Query 007766
Match_columns 590
No_of_seqs 136 out of 628
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 1.2E-22 4E-27 215.9 17.3 404 11-576 22-439 (451)
2 3o7q_A L-fucose-proton symport 99.9 7.7E-22 2.6E-26 209.1 20.8 381 12-516 21-409 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.7 6.5E-16 2.2E-20 166.7 25.7 417 38-577 36-478 (491)
4 2gfp_A EMRD, multidrug resista 99.7 1.1E-17 3.7E-22 174.3 8.9 329 32-516 16-354 (375)
5 2cfq_A Lactose permease; trans 99.7 4.2E-17 1.4E-21 174.0 9.0 180 353-572 213-401 (417)
6 2xut_A Proton/peptide symporte 99.5 4.8E-13 1.6E-17 145.6 21.6 148 7-162 6-165 (524)
7 4gc0_A D-xylose-proton symport 99.5 7.4E-13 2.5E-17 142.5 20.3 130 33-162 26-179 (491)
8 4aps_A DI-OR tripeptide H+ sym 98.9 3.5E-09 1.2E-13 113.8 12.5 174 360-572 13-198 (491)
9 1pw4_A Glycerol-3-phosphate tr 98.8 7E-09 2.4E-13 109.5 9.7 174 359-571 27-207 (451)
10 2gfp_A EMRD, multidrug resista 98.8 4.9E-09 1.7E-13 108.6 6.7 152 379-569 19-173 (375)
11 2xut_A Proton/peptide symporte 98.7 2.7E-08 9.3E-13 107.9 8.8 171 360-569 12-197 (524)
12 3o7q_A L-fucose-proton symport 98.7 6.2E-08 2.1E-12 102.0 10.9 123 383-512 49-177 (438)
13 2cfq_A Lactose permease; trans 98.1 5.7E-07 1.9E-11 95.4 1.8 149 356-513 3-163 (417)
14 4gc0_A D-xylose-proton symport 98.1 7.1E-06 2.4E-10 87.8 9.9 107 398-511 60-185 (491)
15 2knc_B Integrin beta-3; transm 21.2 1.8E+02 0.0062 23.3 5.7 43 545-587 7-53 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.89 E-value=1.2e-22 Score=215.91 Aligned_cols=404 Identities=13% Similarity=0.137 Sum_probs=263.8
Q ss_pred cccchHHHHHHHHHHHHhcC-cccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHH
Q 007766 11 FVNNRWLVFVCSMWIQSCAG-IGYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVL 88 (590)
Q Consensus 11 ~~~~RW~~l~as~~i~l~~G-t~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~ 88 (590)
..+.||..+....+..+..+ ..+.++.+-|.+.+++ +|.++.+++.....++.. ..++.|.+.||+|+|.++.+|.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34556777666666665555 3477888889999999 999999998777777775 48899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHH
Q 007766 89 QNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIM 167 (590)
Q Consensus 89 l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~ 167 (590)
+..++..+..+.... .+ ++|.+.+..++.|.+.+..+.+......++|| ++||.+.|+.....+++..+-..+...
T Consensus 101 ~~~~~~~~~~~~~~~-~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWA-TS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHCHHH-HS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHhhhhc-cc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988765441110 11 24456667778888888888999999999998 569999999999998887766554432
Q ss_pred hcCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCC-cchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHH
Q 007766 168 ISANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDN-TSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLA 246 (590)
Q Consensus 168 ~~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~-~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~ 246 (590)
+ + . ..+ .+..+.. .++..
T Consensus 178 l--------~-----------------~----------~~g~w~~~f~~-----~~~~~--------------------- 196 (451)
T 1pw4_A 178 G--------M-----------------A----------WFNDWHAALYM-----PAFCA--------------------- 196 (451)
T ss_dssp H--------H-----------------H----------HTCCSTTCTHH-----HHHHH---------------------
T ss_pred H--------H-----------------H----------HhccHHHHHHH-----HHHHH---------------------
Confidence 2 0 0 000 1111100 00000
Q ss_pred HHHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHH
Q 007766 247 VGLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQA 326 (590)
Q Consensus 247 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (590)
.+..+++.. +.+++++..+.+ + +++ .+++.+++ . ++
T Consensus 197 ~~~~~~~~~---------~~~~~~~~~~~~---~----~~~-------------~~~~~~~~---------~---~~--- 232 (451)
T 1pw4_A 197 ILVALFAFA---------MMRDTPQSCGLP---P----IEE-------------YKNDYPDD---------Y---NE--- 232 (451)
T ss_dssp HHHHHHHHH---------HCCCSSTTTCCC---S----CTT-------------TCCC----------------------
T ss_pred HHHHHHHHh---------hccCCHhhcCCC---C----hhh-------------hccccccc---------c---hh---
Confidence 000000000 001110000000 0 000 00000000 0 00
Q ss_pred HHHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHH
Q 007766 327 KLFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMIS 403 (590)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~s 403 (590)
.+ ++ +....+...++.+|++++|.+.+..++.......+......+.++ .|.+... ...++.+
T Consensus 233 --------~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 298 (451)
T 1pw4_A 233 --------KA---EQ---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 298 (451)
T ss_dssp --------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred --------hh---hc---ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00 00 000112235788999999999888777666555555555555555 5665543 4778889
Q ss_pred hhhhhccccccchhhhh--hhccCCchhHHHHHHHHHHH-HHHHHHHhc---CchhHHHHHHHHHhhhhccchhhHHHHH
Q 007766 404 IWNFLGRVGGGYFSEAI--VRKFAYPRPVAMAVAQVVMA-FALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAAS 477 (590)
Q Consensus 404 i~N~~GRl~~G~lSD~l--~r~~~~~R~~~l~~~~~l~~-~~~l~~~~~---~~~~l~~~~~liG~~yG~~~~l~P~i~a 477 (590)
+.+.+|++++|+++||+ +|++ .. .+...+.. ++++++... ....+.+...+.|+++++.+....+++.
