BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007768
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 140/286 (48%), Gaps = 12/286 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 39 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 96
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 152
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 153 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 212
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 213 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 269
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 573
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 270 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 315
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 179
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 236
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 297 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 329
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 140/286 (48%), Gaps = 12/286 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 37 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 94
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 150
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 267
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 573
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 268 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 177
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 234
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 295 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 327
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L+ T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + H V+ + F V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +G C++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAV 158
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L+ T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + H V+ + F V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +G C++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAV 158
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 78
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 134
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 251
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 161
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 218
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 279 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 78
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 134
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 251
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 161
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 218
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 279 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 20 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 77
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 133
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 193
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 194 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 250
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 251 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 297
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 160
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 217
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 278 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 310
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 15 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 72
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 128
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 245
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 155
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 212
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 273 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 305
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 78
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 134
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 251
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 161
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 218
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 279 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 32 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 89
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 145
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 205
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 206 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 262
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 263 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 309
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 172
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 229
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 230 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 290 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 322
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 16 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 73
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 129
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 189
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 190 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 246
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 247 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 293
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 99 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 156
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 213
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 274 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 306
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 158
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 15 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 72
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 128
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 245
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 155
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 212
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 273 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 305
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 14 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 71
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 127
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 187
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 188 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 244
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 245 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 291
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 97 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 154
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 211
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 272 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 304
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 11 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 68
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 124
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 184
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 185 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 241
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 242 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 288
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 94 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 151
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 208
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 269 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 301
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + S+ D +KIW + GK +T GH + D++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 158
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 140/287 (48%), Gaps = 12/287 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T +GHTK VS+++F P G + ++ D +KIW + GK +T GH + D++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPN-GEWLAASSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 408
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
+ + WD+ T + + H V+ + F V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 529 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 574
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 158
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 408 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDSNRRFVTSSDDKSLRVWEFGIPVVI 464
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 498
+ + + H + S + HP N +A+ +L+N I
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 308
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 148/307 (48%), Gaps = 29/307 (9%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+L+ T +GH+ V + F P G I SA D VK+W+ +G+ ++T GHS +VR +
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGV 104
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 407
+F DG +AS DK +K W+ GQ+++T TG V V +PD +A S
Sbjct: 105 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQT----IASAS 158
Query: 408 DKKIVQ-WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKY 466
D K V+ W+ N ++ Q H +V + F + ++SDDK++++W ++
Sbjct: 159 DDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 217
Query: 467 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 526
H S+ ++ P+ +A+ S D + ++ N+ + + G++ VN
Sbjct: 218 TG--HSSSVRGVAFSPDGQTIASASDDKTVKLW--------NRNGQLL-QTLTGHSSSVN 266
Query: 527 ---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 583
F PDG+ + S + W+ ++ ++ +TL H G + P Q+ +A+ D
Sbjct: 267 GVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDD 324
Query: 584 GLIKYWD 590
+K W+
Sbjct: 325 KTVKLWN 331
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 146/302 (48%), Gaps = 19/302 (6%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+L+ T +GH+ V + F P G I SA D VK+W+ +G+ ++T GHS +V +
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN--RNGQHLQTLTGHSSSVWGV 350
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409
+F DG +AS DK +K W+ GQ+++T TG V + D Q I A SD
Sbjct: 351 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTI--ASASDD 406
Query: 410 KIVQ-WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
K V+ W+ N ++ Q H +V + F ++ ++SDDK++++W ++
Sbjct: 407 KTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTG 465
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
H S+ ++ P+ +A+ S D + +++ + + GH + V FS
Sbjct: 466 --HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGH--SSSVRGVAFS 517
Query: 529 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 588
PDG+ + S + W+ ++ ++ +TL H G + P Q+ +A+ D +K
Sbjct: 518 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASSDKTVKL 575
Query: 589 WD 590
W+
Sbjct: 576 WN 577
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 19/294 (6%)
Query: 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTK 357
H+ V + F P G I SA D VK+W+ +G+ ++T GHS +V ++F DG
Sbjct: 15 HSSSVRGVAFSPD-GQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 358 FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ-WDM 416
+AS DK +K W+ GQ+++T TG V + D Q I A SD K V+ W+
Sbjct: 72 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTI--ASASDDKTVKLWNR 127
Query: 417 NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 476
N ++ Q H +V + F + ++SDDK++++W ++ H S+
Sbjct: 128 N-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVW 184
Query: 477 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 536
++ P+ +A+ S D + +++ + + GH + V FSPDG+ + S
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGH--SSSVRGVAFSPDGQTIAS 238
Query: 537 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
+ W+ ++ ++ +TL H G + P Q+ +A+ D +K W+
Sbjct: 239 ASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQT-IASASDDKTVKLWN 290
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 475
M KE + H +V + F + ++SDDK++++W ++ H S+
Sbjct: 4 MGVKE-RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSV 60
Query: 476 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 535
++ P+ +A+ S D + +++ + + GH + V FSPDG+ +
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGH--SSSVRGVAFSPDGQTIA 114
Query: 536 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
S + W+ ++ ++ +TL H G + P Q+ +A+ D +K W+
Sbjct: 115 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWN 167
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 132/317 (41%), Gaps = 35/317 (11%)
Query: 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG 355
SGH V+ + F P + +++SA D +K+WD +G RT GH+ +V+DISF + G
Sbjct: 105 SGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSG 162
Query: 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQ 413
+ S D IK WD + + IRT G V V + P+ D +++ DK I
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDH---IVSASRDKTIKM 218
Query: 414 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH 473
W++ T + + H V + + S+D+++RVW + E H H
Sbjct: 219 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRH 277
Query: 474 SMPSISLHPNTNW--------------------LAAQSLDNQILIYSTRERFQLNKKKRF 513
+ IS P +++ L + S D I ++ L
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT---L 334
Query: 514 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 573
GH + V F G+F++S + WD+K+ + +TL HE ++H
Sbjct: 335 VGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT- 391
Query: 574 QSKVATCGWDGLIKYWD 590
V T D +K W+
Sbjct: 392 APYVVTGSVDQTVKVWE 408
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 21/229 (9%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
+ T GH VS++ P H I+SA D +K+W+V +G C++T+ GH + VR +
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEV-QTGYCVKTFTGHREWVRMVRP 242
Query: 352 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNI--------- 401
DGT + S D+ ++ W T + + + + P+ +I
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 402 --------LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSL 453
LL+G DK I WD++T H V + F + ++ +DDK+L
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 454 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 502
RVW++ +K ++ H H + S+ H ++ S+D + ++ R
Sbjct: 363 RVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
+H GH V+A+R G ++S D VK+WD + C+ T GH+ V + F
Sbjct: 232 LHVLMGH---VAAVRCVQYDGRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQF 287
Query: 352 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411
DG ++ S D +I+ WD ETG I T TG + D NIL++G +D +
Sbjct: 288 --DGIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMELKD---NILVSGNADSTV 341
Query: 412 VQWDMNTKEITQEY---DQHLGAVNTITFVDSNRRFV-TSSDDKSLRVWEF 458
WD+ T + Q ++H AV + F N+ FV TSSDD ++++W+
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWDL 389
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 12/208 (5%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
+HT GHT V + K ++S D +++WD+ +G+C+ MGH AVR + +
Sbjct: 192 IHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDI-ETGQCLHVLMGHVAAVRCVQY 247
Query: 352 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411
DG + ++ +YD +K WD ET + T G V L D +++G D I
