L G + G LV+++NP S A LK DI
Sbjct: 249 IIKFGSIHRGLMGIFVQHLTPE---LAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDI 305
Query: 364 I 364
I
Sbjct: 306 I 306
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 45/302 (14%)
Query: 139 ETTGSGFVIPGKK-ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESD 197
+ +GSGFV + I+TN HV+ ++ + V T + A+V + D+A+L +++
Sbjct: 52 QGSGSGFVWDKQGHIVTNYHVIRGASDLRV-TLADQTTFDAKVVGFDQDKDVAVLRIDAP 110
Query: 198 EFWEGMHFLELG---DIPFLQQAVAVVGYPQGGDNISVTKGVVS--RVEPTQYVHGATQL 252
+ + + +G D+ + Q V +G P G D+ ++T GV+S R E + G
Sbjct: 111 K--NKLRPIPVGVSADL-LVGQKVFAIGNPFGLDH-TLTTGVISGLRREISSAATGRPIQ 166
Query: 253 MAIQIDAAINPGNSGGPAI-MGNKVAGV--AFQNLSGAEN-IGYIIPVPVIKHFITGVVE 308
IQ DAAINPGNSGGP + + G+ A + SGA + +G+ IPV + + +V
Sbjct: 167 DVIQTDAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVR 226
Query: 309 HGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI----LKKD--- 361
GK V LG+ ++V+ + V+GVLV P A + K+D
Sbjct: 227 FGK-VTRPILGIKFAPDQSVE-------QLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYG 278
Query: 362 -----DIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSI 416
DII + +G ++N G+ +R ++ K ++ V VLR + + S+
Sbjct: 279 RLVLGDIITSVNGTKVSN-GSDLYR---------ILDQCKVGDEVTVEVLRGDHKEKISV 328
Query: 417 TL 418
TL
Sbjct: 329 TL 330
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 26/254 (10%)
Query: 126 PNYGLPWQNKSQRETTGSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAV 183
P +P + + + E+ GSG +I I+TN HV+ +++ + V + +A++
Sbjct: 64 PQSRMPEKGR-KFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDG-RRLKARLIGG 121
Query: 184 GHECDLAILIVESDEFWEGMHFLELGDIPFLQQA--VAVVGYPQG----GDNISVTKGVV 237
E DLA+L +++ + + L +GD L+ V +G P G G++ S T G+V
Sbjct: 122 DSETDLAVLKIDA----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIV 177
Query: 238 SRVEPTQY-VHGATQLMAIQIDAAINPGNSGGPAIMG-NKVAGVAFQNLS---GAENIGY 292
S ++ + + G IQ DAAI GNSGG + ++ G+ LS G IG+
Sbjct: 178 SALKRSDLNIEGVENF--IQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGF 235
Query: 293 IIPVPVIKHFITGVVEHGK-YVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPL 351
IP+ ++K +++ G + G + + T E L G + G LV+++NP
Sbjct: 236 AIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPE---LAQAMGYPEDFQGALVSQVNPN 292
Query: 352 SDAHEI-LKKDDII 364
S A LK DII
Sbjct: 293 SPAELAGLKAGDII 306
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 45/315 (14%)
Query: 142 GSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEF 199
GSG +I K ++TN HVV ++T + V+ K+ A++ D+A++ +++ +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDG-RKFDAKMVGKDPRSDIALIQIQNPKN 146
Query: 200 WEGMHFLELGDIPFLQQAVAVVGYPQG-GDNISVTKGVVSRVEPTQYVHGATQLMA---- 254
+ + + VA+ G P G G+ +VT G+VS + G + L A
Sbjct: 147 LTAIKMADSDALRVGDYTVAI-GNPFGLGE--TVTSGIVSAL-------GRSGLNAENYE 196
Query: 255 --IQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHFITGVVE 308
IQ DAAIN GNSGG + + ++ G+ L+ G IG+ IP ++K+ + +VE
Sbjct: 197 NFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVE 256
Query: 309 HGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAF 367
+G+ V LG+ T N +L + ++ G V+++ P S A + +K D+I +
Sbjct: 257 YGQ-VKRGELGI-MGTELNSELAKAMKVDAQ-RGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 368 DGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRLLQPLVPV 427
+G PI++ A R + V K + +LRDGK + ++ L L Q
Sbjct: 314 NGKPISS--FAALRAQ--------VGTMPVGSKLTLGLLRDGK--QVNVNLELQQ----- 356
Query: 428 HQFDKLPSYYIFAGL 442
+++ S IF G+
Sbjct: 357 SSQNQVDSSSIFNGI 371
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 45/315 (14%)
Query: 142 GSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEF 199
GSG +I K ++TN HVV ++T + V+ K+ A++ D+A++ +++ +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDG-RKFDAKMVGKDPRSDIALIQIQNPKN 146
Query: 200 WEGMHFLELGDIPFLQQAVAVVGYPQG-GDNISVTKGVVSRVEPTQYVHGATQLMA---- 254
+ + + VA+ G P G G+ +VT G+VS + G + L A
Sbjct: 147 LTAIKMADSDALRVGDYTVAI-GNPFGLGE--TVTSGIVSAL-------GRSGLNAENYE 196
Query: 255 --IQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHFITGVVE 308
IQ DAAIN GNSGG + + ++ G+ L+ G IG+ IP ++K+ + +VE
Sbjct: 197 NFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVE 256
Query: 309 HGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAF 367
+G+ V LG+ T N +L + ++ G V+++ P S A + +K D+I +
Sbjct: 257 YGQ-VKRGELGI-MGTELNSELAKAMKVDAQ-RGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 368 DGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRLLQPLVPV 427
+G PI++ A R + V K + +LRDGK + ++ L L Q
Sbjct: 314 NGKPISS--FAALRAQ--------VGTMPVGSKLTLGLLRDGK--QVNVNLELQQ----- 356
Query: 428 HQFDKLPSYYIFAGL 442
+++ S IF G+