T Consensus 299 ~~~~~~~~~~g~l~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 372 (451)
T 1pw4_A 299 YAGIPGTLLCGWMSDKVFRGNRG-----AT-GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHAL 372 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHH-----HH-HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCch-----hH-HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 99999999999999999 7643 22 23333322 444444332 2335677788899999999999999999
Q ss_pred HhhcccchhhhhhHHHhhhhh-HHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHH
Q 007766 478 ELFGLKSFGALYNFLTLASPA-GSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIM 556 (590)
Q Consensus 478 d~FG~k~~g~nyG~~~~a~~~-g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~ 556 (590)
|.+..++.|+.+|+......+ |..+ +|.+.|.++|..+ |+..|.+.
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~-~~~~~g~l~~~~g--------------------------------~~~~~~~~ 419 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVA-ASAIVGYTVDFFG--------------------------------WDGGFMVM 419 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSC--------------------------------SHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC--------------------------------cHHHHHHH
Confidence 999999999999999998888 8876 7889999998654 89999999
Q ss_pred HHHHHHHHHHHHHhhhhhhH
Q 007766 557 AGLCIIAMVMSLIVVHRTKS 576 (590)
Q Consensus 557 ~~~~~~a~vls~~l~~r~r~ 576 (590)
+++++++.++.+++.++.++
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1pw4_A 420 IGGSILAVILLIVVMIGEKR 439 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999988888776554444
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.88 E-value=7.7e-22 Score=209.10 Aligned_cols=381 Identities=13% Similarity=0.122 Sum_probs=243.5
Q ss_pred ccchHHHHHHHHHHHHhcCcc-cccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHH
Q 007766 12 VNNRWLVFVCSMWIQSCAGIG-YLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQ 89 (590)
Q Consensus 12 ~~~RW~~l~as~~i~l~~Gt~-Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l 89 (590)
.+++|..++......+..|.. +.++.+-|.+++++|+|.+|+.++.....++.. ..++.|.+.||+|+|.++.+|.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 344555555555555555543 688888999999999999999998777777765 588999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHh
Q 007766 90 NFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMI 168 (590)
Q Consensus 90 ~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~ 168 (590)
..++..+.+.. ... .++|.+++..++.|.|.+..++++.....+++| ++||.+.|+.-...+++..+-..+...+
T Consensus 101 ~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776543 222 347777778888899999999999999999998 5789999999999999987776554433
Q ss_pred -cCChhhHHHHHHHhhHHHHHhhheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHH
Q 007766 169 -SANETSLIFLVAVGPSIVVMAFMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAV 247 (590)
Q Consensus 169 -~~~~~~fllfla~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 247 (590)
....... .-+.....+++....+...... ..-..|.+.. ....
T Consensus 177 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~---------------~~~~ 220 (438)
T 3o7q_A 177 ILSNVPHQ--------------------SQDVLDKMSPEQLSAYKHSLVL-SVQTPYMIIV---------------AIVL 220 (438)
T ss_dssp HHTSSCCC--------------------CHHHHHHSCHHHHHHHHHHHHH-HHHHHHHHHH---------------HHHH
T ss_pred Hhcccccc--------------------cccccccCCcchhhhhhhhhhh-hHHHHHHHHH---------------HHHH
Confidence 0100000 0000000000000000000000 0000110000 0000
Q ss_pred HHHHHHHhccccceecccccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHH
Q 007766 248 GLIIIILLPVTIPVVLVFFTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAK 327 (590)
Q Consensus 248 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (590)
+..+ ++. +.+.| | ++ + ++ .++++.