Sbjct: 248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGIH---VVSGSLDTSI 301
Query: 412 VQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 471
WD+ T H + + D+ V+ + D ++++W+ ++ + P+
Sbjct: 302 RVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 472 MHSMPSISLHPNTNWLAAQSLDNQILIY 499
H L N N++ S D + ++
Sbjct: 360 KHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 140/327 (42%), Gaps = 48/327 (14%)
Query: 269 RSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328
R + PK K +DH ++ ++F G+ I+S D +K+W
Sbjct: 105 RGELKSPKVLKGHDDHV----------------ITCLQFC---GNRIVSGSDDNTLKVWS 145
Query: 329 VVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY 388
V +GKC+RT +GH+ V ++ ++ S D+ +K W+ ETG+ I T G
Sbjct: 146 AV-TGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLY-GHTST 201
Query: 389 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSS 448
V ++ + + +++G D + WD+ T + H+ AV + + RR V+ +
Sbjct: 202 VRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA 256
Query: 449 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 508
D ++VW+ P + H+ SL + + + SLD I ++ N
Sbjct: 257 YDFMVKVWD---PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---N 310
Query: 509 KKKRFAGH--IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGV 563
GH + +G + N ++SG+ + WD K+ + +TL+ H+
Sbjct: 311 CIHTLTGHQSLTSGMELKDN------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 564 CIGCEWHPLEQSKVATCGWDGLIKYWD 590
+++ ++ V T DG +K WD
Sbjct: 365 VTCLQFN---KNFVITSSDDGTVKLWD 388
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 116/273 (42%), Gaps = 23/273 (8%)
Query: 287 IPKRLVHTWSGHTKGV--SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSK 344
+ + + T GHT GV S +R ++I+S D +K+W+ +G+C+ T GH+
Sbjct: 147 VTGKCLRTLVGHTGGVWSSQMR-----DNIIISGSTDRTLKVWNA-ETGECIHTLYGHTS 200
Query: 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA 404
VR + + ++ S D ++ WD ETGQ + G + V + D + +++
Sbjct: 201 TVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQYDGRR---VVS 254
Query: 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 464
G D + WD T+ H V ++ F V+ S D S+RVW+ I
Sbjct: 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312
Query: 465 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 524
++ H + + N L + + D+ + I+ + L + H A Q
Sbjct: 313 HTLTG---HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 557
N + FV++ +G WD K+ + R L
Sbjct: 370 FNKN----FVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRD 348
+HT +GH S + ++++S D+ VKIWD+ +G+C++T G H AV
Sbjct: 312 IHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDI-KTGQCLQTLQGPNKHQSAVTC 367
Query: 349 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383
+ F + +T+S D +K WD +TG+ IR T
Sbjct: 368 LQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 113/298 (37%), Gaps = 58/298 (19%)
Query: 308 FPKYGHLILSAGMDTKVKIWDVVNSGK------CMRTYMGHSKAVRDISFCNDG-TKFLT 360
F G + G+D+ I+++ + R GH + D T+ +T
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 361 ASYDKNIKYWDTETGQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 416
S D+ WD TGQ I F + G V+ L+ + N+ ++G D + WD+
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 417 N-TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 475
T + Y H G +N++ F +RF T SDD + R+++ H +
Sbjct: 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-----------HQL 284
Query: 476 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 535
+ P+ N DN++ I ++ V FS GR +
Sbjct: 285 QVYNREPDRN-------DNELPIVTS-----------------------VAFSISGRLLF 314
Query: 536 SGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 589
+G G C+ WD ++ L HEG I C + S + T WD +K W
Sbjct: 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-ISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 11/173 (6%)
Query: 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG 355
SGHT V ++ ++ +S DT V++WD+ + + +RTY GH + + F DG
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 356 TKFLTASYDKNIKYWDTETGQVIRTFST------GKIPYVVKLNPDDDKQNILLAGMSDK 409
+F T S D + +D TG ++ ++ ++P V + + +L AG S+
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNG 320
Query: 410 KIVQWDMNTKEITQEY----DQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458
WD E+ + H G ++ + T S DK+L++W F
Sbjct: 321 DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 19/229 (8%)
Query: 335 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNP 394
C RT GHS V + + + ++AS D + W+ T Q P+V++
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAF 116
Query: 395 DDDKQNILLAGMSDKKIVQWDMNTKE-------ITQEYDQHLGAVNTITFV-DSNRRFVT 446
+ Q++ G+ D ++++++ +++ H G ++ +V D R +T
Sbjct: 117 APNGQSVACGGL-DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 447 SSDDKSLRVWEF--GIPVVIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYST 501
S D++ +W+ G + I P H+ +SL N+ N + S D + ++
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 502 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 550
R + + GH G V F PDG+ +G +G C +D ++
Sbjct: 236 --RITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 528
+ H + S+ P NW+ + S D ++++++ L +K A + + + F+
Sbjct: 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA-----LTSQKTHAIKLHCPWVMECAFA 117
Query: 529 PDGRFVMSGDGEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 581
P+G+ V G + C ++ S V R L H+G C++ P +++++ T
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 582 WDGLIKYWD 590
D WD
Sbjct: 178 GDQTCVLWD 186
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 57/300 (19%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAV 346
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS------------------------ 382
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 383 ----------------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 420
++ V DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 187
Query: 421 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480
I ++ H +NT+T ++ D + +W + +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 245
Query: 481 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 537
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 431
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 492 LDNQILIYSTR-----------------------------------------ERFQLNKK 510
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 511 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 563
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 57/300 (19%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAV 346
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS------------------------ 382
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 383 ----------------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 420
++ V DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 187
Query: 421 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480
I ++ H +NT+T ++ D + +W + +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 245
Query: 481 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 537
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 431
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 492 LDNQILIYSTR-----------------------------------------ERFQLNKK 510
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 511 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 563
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 57/300 (19%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAV 346
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS------------------------ 382
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 383 ----------------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 420
++ V DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 187
Query: 421 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480
I ++ H +NT+T ++ D + +W + +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 245
Query: 481 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 537
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 431
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 492 LDNQILIYSTR-----------------------------------------ERFQLNKK 510
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 511 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 563
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 57/300 (19%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAV 346
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS------------------------ 382
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 383 ----------------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 420
++ V DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 187
Query: 421 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480
I ++ H +NT+T ++ D + +W + +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 245
Query: 481 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 537
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 431
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 492 LDNQILIYSTR-----------------------------------------ERFQLNKK 510
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 511 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 563
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 57/300 (19%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAV 346
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS------------------------ 382
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 383 ----------------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 420
++ V DDD I+ AG +DK + W++N +
Sbjct: 123 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 181
Query: 421 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480
I ++ H +NT+T ++ D + +W + +S + S++
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 239
Query: 481 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 537
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 240 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 298
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 431
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 120
Query: 492 LDNQILIYSTR-----------------------------------------ERFQLNKK 510
D I +++ + + + LN+
Sbjct: 121 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 511 KRFAGHIVAGYACQVN---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 563
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 181 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 30/244 (12%)
Query: 354 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413
D K ++ D IK WD T + R TG V+ L D + +++ G SD +
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQYD---ERVIITGSSDSTVRV 197
Query: 414 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPH 471
WD+NT E+ H AV + F +N VT S D+S+ VW+ P + ++ + H
Sbjct: 198 WDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 472 MHSMPSISLHPNTNWLAAQSLDNQILIY--STRERFQ-LNKKKRFAGHIVAGYACQVNFS 528
++ + + ++ + S D I ++ ST E + LN KR G AC
Sbjct: 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-------GIAC---LQ 303
Query: 529 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV--CIGCEWHPLEQSKVATCGWDGLI 586
R V+SG + WD + R L+ HE + CI + ++ + +DG I
Sbjct: 304 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-----RFDNKRIVSGAYDGKI 358
Query: 587 KYWD 590
K WD
Sbjct: 359 KVWD 362
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
V T +GH +G++ +++ + L++S D +++WD+ G C+R GH + VR I
Sbjct: 288 FVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDI-ECGACLRVLEGHEELVRCIR 343
Query: 351 FCNDGTKFLTASYDKNIKYWD 371
F D + ++ +YD IK WD
Sbjct: 344 F--DNKRIVSGAYDGKIKVWD 362
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS--------GKCMRTYMGHSKAVRD 348
GH + V IRF K I+S D K+K+WD+V + C+RT + HS V
Sbjct: 334 GHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390
Query: 349 ISFCNDGTKFLTASYDKNIKYWD 371
+ F D + +++S+D I WD
Sbjct: 391 LQF--DEFQIVSSSHDDTILIWD 411
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVV-----NSGKCMRTYMGHSKAVRDISFCNDGT 356
V A + P G I G+D K ++ + N ++ H+ + SF N
Sbjct: 109 VMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 357 KFLTASYDKNIKYWDTETGQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415
+ LTAS D WD E+GQ++++F G + L P + N ++G DKK + WD
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE-TGNTFVSGGCDKKAMVWD 226
Query: 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458
M + + Q ++ H VN++ + S F + SDD + R+++
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 20/187 (10%)
Query: 413 QWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 472
Q+ M T+ + H V + + RR V+SS D + VW+ ++ H
Sbjct: 51 QFVMKTRRTLK---GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT------NKEHA 101
Query: 473 HSMP-----SISLHPNTNWLAAQSLDNQILIYST---RERFQLNKKKRFAGHIVAGYACQ 524
+MP + + P+ +A LDN+ +Y + KKK A H Y
Sbjct: 102 VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH--TNYLSA 159
Query: 525 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV-ATCGWD 583
+F+ +++ G+G C WD +S ++ ++ H + + P E + G D
Sbjct: 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219
Query: 584 GLIKYWD 590
WD
Sbjct: 220 KKAMVWD 226
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 107/304 (35%), Gaps = 53/304 (17%)
Query: 334 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET------------------- 374
K RT GH V + +C D + +++S D + WD+ T
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 375 ---GQVIRTFSTGKIPYVVKLNPDDDKQ------------NILLAGM---SDKKIVQ--- 413
G I V L D ++ N L A SD +I+
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 414 ------WDMNTKEITQEYDQHLGAVNTITFV--DSNRRFVTSSDDKSLRVWEFGIPVVIK 465
WD+ + ++ Q + H V + ++ FV+ DK VW+ ++
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 466 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 525
E H + S+ +P+ + A+ S D +Y R ++ + + I+ G A V
Sbjct: 235 AF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES--IIFG-ASSV 290
Query: 526 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 585
+FS GR + +G + WD L HE P + + + WD
Sbjct: 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHT 349
Query: 586 IKYW 589
++ W
Sbjct: 350 LRVW 353
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 120/300 (40%), Gaps = 57/300 (19%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAV 346
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS------------------------ 382
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 383 ----------------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 420
++ V DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKXVKAWNLNQFQ 187
Query: 421 ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 480
I ++ H +NT+T ++ D + +W +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA--QDEVFSLAF 245
Query: 481 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 537
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 19/225 (8%)
Query: 377 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 431
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 432 VNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491
V T +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVXSVDIDKKASXIISGS 126
Query: 492 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP------DGRFVMSGDGEGKCWF 545
D I +++ + + GH + QV P D ++S +
Sbjct: 127 RDKTIKVWTIKGQCL----ATLLGH--NDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 546 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
W+ ++ H P + + +A+ G DG I W+
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLWN 224