Sbjct: 357 SSQNQVDSSSIFNGI 371
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 151/315 (47%), Gaps = 45/315 (14%)
Query: 142 GSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEF 199
GSG +I K ++TN HVV ++T + V+ K+ A++ D+A++ +++ +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDG-RKFDAKMVGKDPRSDIALIQIQNPKN 146
Query: 200 WEGMHFLELGDIPFLQQAVAVVGYPQG-GDNISVTKGVVSRVEPTQYVHGATQLMA---- 254
+ + + VA+ G P G G+ +VT G+VS + G + L A
Sbjct: 147 LTAIKMADSDALRVGDYTVAI-GNPFGLGE--TVTSGIVSAL-------GRSGLNAENYE 196
Query: 255 --IQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHFITGVVE 308
IQ DAAIN GN+GG + + ++ G+ L+ G IG+ IP ++K+ + +VE
Sbjct: 197 NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVE 256
Query: 309 HGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAF 367
+G+ V LG+ T N +L + ++ G V+++ P S A + +K D+I +
Sbjct: 257 YGQ-VKRGELGI-MGTELNSELAKAMKVDAQ-RGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 368 DGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRLLQPLVPV 427
+G PI++ A R + V K + +LRDGK + ++ L L Q
Sbjct: 314 NGKPISS--FAALRAQ--------VGTMPVGSKLTLGLLRDGK--QVNVNLELQQ----- 356
Query: 428 HQFDKLPSYYIFAGL 442
+++ S IF G+
Sbjct: 357 SSQNQVDSSSIFNGI 371
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 130 LPWQNKSQRETTGSGFVIPGKK-ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECD 188
LP+ + +GSGF++ I+TNAHVV + V V T Y A+++ V + D
Sbjct: 36 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 94
Query: 189 LAILIVESDEFWEGMHFLELGDIPFLQ--QAVAVVGYPQGGDNISVTKGVVSRVEPTQYV 246
+A++ ++ + L LG L+ + V +G P N +VT G+VS +
Sbjct: 95 IALIKID---HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 150
Query: 247 HGA--TQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLSGAENIGYIIPVPVIKHFI 303
G + + IQ DA IN GNSGGP + + +V G+ L I + IP IK F+
Sbjct: 151 LGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGI--NTLKVTAGISFAIPSDKIKKFL 208
Query: 304 T 304
T
Sbjct: 209 T 209
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 151/315 (47%), Gaps = 45/315 (14%)
Query: 142 GSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEF 199
GSG +I K ++TN HVV ++T + V+ K+ A++ D+A++ +++ +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDG-RKFDAKMVGKDPRSDIALIQIQNPKN 146
Query: 200 WEGMHFLELGDIPFLQQAVAVVGYPQG-GDNISVTKGVVSRVEPTQYVHGATQLMA---- 254
+ + + VA+ G P G G+ +VT G+VS + G + L A
Sbjct: 147 LTAIKMADSDALRVGDYTVAI-GNPFGLGE--TVTSGIVSAL-------GRSGLNAENYE 196
Query: 255 --IQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHFITGVVE 308
IQ DAAIN GN+GG + + ++ G+ L+ G IG+ IP ++K+ + +VE
Sbjct: 197 NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVE 256
Query: 309 HGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAF 367
+G+ V LG+ T N +L + ++ G V+++ P S A + +K D+I +
Sbjct: 257 YGQ-VKRGELGI-MGTELNSELAKAMKVDAQ-RGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 368 DGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRLLQPLVPV 427
+G PI++ A R + V K + +LRDGK + ++ L L Q
Sbjct: 314 NGKPISS--FAALRAQ--------VGTMPVGSKLTLGLLRDGK--QVNVNLELQQ----- 356
Query: 428 HQFDKLPSYYIFAGL 442
+++ S IF G+
Sbjct: 357 SSQNQVDSSSIFNGI 371
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 142/292 (48%), Gaps = 38/292 (13%)
Query: 142 GSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEF 199
GSG +I K ++TN HVV ++T + V+ K+ A++ D+A++ +++ +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDG-RKFDAKMVGKDPRSDIALIQIQNPKN 146
Query: 200 WEGMHFLELGDIPFLQQAVAVVGYPQG-GDNISVTKGVVSRVEPTQYVHGATQLMA---- 254
+ + + VA+ G P G G+ +VT G+VS + G + L A
Sbjct: 147 LTAIKMADSDALRVGDYTVAI-GNPFGLGE--TVTSGIVSAL-------GRSGLNAENYE 196
Query: 255 --IQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHFITGVVE 308
IQ DAAIN GN+GG + + ++ G+ L+ G IG+ IP ++K+ + +VE
Sbjct: 197 NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVE 256
Query: 309 HGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAF 367
+G+ V LG+ T N +L + ++ G V+++ P S A + +K D+I +
Sbjct: 257 YGQ-VKRGELGI-MGTELNSELAKAMKVDAQ-RGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 368 DGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLR 419
+G PI++ A R + V K + +LRDGK+ ++ L+
Sbjct: 314 NGKPISS--FAALRAQ--------VGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 120/254 (47%), Gaps = 25/254 (9%)
Query: 131 PWQNKSQRETTGSGFVIPGKK-ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDL 189
P+ + + GSGFV+ I+TNAHVVAD V VR T Y A V AV D+
Sbjct: 38 PFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDT-YEAVVTAVDPVADI 96
Query: 190 AILIVESDEFWEGMHFLELGDIPFLQQA--VAVVGYPQGGDNISVTKGVVSRVEPTQYVH 247
A L +++ E + L LG ++Q V +G P N ++T G+VS +