T Consensus 221 ~~~~-~~~---------~~~~p-~---~~---~---~~---------------~~~~~~--------------------- 244 (438)
T 3o7q_A 221 LVAL-LIM---------LTKFP-A---LQ---S---DN---------------HSDAKQ--------------------- 244 (438)
T ss_dssp HHHH-HHH---------HCCCC-C---CT---T---TC---------------CCCSST---------------------
T ss_pred HHHH-HHH---------HHcCC-c---cc---c---cc---------------cccccc---------------------
Confidence 0000 000 01111 0 00 0 00 000000
Q ss_pred HHHHhhhhhhhhcccCCCCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHH-HHHh-cCCccc--chhHHHH
Q 007766 328 LFQAAAEGAVRVKRRKGPRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSL-GYADTS--IYVSMIS 403 (590)
Q Consensus 328 ~~~~~~~~~~~~~~~~~p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I-~~s~-g~~~~~--~~Vsl~s 403 (590)
+ ....++++.+|++++|.+.+..++..+....+.+.+..+ .++. |.+... ...++..
T Consensus 245 -----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 305 (438)
T 3o7q_A 245 -----------------G--SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM 305 (438)
T ss_dssp -----------------T--SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred -----------------c--chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence 0 001234678999999999999888877777777777777 6665 766543 4777889
Q ss_pred hhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhhhccchhhHHHHHHhhccc
Q 007766 404 IWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLK 483 (590)
Q Consensus 404 i~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k 483 (590)
+.+.+||+++|+++||++|++. +....++.+++.+++.........+...++|+++|..+....+++.|.++.+
T Consensus 306 ~~~~~~~~~~g~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (438)
T 3o7q_A 306 VCFFIGRFTGTWLISRFAPHKV------LAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG
T ss_pred HHHHHHHHHHHHHHHHhcchHH------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999988652 2444455555554444444334455668899999999999999999999865
Q ss_pred chhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhh
Q 007766 484 SFGALYNFLTLASPAGSLIFSGVIASGIYDYYA 516 (590)
Q Consensus 484 ~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~ 516 (590)
-++.-++...+ .+|+.+ +|.+.|.++|..+
T Consensus 380 -~~~~~~~~~~~-~~g~~~-~~~~~g~l~~~~g 409 (438)
T 3o7q_A 380 -TKYGSSFIVMT-IIGGGI-VTPVMGFVSDAAG 409 (438)
T ss_dssp -HHHHHHHHHHT-THHHHH-HHHHHHHHHHHHT
T ss_pred -ccchhhHHHHH-HHHHHH-HHHHHHHHHHHhc
Confidence 66666766644 477765 6889999999766
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.72 E-value=6.5e-16 Score=166.67 Aligned_cols=417 Identities=12% Similarity=0.017 Sum_probs=229.7
Q ss_pred ccHHHHHH-----hCCChhhHHHHHHHHHHhhh-ccCccceeeec-cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 007766 38 ISPVIKAH-----MGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEI-LPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPL 110 (590)
Q Consensus 38 ys~~Lk~~-----l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~-~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~ 110 (590)
..+-+++. +|+|.++.+++.....++.. ..+++|.+.|| +|+|.++.+|.++..++..+.. ..+ ++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-----~~~--~~ 108 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-----LPF--GA 108 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-----SCC--ST
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-----Hhh--hH
Confidence 34446666 99999999998666677665 57899999999 8999999999999888875532 222 34
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHhCC-CC--CCchhhhhHhhhhhhHHHHHHHHHHh-cCChhhHHHHHHHhhHHH
Q 007766 111 WVLCIAIFVGTNGETYFNTAALVSCVQNFP-KS--RGPVVGILKGFAGLSGAILTQIYIMI-SANETSLIFLVAVGPSIV 186 (590)
Q Consensus 111 ~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~--RG~a~Gi~~a~~GLSa~i~s~i~~~~-~~~~~~fllfla~~~~~v 186 (590)
+.+.+..++.|.|.+...++......++|| ++ ||.+.++.-....+++.+-..+...+ +.......+.+.....++
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 188 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI 188 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556667777888888888888888999997 45 56677777788888877766666655 322223333333333333
Q ss_pred HHhhheeeeeccCCcc-ccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceeccc
Q 007766 187 VMAFMFIVRPIGGHRQ-VRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVF 265 (590)
Q Consensus 187 ~l~~~~~ir~~~~~~~-~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 265 (590)
+++...+.++-...+. ++++......-... . .+..........+..+ ... .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~--~~~~g~~l~~~~~~~~-~~~----~---- 240 (491)