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 10/220 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW----DVVNSGKCMRTYMGHSKAV 346
L T GH V+ I P++ +ILSA D + +W D N G R GHS V
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 406
D+ +DG L+ S+D ++ WD TG R F G V+ + D + I ++G
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQI-VSGS 124
Query: 407 SDKKIVQWD-MNTKEITQEYDQHLGAVNTITFV--DSNRRFVTSSDDKSLRVWEFGIPVV 463
DK I W+ + + T + + H V+ + F SN V+ DK ++VW
Sbjct: 125 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCK 183
Query: 464 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503
+K H + ++++ P+ + A+ D Q +++ E
Sbjct: 184 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 444 FVTSSDDKSLRVWE-------FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496
+++S DK++ +W+ +GIP + H H + + + + + + S D +
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIP---QRALRGHSHFVSDVVISSDGQFALSGSWDGTL 87
Query: 497 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKVFR 555
++ +RF GH V FS D R ++SG + W+ CK
Sbjct: 88 RLWDLTTG---TTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 142
Query: 556 TLKCHEGVCIGCEWHPLEQSKV-ATCGWDGLIKYWD 590
+ H + P + + +CGWD L+K W+
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 10/220 (4%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW----DVVNSGKCMRTYMGHSKAV 346
L T GH V+ I P++ +ILSA D + +W D N G R GHS V
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 406
D+ +DG L+ S+D ++ WD TG R F G V+ + D + I ++G
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQI-VSGS 147
Query: 407 SDKKIVQWD-MNTKEITQEYDQHLGAVNTITFV--DSNRRFVTSSDDKSLRVWEFGIPVV 463
DK I W+ + + T + + H V+ + F SN V+ DK ++VW
Sbjct: 148 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCK 206
Query: 464 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 503
+K H + ++++ P+ + A+ D Q +++ E
Sbjct: 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 444 FVTSSDDKSLRVWE-------FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496
+++S DK++ +W+ +GIP + H H + + + + + + S D +
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIP---QRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110
Query: 497 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKVFR 555
++ +RF GH V FS D R ++SG + W+ CK
Sbjct: 111 RLWDLTTG---TTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165
Query: 556 TLKCHEGVCIGCEWHPLEQSKV-ATCGWDGLIKYWD 590
+ H + P + + +CGWD L+K W+
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 109/272 (40%), Gaps = 33/272 (12%)
Query: 302 VSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 361
+ ++ F P G + + D ++IWD+ N K + GH + + + + G K ++
Sbjct: 126 IRSVCFSPD-GKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 362 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 421
S D+ ++ WD TGQ T S V ++P D K + AG D+ + WD T +
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSLDRAVRVWDSETGFL 241
Query: 422 TQEYDQ-------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEF-------------GIP 461
+ D H +V ++ F + V+ S D+S+++W
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Query: 462 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH----I 517
+ YI H + S++ N ++ + S D +L + + N GH I
Sbjct: 302 CEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVI 356
Query: 518 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 549
A + P+ +G G+ K W +K
Sbjct: 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 92/236 (38%), Gaps = 21/236 (8%)
Query: 346 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLA 404
+R + F DG T + D+ I+ WD E +++ + Y + P DK L++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK---LVS 182
Query: 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVI 464
G D+ + WD+ T + + G + S D+++RVW+ ++
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 465 KYISEP------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK------- 511
+ + H S+ S+ + + + SLD + +++ + + K
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302
Query: 512 --RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI 565
+ GH + V + + +++SG + FWD KS L+ H I
Sbjct: 303 EVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRD 348
+++V GH + + ++ +FP G ++S D V+IWD + +G+C T
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWD-LRTGQCSLTLSIEDGVTTV 212
Query: 349 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF------STGKIPYVVKLNPDDDKQNIL 402
DG S D+ ++ WD+ETG ++ TG V + D Q++
Sbjct: 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV- 271
Query: 403 LAGMSDKKIVQWDM------------NTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDD 450
++G D+ + W++ N+ Y H V ++ ++ ++ S D
Sbjct: 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331
Query: 451 KSLRVWE--FGIPVVIKYISEPHMHSMPSI------SLHPNTNWLAAQSLDNQILIY 499
+ + W+ G P+++ + H +S+ S+ SL P N A S D + I+
Sbjct: 332 RGVLFWDKKSGNPLLML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 26/182 (14%)
Query: 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR------TYMGHSKAVRDISFCND 354
GV+ + P G I + +D V++WD R + GH +V + F D
Sbjct: 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 267
Query: 355 GTKFLTASYDKNIKYWDTE------------TGQVIRTFSTGKIPYVVKLNPDDDKQNIL 402
G ++ S D+++K W+ + +G T+ G +V+ + + + I
Sbjct: 268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYI- 325
Query: 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR------FVTSSDDKSLRVW 456
L+G D+ ++ WD + H +V ++ + + F T S D R+W
Sbjct: 326 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Query: 457 EF 458
++
Sbjct: 386 KY 387
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 580
Y V FSPDG+F+ +G + WD ++ K+ L+ HE ++ P V+
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 581 GWDGLIKYWD 590
G D ++ WD
Sbjct: 185 G-DRTVRIWD 193
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 106/285 (37%), Gaps = 57/285 (20%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNS----GKCMRTYMGHSKAV 346
L T HT V+AI +I+SA D + +W + G R GHS V
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 406
D+ +DG L+ S+D ++ WD L AG+
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWD------------------------------LAAGV 463
Query: 407 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE-FG-IPVVI 464
S ++ V H V ++ F NR+ V++S D+++++W G I
Sbjct: 464 STRRFV--------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI 509
Query: 465 KYISEPHMHSMPSISLHPNT--NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522
E H + + PNT + + S D + +++ + AGH GY
Sbjct: 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS---NCKLRSTLAGH--TGYV 564
Query: 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 567
V SPDG SG +G WD K +L+ + + C
Sbjct: 565 STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 114/269 (42%), Gaps = 24/269 (8%)
Query: 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG 355
+GH+ V + G LS D ++++WD+ +G R ++GH+K V ++F D
Sbjct: 427 TGHSHFVEDV-VLSSDGQFALSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-----VVKLNPDDDKQNILLAGMSDKK 410
+ ++AS D+ IK W+T G+ T S G + V+ +P+ + I+ A DK
Sbjct: 485 RQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-DKT 542
Query: 411 IVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 470
+ W+++ ++ H G V+T+ + D + +W+ K S
Sbjct: 543 VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLE 600
Query: 471 HMHSMPSISLHPNTNWLAAQS--------LDNQILIYSTRERFQLNKKKRFAGHIVAG-- 520
+ ++ PN WL A + L+++ ++ + + +K A
Sbjct: 601 ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660
Query: 521 ---YACQVNFSPDGRFVMSGDGEGKCWFW 546
Y +N+S DG + SG +G W
Sbjct: 661 KVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 118/279 (42%), Gaps = 28/279 (10%)
Query: 270 SWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329
SW P D ++ +P R + GH+ VS + G+ +SA D +++W++
Sbjct: 42 SW-GPNPDRHSSECSYGLPDRRLE---GHSAFVSDVAL-SNNGNFAVSASWDHSLRLWNL 96
Query: 330 VNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-- 387
N G+C ++GH+K V ++F D + ++ D ++ W+ + G+ + T S G
Sbjct: 97 QN-GQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDW 154
Query: 388 -YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVT 446
V+ +P D ++++G D + WD+ T + + H V ++T +
Sbjct: 155 VSCVRFSPSLDAP-VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS 213
Query: 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--------LDNQILI 498
S D R+W+ + ++ + I PN W+ A + L+N+ +I
Sbjct: 214 SDKDGVARLWDLTKGEALSEMAAG--APINQICFSPNRYWMCAATEKGIRIFDLENKDII 271
Query: 499 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 537
Q +KK + + +S DG + SG
Sbjct: 272 VELAPEHQGSKK-------IVPECVSIAWSADGSTLYSG 303
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 15/208 (7%)
Query: 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF-STGKIPYVVKLNPD 395
R GHS V D++ N+G ++AS+D +++ W+ + GQ F K V +PD
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 396 DDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDSNRRFVTSSD--DKS 452
+ + +++G D + W++ + + T H V+ + F S V S D
Sbjct: 121 NRQ---IVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 453 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 512
++VW+ ++ + + H + + S+++ P+ + A+ D ++ L K +
Sbjct: 178 VKVWDLATGRLVTDL-KGHTNYVTSVTVSPDGSLCASSDKDGVARLW------DLTKGEA 230
Query: 513 FAGHIVAGYACQVNFSPDGRFVMSGDGE 540
+ Q+ FSP+ R+ M E
Sbjct: 231 LSEMAAGAPINQICFSPN-RYWMCAATE 257
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 443 RFVTSSDDKSLRVW-----------EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 491
+ V++S DK+L W +G+P E H + ++L N N+ + S
Sbjct: 30 KVVSTSRDKTLLSWGPNPDRHSSECSYGLP---DRRLEGHSAFVSDVALSNNGNFAVSAS 86
Query: 492 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS- 550
D+ + +++ + + +F GH V FSPD R ++SG + W+ K
Sbjct: 87 WDHSLRLWNLQNG---QCQYKFLGH--TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE 141
Query: 551 CKVFRTLKCHEGVCIGCEWHP-LEQSKVATCGWDGLIKYWD 590
C + H + P L+ + + GWD L+K WD
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 122/308 (39%), Gaps = 14/308 (4%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I R T GH + A+ + L+LSA D K+ IWD + K + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 100
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 402
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 159
Query: 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462
+G D WD+ T + T + H G V +++ R FV+ + D S ++W+ +
Sbjct: 160 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 218 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 274
Query: 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 275 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 332
Query: 583 DGLIKYWD 590
D +K W+
Sbjct: 333 DSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 122/308 (39%), Gaps = 14/308 (4%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I R T GH + A+ + L+LSA D K+ IWD + K + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 100
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 402
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 159
Query: 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462
+G D WD+ T + T + H G V +++ R FV+ + D S ++W+ +
Sbjct: 160 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 218 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 274
Query: 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 275 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 332
Query: 583 DGLIKYWD 590
D +K W+
Sbjct: 333 DSFLKIWN 340
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/395 (20%), Positives = 152/395 (38%), Gaps = 107/395 (27%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSKAVRD 348
+LVHT+ H++ V+ F K HL+L+ G D +K+WD+ N +C T GH+ +V
Sbjct: 697 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNH 755
Query: 349 ISFCNDGTKFLTASYDKNIKYWDTETG------QVIRTFSTGKIP-----YVVKL---NP 394
F D + S D ++ WD + V R F + + P +VK +
Sbjct: 756 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 815
Query: 395 DDDK---------------------------------------QNILLAGMSDKKIVQWD 415
D DK ++ + +S + W+
Sbjct: 816 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 875
Query: 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF----------------- 458
++++ + HL V+ + F F+T+SDD+++RVWE
Sbjct: 876 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 935
Query: 459 ----------------GIPVV------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496
G+ ++ I Y+ E + L P+ ++A D I
Sbjct: 936 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAI 992
Query: 497 LIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555
I +L + F+ + A + + F+ DG+ ++S + W+W++ +
Sbjct: 993 KI------IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YV 1045
Query: 556 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
L+ H+ ++ L+ S++ + +DG +K W+
Sbjct: 1046 FLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWN 1078
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 308 FPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 367
F + G I S G D ++++ +G+ + H V +F +D + T S DK +
Sbjct: 630 FSQDGQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 427
K WD+ TG+++ T+ + +L G +D + WD+N KE
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 748
Query: 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457
H +VN F + + S D +LR+W+
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380
D +KI ++ N+ + + +GH KAVR I F DG +++S D I+ W+ +TG +
Sbjct: 989 DGAIKIIELPNN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1047
Query: 381 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440
+ + +L D LL+ D + W++ T I +++ H G V +
Sbjct: 1048 QAHQETVKDFRLLQDSR----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1103
Query: 441 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 500
+F ++S DK+ ++W F + + + + H + + + LA + +I I++
Sbjct: 1104 ATKFSSTSADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Query: 501 TRERFQLNK------KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 544
+ L+ ++ A H G+ V FSPD + ++S G K W
Sbjct: 1163 VSDGQLLHSCAPISVEEGTATH--GGWVTDVCFSPDSKTLVSAGGYLKWW 1210
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401
H+ AV F DG + + DK ++ + ETG+ + + + DD +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD--SY 678
Query: 402 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV--TSSDDKSLRVWEFG 459
+ +DKK+ WD T ++ YD+H VN F + + + T S+D L++W+
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 460 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKRF 513
+ H +S+ P+ LA+ S D + ++ R ER +N K+ F
Sbjct: 739 QKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 315 ILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370
+LS D VK+W+V+ +G+ R + H V + +D TKF + S DK K W
Sbjct: 1065 LLSWSFDGTVKVWNVI-TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 580
+AC FS DG+ + S + + ++ + +K HE + C + + S +ATC
Sbjct: 627 HAC---FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATC 682
Query: 581 GWDGLIKYWD 590
D +K WD
Sbjct: 683 SADKKVKIWD 692
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 487
H AV F +R + DK+L+V++ + I + H + + + +++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYI 679
Query: 488 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY--------ACQVNFSPDGRFVMSGDG 539
A S D ++ I+ + G +V Y C + + +G
Sbjct: 680 ATCSADKKVKIWDSA-----------TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
+ WD + T+ H C + P + +A+C DG ++ WD
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 778