Sbjct: 97 ATLRIQTKE---PLPTLPLGRSADVRQGEFVVAMGSPFALQN-TITSGIVSSAQRPARDL 152
Query: 248 G--ATQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLSGAENIGYIIPVPVIKHFI- 303
G T + IQ DAAI+ GN+GGP + + +V GV ++ I + IP ++ F+
Sbjct: 153 GLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVTAG--ISFAIPSDRLREFLH 210
Query: 304 --------TGVV-EHGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDA 354
+G+ +Y+G L LS +QLR GVL++K+ S A
Sbjct: 211 RGEKKNSSSGISGSQRRYIGVMMLTLSPSILAELQLREP-SFPDVQHGVLIHKVILGSPA 269
Query: 355 HEI-LKKDDIILAF 367
H L+ D+ILA
Sbjct: 270 HRAGLRPGDVILAI 283
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 130 LPWQNKSQRETTGSGFVIPGKK-ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECD 188
LP+ + +GSGF++ I+TNAHVV + V V T Y A+++ V + D
Sbjct: 53 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 111
Query: 189 LAILIVESDEFWEGMHFLELGDIPFLQ--QAVAVVGYPQGGDNISVTKGVVSRVEPTQYV 246
+A++ ++ + L LG L+ + V +G P N +VT G+VS +
Sbjct: 112 IALIKID---HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 167
Query: 247 HGA--TQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLSGAENIGYIIPVPVIKHFI 303
G + + IQ DA IN GNSGGP + + +V G+ L I + IP IK F+
Sbjct: 168 LGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGI--NTLKVTAGISFAIPSDKIKKFL 225
Query: 304 T 304
T
Sbjct: 226 T 226
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 130 LPWQNKSQRETTGSGFVIPGKK-ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECD 188
LP+ + +GSGF++ I+TNAHVV + V V T Y A+++ V + D
Sbjct: 53 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 111
Query: 189 LAILIVESDEFWEGMHFLELGDIPFLQ--QAVAVVGYPQGGDNISVTKGVVSRVEPTQYV 246
+A++ ++ + L LG L+ + V +G P N +VT G+VS +
Sbjct: 112 IALIKID---HQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 167
Query: 247 HGA--TQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLSGAENIGYIIPVPVIKHFI 303
G + + IQ DA IN GN+GGP + + +V G+ L I + IP IK F+
Sbjct: 168 LGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGI--NTLKVTAGISFAIPSDKIKKFL 225
Query: 304 T 304
T
Sbjct: 226 T 226
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 148/315 (46%), Gaps = 45/315 (14%)
Query: 142 GSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEF 199
GSG +I K ++TN HVV ++T + V+ K+ A+ D+A++ +++ +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDG-RKFDAKXVGKDPRSDIALIQIQNPKN 146
Query: 200 WEGMHFLELGDIPFLQQAVAVVGYPQG-GDNISVTKGVVSRVEPTQYVHGATQLMA---- 254
+ + + VA+ G P G G+ +VT G+VS + G + L A
Sbjct: 147 LTAIKXADSDALRVGDYTVAI-GNPFGLGE--TVTSGIVSAL-------GRSGLNAENYE 196
Query: 255 --IQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHFITGVVE 308
IQ DAAIN GNSGG + + ++ G+ L+ G IG+ IP +K+ + VE
Sbjct: 197 NFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVE 256
Query: 309 HGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAF 367
+G+ V LG+ T N +L + ++ G V+++ P S A + +K D+I +
Sbjct: 257 YGQ-VKRGELGIXG-TELNSELAKAXKVDAQ-RGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 368 DGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRLLQPLVPV 427
+G PI++ A R + V K + +LRDGK + ++ L L Q
Sbjct: 314 NGKPISS--FAALRAQ--------VGTXPVGSKLTLGLLRDGK--QVNVNLELQQ----- 356
Query: 428 HQFDKLPSYYIFAGL 442
+++ S IF G+
Sbjct: 357 SSQNQVDSSSIFNGI 371
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 148/328 (45%), Gaps = 44/328 (13%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 14 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 67
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+LI+++ G+ + + +P + V +G
Sbjct: 68 IIVALQDGRV-FEALLVGSDSLTDLAVLIIKA---TGGLPTIPINARRVPHIGDVVLAIG 123
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GNSGG + MG
Sbjct: 124 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELMGI 179
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV-GFCSLGLSCQTTENVQLRN 332
N ++ + E IG+ IP + + ++ G+ + G+ +G E L
Sbjct: 180 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIG----GREIAPLHA 235
Query: 333 NFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAFDGVPIANDGTVAFRNRERITFDHL 391
G ++ G++VN+++P A ++ +D+I++ D P A E T D +
Sbjct: 236 QGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKP-------AISALE--TMDQV 286
Query: 392 VSMKKPNEKSLVRVLRDGKEHEFSITLR 419
+ +P V V+RD K+ +T++
Sbjct: 287 AEI-RPGSVIPVVVMRDDKQLTLQVTIQ 313
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 148/315 (46%), Gaps = 45/315 (14%)
Query: 142 GSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEF 199
GSG +I K ++TN HVV ++T + V+ K+ A+ D+A++ +++ +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDG-RKFDAKXVGKDPRSDIALIQIQNPKN 146
Query: 200 WEGMHFLELGDIPFLQQAVAVVGYPQG-GDNISVTKGVVSRVEPTQYVHGATQLMA---- 254