T 4aps_A 189 GLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP-----------------L--LVKVSLAVAGFIAIIV-VMN----L---- 240 (491)
T ss_dssp HHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH-----------------H--HHHCCCCCHHHHHHHH-HHH----H----
T ss_pred HHHHHHHhCcccccccccCCCCccccchhHH-----------------H--HHHHHHHHHHHHHHHH-HHH----h----
Confidence 3333333332211111 11111110000000 0 0000000000000000 000 0
Q ss_pred ccCCCCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHh-hhhhhhhcccCC
Q 007766 266 FTEPPPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAA-AEGAVRVKRRKG 344 (590)
Q Consensus 266 ~~~~~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 344 (590)
.+.. + .+++ .... .... ...+. ..... .++
T Consensus 241 ~~~~-~-~~~~----------------~~~~-----------------------~~~~----~~~~~~~~~~~-~~~--- 271 (491)
T 4aps_A 241 VGWN-S-LPAY----------------INLL-----------------------TIVA----IAIPVFYFAWM-ISS--- 271 (491)
T ss_dssp HSSC-C-TTHH----------------HHHH-----------------------HHHH----HHHHHHHHHHH-C-----
T ss_pred ccCc-c-cccc----------------hhhh-----------------------hHHH----HHHHHHHHHHH-hhc---
Confidence 0000 0 0000 0000 0000 00000 00000 000
Q ss_pred CCCCCCCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCC--cccchhHHHHhhhhhccccccchhhhhh
Q 007766 345 PRRGEDFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYA--DTSIYVSMISIWNFLGRVGGGYFSEAIV 421 (590)
Q Consensus 345 p~~~~d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~--~~~~~Vsl~si~N~~GRl~~G~lSD~l~ 421 (590)
+ ..+..+..+...++.+++...+....-....+.+....++ .+.+ ......++.++...++..+.|+++||++
T Consensus 272 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 347 (491)
T 4aps_A 272 V----KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWK 347 (491)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred c----cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 0 0000111222334444444333333222333344444444 3333 2335677888899999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHh----------cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhH
Q 007766 422 RKFAYPRPVAMAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF 491 (590)
Q Consensus 422 r~~~~~R~~~l~~~~~l~~~~~l~~~~----------~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~ 491 (590)
||+.. +...+.....+..++++++.. .....+.+...+.|++.|.......+++.|.+..++-|+..|+
T Consensus 348 ~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 426 (491)
T 4aps_A 348 KNQPS-SPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM 426 (491)
T ss_dssp TC----CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred ccCCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 87643 233344555555555433322 1234577788899999999999999999999999999999999
Q ss_pred HHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 492 LTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 492 ~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
..+...+|..+ ++.+.+.+.|. + |...|.+.+++++++.++.+++.
T Consensus 427 ~~~~~~~g~~i-~~~~~~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 427 WFLSSSVGSAL-NAQLVTLYNAK-S--------------------------------EVAYFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp HHHHHHHHHHH-HHHHGGGGGGS-S--------------------------------TTHHHHHTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-HHHHHHHHhcc-c--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886 68787776642 1 67789999998888888877766
Q ss_pred hhhhHH
Q 007766 572 HRTKSV 577 (590)
Q Consensus 572 ~r~r~~ 577 (590)
++.|+.
T Consensus 473 ~~~~~~ 478 (491)
T 4aps_A 473 KRIQGL 478 (491)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.71 E-value=1.1e-17 Score=174.28 Aligned_cols=329 Identities=13% Similarity=0.023 Sum_probs=216.6
Q ss_pred ccccccccHHHHHHhCCChhhHHHHHHHHHHhhh-ccCccceeeeccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 007766 32 GYLFGSISPVIKAHMGYNQRQVSLLGVAKDLGDS-IGFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLIVTNRLPSLPL 110 (590)
Q Consensus 32 ~Y~fSvys~~Lk~~l~~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~ 110 (590)
.+.++.+-|.+.+++|+|.++..++.....++.. ..++.|.+.||+|+|.++.++.++..++..+.... .++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 3455566677899999999999998666677664 58999999999999999999999998888765542 246
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHhCC-CCCCchhhhhHhhhhhhHHHHHHHHHHhcCChhhHHHHHHHhhHHHHHh
Q 007766 111 WVLCIAIFVGTNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLSGAILTQIYIMISANETSLIFLVAVGPSIVVMA 189 (590)
Q Consensus 111 ~~l~~~~~l~G~g~~~~~taal~t~~knFP-~~RG~a~Gi~~a~~GLSa~i~s~i~~~~~~~~~~fllfla~~~~~v~l~ 189 (590)
|.+.+..++.|.+.+..+++......+++| ++|+++.|+.....+++..+-..+...+.