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/395 (20%), Positives = 152/395 (38%), Gaps = 107/395 (27%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVVNSGKCMRTYMGHSKAVRD 348
+LVHT+ H++ V+ F K HL+L+ G D +K+WD+ N +C T GH+ +V
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNH 748
Query: 349 ISFCNDGTKFLTASYDKNIKYWDTETG------QVIRTFSTGKIP-----YVVKL---NP 394
F D + S D ++ WD + V R F + + P +VK +
Sbjct: 749 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808
Query: 395 DDDK---------------------------------------QNILLAGMSDKKIVQWD 415
D DK ++ + +S + W+
Sbjct: 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868
Query: 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF----------------- 458
++++ + HL V+ + F F+T+SDD+++RVWE
Sbjct: 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928
Query: 459 ----------------GIPVV------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496
G+ ++ I Y+ E + L P+ ++A D I
Sbjct: 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAI 985
Query: 497 LIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 555
I +L + F+ + A + + F+ DG+ ++S + W+W++ +
Sbjct: 986 KI------IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YV 1038
Query: 556 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
L+ H+ ++ L+ S++ + +DG +K W+
Sbjct: 1039 FLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWN 1071
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 308 FPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 367
F + G I S G D ++++ +G+ + H V +F +D + T S DK +
Sbjct: 623 FSQDGQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 427
K WD+ TG+++ T+ + +L G +D + WD+N KE
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741
Query: 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457
H +VN F + + S D +LR+W+
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 321 DTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 380
D +KI ++ N+ + + +GH KAVR I F DG +++S D I+ W+ +TG +
Sbjct: 982 DGAIKIIELPNN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040
Query: 381 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDS 440
+ + +L D LL+ D + W++ T I +++ H G V +
Sbjct: 1041 QAHQETVKDFRLLQDSR----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096
Query: 441 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 500
+F ++S DK+ ++W F + + + + H + + + LA + +I I++
Sbjct: 1097 ATKFSSTSADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Query: 501 TRERFQLNK------KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 544
+ L+ ++ A H G+ V FSPD + ++S G K W
Sbjct: 1156 VSDGQLLHSCAPISVEEGTATH--GGWVTDVCFSPDSKTLVSAGGYLKWW 1203
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401
H+ AV F DG + + DK ++ + ETG+ + + + DD +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD--SY 671
Query: 402 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV--TSSDDKSLRVWEFG 459
+ +DKK+ WD T ++ YD+H VN F + + + T S+D L++W+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 460 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKRF 513
+ H +S+ P+ LA+ S D + ++ R ER +N K+ F
Sbjct: 732 QKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 315 ILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 370
+LS D VK+W+V+ +G+ R + H V + +D TKF + S DK K W
Sbjct: 1058 LLSWSFDGTVKVWNVI-TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 580
+AC FS DG+ + S + + ++ + +K HE + C + + S +ATC
Sbjct: 620 HAC---FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATC 675
Query: 581 GWDGLIKYWD 590
D +K WD
Sbjct: 676 SADKKVKIWD 685
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 487
H AV F +R + DK+L+V++ + I + H + + + +++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYI 672
Query: 488 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY--------ACQVNFSPDGRFVMSGDG 539
A S D ++ I+ + G +V Y C + + +G
Sbjct: 673 ATCSADKKVKIWDSA-----------TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 540 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
+ WD + T+ H C + P + +A+C DG ++ WD
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 771
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT 356
H ++ ++FFP G ++S+ D ++KIW V G RT +GH V DI+ + G
Sbjct: 134 AHVSEITKLKFFPS-GEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGR 191
Query: 357 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411
L+AS D I+ W+ TG I TF+ K NP D +I L +D+++
Sbjct: 192 NVLSASLDGTIRLWECGTGTTIHTFNR-------KENPHDGVNSIALFVGTDRQL 239
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGT 356
H ++ ++FFP G ++S+ D ++KIW V G RT +GH V DI+ + G
Sbjct: 137 AHVSEITKLKFFPS-GEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGR 194
Query: 357 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 411
L+AS D I+ W+ TG I TF+ K NP D +I L +D+++
Sbjct: 195 NVLSASLDGTIRLWECGTGTTIHTFNR-------KENPHDGVNSIALFVGTDRQL 242
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 122/308 (39%), Gaps = 14/308 (4%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I R T GH + A+ + L++SA D K+ IWD + K + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 100
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 402
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 159
Query: 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462
+G D WD+ T + T + H G V +++ R FV+ + D S ++W+ +
Sbjct: 160 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 218 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 274
Query: 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 275 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 332
Query: 583 DGLIKYWD 590
D +K W+
Sbjct: 333 DSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 122/308 (39%), Gaps = 14/308 (4%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I R T GH + A+ + L++SA D K+ IWD + K + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 100
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 402
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 159
Query: 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462
+G D WD+ T + T + H G V +++ R FV+ + D S ++W+ +
Sbjct: 160 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 218 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 274
Query: 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 275 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 332
Query: 583 DGLIKYWD 590
D +K W+
Sbjct: 333 DSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 122/308 (39%), Gaps = 14/308 (4%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I R T GH + A+ + L++SA D K+ IWD + K + S V
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 111
Query: 347 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 402
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 170
Query: 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV 462
+G D WD+ T + T + H G V +++ R FV+ + D S ++W+ +
Sbjct: 171 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 228
Query: 463 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 229 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 285
Query: 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 582
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 286 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 343
Query: 583 DGLIKYWD 590
D +K W+
Sbjct: 344 DSFLKIWN 351
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 111/258 (43%), Gaps = 12/258 (4%)
Query: 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 396
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 397 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456
++N ++ G D +I ++ NT E +++ H + +I + ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 457 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRE---RFQLNKKKR 512
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 573 EQSKVATCGWDGLIKYWD 590
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 5/191 (2%)
Query: 269 RSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328
++WI D Y V + H + +I P + +LS D VK+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWN 125
Query: 329 VVNSGKCMRTYMGHSKAVRDISFC-NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP 387
N+ +T+ GH V ++F D + F + D+ +K W T +TG+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 388 YV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445
V V P DK ++ A D I WD TK + H+ V+ F + +
Sbjct: 186 GVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 446 TSSDDKSLRVW 456
+ S+D +L++W
Sbjct: 245 SGSEDGTLKIW 255
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 104/265 (39%), Gaps = 33/265 (12%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T+ GH V + F PK S +D VK+W + S G + V +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 351 F--CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM 406
+ D +TAS D IK WD +T + T + + V +P I+++G
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHP---TLPIIISGS 247
Query: 407 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIK 465
D + W+ +T ++ + + L I + R+ ++ S D V G
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG------ 301
Query: 466 YISEPHMHSMPSISLHPNTNWL------AAQSLDNQILIYSTRERFQ---LNKKKRFAGH 516
+ P++SL P + AA S +I E Q L+ + + G
Sbjct: 302 -------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354
Query: 517 IVAGYACQVNFSPDGRFV-MSGDGE 540
+ + + SP+GRFV + GDGE
Sbjct: 355 VDV-FPQSLAHSPNGRFVTVVGDGE 378
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 111/258 (43%), Gaps = 12/258 (4%)
Query: 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 396
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 397 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456
++N ++ G D +I ++ NT E +++ H + +I + ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 457 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYS---TRERFQLNKKKR 512
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 573 EQSKVATCGWDGLIKYWD 590
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 5/191 (2%)
Query: 269 RSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328
++WI D Y V + H + +I P + +LS D VK+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWN 125
Query: 329 VVNSGKCMRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP 387
N+ +T+ GH V ++F D + F + D+ +K W T +TG+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 388 YV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445
V V P DK ++ A D I WD TK + H+ V+ F + +
Sbjct: 186 GVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 446 TSSDDKSLRVW 456
+ S+D +L++W
Sbjct: 245 SGSEDGTLKIW 255
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 9/174 (5%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T+ GH V + F PK S +D VK+W + S G + V +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 351 F--CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM 406
+ D +TAS D IK WD +T + T + + V +P I+++G
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHP---TLPIIISGS 247
Query: 407 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFG 459
D + W+ +T ++ + + L I + R+ ++ S D V G
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 111/258 (43%), Gaps = 12/258 (4%)
Query: 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 396
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 397 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456
++N ++ G D +I ++ NT E +++ H + +I + ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 457 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYS---TRERFQLNKKKR 512
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 573 EQSKVATCGWDGLIKYWD 590
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 5/191 (2%)
Query: 269 RSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328
++WI D Y V + H + +I P + +LS D VK+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWN 125
Query: 329 VVNSGKCMRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP 387
N+ +T+ GH V ++F D + F + D+ +K W T +TG+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 388 YV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445
V V P DK ++ A D I WD TK + H+ V+ F + +
Sbjct: 186 GVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 446 TSSDDKSLRVW 456
+ S+D +L++W
Sbjct: 245 SGSEDGTLKIW 255
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 9/174 (5%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T+ GH V + F PK S +D VK+W + S G + V +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 351 F--CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM 406
+ D +TAS D IK WD +T + T + + V +P I+++G
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHP---TLPIIISGS 247
Query: 407 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFG 459
D + W+ +T ++ + + L I + R+ ++ S D V G
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 132/337 (39%), Gaps = 54/337 (16%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
+HT GH + F P+ HL + A V++W+ + K + GH V + F
Sbjct: 841 IHT--GHHSTIQYCDFSPQ-NHLAVVALSQYCVELWNTDSRSK-VADCRGHLSWVHGVMF 896
Query: 352 CNDGTKFLTASYDKNIKYWDT-------------------ETGQV-------IRTFS--- 382
DG+ FLT+S D+ I+ W+T + +V IR
Sbjct: 897 SPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLIN 956
Query: 383 --TGKIPYVVK-------LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 433
TG+I Y+ + L+P + G + I ++ I Q QH V
Sbjct: 957 GRTGQIDYLTEAQVSCCCLSP---HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVW 1013
Query: 434 TITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 493
I F + ++SSDD ++VW + + I H ++ L N+ L + S D
Sbjct: 1014 HIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLRGHQETVKDFRLLKNSR-LLSWSFD 1070
Query: 494 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 553
+ +++ NK+K F H +C ++ S D K W +D
Sbjct: 1071 GTVKVWNI---ITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL--LLP 1125
Query: 554 FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
L+ H G C+ C ++ + +AT +G I+ W+
Sbjct: 1126 LHELRGHNG-CVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 308 FPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 367
F + G I S G D ++++ +G+ + H V +F D T S DK +
Sbjct: 629 FSEDGQRIASCGADKTLQVFKA-ETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 368 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA-GMSDKKIVQWDMNTKEITQEYD 426
K W++ TG+++ T+ V + + ++LLA G SD + WD+N KE
Sbjct: 688 KIWNSMTGELVHTYDEHS-EQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF 746
Query: 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457
H +VN F ++ + S D +L++W+
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/403 (20%), Positives = 147/403 (36%), Gaps = 125/403 (31%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
LVHT+ H++ V+ F HL+L+ G D +K+WD +N +C T GH+ +V
Sbjct: 697 LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD-LNQKECRNTMFGHTNSVNHC 755
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNIL------- 402
F D + S D +K WD + ++ + + ++ +P +D + I+
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATSANERKSINVKQF-FLNLEDPQEDMEVIVKCCSWSA 814
Query: 403 ----LAGMSDKKIVQWDMNTKEITQEYDQ------------------------------- 427
+ + KI +D++T + E
Sbjct: 815 DGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN 874
Query: 428 ------------HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG-------------IPV 462
HL V+ + F F+TSSDD+++R+WE + V
Sbjct: 875 TDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDV 934
Query: 463 V-----IKYISEPHMHSMPSIS------------------LHPNTNWLAAQSLDNQILIY 499