+ + + VA+ G P G G+ +VT G+VS + G + L A
Sbjct: 147 LTAIKXADSDALRVGDYTVAI-GNPFGLGE--TVTSGIVSAL-------GRSGLNAENYE 196
Query: 255 --IQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHFITGVVE 308
IQ DAAIN GN+GG + + ++ G+ L+ G IG+ IP +K+ + VE
Sbjct: 197 NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVE 256
Query: 309 HGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAF 367
+G+ V LG+ T N +L + ++ G V+++ P S A + +K D+I +
Sbjct: 257 YGQ-VKRGELGIXG-TELNSELAKAXKVDAQ-RGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 368 DGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRLLQPLVPV 427
+G PI++ A R + V K + +LRDGK + ++ L L Q
Sbjct: 314 NGKPISS--FAALRAQ--------VGTXPVGSKLTLGLLRDGK--QVNVNLELQQ----- 356
Query: 428 HQFDKLPSYYIFAGL 442
+++ S IF G+
Sbjct: 357 SSQNQVDSSSIFNGI 371
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 148/315 (46%), Gaps = 45/315 (14%)
Query: 142 GSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEF 199
GSG +I K ++TN HVV ++T + V+ K+ A+ D+A++ +++ +
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDG-RKFDAKXVGKDPRSDIALIQIQNPKN 146
Query: 200 WEGMHFLELGDIPFLQQAVAVVGYPQG-GDNISVTKGVVSRVEPTQYVHGATQLMA---- 254
+ + + VA+ G P G G+ +VT G+VS + G + L A
Sbjct: 147 LTAIKXADSDALRVGDYTVAI-GNPFGLGE--TVTSGIVSAL-------GRSGLNAENYE 196
Query: 255 --IQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHFITGVVE 308
IQ DAAIN GN+GG + + ++ G+ L+ G IG+ IP +K+ + VE
Sbjct: 197 NFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVE 256
Query: 309 HGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAF 367
+G+ V LG+ T N +L + ++ G V+++ P S A + +K D+I +
Sbjct: 257 YGQ-VKRGELGIXG-TELNSELAKAXKVDAQ-RGAFVSQVLPNSSAAKAGIKAGDVITSL 313
Query: 368 DGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRLLQPLVPV 427
+G PI++ A R + V K + +LRDGK + ++ L L Q
Sbjct: 314 NGKPISS--FAALRAQ--------VGTXPVGSKLTLGLLRDGK--QVNVNLELQQ----- 356
Query: 428 HQFDKLPSYYIFAGL 442
+++ S IF G+
Sbjct: 357 SSQNQVDSSSIFNGI 371
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 145/328 (44%), Gaps = 44/328 (13%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 35 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 88
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 89 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 144
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+INPGN GG + MG
Sbjct: 145 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINPGNXGGALVNSLGELMGI 200
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV-GFCSLGLSCQTTENVQLRN 332
N ++ + E IG+ IP + + ++ G+ + G+ +G E L
Sbjct: 201 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIG----GREIAPLHA 256
Query: 333 NFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAFDGVPIANDGTVAFRNRERITFDHL 391
G ++ G++VN+++P A ++ +D+I++ D P A E +
Sbjct: 257 QGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKP-------AISALETMA---Q 306
Query: 392 VSMKKPNEKSLVRVLRDGKEHEFSITLR 419
V+ +P V V+RD K+ +T++
Sbjct: 307 VAEIRPGSVIPVVVMRDDKQLTLQVTIQ 334
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 146/328 (44%), Gaps = 44/328 (13%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 9 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 62
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 63 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 118
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GNSGG + MG
Sbjct: 119 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELMGI 174
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV-GFCSLGLSCQTTENVQLRN 332
N ++ + E IG+ IP + + ++ G+ + G+ +G E L
Sbjct: 175 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIG----GREIAPLHA 230
Query: 333 NFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAFDGVPIANDGTVAFRNRERITFDHL 391
G ++ G++VN+++P A ++ +D+I++ D P A E T D +
Sbjct: 231 QGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKP-------AISALE--TMDQV 281
Query: 392 VSMKKPNEKSLVRVLRDGKEHEFSITLR 419
+ +P V V+RD K+ +T++
Sbjct: 282 AEI-RPGSVIPVVVMRDDKQLTLQVTIQ 308
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 26/297 (8%)
Query: 130 LPWQNKSQRETTGSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHEC 187
LP Q E GSG +I K +LTN HV+ + + ++ + ++ A++ +
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDG-REFDAKLIGSDDQS 111
Query: 188 DLAILIVESDEFWEGMHFLELGDIPFLQQAVAVVGYPQGGDNISVTKGVVSRVEPTQY-V 246
D+A+L +++ + + + AVAV G P G + T G+VS + + +
Sbjct: 112 DIALLQIQNPSKLTQIAIADSDKLRVGDFAVAV-GNPFGLGQ-TATSGIVSALGRSGLNL 169
Query: 247 HGATQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHF 302
G IQ DA+IN GNSGG + + ++ G+ L+ G+ IG+ IP + +