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-------------------- 148 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-------------------- 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS--------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------------------
Confidence 667777888888888888888899999996 68999999999998888776665544320
Q ss_pred hheeeeeccCCccccCCCCcchhhhHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHhccccceecccccCC
Q 007766 190 FMFIVRPIGGHRQVRLSDNTSFLFTYTVCLILAAYMLAVLLLEDLEVANQNVLTVLAVGLIIIILLPVTIPVVLVFFTEP 269 (590)
Q Consensus 190 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 269 (590)
+ ..+ +.. .|.+ ..+..+ +...... .+. |
T Consensus 149 -------------~--~~~--~~~---------~~~~------------------~~~~~~-~~~~~~~-----~~~--~ 176 (375)
T 2gfp_A 149 -------------T--MWN--WRA---------CYLF------------------LLVLCA-GVTFSMA-----RWM--P 176 (375)
T ss_dssp -------------C--HHH--HHH---------HHHH------------------HHHHHH-HHHCCCC-----CSS--C
T ss_pred -------------H--hcc--HHH---------HHHH------------------HHHHHH-HHHHHHH-----HHC--c
Confidence 0 000 000 0000 000000 0011000 000 0
Q ss_pred CCCCccccccccccCcCCCccchhhhhhhccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC
Q 007766 270 PPPVEETLLAETNKGEASKSEDYQEEVILSEVEDEKPPEVDSLPASERQKRIAHLQAKLFQAAAEGAVRVKRRKGPRRGE 349 (590)
Q Consensus 270 ~~~~~~pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 349 (590)
|++ ++ ++++ + ..
T Consensus 177 ----~~~--~~---------------------~~~~----------------------------------~-------~~ 188 (375)
T 2gfp_A 177 ----ETR--PV---------------------DAPR----------------------------------T-------RL 188 (375)
T ss_dssp ----CCS--TT---------------------TCCC----------------------------------C-------CT
T ss_pred ----ccC--CC---------------------Cccc----------------------------------c-------cH
Confidence 000 00 0000 0 00
Q ss_pred CCCHHHhhhcHHHHHHHHHHHhhhcccceeecchHHHHHH-hcCCccc--chhHHHHhhhhhccccccchhhhhhhccCC
Q 007766 350 DFTLPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY 426 (590)
Q Consensus 350 d~t~~~~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s-~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~ 426 (590)
..++++.+|++++|.+.+..++.......+......+.++ .|.+... ...++.++...+|++..|+++||.+|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--- 265 (375)
T 2gfp_A 189 LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--- 265 (375)
T ss_dssp TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1234678999999999888776655444444434444443 4544332 366778888999999999999998761
Q ss_pred chhHHHHHHHHHHHHHHH--HHHh---cCchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHH
Q 007766 427 PRPVAMAVAQVVMAFALL--YYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL 501 (590)
Q Consensus 427 ~R~~~l~~~~~l~~~~~l--~~~~---~~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~ 501 (590)
... .... ....+.. .... .....+++...+.|+++|..+....+.+.|.+. ++.|+.+|+......+|+.
T Consensus 266 --~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~ 340 (375)
T 2gfp_A 266 --MWQ-SVIC-CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG 340 (375)
T ss_dssp --HHH-HHHH-HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred --HHH-HHHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence 111 1111 1111211 1111 123346678889999999999999999999997 8999999999999999998
Q ss_pred HhhHhHHHHHHhhhh
Q 007766 502 IFSGVIASGIYDYYA 516 (590)
Q Consensus 502 i~~~~l~g~iyd~~~ 516 (590)
+ ++.+.|.++|..+
T Consensus 341 ~-~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 341 V-LASLSAMLPQTGQ 354 (375)
T ss_dssp C-CSTTCTHHHHHHH
T ss_pred H-HHHHHHHHhcCCc
Confidence 6 6889999987554
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.68 E-value=4.2e-17 Score=173.99 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=122.1
Q ss_pred HHHhhhcHHHHHHHHHHHhhhcccceee-cchHHHHHHh-cCC---cc--cchhHHHHhhhhhccccccchhhhhhhccC
Q 007766 353 LPQALMKADFLLLFFSLVLASGSGLTVI-DNLGQICQSL-GYA---DT--SIYVSMISIWNFLGRVGGGYFSEAIVRKFA 425 (590)
Q Consensus 353 ~~~~l~~~~Fwll~~~~~~~~g~Glm~i-~n~~~I~~s~-g~~---~~--~~~Vsl~si~N~~GRl~~G~lSD~l~r~~~ 425 (590)
+++.+|++++|.+++..++... ..... .......++. +.. .. ....++..+.+.+|++..|+++||++||+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 291 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSC-TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA 291 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence 4578899999987766433221 11111 1122222322 111 11 124556677889999999999999998652
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHH-HhhhhhHHHHh
Q 007766 426 YPRPVAMAVAQVVMAFALLYYAIGW-PGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIF 503 (590)
Q Consensus 426 ~~R~~~l~~~~~l~~~~~l~~~~~~-~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~-~~a~~~g~~i~ 503 (590)
+.....+++++.+++.... ...+.+...+.+++++........+++|.+..++-|+.+|+. ..+..+|+.+
T Consensus 292 ------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~- 364 (417)
T 2cfq_A 292 ------LLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF- 364 (417)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-
T ss_pred ------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-
Confidence 2344444445444443322 334556666678888877777788999999999999999995 7788899876
Q ss_pred hHhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 007766 504 SGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 504 ~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~ 572 (590)