V + ++ H+ + I+ L P+ ++A + I I
Sbjct: 935 VFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEIL 994
Query: 500 ST------RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG--DGEGKCWFWDWKSC 551
+ RFQ K+ HI F+ D + ++S D E + W W C
Sbjct: 995 ELVNNRIFQSRFQ---HKKTVWHI--------QFTADEKTLISSSDDAEIQVWNWQLDKC 1043
Query: 552 KVFR----TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
R T+K ++ L+ S++ + +DG +K W+
Sbjct: 1044 IFLRGHQETVK---------DFRLLKNSRLLSWSFDGTVKVWN 1077
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 8/177 (4%)
Query: 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401
H+ AV F DG + + DK ++ + ETG+ + + + DD+
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR--F 677
Query: 402 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV--TSSDDKSLRVWEFG 459
+ DKK+ W+ T E+ YD+H VN F +S+ + T S D L++W+
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 460 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY---STRERFQLNKKKRF 513
+ H +S+ P+ LA+ S D + ++ S ER +N K+ F
Sbjct: 738 QKEC-RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 9/224 (4%)
Query: 324 VKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 383
++I ++VN+ + ++ H K V I F D +++S D I+ W+ + + I F
Sbjct: 991 IEILELVNN-RIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLR 1047
Query: 384 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR 443
G V K + LL+ D + W++ T +++ H G V + +
Sbjct: 1048 GHQETVKDFRLL--KNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATK 1105
Query: 444 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY--ST 501
F ++S DK+ ++W F + + + + H + + ++ LA + +I I+ S
Sbjct: 1106 FSSTSADKTAKIWSFDLLLPLHEL-RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Query: 502 RERFQLNKKKRFAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCW 544
E L G G+ + FSPDG+ ++S G K W
Sbjct: 1165 GELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWW 1208
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 21/171 (12%)
Query: 428 HLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 487
H AV F + +R + DK+L+V++ + I + H + + + ++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTDDRFI 678
Query: 488 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY---ACQVN---FSPDGRFVMSGDGEG 541
A S+D ++ I+++ G +V Y + QVN F+ ++ G
Sbjct: 679 ATCSVDKKVKIWNS-----------MTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSS 727
Query: 542 KCWF--WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
C+ WD + T+ H C + P + +A+C DG +K WD
Sbjct: 728 DCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWD 777
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDT-KVKIWDVVNSGKCMRTYM--------GH 342
+H GH V F +L+ G D +++IW+V N G+ + H
Sbjct: 1126 LHELRGHNGCVRCSAF--SVDSTLLATGDDNGEIRIWNVSN-GELLHLCAPLSEEGAATH 1182
Query: 343 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPD 395
V D+ F DG ++A IK+W+ TG+ +TF T G + ++PD
Sbjct: 1183 GGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPD 1234
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 19/232 (8%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRD--- 348
++T GH V ++ F +++S D K+W G + H+ +V D
Sbjct: 97 LYTLIGHQGNVCSLSF---QDGVVISGSWDKTAKVW---KEGSLVYNLQAHNASVWDAKV 150
Query: 349 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 408
+SF + KFLTAS DK IK W + +VI+TFS V L DD I +
Sbjct: 151 VSFSEN--KFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL 206
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYIS 468
K+V D +T ++ + Y+ H V I + N V+ +D+++R+W + + I+
Sbjct: 207 IKLV--DXHTGDVLRTYEGHESFVYCIKLL-PNGDIVSCGEDRTVRIWSKENGSLKQVIT 263
Query: 469 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520
P + S+ S+ N + + S DN + I+S +E+ + + G + +G
Sbjct: 264 LPAI-SIWSVDCXSNGDIIVGSS-DNLVRIFS-QEKSRWASEDEIKGELRSG 312
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 111/258 (43%), Gaps = 12/258 (4%)
Query: 337 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 396
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 397 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456
++N ++ G D +I ++ NT E +++ H + +I + ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 457 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRE---RFQLNKKKR 512
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 513 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 572
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 573 EQSKVATCGWDGLIKYWD 590
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 9/237 (3%)
Query: 269 RSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328
++WI D Y V + H + +I P + +LS D VK+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWN 125
Query: 329 VVNSGKCMRTYMGHSKAVRDISFC-NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP 387
N+ +T+ GH V ++F D + F + D+ +K W T +TG+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 388 YV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFV 445
V V P DK ++ A D I WD TK + H+ V+ F + +
Sbjct: 186 GVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 446 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYS 500
+ S+D +L++W V K ++ S I+ HP N++A+ DN + S
Sbjct: 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSW-CIATHPTGRKNYIAS-GFDNGFTVLS 299
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 104/265 (39%), Gaps = 33/265 (12%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
L T+ GH V + F PK S +D VK+W + S G + V +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 351 F--CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM 406
+ D +TAS D IK WD +T + T + + V +P I+++G
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHP---TLPIIISGS 247
Query: 407 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRR-FVTSSDDKSLRVWEFGIPVVIK 465
D + W+ +T ++ + + L I + R+ ++ S D V G
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG------ 301
Query: 466 YISEPHMHSMPSISLHPNTNWL------AAQSLDNQILIYSTRERFQ---LNKKKRFAGH 516
+ P++SL P + AA S +I E Q L+ + + G
Sbjct: 302 -------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354
Query: 517 IVAGYACQVNFSPDGRFV-MSGDGE 540
+ + + SP+GRFV + GDGE
Sbjct: 355 VDV-FPQSLAHSPNGRFVTVVGDGE 378
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 122/282 (43%), Gaps = 38/282 (13%)
Query: 314 LILSAGMDTKVKIWDVVNS------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 367
+++S D V IW + G + GH+ V D++ + +++S+DK +
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 368 KYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQE 424
+ WD TG + F + Y V +PD+ + IL AG ++++I W++ K + E
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDN--RQILSAG-AEREIKLWNILGECKFSSAE 157
Query: 425 YDQHLGAVNTITFV----DSNR------RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 474
+ H V+ + + +N+ F + D L+VW I+Y + H +
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--IRYTFKAHESN 215
Query: 475 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534
+ +S+ PN ++A D ++LI+ +++ AG + Q+ F+P ++V
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDIL-NLTYPQREFDAGSTIN----QIAFNPKLQWV 270
Query: 535 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 576
G +G K+F + + E P+ +++
Sbjct: 271 AVGTDQG---------VKIFNLMTQSKAPVCTIEAEPITKAE 303
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 444 FVTSSDDKSLRVWE---------FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494
++ S DK++ +W+ FGIP H H + ++L + + S D
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIP---HKALTGHNHFVSDLALSQENCFAISSSWDK 98
Query: 495 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKV 553
+ ++ R KRF GH Y+ V FSPD R ++S E + W+ CK
Sbjct: 99 TLRLWDLRTG---TTYKRFVGHQSEVYS--VAFSPDNRQILSAGAEREIKLWNILGECKF 153
Query: 554 FRTLKCHEGVCIGC-EWHPLEQSK---------VATCGWDGLIKYWD 590
K + + C + P+ +S A+ GWDG +K W+
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
++ +T+ H V+ + P G I + G D K+ IWD++N R + S + I
Sbjct: 204 QIRYTFKAHESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLTYPQREFDAGS-TINQI 261
Query: 350 SFCNDGTKFLTASYDKNIKYWDTET 374
+F N +++ D+ +K ++ T
Sbjct: 262 AF-NPKLQWVAVGTDQGVKIFNLMT 285
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 19/180 (10%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRD 348
V T GHTK V + + P +++LSAG D + +WD V +G + T +G H +
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD-VGTGAAVLT-LGPDVHPDTIYS 181
Query: 349 ISFCNDGTKFLTASYDKNIKYWDTETGQVI----RTFSTGKIPYVVKLNPDDDKQNILLA 404
+ + DG T+ DK ++ + G V+ R + + V ++ + IL
Sbjct: 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS----EGKILTT 237
Query: 405 G---MSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458
G MS++++ WD E QE D G + D+N ++ D S+R +E
Sbjct: 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR------TYMGHSKAVRDIS 350
GHT V I + P ++I S D V +W++ + G + T GH+K V ++
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 351 FCNDGTK-FLTASYDKNIKYWDTETGQVIRTF 381
+ L+A D I WD TG + T
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 19/180 (10%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRD 348
V T GHTK V + + P +++LSAG D + +WD V +G + T +G H +
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD-VGTGAAVLT-LGPDVHPDTIYS 181
Query: 349 ISFCNDGTKFLTASYDKNIKYWDTETGQVI----RTFSTGKIPYVVKLNPDDDKQNILLA 404
+ + DG T+ DK ++ + G V+ R + + V ++ + IL
Sbjct: 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS----EGKILTT 237
Query: 405 G---MSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458
G MS++++ WD E QE D G + D+N ++ D S+R +E
Sbjct: 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMR------TYMGHSKAVRDIS 350
GHT V I + P ++I S D V +W++ + G + T GH+K V ++
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 351 FCNDGTK-FLTASYDKNIKYWDTETGQVIRTF 381
+ L+A D I WD TG + T
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 291 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS 350
V GH ++++R +G++++S D + +WDV KC+ GH+ +
Sbjct: 262 FVGVLRGH---MASVRTVSGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTI 317
Query: 351 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 410
+ ++ + ++AS D I+ WD E G+++ T G V L D L++ +D
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLSD---KFLVSAAADGS 373
Query: 411 IVQWDMNTKEITQEYDQHLGAVNTI-TFVDSNRRFVTSSDDK 451
I WD N + ++++ H ++ I TF S+ V+ S+++
Sbjct: 374 IRGWDAN--DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 270 SWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329
+++ D K + I K+ + SGH GV A+++ +G +++S D V++WD+
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDI 190
Query: 330 VNSGKCMRTYMGHSKAVR--DISFCNDGTKFLTASYDKNIKYWDTETGQVI--------- 378
G C + GH+ VR DI + +T S D + W +
Sbjct: 191 -KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 379 -RTFST-GKIPYVV--------KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 428
F T + PY V + NI+++G D ++ WD+ + H
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458
+ + + +R +++S D ++R+W+
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDL 339
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 293 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY------------- 339
H GH + + A+ + P+Y +++ +A D++VK+WDV + C+ T
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239
Query: 340 --MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 376
H+ V + F +DG LT D ++ W++ G+
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDIS------- 350
H G++ + P G +LS G D + ++D+ NS + ++Y KAV I
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR--QSYYT-CKAVCSIGRDHPDVH 98
Query: 351 ---------FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 401
+ +D F ++S+DK +K WDT T Q F+ + Y ++P K +
Sbjct: 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL 158
Query: 402 LLAGMSDKKIVQWDMNT---KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457
+ G K+ D+ + I Q + Q + AV+ D T+S D +++W+
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--YILATASADSRVKLWD 215
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 303 SAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS 362
+++R +G++++S D + +WDV KC+ GH+ + + ++ + ++AS
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQX-KCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 363 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 422
D I+ WD E G++ T G V L D L++ +D I WD N + +
Sbjct: 330 XDTTIRIWDLENGELXYTLQ-GHTALVGLLRLSD---KFLVSAAADGSIRGWDAN--DYS 383
Query: 423 QEYDQHLGAVNTI-TFVDSNRRFVTSSDDK 451
+++ H ++ I TF S+ V+ S+++
Sbjct: 384 RKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 270 SWIAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 329
+++ D K + I K+ + SGH GV A+++ +G +++S D V++WD+
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDI 190
Query: 330 VNSGKCMRTYMGHSKAVR--DISFCNDGTKFLTASYDKNIKYWDT----------ETGQV 377
G C + GH+ VR DI + +T S D + W E
Sbjct: 191 -KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 378 IRTFST-GKIPYVV--------KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 428
F T + PY V + NI+++G D ++ WD+ + H
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 429 LGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458
+ + + +R +++S D ++R+W+
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDL 339
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC---MRTYMGHSKAVRD 348
V T SGH++ V +R+ P HL S G D V +W ++T+ H AV+
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 349 ISFCNDGTKFLT---ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG 405
+++C + L + D++I+ W+ +G + + +P K+ I G
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG 351
Query: 406 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457
+ ++V W T E H V ++T +++ D++LR+W
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 90/209 (43%), Gaps = 19/209 (9%)
Query: 315 ILSAGMDT-KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373
ILS+G + + DV + + T GHS+ V + + DG + D + W +
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 271
Query: 374 TGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLA---GMSDKKIVQWDMNTKEITQEYD 426
G+ ++TF+ + VK Q+ +LA G SD+ I W++ + D
Sbjct: 272 PGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 329
Query: 427 QHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN 483
H V +I + + ++ L +W++ P + K + H + S+++ P+
Sbjct: 330 AH-SQVCSILWSPHYKELISGHGFAQNQLVIWKY--PTMAKVAELKGHTSRVLSLTMSPD 386
Query: 484 TNWLAAQSLDNQILIYSTRERFQLNKKKR 512
+A+ + D + ++ F+L+ +R
Sbjct: 387 GATVASAAADETLRLWRC---FELDPARR 412
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 300 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL 359
K + +I + P G + S +D + I+D+ +GK + T GH+ +R ++F D +
Sbjct: 165 KFILSIAYSPD-GKYLASGAIDGIINIFDIA-TGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 360 TASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMN 417
TAS D IK +D + + T S G +V V PDD ++ SDK + WD+
Sbjct: 223 TASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTH---FVSSSSDKSVKVWDVG 278
Query: 418 TKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457
T+ + H V + + + + V+ DD+ + +++
Sbjct: 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/278 (19%), Positives = 112/278 (40%), Gaps = 12/278 (4%)
Query: 315 ILSAGMDTKVKIWDVVNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373
+++ +D VK+W + ++ + GH V + + ++S D +I+ WD E
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 374 TGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 432
G+ I++ G + + + +PD L G K+ + + + + D +
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPD---SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167