Sbjct: 170 EGLENF--IQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTL 227
Query: 303 ITGVVEHGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLS-DAHEILKKD 361
+++ G+ + LG+ T + + F + + G V+++ P S A +K
Sbjct: 228 AQQLIDFGE-IKRGLLGIKG-TEMSADIAKAFNLDVQ-RGAFVSEVLPGSGSAKAGVKAG 284
Query: 362 DIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITL 418
DII + +G P+ + R+R ++ +P K + +LR+GK E +TL
Sbjct: 285 DIITSLNGKPL--NSFAELRSR--------IATTEPGTKVKLGLLRNGKPLEVEVTL 331
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 138/297 (46%), Gaps = 26/297 (8%)
Query: 130 LPWQNKSQRETTGSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHEC 187
LP Q E GSG +I K +LTN HV+ + + ++ + ++ A++ +
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDG-REFDAKLIGSDDQS 111
Query: 188 DLAILIVESDEFWEGMHFLELGDIPFLQQAVAVVGYPQGGDNISVTKGVVSRVEPTQY-V 246
D+A+L +++ + + + AVAV G P G + T G+VS + + +
Sbjct: 112 DIALLQIQNPSKLTQIAIADSDKLRVGDFAVAV-GNPFGLGQ-TATSGIVSALGRSGLNL 169
Query: 247 HGATQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVPVIKHF 302
G IQ DA+IN GN+GG + + ++ G+ L+ G+ IG+ IP + +
Sbjct: 170 EGLENF--IQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTL 227
Query: 303 ITGVVEHGKYVGFCSLGLSCQTTENVQLRNNFGMRSEVTGVLVNKINPLS-DAHEILKKD 361
+++ G+ + LG+ T + + F + + G V+++ P S A +K
Sbjct: 228 AQQLIDFGE-IKRGLLGIKG-TEMSADIAKAFNLDVQ-RGAFVSEVLPGSGSAKAGVKAG 284
Query: 362 DIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITL 418
DII + +G P+ + R+R ++ +P K + +LR+GK E +TL
Sbjct: 285 DIITSLNGKPL--NSFAELRSR--------IATTEPGTKVKLGLLRNGKPLEVEVTL 331
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 95/209 (45%), Gaps = 38/209 (18%)
Query: 142 GSGFVIPGKK-ILTNAHVVADSTFVLVRKHGSPTK---------YRAQVEAVGHE--CDL 189
GSG ++ + ILTN HV+A + GSP A VG + D+
Sbjct: 33 GSGIILSAEGLILTNNHVIAAAAK---PPLGSPPPKTTVTFSDGRTAPFTVVGADPTSDI 89
Query: 190 AILIVESDEFWEGMHFLELGDIPFLQ--QAVAVVGYPQGGDNISVTKGVVSRV-EPTQYV 246
A++ V+ G+ + LG L+ Q V +G P G + +VT G+VS + P
Sbjct: 90 AVVRVQG---VSGLTPISLGSSSDLRVGQPVLAIGSPLGLEG-TVTTGIVSALNRPVSTT 145
Query: 247 HGA----TQLMAIQIDAAINPGNSGGPAIMGN-KVAGV--AFQNL--------SGAENIG 291
A T L AIQ DAAINPGNSGG + N ++ GV A L SG+ +G
Sbjct: 146 GEAGNQNTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIGLG 205
Query: 292 YIIPVPVIKHFITGVVEHGKYVGFCSLGL 320
+ IPV K ++ GK SLG+
Sbjct: 206 FAIPVDQAKRIADELISTGKA-SHASLGV 233
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 143/328 (43%), Gaps = 44/328 (13%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG + + I+TN HV+ D+
Sbjct: 9 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIXDQRGYIITNKHVINDADQ 62
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 63 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 118
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAIMG-NKVAGV 279
P N+ ++T+G++S Q +Q DA+IN GNSGG + ++ G+
Sbjct: 119 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELXGI 174
Query: 280 AFQNLSGA------ENIGYIIPVPVIKHFITGVVEHGKYV-GFCSLGLSCQTTENVQLRN 332
+ + E IG+ IP + ++ G+ + G+ +G E L
Sbjct: 175 NTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGRVIRGYIGIG----GREIAPLHA 230
Query: 333 NFGMRSEVTGVLVNKINPLSDAHEI-LKKDDIILAFDGVPIANDGTVAFRNRERITFDHL 391
G ++ G++VN+++P A ++ +D+I++ D P A E T D +
Sbjct: 231 QGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKP-------AISALE--TXDQV 281
Query: 392 VSMKKPNEKSLVRVLRDGKEHEFSITLR 419
+ +P V V RD K+ +T++
Sbjct: 282 AEI-RPGSVIPVVVXRDDKQLTLQVTIQ 308
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 35 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 88
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 89 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 144
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+INPGNSGG + MG
Sbjct: 145 NPA---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINPGNSGGALVNSLGELMGI 200
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
N ++ + E IG+ IP + + ++ G+ +
Sbjct: 201 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 24/218 (11%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 35 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 88
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 89 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 144
Query: 223 YPQGGDNISVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG-NK 275
P + +T+G++S Q +Q DA+INPGNSGG + MG N
Sbjct: 145 NPYNLGQV-ITQGIISATGRIGLNPTGRQNF-LQTDASINPGNSGGALVNSLGELMGINT 202
Query: 276 VAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
++ + E IG+ IP + + ++ G+ +
Sbjct: 203 LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 35 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 88