+|.+.|.++|..+ |+..|.+.+++++++.++.+++.+
T Consensus 365 gp~l~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 365 MSVLAGNMYESIG--------------------------------FQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HTHHHHTHHHHSH--------------------------------HHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhhHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7999999998654 888899999999888887765443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.52 E-value=4.8e-13 Score=145.55 Aligned_cols=148 Identities=7% Similarity=-0.045 Sum_probs=100.7
Q ss_pred hhhhcccchHHHHHHHHHHHHhcCcccccccccHHHHHHhC------CChhhHHHHHHHHHHhhh-ccCccceeeecc-c
Q 007766 7 RLKSFVNNRWLVFVCSMWIQSCAGIGYLFGSISPVIKAHMG------YNQRQVSLLGVAKDLGDS-IGFVPGTFVEIL-P 78 (590)
Q Consensus 7 ~~~~~~~~RW~~l~as~~i~l~~Gt~Y~fSvys~~Lk~~l~------~sq~~~~~is~a~~~G~~-~gi~~G~~~D~~-g 78 (590)
..++..++-|..++...+...+.... .+...+.+++.+| +|.++..++.....++.. ..+++|++.||+ |
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g 83 (524)
T 2xut_A 6 DAPKWPRQIPYIIASEACERFSFYGM--RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG 83 (524)
T ss_dssp -------CCTHHHHHHHHHHHHHHHH--HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555576666655555443222 2233444788899 999999998666666665 478999999999 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhh---hHhhh
Q 007766 79 VWSINLIGVLQNFVGYGLVWLIVTNRLPSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGI---LKGFA 154 (590)
Q Consensus 79 pr~~~~iG~~l~~~GY~~~~l~~~g~i~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi---~~a~~ 154 (590)
+|.++.++.++..+++.+..+ . + .++|.+.+..++.|.|.+..+.+......++||+ +||.+.++ .....
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~--~---~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 157 (524)
T 2xut_A 84 KYNTILWLSLIYCVGHAFLAI--F---E-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTI 157 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--T---S-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH--h---c-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 999999999998888766443 2 1 1356666677777888888888888889999985 68877766 55555
Q ss_pred hhhHHHHH
Q 007766 155 GLSGAILT 162 (590)
Q Consensus 155 GLSa~i~s 162 (590)
.+++.+-.
T Consensus 158 ~~g~~~g~ 165 (524)
T 2xut_A 158 NFGSFFAS 165 (524)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66554443
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.49 E-value=7.4e-13 Score=142.48 Aligned_cols=130 Identities=12% Similarity=-0.020 Sum_probs=89.4
Q ss_pred ccccccc---HHHHHHhCC----Ch----hhHHHHHHHHHHhhhc-cCccceeeeccchHHHHHHHHHHHHHHHHHHHHH
Q 007766 33 YLFGSIS---PVIKAHMGY----NQ----RQVSLLGVAKDLGDSI-GFVPGTFVEILPVWSINLIGVLQNFVGYGLVWLI 100 (590)
Q Consensus 33 Y~fSvys---~~Lk~~l~~----sq----~~~~~is~a~~~G~~~-gi~~G~~~D~~gpr~~~~iG~~l~~~GY~~~~l~ 100 (590)
|..++++ +.+++.++. +. ++..++..+..+|..+ ++++|.+.||+|+|.++.++.++..+|-.+....
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 455665533 22 2344455556677765 5899999999999999999999988886442211
Q ss_pred HhcCC-----------CCchHHHHHHHHHHhhcCccccchhhHHHHHHhCCC-CCCchhhhhHhhhhhhHHHHH
Q 007766 101 VTNRL-----------PSLPLWVLCIAIFVGTNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLSGAILT 162 (590)
Q Consensus 101 ~~g~i-----------~s~~~~~l~~~~~l~G~g~~~~~taal~t~~knFP~-~RG~a~Gi~~a~~GLSa~i~s 162 (590)
..+.. -+.+++++.+.=++.|.|.+..+..+......+.|. +||...++...+..++..+-.
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~ 179 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVY 179 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhh
Confidence 11100 023577788888888999998888888888999984 689998888777766654443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.94 E-value=3.5e-09 Score=113.79 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHHHH------hcCCccc--chhHHHHhhhhhccccccchhhh-hhhccCCchhH
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQICQS------LGYADTS--IYVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPV 430 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s------~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~-l~r~~~~~R~~ 430 (590)
+.+|.+++..++....-..+...+....++ +|.+... ..+++..+.+.++.+.+|+++|| +|||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~----- 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA----- 87 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-----
Confidence 467777777665554433444455555543 6766543 47889999999999999999999 898763
Q ss_pred HHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccc--hhhhhhHHHhhhhhHHHHhhHhH
Q 007766 431 AMAVAQVVMAFALLYYAIG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVI 507 (590)
Q Consensus 431 ~l~~~~~l~~~~~l~~~~~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~--~g~nyG~~~~a~~~g~~i~~~~l 507 (590)
+.+..++..++.++.... ....++++-++.|++.|..+...+++++|.|..++ -+..+++...+..+|..+ +|.+
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~ 165 (491)
T 4aps_A 88 -VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLI 165 (491)
T ss_dssp -HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHH
Confidence 355556666666555544 34578889999999999999999999999999988 778888888999999876 7889
Q ss_pred HHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 007766 508 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 572 (590)
Q Consensus 508 ~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~~ 572 (590)
+|.+.|..+ |+..|.+.+..+++++++.++...