Query: 433 NTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 492
+I + + + + D + +++ ++ + E H + S++ P++ L S
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASD 226
Query: 493 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 552
D I IY + N +GH A + V F PD +S + WD +
Sbjct: 227 DGYIKIYDVQHA---NLAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281
Query: 553 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
T H+ G +++ SK+ + G D I +D
Sbjct: 282 CVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYD 318
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
+L+HT GH + ++ F P L+++A D +KI+DV ++ T GH+ V ++
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNV 254
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 381
+FC D T F+++S DK++K WD T + TF
Sbjct: 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 90/202 (44%), Gaps = 14/202 (6%)
Query: 393 NPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDK 451
N ++ + ++ + D K+ +W ++ + H V ++ + +SS D
Sbjct: 43 NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102
Query: 452 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY---STRERFQLN 508
+R+W+ IK I + + +++ P++ +LA + ++ I+ S ++ + L+
Sbjct: 103 HIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 509 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 568
+ +F + +SPDG+++ SG +G +D + K+ TL+ H
Sbjct: 162 TRGKFI--------LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 569 WHPLEQSKVATCGWDGLIKYWD 590
+ P Q V T DG IK +D
Sbjct: 214 FSPDSQLLV-TASDDGYIKIYD 234
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 8/177 (4%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV---NSGKCMRTYMGHS 343
+ + V T SGH++ V +R+ P HL S G D V +W ++T+ H
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 344 KAVRDISFCNDGTKFLT---ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 400
AV+ +++C + L + D++I+ W+ +G + + +P K+
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKEL 255
Query: 401 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457
I G + ++V W T E H V ++T +++ D++LR+W
Sbjct: 256 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC---MRTYMGHSKAVRD 348
V T SGH++ V +R+ P HL S G D V +W ++T+ H AV+
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 349 ISFCNDGTKFLT---ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG 405
+++C + L + D++I+ W+ +G + + +P K+ I G
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG 340
Query: 406 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWE 457
+ ++V W T E H V ++T +++ D++LR+W
Sbjct: 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 90/209 (43%), Gaps = 19/209 (9%)
Query: 315 ILSAGMDT-KVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373
ILS+G + + DV + + T GHS+ V + + DG + D + W +
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260
Query: 374 TGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLA---GMSDKKIVQWDMNTKEITQEYD 426
G+ ++TF+ + VK Q+ +LA G SD+ I W++ + D
Sbjct: 261 PGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 318
Query: 427 QHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN 483
H V +I + + ++ L +W++ P + K + H + S+++ P+
Sbjct: 319 AH-SQVCSILWSPHYKELISGHGFAQNQLVIWKY--PTMAKVAELKGHTSRVLSLTMSPD 375
Query: 484 TNWLAAQSLDNQILIYSTRERFQLNKKKR 512
+A+ + D + ++ F+L+ +R
Sbjct: 376 GATVASAAADETLRLWRC---FELDPARR 401
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 24/225 (10%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT------YMGHSKAVRDIS 350
GH K + + P +LSA D + +WD+ + K R + GH+ V D++
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 351 F-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMS 407
+ + F + + D+ + WDT + T V L+ + + IL G +
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 408 DKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI----- 460
DK + WD+ N K ++ H + + + N + SS D+ L VW+
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 362
Query: 461 --------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 497
P + +I H + S +PN W+ ++ I+
Sbjct: 363 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 441 NRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494
N +++SDD ++ +W+ + K I H + ++ H L D+
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 495 Q-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWK 549
Q ++I+ TR N H V + +VN F+P F++ +G + WD +
Sbjct: 258 QKLMIWDTR-----NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
Query: 550 SCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
+ K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 313 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV--NSGKCMRTYMGHSKAVRDISFC 352
++GHT V + + + L S D K+ IWD N+ K T H+ V +SF
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF- 289
Query: 353 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 408
N ++F+ T S DK + WD ++ + +F + K + V+ +P + + IL + +D
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTD 347
Query: 409 KKIVQWDMN 417
+++ WD++
Sbjct: 348 RRLHVWDLS 356
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 293 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
HT HT V+ + F P Y IL+ G D V +WD+ N + ++ H + + +
Sbjct: 275 HTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 333
Query: 352 CNDGTKFLTAS-YDKNIKYWD 371
L +S D+ + WD
Sbjct: 334 SPHNETILASSGTDRRLHVWD 354
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT---------- 338
K +H++ H + +++ P ++ S+G D ++ +WD+ G+ T
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 339 ---YMGHSKAVRDISF-CNDGTKFLTASYDKNIKYW 370
+ GH+ + D S+ N+ + S D ++ W
Sbjct: 375 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 24/225 (10%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT------YMGHSKAVRDIS 350
GH K + + P +LSA D + +WD+ + K R + GH+ V D++
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 351 F-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMS 407
+ + F + + D+ + WDT + T V L+ + + IL G +
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 408 DKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI----- 460
DK + WD+ N K ++ H + + + N + SS D+ L VW+
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358
Query: 461 --------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 497
P + +I H + S +PN W+ ++ I+
Sbjct: 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 441 NRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494
N +++SDD ++ +W+ + K I H + ++ H L D+
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 495 Q-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWK 549
Q ++I+ TR N H V + +VN F+P F++ +G + WD +
Sbjct: 254 QKLMIWDTR-----NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 550 SCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
+ K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV--NSGKCMRTYMGHSKAVRDISFC 352
++GHT V + + + L S D K+ IWD N+ K T H+ V +SF
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF- 285
Query: 353 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 408
N ++F+ T S DK + WD ++ + +F + K + V+ +P + + IL + +D
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTD 343
Query: 409 KKIVQWDMN 417
+++ WD++
Sbjct: 344 RRLHVWDLS 352
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 293 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
HT HT V+ + F P Y IL+ G D V +WD+ N + ++ H + + +
Sbjct: 271 HTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 329
Query: 352 CNDGTKFLTAS-YDKNIKYWD 371
L +S D+ + WD
Sbjct: 330 SPHNETILASSGTDRRLHVWD 350
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT---------- 338
K +H++ H + +++ P ++ S+G D ++ +WD+ G+ T
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 339 ---YMGHSKAVRDISF-CNDGTKFLTASYDKNIKYW 370
+ GH+ + D S+ N+ + S D ++ W
Sbjct: 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 24/225 (10%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT------YMGHSKAVRDIS 350
GH K + + P +LSA D + +WD+ + K R + GH+ V D++
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 351 F-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMS 407
+ + F + + D+ + WDT + T V L+ + + IL G +
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 408 DKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI----- 460
DK + WD+ N K ++ H + + + N + SS D+ L VW+
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 360
Query: 461 --------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 497
P + +I H + S +PN W+ ++ I+
Sbjct: 361 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 441 NRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 494
N +++SDD ++ +W+ + K I H + ++ H L D+
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 495 Q-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWK 549
Q ++I+ TR N H V + +VN F+P F++ +G + WD +
Sbjct: 256 QKLMIWDTR-----NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
Query: 550 SCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
+ K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 311 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV--NSGKCMRTYMGHSKAVRDISFC 352
++GHT V + + + L S D K+ IWD N+ K T H+ V +SF
Sbjct: 229 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF- 287
Query: 353 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 408
N ++F+ T S DK + WD ++ + +F + K + V+ +P + + IL + +D
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTD 345
Query: 409 KKIVQWDMN 417
+++ WD++
Sbjct: 346 RRLHVWDLS 354
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 293 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
HT HT V+ + F P Y IL+ G D V +WD+ N + ++ H + + +
Sbjct: 273 HTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 331
Query: 352 CNDGTKFLTAS-YDKNIKYWD 371
L +S D+ + WD
Sbjct: 332 SPHNETILASSGTDRRLHVWD 352
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRT---------- 338
K +H++ H + +++ P ++ S+G D ++ +WD+ G+ T
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 339 ---YMGHSKAVRDISF-CNDGTKFLTASYDKNIKYW 370
+ GH+ + D S+ N+ + S D ++ W
Sbjct: 373 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV-VNSGKCMRTYMGHSKAVRDISFCNDG 355
GH + V + + P G+ + SA D IW + +C+ T GH V+ +++ G
Sbjct: 59 GHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 356 TKFLTASYDKNIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSDK- 409
T S DK++ W+ + S T + +VV +P Q +L + D
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV-WHP---SQELLASASYDDT 173
Query: 410 -KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIP 461
K+ + + + + H V ++ F S +R + SDD+++R+W +P
Sbjct: 174 VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 294 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW---------DVVNSG-----KCMRTY 339
T GH V ++ F P G + S D V+IW V SG KC+ T
Sbjct: 189 TLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247
Query: 340 MG-HSKAVRDISFCNDGTKFLTASYDKNIK 368
G HS+ + DI++C TA D I+
Sbjct: 248 SGFHSRTIYDIAWCQLTGALATACGDDAIR 277
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 444 FVTSSDDKSLRVW--EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 501
+ D+ +R+W E + +SE H ++ ++ P N+LA+ S D I+
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK- 89
Query: 502 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 547
+ + GH V ++P G + + + W W+
Sbjct: 90 KNQDDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 25/234 (10%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD---VVNSGKCM---RTYMGHSKAVRDIS 350
GH K + + P +LSA D + +WD V GK + + GH+ V D+S
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 351 F-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMS 407
+ + F + + D+ + WDT + + + V L+ + + IL G +
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 408 DKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI----- 460
DK + WD+ N K ++ H + + + N + SS D+ L VW+
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 461 --------PVVIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTRERF 505
P + +I H + S +PN W + + S DN + ++ E
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENI 408
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 443 RFVTSSDDKSLRVWEF------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ- 495
+++SDD ++ +W+ G V K I H + +S H L D+Q
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 496 ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWKSC 551
++I+ TR N K H V + +VN F+P F++ +G + WD ++
Sbjct: 252 LMIWDTRSN---NTSK--PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 552 KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVV--NSGKCMRTYMGHSKAVRDISFC 352
++GHT V + + + L S D K+ IWD N+ K + H+ V +SF
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF- 281
Query: 353 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 408
N ++F+ T S DK + WD ++ + +F + K + V+ +P + + IL + +D
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTD 339
Query: 409 KKIVQWDMN 417
+++ WD++
Sbjct: 340 RRLNVWDLS 348
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 293 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
H+ HT V+ + F P Y IL+ G D V +WD+ N + ++ H + + +
Sbjct: 267 HSVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 325
Query: 352 CNDGTKFLTAS-YDKNIKYWD 371
L +S D+ + WD
Sbjct: 326 SPHNETILASSGTDRRLNVWD 346
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------------KC 335
K +H++ H + +++ P ++ S+G D ++ +WD+ G +
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPEL 366
Query: 336 MRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYW 370
+ + GH+ + D S+ N+ + S D ++ W
Sbjct: 367 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 12/176 (6%)
Query: 337 RTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPD 395
RT+ VRD+ F D +F +T D+ I +D ++G+ ++ + P +
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 396 D--DKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDSNRRFVTSSDD 450
D Q G +D I WD+ T + Q++ Q LG N R ++ S D
Sbjct: 260 SWLDSQKFATVG-ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318
Query: 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 506
+L +E G V+K IS H + +++++P L + S D +I+ +S+ Q
Sbjct: 319 GTLNFYELGHDEVLKTIS-GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 369
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 122/311 (39%), Gaps = 39/311 (12%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
++ T SGH KG++A+ P ++S D ++ W S M + HS + +
Sbjct: 330 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEW----SSSSM--HQDHSNLIVSL 378
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409
D +K A +I + DT I G P V N +D +L D
Sbjct: 379 ----DNSK---AQEYSSISWDDTLKVNGITKHEFGSQPKVASAN--NDGFTAVLTNDDDL 429
Query: 410 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE 469
I+Q T +I + L + + + N V + +++V++ + + + +
Sbjct: 430 LILQ--SFTGDIIKSV--RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS-DLEVSFDLK 484
Query: 470 PHMHSMPS-ISLHPNTNWLAAQSLDNQILIYSTRER--------FQLNKKKRFAGHIVAG 520
+ + PS IS+ P+ ++AA + +IL+Y + R F+ +K +
Sbjct: 485 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544
Query: 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579
A + D V +G + + + K K+ + L H+ W S + +
Sbjct: 545 GANEEEIEED--LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE--TPSTLVS 600
Query: 580 CGWDGLIKYWD 590
G D IK W+
Sbjct: 601 SGADACIKRWN 611
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 288 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKC------MRTYMG 341
P + T+ HTK V ++R+ P G L S G D + +++ V+ K +