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 89 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 144
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+INPGNSGG + MG
Sbjct: 145 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINPGNSGGALVNSLGELMGI 200
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
N ++ + E IG+ IP + + ++ G+ +
Sbjct: 201 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 135 KSQRETTGSGFVIPGKKILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIV 194
+ Q+ G+GFVI +++TNAHVVA S V V P + A V + D+AIL V
Sbjct: 53 RCQKVLEGTGFVISPDRVMTNAHVVAGSNNVTVYAGDKP--FEATVVSYDPSVDVAILAV 110
Query: 195 ESDEFWEGMHFLELGDIPFLQQA-VAVVGYPQGGDNISVTKGVVSRVEPT-QYVHGATQL 252
+ E P A V V+GYP GG+ + + + + ++G +
Sbjct: 111 PHLPPPPLVFAAE----PAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEP 166
Query: 253 MA---IQIDAAINPGNSGGPAI-MGNKVAGVAFQNLSGAENIGYII 294
+ I A + G+SGGP I + +V GV F G+++
Sbjct: 167 VTRDVYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAIDDAETGFVL 212
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 135 KSQRETTGSGFVIPGKKILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIV 194
+ Q+ G+GFVI +++TNAHVVA S V V P + A V + D+AIL V
Sbjct: 35 RCQKVLEGTGFVISPDRVMTNAHVVAGSNNVTVYAGDKP--FEATVVSYDPSVDVAILAV 92
Query: 195 ESDEFWEGMHFLELGDIPFLQQA-VAVVGYPQGGDNISVTKGVVSRVEPTQYVHG----- 248
+ E P A V V+GYP GG N + T +R+ + G
Sbjct: 93 PHLPPPPLVFAAE----PAKTGADVVVLGYPGGG-NFTATP---ARIREAIRLSGPDIYG 144
Query: 249 ---ATQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLSGAENIGYII 294
I A + G+SGGP I + +V GV F G+++
Sbjct: 145 DPEPVTRDVYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAIDDAETGFVL 194
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 20/170 (11%)
Query: 135 KSQRETTGSGFVIPGKKILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIV 194
+ Q+ G+GFVI +++TNAHVVA S V V P + A V + D+AIL V
Sbjct: 33 RCQKVLEGTGFVISPDRVMTNAHVVAGSNNVTVYAGDKP--FEATVVSYDPSVDVAILAV 90
Query: 195 ESDEFWEGMHFLELGDIPFLQQA-VAVVGYPQGGDNISVTKGVVSRVEPTQYVHG----- 248
+ E P A V V+GYP GG N + T +R+ + G
Sbjct: 91 PHLPPPPLVFAAE----PAKTGADVVVLGYPGGG-NFTATP---ARIREAIRLSGPDIYG 142
Query: 249 ---ATQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLSGAENIGYII 294
I A + G++GGP I + +V GV F G+++
Sbjct: 143 DPEPVTRDVYTIRADVEQGDAGGPLIDLNGQVLGVVFGAAIDDAETGFVL 192
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 35 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 88
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 89 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 144
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GNSGG + MG
Sbjct: 145 NPA---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELMGI 200
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
N ++ + E IG+ IP + + ++ G+ +
Sbjct: 201 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 35 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 88
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 89 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 144
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GNSGG + MG
Sbjct: 145 NPY---NLGQTITQGIISATGAIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELMGI 200
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
N ++ + E IG+ IP + + ++ G+ +
Sbjct: 201 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 25 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 78
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 79 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 134
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GNSGG + MG
Sbjct: 135 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELMGI 190
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
N ++ + E IG+ IP + + ++ G+ +
Sbjct: 191 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 230
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 34/190 (17%)
Query: 143 SGFVIPGKKILTNAHVVADSTFVLV--------RKHGSPTKYRAQVEAVGHECDLAILIV 194
+GFVI I+TN HV D + +G K ++ + G E D++++ +
Sbjct: 26 TGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDE-DISVMNI 84
Query: 195 ESD---------EFWEGMHFLELGDIPFLQQAVAVVGYPQGGDNISV---TKGVVSRVEP 242
E F E + + + V+GYP N + G + R++
Sbjct: 85 EEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKD 144
Query: 243 TQYVHGATQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS--GAENIGYIIPVPVI 299
+ DA I PGNSG P + N+V GV + + G+E G + P I
Sbjct: 145 N----------ILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQI 194
Query: 300 KHFITGVVEH 309
K FI +E
Sbjct: 195 KDFIQKHIEQ 204
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 37 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 90