T Consensus 166 ~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 166 VGAAQEAAG--------------------------------YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHSC--------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh--------------------------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 998887544 899999998888887777665543
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.82 E-value=7e-09 Score=109.50 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=126.9
Q ss_pred cHHHHHHHHHHHhhhcccceeecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 007766 359 KADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQ 436 (590)
Q Consensus 359 ~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~ 436 (590)
.+.++.+++.+++....-.++..-+..+.+++ .+... ...++..+...++.+.+|+++||++||+ .+.+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHHHH
Confidence 34455555554443332222223344444555 55443 4788999999999999999999999866 235555
Q ss_pred HHHHHHHHHHHh----c-CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHH
Q 007766 437 VVMAFALLYYAI----G-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI 511 (590)
Q Consensus 437 ~l~~~~~l~~~~----~-~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~i 511 (590)
++.+++.++... . ....++++-++.|++.|..+....++++|.|..|+-+...|+...+..+|..+ +|.+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 566666555444 3 34578889999999999999999999999999999999999999999999876 68888888
Q ss_pred HhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHhh
Q 007766 512 YDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 571 (590)
Q Consensus 512 yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~l~ 571 (590)
.+..+ .++..|.+.+.++++..++.++..
T Consensus 179 ~~~~g-------------------------------~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 179 MAWFN-------------------------------DWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHhc-------------------------------cHHHHHHHHHHHHHHHHHHHHhhc
Confidence 76433 177789998888877776665543
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.78 E-value=4.9e-09 Score=108.60 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=118.4
Q ss_pred eecchHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHhc-CchhHH
Q 007766 379 VIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAIG-WPGEIY 455 (590)
Q Consensus 379 ~i~n~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~~-~~~~l~ 455 (590)
+...+..+.+++|.++.. ...++..+.+.++.+.+|+++||++||+.+ .....+..++.++.... ....++
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~l~ 92 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFMLATLVAVTTSSLTVLI 92 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHHHHHHhccHHHHH
Confidence 334455566677777654 478899999999999999999999998865 34444444444443332 345688
Q ss_pred HHHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHHhhhhhhhhhhhhhccCCCCCCcc
Q 007766 456 VTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSF 535 (590)
Q Consensus 456 ~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~ 535 (590)
+...+.|++.|......+++++|.+..|+.++..|+...+..+|..+ +|.+++.+.|..+
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~------------------- 152 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN------------------- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH-------------------
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc-------------------
Confidence 88899999999999999999999999999999999999999999886 7889998887544
Q ss_pred CCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 536 RDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 536 ~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
++..|.+.+.++++..++..+
T Consensus 153 -------------~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 153 -------------WRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp -------------HHHHHHHHHHHHHHHHCCCCC
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHH
Confidence 888899888877666554433
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.68 E-value=2.7e-08 Score=107.93 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhhhcccceeecchHHHH-HHhc------CCccc--chhHHHHhhhhhccccccchhhhh-hhccCCchh
Q 007766 360 ADFLLLFFSLVLASGSGLTVIDNLGQIC-QSLG------YADTS--IYVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRP 429 (590)
Q Consensus 360 ~~Fwll~~~~~~~~g~Glm~i~n~~~I~-~s~g------~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l-~r~~~~~R~ 429 (590)
+.+|++++..++....-.++...+.... +++| .+... ...++..+...++.+.+|+++||+ +||+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~---- 87 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT---- 87 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH----
Confidence 5677777666655444333444444433 4567 66544 478899999999999999999999 98663
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHhhhhccchhhHHHHHHhhcccchh---hhhhHHHhhhhhHHHHhh
Q 007766 430 VAMAVAQVVMAFALLYYAIG--WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFG---ALYNFLTLASPAGSLIFS 504 (590)
Q Consensus 430 ~~l~~~~~l~~~~~l~~~~~--~~~~l~~~~~liG~~yG~~~~l~P~i~ad~FG~k~~g---~nyG~~~~a~~~g~~i~~ 504 (590)
+.+..++..++.++.... ....++++.++.|++.|..+...+++++|.|..++-+ ..+|+...+..+|..+ +
T Consensus 88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 88 --ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred --HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 244555555555554443 3456888889999999999999999999999988875 3466688888998876 6
Q ss_pred HhHHHHHHhhhhhhhhhhhhhccCCCCCCccCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 007766 505 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 569 (590)
Q Consensus 505 ~~l~g~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~F~i~~~~~~~a~vls~~ 569 (590)
|.+.|.+.|..+ ++..|.+.+.+++++.++.++
T Consensus 165 ~~~~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 165 SLSMPLLLKNFG--------------------------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSTHHHHTSC--------------------------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcccc--------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 888888876433 899999998887777666544
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.67 E-value=6.2e-08 Score=101.99 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=100.3
Q ss_pred hHHHHHHhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH---Hhc-CchhHHH
Q 007766 383 LGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYY---AIG-WPGEIYV 456 (590)
Q Consensus 383 ~~~I~~s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~---~~~-~~~~l~~ 456 (590)
+..+.+++|.++.+ ...++..+...++.+.+|.++||+|||+. +.+..++.+++.++. ... ....+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~------l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG------IITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH------HHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 44456677887754 47889999999999999999999999763 355555556665544 332 3457888
Q ss_pred HHHHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHHH
Q 007766 457 TTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 512 (590)
Q Consensus 457 ~~~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~iy 512 (590)
+-++.|++.|..+...+++++|.+..|+-+...|+...+..+|..+ ++.+++.+.