Sbjct: 179 PFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 342 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 384
HS +V +++ DGTK +AS DK IK W+ T +V +T G
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 366 NIKYWDT-ETGQVIRTFSTGKIPY----VVKLNPDDDKQNILLAGMSDKK---IVQWDMN 417
N++ WDT +T +++T IP V ++ D + + I G ++ + +D
Sbjct: 82 NVRIWDTTQTTHILKT----TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 137
Query: 418 TKEITQEYDQHLGAVNTITFVDSNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 476
T A+N++ F S R ++ SDD ++ ++E G P K H +
Sbjct: 138 TSN--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE-GPPFKFKSTFGEHTKFVH 194
Query: 477 SISLHPNTNWLAAQSLDNQILIYS----TRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 532
S+ +P+ + A+ D I++Y+ T+ + + H +G + +SPDG
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH--SGSVFGLTWSPDGT 252
Query: 533 FVMSGDGEGKCWFWDWKSCKVFRTL 557
+ S + W+ + KV +T+
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTI 277
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/300 (19%), Positives = 111/300 (37%), Gaps = 47/300 (15%)
Query: 333 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 392
G + GH+KA+ +S DG +A + +I WD TG R F + +
Sbjct: 314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373
Query: 393 NPD----------DDKQNILLAGMS---DKKIVQWDMNTK----EITQEYDQHLGAV--- 432
DD ++ AG S K V ++++ ++ + D + A
Sbjct: 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 433
Query: 433 -----------------NTITFVDSNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHS 474
++ + ++++FV D + V++ V + + H
Sbjct: 434 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 493
Query: 475 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 534
+ S++ N +L A +++ YS F+L + H A AC V++SPD +
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKVAC-VSWSPDNVRL 551
Query: 535 MSGDGEGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
+G + W+ + + V W L ++ + + G D IK+W+
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN-SVIW--LNETTIVSAGQDSNIKFWN 608
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 313 HLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS--YDKNIKYW 370
+ G D+KV ++ + + + H + ++F N+G FL A+ K I Y
Sbjct: 461 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYS 519
Query: 371 DTETGQVIR----TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQ 423
++ TF T K+ V +PD+ + L G D ++ W+MN I
Sbjct: 520 VANNFELAHTNSWTFHTAKVA-CVSWSPDNVR---LATGSLDNSVIVWNMNKPSDHPIII 575
Query: 424 EYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW 456
+ + +VN++ +++ V++ D +++ W
Sbjct: 576 KGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFW 607
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 110/306 (35%), Gaps = 72/306 (23%)
Query: 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG 355
+G + ++++ F P I+S D V I++ K T+ H+K V + + DG
Sbjct: 144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-PPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415
+ F + D I ++ G F DD +N+
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFE------------DDSLKNV-------------- 236
Query: 416 MNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVW-------EFGIPVVIKYIS 468
H G+V +T+ + ++S DK++++W E IPV + I
Sbjct: 237 -----------AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-IE 284
Query: 469 EPHM------HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 522
+ + ++ SIS + N++ N L + R+ NK
Sbjct: 285 DQQLGIIWTKQALVSISANGFINFV------NPELGSIDQVRYGHNKA-----------I 327
Query: 523 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCG 581
++ S DG+ + S D EG WD + R H + G + + + T
Sbjct: 328 TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK--TTSKGDLFTVS 385
Query: 582 WDGLIK 587
WD +K
Sbjct: 386 WDDHLK 391
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 40/226 (17%)
Query: 312 GHLILSAGMDTKVKIWDVVNSGK-------CMRTYMGHSKAVRDISF-CNDGTKFLTASY 363
GHL LSA D V +WD+ N+G + GHS V D+++ + F + +
Sbjct: 193 GHL-LSASDDHTVCLWDI-NAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 364 DKNIKYWDTETGQVIRTFSTGKIPYVVK--------LNPDDDKQNILLAGMSDKKIVQWD 415
D+ + WDT R+ +T K ++V L+ + + IL G +DK + WD
Sbjct: 251 DQKLMIWDT------RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 416 M-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI------------- 460
+ N K ++ H + + + N + SS D+ L VW+
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 461 PVVIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTRERF 505
P + +I H + S +PN W + + S DN + I+ E
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENI 410
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 443 RFVTSSDDKSLRVWEF------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ- 495
+++SDD ++ +W+ G V K I H + ++ H L D+Q
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 496 ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWKSC 551
++I+ TR + H+V + +VN F+P F++ +G + WD ++
Sbjct: 254 LMIWDTR-----SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 552 KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
K+ T + H+ W P ++ +A+ G D + WD
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFC 352
++GH+ V + + + L S D K+ IWD ++ +++ H+ V +SF
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF- 283
Query: 353 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409
N ++F+ T S DK + WD ++ + TF + K + +++ + IL + +D+
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK-DEIFQVHWSPHNETILASSGTDR 342
Query: 410 KIVQWDMN 417
++ WD++
Sbjct: 343 RLNVWDLS 350
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 293 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
H HT V+ + F P Y IL+ G D V +WD+ N + T+ H + + +
Sbjct: 269 HLVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW 327
Query: 352 CNDGTKFLTAS-YDKNIKYWD 371
L +S D+ + WD
Sbjct: 328 SPHNETILASSGTDRRLNVWD 348
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------------KC 335
K +HT+ H + + + P ++ S+G D ++ +WD+ G +
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 336 MRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYW 370
+ + GH+ + D S+ N+ + S D ++ W
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 506 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW----KSCKVF---RTLK 558
+ N R GH GY N + G + + D C WD K K+
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFT 226
Query: 559 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
H V WH L +S + D + WD
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWD 258
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 21/193 (10%)
Query: 314 LILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 373
+ S D + +WD+ N +R + GH+ I NDGTK T D ++ WD
Sbjct: 155 VCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 374 TGQVI-------RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 426
G+ + + FS G P L GM + +N + Q +
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCP----------TGEWLAVGMESSNVEVLHVNKPDKYQLH- 262
Query: 427 QHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 486
H V ++ F + FV++ D L W P S+ S + + +
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR--TPYGASIFQSKESSSVLSCDISVDDKY 320
Query: 487 LAAQSLDNQILIY 499
+ S D + +Y
Sbjct: 321 IVTGSGDKKATVY 333
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 40/226 (17%)
Query: 312 GHLILSAGMDTKVKIWDVVNSG-------KCMRTYMGHSKAVRDISF-CNDGTKFLTASY 363
GHL LSA D V +WD+ N+G + GHS V D+++ + F + +
Sbjct: 193 GHL-LSASDDHTVCLWDI-NAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 364 DKNIKYWDTETGQVIRTFSTGKIPYVVK--------LNPDDDKQNILLAGMSDKKIVQWD 415
D+ + WDT R+ +T K ++V L+ + + IL G +DK + WD
Sbjct: 251 DQKLXIWDT------RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 416 M-NTKEITQEYDQHLGAVNTITFVDSNRRFVTSS-DDKSLRVWEFGI------------- 460
+ N K ++ H + + + N + SS D+ L VW+
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 461 PVVIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTRERF 505
P + +I H + S +PN W + + S DN I+ E
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENI 410
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 443 RFVTSSDDKSLRVWEF------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496
+++SDD ++ +W+ G V K I H + ++ H L D+Q
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 497 L-IYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWKSC 551
L I+ TR + H+V + +VN F+P F++ +G + WD ++
Sbjct: 254 LXIWDTR-----SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 552 KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
K+ T + H+ W P ++ +A+ G D + WD
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM--GHSKAVRDISFC 352
++GH+ V + + + L S D K+ IWD ++ +++ H+ V +SF
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSF- 283
Query: 353 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409
N ++F+ T S DK + WD ++ + TF + K + +++ + IL + +D+
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK-DEIFQVHWSPHNETILASSGTDR 342
Query: 410 KIVQWDMN 417
++ WD++
Sbjct: 343 RLNVWDLS 350
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 293 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
H HT V+ + F P Y IL+ G D V +WD+ N + T+ H + + +
Sbjct: 269 HLVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW 327
Query: 352 CNDGTKFLTAS-YDKNIKYWD 371
L +S D+ + WD
Sbjct: 328 SPHNETILASSGTDRRLNVWD 348
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 289 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSG-------------KC 335
K +HT+ H + + + P ++ S+G D ++ +WD+ G +
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 336 MRTYMGHSKAVRDISF 351
+ + GH+ + D S+
Sbjct: 369 LFIHGGHTAKISDFSW 384
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 506 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW----KSCKVF---RTLK 558
+ N R GH GY N + G + + D C WD K K+
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFT 226
Query: 559 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
H V WH L +S + D + WD
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWD 258
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 288 PKRLVHTWSGHTKGVSAIRFFPKY--GHLILSAGMDTKVKIWDVVNSGKCM-RTYMGHSK 344
P + + S + + F P G+ +++ V+ W+V +SG+ + + H+
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 345 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 379
V D+ + +DG+K TAS DK K WD + Q I+
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ 122
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 389 VVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQEYDQHLGAVNTITFVDSNRRFVT 446
+ +P N L+AG + W++ + + I + H G V + + D + T
Sbjct: 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103
Query: 447 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH----PNTNWLAAQSLDNQILIYSTR 502
+S DK+ ++W+ I+ H P ++H PN + + S D + + TR
Sbjct: 104 ASCDKTAKMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Query: 503 E 503
Sbjct: 160 S 160
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKY 369
G + +A D K+WD+ +S + ++ H V+ I + + + +T S+DK +K+
Sbjct: 98 GSKVFTASCDKTAKMWDL-SSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 370 WDTET 374
WDT +
Sbjct: 156 WDTRS 160
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 474 SMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 530
S+ +S P T N+L A S N + + ++ Q K A + G V +S D
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK---AQQMHTGPVLDVCWSDD 97
Query: 531 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW-HPLEQSKVATCGWDGLIKYW 589
G V + + WD S + + + H+ W S V T WD +K+W
Sbjct: 98 GSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Query: 590 D 590
D
Sbjct: 157 D 157
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 337 RTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPD 395
RT+ VRD+ F D +F +T D+ I +D ++G+ ++ + P +
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 396 D--DKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDSNRRFVTSSDD 450
D Q G +D I WD+ T + Q++ Q LG N R ++ S D
Sbjct: 260 SWLDSQKFATVG-ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318
Query: 451 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 496
+L +E G V+K IS H + +++++P L + S D +I
Sbjct: 319 GTLNFYELGHDEVLKTIS-GHNKGITALTVNP----LISGSYDGRI 359
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 119/311 (38%), Gaps = 39/311 (12%)
Query: 290 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDI 349
++ T SGH KG++A+ P ++S D ++ W + HS + +
Sbjct: 330 EVLKTISGHNKGITALTVNP-----LISGSYDGRIXEW------SSSSXHQDHSNLIVSL 378
Query: 350 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 409
D +K A +I + DT I G P V N +D +L D
Sbjct: 379 ----DNSK---AQEYSSISWDDTLKVNGITKHEFGSQPKVASAN--NDGFTAVLTNDDDL 429
Query: 410 KIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE 469
I+Q T +I + L + + + N V + +++V++ V +
Sbjct: 430 LILQ--SFTGDIIKSV--RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT 485
Query: 470 PHMHSMPS-ISLHPNTNWLAAQSLDNQILIYSTRER--------FQLNKKKRFAGHIVAG 520
P + + PS IS+ P+ ++AA + +IL+Y + R F+ +K +
Sbjct: 486 P-LRAKPSYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544
Query: 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579
A + D V +G + + + K K+ + L H+ W S + +
Sbjct: 545 GANEEEIEED--LVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE--TPSTLVS 600
Query: 580 CGWDGLIKYWD 590
G D IK W+
Sbjct: 601 SGADACIKRWN 611
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 15/160 (9%)
Query: 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371
G I++ D K+ +DV N+ + + + H K++ D+ F D T F+T+S D N D
Sbjct: 187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246
Query: 372 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ-------------WDMNT 418
T QV++ + T + P K+ I+L G + K V +
Sbjct: 247 VSTLQVLKKYETDCPLNTAVITP--LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF 304
Query: 419 KEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEF 458
+E H G +NT+ + + +D +R+ F
Sbjct: 305 EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF 344
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDG 355
+GH + ++ +++ K G L+ S D+ +W +N G+ + T GH+ + I
Sbjct: 29 TGHERPLTQVKY-NKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFT 86
Query: 356 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 415
+T S D +IK WD GQ + T+ K P VK N LA + +
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143
Query: 416 MNTKEITQEYDQH 428
+N EI ++ H
Sbjct: 144 INIYEIERDSATH 156
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 6/183 (3%)
Query: 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-DSNRRFVTSSDDKSLRVWEFGIP 461
++G D + WD++ K + + Y+ H VN + + F++ +D + +W+ P
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 462 VVIKYISEPHMHSMP-SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520
I ++P S++ HP + A + + + + + G
Sbjct: 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274
Query: 521 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 580
A + SP F+ S + D +VFR L H G W PL+ SK T
Sbjct: 275 LAYSYHSSP---FLASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWSPLDHSKFTTV 330
Query: 581 GWD 583
GWD
Sbjct: 331 GWD 333
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 301 GVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMG---HSKAVRDISFCNDGTK 357
GV+ + + + G IL A V++W+++ + H V+ +S +DGT+
Sbjct: 96 GVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ 153
Query: 358 FLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWD 415
++ D ++K WD V+++++ V P K I L+ D +I+ WD
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP--GKDTIFLSCGEDGRILLWD 210