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 91 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 146
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GNSGG + MG
Sbjct: 147 NPY---NLGQTITQGIISATGAIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELMGI 202
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
N ++ + E IG+ IP + + ++ G+ +
Sbjct: 203 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 242
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 37 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 90
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 91 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 146
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GNSGG + MG
Sbjct: 147 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELMGI 202
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
N ++ + E IG+ IP + + ++ G+ +
Sbjct: 203 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 242
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 22/196 (11%)
Query: 130 LPWQNKSQRETTGSGFVIPGKK--ILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHEC 187
LP Q E GSG +I K +LTN HV+ + + ++ + ++ A++ +
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDG-REFDAKLIGSDDQS 111
Query: 188 DLAILIVESDEFWEGMHF-----LELGDIPFLQQAVAVVGYPQGGDNISVTKGVVSRVEP 242
D+A+L +++ + L +GD AVAV G P G + T G+VS +
Sbjct: 112 DIALLQIQNPSKLTQIAIADSDKLRVGDF-----AVAV-GNPFGLGQ-TATSGIVSALGR 164
Query: 243 TQY-VHGATQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAFQNLS---GAENIGYIIPVP 297
+ + G IQ DA+IN GNSGG + + ++ G+ L+ G+ IG+ IP
Sbjct: 165 SGLNLEGLENF--IQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSN 222
Query: 298 VIKHFITGVVEHGKYV 313
+ + +++ G+ +
Sbjct: 223 MARTLAQQLIDFGEIL 238
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 38/225 (16%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 35 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 88
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 89 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 144
Query: 223 YPQGGDNI--SVTKGVVSR-----VEPTQYVHGATQLMAIQIDAAINPGNSGGPAI---- 271
P N+ ++T+G++S + PT G +A DA+IN GNSGG +
Sbjct: 145 NPY---NLGQTITQGIISATGRIGLNPT----GRQNFLAT--DASINHGNSGGALVNSLG 195
Query: 272 --MG-NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
MG N ++ + E IG+ IP + + ++ G+ +
Sbjct: 196 ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 38/225 (16%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 37 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 90
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 91 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 146
Query: 223 YPQGGDNI--SVTKGVVSR-----VEPTQYVHGATQLMAIQIDAAINPGNSGGPAI---- 271
P N+ ++T+G++S + PT G +A DA+IN GNSGG +
Sbjct: 147 NPY---NLGQTITQGIISATGRIGLNPT----GRQNFLAT--DASINHGNSGGALVNSLG 197
Query: 272 --MG-NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
MG N ++ + E IG+ IP + + ++ G+ +
Sbjct: 198 ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 242
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 35 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 88
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 89 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 144
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GN GG + MG
Sbjct: 145 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNXGGALVNSLGELMGI 200
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
N ++ + E IG+ IP + + ++ G+ +
Sbjct: 201 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 240
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 37 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 90
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 91 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 146
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GN GG + MG
Sbjct: 147 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNXGGALVNSLGELMGI 202
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHGKYV 313
N ++ + E IG+ IP + + ++ G+ +
Sbjct: 203 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 242
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 28/217 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG ++ + I+TN HV+ D+
Sbjct: 9 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQ 62
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 63 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 118
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAI------MG- 273
P N+ ++T+G++S Q +Q DA+IN GNSGG + MG
Sbjct: 119 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELMGI 174