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 177 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8999999999999999999999999999999999999999999986 688888887
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.12 E-value=5.7e-07 Score=95.41 Aligned_cols=149 Identities=12% Similarity=0.074 Sum_probs=89.4
Q ss_pred hhhcHHHHHHHHHHHhhhcccceeecchHHHHH-HhcCCccc--chhHHHHhhhhhccccccchhhhhhhccCCchhHHH
Q 007766 356 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQ-SLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM 432 (590)
Q Consensus 356 ~l~~~~Fwll~~~~~~~~g~Glm~i~n~~~I~~-s~g~~~~~--~~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l 432 (590)
++|+++||.+...+++....-.++..-+....+ ++|.++.+ ..+++..+...++++.+|+++||+|||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------ 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------ 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence 689999999888765544433344444555444 46776654 488899999999999999999999997743
Q ss_pred HHHHHHHHH---HHHHHHhcC--chhHHHHHHHHHhhhhccc----hhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHh
Q 007766 433 AVAQVVMAF---ALLYYAIGW--PGEIYVTTVLVGLSYGAHW----AIVPAAASELFGLKSFGALYNFLTLASPAGSLIF 503 (590)
Q Consensus 433 ~~~~~l~~~---~~l~~~~~~--~~~l~~~~~liG~~yG~~~----~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~ 503 (590)
.+...+..+ ..+...... ...+.....+.|+..|..+ .+.+..+.|. .|+.+..+|....+..+|..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~- 153 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWAL- 153 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHH-
Confidence 111111111 111101000 0112233333344444333 3344444332 356677888888888888765
Q ss_pred hHhHHHHHHh
Q 007766 504 SGVIASGIYD 513 (590)
Q Consensus 504 ~~~l~g~iyd 513 (590)
+|.+.|.+.|
T Consensus 154 ~~~l~~~l~~ 163 (417)
T 2cfq_A 154 GASIVGIMFT 163 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6888888876
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.10 E-value=7.1e-06 Score=87.76 Aligned_cols=107 Identities=23% Similarity=0.250 Sum_probs=83.8
Q ss_pred hhHHHHhhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHHh-------------------cCchhHHHHH
Q 007766 398 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYAI-------------------GWPGEIYVTT 458 (590)
Q Consensus 398 ~Vsl~si~N~~GRl~~G~lSD~l~r~~~~~R~~~l~~~~~l~~~~~l~~~~-------------------~~~~~l~~~~ 458 (590)
.+|.+.+...+|-+++|+++||+|||+.+ .+..+++.++.++.+. .....+.++=
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 56778888899999999999999998743 4555555555444331 1234688899
Q ss_pred HHHHhhhhccchhhHHHHHHhhcccchhhhhhHHHhhhhhHHHHhhHhHHHHH
Q 007766 459 VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGI 511 (590)
Q Consensus 459 ~liG~~yG~~~~l~P~i~ad~FG~k~~g~nyG~~~~a~~~g~~i~~~~l~g~i 511 (590)
.+.|++.|+...+.|.+++|....++-|...++...+..+|..+ +..+....
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~ 185 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhh
Confidence 99999999999999999999999999999999999888888765 45344333
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.17 E-value=1.8e+02 Score=23.26 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHhhhcc
Q 007766 545 GSICYSITCGIMAGLCIIAMVMSLI----VVHRTKSVYAQLYGNLNR 587 (590)
Q Consensus 545 G~~Cy~~~F~i~~~~~~~a~vls~~----l~~r~r~~~~~~~~~~~~ 587 (590)
...=......+.+++.++|+++-++ .....|+-|+++.|.++.
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~ 53 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERAR 53 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333455556666666666554332 122335556666666554
Done!