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 296 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW------DVVNSGKCMRTYMGHSKAVRDI 349
+ H K + ++ + P + L+ + D+ V IW D + GH V+ +
Sbjct: 55 TAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 350 SFCNDGTKFLTASYDKNIKYWDT-ETGQVIRTFSTGKIPYVVKLNPDDDKQNI------L 402
++ NDG T S DK++ W+T E+G+ S V++ + D K I L
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECIS------VLQEHSQDVKHVIWHPSEAL 167
Query: 403 LAGMS-DKKIVQW-DMNTK-EITQEYDQHLGAVNTITF--VDSNRRFVTSSDDKSLRVWE 457
LA S D + W D + E + H G V + F + R + SDD ++RVW+
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Query: 458 F 458
+
Sbjct: 228 Y 228
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 470 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER----FQLNKKKRFAGHIVAGYACQV 525
H ++ S++ P+T+ LAA S D+ + I++ E F+++ GH V
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH--ENEVKGV 113
Query: 526 NFSPDGRFVMSGDGEGKCWFWD----WKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 581
+S DG ++ + + W W+ + + L+ H WHP E + +A+
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSS 172
Query: 582 WDGLIKYW 589
+D ++ W
Sbjct: 173 YDDTVRIW 180
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 312 GHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 371
G+ I++ + ++++W+ +G + H + + + DGT ++ + W+
Sbjct: 120 GNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177
Query: 372 TETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIV---------QWDMNTK 419
+G V++ F TG + + D + + + D K V + + K
Sbjct: 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK 237
Query: 420 EITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFG 459
T + H G ++ + F D+N+ +++SDD +LR+W G
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 139 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 196
Query: 347 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 378
RD D G K ++ D ++K W + +++
Sbjct: 197 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 232
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 9/163 (5%)
Query: 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFC-NDGT 356
H VS + G +S D +K+WD+ + +Y H+ V ++ + +
Sbjct: 126 HDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDS 183
Query: 357 KFLTASYDKNIKYWDTET---GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 413
FL+ S D I WDT I + G +P + +P + + + G + +
Sbjct: 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP--QQSEVFVFGDENGTVSL 241
Query: 414 WDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTS-SDDKSLRV 455
D + H V + F + F+ S S+D SL V
Sbjct: 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 8/184 (4%)
Query: 403 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-SNRRFVTSSDDKSLRVWEFGIP 461
++G D I WD+ + + Y H V + + F++ S+D + +W+ P
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 462 VVIKYISEPHMHSMP-SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 520
I +P S++ HP + + +N + + V G
Sbjct: 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG 262
Query: 521 YACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 579
FSP F+ S + D ++FR+ + H W PL S + T
Sbjct: 263 LV----FSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLTT 317
Query: 580 CGWD 583
GWD
Sbjct: 318 VGWD 321
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 98 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 155
Query: 347 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 378
RD D G K ++ D ++K W + +++
Sbjct: 156 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 191
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 159
Query: 347 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 378
RD D G K ++ D ++K W + +++
Sbjct: 160 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 159
Query: 347 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 378
RD D G K ++ D ++K W + +++
Sbjct: 160 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 287 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAV 346
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 160
Query: 347 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 378
RD D G K ++ D ++K W + +++
Sbjct: 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTY-MGHSKAVRDISFCNDG 355
H K V+ + P + +A +D VKIWD+ GK Y + H V F DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 356 TKFLTASYDKNIKY-----WDTETGQV 377
+ LT I+ WD G +
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLGLI 335
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTY-MGHSKAVRDISFCNDG 355
H K V+ + P + +A +D VKIWD+ GK Y + H V F DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 356 TKFLTASYDKNIKY-----WDTETGQV 377
+ LT I+ WD G +
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLGLI 335
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVN-SGKCMRTY-MGHSKAVRDISFCNDG 355
H K V+ + P + +A +D VKIWD+ GK Y + H V F DG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 356 TKFLTASYDKNIKY-----WDTETGQV 377
+ LT I+ WD G +
Sbjct: 310 ARLLTTDQKSEIRVYSASQWDCPLGLI 336
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 295 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCN 353
WS H+K + + FP D + IW +SG + + H V +
Sbjct: 311 WSPHSKEIMSTHGFP-----------DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 359
Query: 354 DGTKFLTASYDKNIKYWDTETG-QVIRTFSTGKIP 387
DG TA+ D+N+K+W G V R K P
Sbjct: 360 DGRILSTAASDENLKFWRVYDGDHVKRPIPITKTP 394
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 85/211 (40%), Gaps = 12/211 (5%)
Query: 292 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISF 351
+ T +GH V + + H++ S + DV + + T GHS V +++
Sbjct: 169 LRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225
Query: 352 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA---GMSD 408
+DG + + D ++ WD + I F+ VK Q+ LLA G D
Sbjct: 226 RSDGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD 283
Query: 409 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSD--DKSLRVWEFGIPVVIKY 466
K+I W+ T D V ++ + ++ +++ D +L +W + + K
Sbjct: 284 KQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342
Query: 467 ISEP-HMHSMPSISLHPNTNWLAAQSLDNQI 496
+ P H + +L P+ L+ + D +
Sbjct: 343 VDIPAHDTRVLYSALSPDGRILSTAASDENL 373
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 311 YGHLILSAGMDTKVKIWDVVNSGKCMRTYM-GHSKAVRDISFCND--GTKFLTASYDKNI 367
YG + + D VKI+DV N G+ + + GH V +++ + G + SYD+ +
Sbjct: 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 368 KYWDTETG 375
W E G
Sbjct: 84 IIWREENG 91
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 291 LVHTWSGHTKGVSAIRFF-PKYGHLILSAGMDTKVKIWD 328
L +W H + AI + P+YG +I SA D VK+W+
Sbjct: 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 291 LVHTWSGHTKGVSAIRFF-PKYGHLILSAGMDTKVKIWD 328
L +W H + AI + P+YG +I SA D VK+W+
Sbjct: 47 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 291 LVHTWSGHTKGVSAIRFF-PKYGHLILSAGMDTKVKIWD 328
L +W H + AI + P+YG +I SA D VK+W+
Sbjct: 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 340 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 381
HS V +SF + G +A +D +++WD +T + I T
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 338 TYMGHSKAVRDISFCNDGTKFLTASYDKN----IKYWDTETGQVIRTFST---------- 383
+ + +S ++R + F G+ L ++D N I ++TE G+ I + S
Sbjct: 238 SMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 296
Query: 384 --GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 428
+V+ L+ +D + + AG D K+ WD+ TKE + H
Sbjct: 297 EFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 340 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 381
HS V +SF + G +A +D +++WD +T + I T
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 338 TYMGHSKAVRDISFCNDGTKFLTASYDKN----IKYWDTETGQVIRTFST---------- 383
+ + +S ++R + F G+ L ++D N I ++TE G+ I + S
Sbjct: 228 SMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286
Query: 384 --GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 428
+V+ L+ +D + + AG D K+ WD+ TKE + H
Sbjct: 287 EFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMH 332
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 99/268 (36%), Gaps = 41/268 (15%)
Query: 290 RLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVR 347
+L+ T +GH V + + PK+G ++ S D KV IW N + + HS +V
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 103
Query: 348 DISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL-A 404
+ + G L AS D GK+ VV+ + I++ A
Sbjct: 104 SVQWAPHEYGPLLLVASSD-------------------GKVS-VVEFKENGTTSPIIIDA 143
Query: 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV-- 462
W T E E +H G +R+FVT D +++W++
Sbjct: 144 HAIGVNSASWAPATIE---EDGEHNG-------TKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 463 -VIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518
V++ E H + ++ P ++LA+ S D +I++ KK
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 519 AGYACQVNFSPDGRFVMSGDGEGKCWFW 546
+ ++S G + G+ K W
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 309 PKYGHLILSAGMDTKVKIWDVVNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNI 367
P H++ + G D + IWDV + H + ++ F + L T S D ++
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Query: 368 KYWDTET 374
+WD T
Sbjct: 306 WHWDAST 312
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 534 VMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
V +G +G WD + + LK HE +HP + TC DG + +WD
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 41/268 (15%)
Query: 290 RLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVR 347
+L+ T +GH V + + PK+G ++ S D KV IW N + + HS +V
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103
Query: 348 DISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL-A 404
+ + G L AS D GK+ VV+ + I++ A
Sbjct: 104 SVQWAPHEYGPMLLVASSD-------------------GKVS-VVEFKENGTTSPIIIDA 143
Query: 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV-- 462
W T E E +H G +R+FVT D +++W++
Sbjct: 144 HAIGVNSASWAPATIE---EDGEHNG-------TKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 463 -VIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518
V++ E H + ++ P +++A+ S D +I++ KK
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 519 AGYACQVNFSPDGRFVMSGDGEGKCWFW 546
+ ++S G + G+ K W
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 99/268 (36%), Gaps = 41/268 (15%)
Query: 290 RLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVR 347
+L+ T +GH V + + PK+G ++ S D KV IW N + + HS +V
Sbjct: 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 105
Query: 348 DISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL-A 404
+ + G L AS D GK+ VV+ + I++ A
Sbjct: 106 SVQWAPHEYGPLLLVASSD-------------------GKVS-VVEFKENGTTSPIIIDA 145
Query: 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV-- 462
W T E E +H G +R+FVT D +++W++
Sbjct: 146 HAIGVNSASWAPATIE---EDGEHNG-------TKESRKFVTGGADNLVKIWKYNSDAQT 195
Query: 463 -VIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518
V++ E H + ++ P ++LA+ S D +I++ KK
Sbjct: 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 255
Query: 519 AGYACQVNFSPDGRFVMSGDGEGKCWFW 546
+ ++S G + G+ K W
Sbjct: 256 PDVLWRASWSLSGNVLALSGGDNKVTLW 283
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY---MGHSKAVRDISF-CN 353
H V+ F P+ L+ ++ +D VK+WD+ N K +Y M H K V F
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI-KDKNSYIAEMPHEKPVNAAYFNPT 260
Query: 354 DGTKFLTASYDKNIKYWDT 372
D TK LT I+ + +
Sbjct: 261 DSTKLLTTDQRNEIRVYSS 279
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 494 NQILIYSTRERFQLNKKKRFAGHIVAGYA---------CQVNFSPDGRFVMSGDGEGKCW 544
NQ+ + S R L + F+G ++ +A C V+ S + + +GD G+
Sbjct: 131 NQLFVSSIRGATTL---RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 187
Query: 545 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
++F+ K H+ E++P +AT D +K WD
Sbjct: 188 LLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 232
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 298 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVVNSGKCMRTY---MGHSKAVRDISF-CN 353
H V+ F P+ L+ ++ +D VK+WD+ N K +Y M H K V F
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI-KDKNSYIAEMPHEKPVNAAYFNPT 261
Query: 354 DGTKFLTASYDKNIKYWDT 372
D TK LT I+ + +
Sbjct: 262 DSTKLLTTDQRNEIRVYSS 280
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 494 NQILIYSTRERFQLNKKKRFAGHIVAGYA---------CQVNFSPDGRFVMSGDGEGKCW 544
NQ+ + S R L + F+G ++ +A C V+ S + + +GD G+
Sbjct: 132 NQLFVSSIRGATTL---RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 188
Query: 545 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 590
++F+ K H+ E++P +AT D +K WD
Sbjct: 189 LLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 98/268 (36%), Gaps = 41/268 (15%)
Query: 290 RLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVVNSG-KCMRTYMGHSKAVR 347
+L+ T +GH V + + PK+G ++ S D KV IW N + + HS +V
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVN 103
Query: 348 DISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL-A 404
+ + G L AS D GK+ VV+ + I++ A
Sbjct: 104 SVQWAPHEYGPXLLVASSD-------------------GKVS-VVEFKENGTTSPIIIDA 143
Query: 405 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV-- 462
W T E E +H G +R+FVT D +++W++
Sbjct: 144 HAIGVNSASWAPATIE---EDGEHNG-------TKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 463 -VIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 518
V++ E H + ++ P ++ A+ S D +I++ KK
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 519 AGYACQVNFSPDGRFVMSGDGEGKCWFW 546
+ ++S G + G+ K W
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 297 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 328
GH KG+ ++ + + HL+LS+G D V +W+
Sbjct: 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 344 KAVRDISFCNDGTK-FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNIL 402
K+ ++ DG K ++T + DK + +T T VI T S G+ P + + PD K +
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK--VY 173
Query: 403 LAGMSDKKIVQWDMNTKEI 421
+A I D T +
Sbjct: 174 VANFDSXSISVIDTVTNSV 192
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 366 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA----GMSDKKIVQWDMNTKEI 421
I Y +T TG + +P + K+ + DK + A G +D K +W ++ +
Sbjct: 151 TITYNETSTGVL------NPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDV--V 202
Query: 422 TQEYDQHLGAVNTITFVDSNRRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHSMPS 477
+ G + + RF+ ++ R W F IP+ +KY+ E P MP
Sbjct: 203 FSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQ 262
Query: 478 I 478
+
Sbjct: 263 V 263
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWL 487
A + + + ++F S + + + F V K+I +P ++ S+ HPN+ L
Sbjct: 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157
Query: 488 AAQSLDNQILIYS 500
AA S D + I+S
Sbjct: 158 AAGSCDFKCRIFS 170
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 431 AVNTITFVDSNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWL 487
A + + + ++F S + + + F V K+I +P ++ S+ HPN+ L
Sbjct: 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157
Query: 488 AAQSLDNQILIYS 500
AA S D + I+S
Sbjct: 158 AAGSCDFKCRIFS 170
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 552 KVFRTLKCHEGVCIGCEW-HPLEQSKVATCGWDGLIKYW 589
K+ TL HEG +W HP + +A+C +DG + W
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,431,146
Number of Sequences: 62578
Number of extensions: 690152
Number of successful extensions: 2480
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1447
Number of HSP's gapped (non-prelim): 409
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)