Query: 274 NKVAGVAFQNLSGAENIGYIIPVPVIKHFITGVVEHG 310
N ++ + E IG+ IP + + ++ G
Sbjct: 175 NTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG 211
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 108 AIELALDSVVKIFTVSSSPNYGLPWQNKSQRE--TTGSGFVIPGKK-ILTNAHVVADSTF 164
A+ A +VV ++ N GL + +Q E T GSG + + I+TN HV+ D+
Sbjct: 37 AVRRAAPAVVNVY------NRGLNTNSHNQLEIRTLGSGVIXDQRGYIITNKHVINDADQ 90
Query: 165 VLVRKHGSPTKYRAQVEAVGHECDLAILIVESDEFWEGMHFLELG--DIPFLQQAVAVVG 222
++V + A + DLA+L + + G+ + + +P + V +G
Sbjct: 91 IIVALQDGRV-FEALLVGSDSLTDLAVLKINA---TGGLPTIPINARRVPHIGDVVLAIG 146
Query: 223 YPQGGDNI--SVTKGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAIMG-NKVAGV 279
P N+ ++T+G++S Q +Q DA+IN GNSGG + ++ G+
Sbjct: 147 NPY---NLGQTITQGIISATGRIGLNPTGRQNF-LQTDASINHGNSGGALVNSLGELXGI 202
Query: 280 AFQNLSGA------ENIGYIIPVPVIKHFITGVVEHGKYV 313
+ + E IG+ IP + ++ G+ +
Sbjct: 203 NTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGRVI 242
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 152 ILTNAHVVADSTFVLVR---------KHGSPTKYRAQVEAVGHECDLAILIV-----ESD 197
I+TN H+ + R K G + VE G E DLAI+ V E
Sbjct: 34 IVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKE-DLAIVHVHETSTEGL 92
Query: 198 EFWEGMHFLELGDIPFLQQAVAVVGYPQGGD---NISVTKGVVSRVEPTQYVHGATQLMA 254
F + + + + D ++ ++V+GYP+G + + G ++ + T
Sbjct: 93 NFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISGT----------F 142
Query: 255 IQIDAAINPGNSGGPAIMG-NKVAGVAFQNLSGAE---NIGYIIPVPVIKHFITGVVE 308
++ DA PGNSG P + +++ G+ + E N G + P +K FI +E
Sbjct: 143 MEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFG-VYFTPQLKEFIQNNIE 199
>pdb|2KL1|A Chain A, Solution Structure Of Gtr34c From Geobacillus
Thermodenitrificans. Northeast Structural Genomics
Consortium Target Gtr34c
Length = 94
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 338 SEVTGVLVNKINPLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKP 397
+E GV V + P A L+ D I A DG PI + RE K+
Sbjct: 2 NEAKGVYVMSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQIVSYVRE----------KQA 51
Query: 398 NEKSLVRVLRDGKEHEFSITLR 419
++ V +RD K+HE + L+
Sbjct: 52 GDRVRVTFIRDRKQHEAELVLK 73
>pdb|2W5E|A Chain A, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|B Chain B, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|C Chain C, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|D Chain D, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|E Chain E, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|F Chain F, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
Length = 163
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 139 ETTGSGFVIPGKKILTNAHVVADSTFVLVRKHGSPTKYRAQVEAVGHECDLAILIVESD 197
E G+GF G I+T AHVV ++TFV V G Y A+V + E D+A + D
Sbjct: 20 EGKGTGF-FSGNDIVTAAHVVGNNTFVNVCYEG--LMYEAKVRYMP-EKDIAFITCPGD 74
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 34/163 (20%)
Query: 141 TGSGFVIPGKKILTNAHV-----VADSTFVLVRKHGSPTKYRAQVEAV-------GHECD 188
+ +GFV+ ILTN HV V D + H + K + ++ G E D
Sbjct: 23 SATGFVVGKNTILTNKHVSKNYKVGDR----ITAHPNSDKGNGGIYSIKKIINYPGKE-D 77
Query: 189 LAILIVESDEFWEGMHFLELGD--IPFLQQA-------VAVVGYPQGGDNISVTKGVVSR 239
++++ VE G D PF A + V+GYP N V +
Sbjct: 78 VSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYV---LYES 134
Query: 240 VEPTQYVHGATQLMAIQIDAAINPGNSGGPAI-MGNKVAGVAF 281
P V G++ + + ++ GNSG P + N++ G+ F
Sbjct: 135 TGPVMSVEGSSIVYSAHTES----GNSGSPVLNSNNELVGIHF 173
>pdb|2J42|A Chain A, Low Quality Crystal Structure Of The Transport Component
C2- Ii Of The C2-Toxin From Clostridium Botulinum
Length = 721
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 116 VVKIFTVSSSPNYGLPWQNKSQ-RETTGSGF 145
+ +F++S+S NY WQN S +TTG F
Sbjct: 318 IFPVFSMSASANYSHTWQNTSTVDDTTGESF 348
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 66/170 (38%), Gaps = 52/170 (30%)
Query: 143 SGFVIPGKKILTNAHVVADSTFVLVRKHGSPTKYRA------------------QVEAVG 184
SG V+ +LTN HVV D+T HG P +A Q+
Sbjct: 37 SGVVVGKDTLLTNKHVV-DAT------HGDPHALKAFPSAINQDNYPNGGFTAEQITKYS 89
Query: 185 HECDLAILIVESDEFWEGMHFLELGDIPFL--------QQAVAVVGYPQGGDNISVT--- 233
E DLAI+ +E + H E+ + Q + V GYP GD T
Sbjct: 90 GEGDLAIVKFSPNE--QNKHIGEVVKPATMSNNAETQTNQNITVTGYP--GDKPVATMWE 145
Query: 234 -KGVVSRVEPTQYVHGATQLMAIQIDAAINPGNSGGPAIM-GNKVAGVAF 281
KG ++ Y+ G A+Q D + GNSG P N+V G+ +
Sbjct: 146 SKGKIT------YLKGE----AMQYDLSTTGGNSGSPVFNEKNEVIGIHW 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,914,821
Number of Sequences: 62578
Number of extensions: 590232
Number of successful extensions: 1552
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1496
Number of HSP's gapped (non-prelim): 60
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)